BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019587
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 31/143 (21%)
Query: 165 AQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGSQPTAMLRLPCYCCA 224
A + G ++CP C K+F+R +++ H H G +P Y C
Sbjct: 13 AALEPGEKPYACPECGKSFSRSDHLAEHQRTHT-----------GEKP--------YKC- 52
Query: 225 PGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEK-NCGKL 283
P C K D + L H + G KP+ C +C K+F+ R + R H++ + G+
Sbjct: 53 PEC--------GKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 284 WYC--TCGSDFKHKRSLKDHIKA 304
Y CG F L+ H +
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRT 127
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 23/149 (15%)
Query: 169 IGPTQFSCPLCFKTFNRYNNMQMHMWGH-GSQYRKGPE---------SLRGSQPTAMLRL 218
G + CP C K+F+ ++ H H G + K PE +LR Q T
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 219 PCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEK 278
P C P C K L+ H + G KP+ C +C K+F+ + TH++
Sbjct: 105 PYAC--PEC--------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Query: 279 --NCGKLWYC-TCGSDFKHKRSLKDHIKA 304
K + C CG F + +L H +
Sbjct: 155 THTGEKPYKCPECGKSFSRRDALNVHQRT 183
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 237 KPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDW----RTHEKNCGKLWYC-TCGSD 291
K +D L H G KP+ C C F + R+H+ + GK + C +CG
Sbjct: 15 KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKG 74
Query: 292 FKHKRSLKDHIKAFGNGHAS 311
F L HIK +G +S
Sbjct: 75 FSRPDHLNGHIKQVHSGPSS 94
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 254 GIKPFMCRKCSKAFAVRGDWRTHEK 278
G KP+ C++C K+F+ RG HE+
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHER 31
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 255 IKPFMCRKCSKAFAVRGDWRTHE 277
+KP+MC +C KAF+V TH+
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQ 32
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 245 LQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEK--NCGKLWYC-TCGSDFKHKRSLKDH 301
LQ H + G KP+ C +C K+F+ D + H++ K + C CG F L H
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Query: 302 IKAFGN 307
+ N
Sbjct: 80 QRTHQN 85
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 34/109 (31%)
Query: 174 FSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGSQPTAMLRLPCYCCAPGCRNNIDH 233
+ CP C K+F++ +N+Q H H G +P Y C P C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHT-----------GEKP--------YKC-PEC------ 38
Query: 234 PRSKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGD-----WRTHE 277
K LQ H + G KP+ C +C K+F+ R D RTH+
Sbjct: 39 --GKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFS-RSDHLSRHQRTHQ 84
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 245 LQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKN 279
L+ H +R G+KPF C+ C + F+ +TH +
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 245 LQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHE-KNC----GKLWYCT-CGSDFKHKRSL 298
L+ H ++ G KPF C KC K + + + HE +NC +++ C+ C F+ + L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 299 KDHI 302
+ H+
Sbjct: 83 RLHM 86
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 219 PCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRK--CSKAFAVRGDWRTH 276
P C GCR K L+TH + G KP+MC CSKAF+ D H
Sbjct: 67 PHKCTFEGCR--------KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Query: 277 EKNC---GKLWYCT---CGSDFKHKRSLKDHIKAF 305
+ K + C C + SL+ H+K
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDF|B Chain B, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDI|A Chain A, Carnitine Acetyltransferase In Complex With Coa
pdb|1NDI|B Chain B, Carnitine Acetyltransferase In Complex With Coa
Length = 596
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 149 GGGCSLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLR 208
GGG N G W Q ++ SC + ++ + + H +Y K PE +R
Sbjct: 282 GGGSKFNSGNRWFDKTLQFIVA-EDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVR 340
Query: 209 GSQ-PTAMLRLPCYCCAPGCRNNIDHPR 235
P M + + P +N+I+ +
Sbjct: 341 SPMVPLPMPKKLRFNITPEIKNDIEKAK 368
>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
pdb|2H3W|B Chain B, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
Length = 599
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 149 GGGCSLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLR 208
GGG N G W Q ++ SC + ++ + + H +Y K PE +R
Sbjct: 285 GGGSKFNSGNRWFDKTLQFIVA-EDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVR 343
Query: 209 GSQ-PTAMLRLPCYCCAPGCRNNIDHPR 235
P M + + P +N+I+ +
Sbjct: 344 SPMVPLPMPKKLRFNITPEIKNDIEKAK 371
>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3P|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3U|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
pdb|2H3U|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
Length = 599
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 149 GGGCSLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLR 208
GGG N G W Q ++ SC + ++ + + H +Y K PE +R
Sbjct: 285 GGGSKFNSGNRWFDKTLQFIVA-EDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVR 343
