Query 019586
Match_columns 338
No_of_seqs 262 out of 1962
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vtx_A MAMA; tetratricopeptide 99.7 3E-17 1E-21 139.3 13.3 140 2-141 17-173 (184)
2 2pl2_A Hypothetical conserved 99.7 1.7E-17 5.7E-22 147.3 10.9 161 2-190 17-205 (217)
3 4gyw_A UDP-N-acetylglucosamine 99.7 8.5E-17 2.9E-21 169.8 12.2 140 2-141 21-177 (723)
4 4gco_A Protein STI-1; structur 99.7 4.8E-16 1.7E-20 127.7 10.8 92 2-114 25-117 (126)
5 1w3b_A UDP-N-acetylglucosamine 99.6 1.2E-15 4.1E-20 143.8 12.6 139 3-141 148-303 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.6 2.6E-15 8.8E-20 141.5 14.1 175 2-176 181-383 (388)
7 2h6f_A Protein farnesyltransfe 99.6 4.6E-16 1.6E-20 152.2 9.1 143 2-144 109-275 (382)
8 2pl2_A Hypothetical conserved 99.6 1.4E-15 4.9E-20 134.8 10.6 131 2-133 51-209 (217)
9 4i17_A Hypothetical protein; T 99.6 1.8E-15 6.1E-20 132.8 11.1 113 2-114 19-155 (228)
10 4ga2_A E3 SUMO-protein ligase 99.6 2.3E-16 7.9E-21 132.8 4.2 113 2-114 9-136 (150)
11 2hr2_A Hypothetical protein; a 99.6 2E-15 6.8E-20 132.1 9.9 103 2-118 23-142 (159)
12 3gyz_A Chaperone protein IPGC; 99.6 1.2E-14 3.9E-19 124.5 12.0 101 12-112 24-138 (151)
13 3u4t_A TPR repeat-containing p 99.6 1.5E-14 5E-19 128.6 12.5 141 2-142 15-175 (272)
14 1fch_A Peroxisomal targeting s 99.6 3.2E-14 1.1E-18 131.6 15.1 174 3-176 111-340 (368)
15 4abn_A Tetratricopeptide repea 99.6 1.2E-14 4.1E-19 144.5 11.7 142 2-143 114-292 (474)
16 3vtx_A MAMA; tetratricopeptide 99.5 3.5E-14 1.2E-18 120.3 12.2 112 2-113 51-176 (184)
17 3urz_A Uncharacterized protein 99.5 1.5E-14 5.2E-19 127.3 9.8 141 2-142 16-190 (208)
18 4eqf_A PEX5-related protein; a 99.5 9.7E-14 3.3E-18 129.4 15.2 139 3-141 112-279 (365)
19 4eqf_A PEX5-related protein; a 99.5 6.4E-15 2.2E-19 137.4 7.0 194 2-199 77-310 (365)
20 2q7f_A YRRB protein; TPR, prot 99.5 3.3E-14 1.1E-18 123.6 11.0 140 2-141 35-191 (243)
21 3hym_B Cell division cycle pro 99.5 8.6E-14 2.9E-18 125.8 13.3 135 3-137 69-221 (330)
22 4gyw_A UDP-N-acetylglucosamine 99.5 2.6E-14 9E-19 150.8 11.4 124 19-142 4-144 (723)
23 2r5s_A Uncharacterized protein 99.5 1.8E-14 6E-19 123.0 8.2 134 2-135 18-170 (176)
24 1hxi_A PEX5, peroxisome target 99.5 5.7E-14 2E-18 114.3 10.3 91 2-113 29-120 (121)
25 1zu2_A Mitochondrial import re 99.5 1.7E-14 5.7E-19 126.1 7.4 100 3-113 15-126 (158)
26 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-14 6.9E-19 127.3 7.8 194 2-199 17-244 (275)
27 2vgx_A Chaperone SYCD; alterna 99.5 8.5E-14 2.9E-18 117.1 11.2 105 9-113 6-124 (148)
28 3upv_A Heat shock protein STI1 99.5 5.3E-14 1.8E-18 112.7 9.4 91 2-113 16-113 (126)
29 3qky_A Outer membrane assembly 99.5 1.2E-13 4E-18 124.1 12.3 112 2-113 27-183 (261)
30 2h6f_A Protein farnesyltransfe 99.5 6.3E-14 2.2E-18 137.0 11.2 139 2-141 143-307 (382)
31 4g1t_A Interferon-induced prot 99.5 6.3E-14 2.2E-18 134.8 11.0 176 2-177 63-292 (472)
32 2xcb_A PCRH, regulatory protei 99.5 1E-13 3.4E-18 114.5 10.4 102 12-113 6-121 (142)
33 2q7f_A YRRB protein; TPR, prot 99.5 2.7E-13 9.4E-18 117.8 13.6 140 2-141 69-225 (243)
34 3qou_A Protein YBBN; thioredox 99.5 5.6E-14 1.9E-18 130.2 9.7 110 2-111 129-252 (287)
35 3hym_B Cell division cycle pro 99.5 1.5E-13 5.1E-18 124.3 12.2 142 2-143 34-193 (330)
36 4gcn_A Protein STI-1; structur 99.5 1.3E-13 4.6E-18 112.8 10.7 88 2-110 20-115 (127)
37 3sz7_A HSC70 cochaperone (SGT) 99.5 1.7E-13 5.8E-18 115.1 11.6 91 2-113 23-114 (164)
38 3cv0_A Peroxisome targeting si 99.5 8.7E-13 3E-17 119.0 17.0 189 2-194 67-310 (327)
39 3uq3_A Heat shock protein STI1 99.5 1.4E-13 4.9E-18 120.0 11.0 140 2-141 50-205 (258)
40 3ieg_A DNAJ homolog subfamily 99.5 6.1E-13 2.1E-17 121.1 15.5 139 3-141 50-220 (359)
41 2ho1_A Type 4 fimbrial biogene 99.5 9.5E-13 3.2E-17 115.8 16.1 170 2-171 49-241 (252)
42 2pzi_A Probable serine/threoni 99.5 4.3E-14 1.5E-18 147.0 8.6 140 1-141 402-566 (681)
43 2vq2_A PILW, putative fimbrial 99.5 4E-13 1.4E-17 114.8 13.1 139 2-140 20-178 (225)
44 4g1t_A Interferon-induced prot 99.5 6.7E-14 2.3E-18 134.7 9.0 193 3-199 226-459 (472)
45 2e2e_A Formate-dependent nitri 99.5 2E-13 6.8E-18 115.4 10.4 112 2-113 22-150 (177)
46 2ho1_A Type 4 fimbrial biogene 99.5 3.8E-13 1.3E-17 118.4 12.5 141 2-142 83-242 (252)
47 4i17_A Hypothetical protein; T 99.5 1.1E-13 3.8E-18 121.3 8.7 113 2-114 54-216 (228)
48 3as5_A MAMA; tetratricopeptide 99.5 1.9E-13 6.4E-18 112.8 9.4 139 2-140 20-175 (186)
49 3uq3_A Heat shock protein STI1 99.5 3.5E-13 1.2E-17 117.5 11.4 185 2-199 17-236 (258)
50 2vsy_A XCC0866; transferase, g 99.5 2.4E-13 8.2E-18 136.6 11.7 140 3-142 2-161 (568)
51 3rkv_A Putative peptidylprolyl 99.5 1.6E-13 5.6E-18 114.9 8.7 90 2-112 23-131 (162)
52 2y4t_A DNAJ homolog subfamily 99.4 7.2E-13 2.5E-17 126.1 14.1 140 3-142 73-244 (450)
53 4gco_A Protein STI-1; structur 99.4 1.5E-13 5.3E-18 112.6 8.2 109 14-143 3-115 (126)
54 3mkr_A Coatomer subunit epsilo 99.4 6.2E-13 2.1E-17 123.9 12.3 134 3-141 114-267 (291)
55 3fp2_A TPR repeat-containing p 99.4 4.1E-13 1.4E-17 130.5 11.4 192 3-199 256-491 (537)
56 2fo7_A Synthetic consensus TPR 99.4 2.5E-12 8.5E-17 100.1 13.7 109 2-110 13-135 (136)
57 1fch_A Peroxisomal targeting s 99.4 2.2E-13 7.6E-18 125.9 8.9 193 3-199 38-280 (368)
58 2y4t_A DNAJ homolog subfamily 99.4 4.1E-13 1.4E-17 127.8 10.7 194 2-199 106-358 (450)
59 3ieg_A DNAJ homolog subfamily 99.4 8.7E-13 3E-17 120.0 12.4 143 2-144 15-189 (359)
60 2vq2_A PILW, putative fimbrial 99.4 1.6E-12 5.5E-17 111.0 13.2 112 2-113 54-183 (225)
61 3as5_A MAMA; tetratricopeptide 99.4 2.2E-12 7.4E-17 106.4 13.2 112 2-113 54-179 (186)
62 3gyz_A Chaperone protein IPGC; 99.4 1.6E-13 5.4E-18 117.4 6.0 86 57-142 49-137 (151)
63 3k9i_A BH0479 protein; putativ 99.4 1.7E-13 5.7E-18 109.5 5.4 91 2-113 2-96 (117)
64 1qqe_A Vesicular transport pro 99.4 6.7E-13 2.3E-17 122.7 10.2 142 2-143 49-233 (292)
65 2xpi_A Anaphase-promoting comp 99.4 1.8E-12 6.1E-17 128.2 13.4 136 3-138 352-504 (597)
66 3fp2_A TPR repeat-containing p 99.4 7.2E-12 2.4E-16 121.7 16.3 173 2-174 288-497 (537)
67 3q49_B STIP1 homology and U bo 99.4 2.3E-12 7.8E-17 103.3 10.6 90 2-112 21-111 (137)
68 2c2l_A CHIP, carboxy terminus 99.4 5.8E-12 2E-16 116.4 14.4 94 2-116 16-110 (281)
69 3u4t_A TPR repeat-containing p 99.4 2.6E-12 8.8E-17 114.0 11.4 111 2-113 49-177 (272)
70 3cv0_A Peroxisome targeting si 99.4 1.5E-12 5.2E-17 117.4 10.0 110 2-111 150-273 (327)
71 4ga2_A E3 SUMO-protein ligase 99.4 2.1E-13 7.1E-18 114.6 3.9 88 28-115 2-102 (150)
72 1elw_A TPR1-domain of HOP; HOP 99.4 7.5E-12 2.6E-16 96.0 12.4 91 2-113 16-107 (118)
73 2pzi_A Probable serine/threoni 99.4 4E-13 1.4E-17 139.7 6.6 113 2-115 445-571 (681)
74 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.9E-11 6.6E-16 108.0 16.5 139 2-141 55-209 (275)
75 2kck_A TPR repeat; tetratricop 99.4 7.7E-12 2.6E-16 95.3 12.0 90 2-112 18-111 (112)
76 2vgx_A Chaperone SYCD; alterna 99.4 5.4E-13 1.8E-17 112.2 5.7 85 57-141 34-121 (148)
77 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.5E-12 8.6E-17 114.0 10.2 140 2-141 16-216 (225)
78 4abn_A Tetratricopeptide repea 99.4 1.1E-12 3.7E-17 130.3 8.8 171 5-176 83-302 (474)
79 2gw1_A Mitochondrial precursor 99.4 5.7E-13 2E-17 128.1 6.5 137 3-140 250-403 (514)
80 1hh8_A P67PHOX, NCF-2, neutrop 99.3 6E-12 2E-16 108.3 11.4 107 2-111 18-154 (213)
81 2xev_A YBGF; tetratricopeptide 99.3 1.1E-11 3.8E-16 98.3 11.2 91 2-113 14-111 (129)
82 2xpi_A Anaphase-promoting comp 99.3 9.3E-12 3.2E-16 123.0 12.9 175 2-176 385-594 (597)
83 1qqe_A Vesicular transport pro 99.3 8.1E-12 2.8E-16 115.3 11.7 142 2-143 89-274 (292)
84 2lni_A Stress-induced-phosphop 99.3 7.2E-12 2.5E-16 98.7 9.6 91 2-113 28-119 (133)
85 2ond_A Cleavage stimulation fa 99.3 4.2E-12 1.4E-16 117.7 9.4 135 4-138 78-232 (308)
86 2dba_A Smooth muscle cell asso 99.3 1.5E-11 5.1E-16 98.9 11.0 92 2-114 40-135 (148)
87 2xcb_A PCRH, regulatory protei 99.3 3E-12 1E-16 105.6 7.0 85 57-141 31-118 (142)
88 1a17_A Serine/threonine protei 99.3 2.1E-11 7.1E-16 99.9 11.9 91 2-113 25-116 (166)
89 2vyi_A SGTA protein; chaperone 99.3 4.1E-11 1.4E-15 93.2 12.9 91 2-113 24-115 (131)
90 2if4_A ATFKBP42; FKBP-like, al 99.3 5E-12 1.7E-16 120.4 9.1 120 1-141 190-331 (338)
91 2vsy_A XCC0866; transferase, g 99.3 2.4E-11 8.2E-16 122.0 14.2 112 2-113 35-163 (568)
92 1p5q_A FKBP52, FK506-binding p 99.3 1E-11 3.6E-16 117.9 10.8 92 2-114 159-266 (336)
93 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.5E-11 5.1E-16 121.9 11.3 93 2-115 280-388 (457)
94 2fbn_A 70 kDa peptidylprolyl i 99.3 2.2E-11 7.4E-16 105.2 10.8 92 2-114 50-158 (198)
95 2gw1_A Mitochondrial precursor 99.3 1.8E-11 6E-16 117.7 11.3 141 2-142 282-448 (514)
96 3mkr_A Coatomer subunit epsilo 99.3 3.7E-11 1.2E-15 111.9 12.9 138 2-141 77-232 (291)
97 1wao_1 Serine/threonine protei 99.3 1.4E-11 4.8E-16 123.1 10.5 93 2-115 18-111 (477)
98 3qky_A Outer membrane assembly 99.2 2.1E-11 7.3E-16 109.3 9.8 112 2-113 64-230 (261)
99 3edt_B KLC 2, kinesin light ch 99.2 2.6E-12 8.8E-17 113.0 3.6 136 3-138 14-198 (283)
100 1na0_A Designed protein CTPR3; 99.2 1.4E-10 4.9E-15 89.4 13.0 90 3-113 22-112 (125)
101 2kat_A Uncharacterized protein 99.2 2.3E-11 8E-16 96.0 8.3 86 7-113 2-88 (115)
102 2ond_A Cleavage stimulation fa 99.2 4.7E-11 1.6E-15 110.7 11.6 107 7-113 33-169 (308)
103 1elr_A TPR2A-domain of HOP; HO 99.2 5.5E-11 1.9E-15 92.8 9.9 88 2-110 16-111 (131)
104 4gcn_A Protein STI-1; structur 99.2 2.6E-11 9E-16 99.0 7.3 68 25-113 9-77 (127)
105 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.9E-10 6.4E-15 101.8 13.4 112 2-113 53-219 (225)
106 1ouv_A Conserved hypothetical 99.2 1.3E-10 4.4E-15 104.4 12.0 135 2-140 18-181 (273)
107 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.6E-10 5.5E-15 99.3 11.5 116 26-141 9-153 (213)
108 3nf1_A KLC 1, kinesin light ch 99.2 2.3E-11 7.9E-16 108.9 6.2 137 2-138 39-224 (311)
109 3ulq_A Response regulator aspa 99.2 1.1E-10 3.7E-15 110.5 10.8 137 2-138 115-293 (383)
110 3urz_A Uncharacterized protein 99.2 9.9E-11 3.4E-15 102.7 9.5 90 26-115 7-125 (208)
111 1ihg_A Cyclophilin 40; ppiase 99.1 3.8E-11 1.3E-15 116.3 7.3 93 2-115 235-344 (370)
112 2ifu_A Gamma-SNAP; membrane fu 99.1 3.4E-11 1.2E-15 111.9 6.4 141 2-143 48-228 (307)
113 1p5q_A FKBP52, FK506-binding p 99.1 1.4E-11 4.8E-16 117.0 2.4 119 4-143 127-264 (336)
114 3upv_A Heat shock protein STI1 99.1 2.2E-10 7.6E-15 91.3 8.5 95 24-139 4-102 (126)
115 3edt_B KLC 2, kinesin light ch 99.1 1.9E-10 6.6E-15 100.9 8.0 109 2-110 55-201 (283)
116 1ouv_A Conserved hypothetical 99.1 6.9E-10 2.4E-14 99.6 11.1 135 3-141 55-218 (273)
117 3nf1_A KLC 1, kinesin light ch 99.1 9.5E-11 3.2E-15 104.8 5.3 108 2-109 81-226 (311)
118 2l6j_A TPR repeat-containing p 99.1 7.8E-11 2.7E-15 90.7 3.7 51 61-111 21-71 (111)
119 3q15_A PSP28, response regulat 99.1 2.7E-10 9.2E-15 108.0 8.2 137 2-138 113-290 (378)
120 1hxi_A PEX5, peroxisome target 99.0 5.7E-10 1.9E-14 90.4 8.5 95 26-141 20-117 (121)
121 4a1s_A PINS, partner of inscut 99.0 1.8E-10 6.1E-15 108.4 6.3 140 2-141 60-255 (411)
122 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 5.4E-11 1.8E-15 117.9 2.5 118 4-142 248-384 (457)
123 2kck_A TPR repeat; tetratricop 99.0 7.6E-10 2.6E-14 84.1 8.1 101 20-141 2-109 (112)
124 3sz7_A HSC70 cochaperone (SGT) 99.0 7.5E-10 2.6E-14 92.6 8.8 99 22-141 9-111 (164)
125 3u3w_A Transcriptional activat 99.0 7E-10 2.4E-14 101.8 9.2 135 2-136 87-264 (293)
126 3sf4_A G-protein-signaling mod 99.0 2.5E-10 8.7E-15 105.9 5.5 139 2-140 21-218 (406)
127 2qfc_A PLCR protein; TPR, HTH, 99.0 1.6E-09 5.6E-14 99.3 10.7 136 2-137 87-265 (293)
128 3q49_B STIP1 homology and U bo 99.0 1.4E-09 4.6E-14 86.9 8.8 103 18-141 3-109 (137)
129 3ma5_A Tetratricopeptide repea 99.0 7.7E-10 2.6E-14 86.4 7.1 74 19-113 2-76 (100)
130 2fo7_A Synthetic consensus TPR 99.0 1.8E-09 6E-14 83.7 9.1 114 27-140 5-134 (136)
131 2fbn_A 70 kDa peptidylprolyl i 99.0 1.8E-10 6.3E-15 99.3 3.4 119 3-142 17-155 (198)
132 3ro3_A PINS homolog, G-protein 99.0 7.9E-10 2.7E-14 88.5 6.4 109 2-110 21-161 (164)
133 4a1s_A PINS, partner of inscut 99.0 1.9E-10 6.4E-15 108.3 2.9 138 3-140 99-294 (411)
134 2ifu_A Gamma-SNAP; membrane fu 98.9 9.1E-10 3.1E-14 102.2 7.3 110 2-113 88-229 (307)
135 2qfc_A PLCR protein; TPR, HTH, 98.9 8E-09 2.8E-13 94.7 13.4 111 28-138 80-225 (293)
136 3ro2_A PINS homolog, G-protein 98.9 3.5E-10 1.2E-14 101.1 3.9 136 2-137 17-211 (338)
137 2hr2_A Hypothetical protein; a 98.9 1.1E-09 3.6E-14 95.7 6.8 96 27-143 15-136 (159)
138 2ooe_A Cleavage stimulation fa 98.9 4.4E-09 1.5E-13 104.4 11.9 110 3-112 334-459 (530)
139 3ulq_A Response regulator aspa 98.9 2.2E-09 7.4E-14 101.5 9.0 109 2-110 155-296 (383)
140 2kc7_A BFR218_protein; tetratr 98.9 1.4E-09 4.7E-14 83.0 6.2 50 64-113 20-70 (99)
141 3qou_A Protein YBBN; thioredox 98.9 9E-10 3.1E-14 101.8 5.1 105 2-106 163-283 (287)
142 3u3w_A Transcriptional activat 98.9 3.4E-09 1.2E-13 97.2 8.7 104 2-105 127-264 (293)
143 1dce_A Protein (RAB geranylger 98.9 6.5E-09 2.2E-13 106.5 11.6 164 6-176 45-236 (567)
144 1na3_A Designed protein CTPR2; 98.9 1.3E-08 4.3E-13 75.5 10.2 70 2-92 21-91 (91)
145 3gw4_A Uncharacterized protein 98.9 3.2E-09 1.1E-13 89.7 7.8 108 1-109 3-138 (203)
146 3sf4_A G-protein-signaling mod 98.9 4.5E-10 1.5E-14 104.3 2.5 140 2-141 59-259 (406)
147 2ooe_A Cleavage stimulation fa 98.9 1.4E-08 4.7E-13 100.8 13.1 107 7-113 255-391 (530)
148 3rkv_A Putative peptidylprolyl 98.9 4.5E-09 1.6E-13 87.6 8.0 95 28-143 16-131 (162)
149 3dra_A Protein farnesyltransfe 98.9 1.6E-08 5.6E-13 96.3 12.9 108 6-113 49-181 (306)
150 3rjv_A Putative SEL1 repeat pr 98.9 8.4E-09 2.9E-13 90.9 9.8 98 8-109 4-120 (212)
151 2l6j_A TPR repeat-containing p 98.8 1.5E-08 5.2E-13 77.6 9.5 77 27-103 8-103 (111)
152 1a17_A Serine/threonine protei 98.8 2.1E-08 7.1E-13 81.8 10.8 86 2-108 59-147 (166)
153 3q15_A PSP28, response regulat 98.8 4.9E-09 1.7E-13 99.2 7.8 111 2-112 153-295 (378)
154 2lni_A Stress-induced-phosphop 98.8 8.4E-09 2.9E-13 80.8 7.6 99 21-140 13-115 (133)
155 3ro2_A PINS homolog, G-protein 98.8 1.5E-09 5.2E-14 96.9 3.5 138 2-139 55-253 (338)
156 2e2e_A Formate-dependent nitri 98.8 3.8E-09 1.3E-13 88.8 5.3 111 33-143 20-149 (177)
157 2r5s_A Uncharacterized protein 98.8 1.9E-08 6.6E-13 85.2 9.7 104 2-106 52-172 (176)
158 3gw4_A Uncharacterized protein 98.8 3.8E-09 1.3E-13 89.3 5.3 109 2-110 38-179 (203)
159 1elw_A TPR1-domain of HOP; HOP 98.8 3.3E-08 1.1E-12 75.3 9.9 94 27-141 8-104 (118)
160 4f3v_A ESX-1 secretion system 98.8 6.7E-09 2.3E-13 98.3 7.2 111 2-113 114-242 (282)
161 3rjv_A Putative SEL1 repeat pr 98.8 1.1E-08 3.7E-13 90.2 7.8 107 3-113 31-163 (212)
162 1na3_A Designed protein CTPR2; 98.8 2.7E-08 9.3E-13 73.6 8.7 69 24-113 9-78 (91)
163 2vyi_A SGTA protein; chaperone 98.8 1.4E-08 4.7E-13 78.7 7.3 99 21-140 9-111 (131)
164 2dba_A Smooth muscle cell asso 98.8 2.3E-08 7.7E-13 80.0 8.7 102 19-141 23-131 (148)
165 1zu2_A Mitochondrial import re 98.8 5.7E-09 1.9E-13 91.0 5.3 108 57-174 15-146 (158)
166 1na0_A Designed protein CTPR3; 98.8 5E-08 1.7E-12 74.8 10.2 98 19-137 3-105 (125)
167 4f3v_A ESX-1 secretion system 98.8 1.6E-08 5.3E-13 95.8 8.6 178 2-183 18-249 (282)
168 3qww_A SET and MYND domain-con 98.7 2.6E-08 9E-13 99.2 10.3 91 3-107 311-411 (433)
169 2xev_A YBGF; tetratricopeptide 98.7 3.1E-08 1.1E-12 78.1 8.5 95 26-141 5-108 (129)
170 2c2l_A CHIP, carboxy terminus 98.7 2.5E-08 8.5E-13 91.9 9.1 101 21-142 1-105 (281)
171 2kc7_A BFR218_protein; tetratr 98.7 2.5E-08 8.6E-13 75.9 7.2 79 27-113 4-96 (99)
172 1hz4_A MALT regulatory protein 98.7 5.5E-08 1.9E-12 90.9 10.9 135 2-136 26-201 (373)
173 1dce_A Protein (RAB geranylger 98.7 2.5E-08 8.7E-13 102.2 9.3 108 6-113 89-227 (567)
174 1wao_1 Serine/threonine protei 98.7 1E-08 3.5E-13 102.4 5.5 91 2-113 52-156 (477)
175 3n71_A Histone lysine methyltr 98.7 4.7E-08 1.6E-12 98.8 10.4 92 2-107 321-422 (490)
176 3k9i_A BH0479 protein; putativ 98.7 2.1E-09 7.1E-14 85.4 -0.7 85 57-141 3-93 (117)
177 1hz4_A MALT regulatory protein 98.6 1.5E-07 5E-12 88.0 11.5 138 3-140 66-246 (373)
178 2if4_A ATFKBP42; FKBP-like, al 98.6 1.7E-08 5.9E-13 95.8 4.8 91 2-113 242-334 (338)
179 3dss_A Geranylgeranyl transfer 98.6 2E-07 6.9E-12 90.0 12.3 143 3-145 42-229 (331)
180 1elr_A TPR2A-domain of HOP; HO 98.6 4.8E-08 1.6E-12 75.8 5.8 92 28-140 9-110 (131)
181 2xm6_A Protein corresponding t 98.6 3.3E-07 1.1E-11 89.9 12.8 101 3-107 236-360 (490)
182 3dra_A Protein farnesyltransfe 98.6 2.3E-07 8E-12 88.3 11.3 109 5-113 84-221 (306)
183 1klx_A Cysteine rich protein B 98.6 2.4E-07 8.2E-12 76.8 10.0 100 4-108 9-127 (138)
184 3q7a_A Farnesyltransferase alp 98.6 1.4E-07 4.7E-12 91.8 9.7 157 4-176 68-252 (349)
185 3bee_A Putative YFRE protein; 98.6 3.8E-07 1.3E-11 71.7 10.6 76 20-113 2-78 (93)
186 2xm6_A Protein corresponding t 98.6 9E-07 3.1E-11 86.8 14.7 101 3-107 128-252 (490)
187 3qwp_A SET and MYND domain-con 98.5 1.6E-07 5.4E-12 93.2 9.0 92 2-107 299-400 (429)
188 3dss_A Geranylgeranyl transfer 98.5 5.7E-07 2E-11 86.8 12.3 108 6-113 90-228 (331)
189 3ly7_A Transcriptional activat 98.5 3.1E-07 1.1E-11 90.0 10.3 108 5-113 214-345 (372)
190 3e4b_A ALGK; tetratricopeptide 98.5 3.1E-07 1.1E-11 90.4 10.3 103 5-113 194-319 (452)
191 1ihg_A Cyclophilin 40; ppiase 98.5 2.1E-07 7.4E-12 89.9 9.0 109 28-141 228-339 (370)
192 4b4t_Q 26S proteasome regulato 98.5 3.8E-07 1.3E-11 86.4 9.8 136 2-137 16-203 (434)
193 3ro3_A PINS homolog, G-protein 98.4 2E-07 6.8E-12 74.2 5.1 83 28-110 14-121 (164)
194 3q7a_A Farnesyltransferase alp 98.4 9.6E-07 3.3E-11 85.9 10.9 109 5-113 104-243 (349)
195 2kat_A Uncharacterized protein 98.4 2.6E-07 9E-12 72.4 4.8 81 61-141 2-85 (115)
196 3e4b_A ALGK; tetratricopeptide 98.3 2.7E-06 9.2E-11 83.7 11.6 101 3-109 230-353 (452)
197 1pc2_A Mitochondria fission pr 98.3 2.5E-06 8.5E-11 73.8 9.3 91 5-113 13-106 (152)
198 3ma5_A Tetratricopeptide repea 98.3 1.6E-06 5.5E-11 67.2 7.1 47 2-48 19-66 (100)
199 1xi4_A Clathrin heavy chain; a 98.3 4.1E-06 1.4E-10 93.7 12.4 180 2-199 1061-1250(1630)
200 2v5f_A Prolyl 4-hydroxylase su 98.2 7.2E-06 2.5E-10 64.7 9.4 68 26-114 8-82 (104)
201 3mv2_B Coatomer subunit epsilo 98.2 3.3E-06 1.1E-10 80.8 7.8 104 3-107 113-240 (310)
202 3u64_A Protein TP_0956; tetrat 98.1 8.6E-06 2.9E-10 77.6 9.6 88 5-113 178-276 (301)
203 3n71_A Histone lysine methyltr 98.1 8.2E-06 2.8E-10 82.4 8.9 89 2-106 363-463 (490)
204 3mv2_B Coatomer subunit epsilo 98.0 8.3E-06 2.8E-10 78.1 7.3 112 2-115 148-290 (310)
205 2v5f_A Prolyl 4-hydroxylase su 98.0 2.4E-05 8.4E-10 61.6 8.5 64 2-86 17-88 (104)
206 1xi4_A Clathrin heavy chain; a 98.0 2.4E-05 8.2E-10 87.7 10.5 130 2-140 997-1165(1630)
207 4b4t_Q 26S proteasome regulato 97.9 5.1E-06 1.8E-10 78.5 3.7 110 2-111 67-208 (434)
208 3u64_A Protein TP_0956; tetrat 97.8 5.7E-05 2E-09 71.9 9.1 91 52-142 171-273 (301)
209 1b89_A Protein (clathrin heavy 97.7 3.8E-05 1.3E-09 77.0 5.8 102 3-115 135-244 (449)
210 1b89_A Protein (clathrin heavy 97.6 1.3E-05 4.4E-10 80.3 1.7 93 2-104 73-174 (449)
211 3bee_A Putative YFRE protein; 97.4 0.001 3.5E-08 51.8 9.6 50 6-55 25-75 (93)
212 1klx_A Cysteine rich protein B 97.4 0.00099 3.4E-08 54.7 9.8 79 4-86 39-137 (138)
213 1nzn_A CGI-135 protein, fissio 97.3 0.00093 3.2E-08 55.9 9.2 90 6-113 17-109 (126)
214 3ly7_A Transcriptional activat 97.1 0.0015 5E-08 64.0 9.4 129 14-142 184-343 (372)
215 3qwp_A SET and MYND domain-con 97.0 0.00092 3.1E-08 66.1 7.1 74 2-91 341-426 (429)
216 3qww_A SET and MYND domain-con 96.9 0.00057 1.9E-08 67.8 4.4 81 56-136 310-409 (433)
217 4e6h_A MRNA 3'-END-processing 96.9 0.0028 9.7E-08 66.3 9.6 13 278-290 650-662 (679)
218 4e6h_A MRNA 3'-END-processing 96.7 0.0057 2E-07 64.0 9.9 100 8-107 327-463 (679)
219 1pc2_A Mitochondria fission pr 96.4 0.0067 2.3E-07 52.2 7.1 62 5-87 50-114 (152)
220 1y8m_A FIS1; mitochondria, unk 96.3 0.045 1.5E-06 46.6 11.5 70 26-113 42-112 (144)
221 3o48_A Mitochondria fission 1 96.2 0.052 1.8E-06 45.7 11.2 70 26-113 43-113 (134)
222 3ffl_A Anaphase-promoting comp 95.3 0.039 1.3E-06 48.2 7.2 96 3-103 33-147 (167)
223 4g26_A Pentatricopeptide repea 95.1 0.2 6.9E-06 50.1 12.8 102 4-106 84-203 (501)
224 4h7y_A Dual specificity protei 94.9 0.041 1.4E-06 47.6 6.0 98 18-115 7-131 (161)
225 2llv_A Heat shock protein STI1 94.4 0.011 3.9E-07 44.3 1.1 60 137-198 10-71 (71)
226 2uy1_A Cleavage stimulation fa 93.8 0.41 1.4E-05 47.5 11.6 106 2-113 225-355 (493)
227 2uy1_A Cleavage stimulation fa 93.4 0.36 1.2E-05 48.0 10.3 94 7-104 196-312 (493)
228 4g26_A Pentatricopeptide repea 93.1 1 3.4E-05 45.0 13.0 104 2-106 38-168 (501)
229 4gns_B Protein CSD3, chitin bi 93.0 0.35 1.2E-05 51.3 9.9 99 6-104 265-397 (754)
230 2ff4_A Probable regulatory pro 92.5 0.13 4.4E-06 49.8 5.3 50 57-106 184-233 (388)
231 1zbp_A Hypothetical protein VP 92.2 1.8 6.1E-05 40.5 12.4 109 1-113 8-135 (273)
232 1ya0_A SMG-7 transcript varian 91.8 0.4 1.4E-05 48.3 8.2 54 60-113 168-221 (497)
233 3mkq_A Coatomer beta'-subunit; 91.5 1 3.6E-05 45.6 11.0 69 22-103 679-748 (814)
234 1nzn_A CGI-135 protein, fissio 91.1 0.49 1.7E-05 39.3 6.6 60 6-86 54-116 (126)
235 3o48_A Mitochondria fission 1 90.4 0.89 3E-05 38.1 7.7 61 5-86 58-120 (134)
236 3mkq_B Coatomer subunit alpha; 90.2 3.1 0.00011 36.3 11.3 93 2-104 17-115 (177)
237 1y8m_A FIS1; mitochondria, unk 90.1 1.4 4.7E-05 37.4 8.7 61 5-86 57-119 (144)
238 1ya0_A SMG-7 transcript varian 89.7 1 3.5E-05 45.3 8.9 45 4-48 166-211 (497)
239 3mkq_A Coatomer beta'-subunit; 86.5 0.57 2E-05 47.5 4.7 73 27-104 633-707 (814)
240 3ffl_A Anaphase-promoting comp 85.7 0.74 2.5E-05 40.0 4.3 52 58-109 34-94 (167)
241 4gns_B Protein CSD3, chitin bi 83.6 1.4 4.7E-05 46.8 6.1 47 2-48 349-396 (754)
242 1zbp_A Hypothetical protein VP 82.7 2.2 7.7E-05 39.8 6.5 57 57-113 10-66 (273)
243 3kae_A CDC27, possible protein 82.3 3.3 0.00011 36.8 7.0 85 28-112 38-148 (242)
244 2ff4_A Probable regulatory pro 82.2 3.9 0.00013 39.3 8.3 47 2-48 183-230 (388)
245 2v6y_A AAA family ATPase, P60 79.6 4.4 0.00015 30.7 6.2 35 30-78 18-52 (83)
246 2w2u_A Hypothetical P60 katani 79.0 4.8 0.00016 30.7 6.2 37 28-78 24-60 (83)
247 3mkq_B Coatomer subunit alpha; 74.7 7 0.00024 34.0 6.8 43 57-104 18-60 (177)
248 1wfd_A Hypothetical protein 15 73.0 15 0.00052 28.3 7.7 45 6-78 12-56 (93)
249 3txn_A 26S proteasome regulato 72.9 17 0.00058 35.3 9.8 79 28-106 104-209 (394)
250 2lnm_A Protein TIC 40, chlorop 70.5 1.2 4.2E-05 32.1 0.8 49 142-192 4-52 (62)
251 2crb_A Nuclear receptor bindin 69.7 12 0.0004 29.5 6.2 40 28-82 20-59 (97)
252 4h7y_A Dual specificity protei 69.6 13 0.00044 32.0 7.1 56 4-80 74-130 (161)
253 4b4t_R RPN7, 26S proteasome re 68.6 3.6 0.00012 40.0 3.9 80 28-107 136-237 (429)
254 2cpt_A SKD1 protein, vacuolar 68.4 16 0.00056 29.4 7.3 46 6-79 15-60 (117)
255 4b4t_P 26S proteasome regulato 67.2 15 0.00052 35.9 8.2 80 28-107 142-247 (445)
256 3txn_A 26S proteasome regulato 65.7 29 0.00099 33.7 9.7 81 27-107 23-128 (394)
257 2v6x_A Vacuolar protein sortin 64.0 17 0.00059 27.2 6.2 45 6-78 10-54 (85)
258 3kae_A CDC27, possible protein 62.3 73 0.0025 28.2 10.5 108 3-110 75-240 (242)
259 2wpv_A GET4, UPF0363 protein Y 59.9 28 0.00095 32.8 8.1 27 76-102 132-158 (312)
260 3lpz_A GET4 (YOR164C homolog); 59.4 21 0.00072 34.1 7.3 28 75-102 133-160 (336)
261 4a5x_A MITD1, MIT domain-conta 59.2 16 0.00055 27.8 5.2 37 28-78 21-57 (86)
262 2crb_A Nuclear receptor bindin 57.7 10 0.00034 29.9 3.8 28 79-106 16-43 (97)
263 4gq2_M Nucleoporin NUP120; bet 54.7 64 0.0022 34.6 10.9 95 16-110 832-929 (950)
264 4fhn_B Nucleoporin NUP120; pro 50.1 1.1E+02 0.0037 33.4 11.9 94 18-112 836-933 (1139)
265 3spa_A Mtrpol, DNA-directed RN 49.8 93 0.0032 34.4 11.1 46 3-48 140-190 (1134)
266 3ax2_A Mitochondrial import re 47.2 22 0.00076 26.5 4.1 32 82-113 21-52 (73)
267 1qsa_A Protein (soluble lytic 44.6 76 0.0026 32.5 9.1 50 57-106 298-347 (618)
268 2dl1_A Spartin; SPG20, MIT, st 44.4 29 0.00098 28.2 4.7 35 28-76 27-61 (116)
269 2v6y_A AAA family ATPase, P60 43.3 32 0.0011 25.9 4.6 18 89-106 22-39 (83)
270 4b4t_S RPN3, 26S proteasome re 42.3 31 0.0011 34.9 5.6 55 57-113 244-305 (523)
271 3t5x_A PCI domain-containing p 41.6 29 0.001 30.3 4.8 35 78-112 14-48 (203)
272 4a5x_A MITD1, MIT domain-conta 38.3 37 0.0012 25.8 4.3 21 86-106 24-44 (86)
273 1wy6_A Hypothetical protein ST 35.6 2.1E+02 0.0071 24.4 9.5 103 4-106 21-153 (172)
274 1om2_A Protein (mitochondrial 29.0 34 0.0012 26.8 2.7 32 82-113 24-55 (95)
275 2w2u_A Hypothetical P60 katani 27.4 70 0.0024 24.0 4.2 20 87-106 28-47 (83)
276 4gq2_M Nucleoporin NUP120; bet 27.2 56 0.0019 35.1 4.9 37 69-105 831-867 (950)
277 3myv_A SUSD superfamily protei 27.1 1.1E+02 0.0038 29.5 6.7 48 60-107 164-219 (454)
278 3lew_A SUSD-like carbohydrate 24.8 1.6E+02 0.0055 28.8 7.5 48 60-107 174-232 (495)
279 3re2_A Predicted protein; meni 24.7 98 0.0034 30.3 5.5 43 63-105 276-323 (472)
280 4b4t_R RPN7, 26S proteasome re 23.9 1.9E+02 0.0065 27.6 7.7 73 2-74 143-238 (429)
281 3kez_A Putative sugar binding 23.1 1.3E+02 0.0043 29.2 6.2 47 60-106 170-224 (461)
282 3u84_A Menin; MLL, JUND, ledgf 22.8 1.1E+02 0.0038 30.5 5.5 43 63-105 298-345 (550)
283 3mcx_A SUSD superfamily protei 21.8 1.3E+02 0.0045 29.1 6.1 48 60-107 176-231 (477)
284 4fhn_B Nucleoporin NUP120; pro 21.8 93 0.0032 33.9 5.4 36 70-105 834-869 (1139)
285 2v6x_A Vacuolar protein sortin 20.6 1.1E+02 0.0038 22.6 4.2 19 88-106 23-41 (85)
286 2rpa_A Katanin P60 ATPase-cont 20.6 73 0.0025 23.9 3.0 26 81-106 15-40 (78)
287 2dl1_A Spartin; SPG20, MIT, st 20.4 62 0.0021 26.2 2.8 45 59-111 18-62 (116)
288 3lpz_A GET4 (YOR164C homolog); 20.1 5.5E+02 0.019 24.2 10.6 76 22-106 134-215 (336)
No 1
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.73 E-value=3e-17 Score=139.34 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=123.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
++|+|++|+.+|+++++++|++..++ ++|.+|..+|++++|+..+.++. |..+. ..++++.|+..+
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 96 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDAL 96 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46999999999999999999999977 99999999999999999999943 44333 278999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
.+++++.|++..++..+|.+|..+|++++|+.+|+++++++|.++..+ +.+....++.+.|.+.+..++.++|.
T Consensus 97 ~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 97 QRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999998733 33466778888888888877776664
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.7e-17 Score=147.31 Aligned_cols=161 Identities=14% Similarity=0.061 Sum_probs=127.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------C----------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------P---------- 57 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------l---------- 57 (338)
+.|++++|+..|+++++++|++..++ ++|.++..+|++++|+..|++ +.|.++.. .
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 96 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG 96 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccc
Confidence 47899999999999999999999977 999999999999999999999 45665542 5
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586 58 -RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID 133 (338)
Q Consensus 58 -g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~ 133 (338)
|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++ .++..+ +.+....++.+.|...+.
T Consensus 97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 666533 233455666666666655
Q ss_pred hcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhh
Q 019586 134 SNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQL 190 (338)
Q Consensus 134 ~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~ 190 (338)
.++ ...|+..+++.++|.+. +...+..+++
T Consensus 176 ~al-----------------------~~~P~~~~~~~~la~~~----~~~g~~~~A~ 205 (217)
T 2pl2_A 176 KAL-----------------------EQAPKDLDLRVRYASAL----LLKGKAEEAA 205 (217)
T ss_dssp HHH-----------------------HHSTTCHHHHHHHHHHH----TC--------
T ss_pred HHH-----------------------HhCCCChHHHHHHHHHH----HHccCHHHHH
Confidence 544 45566667777777743 3444444443
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=8.5e-17 Score=169.79 Aligned_cols=140 Identities=23% Similarity=0.246 Sum_probs=123.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y 67 (338)
++|++++|+.+|++||+++|++..++ |||.+|..+|++++|+.+|++ +.|++++ .+|++++|+.+|
T Consensus 21 ~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~ 100 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 100 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 57999999999999999999999988 999999999999999999999 5666655 289999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCCh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++|++++|+++.+|++||.+|..+|++++|+.+|+++++++|+++..+.. +....++.+.+.+.+...+.+.|.
T Consensus 101 ~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999999874433 355667777777777666655444
No 4
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.65 E-value=4.8e-16 Score=127.71 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+.|+|++|+.+|++||+++|+++.+| ++|.+|..+|++ ++|+.+|++||+++|+++.+
T Consensus 25 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 25 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF---------------------QRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH---------------------HHHHHHHHHHHHhhhhhhHH
Confidence 45777777777777777777777766 777777777777 66777777899999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
|+++|.+|..+|++++|+.+|+++++++|++..+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999999874
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=1.2e-15 Score=143.80 Aligned_cols=139 Identities=21% Similarity=0.162 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye 68 (338)
.|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+..|++ +.|.+.. ..|++++|+..|+
T Consensus 148 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555666666666666666555544 566666666666666666655 2333322 2455666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++++++|+++.+|+++|.++..+|++++|+.+|+++++++|.++..+ +.+....++.+.|.+.+..++..+|.
T Consensus 228 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 66666666666666666666666666666666666666666554422 22234445555555555555555554
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=2.6e-15 Score=141.53 Aligned_cols=175 Identities=18% Similarity=0.178 Sum_probs=144.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++++|++...+ ++|.++...|++++|+..|+++ .|.++. ..|++++|+..|
T Consensus 181 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 47899999999999999999999977 9999999999999999999984 454443 279999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVLS 144 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~~ 144 (338)
+++++++|+++.+|+++|.++...|++++|+.+|+++++++|.+...+ +.+....++.+.|...+..++..+|....
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 999999999999999999999999999999999999999999987733 33356778888899999999888887433
Q ss_pred hhhhh----hhh-------cchHHHHHHhHhHHHHhhchhhhh
Q 019586 145 KHRSV----KKL-------FPTANAIKTQENFADENINANIVV 176 (338)
Q Consensus 145 K~~~~----~kl-------~~~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
-...+ .+. ..+.+++...|++.++++++|.+.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 22211 122 223346666788888888888855
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=4.6e-16 Score=152.21 Aligned_cols=143 Identities=10% Similarity=-0.031 Sum_probs=120.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC-HHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR-IGEAKETLRR---VKPAVAD----------GPRGVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~-~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ 66 (338)
..|++++|+.+|+++|+++|++..+| ++|.+|..+|+ +++|+.+|++ +.|.++. .+|++++|+.+
T Consensus 109 ~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~ 188 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF 188 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 35889999999999999999999987 99999999997 9999999999 4555554 27899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhh-cCccHHH-----HHhhhhccc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAI-KTRDDFA-----DENIDSNVD 137 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~-~~~~~~A-----~e~~~~al~ 137 (338)
|++||+++|++..+|+++|.++..+|++++|+.+|+++++++|.+...+..+ ... .+..+.| .+.+..++.
T Consensus 189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988744332 223 3332444 366777777
Q ss_pred CCChhhh
Q 019586 138 VNPIVLS 144 (338)
Q Consensus 138 ~~P~~~~ 144 (338)
++|....
T Consensus 269 l~P~~~~ 275 (382)
T 2h6f_A 269 LVPHNES 275 (382)
T ss_dssp HSTTCHH
T ss_pred HCCCCHH
Confidence 7776543
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=1.4e-15 Score=134.76 Aligned_cols=131 Identities=14% Similarity=0.045 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHc-----------CCHHHHHHHHHh---hCcCCcC----------C
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQ-----------GRIGEAKETLRR---VKPAVAD----------G 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~-----------G~~dEAi~~~~k---~~p~~~d----------~ 56 (338)
+.|++++|+.+|+++++++|++..++ ++|.+|..+ |++++|+..|++ +.|.++. .
T Consensus 51 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 51 KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 47999999999999999999999977 999999999 999999999999 4565554 2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhh
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENID 133 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~ 133 (338)
.|++++|+.+|+++++++ +++.+++++|.+|..+|++++|+.+|+++++++|+++..+. .+....++.+.|.+.+.
T Consensus 131 ~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 899999999999999999 99999999999999999999999999999999999887332 22344555555544443
No 9
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.62 E-value=1.8e-15 Score=132.84 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAP-DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldP-d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ 66 (338)
..|+|++|+.+|+++++++| .+...+ ++|.+|..+|++++|+.+|+++...++. .+|++++|+.+
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 98 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT 98 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH
Confidence 47999999999999999998 777755 9999999999999999999995544443 38999999999
Q ss_pred HHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC--Cccc
Q 019586 67 YERAQQMLKDLE-------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC--KDHI 114 (338)
Q Consensus 67 yekAL~l~Pd~~-------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~--~~~~ 114 (338)
|++++++.|+++ .+|+++|.++..+|++++|+.+|+++++++|. ++..
T Consensus 99 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 99 LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999 67999999999999999999999999999998 6663
No 10
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.61 E-value=2.3e-16 Score=132.78 Aligned_cols=113 Identities=6% Similarity=-0.037 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y 67 (338)
.+|++++|+..|++++..+|+++..+ ++|.+|..+|+|++|+.+|++ +.|.++. ..|++++|+.+|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 35789999999999999999888855 999999999999999999998 5566555 278999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHccCCCCccc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG-SSSIWQPQPCKDHI 114 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~-yekALkl~P~~~~~ 114 (338)
+++++++|+++.+|+++|.+|..+|++++|..+ ++++++++|+++.+
T Consensus 89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 89 RRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 999999999999999999999999998887765 48899999988763
No 11
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.60 E-value=2e-15 Score=132.05 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-------CHH-----HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPD-------NNK-----MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYE 68 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd-------~a~-----a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~ye 68 (338)
+.|+|++|+.+|++||+++|+ +.. +| |+|.++..+|+|++|+..|++ |+..|.
T Consensus 23 ~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k--------------AL~l~n 88 (159)
T 2hr2_A 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK--------------ALHYFN 88 (159)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH--------------HHHhhh
Confidence 468999999999999999999 443 55 999999999999888888844 777788
Q ss_pred HHHHhCCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch
Q 019586 69 RAQQMLKDLESEM----MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT 118 (338)
Q Consensus 69 kAL~l~Pd~~~a~----~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l 118 (338)
++++++|++..+| +++|.+|..+|++++|+.+|+++++++|++..+...+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 8888899999999 9999999999999999999999999999999877665
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=1.2e-14 Score=124.50 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=70.9
Q ss_pred HHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCC
Q 019586 12 AYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDL 77 (338)
Q Consensus 12 ~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~ 77 (338)
.|+++++++|++...+ ++|.+|..+|+|++|+..|++ +.|.++. .+|++++|+.+|++|++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 3445555555555433 555555555555555555554 2333332 1445577888888899999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
+.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999998764
No 13
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1.5e-14 Score=128.61 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=121.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--CCcC--------------CCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP--AVAD--------------GPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--~~~d--------------~lg~~deAi 64 (338)
..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+..|+++.. .++. ..|++++|+
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 57999999999999999999999755 999999999999999999999433 2222 278999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCCh
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
.+|+++++++|+.+.+|.++|.+|..+|++++|+.+|+++++++|.+...+..+ ....+..+.|...+..++..+|.
T Consensus 95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999987733222 23344777788888888888887
Q ss_pred h
Q 019586 142 V 142 (338)
Q Consensus 142 ~ 142 (338)
.
T Consensus 175 ~ 175 (272)
T 3u4t_A 175 I 175 (272)
T ss_dssp C
T ss_pred c
Confidence 4
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.57 E-value=3.2e-14 Score=131.56 Aligned_cols=174 Identities=16% Similarity=0.075 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcCC----------------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVADG---------------------- 56 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~---------------------- 56 (338)
.|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+..|+++ .|.+...
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 5677777777777777777777755 7777777777777777777772 3332221
Q ss_pred ---CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHH
Q 019586 57 ---PRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFA 128 (338)
Q Consensus 57 ---lg~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A 128 (338)
.|++++|+.+|++++++.|+ .+.+++++|.++...|++++|+.+|+++++++|.++.. ++.+....++.+.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 25788888888999999998 88999999999999999999999999999999998763 33345678888889
Q ss_pred HHhhhhcccCCChhhhhhhh----hhhhcch-------HHHHHHhHhH-----------HHHhhchhhhh
Q 019586 129 DENIDSNVDVNPIVLSKHRS----VKKLFPT-------ANAIKTQENF-----------ADENINANIVV 176 (338)
Q Consensus 129 ~e~~~~al~~~P~~~~K~~~----~~kl~~~-------~~ai~~~~~~-----------~e~y~nlg~~~ 176 (338)
...+..++..+|....-... ......+ .+++...|+. ..++.++|.+.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence 99998888888864332222 2222233 2345556665 67777777755
No 15
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.2e-14 Score=144.50 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=125.2
Q ss_pred CCCCH-HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CC---------C
Q 019586 2 QQNNY-IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GP---------R 58 (338)
Q Consensus 2 q~g~~-eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~l---------g 58 (338)
..|+| ++|+.+|++|++++|++..+| ++|.+|..+|++++|+.+|+++....++ .+ |
T Consensus 114 ~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g 193 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSR 193 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhh
Confidence 57899 999999999999999999977 9999999999999999999995444443 36 8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHccCC---CCccc---ccchhhhcCc
Q 019586 59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ--------SRLFDAFLGSSSIWQPQP---CKDHI---LPTTNAIKTR 124 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~l--------Gr~~eAi~~yekALkl~P---~~~~~---l~~l~~~~~~ 124 (338)
++++|+.+|++|++++|+++.+|+++|.+|..+ |++++|+.+|+++++++| .++.. ++.+....++
T Consensus 194 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999 999999999999999999 77763 3334667888
Q ss_pred cHHHHHhhhhcccCCChhh
Q 019586 125 DDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 125 ~~~A~e~~~~al~~~P~~~ 143 (338)
.+.|.+.+..++..+|...
T Consensus 274 ~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCCCH
Confidence 8888888888888777644
No 16
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=3.5e-14 Score=120.27 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+..+.+++...|++...+ ++|.++...+++++|+..+.+ ..|.+.. .+|++++|+.+|
T Consensus 51 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (184)
T 3vtx_A 51 DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAY 130 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHH
Confidence 47899999999999999999999977 999999999999999999999 4455444 289999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.
T Consensus 131 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 131 EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999999999999999999998765
No 17
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.5e-14 Score=127.32 Aligned_cols=141 Identities=14% Similarity=0.091 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-H----------------HHHHHHHcCCHHHHHHHHHh---hCcCCcC------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-N----------------LGICLMKQGRIGEAKETLRR---VKPAVAD------ 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-n----------------LG~~y~~~G~~dEAi~~~~k---~~p~~~d------ 55 (338)
..|+|++|+.+|+++++++|+++.++ . +|.+|..+|++++|+..|++ +.|.++.
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 95 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 47999999999999999999999866 7 99999999999999999999 4555554
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHccCCCCcc--cccchhhhcCccHH
Q 019586 56 ----GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR--LFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDF 127 (338)
Q Consensus 56 ----~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr--~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~ 127 (338)
..|++++|+.+|+++++++|+++.+|+++|.+|..+|+ ...+..+|.+++...|.... ..+......++.+.
T Consensus 96 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~ 175 (208)
T 3urz_A 96 EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175 (208)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHH
Confidence 27899999999999999999999999999999877764 45667778887655443211 11222344566778
Q ss_pred HHHhhhhcccCCChh
Q 019586 128 ADENIDSNVDVNPIV 142 (338)
Q Consensus 128 A~e~~~~al~~~P~~ 142 (338)
|...+..++.++|..
T Consensus 176 A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 176 ARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHhCCCH
Confidence 999999999999974
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=9.7e-14 Score=129.35 Aligned_cols=139 Identities=18% Similarity=0.117 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC--------------------CCC
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD--------------------GPR 58 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d--------------------~lg 58 (338)
.|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+.+|+++ .|.+.. ..|
T Consensus 112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (365)
T 4eqf_A 112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence 4666666666666666666666655 6666666666666666666662 222111 245
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586 59 GVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID 133 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~ 133 (338)
++++|+.+|++++++.|+ .+.+|+++|.+|..+|++++|+.+|+++++++|.++..+ +.+....++.+.|...+.
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 677777777777777777 677777777777777777777777777777777766522 222345555555665555
Q ss_pred hcccCCCh
Q 019586 134 SNVDVNPI 141 (338)
Q Consensus 134 ~al~~~P~ 141 (338)
.++..+|.
T Consensus 272 ~al~~~p~ 279 (365)
T 4eqf_A 272 RALEIQPG 279 (365)
T ss_dssp HHHHHCTT
T ss_pred HHHhcCCC
Confidence 55544443
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=6.4e-15 Score=137.38 Aligned_cols=194 Identities=13% Similarity=0.041 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
+.|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+.+|+++ .|.++. ..|++++|+.+|
T Consensus 77 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL 156 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHH
Confidence 46899999999999999999999977 9999999999999999999994 444443 289999999999
Q ss_pred HHHHHhCCCCHHHHHHH----------HHHHHHCCCHHHHHHHHHHHHccCCC--Ccc---cccchhhhcCccHHHHHhh
Q 019586 68 ERAQQMLKDLESEMMNK----------GGDRVEQSRLFDAFLGSSSIWQPQPC--KDH---ILPTTNAIKTRDDFADENI 132 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nL----------G~~l~~lGr~~eAi~~yekALkl~P~--~~~---~l~~l~~~~~~~~~A~e~~ 132 (338)
++++++.|+...++..+ |.++...|++++|+.+|+++++++|. ++. .++.+....++.+.|...+
T Consensus 157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp HHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999877666655 99999999999999999999999998 554 2333356778888899999
Q ss_pred hhcccCCChhhhhhhhhh----hhc-------chHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 133 DSNVDVNPIVLSKHRSVK----KLF-------PTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 133 ~~al~~~P~~~~K~~~~~----kl~-------~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
..++..+|....-...+. ... .+.+++...|+...++.++|.+. ....++.+++..+...+.+
T Consensus 237 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC----INLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh
Confidence 998888887433222221 222 23346666788888899998844 5555666666655555555
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=3.3e-14 Score=123.58 Aligned_cols=140 Identities=12% Similarity=0.008 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++.+|++...+ .+|.+|...|++++|+..|+++. |..+. ..|++++|+..|
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114 (243)
T ss_dssp -------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHH
Confidence 56899999999999999999999877 99999999999999999999943 43333 278999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++++++.|+...++..+|.++...|++++|+.+|+++++..|.+...+ +.+....++.+.|...+...+..+|.
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999877632 33355667777777777777766664
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.52 E-value=8.6e-14 Score=125.85 Aligned_cols=135 Identities=15% Similarity=0.051 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-CHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-RIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
.|++++|+.+|+++++.+|++...+ .+|.++...| ++++|+.+|+++. |.++. ..|++++|+.+|
T Consensus 69 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3566666666666666666666644 6666666666 6666666666632 22222 145666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhccc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
++++++.|+...+++.+|.++...|++++|+.+|+++++.+|.++.. ++.+....++.+.|...+..++.
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666665542 22223455555555555555444
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=2.6e-14 Score=150.79 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=106.7
Q ss_pred hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586 19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNK 84 (338)
Q Consensus 19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nL 84 (338)
-.|++++++ |||.+|..+|++++|+.+|++ +.|+++. .+|++++|+.+|++|++++|+++.+|++|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 468888877 999999999999999999999 5566655 28999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586 85 GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 85 G~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~ 142 (338)
|.+|..+|++++|+.+|+++++++|+++..+ +.+....++.+.|.+.+..++.++|..
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999998743 334567788888888877777666653
No 23
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.52 E-value=1.8e-14 Score=122.99 Aligned_cols=134 Identities=11% Similarity=-0.008 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc--CC-----------CCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVA--DG-----------PRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~--d~-----------lg~~deAi~~y 67 (338)
+.|++++|+..|+++++++|++..++ ++|.+|..+|++++|+..|+++....+ .. .++..+|+..|
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~ 97 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRL 97 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHH
Confidence 47999999999999999999999977 999999999999999999999554433 21 11234579999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc-----cccchhhhcCccHHHHHhhhhc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH-----ILPTTNAIKTRDDFADENIDSN 135 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~-----~l~~l~~~~~~~~~A~e~~~~a 135 (338)
+++++++|+++.+++++|.++...|++++|+.+|+++++++|.... .++.+....++.+.+...+...
T Consensus 98 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 98 EQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999998633 2223344555555555554443
No 24
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.51 E-value=5.7e-14 Score=114.27 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+.|++++|+..|+++++++|++..+| ++|.++..+|++ ++|+.+|++|++++|+++.+
T Consensus 29 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~---------------------~~A~~~~~~al~l~P~~~~~ 87 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD---------------------GLAIIALNHARMLDPKDIAV 87 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence 47899999999999999999999977 999999999999 56666777799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+++|.+|..+|++++|+.+|+++++++|.+..
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999999999998754
No 25
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.51 E-value=1.7e-14 Score=126.10 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
.+.|++|+..|++|++++|+++++| ++|.++..+++++.+...... +++|+..|++||+++|++..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~-----------~~eAi~~le~AL~ldP~~~~A~ 83 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM-----------IQEAITKFEEALLIDPKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH-----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhH-----------HHHHHHHHHHHHHhCcCcHHHH
Confidence 3568999999999999999999988 899999999998755554443 4899999999999999999999
Q ss_pred HHHHHHHHHCC-----------CHHHHHHHHHHHHccCCCCcc
Q 019586 82 MNKGGDRVEQS-----------RLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 82 ~nLG~~l~~lG-----------r~~eAi~~yekALkl~P~~~~ 113 (338)
+++|.+|..+| ++++|+.+|++|++++|++..
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 99999999885 899999999999999998753
No 26
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=2e-14 Score=127.27 Aligned_cols=194 Identities=11% Similarity=0.042 Sum_probs=138.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC----CCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAP----DNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSH 63 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldP----d~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deA 63 (338)
..|++++|+..|+++++..+ .+...+ ++|.+|...|++++|+.+|+++ .|.++. ..|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 35789999999999999854 344444 9999999999999999999994 444443 28999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+.+|++++++.|++..+|+++|.+|..+|++++|+.+|+++++++|.+.. ....+....+..+.+...+...+...|.
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999874 1111233445666676666665555554
Q ss_pred hhhhh---hhhhhhcc-------hHHHHHH----hHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 142 VLSKH---RSVKKLFP-------TANAIKT----QENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 142 ~~~K~---~~~~kl~~-------~~~ai~~----~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
..... ........ +.+++.. .+...+++.++|.+ +....++.+++..+...+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 177 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY----YLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH----HHHcCCHHHHHHHHHHHHhC
Confidence 22111 11111111 1122222 23447888888884 45556666676666665655
No 27
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=8.5e-14 Score=117.10 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhC
Q 019586 9 AEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQML 74 (338)
Q Consensus 9 Ai~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~ 74 (338)
+...|++++.++|++...+ ++|.++..+|+|++|+..|++ +.|.++. ..|++++|+.+|+++++++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456777788877777755 788888888888888888877 3444443 2677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 75 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 75 Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+++.+|+++|.+|..+|++++|+.+|+++++++|.++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999999999999999999999998876
No 28
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.3e-14 Score=112.66 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+.|+|++|+.+|+++++++|++..++ ++|.+|..+|++ ++|+.+|+++++++|+++.+
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF---------------------PEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCCCcHHH
Confidence 47899999999999999999999977 999999999999 55666677799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccC------CCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQ------PCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~------P~~~~ 113 (338)
|+++|.++..+|++++|+.+|+++++++ |.+..
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~ 113 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHH
Confidence 9999999999999999999999999999 66554
No 29
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.50 E-value=1.2e-13 Score=124.12 Aligned_cols=112 Identities=9% Similarity=0.033 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC---HHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-------------C-----
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN---NKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD-------------G----- 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~---a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-------------~----- 56 (338)
+.|+|++|+..|+++++.+|++ ..++ .+|.+|..+|+|++|+..|+++ .|.++. .
T Consensus 27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence 4799999999999999999998 6665 9999999999999999999994 444433 2
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 ---PRGVDSHLKAYERAQQMLKDLESEM-----------------MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 ---lg~~deAi~~yekAL~l~Pd~~~a~-----------------~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.|++++|+..|+++++..|++..++ +.+|.+|..+|++++|+.+|+++++..|++..
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred cccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence 7899999999999999999987665 88999999999999999999999999998654
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=6.3e-14 Score=137.01 Aligned_cols=139 Identities=6% Similarity=-0.125 Sum_probs=113.2
Q ss_pred CCCC-HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586 2 QQNN-YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKA 66 (338)
Q Consensus 2 q~g~-~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ 66 (338)
.+|+ +++|+.+|++||+++|++..+| ++|.+|..+|++++|+..|++ +.|.+.. .+|++++|+.+
T Consensus 143 ~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 3576 9999999999999999999977 999999999999999999999 4555554 27899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHccCCCCcccccch---hhhcC--ccHHHHHhhhhc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVE-QSRLFDA-----FLGSSSIWQPQPCKDHILPTT---NAIKT--RDDFADENIDSN 135 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~-lGr~~eA-----i~~yekALkl~P~~~~~l~~l---~~~~~--~~~~A~e~~~~a 135 (338)
|+++|+++|++..+|+++|.+|.. .|++++| +.+|+++++++|++...+..+ ....+ ....+.+.+...
T Consensus 223 ~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 999999999999999999999999 6665888 599999999999998733222 22333 344555555444
Q ss_pred ccCCCh
Q 019586 136 VDVNPI 141 (338)
Q Consensus 136 l~~~P~ 141 (338)
..+|.
T Consensus 303 -~~~p~ 307 (382)
T 2h6f_A 303 -QPSHS 307 (382)
T ss_dssp -TTTCC
T ss_pred -ccCCC
Confidence 55554
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=134.85 Aligned_cols=176 Identities=11% Similarity=0.035 Sum_probs=132.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cC-----CcC--------
Q 019586 2 QQNNYIEAEDAYRRALSI---------APDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PA-----VAD-------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel---------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~-----~~d-------- 55 (338)
.+|++++|+.+|++|+++ +|.....| |+|.+|..+|++++|+.+|+++. +. ..+
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 379999999999999997 56677766 99999999999999999999832 21 111
Q ss_pred -------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHccCCCCcccccch-------
Q 019586 56 -------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRV---EQSRLFDAFLGSSSIWQPQPCKDHILPTT------- 118 (338)
Q Consensus 56 -------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~---~lGr~~eAi~~yekALkl~P~~~~~l~~l------- 118 (338)
..+++++|+.+|++|++++|+++.++.++|.++. ..+++++|+.+|+++++++|.++..+..+
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 2457999999999999999999999999998854 56888999999999999999988744332
Q ss_pred hhhcCccHHHHHhhhhcccCCChhhhhhhhhh-----------hhcchHHHHHHhHhHHHHhhchhhhhh
Q 019586 119 NAIKTRDDFADENIDSNVDVNPIVLSKHRSVK-----------KLFPTANAIKTQENFADENINANIVVN 177 (338)
Q Consensus 119 ~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~-----------kl~~~~~ai~~~~~~~e~y~nlg~~~~ 177 (338)
....+..+.+...+..++..+|........+. .+..+.+++...|+...++.++|.+..
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 12234455677778888877877544332222 223334577788999999999998763
No 32
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.49 E-value=1e-13 Score=114.46 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=69.3
Q ss_pred HHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCC
Q 019586 12 AYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDL 77 (338)
Q Consensus 12 ~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~ 77 (338)
.|++++.++|++...+ ++|.++...|+|++|+..|++ ..|.++. ..|++++|+.+|+++++++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3444444444444432 444444444444444444444 2222222 1444577888888899999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.+|+++|.+|..+|++++|+.+|+++++++|.++.
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 999999999999999999999999999999998876
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=2.7e-13 Score=117.76 Aligned_cols=140 Identities=18% Similarity=0.166 Sum_probs=117.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+..|+++ .|.++. ..|++++|+..|
T Consensus 69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 46899999999999999999999977 9999999999999999999994 344333 289999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++++++.|+...+++.+|.++...|++++|+.+|+++++.+|.+...+ +.+....++...|...+...+..+|.
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 999999999999999999999999999999999999999999887632 22244556666666666665554444
No 34
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.49 E-value=5.6e-14 Score=130.22 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=102.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y 67 (338)
+.|++++|+..|+++++++|++..++ ++|.+|..+|++++|+..|+++...+++ ..++.++|+..|
T Consensus 129 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l 208 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQL 208 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHH
Confidence 47999999999999999999999977 9999999999999999999997665554 145778899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
+++++++|+++.+++++|.+|...|++++|+.+|+++++.+|++
T Consensus 209 ~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 209 QQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999988
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=124.26 Aligned_cols=142 Identities=8% Similarity=-0.024 Sum_probs=124.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCC-CHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPR-GVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg-~~deAi~~ 66 (338)
..|+|++|+.+|+++++.+|.+...+ .++.++...|++++|+..++++ .|.++. ..| ++++|+.+
T Consensus 34 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 36899999999999999999998866 8999999999999999999994 444443 278 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhh
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
|+++++++|+++.+|..+|.++...|++++|+.+|++++++.|.+.. .++.+....++.+.|...+..++..+|...
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999999999999999776 333345678888889999999998888743
No 36
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.49 E-value=1.3e-13 Score=112.80 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL--- 77 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~--- 77 (338)
++|+|++|+.+|++||+++|++..+| ++|.+|..+|+|+ +|+.+|++||+++|++
T Consensus 20 ~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~---------------------~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 20 KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFA---------------------ECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH---------------------HHHHHHHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHH---------------------HHHHHHHHHHHhCcccchh
Confidence 47899999999999999999999977 9999999999994 5555566688887765
Q ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 78 ----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 78 ----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
+.+|+++|.++..+|++++|+.+|+++++..|+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 368999999999999999999999999998875
No 37
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.49 E-value=1.7e-13 Score=115.08 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+.|+|++|+.+|+++++++|++..+| ++|.+|..+|+| ++|+.+|+++++++|+++.+
T Consensus 23 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~ 81 (164)
T 3sz7_A 23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH---------------------EKAAEDAELATVVDPKYSKA 81 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence 47899999999999999999999977 999999999999 55666677799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+++|.+|..+|++++|+.+|+++++++|++..
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 999999999999999999999999999999877
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.49 E-value=8.7e-13 Score=119.05 Aligned_cols=189 Identities=14% Similarity=0.036 Sum_probs=139.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD---------------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d---------------------- 55 (338)
..|++++|+.+|+++++++|++...+ .+|.+|...|++++|+..|+++ .|.+..
T Consensus 67 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 67 ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 36788888888888888888888866 8888888899999998888883 232221
Q ss_pred ---CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHH
Q 019586 56 ---GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFAD 129 (338)
Q Consensus 56 ---~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~ 129 (338)
..|++++|+..|+++++..|+...++..+|.++...|++++|+.+|+++++++|.+... ++.+....++.+.|.
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 23577999999999999999999999999999999999999999999999999988763 333356778888898
Q ss_pred HhhhhcccCCChhhhhhhh----hhhhcch-------HHHHHHhHh------------HHHHhhchhhhhhHhhhhhhhh
Q 019586 130 ENIDSNVDVNPIVLSKHRS----VKKLFPT-------ANAIKTQEN------------FADENINANIVVNQTVLAQQRG 186 (338)
Q Consensus 130 e~~~~al~~~P~~~~K~~~----~~kl~~~-------~~ai~~~~~------------~~e~y~nlg~~~~~~~~~d~r~ 186 (338)
..+..++..+|........ ......+ .+++...|+ ...++.++|.+. ....+.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~ 302 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL----NVMNRP 302 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH----HhcCCH
Confidence 8888888877764332211 1122222 335555677 777788888754 333444
Q ss_pred hhhhcccc
Q 019586 187 VQQLAPFG 194 (338)
Q Consensus 187 ~~~~~~~~ 194 (338)
..+...+.
T Consensus 303 ~~A~~~~~ 310 (327)
T 3cv0_A 303 DLVELTYA 310 (327)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 44443333
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.4e-13 Score=120.02 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC-------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----CCCCHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN-------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-----GPRGVDSHLKAYE 68 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~-------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----~lg~~deAi~~ye 68 (338)
..|++++|+.+|+++++++|++ ...+ ++|.+|..+|++++|+.+|+++....+. .+|++++|+..|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE 129 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence 4689999999999999999876 5555 9999999999999999999995443332 2455666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+++...|+.+.+|..+|.++...|++++|+.+|+++++++|.++..+ +.+....++.+.|...+..++..+|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 66666666666666666666666666666666666666666655422 22234555555565555555555554
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.48 E-value=6.1e-13 Score=121.07 Aligned_cols=139 Identities=9% Similarity=0.058 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc---C-----------------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVA---D----------------------- 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~---d----------------------- 55 (338)
.|++++|+.+|+++++++|++...+ .+|.+|...|++++|+..|+++....+ .
T Consensus 50 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555544 555555555555555555555333222 1
Q ss_pred --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHH
Q 019586 56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADE 130 (338)
Q Consensus 56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e 130 (338)
..|++++|+..|++++++.|+.+.++..+|.++...|++++|+.+|++++++.|.++.. ++.+....++.+.+..
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 14566666666666666666666666666666666666666666666666666665542 2222344555555555
Q ss_pred hhhhcccCCCh
Q 019586 131 NIDSNVDVNPI 141 (338)
Q Consensus 131 ~~~~al~~~P~ 141 (338)
.+..++..+|.
T Consensus 210 ~~~~a~~~~~~ 220 (359)
T 3ieg_A 210 EVRECLKLDQD 220 (359)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhhCcc
Confidence 55555555554
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=9.5e-13 Score=115.77 Aligned_cols=170 Identities=13% Similarity=0.008 Sum_probs=122.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++++|++...+ .+|.+|...|++++|+..|+++. |..+. ..|++++|+.+|
T Consensus 49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 128 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 36788888888888888888888866 88888888888888888888843 33332 278888888888
Q ss_pred HHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCChh
Q 019586 68 ERAQQ--MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 68 ekAL~--l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~~ 142 (338)
+++++ ..|....+++.+|.++...|++++|+.+|+++++..|.+... ++.+....++.+.|...+...+...|..
T Consensus 129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 88888 778888888888888888888888888888888888877652 2333566777778888887777777754
Q ss_pred hhhhh----hhhhhcchHHHHHHhHhHHHHhhc
Q 019586 143 LSKHR----SVKKLFPTANAIKTQENFADENIN 171 (338)
Q Consensus 143 ~~K~~----~~~kl~~~~~ai~~~~~~~e~y~n 171 (338)
..... ..........+.....++.+.+.+
T Consensus 209 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 209 ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 33222 222344445565555555554433
No 42
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.48 E-value=4.3e-14 Score=146.96 Aligned_cols=140 Identities=9% Similarity=-0.014 Sum_probs=121.3
Q ss_pred CCCCCHHHHHHHHHHHH--------HhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCC
Q 019586 1 MQQNNYIEAEDAYRRAL--------SIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPR 58 (338)
Q Consensus 1 mq~g~~eeAi~~y~kAL--------eldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg 58 (338)
+..|++++|+..|++++ +.+|++..++ ++|.+|..+|++++|+..|+++ .|.++. .+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 35789999999999999 9999999977 9999999999999999999994 455544 278
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhc
Q 019586 59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSN 135 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~a 135 (338)
++++|+..|++|++++|+++.+|+++|.+|..+|++++ +.+|+++++++|.+...+ +.+....++.+.|.+.+..+
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 999999999999988733 33466778888888888887
Q ss_pred ccCCCh
Q 019586 136 VDVNPI 141 (338)
Q Consensus 136 l~~~P~ 141 (338)
+..+|.
T Consensus 561 l~l~P~ 566 (681)
T 2pzi_A 561 PPTSRH 566 (681)
T ss_dssp CTTSTT
T ss_pred cccCcc
Confidence 765554
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=4e-13 Score=114.75 Aligned_cols=139 Identities=17% Similarity=0.098 Sum_probs=118.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CC-CCHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GP-RGVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~l-g~~deAi~~ 66 (338)
..|++++|+.+|+++++++|++...+ .+|.+|...|++++|+.+|+++ .|..+. .. |++++|+.+
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY 99 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence 46899999999999999999999877 9999999999999999999994 444433 37 999999999
Q ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 67 YERAQQ--MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 67 yekAL~--l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
|+++++ ..|....+++++|.++...|++++|+.+|+++++..|.+...+ +.+....++.+.|...+...+..+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999 6677789999999999999999999999999999999887632 3335567777778777777766555
No 44
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=134.69 Aligned_cols=193 Identities=11% Similarity=-0.032 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcCC----------------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVADG---------------------- 56 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~---------------------- 56 (338)
.|++++|+.+|++++.++|++...+ ++|.+|...|++++|+..|+++ .|.++..
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4678999999999999999999977 9999999999999999999994 4544331
Q ss_pred -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc------ccch-hhhc
Q 019586 57 -------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI------LPTT-NAIK 122 (338)
Q Consensus 57 -------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~------l~~l-~~~~ 122 (338)
...+++|+..|+++++++|.+..+++++|.++..+|++++|+.+|+++++++|.+... ++.+ ....
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC
Confidence 1247889999999999999999999999999999999999999999999999876531 1111 2356
Q ss_pred CccHHHHHhhhhcccCCChhhhhhhhhhhhcch-HHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 123 TRDDFADENIDSNVDVNPIVLSKHRSVKKLFPT-ANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 123 ~~~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~-~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
+..+.|.+.+..++.++|...........+... ..++...|+..+++.++|.+. ...++..+++..+..++.+
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~----~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ----ELNEKMQQADEDSERGLES 459 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH----HHHHHCC------------
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc
Confidence 677889999999999999866544433333222 357788899999999999955 4556677888778887776
No 45
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.47 E-value=2e-13 Score=115.36 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-----------CCCCH--HHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD-----------GPRGV--DSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-----------~lg~~--deAi 64 (338)
..|++++|+..|+++++.+|++...+ .+|.+|...|++++|+.+|+++ .|.++. ..|++ ++|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 46889999999999999999999977 9999999999999999999993 444443 25787 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|.+..
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999999999999999999999999999999999999998765
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=3.8e-13 Score=118.37 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=121.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--CCcC-------------CCCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP--AVAD-------------GPRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--~~~d-------------~lg~~deAi~ 65 (338)
..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+.+|+++.. ..+. ..|++++|+.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 46899999999999999999998877 999999999999999999999665 4443 2789999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~ 142 (338)
+|++++++.|+...++..+|.++..+|++++|+.+|+++++..|.+...+ ..+....++.+.+...+...+...|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 163 YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999877632 223456777777877777777666653
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.1e-13 Score=121.33 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC-----------------CCCCH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD-----------------GPRGV 60 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d-----------------~lg~~ 60 (338)
..|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+..|++ +.|.++. ..|++
T Consensus 54 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 54 NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence 46899999999999999999999977 999999999999999999999 4566551 27999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCH---------------------------HHHHHHHHHHHccCCCC
Q 019586 61 DSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRL---------------------------FDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 61 deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~---------------------------~eAi~~yekALkl~P~~ 111 (338)
++|+.+|+++++++|+ ++.+|+++|.+|..+|+. ++|+.+|+++++++|++
T Consensus 134 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 134 EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999 999999999999999998 88999999999999988
Q ss_pred ccc
Q 019586 112 DHI 114 (338)
Q Consensus 112 ~~~ 114 (338)
..+
T Consensus 214 ~~~ 216 (228)
T 4i17_A 214 TEI 216 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=1.9e-13 Score=112.83 Aligned_cols=139 Identities=13% Similarity=0.095 Sum_probs=113.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++.+|++...+ .+|.++...|++++|+.+|+++. |..+. ..|++++|+.+|
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 99 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL 99 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35899999999999999999998866 99999999999999999999943 33333 268999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
++++++.|+...++..+|.++...|++++|+.+|+++++..|.+...+ +.+....++.+.|...+...+..+|
T Consensus 100 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999876522 2234455666666666655554333
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=3.5e-13 Score=117.52 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCc-------C----------CCCCH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVA-------D----------GPRGV 60 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~-------d----------~lg~~ 60 (338)
..|+|++|+.+|+++++++ ++...+ ++|.+|..+|++++|+..|++ +.|... . ..|++
T Consensus 17 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 4689999999999999999 777766 999999999999999999888 233331 1 27788
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhccc
Q 019586 61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
++|+.+|++++++.|+ +.++..+|++++|+..|++++..+|.++. .++.+....++.+.|...+..++.
T Consensus 96 ~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 96 KKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888888888876 45677777788888888888888888766 333345678888999999999988
Q ss_pred CCChhhhhh----hhhhhhcc-------hHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 138 VNPIVLSKH----RSVKKLFP-------TANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 138 ~~P~~~~K~----~~~~kl~~-------~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
.+|....-. ........ +..++...|+..+++.++|.+. ....++.+++..+...+.+
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ----IAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHh
Confidence 888743322 11222222 2346666788888899998844 4445555555444443333
No 50
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.45 E-value=2.4e-13 Score=136.56 Aligned_cols=140 Identities=10% Similarity=-0.035 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
.|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+.+|+++...+++ .+|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4788889999999999999888866 8999999999999999999884443333 2788999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhc---CccHHHHHhhhhcccCCChh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIK---TRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~---~~~~~A~e~~~~al~~~P~~ 142 (338)
++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+...+. .+.... ++.+.+.+.+..++..+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999998889999999999999999999999999999888776332 224455 67777777777777777653
No 51
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=1.6e-13 Score=114.94 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHHh------------------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSI------------------APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 62 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel------------------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~de 62 (338)
+.|+|++|+.+|++|+.+ +|.+..+| ++|.||..+|+| ++
T Consensus 23 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~---------------------~~ 81 (162)
T 3rkv_A 23 VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL---------------------HE 81 (162)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH---------------------HH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH---------------------HH
Confidence 479999999999999999 66666666 999999999999 55
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
|+.+|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+.
T Consensus 82 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 82 AEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 66667779999999999999999999999999999999999999999987
No 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=7.2e-13 Score=126.12 Aligned_cols=140 Identities=10% Similarity=0.090 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCc---C--------------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVA---D-------------------- 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~---d-------------------- 55 (338)
.|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+..|+++ .|.+. .
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777755 7777777777777777777773 23322 1
Q ss_pred --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHH
Q 019586 56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADE 130 (338)
Q Consensus 56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e 130 (338)
..|++++|+.+|++++++.|++..+++.+|.+|...|++++|+.+|+++++.+|.++..+ +.+....++.+.|..
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 146777777777777777777777777777777777777777777777777777766522 223456667777777
Q ss_pred hhhhcccCCChh
Q 019586 131 NIDSNVDVNPIV 142 (338)
Q Consensus 131 ~~~~al~~~P~~ 142 (338)
.+...+..+|..
T Consensus 233 ~~~~~~~~~p~~ 244 (450)
T 2y4t_A 233 EVRECLKLDQDH 244 (450)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCh
Confidence 777776666653
No 53
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.45 E-value=1.5e-13 Score=112.63 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=89.0
Q ss_pred HHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019586 14 RRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 92 (338)
Q Consensus 14 ~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG 92 (338)
.++..++|+.++.+ ++|.+|..+|+| ++|+.+|++||+++|+++.+|+++|.+|..+|
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 61 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDY---------------------PTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc
Confidence 35566899999977 999999999999 55666667799999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhh
Q 019586 93 RLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 93 r~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
++++|+.+|+++++++|.+...+ +.+....++.+.|.+.+..++.++|...
T Consensus 62 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999998733 3345677777778887777776666533
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.43 E-value=6.2e-13 Score=123.95 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC------------CCCCHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD------------GPRGVDSHLKA 66 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d------------~lg~~deAi~~ 66 (338)
.|++++|+.+|++ |++.+++ ++|.+|..+|++++|+..|+++ .|+... ..|++++|+.+
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3555555555554 4455544 5555566666666666666552 232210 13567777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHH-HHHhhhhcccCCCh
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDF-ADENIDSNVDVNPI 141 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~-A~e~~~~al~~~P~ 141 (338)
|+++++..|+++.+|+++|.++..+|++++|+.+|+++++++|+++..+.. +....|+... +.+.+...+..+|.
T Consensus 189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 777777777777777777777777777777777777777777777663322 2334454443 34455555555554
No 55
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.43 E-value=4.1e-13 Score=130.49 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~ye 68 (338)
.|++++|+.+|++++.++|+ ...+ .+|.+|...|++++|+.+|+++ .|.++. ..|++++|+..|+
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46777777777777777777 5544 7777777777777777777773 333333 2677777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhhh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLSK 145 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K 145 (338)
+++++.|++..+|..+|.++..+|++++|+.+|+++++.+|.++. .++.+....++.+.|...+..++..+|.....
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 777777777777777777777777777777777777777777665 22333455666666666666665555432211
Q ss_pred ---------------------------hhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCC
Q 019586 146 ---------------------------HRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWN 198 (338)
Q Consensus 146 ---------------------------~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~ 198 (338)
+..-..+..+.+++...|+..+++.++|.+. ....+..+++..+...+.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK----LQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHhccHHHHHHHHHHHHH
Confidence 1111122223345666777777888888744 455555566555555555
Q ss_pred C
Q 019586 199 I 199 (338)
Q Consensus 199 ~ 199 (338)
+
T Consensus 491 ~ 491 (537)
T 3fp2_A 491 L 491 (537)
T ss_dssp H
T ss_pred h
Confidence 4
No 56
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=2.5e-12 Score=100.07 Aligned_cols=109 Identities=25% Similarity=0.329 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++.+|++...+ ++|.++...|++++|+.+|+++ .|..+. ..|++++|+.+|
T Consensus 13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35899999999999999999998876 9999999999999999999994 343332 378999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
++++++.|....++..+|.++...|++++|+.+|++++.++|.
T Consensus 93 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999998886
No 57
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.43 E-value=2.2e-13 Score=125.93 Aligned_cols=193 Identities=10% Similarity=0.025 Sum_probs=119.5
Q ss_pred CCCHHHHHH-HHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHH
Q 019586 3 QNNYIEAED-AYRRALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSH 63 (338)
Q Consensus 3 ~g~~eeAi~-~y~kALeldPd~a~-----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deA 63 (338)
.|+|++|+. .|.+++.+.|+++. .+++|.+|...|++++|+..|+++...++. ..|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 577888888 88888888877642 448888888888888888888884433333 27788888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc----------------ch--hhhcCcc
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP----------------TT--NAIKTRD 125 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~----------------~l--~~~~~~~ 125 (338)
+.+|++++++.|+++.+|+.+|.++..+|++++|+.+|++++++.|.+..... .+ ....++.
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 88888888888888888888888888888888888888888888887765332 11 1244555
Q ss_pred HHHHHhhhhcccCCCh--hhhh----hhhhhhhcch-------HHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhcc
Q 019586 126 DFADENIDSNVDVNPI--VLSK----HRSVKKLFPT-------ANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAP 192 (338)
Q Consensus 126 ~~A~e~~~~al~~~P~--~~~K----~~~~~kl~~~-------~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~ 192 (338)
+.|...+...+..+|. .... .........+ .+++...|+...++.++|.+. ....++.+++..
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~ 273 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL----ANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH----HHcCCHHHHHHH
Confidence 5666666666666665 1111 1111122222 234445566666667776633 344455555554
Q ss_pred ccccCCC
Q 019586 193 FGNSWNI 199 (338)
Q Consensus 193 ~~~~~~~ 199 (338)
+...+.+
T Consensus 274 ~~~al~~ 280 (368)
T 1fch_A 274 YRRALEL 280 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444444
No 58
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.43 E-value=4.1e-13 Score=127.80 Aligned_cols=194 Identities=10% Similarity=0.057 Sum_probs=150.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH---HHH-------------HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN---KMC-------------NLGICLMKQGRIGEAKETLRRV---KPAVAD------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a---~a~-------------nLG~~y~~~G~~dEAi~~~~k~---~p~~~d------- 55 (338)
..|++++|+.+|+++++++|++. ..+ .+|.++...|++++|+..|+++ .|.++.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 46899999999999999999987 543 4478899999999999999994 444433
Q ss_pred ---CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---------------cc
Q 019586 56 ---GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---------------PT 117 (338)
Q Consensus 56 ---~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---------------~~ 117 (338)
..|++++|+.+|++++++.|+++.+|+.+|.+|...|++++|+.+|+++++++|.+...+ +.
T Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 289999999999999999999999999999999999999999999999999999987632 33
Q ss_pred hhhhcCccHHHHHhhhhcccCCChhhh--------hhhhhhhhcchH-------HHHHHhHhHHHHhhchhhhhhHhhhh
Q 019586 118 TNAIKTRDDFADENIDSNVDVNPIVLS--------KHRSVKKLFPTA-------NAIKTQENFADENINANIVVNQTVLA 182 (338)
Q Consensus 118 l~~~~~~~~~A~e~~~~al~~~P~~~~--------K~~~~~kl~~~~-------~ai~~~~~~~e~y~nlg~~~~~~~~~ 182 (338)
.....++.+.|...+...+..+|.... ..........+. .++...|+..+++.++|.+ +..
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~----~~~ 341 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA----YLI 341 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH----HHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH----HHH
Confidence 355677888888888888887776311 112222333333 3555677788888888884 455
Q ss_pred hhhhhhhhccccccCCC
Q 019586 183 QQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 183 d~r~~~~~~~~~~~~~~ 199 (338)
..++.+++..+...+.+
T Consensus 342 ~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 66666776666666655
No 59
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.43 E-value=8.7e-13 Score=120.02 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=124.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|+|++|+.+|++++..+|++...+ ++|.+|...|++++|+..|+++ .|.++. ..|++++|+..|
T Consensus 15 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 47999999999999999999999977 9999999999999999999994 444443 278999999999
Q ss_pred HHHHHhCC---CCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHH
Q 019586 68 ERAQQMLK---DLESEMMNK------------GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFAD 129 (338)
Q Consensus 68 ekAL~l~P---d~~~a~~nL------------G~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~ 129 (338)
++++++.| +...++..+ |.++...|++++|+.+|+++++..|.++..+ +.+....++.+.|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999 888888887 7899999999999999999999999987733 33356788888899
Q ss_pred HhhhhcccCCChhhh
Q 019586 130 ENIDSNVDVNPIVLS 144 (338)
Q Consensus 130 e~~~~al~~~P~~~~ 144 (338)
..+...+..+|....
T Consensus 175 ~~~~~~~~~~~~~~~ 189 (359)
T 3ieg_A 175 SDLKAASKLKSDNTE 189 (359)
T ss_dssp HHHHHHHTTCSCCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 999888888886443
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=1.6e-12 Score=110.97 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHc-CCHHHHHHHHHhhCc--CCcC-------------CCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQ-GRIGEAKETLRRVKP--AVAD-------------GPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~-G~~dEAi~~~~k~~p--~~~d-------------~lg~~deAi 64 (338)
..|++++|+.+|++++.++|++...+ ++|.+|... |++++|+.+|+++.. .++. ..|++++|+
T Consensus 54 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 46899999999999999999999977 999999999 999999999999544 4433 278999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC-CCcc
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP-CKDH 113 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P-~~~~ 113 (338)
.+|+++++..|++..++..+|.++...|++++|+.+|+++++..| .+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 134 AYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 999999999999999999999999999999999999999999999 7665
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=2.2e-12 Score=106.37 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+.+|+++. |.++. ..|++++|+.+|
T Consensus 54 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 54 KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 46899999999999999999999977 99999999999999999999943 44333 288999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++++..|+.+.++..+|.++..+|++++|+.+|+++++++|.+..
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999999999999999999999999999998765
No 62
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.41 E-value=1.6e-13 Score=117.40 Aligned_cols=86 Identities=5% Similarity=-0.217 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID 133 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~ 133 (338)
.|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++..+ +.+....++.+.|...+.
T Consensus 49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999998843 344678899999999999
Q ss_pred hcccCCChh
Q 019586 134 SNVDVNPIV 142 (338)
Q Consensus 134 ~al~~~P~~ 142 (338)
.++...|..
T Consensus 129 ~al~l~~~~ 137 (151)
T 3gyz_A 129 LVIQHSNDE 137 (151)
T ss_dssp HHHHHCCCH
T ss_pred HHHHhCCCH
Confidence 988877764
No 63
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.41 E-value=1.7e-13 Score=109.48 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586 2 QQNNYIEAEDAYRRALSI---APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 77 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel---dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~ 77 (338)
..|++++|+.+|++++++ +|++..++ ++|.+|..+|++ ++|+.+|+++++++|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~---------------------~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY---------------------RKAEAVLANGVKQFPNH 60 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCc
Confidence 578999999999999999 57777766 999999999999 55666667799999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.+++++|.++..+|++++|+.+|+++++..|.++.
T Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 61 QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 999999999999999999999999999999998876
No 64
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=6.7e-13 Score=122.67 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=112.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc---C----------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVA---D---------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~---d---------------- 55 (338)
..|+|++|+.+|++|+++.+.. +..| ++|.+|..+|++++|+.+|+++...++ +
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999985422 3344 999999999999999999999432221 1
Q ss_pred CC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc----------cch
Q 019586 56 GP-RGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL----------PTT 118 (338)
Q Consensus 56 ~l-g~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l----------~~l 118 (338)
.. |++++|+.+|++|+++.|.. ..++.++|.+|..+|++++|+.+|++++++.|.+.... +.+
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 24 99999999999999998864 56799999999999999999999999999999876531 222
Q ss_pred hhhcCccHHHHHhhhhcccCCChhh
Q 019586 119 NAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 119 ~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
....++...|...+..++.++|...
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 4567788888999999988888643
No 65
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.40 E-value=1.8e-12 Score=128.17 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~ye 68 (338)
.|++++|+..|++++...|++...+ .+|.+|...|++++|+..|+++ .|.+.. ..|++++|+..|+
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555555555555555555555544 5555555556666665555552 233222 1455555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccC
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~ 138 (338)
+++++.|++..+|+.+|.+|...|++++|+.+|++++++.|.++..+ +.+....++.+.|.+.+...+..
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555554422 12234445555555555444433
No 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.38 E-value=7.2e-12 Score=121.69 Aligned_cols=173 Identities=11% Similarity=0.040 Sum_probs=137.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+..|+++ .|.++. ..|++++|+.+|
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 57899999999999999999999977 9999999999999999999994 454443 289999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---------hhhc----------CccHHH
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---------NAIK----------TRDDFA 128 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---------~~~~----------~~~~~A 128 (338)
++++++.|+++.++.++|.++...|++++|+.+|++++++.|.+......+ .... ++.+.|
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 999999999999999999999999999999999999999999877643322 2333 777888
Q ss_pred HHhhhhcccCCChhhhh----hhhhhhhcchHHHHHHhHhHHHHhhchhh
Q 019586 129 DENIDSNVDVNPIVLSK----HRSVKKLFPTANAIKTQENFADENINANI 174 (338)
Q Consensus 129 ~e~~~~al~~~P~~~~K----~~~~~kl~~~~~ai~~~~~~~e~y~nlg~ 174 (338)
...+..++..+|....- .........+..|+....+.++...+...
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88999888888864432 22233444555566555555554444333
No 67
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=2.3e-12 Score=103.34 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|+|++|+.+|++++.++|++..++ ++|.+|..+|++ ++|+.+|+++++++|+++.+
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~ 79 (137)
T 3q49_B 21 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP---------------------EQALADCRRALELDGQSVKA 79 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCchhHHH
Confidence 46889999999999999999998876 999999999998 55666677799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
|+++|.++..+|++++|+.+|+++++++|.+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 111 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChhHH
Confidence 99999999999999999999999999999843
No 68
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=5.8e-12 Score=116.42 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|+|++|+.+|++|++++|++..++ ++|.+|..+|++ ++|+..|+++++++|++..+
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP---------------------EQALADCRRALELDGQSVKA 74 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHTTSCTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence 46899999999999999999999977 999999999999 55666667799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP 116 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~ 116 (338)
|+++|.+|..+|++++|+.+|+++++++|++...+.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 999999999999999999999999999998865443
No 69
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=2.6e-12 Score=113.99 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSH 63 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deA 63 (338)
..|++++|+.+|+++++ .|.+.. .+ ++|.+|..+|++++|+.+|++ ..|.++. ..|++++|
T Consensus 49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence 46899999999999999 444333 34 999999999999999999999 4454444 28899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.+|+++++++|+.+.+|+++|...+..+++++|+.+|+++++++|.+..
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 177 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchH
Confidence 99999999999999999999995555667999999999999999998865
No 70
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.37 E-value=1.5e-12 Score=117.44 Aligned_cols=110 Identities=22% Similarity=0.205 Sum_probs=100.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++.+|++...+ .+|.+|...|++++|+.+|+++ .|.++. ..|++++|+.+|
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35788999999999999999999877 9999999999999999999994 444433 288999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
++++++.|+...+|..+|.++..+|++++|+.+|++++++.|..
T Consensus 230 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 230 NRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999983
No 71
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.37 E-value=2.1e-13 Score=114.58 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 94 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~ 94 (338)
+||.++..+|++++|+..|+++.+..++ ..|++++|+.+|+++++++|+++.+|+++|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 5899999999999999999997776654 279999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCCcccc
Q 019586 95 FDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 95 ~eAi~~yekALkl~P~~~~~l 115 (338)
++|+.+|+++++++|+++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~ 102 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLV 102 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999998743
No 72
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.37 E-value=7.5e-12 Score=96.02 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|++++|+.+|++++..+|++...+ ++|.+|..+|++ ++|+.+|++++++.|+++.+
T Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~ 74 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY---------------------QKAYEDGCKTVDLKPDWGKG 74 (118)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH---------------------HHHHHHHHHHHHhCcccHHH
Confidence 46899999999999999999999977 999999999999 55666667799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++++|.++..+|++++|+.+|+++++++|.++.
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999998866
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=4e-13 Score=139.69 Aligned_cols=113 Identities=9% Similarity=-0.004 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y 67 (338)
+.|++++|+..|+++++++|++..+| ++|.+|..+|++++|+..|++ +.|.++. .+|++++ +.+|
T Consensus 445 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~ 523 (681)
T 2pzi_A 445 DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY 523 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH
T ss_pred hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH
Confidence 46899999999999999999999977 999999999999999999999 5566655 2789999 9999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
++|++++|++..+|+++|.+|..+|++++|+.+|+++++++|.+...+
T Consensus 524 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 571 (681)
T 2pzi_A 524 QTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTAR 571 (681)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHH
Confidence 999999999999999999999999999999999999999999987633
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.36 E-value=1.9e-11 Score=107.96 Aligned_cols=139 Identities=14% Similarity=-0.004 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+.+|+++ .|.++. ..|++++|+.+|
T Consensus 55 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 55 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 134 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHH
Confidence 46899999999999999999999977 9999999999999999999994 454443 289999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch--hhhcCccHHHHHhhhhcccCCCh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT--NAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l--~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++++++.|++...+..++.. ...|++++|+.+|++++...|.+...+... ....+....+...+...+..+|.
T Consensus 135 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 135 LAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp HHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred HHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 99999999999777766644 667999999999999999999876532221 33444445567777777766664
No 75
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.36 E-value=7.7e-12 Score=95.32 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC--CH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD--LE 78 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd--~~ 78 (338)
..|++++|+.+|+++++++|++...+ ++|.+|..+|++ ++|+.+|++++++.|+ ..
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 18 DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY---------------------EEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHTSCCTTCH
T ss_pred HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHHhCcccchH
Confidence 57899999999999999999999877 999999999999 5566666779999999 99
Q ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCc
Q 019586 79 SEMMNKGGDRVEQ-SRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 79 ~a~~nLG~~l~~l-Gr~~eAi~~yekALkl~P~~~ 112 (338)
.+|+++|.++..+ |++++|+.+|++++...|.++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999999 999999999999999999764
No 76
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.35 E-value=5.4e-13 Score=112.15 Aligned_cols=85 Identities=6% Similarity=-0.158 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID 133 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~ 133 (338)
.|++++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++..+ +.+....++.+.|...+.
T Consensus 34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998733 334667888888888888
Q ss_pred hcccCCCh
Q 019586 134 SNVDVNPI 141 (338)
Q Consensus 134 ~al~~~P~ 141 (338)
.++..+|.
T Consensus 114 ~al~~~p~ 121 (148)
T 2vgx_A 114 LAQELIAN 121 (148)
T ss_dssp HHHHHHTT
T ss_pred HHHHHCcC
Confidence 88776654
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.35 E-value=2.5e-12 Score=113.97 Aligned_cols=140 Identities=9% Similarity=0.090 Sum_probs=113.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH---HHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC-------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN---KMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD------------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a---~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d------------------- 55 (338)
+.|+|++|+..|+++++..|++. .++ ++|.+|..+|+|++|+..|++ ..|.++.
T Consensus 16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence 46899999999999999999864 344 999999999999999999999 4555543
Q ss_pred ------------CCCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 56 ------------GPRGVDSHLKAYERAQQMLKDLESEM-----------------MNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 56 ------------~lg~~deAi~~yekAL~l~Pd~~~a~-----------------~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
..|++++|+..|+++++..|+...++ +.+|.+|..+|++.+|+..|+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 14689999999999999999987554 6789999999999999999999999
Q ss_pred cCCCCcc------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 107 PQPCKDH------ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 107 l~P~~~~------~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
..|+++. .++.+....++.+.|.+.+.......|.
T Consensus 176 ~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 176 DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 9999763 2233355677777777777665555554
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=1.1e-12 Score=130.33 Aligned_cols=171 Identities=12% Similarity=0.016 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH-HHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI-GEAKETLRR---VKPAVAD----------GPRGVDSHLKAYER 69 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~-dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yek 69 (338)
++++|+..+.+++...|+.+.++ ++|.+|..+|+| ++|+.+|++ +.|.+++ ..|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46788888999888899999977 999999999999 999999999 4555544 27899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHccCCCCcccccch---hhhc--------CccHHHH
Q 019586 70 AQQMLKDLESEMMNKGGDRVEQ---------SRLFDAFLGSSSIWQPQPCKDHILPTT---NAIK--------TRDDFAD 129 (338)
Q Consensus 70 AL~l~Pd~~~a~~nLG~~l~~l---------Gr~~eAi~~yekALkl~P~~~~~l~~l---~~~~--------~~~~~A~ 129 (338)
|++++|+ ..+|.++|.+|..+ |++++|+.+|+++++++|.++..+..+ .... ++.+.|.
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999 79999999999999 999999999999999999988744332 3444 7788889
Q ss_pred HhhhhcccCCC---hhhhhhh----hhhh-------hcchHHHHHHhHhHHHHhhchhhhh
Q 019586 130 ENIDSNVDVNP---IVLSKHR----SVKK-------LFPTANAIKTQENFADENINANIVV 176 (338)
Q Consensus 130 e~~~~al~~~P---~~~~K~~----~~~k-------l~~~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
..+..++..+| ....-.. .... +..+.+++...|+..+++.+++.+.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999998888 4332211 1112 2233446677788888888888865
No 79
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.35 E-value=5.7e-13 Score=128.14 Aligned_cols=137 Identities=11% Similarity=0.073 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
.|++++|+.+|+++++.+|+ ...+ ++|.+|...|++++|+..|+++...++. ..|++++|+.+|+
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46667777777777777666 5544 6666676677777776666663322222 1566666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
+++++.|++..++..+|.++...|++++|+.+|+++++..|.++..+ +.+....++.+.|...+..++..+|
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 66666666666666666666666666666666666666666655422 2223445555555555555544443
No 80
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=6e-12 Score=108.34 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|+|++|+.+|++++ +| ++..+ ++|.+|..+|++++|+.+|+++ .|.++. ..|++++|+.+|
T Consensus 18 ~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 94 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 94 (213)
T ss_dssp HTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHH
Confidence 3577888888888874 44 44544 8888888888887777777662 233322 156666666666
Q ss_pred HHHHHhCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 68 ERAQQMLKDLE----------------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 68 ekAL~l~Pd~~----------------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
++++++.|++. .+|+++|.+|..+|++++|+.+|+++++++|.+
T Consensus 95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 66666555544 666666666666666666666666666666654
No 81
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.32 E-value=1.1e-11 Score=98.28 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH---HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN---KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 77 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a---~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~ 77 (338)
..|+|++|+..|+++++.+|++. .++ ++|.+|..+|++ ++|+.+|+++++..|++
T Consensus 14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~---------------------~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF---------------------QLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTS
T ss_pred HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH---------------------HHHHHHHHHHHHHCCCC
Confidence 47899999999999999999988 444 999999999999 55666667799999999
Q ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 78 ---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 78 ---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.+++++|.++..+|++++|+.+|+++++..|+++.
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 899999999999999999999999999999998765
No 82
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.32 E-value=9.3e-12 Score=123.03 Aligned_cols=175 Identities=8% Similarity=-0.057 Sum_probs=138.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
+.|++++|+.+|+++++++|++...| .+|.+|...|++++|+..|+++. |.+.. ..|++++|+.+|
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 47999999999999999999999877 99999999999999999999943 33332 278999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc------CCCC-cc---cccchhhhcCccHHHHHhhhhccc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP------QPCK-DH---ILPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl------~P~~-~~---~l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
++++++.|+++.+|+.+|.+|...|++++|+.+|++++++ +|.+ .. .++.+....++.+.|.+.+...+.
T Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 4543 22 223336688889999999998888
Q ss_pred CCChhhhhh----hhhhhhcc-------hHHHHHHhHhHHHHhhchhhhh
Q 019586 138 VNPIVLSKH----RSVKKLFP-------TANAIKTQENFADENINANIVV 176 (338)
Q Consensus 138 ~~P~~~~K~----~~~~kl~~-------~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
.+|....-. ........ +.+++...|+..+++.+++.++
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 887533221 11222222 3346666777777787777754
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=8.1e-12 Score=115.34 Aligned_cols=142 Identities=11% Similarity=0.012 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC------HHHH-HHHHHHHHc-CCHHHHHHHHHhhC---cCCcC---------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN------NKMC-NLGICLMKQ-GRIGEAKETLRRVK---PAVAD--------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~------a~a~-nLG~~y~~~-G~~dEAi~~~~k~~---p~~~d--------------- 55 (338)
.+|++++|+.+|++|+++.+.. +..+ ++|.+|..+ |++++|+.+|+++. |....
T Consensus 89 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4689999999999999998754 2244 999999996 99999999999933 32211
Q ss_pred -CCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc-----ch----
Q 019586 56 -GPRGVDSHLKAYERAQQMLKDLES-------EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP-----TT---- 118 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~l~Pd~~~-------a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~-----~l---- 118 (338)
.+|++++|+.+|++++++.|+... +|+++|.++..+|++++|+.+|+++++++|....... .+
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 279999999999999999988653 6899999999999999999999999999998765211 11
Q ss_pred -hhhcCccHHHHHhhhhcccCCChhh
Q 019586 119 -NAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 119 -~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
....+....+...+...+.++|...
T Consensus 249 ~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HcCCHHHHHHHHHHhccCCccHHHHH
Confidence 0123445556777777777777643
No 84
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.31 E-value=7.2e-12 Score=98.66 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|++++|+.+|++++.++|++...+ ++|.+|..+|++ ++|+.+|++++++.|+++.+
T Consensus 28 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF---------------------QLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH---------------------HHHHHHHHHHHHhCCCchHH
Confidence 35778888888888888888777765 888888888877 66677777799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++++|.++..+|++++|+.+|+++++++|.+..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 119 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchH
Confidence 999999999999999999999999999998765
No 85
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=4.2e-12 Score=117.73 Aligned_cols=135 Identities=10% Similarity=-0.018 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHH-hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-----------CCCCHHHHHHHH
Q 019586 4 NNYIEAEDAYRRALS-IAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD-----------GPRGVDSHLKAY 67 (338)
Q Consensus 4 g~~eeAi~~y~kALe-ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-----------~lg~~deAi~~y 67 (338)
+++++|+..|++|++ ++|++..+| ++|.++..+|++++|+..|+++ .|.++. ..|++++|+..|
T Consensus 78 ~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 456777777777777 577777666 7777777777777777777773 333332 145777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccC
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVE-QSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~-lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~ 138 (338)
++|+++.|....+|...+.+... .|++++|+.+|+++++++|.++.++. .+....++.+.+...+..++..
T Consensus 158 ~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777766666555544332 57777777777777777776655222 2234456666666666666653
No 86
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-11 Score=98.86 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC---HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN---NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 77 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~---a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~ 77 (338)
..|+|++|+.+|+++++++|++ ...+ ++|.+|..+|++ ++|+.+|++++++.|++
T Consensus 40 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 40 KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY---------------------DKAETEASKAIEKDGGD 98 (148)
T ss_dssp TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHTSCC
T ss_pred HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH---------------------HHHHHHHHHHHhhCccC
Confidence 4688888888888888888876 5544 888888888888 56666677799999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
+.+|+++|.++..+|++++|+.+|+++++++|.+...
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 9999999999999999999999999999999988763
No 87
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.30 E-value=3e-12 Score=105.56 Aligned_cols=85 Identities=11% Similarity=-0.088 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhh
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENID 133 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~ 133 (338)
.|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|.++.. ++.+....++.+.|...+.
T Consensus 31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999873 3334667888888888888
Q ss_pred hcccCCCh
Q 019586 134 SNVDVNPI 141 (338)
Q Consensus 134 ~al~~~P~ 141 (338)
.++..+|.
T Consensus 111 ~al~~~p~ 118 (142)
T 2xcb_A 111 SARALAAA 118 (142)
T ss_dssp HHHHHHHT
T ss_pred HHHHhCCC
Confidence 87776664
No 88
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.30 E-value=2.1e-11 Score=99.87 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|++++|+.+|++++.++|++...+ ++|.++..+|++ ++|+.+|+++++++|+++.+
T Consensus 25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------------GYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCcccHHH
Confidence 46899999999999999999998877 999999999999 55666667799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+++|.++..+|++++|+.+|+++++++|.+..
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 116 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKD 116 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999998765
No 89
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.29 E-value=4.1e-11 Score=93.23 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|++++|+.+|++++.++|++...+ ++|.+|...|++ ++|+.+|++++++.|+++.+
T Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY---------------------AGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch---------------------HHHHHHHHHHHhcCccCHHH
Confidence 36889999999999999999888866 999999999988 55666667799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++.+|.++..+|++++|+.+|+++++++|.+..
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999999999998765
No 90
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.29 E-value=5e-12 Score=120.41 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHH-----------------HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNK-----------------MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 62 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~-----------------a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~de 62 (338)
++.|+|++|+.+|++|+.+.|++.. .| |+|.||..+|+| ++
T Consensus 190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~---------------------~~ 248 (338)
T 2if4_A 190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY---------------------DE 248 (338)
T ss_dssp CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC---------------------HH
T ss_pred HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH---------------------HH
Confidence 3579999999999999999998762 44 999999999999 55
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchh----hhcCccHHHHHhhhhcccC
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTN----AIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~----~~~~~~~~A~e~~~~al~~ 138 (338)
|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|.+..++..+. ........+...+...+..
T Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 666677799999999999999999999999999999999999999999887544331 1223333344455555554
Q ss_pred CCh
Q 019586 139 NPI 141 (338)
Q Consensus 139 ~P~ 141 (338)
+|.
T Consensus 329 ~p~ 331 (338)
T 2if4_A 329 KDE 331 (338)
T ss_dssp ---
T ss_pred CCC
Confidence 554
No 91
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.29 E-value=2.4e-11 Score=121.99 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
+.|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+.+|+++ .|.++. ..|++++|+.+|
T Consensus 35 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 114 (568)
T 2vsy_A 35 GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114 (568)
T ss_dssp HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 36899999999999999999999977 9999999999999999999994 455443 289999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHccCCCCcc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQ---SRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~l---Gr~~eAi~~yekALkl~P~~~~ 113 (338)
+++++++|++..++.++|.++..+ |++++|+.+|+++++.+|.+..
T Consensus 115 ~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 999999999999999999999999 9999999999999999998765
No 92
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.29 E-value=1e-11 Score=117.90 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC---------------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN---------------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~---------------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~ 65 (338)
+.|+|++|+.+|++|+.++|++ ..+| ++|.||..+|+| ++|+.
T Consensus 159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---------------------~~A~~ 217 (336)
T 1p5q_A 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF---------------------SAAIE 217 (336)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHHH
T ss_pred HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH---------------------HHHHH
Confidence 4689999999999999999998 4555 999999999999 55666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
+|++|++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+...
T Consensus 218 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 266 (336)
T 1p5q_A 218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266 (336)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 6677999999999999999999999999999999999999999998763
No 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.27 E-value=1.5e-11 Score=121.89 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC---------------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN---------------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~---------------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~ 65 (338)
+.|+|++|+.+|++|++++|++ ..+| |+|.||..+|+| ++|+.
T Consensus 280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---------------------~~A~~ 338 (457)
T 1kt0_A 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY---------------------TKAVE 338 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH---------------------HHHHH
Confidence 4789999999999999999998 4555 999999999999 55666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
+|++|++++|++..+|+++|.+|..+|++++|+.+|+++++++|.+..++
T Consensus 339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 67779999999999999999999999999999999999999999988744
No 94
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.27 E-value=2.2e-11 Score=105.19 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH----------------HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN----------------KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a----------------~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi 64 (338)
..|+|++|+.+|++++.+.|++. ..+ ++|.+|..+|+| ++|+
T Consensus 50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------------------~~A~ 108 (198)
T 2fbn_A 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY---------------------PKAI 108 (198)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH---------------------HHHH
Confidence 46899999999999999999886 555 999999999999 5566
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+..+
T Consensus 109 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 66677999999999999999999999999999999999999999998763
No 95
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.8e-11 Score=117.73 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+.+|++++.++|++...+ ++|.+|...|++++|+..|+++ .|.++. ..|++++|+.+|
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46899999999999999999999877 9999999999999999999994 444433 378999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---------ccchhhh---cCccHHHHHhhhhc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---------LPTTNAI---KTRDDFADENIDSN 135 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---------l~~l~~~---~~~~~~A~e~~~~a 135 (338)
++++++.|+++.+|+++|.++...|++++|+.+|++++++.|.+... ++.+... .++.+.|...+..+
T Consensus 362 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988641 1222345 67777888888888
Q ss_pred ccCCChh
Q 019586 136 VDVNPIV 142 (338)
Q Consensus 136 l~~~P~~ 142 (338)
+..+|..
T Consensus 442 ~~~~~~~ 448 (514)
T 2gw1_A 442 SKLDPRS 448 (514)
T ss_dssp HHHCTTC
T ss_pred HHhCccc
Confidence 7777754
No 96
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.26 E-value=3.7e-11 Score=111.92 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=109.1
Q ss_pred CCCCHHHHHHHHHHHHHh--CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------CCCCHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSI--APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel--dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------~lg~~deAi~~ye 68 (338)
..+++++|+..|++.+.. +|++..++ .+|.+|...|++++|+..|++ |.+++ .+|++++|+..|+
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 357899999999999876 59999866 999999999999999999998 55444 2899999999999
Q ss_pred HHHHhCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCCCh
Q 019586 69 RAQQMLKDLESEMMNKG--GDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG--~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++++++|+........| .++...|++++|+.+|+++++..|.++.++. .+....++.+.|.+.+..++..+|.
T Consensus 155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999865544433 3344568999999999999999998877433 2356777888888777776665554
No 97
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.26 E-value=1.4e-11 Score=123.13 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+.|+|++|+.+|++|++++|++..++ ++|.+|..+|++ ++|+.+|++|++++|+++.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~---------------------~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------------GYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHSCTTCHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence 57999999999999999999999977 999999999999 45556666688889999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
|+++|.+|..+|++++|+.+|+++++++|.+...+
T Consensus 77 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 111 (477)
T 1wao_1 77 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111 (477)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999988887633
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=2.1e-11 Score=109.30 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH---HHH-HHHHHHHH--------cCCHHHHHHHHHhh---CcCCcC-----------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN---KMC-NLGICLMK--------QGRIGEAKETLRRV---KPAVAD----------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a---~a~-nLG~~y~~--------~G~~dEAi~~~~k~---~p~~~d----------- 55 (338)
+.|+|++|+..|++++++.|++. .++ ++|.+|.. +|++++|+..|+++ .|.++.
T Consensus 64 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~ 143 (261)
T 3qky_A 64 QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL 143 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH
Confidence 47999999999999999998653 344 99999999 99999999999994 454432
Q ss_pred ----------------CCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHc
Q 019586 56 ----------------GPRGVDSHLKAYERAQQMLKD---LESEMMNKGGDRVEQ----------SRLFDAFLGSSSIWQ 106 (338)
Q Consensus 56 ----------------~lg~~deAi~~yekAL~l~Pd---~~~a~~nLG~~l~~l----------Gr~~eAi~~yekALk 106 (338)
..|++++|+..|+++++..|+ .+.+++.+|.+|..+ |++++|+.+|+++++
T Consensus 144 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 144 RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 168999999999999999998 568999999999987 999999999999999
Q ss_pred cCCCCcc
Q 019586 107 PQPCKDH 113 (338)
Q Consensus 107 l~P~~~~ 113 (338)
..|+++.
T Consensus 224 ~~p~~~~ 230 (261)
T 3qky_A 224 IFPDSPL 230 (261)
T ss_dssp HCTTCTH
T ss_pred HCCCChH
Confidence 9999875
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=2.6e-12 Score=112.98 Aligned_cols=136 Identities=14% Similarity=0.014 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHHHhC--------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC--------cCCcC----------
Q 019586 3 QNNYIEAEDAYRRALSIA--------PDNNKMC-NLGICLMKQGRIGEAKETLRRVK--------PAVAD---------- 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeld--------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~--------p~~~d---------- 55 (338)
.|++++|+.+|++|+++- |.....+ ++|.+|..+|++++|+.+|+++. +..+.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 577888888888888852 3333344 89999999999999999998833 22222
Q ss_pred ---CCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc--------CCCCcc---
Q 019586 56 ---GPRGVDSHLKAYERAQQM--------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP--------QPCKDH--- 113 (338)
Q Consensus 56 ---~lg~~deAi~~yekAL~l--------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl--------~P~~~~--- 113 (338)
..|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++++ .|....
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 378999999999999988 4667788899999999999999999999999888 443333
Q ss_pred cccchhhhcCccHHHHHhhhhcccC
Q 019586 114 ILPTTNAIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 114 ~l~~l~~~~~~~~~A~e~~~~al~~ 138 (338)
.++.+....++.+.|...+...+..
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2233355667777777777666643
No 100
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.23 E-value=1.4e-10 Score=89.40 Aligned_cols=90 Identities=26% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
.|++++|+.+|++++..+|++...+ ++|.++...|++ ++|+.+|++++++.|+.+.++
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY---------------------DEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH---------------------HHHHHHHHHHHHhCCccHHHH
Confidence 5778888888888888888777755 888888888877 566666777899999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.+|.++...|++++|+.+|+++++++|.+..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999999999998766
No 101
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.23 E-value=2.3e-11 Score=95.97 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 019586 7 IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG 85 (338)
Q Consensus 7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG 85 (338)
++|+..|+++++.+|++...+ ++|.+|..+|++ ++|+.+|+++++++|++..+|+++|
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~~~~la 60 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF---------------------DAALPHLRAALDFDPTYSVAWKWLG 60 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 468999999999999999977 999999999999 5566666779999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 86 GDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 86 ~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+|..+|++++|+.+|++++++.|....
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 61 KTLQGQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999886543
No 102
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=4.7e-11 Score=110.65 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHH-HHHHHHHH-------cCCH-------HHHHHHHHhhCc-CCcC-------------CC
Q 019586 7 IEAEDAYRRALSIAPDNNKMC-NLGICLMK-------QGRI-------GEAKETLRRVKP-AVAD-------------GP 57 (338)
Q Consensus 7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~-------~G~~-------dEAi~~~~k~~p-~~~d-------------~l 57 (338)
++|+..|++|+..+|+++.+| ++|.++.. .|++ ++|+..|+++.. ..|+ ..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999977 99988864 5886 899999999443 2333 27
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 58 RGVDSHLKAYERAQQMLKDLES-EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~-a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|++++|+..|++++++.|+++. +|.++|.++..+|++++|+..|+++++.+|....
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 8999999999999999999886 8999999999999999999999999999987755
No 103
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.22 E-value=5.5e-11 Score=92.78 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=77.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL--- 77 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~--- 77 (338)
..|++++|+.+|++++.++|++...+ ++|.+|..+|+++ +|+.+|++++.+.|+.
T Consensus 16 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~---------------------~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYN---------------------KCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH---------------------HHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHH---------------------HHHHHHHHHHhhccccchh
Confidence 46899999999999999999999877 9999999999995 4555556678887766
Q ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 78 ----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 78 ----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
..+++++|.++..+|++++|+.+|++++++.|+
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 889999999999999999999999999999883
No 104
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.19 E-value=2.6e-11 Score=99.01 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=61.1
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 25 KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 25 ~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
.++ ++|.++.++|+| ++|+.+|++||+++|+++.+|+++|.+|..+|++++|+.+|++
T Consensus 9 ~a~~~lG~~~~~~~~~---------------------~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDF---------------------EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 345 999999999999 5566666779999999999999999999999999999999999
Q ss_pred HHccCCCCcc
Q 019586 104 IWQPQPCKDH 113 (338)
Q Consensus 104 ALkl~P~~~~ 113 (338)
+++++|.+..
T Consensus 68 al~~~~~~~~ 77 (127)
T 4gcn_A 68 AVEVGRETRA 77 (127)
T ss_dssp HHHHHHHTTC
T ss_pred HHHhCcccch
Confidence 9999998765
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=1.9e-10 Score=101.84 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=98.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH---H-HHHHHHHHH------------------cCCHHHHHHHHHhhCcCCcCC---
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK---M-CNLGICLMK------------------QGRIGEAKETLRRVKPAVADG--- 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~---a-~nLG~~y~~------------------~G~~dEAi~~~~k~~p~~~d~--- 56 (338)
+.|+|++|+..|+++++.+|++.. + +.+|.+|.. +|++++|+..|+++...+|+.
T Consensus 53 ~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 53 KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 468999999999999999999864 3 489999876 679999999999955444431
Q ss_pred ---------------------------CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 57 ---------------------------PRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 57 ---------------------------lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|++++|+..|+++++..|+.+ .+++.+|.+|..+|++++|+.++++++.
T Consensus 133 ~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 133 TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 5799999999999999999987 7799999999999999999999999999
Q ss_pred cCCCCcc
Q 019586 107 PQPCKDH 113 (338)
Q Consensus 107 l~P~~~~ 113 (338)
..|.+.+
T Consensus 213 ~~~~~~~ 219 (225)
T 2yhc_A 213 NSSNTLE 219 (225)
T ss_dssp CCSCCCC
T ss_pred hCCCchh
Confidence 9998766
No 106
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.19 E-value=1.3e-10 Score=104.44 Aligned_cols=135 Identities=14% Similarity=0.193 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhhCc-CCcC----------C----CCCHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRVKP-AVAD----------G----PRGVD 61 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~~p-~~~d----------~----lg~~d 61 (338)
..|++++|+.+|+++++ |++..++ ++|.+|.. .+++++|+.+|+++.. .++. . .++++
T Consensus 18 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp HTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred hCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHH
Confidence 36899999999999998 6777766 99999999 9999999999999332 2322 2 78999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCCCCcc-cccchhhh----cCccHHHHHhh
Q 019586 62 SHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPCKDH-ILPTTNAI----KTRDDFADENI 132 (338)
Q Consensus 62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P~~~~-~l~~l~~~----~~~~~~A~e~~ 132 (338)
+|+.+|+++++. +++.+++++|.+|.. .|++++|+.+|+++++..+.... .++.+... .+..+.|...+
T Consensus 96 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 173 (273)
T 1ouv_A 96 KALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASY 173 (273)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999999997 489999999999999 99999999999999998743222 22222233 56677777777
Q ss_pred hhcccCCC
Q 019586 133 DSNVDVNP 140 (338)
Q Consensus 133 ~~al~~~P 140 (338)
..++..++
T Consensus 174 ~~a~~~~~ 181 (273)
T 1ouv_A 174 DKACDLKD 181 (273)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 77665543
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=1.6e-10 Score=99.30 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF 95 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~ 95 (338)
.+++|.++...|+|++|+..|+++.+..+. ..|++++|+.+|+++++++|+++.+|+++|.+|..+|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 449999999999999999999997544433 2899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCcc-------------------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 96 DAFLGSSSIWQPQPCKDH-------------------ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 96 eAi~~yekALkl~P~~~~-------------------~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+|+.+|++++++.|.+.. .++.+....++.+.|.+.+..++..+|.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999998772 1122234556666666666666666664
No 108
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=2.3e-11 Score=108.87 Aligned_cols=137 Identities=15% Similarity=0.059 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHHh--------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC--------cCCcC---------
Q 019586 2 QQNNYIEAEDAYRRALSI--------APDNNKMC-NLGICLMKQGRIGEAKETLRRVK--------PAVAD--------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel--------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~--------p~~~d--------- 55 (338)
..|++++|+.+|++++++ .|.....+ ++|.+|...|++++|+.+|+++. +..+.
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 468999999999999996 34444445 99999999999999999999833 22222
Q ss_pred ----CCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc--------CCCCcc--
Q 019586 56 ----GPRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP--------QPCKDH-- 113 (338)
Q Consensus 56 ----~lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl--------~P~~~~-- 113 (338)
..|++++|+.+|++++++. |....++.++|.++...|++++|+.+|++++++ .|....
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3889999999999999984 556688999999999999999999999999988 443332
Q ss_pred -cccchhhhcCccHHHHHhhhhcccC
Q 019586 114 -ILPTTNAIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 114 -~l~~l~~~~~~~~~A~e~~~~al~~ 138 (338)
.++.+....++.+.|...+..++..
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2233356677777887777776653
No 109
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=1.1e-10 Score=110.48 Aligned_cols=137 Identities=14% Similarity=0.109 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCC---HHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------
Q 019586 2 QQNNYIEAEDAYRRALSI---APDN---NKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD---------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel---dPd~---a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d---------------- 55 (338)
..|+|++|+.+|++|+.+ .++. +.++ ++|.+|..+|++++|+.+|+++. +...+
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 468999999999999998 3333 3344 99999999999999999999932 22221
Q ss_pred -CCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHcc-----C-CCCcc---cccchh
Q 019586 56 -GPRGVDSHLKAYERAQQMLKDLE------SEMMNKGGDRVEQSRLFDAFLGSSSIWQP-----Q-PCKDH---ILPTTN 119 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~l~Pd~~------~a~~nLG~~l~~lGr~~eAi~~yekALkl-----~-P~~~~---~l~~l~ 119 (338)
.+|++++|+.+|++|+++.+... .+++++|.+|..+|++++|+.+|++++++ + |..+. .++.+.
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 27899999999999999865433 58999999999999999999999999994 4 44333 233335
Q ss_pred hhcCccHHHHHhhhhcccC
Q 019586 120 AIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 120 ~~~~~~~~A~e~~~~al~~ 138 (338)
...++.+.|.+.+..++..
T Consensus 275 ~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6778888888888877765
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.15 E-value=9.9e-11 Score=102.74 Aligned_cols=90 Identities=16% Similarity=0.052 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh---hCcCCcC--------------------------CCCCHHHHHHHHHHHHHhCCC
Q 019586 26 MCNLGICLMKQGRIGEAKETLRR---VKPAVAD--------------------------GPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d--------------------------~lg~~deAi~~yekAL~l~Pd 76 (338)
.+..|.++...|++++|+..|++ +.|.+++ ..|++++|+.+|+++++++|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 44899999999999999999999 3444322 278999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
++.+|+++|.+|..+|++++|+.+|+++++++|+++..+
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 125 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999999999998744
No 111
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=3.8e-11 Score=116.35 Aligned_cols=93 Identities=14% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHHH----------------hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALS----------------IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALe----------------ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi 64 (338)
+.|+|++|+.+|++|++ ++|.+...| ++|.+|..+|+| ++|+
T Consensus 235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---------------------~~A~ 293 (370)
T 1ihg_A 235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW---------------------QGAV 293 (370)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH---------------------HHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH---------------------HHHH
Confidence 46899999999999999 667666766 999999999999 5566
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
.+|++|++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+..++
T Consensus 294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~ 344 (370)
T 1ihg_A 294 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 344 (370)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 667779999999999999999999999999999999999999999987643
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.14 E-value=3.4e-11 Score=111.93 Aligned_cols=141 Identities=14% Similarity=0.119 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC-----cC-------------C
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN------NKMC-NLGICLMKQGRIGEAKETLRRVKPAV-----AD-------------G 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~-----~d-------------~ 56 (338)
..|+|++|+.+|.+|+++.+.. ...+ ++|.+|..+|++++|+.+|+++...+ +. .
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999986533 2244 99999999999999999999832211 10 1
Q ss_pred CCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---------cccchhhh
Q 019586 57 PRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---------ILPTTNAI 121 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---------~l~~l~~~ 121 (338)
.|++++|+.+|++|+++.|.. ..++.++|.+|..+|++++|+.+|++++++.|.+.. .++.+...
T Consensus 128 ~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 128 PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 389999999999999998754 578999999999999999999999999999876543 11112345
Q ss_pred cCccHHHHHhhhhcccCCChhh
Q 019586 122 KTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 122 ~~~~~~A~e~~~~al~~~P~~~ 143 (338)
.++...|...+..++ .+|...
T Consensus 208 ~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 208 RADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp TTCHHHHHHHHHHHT-TSTTST
T ss_pred cCCHHHHHHHHHHHh-CCCCCC
Confidence 577888888888888 888643
No 113
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.12 E-value=1.4e-11 Score=117.03 Aligned_cols=119 Identities=11% Similarity=0.145 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC-----
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL----- 77 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~----- 77 (338)
+++++|+.+|++++..+|+++..+ ++|.+|..+|+|++| +.+|++|+++.|++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A---------------------~~~y~~Al~~~p~~~~~~~ 185 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQA---------------------LLQYKKIVSWLEYESSFSN 185 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHH---------------------HHHHHHHHHHTTTCCCCCS
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHH---------------------HHHHHHHHHHhhccccCCh
Confidence 456778889999999999888877 999999999999555 55555577777776
Q ss_pred ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhh
Q 019586 78 ----------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 78 ----------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
..+|+++|.+|..+|++++|+.+|+++++++|.+...+ +.+....++.+.|...+..++.++|...
T Consensus 186 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 186 EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 79999999999999999999999999999999988733 3335677788888888888777777644
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2.2e-10 Score=91.33 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=78.7
Q ss_pred HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 24 NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 24 a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
+..+ ++|.++...|+| ++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+
T Consensus 4 a~~~~~~g~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 62 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDW---------------------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62 (126)
T ss_dssp HHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4444 899999999999 556666677999999999999999999999999999999999
Q ss_pred HHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCC
Q 019586 103 SIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVN 139 (338)
Q Consensus 103 kALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~ 139 (338)
++++++|.++..+ +.+....++.+.|...+..++..+
T Consensus 63 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999987733 333556777777777777776655
No 115
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.9e-10 Score=100.88 Aligned_cols=109 Identities=23% Similarity=0.188 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-----CC---CHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--------CCcC---------
Q 019586 2 QQNNYIEAEDAYRRALSIA-----PD---NNKMC-NLGICLMKQGRIGEAKETLRRVKP--------AVAD--------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld-----Pd---~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--------~~~d--------- 55 (338)
..|++++|+.+|++++++. ++ ....+ ++|.+|..+|++++|+.+|+++.. .++.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4689999999999999984 33 33344 999999999999999999999332 2332
Q ss_pred ----CCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 56 ----GPRGVDSHLKAYERAQQM--------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 56 ----~lg~~deAi~~yekAL~l--------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
..|++++|+.+|++++++ .|....++.++|.++..+|++++|+.+|++++++.+.
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 389999999999999999 7777889999999999999999999999999987543
No 116
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.06 E-value=6.9e-10 Score=99.60 Aligned_cols=135 Identities=11% Similarity=0.040 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhhCc-CCcC----------C----CCCHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRVKP-AVAD----------G----PRGVDS 62 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~~p-~~~d----------~----lg~~de 62 (338)
.+++++|+.+|++|++++ +..++ ++|.+|.. .+++++|+.+|+++.. .++. . .+++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHH
Confidence 689999999999999986 66655 99999999 9999999999999332 2322 2 789999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCCCCcc-cccchhhh----cCccHHHHHhhh
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPCKDH-ILPTTNAI----KTRDDFADENID 133 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P~~~~-~l~~l~~~----~~~~~~A~e~~~ 133 (338)
|+.+|++++++. .+.+++++|.+|.. .+++++|+.+|+++++..+.... .++.+... .+..+.|.+.+.
T Consensus 133 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 999999999875 68899999999998 99999999999999988543222 23333344 677788888888
Q ss_pred hcccCCCh
Q 019586 134 SNVDVNPI 141 (338)
Q Consensus 134 ~al~~~P~ 141 (338)
.++..+|.
T Consensus 211 ~a~~~~~~ 218 (273)
T 1ouv_A 211 KACELENG 218 (273)
T ss_dssp HHHHTTCH
T ss_pred HHHhCCCH
Confidence 88877764
No 117
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=9.5e-11 Score=104.84 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHhC--------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--------CCcC---------
Q 019586 2 QQNNYIEAEDAYRRALSIA--------PDNNKMC-NLGICLMKQGRIGEAKETLRRVKP--------AVAD--------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld--------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--------~~~d--------- 55 (338)
..|++++|+.+|++++.+. |.....+ ++|.+|..+|++++|+.+|+++.. ..+.
T Consensus 81 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4689999999999999983 3333444 999999999999999999999332 2222
Q ss_pred ----CCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 56 ----GPRGVDSHLKAYERAQQM--------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 56 ----~lg~~deAi~~yekAL~l--------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
..|++++|+.+|++++++ .|....+++.+|.+|..+|++++|+.+|++++++.|
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 389999999999999999 777788999999999999999999999999998644
No 118
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=7.8e-11 Score=90.67 Aligned_cols=51 Identities=8% Similarity=-0.016 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|.+
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 21 REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 334444444666666666666666666666666666666666666666665
No 119
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=2.7e-10 Score=107.95 Aligned_cols=137 Identities=15% Similarity=0.060 Sum_probs=102.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC---C---CHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------
Q 019586 2 QQNNYIEAEDAYRRALSIAP---D---NNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVAD---------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldP---d---~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d---------------- 55 (338)
..|+|++|+.+|++|+.+.+ + .+..+ ++|.+|..+|++++|+.+++++.. ...+
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 36889999999999998742 2 22234 999999999999999999988322 1111
Q ss_pred -CCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-----cCCCCcc---cccchhh
Q 019586 56 -GPRGVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQ-----PQPCKDH---ILPTTNA 120 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALk-----l~P~~~~---~l~~l~~ 120 (338)
.+|++++|+.+|++|+++.+. ...+++++|.+|..+|++++|+.+|+++++ .+|.... .++.+..
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 278999999999999987431 346788999999999999999999999998 5665533 2333356
Q ss_pred hcCccHHHHHhhhhcccC
Q 019586 121 IKTRDDFADENIDSNVDV 138 (338)
Q Consensus 121 ~~~~~~~A~e~~~~al~~ 138 (338)
..++.+.|.+.+..++..
T Consensus 273 ~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 778888888887777665
No 120
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.04 E-value=5.7e-10 Score=90.39 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.+.+|.++...|++ ++|+..|+++++++|+++.+|+.+|.++..+|++++|+.+|++++
T Consensus 20 ~~~~g~~~~~~g~~---------------------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 20 PMEEGLSMLKLANL---------------------AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH---------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55899999999998 566666777999999999999999999999999999999999999
Q ss_pred ccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 106 QPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 106 kl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+++|.+...+ +.+....++.+.|...+...+..+|.
T Consensus 79 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999988733 33355667777788888887777765
No 121
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.04 E-value=1.8e-10 Score=108.42 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcC------CcC-------------CC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRRVKPA------VAD-------------GP 57 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~------~~d-------------~l 57 (338)
..|+|++|+.+|+++++++|++.. ++ ++|.+|..+|++++|+.+|+++... .+. ..
T Consensus 60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 468999999999999999999874 34 9999999999999999999983321 111 28
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHccCCCCcc-
Q 019586 58 RGVDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSR-----------------LFDAFLGSSSIWQPQPCKDH- 113 (338)
Q Consensus 58 g~~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr-----------------~~eAi~~yekALkl~P~~~~- 113 (338)
|++++|+.+|++++++ .|....++.++|.+|..+|+ +++|+.+|++++++.+....
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999 66677899999999999999 99999999999887543221
Q ss_pred --------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 114 --------ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 114 --------~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
.++.+....++.+.|...+..++...|.
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2223355677777777777777665543
No 122
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.03 E-value=5.4e-11 Score=117.88 Aligned_cols=118 Identities=12% Similarity=0.128 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC-----
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL----- 77 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~----- 77 (338)
++|++|+..|++++..+|+.+..+ ++|.+|..+|+|++|+ .+|++|++++|++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~---------------------~~y~~Al~~~p~~~~~~~ 306 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAV---------------------IQYGKIVSWLEMEYGLSE 306 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHH---------------------HHHHHHHHHHTTCCSCCH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHH---------------------HHHHHHHHHhcccccCCh
Confidence 456778888999999999888877 9999999999995554 4555577777776
Q ss_pred ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCCChh
Q 019586 78 ----------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 78 ----------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~P~~ 142 (338)
..+|+++|.+|..+|+|++|+.+|+++++++|.+...+. .+....++.+.|...+..++.++|..
T Consensus 307 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 307 KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 799999999999999999999999999999999877433 33566777777888887777766653
No 123
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.02 E-value=7.6e-10 Score=84.06 Aligned_cols=101 Identities=11% Similarity=0.006 Sum_probs=83.8
Q ss_pred CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 019586 20 APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF 98 (338)
Q Consensus 20 dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi 98 (338)
+|++...+ ++|.++...|++ ++|+.+|++++++.|+...+|+++|.++..+|++++|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 60 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNY---------------------TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCH---------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHH
Confidence 57777766 999999999999 55666667799999999999999999999999999999
Q ss_pred HHHHHHHccCCC--Cccc---ccchhhhc-CccHHHHHhhhhcccCCCh
Q 019586 99 LGSSSIWQPQPC--KDHI---LPTTNAIK-TRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 99 ~~yekALkl~P~--~~~~---l~~l~~~~-~~~~~A~e~~~~al~~~P~ 141 (338)
.+|+++++++|. +... ++.+.... ++.+.+.+.+...+...|.
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 999999999999 7653 23335577 7888888888887776664
No 124
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.02 E-value=7.5e-10 Score=92.60 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=79.9
Q ss_pred CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 019586 22 DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG 100 (338)
Q Consensus 22 d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~ 100 (338)
..+..+ .+|.+|...|+| ++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 67 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEY---------------------SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED 67 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHH
Confidence 344444 999999999999 5566666779999999999999999999999999999999
Q ss_pred HHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 101 SSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 101 yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
|+++++++|.+...+ +.+....++.+.|...+..++.++|.
T Consensus 68 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 68 AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999999999987733 33355667777777777766655554
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.02 E-value=7e-10 Score=101.79 Aligned_cols=135 Identities=9% Similarity=-0.017 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP---AVAD---------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d---------------- 55 (338)
..|+|++|+.+|+++++..+.... ++ .+|.++...|++++|+.+|+++.. ...+
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 356777777777777777665433 55 777777777777777777777322 1111
Q ss_pred CCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---------cccchh
Q 019586 56 GPRGVDSHLKAYERAQQML-------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---------ILPTTN 119 (338)
Q Consensus 56 ~lg~~deAi~~yekAL~l~-------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---------~l~~l~ 119 (338)
.+|++++|+.+|++|+++. +....+++++|.+|..+|++++|+.+|++++++.+.... .++.+.
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 1567777777777777421 223356777777777777777777777777777654422 122223
Q ss_pred hhcCcc-HHHHHhhhhcc
Q 019586 120 AIKTRD-DFADENIDSNV 136 (338)
Q Consensus 120 ~~~~~~-~~A~e~~~~al 136 (338)
...++. +.|.+.+..++
T Consensus 247 ~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTCCHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHH
Confidence 455533 56666666554
No 126
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.00 E-value=2.5e-10 Score=105.95 Aligned_cols=139 Identities=12% Similarity=0.037 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcC------CcC-------------CC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRRVKPA------VAD-------------GP 57 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~------~~d-------------~l 57 (338)
..|++++|+.+|++++++.|++.. .+ .+|.+|...|++++|+.+|+++... .+. ..
T Consensus 21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999854 34 9999999999999999999983221 111 27
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHccCCCC
Q 019586 58 RGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSR--------------------LFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr--------------------~~eAi~~yekALkl~P~~ 111 (338)
|++++|+.+|++++++.|.. ..++.++|.+|...|+ +++|+.+|++++++.+..
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999987653 4588999999999999 999999999988874332
Q ss_pred cc---------cccchhhhcCccHHHHHhhhhcccCCC
Q 019586 112 DH---------ILPTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 112 ~~---------~l~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
.. .++.+....++.+.|...+..++...|
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 21 222234566777777777776665443
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=1.6e-09 Score=99.30 Aligned_cols=136 Identities=10% Similarity=-0.003 Sum_probs=102.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCC------CHH-HHHHHHHHHHcCCHHHHHHHHHhhCc---CC--cC--------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPD------NNK-MCNLGICLMKQGRIGEAKETLRRVKP---AV--AD-------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd------~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p---~~--~d-------------- 55 (338)
..|+|++|+..|.++++..+. ... .+.+|.++..+|++++|+.+|+++.. .. ..
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 468999999999999998764 344 45899999999999999999998432 11 11
Q ss_pred CCCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---------cccchh
Q 019586 56 GPRGVDSHLKAYERAQ---QMLKDLE----SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---------ILPTTN 119 (338)
Q Consensus 56 ~lg~~deAi~~yekAL---~l~Pd~~----~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---------~l~~l~ 119 (338)
..|++++|+.+|++|+ +..|+.. .+++++|.+|..+|++++|+.+|++++++.+.... .++.+.
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2789999999999999 4556643 68899999999999999999999999988654221 122234
Q ss_pred hhcCccHHH-HHhhhhccc
Q 019586 120 AIKTRDDFA-DENIDSNVD 137 (338)
Q Consensus 120 ~~~~~~~~A-~e~~~~al~ 137 (338)
...++.+.| ...+..++.
T Consensus 247 ~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 247 RKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHH
Confidence 567777777 665666553
No 128
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.99 E-value=1.4e-09 Score=86.95 Aligned_cols=103 Identities=11% Similarity=-0.024 Sum_probs=83.4
Q ss_pred HhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Q 019586 18 SIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD 96 (338)
Q Consensus 18 eldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~e 96 (338)
..+|..+..+ ++|.++...|+| ++|+.+|+++++++|+++.+|+++|.++..+|++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~---------------------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 61 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKY---------------------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQ 61 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcH---------------------HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHH
Confidence 3567777766 999999999999 556666677999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 97 AFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 97 Ai~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
|+.+|+++++++|.++.. ++.+....++.+.|...+..++..+|.
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999998763 333355677777788777777765554
No 129
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.99 E-value=7.7e-10 Score=86.35 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=64.0
Q ss_pred hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 019586 19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 97 (338)
Q Consensus 19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eA 97 (338)
.+|++..++ ++|.+|..+|++ ++|+.+|+++++++|+++.+|+++|.+|..+|++++|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 60 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNA---------------------SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 478899876 999999999999 5566666779999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCcc
Q 019586 98 FLGSSSIWQPQPCKDH 113 (338)
Q Consensus 98 i~~yekALkl~P~~~~ 113 (338)
+.+|++++++.|....
T Consensus 61 ~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 61 IDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhhhcCCc
Confidence 9999999999876544
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.8e-09 Score=83.68 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 019586 27 CNLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR 93 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr 93 (338)
+++|.++...|++++|+..|+++ .|.... ..|++++|+.+|++++++.|+...+++.+|.++...|+
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 38999999999999999999994 343332 26899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 94 LFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 94 ~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
+++|+.+|+++++..|.+...+ +.+....++.+.+...+...+..+|
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 9999999999999999876522 2223455555556555555544443
No 131
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.97 E-value=1.8e-10 Score=99.32 Aligned_cols=119 Identities=17% Similarity=0.049 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH---
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE--- 78 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~--- 78 (338)
.|+|++|.+.|.......+.....+ ++|.++...|+|++| +.+|++++++.|+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A---------------------~~~~~~al~~~~~~~~~~ 75 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEA---------------------IVKYKEALDFFIHTEEWD 75 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHH---------------------HHHHHHHHHTTTTCTTCC
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHH---------------------HHHHHHHHHHHhcccccc
Confidence 3455556666655555444455544 899999999999555 555555777766665
Q ss_pred -------------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586 79 -------------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 79 -------------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~ 142 (338)
.+|+++|.+|..+|++++|+.+|+++++++|.+...+ +.+....++.+.|...+..++.++|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 8999999999999999999999999999999987633 233456666677777777666655543
No 132
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.96 E-value=7.9e-10 Score=88.46 Aligned_cols=109 Identities=14% Similarity=0.059 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH--H----HH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN--K----MC-NLGICLMKQGRIGEAKETLRRVKP---AVAD---------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a--~----a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d---------------- 55 (338)
..|++++|+.+|++++++.+... . .+ ++|.+|..+|++++|+.+|+++.. ...+
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 36899999999999999865322 1 33 999999999999999999999322 2211
Q ss_pred CCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 56 GPRGVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 56 ~lg~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
..|++++|+.+|++++++.+. ...++.++|.++..+|++++|+.+|++++++...
T Consensus 101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 278999999999999987432 2467889999999999999999999999877543
No 133
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.95 E-value=1.9e-10 Score=108.28 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHh------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC------CcC-------------C
Q 019586 3 QNNYIEAEDAYRRALSI------APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA------VAD-------------G 56 (338)
Q Consensus 3 ~g~~eeAi~~y~kALel------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~------~~d-------------~ 56 (338)
.|++++|+.+|++++++ .|.....+ ++|.+|..+|++++|+.+|+++... .+. .
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 45666666666666666 66666654 6666666666666666666662211 000 1
Q ss_pred CCC-----------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRG-----------------VDSHLKAYERAQQML------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~-----------------~deAi~~yekAL~l~------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.|+ +++|+.+|++++++. +....++.++|.+|..+|++++|+.+|++++++.|....
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 445 666666666666553 223345666666666666666666666666666554322
Q ss_pred ---------cccchhhhcCccHHHHHhhhhcccCCC
Q 019586 114 ---------ILPTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 114 ---------~l~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
.++.+....++.+.|...+..++...|
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 112223445555555555555444333
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=9.1e-10 Score=102.23 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC--H----HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc---C----------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN--N----KMC-NLGICLMKQGRIGEAKETLRRVKPAVA---D---------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~--a----~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~---d---------------- 55 (338)
.+|++++|+.+|++|+++.+.. . ..+ ++|.+|.. |++++|+.+|+++...++ .
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 3689999999999999985432 2 234 99999998 999999999999432211 1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 56 GPRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 56 ~lg~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+|++++|+.+|++++++.|+. ..+++++|.++..+|++++|+.+|++++ ++|....
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 2899999999999999987654 3578899999999999999999999999 9998654
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.94 E-value=8e-09 Score=94.67 Aligned_cols=111 Identities=9% Similarity=-0.054 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------CCCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVK---PAVAD----------------GPRGVDSHLKAYERAQQMLKDL------ESEMM 82 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------------~lg~~deAi~~yekAL~l~Pd~------~~a~~ 82 (338)
+.+..+...|+|++|+..|.++. +.... ..|++++|+.+|++|+++.+.. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 66667777777777777766522 11110 2457777777777777654332 45666
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH---ccCCCCcc-------cccchhhhcCccHHHHHhhhhcccC
Q 019586 83 NKGGDRVEQSRLFDAFLGSSSIW---QPQPCKDH-------ILPTTNAIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 83 nLG~~l~~lGr~~eAi~~yekAL---kl~P~~~~-------~l~~l~~~~~~~~~A~e~~~~al~~ 138 (338)
++|.+|..+|++++|+.+|++++ +..|.+.. .++.+....++.+.|.+.+..++..
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777777777776 33443321 1222245566666666666655544
No 136
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.94 E-value=3.5e-10 Score=101.06 Aligned_cols=136 Identities=12% Similarity=0.034 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcC------CcC-------------CC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRRVKPA------VAD-------------GP 57 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~------~~d-------------~l 57 (338)
..|++++|+.+|+++++++|++.. .+ .+|.+|...|++++|+.+|+++... .+. ..
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999854 34 9999999999999999999983221 111 28
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHccCCCC
Q 019586 58 RGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSR--------------------LFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr--------------------~~eAi~~yekALkl~P~~ 111 (338)
|++++|+..|++++++.+.. ..++.++|.++..+|+ +++|+.+|++++.+.+..
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~ 176 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999987654 3488999999999999 999999999988764322
Q ss_pred cc---------cccchhhhcCccHHHHHhhhhccc
Q 019586 112 DH---------ILPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 112 ~~---------~l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
.. .++.+....++.+.+...+..++.
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 112223455566666666655554
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.94 E-value=1.1e-09 Score=95.65 Aligned_cols=96 Identities=8% Similarity=-0.061 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHCCCH
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-------LES-----EMMNKGGDRVEQSRL 94 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd-------~~~-----a~~nLG~~l~~lGr~ 94 (338)
.++|.++...|+| ++|+.+|++||+++|+ +.. +|+|+|.++..+|+|
T Consensus 15 ~~~G~~l~~~g~~---------------------eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~ 73 (159)
T 2hr2_A 15 LSDAQRQLVAGEY---------------------DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF 73 (159)
T ss_dssp HHHHHHHHHHTCH---------------------HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCH---------------------HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH
Confidence 3999999999999 4555556668888887 443 999999999999999
Q ss_pred HHHHHHHHHHHcc-------CCCCcccc----cc---hhhhcCccHHHHHhhhhcccCCChhh
Q 019586 95 FDAFLGSSSIWQP-------QPCKDHIL----PT---TNAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 95 ~eAi~~yekALkl-------~P~~~~~l----~~---l~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
++|+.+|+++|++ +|+++..+ .. .....++.+.|...+..++.++|...
T Consensus 74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999 99987755 33 35678888889999999888887643
No 138
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.93 E-value=4.4e-09 Score=104.37 Aligned_cols=110 Identities=8% Similarity=0.055 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH-HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNN-KMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLKA 66 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a-~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~~ 66 (338)
.|++++|+..|+++++++|.+. ..| ++|.++..+|++++|+..|+++....+. ..|++++|..+
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 4556666666666666666553 233 6666666666666666666663222111 14566666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
|+++++..|+++.+|..+|.++...|++++|..+|++++...|.++
T Consensus 414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 6666666666666666666666666666666666666666555443
No 139
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.93 E-value=2.2e-09 Score=101.47 Aligned_cols=109 Identities=10% Similarity=0.022 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH-------HHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC---------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN-------KMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD--------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a-------~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d--------------- 55 (338)
..|++++|+.+|++|+++.+... ..+ ++|.+|..+|++++|+.+|+++. +...+
T Consensus 155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 46899999999999999855432 233 99999999999999999999943 22221
Q ss_pred -CCCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 56 -GPRGVDSHLKAYERAQQ-----ML-KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~-----l~-Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
.+|++++|+.+|++|++ .+ |..+.+++++|.+|..+|++++|+.+|++++++.+.
T Consensus 235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 28999999999999999 45 788899999999999999999999999999998654
No 140
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.92 E-value=1.4e-09 Score=83.02 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 64 LKAYERAQQMLKDLES-EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~-a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+..|+++++++|+++. +|+++|.+|..+|++++|+.+|+++++++|++..
T Consensus 20 ~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 20 LQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 3333335555555555 5555555555555555555555555555555444
No 141
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=9e-10 Score=101.81 Aligned_cols=105 Identities=10% Similarity=-0.138 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y 67 (338)
+.|++++|+.+|++++..+|+....+ +.+..+..+++.++|+..|++ ..|++++ ..|++++|+..|
T Consensus 163 ~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 163 ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 47999999999999999999655544 888889999999999999999 4566555 389999999999
Q ss_pred HHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 68 ERAQQMLKDL--ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 68 ekAL~l~Pd~--~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
+++++.+|++ ..++.++|.++..+|+.++|..+|++++.
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999 89999999999999999999999999875
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=3.4e-09 Score=97.20 Aligned_cols=104 Identities=6% Similarity=-0.013 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc------CCcC-------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP------AVAD------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p------~~~d------------- 55 (338)
..|++++|+.+|++|+.+.+...+ .+ ++|.+|..+|++++|+.+|+++.. .+..
T Consensus 127 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 356788888888888886443222 23 888888888888888888888431 1111
Q ss_pred -CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Q 019586 56 -GPRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSR-LFDAFLGSSSIW 105 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr-~~eAi~~yekAL 105 (338)
.+|++++|+.+|++|+++.+.. +.+|+++|.+|..+|+ +++|+.+|++|+
T Consensus 207 ~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2778888888888888876443 6778888888888884 588888888874
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.89 E-value=6.5e-09 Score=106.55 Aligned_cols=164 Identities=11% Similarity=-0.031 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC----------HHHHHHHHHhh---CcCCcC----------CCC--C
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR----------IGEAKETLRRV---KPAVAD----------GPR--G 59 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~----------~dEAi~~~~k~---~p~~~d----------~lg--~ 59 (338)
.++|+.+|.++|+++|++..+| ++|.++...|+ +++|+..+.++ .|.+.. .++ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 4789999999999999999988 99999999999 99999999994 444433 266 7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCcccccchhhhcCccHHHHHhhhhcccC
Q 019586 60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS-RLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG-r~~eAi~~yekALkl~P~~~~~l~~l~~~~~~~~~A~e~~~~al~~ 138 (338)
+++|+.+++++++++|.+..+|+++|.++...| .+++|++++.++++.+|.+...+.... +....+......
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~-------~ll~~l~~~~~~ 197 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS-------CLLPQLHPQPDS 197 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH-------HHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHH-------HHHHhhcccccc
Confidence 799999999999999999999999999999999 899999999999999999876322110 000000000000
Q ss_pred CCh-hhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhh
Q 019586 139 NPI-VLSKHRSVKKLFPTANAIKTQENFADENINANIVV 176 (338)
Q Consensus 139 ~P~-~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
.+. .......-..+..+.+||...|+...++++++.+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 000 00001111223344567888888888888888866
No 144
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.89 E-value=1.3e-08 Score=75.45 Aligned_cols=70 Identities=30% Similarity=0.485 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|++++|+.+|+++++++|++...+ ++|.+|..+|++ ++|+.+|+++++++|+++.+
T Consensus 21 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~---------------------~~A~~~~~~a~~~~p~~~~~ 79 (91)
T 1na3_A 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY---------------------DEAIEYYQKALELDPNNAEA 79 (91)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHhcCCCCHHH
Confidence 46889999999999999999888866 999999999888 56666677799999999999
Q ss_pred HHHHHHHHHHCC
Q 019586 81 MMNKGGDRVEQS 92 (338)
Q Consensus 81 ~~nLG~~l~~lG 92 (338)
+.++|.++..+|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998765
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=3.2e-09 Score=89.75 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=83.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc------CCcC-------------CCCC
Q 019586 1 MQQNNYIEAEDAYRRALSIAP-DNNKMC-NLGICLMKQGRIGEAKETLRRVKP------AVAD-------------GPRG 59 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldP-d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p------~~~d-------------~lg~ 59 (338)
+..|+|++|+..++.... +| .....+ ++|.+|..+|++++|+.+|+++.. ..+. ..|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 357899999996555444 55 444455 999999999999999999999433 1111 2889
Q ss_pred HHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 60 VDSHLKAYERAQQM---LKD----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 60 ~deAi~~yekAL~l---~Pd----~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
+++|+.+|++++++ .++ ...+++++|.++..+|++++|+.+|++++++.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999998 443 346789999999999999999999999997744
No 146
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.88 E-value=4.5e-10 Score=104.26 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHHHHhC------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------
Q 019586 2 QQNNYIEAEDAYRRALSIA------PDNNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVAD---------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d---------------- 55 (338)
..|++++|+.+|++++.+. |.....+ ++|.+|..+|++++|+.+|+++.. ...+
T Consensus 59 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 4689999999999998873 2233344 999999999999999999988332 2111
Q ss_pred CCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 56 GPRG--------------------VDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 56 ~lg~--------------------~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
..|+ +++|+.+|++++++ .|....++.++|.++..+|++++|+.+|++++++.|
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 1567 89999999999887 344557889999999999999999999999998877
Q ss_pred CCcc---------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 110 CKDH---------ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 110 ~~~~---------~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
.... .++.+....++.+.|...+..++...|.
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6543 1222345677777777777776654443
No 147
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.87 E-value=1.4e-08 Score=100.84 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHH-HHHHHHHH-------cCCHH-------HHHHHHHhhCc-CCcC-------------CC
Q 019586 7 IEAEDAYRRALSIAPDNNKMC-NLGICLMK-------QGRIG-------EAKETLRRVKP-AVAD-------------GP 57 (338)
Q Consensus 7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~-------~G~~d-------EAi~~~~k~~p-~~~d-------------~l 57 (338)
.+|+..|++|+..+|+++.+| ++|.++.. +|+++ +|+..|+++.. ..|+ ..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999987 99999886 79987 99999999654 3444 27
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 58 RGVDSHLKAYERAQQMLKDLE-SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~-~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|++++|...|++++++.|.++ .+|.++|.++..+|++++|+..|+++++..|....
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 899999999999999999886 68999999999999999999999999998887544
No 148
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.87 E-value=4.5e-09 Score=87.61 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM------------------LKDLESEMMNKGGDRV 89 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l------------------~Pd~~~a~~nLG~~l~ 89 (338)
++|..+...|+|++|+..|.+ |+++ +|....+|+++|.+|.
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~---------------------al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 74 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRD---------------------ALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH---------------------HHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH---------------------HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999666666654 4444 6778899999999999
Q ss_pred HCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhh
Q 019586 90 EQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 90 ~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
.+|++++|+.+|+++++++|.++..+ +.+....++.+.|...+..++.++|...
T Consensus 75 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 75 NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999999999998733 3346678888888888888888777643
No 149
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=1.6e-08 Score=96.29 Aligned_cols=108 Identities=3% Similarity=-0.232 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC--CHHHHHHHHHh---hCcCCcCC--------------C---CCHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG--RIGEAKETLRR---VKPAVADG--------------P---RGVDS 62 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G--~~dEAi~~~~k---~~p~~~d~--------------l---g~~de 62 (338)
.++|+.++.++|.++|++..+| .+|.++..+| ++++++..+.+ .+|.+... . +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4799999999999999999988 9999999999 99999999999 45554431 3 78999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHccCCCCcc
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF--DAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~--eAi~~yekALkl~P~~~~ 113 (338)
++.+++++++++|.+..+|+.++.++...|+++ +++.++.++++.+|.+..
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999 999999999999999876
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=8.4e-09 Score=90.91 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh-hCcCCcCC---------CC----CHHHHHHHHHHHHH
Q 019586 8 EAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR-VKPAVADG---------PR----GVDSHLKAYERAQQ 72 (338)
Q Consensus 8 eAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k-~~p~~~d~---------lg----~~deAi~~yekAL~ 72 (338)
+|+.+|+++.+. .++.++ +||.+|...+++++|+.+|++ +...++.+ .+ ++++|+.+|++|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 345555555543 344433 555555555555555555555 22222210 12 45555555555533
Q ss_pred hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCC
Q 019586 73 MLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 73 l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P 109 (338)
+.++.++++||.+|.. .+++++|+.+|+++++..|
T Consensus 82 --~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 82 --AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp --TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred --CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 3455555555555554 5555555555555555554
No 151
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.5e-08 Score=77.59 Aligned_cols=77 Identities=10% Similarity=0.019 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Q 019586 27 CNLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDL------ESEMMNKGGD 87 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~------~~a~~nLG~~ 87 (338)
+++|.++...|+|++|+..|++ +.|.++. .+|++++|+.+|+++++++|++ ..+++++|.+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 3999999999999999999999 4455443 2889999999999999999998 8999999999
Q ss_pred HHHCCCHHHHHHHHHH
Q 019586 88 RVEQSRLFDAFLGSSS 103 (338)
Q Consensus 88 l~~lGr~~eAi~~yek 103 (338)
+..+|++++|+..|++
T Consensus 88 ~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 88 QGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHCCCCCSSSSSS
T ss_pred HHHHHhHhhhHhHHHH
Confidence 9999988877766554
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=2.1e-08 Score=81.76 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=74.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|++++|+.+|+++++++|++...+ ++|.+|..+|++ ++|+.+|++++++.|++..+
T Consensus 59 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~a~~~~p~~~~~ 117 (166)
T 1a17_A 59 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF---------------------RAALRDYETVVKVKPHDKDA 117 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence 46899999999999999999999977 999999999999 55666667799999999999
Q ss_pred HHHHH--HHHHHCCCHHHHHHHHHHHHccC
Q 019586 81 MMNKG--GDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 81 ~~nLG--~~l~~lGr~~eAi~~yekALkl~ 108 (338)
+..++ ..+...|++++|+.++.++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 118 KMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 85554 45889999999999999876654
No 153
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.83 E-value=4.9e-09 Score=99.21 Aligned_cols=111 Identities=8% Similarity=-0.006 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC---H----HHH-HHHHHHHHcCCHHHHHHHHHhhCcC---CcC---------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN---N----KMC-NLGICLMKQGRIGEAKETLRRVKPA---VAD--------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~---a----~a~-nLG~~y~~~G~~dEAi~~~~k~~p~---~~d--------------- 55 (338)
..|++++|+.+|++|+++.+.. . ..+ ++|.+|..+|++++|+.+|+++... ..+
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4689999999999999986532 2 133 9999999999999999999994321 111
Q ss_pred -CCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 56 -GPRGVDSHLKAYERAQQ-----MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~-----l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
.+|++++|+.+|++|++ .+|....+++++|.++..+|++++|+.+|++++++.+...
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 27899999999999999 7788899999999999999999999999999999977643
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=8.4e-09 Score=80.80 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=76.6
Q ss_pred CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586 21 PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 99 (338)
Q Consensus 21 Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~ 99 (338)
|.....+ ++|.++...|++ ++|+.+|++++++.|++..+++++|.++..+|++++|+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDY---------------------PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCS---------------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHH
Confidence 3444555 999999999999 556666667999999999999999999999999999999
Q ss_pred HHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 100 GSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 100 ~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
+|+++++++|.+...+ +.+....++.+.|...+...+..+|
T Consensus 72 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999887632 2234455666666666655554444
No 155
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.81 E-value=1.5e-09 Score=96.86 Aligned_cols=138 Identities=17% Similarity=0.122 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHHHHhC------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------
Q 019586 2 QQNNYIEAEDAYRRALSIA------PDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD---------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d---------------- 55 (338)
..|++++|+.+|++++.+. |.....+ ++|.+|..+|++++|+.+|+++. +...+
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 4689999999999998872 3333344 99999999999999999998832 22221
Q ss_pred CCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 56 GPRG--------------------VDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 56 ~lg~--------------------~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
..|+ +++|+..|++++.+ .+....++.++|.++..+|++++|+.+|++++++.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1557 89999999999887 344456889999999999999999999999998876
Q ss_pred CCcc---------cccchhhhcCccHHHHHhhhhcccCC
Q 019586 110 CKDH---------ILPTTNAIKTRDDFADENIDSNVDVN 139 (338)
Q Consensus 110 ~~~~---------~l~~l~~~~~~~~~A~e~~~~al~~~ 139 (338)
.... .++.+....++.+.+...+..++...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5332 11222445666666766666655433
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.80 E-value=3.8e-09 Score=88.77 Aligned_cols=111 Identities=13% Similarity=0.027 Sum_probs=87.3
Q ss_pred HHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCH--HH
Q 019586 33 LMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGD-RVEQSRL--FD 96 (338)
Q Consensus 33 y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~-l~~lGr~--~e 96 (338)
+...|++++|+..|+++ .|.++. ..|++++|+.+|+++++++|+++.+++++|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678899999999883 444443 27899999999999999999999999999999 8899998 99
Q ss_pred HHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCChhh
Q 019586 97 AFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 97 Ai~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
|+.+|+++++++|.+... ++.+....++.+.|...+..++..+|...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 999999999999988763 33345677888888888888888888753
No 157
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=1.9e-08 Score=85.21 Aligned_cols=104 Identities=6% Similarity=-0.140 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHH-HHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICL-MKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y-~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ 66 (338)
..|++++|+.+|++++.++| ++.++ .++.+. ...++..+|+..|++ ..|.++. ..|++++|+..
T Consensus 52 ~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 52 ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 47899999999999999999 77755 444342 333444568889988 4555554 38999999999
Q ss_pred HHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 67 YERAQQMLKDL--ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 67 yekAL~l~Pd~--~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
|+++++++|++ +.++.++|.++..+|++++|+.+|++++.
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999986 56999999999999999999999999874
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=3.8e-09 Score=89.31 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHhC------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC------cCCcC-------------
Q 019586 2 QQNNYIEAEDAYRRALSIA------PDNNKMC-NLGICLMKQGRIGEAKETLRRVK------PAVAD------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~------p~~~d------------- 55 (338)
..|++++|+.+|++++.+. +.....+ ++|.+|..+|++++|+.+|+++. ++.+.
T Consensus 38 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 38 FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 4689999999999999953 2223334 99999999999999999999932 22321
Q ss_pred -CCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 56 -GPRGVDSHLKAYERAQQMLKD--L----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~l~Pd--~----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
..|++++|+.+|++++++.+. . ..++.++|.++..+|++++|+.+|++++++...
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 278999999999999987432 2 245689999999999999999999999987544
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=3.3e-08 Score=75.31 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
+.+|.++...|++ ++|+..|++++.+.|+++.+++++|.++..+|++++|+.+|+++++
T Consensus 8 ~~~~~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 8 KEKGNKALSVGNI---------------------DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccH---------------------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3889999999998 5566666779999999999999999999999999999999999999
Q ss_pred cCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 107 PQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 107 l~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++|.+...+ +.+....++.+.+...+...+..+|.
T Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999887632 33355667777777777777766665
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=6.7e-09 Score=98.32 Aligned_cols=111 Identities=11% Similarity=-0.011 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCC-c---C-----------CCCCHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV-A---D-----------GPRGVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~-~---d-----------~lg~~deAi~~ 66 (338)
..|+|++|.+.|+.++..+|++...|.+|.++...++|++|+.+|+++.... + . .+|++++|+.+
T Consensus 114 ~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~ 193 (282)
T 4f3v_A 114 AQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR 193 (282)
T ss_dssp HHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3589999999999999999988756699999999999999999999843321 1 1 38999999999
Q ss_pred HHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 67 YERAQQML--KD-LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 67 yekAL~l~--Pd-~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|++++.-. |. .+++++++|.++..+|+.++|..+|++++..+|. +.
T Consensus 194 l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 99998654 55 6689999999999999999999999999999998 65
No 161
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=1.1e-08 Score=90.17 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC----CHHHHHHHHHh-hCcCCcC--------------CCCCHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG----RIGEAKETLRR-VKPAVAD--------------GPRGVDS 62 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G----~~dEAi~~~~k-~~p~~~d--------------~lg~~de 62 (338)
.+++++|+.+|++|++. .++.++ +||.+|.. + ++++|+.+|++ +.+.++. ..+++++
T Consensus 31 ~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~ 107 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAH 107 (212)
T ss_dssp HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHH
Confidence 47899999999999876 577766 99999998 7 99999999999 4444443 1679999
Q ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCCCCcc
Q 019586 63 HLKAYERAQQMLK--DLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 63 Ai~~yekAL~l~P--d~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+.+|++|++..+ +++.++++||.+|.. .+++++|+.+|++++++ |.++.
T Consensus 108 A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~ 163 (212)
T 3rjv_A 108 AITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGY 163 (212)
T ss_dssp HHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTH
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHH
Confidence 9999999999988 459999999999999 99999999999999988 65554
No 162
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.77 E-value=2.7e-08 Score=73.61 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=61.5
Q ss_pred HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 24 NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 24 a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
...+ ++|.++...|++ ++|+.+|++++++.|+.+.+|+++|.++..+|++++|+.+|+
T Consensus 9 ~~~~~~la~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDY---------------------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444 999999999999 556666677999999999999999999999999999999999
Q ss_pred HHHccCCCCcc
Q 019586 103 SIWQPQPCKDH 113 (338)
Q Consensus 103 kALkl~P~~~~ 113 (338)
++++++|.+..
T Consensus 68 ~a~~~~p~~~~ 78 (91)
T 1na3_A 68 KALELDPNNAE 78 (91)
T ss_dssp HHHHHCTTCHH
T ss_pred HHHhcCCCCHH
Confidence 99999998866
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=1.4e-08 Score=78.70 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=76.0
Q ss_pred CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586 21 PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 99 (338)
Q Consensus 21 Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~ 99 (338)
|.....+ .+|.++...|++ ++|+..|++++.+.|+.+.+++.+|.++...|++++|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 67 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENF---------------------EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHH
Confidence 3344444 999999999999 555666667999999999999999999999999999999
Q ss_pred HHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 100 GSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 100 ~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
+|+++++++|.+...+ +.+....++.+.|...+..++..+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 9999999999887632 2234455666666666655554444
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.3e-08 Score=79.97 Aligned_cols=102 Identities=17% Similarity=0.062 Sum_probs=81.6
Q ss_pred hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCH
Q 019586 19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRL 94 (338)
Q Consensus 19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~ 94 (338)
.+|.....+ .+|.++...|+| ++|+.+|++++++.|+. ..+|+++|.+|..+|++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~ 81 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDY---------------------GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY 81 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCH---------------------HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHHHhCCH---------------------HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH
Confidence 456677755 999999999999 55566666689999987 89999999999999999
Q ss_pred HHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 95 FDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 95 ~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++|+.+|+++++++|.+...+ +.+....++.+.|...+..++..+|.
T Consensus 82 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 82 DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999887632 33345667777777777777666665
No 165
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.76 E-value=5.7e-09 Score=90.97 Aligned_cols=108 Identities=14% Similarity=0.015 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHccCCCCcccccch---hhhc-
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL----------FDAFLGSSSIWQPQPCKDHILPTT---NAIK- 122 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~----------~eAi~~yekALkl~P~~~~~l~~l---~~~~- 122 (338)
.+++++|+..|+++++++|+++++|+++|.++..+|++ ++|+.+|+++|+++|++...+..+ ....
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 44679999999999999999999999999999999886 599999999999999998743333 3222
Q ss_pred ----------CccHHHHHhhhhcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhh
Q 019586 123 ----------TRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANI 174 (338)
Q Consensus 123 ----------~~~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~ 174 (338)
++.+.|...+..++.++|... .+.++++..++-.+.++++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~----------~y~~al~~~~ka~el~~~~~~ 146 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT----------HYLKSLEMTAKAPQLHAEAYK 146 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHTHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHhCHhccCcccc
Confidence 467778888999998888742 456677777777777776655
No 166
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=5e-08 Score=74.83 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=71.6
Q ss_pred hCCCC-HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Q 019586 19 IAPDN-NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD 96 (338)
Q Consensus 19 ldPd~-a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~e 96 (338)
++|.. ...+ .+|.++...|++ ++|+.+|+++++..|+...+++.+|.++...|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 61 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDY---------------------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHH
Confidence 35555 4444 999999999999 555666666899999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhccc
Q 019586 97 AFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 97 Ai~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~ 137 (338)
|+.+|++++++.|.+...+ +.+....++.+.+...+...+.
T Consensus 62 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999876532 2223344555555555544443
No 167
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=1.6e-08 Score=95.80 Aligned_cols=178 Identities=10% Similarity=-0.082 Sum_probs=124.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HH-------HHHHHHcCCHHHHHHHHHhhC---cCC-----c-C---------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NL-------GICLMKQGRIGEAKETLRRVK---PAV-----A-D--------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nL-------G~~y~~~G~~dEAi~~~~k~~---p~~-----~-d--------- 55 (338)
+.+++.+|+.+|.+++.++|+..++| ++ +.++...++..+++..+++.. |.. . .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 45789999999999999999999988 78 788888888888888887722 211 1 0
Q ss_pred ----------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC----cc-c
Q 019586 56 ----------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK----DH-I 114 (338)
Q Consensus 56 ----------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~----~~-~ 114 (338)
..|++++|...|+.++...|++. +++.+|.++++.|+|++|+.+|+.+++..+.. .. .
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 15688888888888887788777 77888888888888888888887776653211 11 4
Q ss_pred ccchhhhcCccHHHHHhhhhcccCC--Ch-----hhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhh
Q 019586 115 LPTTNAIKTRDDFADENIDSNVDVN--PI-----VLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQ 183 (338)
Q Consensus 115 l~~l~~~~~~~~~A~e~~~~al~~~--P~-----~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d 183 (338)
++.+....++.+.|...+..++.-. |. .+.+...+..+....+|...-.+......+ .-+. ..+.+
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~--~aL~~ 249 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA--AALKD 249 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH--HHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH--HHHhC
Confidence 4444667777777777777665322 32 234555666777777777777777776666 4433 34444
No 168
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.75 E-value=2.6e-08 Score=99.17 Aligned_cols=91 Identities=9% Similarity=-0.086 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHh-----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh
Q 019586 3 QNNYIEAEDAYRRALSI-----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM 73 (338)
Q Consensus 3 ~g~~eeAi~~y~kALel-----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l 73 (338)
.|+|++|+..|++++++ .|+++. .+ |||.+|..+|+|++|+.+|++ |+..+++.+--
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~--------------aL~i~~~~lG~ 376 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK--------------IIKPYSKHYPV 376 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHSCS
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH--------------HHHHHHHHcCC
Confidence 58999999999999996 577777 22 999999999999999999865 67777776432
Q ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 74 -LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 74 -~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.|+.+..++|||.+|..+|++++|+..|++|+++
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 2444577999999999999999999999999876
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.74 E-value=3.1e-08 Score=78.09 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
.+++|.++...|+| ++|+..|+++++..|+++ .+++.+|.++..+|++++|+.+|+
T Consensus 5 ~~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 63 (129)
T 2xev_A 5 AYNVAFDALKNGKY---------------------DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFR 63 (129)
T ss_dssp HHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCH---------------------HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34788889999888 556666667999999988 899999999999999999999999
Q ss_pred HHHccCCCCc---c---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 103 SIWQPQPCKD---H---ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 103 kALkl~P~~~---~---~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++++..|++. . .++.+....++.+.|...+...+...|.
T Consensus 64 ~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 64 DLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 9999999983 3 2233355677777777777777766665
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=2.5e-08 Score=91.92 Aligned_cols=101 Identities=10% Similarity=-0.055 Sum_probs=85.5
Q ss_pred CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586 21 PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 99 (338)
Q Consensus 21 Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~ 99 (338)
|..+..+ ++|.++...|+| ++|+..|+++++++|+++.+|+++|.+|..+|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 59 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKY---------------------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 59 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence 4566655 999999999999 556666677999999999999999999999999999999
Q ss_pred HHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586 100 GSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 100 ~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~ 142 (338)
+|+++++++|.+...+ +.+....++.+.|...+..++..+|..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999988733 334667888888998888888877753
No 171
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.72 E-value=2.5e-08 Score=75.87 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHh---hCcCCcC-C----------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019586 27 CNLGICLMKQGRIGEAKETLRR---VKPAVAD-G----------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 92 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d-~----------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG 92 (338)
+++|.++...|++++|+..|++ ..|.++. . +|++++|+.+|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 4789999999999999999999 4566655 2 789999999999999999999998865 6
Q ss_pred CHHHHHHHHHHHHccCCCCcc
Q 019586 93 RLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 93 r~~eAi~~yekALkl~P~~~~ 113 (338)
.+.+|+.+|++++..+|.+..
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 788899999999999888764
No 172
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.72 E-value=5.5e-08 Score=90.90 Aligned_cols=135 Identities=16% Similarity=0.043 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH-----HH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------C
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK-----MC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------------G 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~-----a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------------~ 56 (338)
..|++++|+.++++++...|.... .+ ++|.+|...|++++|+..++++. +...+ .
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 468999999999999999876532 22 99999999999999999999932 22211 2
Q ss_pred CCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--------cccchhh
Q 019586 57 PRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--------ILPTTNA 120 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--------~l~~l~~ 120 (338)
.|++++|+..|++++++. |....++.++|.++..+|++++|..+|++++.+.+.... .++.+..
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 899999999999999986 334577889999999999999999999999999886432 1112234
Q ss_pred hcCccHHHHHhhhhcc
Q 019586 121 IKTRDDFADENIDSNV 136 (338)
Q Consensus 121 ~~~~~~~A~e~~~~al 136 (338)
..++.+.|...+..++
T Consensus 186 ~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555655555443
No 173
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.71 E-value=2.5e-08 Score=102.16 Aligned_cols=108 Identities=9% Similarity=-0.052 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC--CHHHHHHHHHhhCcCCcC-------------CCC-CHHHHHHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG--RIGEAKETLRRVKPAVAD-------------GPR-GVDSHLKAYE 68 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G--~~dEAi~~~~k~~p~~~d-------------~lg-~~deAi~~ye 68 (338)
+++|+.+|.++++.+|++..+| ++++++...| +|++|++.+.++...++. .++ .+++++++++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 8999999999999999999988 9999999999 789999999994443333 256 8999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHccCCCCcc
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQ--------------SRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~l--------------Gr~~eAi~~yekALkl~P~~~~ 113 (338)
++|+.+|++..+|+++|.++..+ +++++|++++.+|+.++|++..
T Consensus 169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999885 6689999999999999999876
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.70 E-value=1e-08 Score=102.37 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
++|+|++|+.+|++|++++|++..++ ++|.+|..+|++ ++|+.+|++|++++|++..+
T Consensus 52 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~---------------------~eA~~~~~~al~~~p~~~~~ 110 (477)
T 1wao_1 52 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF---------------------RAALRDYETVVKVKPHDKDA 110 (477)
T ss_dssp HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHHHSTTCTTH
T ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence 47899999999999999999999977 999999999999 55666667799999999999
Q ss_pred HHHHHHH--HHHCCCHHHHHHHHH-----------HHHccCCCCcc
Q 019586 81 MMNKGGD--RVEQSRLFDAFLGSS-----------SIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~--l~~lGr~~eAi~~ye-----------kALkl~P~~~~ 113 (338)
+.++|.+ +..+|++++|+.+|+ +++.++|....
T Consensus 111 ~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 111 KMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 9999998 999999999999999 88888887655
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.70 E-value=4.7e-08 Score=98.81 Aligned_cols=92 Identities=16% Similarity=0.067 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHh-----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSI-----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ 72 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel-----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~ 72 (338)
.+|+|++|+.+|++++++ .|+++. .+ |||.+|..+|+|++|+.+|++ |+..+++.+-
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~--------------aL~i~~~~lG 386 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR--------------MVDGYMKLYH 386 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--------------HHHHHHHHcC
Confidence 479999999999999996 467776 22 999999999999999999855 6777777643
Q ss_pred h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 73 M-LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 73 l-~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
- +|+.+..+++||.+|..+|++++|+..|++|+++
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 2444577899999999999999999999999976
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.66 E-value=2.1e-09 Score=85.41 Aligned_cols=85 Identities=13% Similarity=-0.073 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHH
Q 019586 57 PRGVDSHLKAYERAQQM---LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADE 130 (338)
Q Consensus 57 lg~~deAi~~yekAL~l---~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e 130 (338)
+|++++|+.+|++++++ +|+++.+|+++|.+|..+|++++|+.+|+++++++|+++..+ +.+....++.+.|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56788999999999999 698999999999999999999999999999999999998733 333567788888888
Q ss_pred hhhhcccCCCh
Q 019586 131 NIDSNVDVNPI 141 (338)
Q Consensus 131 ~~~~al~~~P~ 141 (338)
.+..++..+|.
T Consensus 83 ~~~~al~~~p~ 93 (117)
T 3k9i_A 83 LLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhCCC
Confidence 88877765554
No 177
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.65 E-value=1.5e-07 Score=87.96 Aligned_cols=138 Identities=9% Similarity=-0.038 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHcCCHHHHHHHHHhhCc------C--CcC------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRVKP------A--VAD------------ 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~-------a~nLG~~y~~~G~~dEAi~~~~k~~p------~--~~d------------ 55 (338)
.|++++|+.+|++++.+.+.... .+++|.++..+|++++|+.+|+++.. . .+.
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 58999999999999998654322 22999999999999999999998321 1 111
Q ss_pred -CCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---ccc-------chh
Q 019586 56 -GPRGVDSHLKAYERAQQMLKD-----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILP-------TTN 119 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~l~Pd-----~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~-------~l~ 119 (338)
..|++++|+.+|++++++.+. ...++.++|.++...|++++|..++++++.+.+.... ... .+.
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 279999999999999999875 3467899999999999999999999999987443211 111 113
Q ss_pred hhcCccHHHHHhhhhcccCCC
Q 019586 120 AIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 120 ~~~~~~~~A~e~~~~al~~~P 140 (338)
...++.+.+...+...+...|
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCC
T ss_pred HHCCCHHHHHHHHHhCCCCCC
Confidence 366777777777777776554
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.63 E-value=1.7e-08 Score=95.84 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+.|+|++|+.+|+++++++|++..++ ++|.+|..+|+| ++|+.+|+++++++|++..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~---------------------~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM---------------------DSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH---------------------HHHHHHHHHTTC--------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHHCCCCHHH
Confidence 57899999999999999999999977 999999999999 55666666799999999999
Q ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGD-RVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~-l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.+|+.+ ....+..+++...|.+++...|.++.
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999998 55667788889999999999998764
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.63 E-value=2e-07 Score=89.96 Aligned_cols=143 Identities=8% Similarity=-0.109 Sum_probs=109.9
Q ss_pred CCCH-HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC----------HHHHHHHHHhh---CcCCcCC----------C
Q 019586 3 QNNY-IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR----------IGEAKETLRRV---KPAVADG----------P 57 (338)
Q Consensus 3 ~g~~-eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~----------~dEAi~~~~k~---~p~~~d~----------l 57 (338)
.|.+ ++|+.++.++|.++|++..+| ..+.++...++ +++++..+..+ .|.+... +
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 3444 589999999999999999977 88888887776 68899999884 4444431 4
Q ss_pred C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHccCCCCcccccch---hhhc---------
Q 019586 58 R--GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR-LFDAFLGSSSIWQPQPCKDHILPTT---NAIK--------- 122 (338)
Q Consensus 58 g--~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr-~~eAi~~yekALkl~P~~~~~l~~l---~~~~--------- 122 (338)
+ .+++++.++.++++++|.+..+|++.+.++...|+ +++++.++.++++.+|.+....... ....
T Consensus 122 ~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 122 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 5 58999999999999999999999999999999999 5899999999999999887622111 1111
Q ss_pred -----CccHHHHHhhhhcccCCChhhhh
Q 019586 123 -----TRDDFADENIDSNVDVNPIVLSK 145 (338)
Q Consensus 123 -----~~~~~A~e~~~~al~~~P~~~~K 145 (338)
+..+.+.+.+..+++.+|...+-
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 22344667777788888876653
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.61 E-value=4.8e-08 Score=75.80 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.+|.++...|++ ++|+.+|++++++.|+.+.+++++|.++..+|++++|+.+|++++++
T Consensus 9 ~l~~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 9 ELGNDAYKKKDF---------------------DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCH---------------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 899999999999 55666667799999999999999999999999999999999999999
Q ss_pred CCCC-------ccc---ccchhhhcCccHHHHHhhhhcccCCC
Q 019586 108 QPCK-------DHI---LPTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 108 ~P~~-------~~~---l~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
.|.+ ... ++.+....+..+.|.+.+...+...|
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8876 221 12223455555566666655554444
No 181
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.59 E-value=3.3e-07 Score=89.93 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhh-CcCCcCC---------------CCCHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRV-KPAVADG---------------PRGVD 61 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~-~p~~~d~---------------lg~~d 61 (338)
.+++++|+.+|+++++. .+..++ ++|.+|.. .+++++|+.+|+++ ...+++. .++++
T Consensus 236 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 46677777777777665 344444 77777777 77777777777773 2222221 25777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcc
Q 019586 62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQS---RLFDAFLGSSSIWQP 107 (338)
Q Consensus 62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG---r~~eAi~~yekALkl 107 (338)
+|+.+|+++++. .++.++++||.+|...| ++++|+.+|+++++.
T Consensus 314 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 314 QAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 777777777664 45667777777776655 667777777777665
No 182
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=2.3e-07 Score=88.29 Aligned_cols=109 Identities=6% Similarity=-0.126 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHH----HHc---CCHHHHHHHHHhhCcCCcC-------------CCCCHH--
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICL----MKQ---GRIGEAKETLRRVKPAVAD-------------GPRGVD-- 61 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y----~~~---G~~dEAi~~~~k~~p~~~d-------------~lg~~d-- 61 (338)
++++++.++.++|.++|++..+| +++.++ ... +++++++..+.++...++. .++.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 89999999999999999999977 899998 777 8999999999995444433 267777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHccCCCCcc
Q 019586 62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSR------LFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr------~~eAi~~yekALkl~P~~~~ 113 (338)
+++.+++++|+++|.+..+|++++.++...|+ +++++.++.+++.++|.+..
T Consensus 164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999998 99999999999999999876
No 183
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.59 E-value=2.4e-07 Score=76.80 Aligned_cols=100 Identities=11% Similarity=0.046 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHh-hCcCCcC--------------CCCCHHHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRR-VKPAVAD--------------GPRGVDSHLKAYE 68 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k-~~p~~~d--------------~lg~~deAi~~ye 68 (338)
+++++|+.+|++|.+.+... ++ ||.+|...+.+++|+.+|++ +...++. ..+++++|+.+|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~-lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC-LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH-HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh-HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 46899999999999987444 44 99999999999999999999 3333333 2679999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccC
Q 019586 69 RAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~ 108 (338)
+|.+. .++.++++||.+|.. .+++++|+.+|+++.+..
T Consensus 86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99986 689999999999999 999999999999998764
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=1.4e-07 Score=91.82 Aligned_cols=157 Identities=6% Similarity=-0.129 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-CHHHHHHHHHhhCcCCcCC-------------C-C-CHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-RIGEAKETLRRVKPAVADG-------------P-R-GVDSHLKA 66 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-~~dEAi~~~~k~~p~~~d~-------------l-g-~~deAi~~ 66 (338)
+..++|+.++.++|.++|++..+| .++.++...| .+++++..+.++...+|.. + + ++++++..
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 345799999999999999999988 9999999999 5999998888854444431 2 5 77888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLF--------DAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSN 135 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~--------eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~a 135 (338)
+.++++++|.+..+|+.++.++...|+++ +++.++.++++.+|.+....... ....+..
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~---------- 217 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA---------- 217 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC----------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc----------
Confidence 88888888888888888888888888887 88888888888888876522111 0011110
Q ss_pred ccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhh
Q 019586 136 VDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVV 176 (338)
Q Consensus 136 l~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
+. .+..--..+....++|...|+...++.++.-+.
T Consensus 218 ----~~--~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 218 ----ET--SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp ----CC--CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----cc--chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00 000011223344567778888888888866655
No 185
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.58 E-value=3.8e-07 Score=71.73 Aligned_cols=76 Identities=12% Similarity=-0.062 Sum_probs=64.9
Q ss_pred CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 019586 20 APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF 98 (338)
Q Consensus 20 dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi 98 (338)
+|++++.+ .+|.++...++- ...++|...+++|++++|+++.+++.+|.++++.|+|.+|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~------------------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ------------------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT------------------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC------------------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 67888866 899988766551 12367788888899999999999999999999999999999
Q ss_pred HHHHHHHccCCCCcc
Q 019586 99 LGSSSIWQPQPCKDH 113 (338)
Q Consensus 99 ~~yekALkl~P~~~~ 113 (338)
.+|+++++.+|..+.
T Consensus 64 ~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 64 DTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHTCCCTTCC
T ss_pred HHHHHHHhhCCCCcc
Confidence 999999999999443
No 186
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.55 E-value=9e-07 Score=86.82 Aligned_cols=101 Identities=10% Similarity=-0.037 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhh-CcCCcC--------------CCCCHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRV-KPAVAD--------------GPRGVDS 62 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~-~p~~~d--------------~lg~~de 62 (338)
.+++++|+.+|++|++. ++..++ +||.+|.. .+++++|+.+|+++ ...++. ..+++++
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 45666666666666554 344544 66666666 66666666666662 222221 1456666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcc
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl 107 (338)
|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 206 A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 206 SAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 66666666553 345666666666665 56666666666666554
No 187
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.54 E-value=1.6e-07 Score=93.22 Aligned_cols=92 Identities=12% Similarity=-0.014 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHHHHh-----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSI-----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ 72 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel-----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~ 72 (338)
++|+|++|+..|++++++ .|+++. .+ |||.+|..+|+|++|+.++++ ++..+++.+-
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~--------------~L~i~~~~lg 364 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR--------------TMEPYRIFFP 364 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------HHHHHHHHSC
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH--------------HHHhHHHHcC
Confidence 368999999999999986 466766 22 999999999999999999855 6777777643
Q ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 73 -MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 73 -l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
-.|+.+..+++||.+|..+|++++|+..|++|+++
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22444577899999999999999999999999875
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=5.7e-07 Score=86.76 Aligned_cols=108 Identities=9% Similarity=-0.063 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC--HHHHHHHHHhhCcCCcC-------------CCCC-HHHHHHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR--IGEAKETLRRVKPAVAD-------------GPRG-VDSHLKAYE 68 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~--~dEAi~~~~k~~p~~~d-------------~lg~-~deAi~~ye 68 (338)
+++++.++..++..+|.+..+| +++.++...|+ |++++.++.++...++. ..+. +++++.++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 7899999999999999999988 99999999994 99999999994443333 2566 699999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHccCCCCcc
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQ--------------SRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~l--------------Gr~~eAi~~yekALkl~P~~~~ 113 (338)
++|+.+|.+..+|+++|.++... +.+++++.++.+++.++|++..
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S 228 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 228 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999887 5689999999999999999876
No 189
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.52 E-value=3.1e-07 Score=90.03 Aligned_cols=108 Identities=7% Similarity=-0.041 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH-------HHHH-HHHHh--hC---cCCcC----------CCCCH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI-------GEAK-ETLRR--VK---PAVAD----------GPRGV 60 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~-------dEAi-~~~~k--~~---p~~~d----------~lg~~ 60 (338)
.+.+|+.+|++|++++|+++.++ .++.||.....+ -+++ ..++. .. |..+. ..|++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 46899999999999999999988 777777521111 0111 11112 12 22222 16899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++|+..+++|+.++|+ ..+|..+|.++...|++++|+.+|++|+.++|....
T Consensus 294 d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 294 DESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999975 678888999999999999999999999999997643
No 190
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.52 E-value=3.1e-07 Score=90.41 Aligned_cols=103 Identities=11% Similarity=-0.011 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHc----CCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQ----GRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKA 66 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a-~nLG~~y~~~----G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ 66 (338)
++++|+.+|++|++.++..+.. ++||.+|... +++++|+.+|+++.+.++. ..+++++|+.+
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 7788888888888888888776 4888888655 6888888888884355544 24688888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHccCCCCcc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQS-----RLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lG-----r~~eAi~~yekALkl~P~~~~ 113 (338)
|++|++. .++.++++||.+|. .| ++++|+.+|+++. |.++.
T Consensus 274 ~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~ 319 (452)
T 3e4b_A 274 LDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA 319 (452)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence 8888764 47888888888887 55 8888888888877 55554
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.52 E-value=2.1e-07 Score=89.86 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
++|.+|...|+|++|+..|+++....+.. .+....+++..++|....+|+++|.+|..+|++++|+.+|++++++
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGS-----RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcC-----ccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 99999999999988888876621100000 0111223344478888999999999999999999999999999999
Q ss_pred CCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586 108 QPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 108 ~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+|.++..+ +.+....++.+.|...+..++.++|.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 99987733 33356777777788877777776665
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.8e-07 Score=86.37 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=102.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHcCCHHHHHHHHHhhCc---CCc------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK------------------MCNLGICLMKQGRIGEAKETLRRVKP---AVA------ 54 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~------------------a~nLG~~y~~~G~~dEAi~~~~k~~p---~~~------ 54 (338)
..|+|++|+..|.++++..|...+ ..++|.+|..+|+|++|+.+|.++.+ ...
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence 368999999999999999886532 23999999999999999999998432 111
Q ss_pred ----------CCCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc-----
Q 019586 55 ----------DGPRGVDSHLKAYERAQQML------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH----- 113 (338)
Q Consensus 55 ----------d~lg~~deAi~~yekAL~l~------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~----- 113 (338)
...|++++|+..+++++.+. +....++.+||.+|..+|+|.+|..++++++........
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 14789999999999999864 334678999999999999999999999998876443222
Q ss_pred ----cccchhhhcCccHHHHHhhhhccc
Q 019586 114 ----ILPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 114 ----~l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
..+.+....+....|...+..++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 111223455666666666655543
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=2e-07 Score=74.24 Aligned_cols=83 Identities=12% Similarity=0.008 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------CCCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKP---AVAD----------------GPRGVDSHLKAYERAQQMLKDL------ESEMM 82 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------------~lg~~deAi~~yekAL~l~Pd~------~~a~~ 82 (338)
++|.+|...|++++|+.+|+++.. ...+ ..|++++|+.+|++++++.+.. ..++.
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 93 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 93 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 999999999999999999999332 2111 2889999999999999987553 57889
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 83 NKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 83 nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
++|.++..+|++++|+.+|++++++.+.
T Consensus 94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543
No 194
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=9.6e-07 Score=85.87 Aligned_cols=109 Identities=9% Similarity=-0.106 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHc-C-CHHHHHHHHHhhCcCCcCC-------------CCCHH-------
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQ-G-RIGEAKETLRRVKPAVADG-------------PRGVD------- 61 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~-G-~~dEAi~~~~k~~p~~~d~-------------lg~~d------- 61 (338)
.+++++.++.++|..+|++..+| +++.++... + ++++++..+.++...++.. ++.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 59999999999999999999988 999999998 8 9999999999976666551 33444
Q ss_pred -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHccCCCCcc
Q 019586 62 -SHLKAYERAQQMLKDLESEMMNKGGDRVEQSR-------LFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 62 -eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr-------~~eAi~~yekALkl~P~~~~ 113 (338)
+++.+++++|+++|.+..+|+++|.++..+++ +++++.++.+++.++|.+..
T Consensus 184 ~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999998 79999999999999999876
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.39 E-value=2.6e-07 Score=72.38 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhccc
Q 019586 61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
++|+..|+++++++|+++.+|+++|.+|...|++++|+.+|+++++++|.+... ++.+....++.+.|...+..++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999999998763 33345677777788887777766
Q ss_pred CCCh
Q 019586 138 VNPI 141 (338)
Q Consensus 138 ~~P~ 141 (338)
.+|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 5553
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.32 E-value=2.7e-06 Score=83.66 Aligned_cols=101 Identities=10% Similarity=-0.002 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHH-H--HHcCCHHHHHHHHHh-hCcCCcCC--------------CCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGIC-L--MKQGRIGEAKETLRR-VKPAVADG--------------PRGVDSH 63 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~-y--~~~G~~dEAi~~~~k-~~p~~~d~--------------lg~~deA 63 (338)
.+++++|+.+|+++. |+++.++ +||.+ | ...+++++|+.+|++ +...++.+ ..++++|
T Consensus 230 ~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp SCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 368999999999998 8888866 99999 4 578999999999999 44444431 3399999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCC
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P 109 (338)
+.+|++|. +.++.++++||.+|.. ..++++|+.+|+++.+...
T Consensus 307 ~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 307 EAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 99999998 9999999999998887 4499999999999987543
No 197
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=2.5e-06 Score=73.80 Aligned_cols=91 Identities=9% Similarity=0.114 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhC-C-CCHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML-K-DLESEM 81 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~-P-d~~~a~ 81 (338)
....++..|.++++.++...+.. ++|+++.+.++... .++++..|+..++.+ | +..+++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~------------------~~~gI~lLe~ll~~~~p~~~rd~l 74 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDD------------------IRKGIVLLEELLPKGSKEEQRDYV 74 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHH------------------HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHH------------------HHHHHHHHHHHHhcCCccchHHHH
Confidence 45678899999999888888855 99999999884421 266777778888888 7 568999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+||..++++|+|++|+.+++++|+++|++.+
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999999999999876
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.28 E-value=1.6e-06 Score=67.16 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
..|+|++|+.+|+++++++|++..+| ++|.+|..+|++++|+..|++
T Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 47999999999999999999999977 999999999999665555544
No 199
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.26 E-value=4.1e-06 Score=93.73 Aligned_cols=180 Identities=12% Similarity=-0.049 Sum_probs=124.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC--------CCCCHHHHHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD--------GPRGVDSHLKAYERAQQM 73 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------~lg~~deAi~~yekAL~l 73 (338)
..|.|+||..+|+++- . ....++..+...|+|++|+++++++.....+ ..|++++|+.+|.+|
T Consensus 1061 ~lglyEEAf~IYkKa~-----~-~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----V-NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----C-HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 4689999999999972 1 1114455566899999999999997554433 489999999999886
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc-c-cccchhhhcCccHHHHHhhhhcccCCChhhhhhhhhhh
Q 019586 74 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD-H-ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKK 151 (338)
Q Consensus 74 ~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~-~-~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~k 151 (338)
+++..|+.+|.++.+.|+|++|+.+|..+.+..+... . .++...++.++.+. .+.+..... .+.....+..+..
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI~~~n-~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFINGPN-NAHIQQVGDRCYD 1207 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHHhCCC-HHHHHHHHHHHHh
Confidence 8899999999999999999999999999998885531 1 11111233344443 333333222 2345556666667
Q ss_pred hcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 152 LFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 152 l~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
...+..|+.+..+. ..|..++. .+....++.+|+.++..+.+.
T Consensus 1208 eg~YeeA~~~Y~kA-~ny~rLA~----tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV-SNFGRLAS----TLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred cCCHHHHHHHHHhh-hHHHHHHH----HHHHhCCHHHHHHHHHHhCCH
Confidence 77777787776664 46666666 445556677777777666554
No 200
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.20 E-value=7.2e-06 Score=64.66 Aligned_cols=68 Identities=16% Similarity=0.071 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM-------LKDLESEMMNKGGDRVEQSRLFDAF 98 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l-------~Pd~~~a~~nLG~~l~~lGr~~eAi 98 (338)
.+.+|..+..+|+|..|+.+| ++|++. .+..+.++.+||.++.++|++++|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~---------------------~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~ 66 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWM---------------------EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL 66 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH---------------------HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHH---------------------HHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHH
Confidence 349999999999996555555 445554 2456789999999999999999999
Q ss_pred HHHHHHHccCCCCccc
Q 019586 99 LGSSSIWQPQPCKDHI 114 (338)
Q Consensus 99 ~~yekALkl~P~~~~~ 114 (338)
.+++++++++|++...
T Consensus 67 ~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 67 LLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999998764
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.16 E-value=3.3e-06 Score=80.83 Aligned_cols=104 Identities=8% Similarity=0.043 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc------C---------------CCC
Q 019586 3 QNNYIEAEDAYRRALSIAP--DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVA------D---------------GPR 58 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldP--d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~------d---------------~lg 58 (338)
.|++++|+.++.+.|..+| ++.+++ .++.+|..+|+.+.|.+.++++...++ + .-+
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence 4788888888888888886 566666 888888888888888888876332222 1 123
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
++.+|...|+++.+..|++......++ ++..+|++++|...++.+++.
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSH
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888877776333222222 888888888888888877776
No 202
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.12 E-value=8.6e-06 Score=77.55 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHH--HH-HHHHHHHHc-----CCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586 5 NYIEAEDAYRRALSIAPDNNK--MC-NLGICLMKQ-----GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~--a~-nLG~~y~~~-----G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd 76 (338)
...+|...+++|++++|+... +| .||.+|... |+. ++|..+|++|++++|+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~---------------------ekA~~~ferAL~LnP~ 236 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM---------------------EKAHTAFEHLTRYCSA 236 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH---------------------HHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH---------------------HHHHHHHHHHHHhCCC
Confidence 357899999999999999544 77 999888774 666 7777778889999997
Q ss_pred C-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHccCCCC-cc
Q 019586 77 L-ESEMMNKGGDRVE-QSRLFDAFLGSSSIWQPQPCK-DH 113 (338)
Q Consensus 77 ~-~~a~~nLG~~l~~-lGr~~eAi~~yekALkl~P~~-~~ 113 (338)
. ...++.+|..+.. +|++++|..+++++++.+|.. +.
T Consensus 237 ~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 237 HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 5 9999999999988 599999999999999999985 44
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.06 E-value=8.2e-06 Score=82.37 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHHh-----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSI-----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ 72 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel-----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~ 72 (338)
.+|+|++|+.+|+++|++ .|+++. .+ |||.+|..+|+|++|+.+|++ |+..+++.+
T Consensus 363 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~--------------Al~i~~~~l- 427 (490)
T 3n71_A 363 YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK--------------AYAILLVTH- 427 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHT-
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--------------HHHHHHHHh-
Confidence 479999999999999987 577777 22 999999999999999999855 777777764
Q ss_pred hCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 73 MLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 73 l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|+++ +.+.+|+.++.++|+|.+|...|.++.+
T Consensus 428 -G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 428 -GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46665 5678899999999999999999988754
No 204
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.01 E-value=8.3e-06 Score=78.07 Aligned_cols=112 Identities=12% Similarity=-0.012 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-----CHHHHHH--HHHHHHcC--CHHHHHHHHHhhCcCCcC------------CCCCH
Q 019586 2 QQNNYIEAEDAYRRALSIAPD-----NNKMCNL--GICLMKQG--RIGEAKETLRRVKPAVAD------------GPRGV 60 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd-----~a~a~nL--G~~y~~~G--~~dEAi~~~~k~~p~~~d------------~lg~~ 60 (338)
+.|+.+.|.+.+++..+.+|+ +....+| |++....| ++.+|...|+++...+++ .+|++
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCH
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCH
Confidence 578999999999999999993 4444455 44466667 999999999997777765 38999
Q ss_pred HHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 61 DSHLKAYERAQQM----------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 61 deAi~~yekAL~l----------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
++|...+++++++ +|+++.++.|+..+...+|+ +|.++++++.+.+|+++.++
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999988877 58999999999999999998 99999999999999998743
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.99 E-value=2.4e-05 Score=61.56 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHhC-------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIA-------PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM 73 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld-------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l 73 (338)
+.|+|..|+.+|++|+... +.....+ +||.||.++|++ +.|+..+++++++
T Consensus 17 ~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~---------------------~~A~~~~~~al~l 75 (104)
T 2v5f_A 17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL---------------------DKALLLTKKLLEL 75 (104)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHhc
Confidence 4689999999999999974 2334455 999999999999 5566666779999
Q ss_pred CCCCHHHHHHHHH
Q 019586 74 LKDLESEMMNKGG 86 (338)
Q Consensus 74 ~Pd~~~a~~nLG~ 86 (338)
+|++..++.|++.
T Consensus 76 ~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 76 DPEHQRANGNLKY 88 (104)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHhhHHH
Confidence 9999999998873
No 206
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.95 E-value=2.4e-05 Score=87.73 Aligned_cols=130 Identities=7% Similarity=0.003 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCC----CHHHH----------------------------HHHHHHHHcCCHHHHHHHHHhh
Q 019586 2 QQNNYIEAEDAYRRALSIAPD----NNKMC----------------------------NLGICLMKQGRIGEAKETLRRV 49 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd----~a~a~----------------------------nLG~~y~~~G~~dEAi~~~~k~ 49 (338)
..|.+.+|++.|++++ +.|. +...+ .+|.++...|+|+||...|+++
T Consensus 997 ~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 997 TADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred hCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4688999999999998 5554 22221 1388999999999999999995
Q ss_pred CcCCcC-------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchhhhc
Q 019586 50 KPAVAD-------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIK 122 (338)
Q Consensus 50 ~p~~~d-------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~~~~ 122 (338)
. .+.. ..+++++|++.+++ .+.+.+|+.+|.++...|++++|+.+|.++ -+|..-.-.+......
T Consensus 1076 ~-~~~~A~~VLie~i~nldrAiE~Aer-----vn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1076 D-VNTSAVQVLIEHIGNLDRAYEFAER-----CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred C-CHHHHHHHHHHHHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHc
Confidence 4 2222 24566666666654 477999999999999999999999999887 2222211222335677
Q ss_pred CccHHHHHhhhhcccCCC
Q 019586 123 TRDDFADENIDSNVDVNP 140 (338)
Q Consensus 123 ~~~~~A~e~~~~al~~~P 140 (338)
+..+.+.+.+..+....+
T Consensus 1148 GkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A 1148 GNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred CCHHHHHHHHHHHHhhcc
Confidence 888888888877665553
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=5.1e-06 Score=78.54 Aligned_cols=110 Identities=5% Similarity=-0.137 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHH------H-HHHHHHHHcCCHHHHHHHHHhhCc------CCcC-------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKM------C-NLGICLMKQGRIGEAKETLRRVKP------AVAD------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a------~-nLG~~y~~~G~~dEAi~~~~k~~p------~~~d------------- 55 (338)
..|+|++|+.+|.+++.+.+..... . ++|.++...|++++|+.+++++.. ....
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 3589999999999999987665442 2 889999999999999999988321 1111
Q ss_pred CCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 56 GPRGVDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 56 ~lg~~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
..|++++|+..+++++.. .+....++..+|.+|..+|++++|..+|++++.+.+..
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 268999999999999886 34456889999999999999999999999999886643
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.81 E-value=5.7e-05 Score=71.87 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=72.3
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCC-cc---cccchhh
Q 019586 52 AVADGPRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQ-----SRLFDAFLGSSSIWQPQPCK-DH---ILPTTNA 120 (338)
Q Consensus 52 ~~~d~lg~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~l-----Gr~~eAi~~yekALkl~P~~-~~---~l~~l~~ 120 (338)
.....++....|...+++|++++|+ ++.+|..||.+|... |+.++|..+|++|++++|+. .. .++....
T Consensus 171 gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 171 LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 3344566889999999999999999 567999999999995 99999999999999999975 44 2222122
Q ss_pred h-cCccHHHHHhhhhcccCCChh
Q 019586 121 I-KTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 121 ~-~~~~~~A~e~~~~al~~~P~~ 142 (338)
. .++.+.+...+..++..+|..
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HhcCCHHHHHHHHHHHHcCCCCC
Confidence 3 467788888888888877763
No 209
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.67 E-value=3.8e-05 Score=76.96 Aligned_cols=102 Identities=9% Similarity=0.009 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC--------CCCCHHHHHHHHHHHHHhC
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD--------GPRGVDSHLKAYERAQQML 74 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------~lg~~deAi~~yekAL~l~ 74 (338)
.|+|++|+.+|.++ ..+..+|.||.++|+|++|+..|+++.....+ ..|+++.|..+..+ |.+.
T Consensus 135 ~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ 206 (449)
T 1b89_A 135 EKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 206 (449)
T ss_dssp --CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC
T ss_pred cCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC
Confidence 45666666666655 11226666666666666666666665311111 15566666555553 2233
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 75 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 75 Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
++-...+...|.+.|++++|+..++.++.+++.+..+.
T Consensus 207 ---ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f 244 (449)
T 1b89_A 207 ---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred ---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence 33344566788888888888888888888887776544
No 210
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.63 E-value=1.3e-05 Score=80.35 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC---------CCCCHHHHHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD---------GPRGVDSHLKAYERAQQ 72 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------~lg~~deAi~~yekAL~ 72 (338)
+.|+|++|+.+++.+++..++......|+.+|.+.|+++++...++. |+... ..|.|++|+.+|.++
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ------------------------------------CHHHHTTTTTC--C----------------CTTTHHHHHHHT--
T ss_pred hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 46888999998888887543311122666666666666666655544 11111 134555555555544
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 73 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 73 l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
..|..||.++.++|+|++|+++|+++
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 24445555555555555555555554
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.001 Score=51.80 Aligned_cols=50 Identities=18% Similarity=0.028 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD 55 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d 55 (338)
.++|+.++++|++++|++..+. .+|..+...|+|++|+.+|+++....+.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6899999999999999999977 9999999999997777777774443333
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.38 E-value=0.00099 Score=54.67 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhh-CcCCcC--------------CCCCHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRV-KPAVAD--------------GPRGVDSH 63 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~-~p~~~d--------------~lg~~deA 63 (338)
+.+++|+.+|++|.+. .++.++ +||.+|.. .+++++|+.+|+++ ...++. ..+++++|
T Consensus 39 ~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 116 (138)
T 1klx_A 39 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116 (138)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence 4678899999999987 577766 99999999 89999999999993 333333 26799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 019586 64 LKAYERAQQMLKDLESEMMNKGG 86 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~ 86 (338)
+.+|++|.+. .++.+..+|+.
T Consensus 117 ~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 117 VKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHHHHC--CCHHHHHHHhh
Confidence 9999999997 46777776654
No 213
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.34 E-value=0.00093 Score=55.90 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhC-C-CCHHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML-K-DLESEMM 82 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a-~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~-P-d~~~a~~ 82 (338)
...++..|.+++..++...+. +++|+++....+...- .+++..++..++-. | ..-+.+|
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~------------------~~GI~lLe~l~~~~~p~~~Rd~lY 78 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDI------------------RKGIVLLEELLPKGSKEEQRDYVF 78 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHH------------------HHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHH------------------HHHHHHHHHHHhcCCcchHHHHHH
Confidence 456778888888888777774 4999999998877541 45666666666655 4 3458899
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 83 NKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 83 nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.||..++++|+|.+|..+++..|+++|.+.+
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999977
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.0015 Score=63.97 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=90.6
Q ss_pred HHHHHhCCCCHHHH---HHHHHHHHcCC---HHHHHHHHHh---hCcCCcCC-------------C--CC--HHHHH-HH
Q 019586 14 RRALSIAPDNNKMC---NLGICLMKQGR---IGEAKETLRR---VKPAVADG-------------P--RG--VDSHL-KA 66 (338)
Q Consensus 14 ~kALeldPd~a~a~---nLG~~y~~~G~---~dEAi~~~~k---~~p~~~d~-------------l--g~--~deAi-~~ 66 (338)
+++....|.+..+| -.|..|...+. +.+|+.+|++ +.|.++.+ . .. .-+++ ..
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 34455567776655 66777766554 5899999999 45555431 0 11 11111 12
Q ss_pred HH--HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhhcccCCChh
Q 019586 67 YE--RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 67 ye--kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al~~~P~~ 142 (338)
++ .++..+|..+.+|..+|.++...|++++|+.++++|+.++|.... .++.+....|+.+.|.+.+..++.++|..
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 22 233567999999999999999999999999999999999975321 33444678899999999999999989863
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.00092 Score=66.06 Aligned_cols=74 Identities=12% Similarity=0.037 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHHh-----CCCCHH----HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSI-----APDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ 72 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel-----dPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~ 72 (338)
.+|+|++|+.+|++++++ .|+++. ++|||.+|..+|++++|+.+|++ |+..+++.+
T Consensus 341 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~--------------Al~i~~~~l- 405 (429)
T 3qwp_A 341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL--------------AFDIMRVTH- 405 (429)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHT-
T ss_pred hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH--------------HHHHHHHhc-
Confidence 369999999999999986 477777 22999999999999999999855 777777764
Q ss_pred hCCCCH---HHHHHHHHHHHHC
Q 019586 73 MLKDLE---SEMMNKGGDRVEQ 91 (338)
Q Consensus 73 l~Pd~~---~a~~nLG~~l~~l 91 (338)
.|+++ ..+.+|+.++.++
T Consensus 406 -G~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 406 -GREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHHHHHH
Confidence 46666 5567777776553
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.00057 Score=67.85 Aligned_cols=81 Identities=11% Similarity=-0.015 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHcc-----CCCCcc------ccc
Q 019586 56 GPRGVDSHLKAYERAQQM-----LKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQP-----QPCKDH------ILP 116 (338)
Q Consensus 56 ~lg~~deAi~~yekAL~l-----~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALkl-----~P~~~~------~l~ 116 (338)
..|+|++|+..|++++++ .|+++ .++.+||.+|..+|+|++|+.+|+++|++ -|+++. .++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999999886 35554 77899999999999999999999999976 445554 223
Q ss_pred chhhhcCccHHHHHhhhhcc
Q 019586 117 TTNAIKTRDDFADENIDSNV 136 (338)
Q Consensus 117 ~l~~~~~~~~~A~e~~~~al 136 (338)
.+...+|+.+.|...+..++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 33456666666666666654
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.88 E-value=0.0028 Score=66.35 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=0.0
Q ss_pred cCCCCchhHHHHH
Q 019586 278 YLLPDDEDFEEAI 290 (338)
Q Consensus 278 ~~~~~~~~~~~~~ 290 (338)
-+||-...|-.|+
T Consensus 650 ~~~~~~~~~~~~~ 662 (679)
T 4e6h_A 650 KVLPKRQYFKVTI 662 (679)
T ss_dssp -------------
T ss_pred HhCcchhhhcccc
Confidence 3599999998844
No 218
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.67 E-value=0.0057 Score=64.03 Aligned_cols=100 Identities=6% Similarity=-0.122 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHH-HHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHH
Q 019586 8 EAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAK-ETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQ 72 (338)
Q Consensus 8 eAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi-~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~ 72 (338)
.....|++||...|.+++.| .++..+...|+.++|+ ..|+++....|. ..|+++.|...|++++.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35577888888888888877 8888888888888886 888884333332 26788888888888887
Q ss_pred hC-----------CC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 73 ML-----------KD-----------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 73 l~-----------Pd-----------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.- |. ...+|..++......|..+.|...|.+|++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 52 42 3456777777777888888888888888876
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.41 E-value=0.0067 Score=52.19 Aligned_cols=62 Identities=8% Similarity=-0.065 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHhC-C-CCHH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 5 NYIEAEDAYRRALSIA-P-DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 5 ~~eeAi~~y~kALeld-P-d~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
++++|+..++..++.+ | +..+ .|+||..|+++|+| ++|..+++++++++|++..+.
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y---------------------~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY---------------------EKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH---------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHhcCCCCHHHH
Confidence 5789999999999998 7 3445 55999999999999 556666677999999999887
Q ss_pred HHHHHH
Q 019586 82 MNKGGD 87 (338)
Q Consensus 82 ~nLG~~ 87 (338)
.-+-.+
T Consensus 109 ~Lk~~i 114 (152)
T 1pc2_A 109 ELERLI 114 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 220
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.31 E-value=0.045 Score=46.63 Aligned_cols=70 Identities=7% Similarity=-0.031 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-LESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd-~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
.+++|+++.+..+-+.- .+++..++..++-.|. .-+.+|.|+..++++|+|.+|..+.+..
T Consensus 42 ~F~YAw~Lv~S~~~~di------------------~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDE------------------RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHHHHSSSHHHH------------------HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHH------------------HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55999999999887442 6788889999998885 4588899999999999999999999999
Q ss_pred HccCCCCcc
Q 019586 105 WQPQPCKDH 113 (338)
Q Consensus 105 Lkl~P~~~~ 113 (338)
|+++|++.+
T Consensus 104 L~~eP~n~Q 112 (144)
T 1y8m_A 104 FEHERNNKQ 112 (144)
T ss_dssp HHTCCCCHH
T ss_pred HhcCCCcHH
Confidence 999999977
No 221
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.21 E-value=0.052 Score=45.74 Aligned_cols=70 Identities=7% Similarity=-0.040 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-LESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd-~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
-+++|+++.+..+.+. ..+++..++..++..|. .-+.++.|+..++++|+|.+|..+.+..
T Consensus 43 ~F~yAw~Lv~S~~~~d------------------~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 43 RFNYAWGLIKSTDVND------------------ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHHHHSSCHHH------------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHH------------------HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5599999999887743 26788899999998884 4688999999999999999999999999
Q ss_pred HccCCCCcc
Q 019586 105 WQPQPCKDH 113 (338)
Q Consensus 105 Lkl~P~~~~ 113 (338)
|++.|++.+
T Consensus 105 L~~eP~N~Q 113 (134)
T 3o48_A 105 FEHERNNKQ 113 (134)
T ss_dssp HTTCTTCHH
T ss_pred HhhCCCCHH
Confidence 999999977
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.34 E-value=0.039 Score=48.16 Aligned_cols=96 Identities=8% Similarity=-0.091 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHhC---CCC--HH-----HHHHHHHHHHcCCHHHHHHHHHhhC------cCCcCC---CCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIA---PDN--NK-----MCNLGICLMKQGRIGEAKETLRRVK------PAVADG---PRGVDSH 63 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeld---Pd~--a~-----a~nLG~~y~~~G~~dEAi~~~~k~~------p~~~d~---lg~~deA 63 (338)
.|.|+-|+.....++.+. |+. +. ...+|.++..+|+|..|...|+++. +..+.. .+ .
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~-~--- 108 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG-N--- 108 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc-c---
Confidence 578999999999988774 332 22 2399999999999999999998821 212110 00 0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
...+..... .+...+..+.++.||.++|++.+|+..++.
T Consensus 109 ~ss~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 109 SASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp --------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 000000111 133457889999999999999999998775
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.13 E-value=0.2 Score=50.07 Aligned_cols=102 Identities=8% Similarity=0.040 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCc--CCcC------------CCCCHHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRVKP--AVAD------------GPRGVDSHLKAY 67 (338)
Q Consensus 4 g~~eeAi~~y~kALel--dPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p--~~~d------------~lg~~deAi~~y 67 (338)
+.+++|...|++.... .|+...+..+-.+|.+.|++++|...|++... ..|+ ..|++++|...|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 4578899999988775 46555455888899999999999999998322 2233 278999999999
Q ss_pred HHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 68 ERAQQML--KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 68 ekAL~l~--Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
++..+.. | +...|..|-.+|.+.|++++|...|++...
T Consensus 164 ~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 164 AHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 9988753 4 567888999999999999999999987643
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.91 E-value=0.041 Score=47.58 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=73.9
Q ss_pred HhCCCCHHHH-HHHHHHHHcCCH------HHHHHHHHhhCcCCc---CC-----------------CCCHHHHHHHHHHH
Q 019586 18 SIAPDNNKMC-NLGICLMKQGRI------GEAKETLRRVKPAVA---DG-----------------PRGVDSHLKAYERA 70 (338)
Q Consensus 18 eldPd~a~a~-nLG~~y~~~G~~------dEAi~~~~k~~p~~~---d~-----------------lg~~deAi~~yekA 70 (338)
-+.|.+.+.| ++...+-+.|+. ++-+..|+++....| .. .++.++|...|+.|
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3567777755 666666666776 666777777221111 11 34788999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 71 QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 71 L~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
+.+...++..|...+..-..+|++..|...+.+|+.+.|...+++
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 999999999999999999999999999999999999998866643
No 225
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.011 Score=44.27 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=53.1
Q ss_pred cCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHh-hhhhhhhhhhhcc-ccccCC
Q 019586 137 DVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQT-VLAQQRGVQQLAP-FGNSWN 198 (338)
Q Consensus 137 ~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~-~~~d~r~~~~~~~-~~~~~~ 198 (338)
+.+|....|....+++..+.+++++...+.+...|+..+. . ++.|||++++|++ +|++++
T Consensus 10 f~~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~--~~~~~dPrv~~~l~~L~g~~~~ 71 (71)
T 2llv_A 10 FADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIG--QDLFTDPRLMTIMATLMGVDLN 71 (71)
T ss_dssp HHSSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHH--HHTTTCHHHHHHHHHHHTTTTC
T ss_pred ccChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHH--HHHhhCcHHHHHHHHHHcCCCC
Confidence 3367888888888999999999999999999999999998 6 8999999999999 887764
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.84 E-value=0.41 Score=47.54 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHH-HHHhh--Cc---------CCcC-----------CC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKE-TLRRV--KP---------AVAD-----------GP 57 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~-~~~k~--~p---------~~~d-----------~l 57 (338)
+.|+.++|...|++|+.. |.....+ .++... ..+ +... .+.+. .. ..+. ..
T Consensus 225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 357889999999999999 9876544 333221 011 1100 11110 00 0000 13
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCcc
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS-RLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG-r~~eAi~~yekALkl~P~~~~ 113 (338)
++.+.|...|++| +..+.....|...+.+....+ +++.|...|+.+++.-|+.+.
T Consensus 300 ~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence 4567777778777 332234455555555555445 477788888888777776654
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.42 E-value=0.36 Score=47.97 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCC---------CHHHHHHHHHHHHHh---
Q 019586 7 IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPR---------GVDSHLKAYERAQQM--- 73 (338)
Q Consensus 7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg---------~~deAi~~yekAL~l--- 73 (338)
+.....|++++...|.....| .++..+...|+.++|...|+++... |.... +.++. +++..+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHH---HHHHHHHHHh
Confidence 456789999999999999977 9999999999999999999994444 44210 11111 2222211
Q ss_pred ----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 74 ----------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 74 ----------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
.+.....|...+..+...|.++.|...|++|
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 1112356777777777888999999999999
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.08 E-value=1 Score=44.99 Aligned_cols=104 Identities=7% Similarity=-0.006 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcC---------CHHHHHHHHHhh--CcCCcC------------C
Q 019586 2 QQNNYIEAEDAYRRALSIA--PDNNKMCNLGICLMKQG---------RIGEAKETLRRV--KPAVAD------------G 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld--Pd~a~a~nLG~~y~~~G---------~~dEAi~~~~k~--~p~~~d------------~ 56 (338)
+.|++++|+.+|++..+.. |+...+..|=.++...+ .+++|...|++. ....|+ .
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~ 117 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA 117 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 4677777777777776653 43332223323333322 356777777662 111222 2
Q ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 57 PRGVDSHLKAYERAQQM--LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 57 lg~~deAi~~yekAL~l--~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|++++|...|++..+. .| +...|+.+-..|.+.|++++|...|++..+
T Consensus 118 ~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 118 KDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56777777777776654 24 456666677777777777777777776554
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.00 E-value=0.35 Score=51.29 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--cC-CHHHHHHHHHh-h----------CcCCcC----------------
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMK--QG-RIGEAKETLRR-V----------KPAVAD---------------- 55 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~--~G-~~dEAi~~~~k-~----------~p~~~d---------------- 55 (338)
++.|+..+++..+.+|.....+..+.+... .+ +=-+|+....+ + .+.+..
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 577999999999999987765533333221 11 22234443333 1 111110
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 56 ----GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 56 ----~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
..++++-|+.+.++|+...|+.-..|+.|+.+|..+|+|+.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2789999999999999999999999999999999999999999888776
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.47 E-value=0.13 Score=49.77 Aligned_cols=50 Identities=10% Similarity=-0.152 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|++.+|+..+++++..+|-+...|..|-.+|...|+..+|+..|+++.+
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999988643
No 231
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.15 E-value=1.8 Score=40.47 Aligned_cols=109 Identities=10% Similarity=0.006 Sum_probs=80.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhC-----
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML----- 74 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~----- 74 (338)
++.|..++|++.....|+.+|.++... .|-..|+-.|+|+.|...++.+...+|+. ......|+.+|+-.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~----~~~a~~yr~lI~aE~~R~~ 83 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY----LPGASQLRHLVKAAQARKD 83 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh----hHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999977 99999999999999999888733333321 33344455554321
Q ss_pred ----------CCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 75 ----------KDLESEM---MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 75 ----------Pd~~~a~---~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+..+..| ..-+......|+.++|...-..+++..|..+.
T Consensus 84 vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 84 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1222333 33456677789999999999999999988766
No 232
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.82 E-value=0.4 Score=48.34 Aligned_cols=54 Identities=6% Similarity=-0.124 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+..|..+|.+|+.+.|+.+..|+.||.+....|+.-+|+-+|-+++....-.+.
T Consensus 168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~ 221 (497)
T 1ya0_A 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh
Confidence 478889999999999999999999999999999999999999999876554443
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.48 E-value=1 Score=45.57 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=44.9
Q ss_pred CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 019586 22 DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG 100 (338)
Q Consensus 22 d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~ 100 (338)
++...| ++|..+...|+++.|+.+|.++ ++++.+...|.. ..+.+.+..++......|++..|..+
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~--------~d~~~l~~l~~~-----~~~~~~~~~~~~~a~~~~~~~~A~~~ 745 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA--------HDLESLFLLHSS-----FNNKEGLVTLAKDAETTGKFNLAFNA 745 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------TCHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc--------cChhhhHHHHHH-----cCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 455666 9999999999999999999884 455555444432 33455555566666666666666555
Q ss_pred HHH
Q 019586 101 SSS 103 (338)
Q Consensus 101 yek 103 (338)
|.+
T Consensus 746 ~~~ 748 (814)
T 3mkq_A 746 YWI 748 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.09 E-value=0.49 Score=39.26 Aligned_cols=60 Identities=8% Similarity=-0.043 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhC-CCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586 6 YIEAEDAYRRALSIA-PDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM 82 (338)
Q Consensus 6 ~eeAi~~y~kALeld-Pd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~ 82 (338)
..++|.+++..+..+ |.... .|.||..+.++|+| ++|..+++.+|++.|++..+..
T Consensus 54 ~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y---------------------~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 54 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY---------------------EKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHhCCCCHHHHH
Confidence 356888998888876 42222 55999999999999 5556666669999999988865
Q ss_pred HHHH
Q 019586 83 NKGG 86 (338)
Q Consensus 83 nLG~ 86 (338)
-...
T Consensus 113 Lk~~ 116 (126)
T 1nzn_A 113 LERL 116 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.44 E-value=0.89 Score=38.15 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM 82 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~ 82 (338)
+..++|.+++..+..+|.... .|.||..+.++|+| ++|..+.+.++++.|++..+..
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY---------------------~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY---------------------SMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHhhCCCCHHHHH
Confidence 456899999999998885544 55999999999999 5555566668888888887765
Q ss_pred HHHH
Q 019586 83 NKGG 86 (338)
Q Consensus 83 nLG~ 86 (338)
-...
T Consensus 117 Lk~~ 120 (134)
T 3o48_A 117 LKSM 120 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.24 E-value=3.1 Score=36.31 Aligned_cols=93 Identities=13% Similarity=-0.068 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----CCCCHHHHHHHHHHHHHhCC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-----GPRGVDSHLKAYERAQQMLK 75 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----~lg~~deAi~~yekAL~l~P 75 (338)
+.|+++.|.+..+.. ++...| .||.....+|+++-|+.+|+++.....- ..|+.+.-....+.| ....
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA-~~~g 90 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA-QTRE 90 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHH-HHTT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH-HHCc
Confidence 478899998886654 455666 9999999999999999999993211100 112222212222222 1122
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 76 DLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 76 d~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
++ +....+++.+|+++++++.|.+.
T Consensus 91 ~~----n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 91 DF----GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp CH----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cH----HHHHHHHHHcCCHHHHHHHHHHC
Confidence 21 22233567778888888777654
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.13 E-value=1.4 Score=37.41 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM 82 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~ 82 (338)
+..++|.+++..+...|.... .|.||..+.++|+| ++|..+.+.+|++.|++..+..
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y---------------------~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY---------------------SMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH---------------------HHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHhcCCCcHHHHH
Confidence 356899999999998886655 55999999999999 5556666679999999987765
Q ss_pred HHHH
Q 019586 83 NKGG 86 (338)
Q Consensus 83 nLG~ 86 (338)
-...
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.70 E-value=1 Score=45.33 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
..+..|..+|.+|+.+.|+++..| .||.+....|+.-+|+.+|.+
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 456889999999999999999977 999999999999888888877
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.53 E-value=0.57 Score=47.52 Aligned_cols=73 Identities=11% Similarity=-0.057 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCcCC--cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVKPAV--ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~--~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
..+...+...|.+++|+...+.....+ +-..|++++|.+..+ .-+....|..+|..+.+.|+++.|+.||.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 367777888898888887653311100 113567777776643 2457899999999999999999999999986
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.67 E-value=0.74 Score=40.02 Aligned_cols=52 Identities=6% Similarity=-0.099 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 58 RGVDSHLKAYERAQQML---KDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 58 g~~deAi~~yekAL~l~---Pd~------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
+.|+.|+.....++.+. |+. ..+++.+|.+++..|+|..|...|+++|++.-
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 45566666666655554 332 24788999999999999999999999987643
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.56 E-value=1.4 Score=46.77 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
.+|+|+-|+.+.++|+..-|+....| .|+.||..+|+|+.|+-.+.-
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 46899999999999999999998866 999999999999999887766
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.70 E-value=2.2 Score=39.76 Aligned_cols=57 Identities=9% Similarity=-0.253 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.|..++|+......|+-+|.+......|-..|.-.|+++.|...++.+.+++|....
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 467799999999999999999999999999999999999999999999999998654
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=82.34 E-value=3.3 Score=36.80 Aligned_cols=85 Identities=11% Similarity=-0.014 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------CCCCHHHHHHHHHHHH--Hh---------------CCCCHHHH-
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVAD--------GPRGVDSHLKAYERAQ--QM---------------LKDLESEM- 81 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------~lg~~deAi~~yekAL--~l---------------~Pd~~~a~- 81 (338)
-++.++...|.|..|+-.+..++...+. .+.++..|+.+++..+ .+ +|.+.+..
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy 117 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE 117 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence 6677777777777777776664432221 3667778888877777 22 24455554
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
.-+|.++.+.|..+||+.+|.......|-.+
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 5579999999999999999999988887544
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.21 E-value=3.9 Score=39.27 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
..|++.+|+..+++++..+|-+-.+| .+-.+|...|+..+|+..|++
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36889999999999999999888877 888889999999999988866
No 245
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.56 E-value=4.4 Score=30.73 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=28.3
Q ss_pred HHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 30 GICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 30 G~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
|.-.-+.|+|++|+.+| .+|+..|.++++..|+..
T Consensus 18 Ave~D~~g~y~eAl~lY--------------~~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYY--------------KKAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHTTCHHHHHHHH--------------HHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHhccHHHHHHHH--------------HHHHHHHHHHHHHCCCHH
Confidence 34457899999999999 459999999999887654
No 246
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=78.99 E-value=4.8 Score=30.67 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
..|.-..+.|+|++|+.+| .+|++.|.+++...|+..
T Consensus 24 ~~Ave~D~~g~y~eAl~lY--------------~~aie~l~~alk~e~d~~ 60 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNY--------------KKAIEVLAQLVSLYRDGS 60 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHH--------------HHHHHHHHHHHHHSTTSS
T ss_pred HHHHHHHHhccHHHHHHHH--------------HHHHHHHHHHHHHCCCHH
Confidence 3445557899999999999 458999999999876643
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=74.68 E-value=7 Score=34.02 Aligned_cols=43 Identities=9% Similarity=-0.088 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
.|+++.|....+.. +....|..||...+..|+++-|+.||+++
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34556666655443 67899999999999999999999999986
No 248
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=72.96 E-value=15 Score=28.27 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
.+.|+.++.+|++ +...|+|++|+.+| .+|+..|.++++..|+..
T Consensus 12 l~~Ai~lv~~Ave--------------~D~~g~y~eAl~~Y--------------~~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 12 STAAVAVLKRAVE--------------LDAESRYQQALVCY--------------QEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHHHHHH--------------HHHTTCHHHHHHHH--------------HHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHH--------------HHHhCCHHHHHHHH--------------HHHHHHHHHHHHHCCCHH
Confidence 4566666666654 46789999999999 559999999999887644
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.87 E-value=17 Score=35.35 Aligned_cols=79 Identities=10% Similarity=-0.046 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCc-----CCcC--------------CCCCHHHHHHHHHHHHHhC---CCCH----HHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKP-----AVAD--------------GPRGVDSHLKAYERAQQML---KDLE----SEM 81 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p-----~~~d--------------~lg~~deAi~~yekAL~l~---Pd~~----~a~ 81 (338)
.||..|...|+|.+|...+.++.. ++.. .++++.++..+|.+|.... +-.+ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 889999999999999999988322 1111 2789999999999997765 1223 233
Q ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHc
Q 019586 82 MNKGGDRV-EQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 82 ~nLG~~l~-~lGr~~eAi~~yekALk 106 (338)
..-|..++ ..++|.+|..+|-.+++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 44577888 89999999999877763
No 250
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=70.53 E-value=1.2 Score=32.06 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=40.1
Q ss_pred hhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhcc
Q 019586 142 VLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAP 192 (338)
Q Consensus 142 ~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~ 192 (338)
.+.|....+++....+.+.+...+.+...|++.+. .++.|||+.+++..
T Consensus 4 ~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~--~~~~dP~v~~~~~~ 52 (62)
T 2lnm_A 4 VISKIMENPDVAMAFQNPRVQAALMECSENPMNIM--KYQNDKEVMDVFNK 52 (62)
T ss_dssp HHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHH--HHHhChHHHHHHHH
Confidence 34556666677777788889999999999999988 69999999988766
No 251
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.70 E-value=12 Score=29.50 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM 82 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~ 82 (338)
.++..+.+.|+|++||.+.++ |..++..|.++- ....++.
T Consensus 20 RrAe~ll~~gkydeAIech~k--------------Aa~yL~eAmklt-qs~qa~~ 59 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRK--------------ATTYLSEAMKLT-ESEQAHL 59 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHHTTC-CCHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHH--------------HHHHHHHHHHhh-ccHHHHH
Confidence 788889999999999999855 889999999987 5666554
No 252
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=69.58 E-value=13 Score=31.99 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
++.++|...|+.++.+...++..| ..|..-.++|++ ..|.+.+.+|+.+.|...+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl---------------------~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNV---------------------KKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccH---------------------HHHHHHHHHHhccCCCcHHH
Confidence 466777788888877777776666 777777777777 66667777788888765444
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.60 E-value=3.6 Score=40.03 Aligned_cols=80 Identities=16% Similarity=0.028 Sum_probs=60.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------------CCCCHHHHHHHHHHHHHhC---CCCH---HHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVAD----------------GPRGVDSHLKAYERAQQML---KDLE---SEMMNKG 85 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------------~lg~~deAi~~yekAL~l~---Pd~~---~a~~nLG 85 (338)
.+|..|...|++++|.+.|.++...... ..++|..+...+.++-.+. +++. ......|
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 8999999999999999999994332111 1679999999999987653 3322 2334568
Q ss_pred HHHHHCCCHHHHHHHHHHHHcc
Q 019586 86 GDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 86 ~~l~~lGr~~eAi~~yekALkl 107 (338)
.++...++|.+|..+|-.++.-
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhcc
Confidence 8889999999999999887654
No 254
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=68.38 E-value=16 Score=29.43 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
++.|+.++.+|+ -.-..|+|++|+.+| .+|+.+|.++++..+....
T Consensus 15 l~kAi~lv~~Av--------------e~D~ag~y~eAl~lY--------------~~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 15 LQKAIDLASKAA--------------QEDKAGNYEEALQLY--------------QHAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHH--------------HHHHHTCHHHHHHHH--------------HHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHH--------------HHHHccCHHHHHHHH--------------HHHHHHHHHHHHhccCCHH
Confidence 456666666665 345779999999999 4599999999998865554
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.24 E-value=15 Score=35.86 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCc----CCcC---------------CCCCHHHHHHHHHHHHH---hCCCCH----HHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKP----AVAD---------------GPRGVDSHLKAYERAQQ---MLKDLE----SEM 81 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p----~~~d---------------~lg~~deAi~~yekAL~---l~Pd~~----~a~ 81 (338)
.|+.+|...|+|.+|...+..+.- .... ..+++..|...++++.. -.+..+ ..+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 789999999999999999988421 1111 26799999999988742 223333 445
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
...|..+...++|.+|-.+|..++..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66888999999999999999988754
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.70 E-value=29 Score=33.69 Aligned_cols=81 Identities=9% Similarity=0.083 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------CCCCHHHHHHHHHHHHHhCC----CCHH--HH
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVKPAVAD-------------------GPRGVDSHLKAYERAQQMLK----DLES--EM 81 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------------~lg~~deAi~~yekAL~l~P----d~~~--a~ 81 (338)
+.||..|...|++++-..++....|-... ..+..+.=+.....+++-.- -+.. .-
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999886654433 24455555666666665321 1222 22
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
..||..|+..|+|.+|...+.+.++-
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~ 128 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRE 128 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 37999999999999999998877664
No 257
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=64.02 E-value=17 Score=27.23 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
.+.|+.+..+|+ -....|+|++|+.+| .+|+..|.++++..++..
T Consensus 10 l~~A~~l~~~Av--------------~~D~~g~y~eAl~~Y--------------~~aie~l~~a~k~e~~~~ 54 (85)
T 2v6x_A 10 LTKGIELVQKAI--------------DLDTATQYEEAYTAY--------------YNGLDYLMLALKYEKNPK 54 (85)
T ss_dssp HHHHHHHHHHHH--------------HHHHTTCHHHHHHHH--------------HHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHH--------------HHHHcCCHHHHHHHH--------------HHHHHHHHHHHHhCCCHH
Confidence 355666666654 446789999999999 458999999998887643
No 258
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=62.32 E-value=73 Score=28.23 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHH--h---------------CCCCHHHH--HHHHHHHHcCCHHHHHHHHHh---hCcCCcC-----
Q 019586 3 QNNYIEAEDAYRRALS--I---------------APDNNKMC--NLGICLMKQGRIGEAKETLRR---VKPAVAD----- 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALe--l---------------dPd~a~a~--nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----- 55 (338)
.++|..|+...+..|+ + +|.+-+.+ .+|.++...|..+|||.+|.. ..+.++.
T Consensus 75 lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 75 KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence 5789999999999993 2 24455544 899999999999999999987 2222211
Q ss_pred ------C---------CC--CHHH-----HH--------HHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHH
Q 019586 56 ------G---------PR--GVDS-----HL--------KAYERAQQMLKDLESEM-MNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 56 ------~---------lg--~~de-----Ai--------~~yekAL~l~Pd~~~a~-~nLG~~l~~lGr~~eAi~~yekA 104 (338)
. .| ..++ .. ...++--..-|..+..+ .+.+..|+.+|-.++...+|...
T Consensus 155 yeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~l 234 (242)
T 3kae_A 155 LENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELV 234 (242)
T ss_dssp HTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 0 11 1110 00 11222222335544444 34567899999999999999999
Q ss_pred HccCCC
Q 019586 105 WQPQPC 110 (338)
Q Consensus 105 Lkl~P~ 110 (338)
.+.+|.
T Consensus 235 R~kDP~ 240 (242)
T 3kae_A 235 RRKDPM 240 (242)
T ss_dssp HHHSTT
T ss_pred HhcCCC
Confidence 888885
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.85 E-value=28 Score=32.80 Aligned_cols=27 Identities=11% Similarity=-0.114 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 76 DLESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 76 d~~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
.++..|..+|..|.+.|++.+|..||-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 478899999999999999999999985
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.39 E-value=21 Score=34.07 Aligned_cols=28 Identities=14% Similarity=-0.175 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 75 KDLESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 75 Pd~~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
-.+++.|..+|..|.+.|++.+|..+|-
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3477899999999999999999999983
No 261
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=59.16 E-value=16 Score=27.82 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
..|.-+...|+|++|+.+| .+|+..|..++...|+..
T Consensus 21 ~~Ave~D~~g~y~eAl~lY--------------~~Aie~ll~alk~e~d~~ 57 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCY--------------QEGIDLLLQVLKGTKDNT 57 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHH--------------HHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHH--------------HHHHHHHHHHHhhCCCHH
Confidence 4555557899999999999 559999999999887644
No 262
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=57.73 E-value=10 Score=29.87 Aligned_cols=28 Identities=4% Similarity=-0.016 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
-.+..++..+...|+|++||.|.+++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456788999999999999999988753
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.73 E-value=64 Score=34.60 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=60.7
Q ss_pred HHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC--CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019586 16 ALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD--GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 92 (338)
Q Consensus 16 ALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d--~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG 92 (338)
.+..-|.++. .|-+|.+|...|++++|..+|+++...... .....++....+--..+...-....|.....++...+
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~ 911 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 911 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcC
Confidence 3344566655 559999999999999999999994432211 1222222111111111222223356777888999999
Q ss_pred CHHHHHHHHHHHHccCCC
Q 019586 93 RLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 93 r~~eAi~~yekALkl~P~ 110 (338)
-++-++...+.|++.-..
T Consensus 912 a~~~vi~fA~lAI~~~~~ 929 (950)
T 4gq2_M 912 AYIDALEFSLLADASKET 929 (950)
T ss_dssp CHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHhhccc
Confidence 999999999999975443
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.05 E-value=1.1e+02 Score=33.42 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=56.9
Q ss_pred HhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC---CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 019586 18 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD---GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR 93 (338)
Q Consensus 18 eldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d---~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr 93 (338)
..-|.++. .|-+|.+|...|++++|..+|+++...... ....... ..............+..|+....++.+.|.
T Consensus 836 ~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~ 914 (1139)
T 4fhn_B 836 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESA 914 (1139)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSC
T ss_pred hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc-cccccccccccccHHHHHHHHHHHHHHcCC
Confidence 34455555 459999999999999999999994321111 1111111 111111111222344566667777778888
Q ss_pred HHHHHHHHHHHHccCCCCc
Q 019586 94 LFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 94 ~~eAi~~yekALkl~P~~~ 112 (338)
++.++...+.|++..+.+.
T Consensus 915 ~~~vi~fa~lAi~~~~~~~ 933 (1139)
T 4fhn_B 915 YIDALEFSLLADASKETDD 933 (1139)
T ss_dssp CHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 8888888888887665443
No 265
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=49.76 E-value=93 Score=34.39 Aligned_cols=46 Identities=11% Similarity=-0.075 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHcCCHHHHHHHHHh
Q 019586 3 QNNYIEAEDAYRRALS-----IAPDNNKMCNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 3 ~g~~eeAi~~y~kALe-----ldPd~a~a~nLG~~y~~~G~~dEAi~~~~k 48 (338)
.|+.++|...|...-+ ..|+-..+..|-..|.+.|++++|...|++
T Consensus 140 ~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~e 190 (1134)
T 3spa_A 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190 (1134)
T ss_dssp HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3555566655544321 234333333455555556666555555555
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=47.18 E-value=22 Score=26.46 Aligned_cols=32 Identities=6% Similarity=-0.053 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
..+|..+...|++++|..||-+|+..-|+=..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45899999999999999999999999887544
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.65 E-value=76 Score=32.51 Aligned_cols=50 Identities=12% Similarity=-0.100 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.++++.|..+|++.-.-....+...|-+|.++..+|+.++|..+|+++.+
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 35666666666554333334677889999999999999999999999876
No 268
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.42 E-value=29 Score=28.22 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd 76 (338)
+.|..+-..|+-++|+.+|++ .+..++++|.+..+
T Consensus 27 s~AL~~DE~g~k~~Al~lYk~--------------GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 27 NKGLNTDELGQKEEAKNYYKQ--------------GIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH--------------HHHHHHHHHSSCCC
T ss_pred HHHhhhhhcCCHHHHHHHHHH--------------HHHHHHHhcccccc
Confidence 555555567999999999966 67777777777653
No 269
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.34 E-value=32 Score=25.85 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=12.4
Q ss_pred HHCCCHHHHHHHHHHHHc
Q 019586 89 VEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 89 ~~lGr~~eAi~~yekALk 106 (338)
=..|+|.+|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 466777777777776654
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.33 E-value=31 Score=34.91 Aligned_cols=55 Identities=11% Similarity=-0.070 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDL-------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~-------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+.+++|.....++. .|.. ...+|.+|.++..+++|.+|..++..|+...|.+..
T Consensus 244 ~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 244 NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 568899999999885 3432 355788999999999999999999999999887643
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=41.61 E-value=29 Score=30.28 Aligned_cols=35 Identities=11% Similarity=-0.139 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
...+|.+|.+++.+++|.+|..++..|+..-|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 35678899999999999999999999999988654
No 272
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=38.32 E-value=37 Score=25.77 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=16.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHc
Q 019586 86 GDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 86 ~~l~~lGr~~eAi~~yekALk 106 (338)
.-+-..|+|++|+.+|..+++
T Consensus 24 ve~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 24 VELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 334677888999988888764
No 273
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=35.65 E-value=2.1e+02 Score=24.42 Aligned_cols=103 Identities=12% Similarity=-0.123 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHhCCC---CHHHHHHHH---------HH---------HHcCCHHHHHHHHHhhCcCC--cC-----
Q 019586 4 NNYIEAEDAYRRALSIAPD---NNKMCNLGI---------CL---------MKQGRIGEAKETLRRVKPAV--AD----- 55 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd---~a~a~nLG~---------~y---------~~~G~~dEAi~~~~k~~p~~--~d----- 55 (338)
|..++.++...+-+.-.+- ++-.||+-. ++ ...|++..-+.+|-+..... .+
T Consensus 21 G~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ALd~ 100 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKALDI 100 (172)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHHHH
Confidence 6667777777776665442 111222211 11 23344555566665533221 11
Q ss_pred --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.+|+-++-.+.+...+.-.+-.++.++.+|.+|.+.|+..+|-..+.+|-+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 266777766777765555566799999999999999999999998888753
No 274
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=28.95 E-value=34 Score=26.77 Aligned_cols=32 Identities=6% Similarity=-0.053 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
..+|..+...|+++.|+.||-+|+..-|.=..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45899999999999999999999998776444
No 275
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.38 E-value=70 Score=24.02 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=14.3
Q ss_pred HHHHCCCHHHHHHHHHHHHc
Q 019586 87 DRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 87 ~l~~lGr~~eAi~~yekALk 106 (338)
-.=..|+|.+|+.+|..+++
T Consensus 28 e~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 28 KADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 34567888888888877764
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.15 E-value=56 Score=35.08 Aligned_cols=37 Identities=8% Similarity=-0.143 Sum_probs=31.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
+.+..-|.++..-|.+|.+|+..|++++|..+|++|-
T Consensus 831 eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 831 QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3445668888778899999999999999999999874
No 277
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=27.06 E-value=1.1e+02 Score=29.54 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 60 VDSHLKAYERAQQMLKDL--------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~--------~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
++.-+..++.|+.+.|.. ..++..++.+|+.+|+|++|+.+.++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 566778888888887642 366788999999999999999999998853
No 278
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.80 E-value=1.6e+02 Score=28.77 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 60 VDSHLKAYERAQQMLKDL-----------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~-----------~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
++.-+..++.|+.+.|.. ..++..|+.+|+.+|+|++|+.+.++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455677788888877642 357788999999999999999999999864
No 279
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.66 E-value=98 Score=30.28 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 63 HLKAYERAQQML-----KDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 63 Ai~~yekAL~l~-----Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
++..|.+||... -.+.--|..+|..+++.+++.+|+.+|..+-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 778888888753 4455678889999999999999999997763
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.91 E-value=1.9e+02 Score=27.59 Aligned_cols=73 Identities=18% Similarity=0.093 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHHHhC--CCCH-HHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------CCC
Q 019586 2 QQNNYIEAEDAYRRALSIA--PDNN-KMC-NLGICLMKQGRIGEAKETLRRVKP---AVAD----------------GPR 58 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld--Pd~a-~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------------~lg 58 (338)
+.|++++|.++|.++...- +.+- +.+ +.-.++...++|..+..++.++.. ...+ ..+
T Consensus 143 ~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r 222 (429)
T 4b4t_R 143 QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVR 222 (429)
T ss_dssp HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTS
T ss_pred HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 4689999999999988763 3332 244 777788889999999999999321 1111 267
Q ss_pred CHHHHHHHHHHHHHhC
Q 019586 59 GVDSHLKAYERAQQML 74 (338)
Q Consensus 59 ~~deAi~~yekAL~l~ 74 (338)
+|.+|...|-.++.--
T Consensus 223 ~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 223 NFKEAAKLLVDSLATF 238 (429)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhccC
Confidence 9999999998887653
No 281
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.07 E-value=1.3e+02 Score=29.17 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 60 VDSHLKAYERAQQMLKDL--------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~--------~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
++.-+..++.|+.+.|.. ..++..++.+|+.+|+|++|+.+.++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 456678888888877642 36778899999999999999999999875
No 282
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.76 E-value=1.1e+02 Score=30.48 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 63 HLKAYERAQQML-----KDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 63 Ai~~yekAL~l~-----Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
++..|.+||... -.+.--|..+|..|++.+++.+|+.+|..+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 778888888753 4455678889999999999999999997763
No 283
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.84 E-value=1.3e+02 Score=29.12 Aligned_cols=48 Identities=6% Similarity=-0.011 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 60 VDSHLKAYERAQQMLKDL--------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~--------~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
++.-+..++.|+.+.|.. ..++..++.+|+.+|+|++|+.+.++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 566678888888877642 367788999999999999999999999864
No 284
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.80 E-value=93 Score=33.92 Aligned_cols=36 Identities=8% Similarity=-0.161 Sum_probs=31.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 345568888888999999999999999999999874
No 285
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.65 E-value=1.1e+02 Score=22.56 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=14.3
Q ss_pred HHHCCCHHHHHHHHHHHHc
Q 019586 88 RVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 88 l~~lGr~~eAi~~yekALk 106 (338)
.-..|+|++|+.+|..+++
T Consensus 23 ~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 23 LDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3466888888888888765
No 286
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.56 E-value=73 Score=23.89 Aligned_cols=26 Identities=4% Similarity=-0.065 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
...+|.-|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45688889999999999999998875
No 287
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.40 E-value=62 Score=26.24 Aligned_cols=45 Identities=2% Similarity=-0.175 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
.+++|..+..+||.++-. |.-...+..|.+++.+++++|.+...-
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~ 62 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKE 62 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccC
Confidence 356677777777776531 111122222334445555666666543
No 288
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=20.11 E-value=5.5e+02 Score=24.15 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=48.6
Q ss_pred CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHH----HHHHHHHHhCCCCHHHHHHHHH-HHHHCCCHH
Q 019586 22 DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL----KAYERAQQMLKDLESEMMNKGG-DRVEQSRLF 95 (338)
Q Consensus 22 d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi----~~yekAL~l~Pd~~~a~~nLG~-~l~~lGr~~ 95 (338)
.+++.+ -+|..|.+.+++.+|..+|-. |.-+.|. -.++=..+-.|.....+...+. -|+..++..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~il---------g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~ 204 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVL---------GTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVR 204 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTT---------SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHh---------cCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHH
Confidence 456677 999999999999999999843 2112211 1111111223445555555555 588999999
Q ss_pred HHHHHHHHHHc
Q 019586 96 DAFLGSSSIWQ 106 (338)
Q Consensus 96 eAi~~yekALk 106 (338)
.|..+|...++
T Consensus 205 ~A~~~~~~f~~ 215 (336)
T 3lpz_A 205 AANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887766554
Done!