Query: 209 GSQ-PTAMLRLPCYCCAPGCRNNIDHPR 235
P M + + P +N+I+ +
Sbjct: 344 SPMVPLPMPKKLRFNITPEIKNDIEKAK 371
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 257 PFMCRKCSKAFAVRGDWRTHEKNC 280
P++C +C K+F RG H+++C
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSC 34
>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
pdb|1T7Q|B Chain B, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
Length = 618
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 149 GGGCSLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLR 208
GGG N G W Q ++ SC + ++ + + H +Y K PE +R
Sbjct: 303 GGGSKFNSGNRWFDKTLQFIVA-EDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVR 361
Query: 209 GSQ-PTAMLRLPCYCCAPGCRNNIDHPR 235
P M + + P +N+I+ +
Sbjct: 362 SPMVPLPMPKKLRFNITPEIKNDIEKAK 389
>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat
pdb|1T7O|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine
Length = 618
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 149 GGGCSLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLR 208
GGG N G W Q ++ SC + ++ + + H +Y K PE +R
Sbjct: 303 GGGSKFNSGNRWFDKTLQFIVA-EDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVR 361
Query: 209 GSQ-PTAMLRLPCYCCAPGCRNNIDHPR 235
P M + + P +N+I+ +
Sbjct: 362 SPMVPLPMPKKLRFNITPEIKNDIEKAK 389
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 256 KPFMCRKCSKAFAVRGDWRTHE 277
KP+ C +C KAF+VR TH+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQ 32
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 170 GPTQFSCPLCFKTFNRYNNMQMHMWGH-GSQYRKGPES 206
G +SCP+C F R + M H+ H GS + GP S
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
>pdb|3EOL|A Chain A, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
pdb|3EOL|B Chain B, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
Length = 433
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 20/108 (18%)
Query: 212 PTAMLRLPCYCCAPGCRNNIDHPRSKPLKDF---RTLQTHYKRKHGIKPFMCR------- 261
PT ++ A ++ID R +P D+ RT + Y+ K+GI+P + R
Sbjct: 220 PTLIVARTDAEAAKLLTSDIDE-RDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPY 278
Query: 262 ---------KCSKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKD 300
K A A R H+ + GKL C F K++L D
Sbjct: 279 CDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDD 326
>pdb|3E5B|A Chain A, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|B Chain B, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|C Chain C, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|D Chain D, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3OQ8|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3P0X|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
Length = 433
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 20/108 (18%)
Query: 212 PTAMLRLPCYCCAPGCRNNIDHPRSKPLKDF---RTLQTHYKRKHGIKPFMCR------- 261
PT ++ A ++ID R +P D+ RT + Y+ K+GI+P + R
Sbjct: 220 PTLIVARTDAEAAKLLTSDIDE-RDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPY 278
Query: 262 ---------KCSKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKD 300
K A A R H+ + GKL C F K++L D
Sbjct: 279 CDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDD 326
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 245 LQTHYKRKHGIKPFMCRKCSKAFA 268
L HY++ G +PF C+KC +AF+
Sbjct: 54 LTRHYRKHTGHRPFQCQKCDRAFS 77
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 245 LQTHYKRKHGIKPFMCRKCSKAFA 268
L HY++ G +PF C+KC +AF+
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFS 76
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 254 GIKPFMCRKCSKAFAVRGDWRTHEK 278
G KP++C +C KAF ++ HE+
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHER 31
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 256 KPFMCRKCSKAFAVRGDWRTHEK 278
KP++C +C KAF +R + H+K
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQK 33
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 237 KPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLW 284
K K L H K GIKP+ C C+K F R + H +C K +
Sbjct: 45 KKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSY 92
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 237 KPLKDFRTLQTHYKRKHGIK----PFMCRKCSKAFAVRGDWRTHEKNC 280
K + + L H+KR H F+C KC K F R H NC
Sbjct: 23 KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 174 FSCPLCFKTFNRYNNMQMHM 193
+ CP CFK F R +NM H+
Sbjct: 41 YPCPFCFKEFTRKDNMTAHV 60
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 254 GIKPFMCRKCSKAFAVRGDWRTHEK 278
G KP++C +C KAF + + THE+
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHER 31
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 256 KPFMCRKCSKAFAVRGDWRTHEK 278
KPF C C K+F +G+ TH++
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQR 33
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 245 LQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKN 279
L TH + G KPF C C + FA R D R ++
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFA-RSDERKRHRD 52
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 256 KPFMCRKCSKAFAVRGDWRTHEK--NCGKLWYC-TCGSDFKHKRSLKDHIK 303
KP+ C +C +F +G+ +H+ K + C CG+ F +LK H +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 256 KPFMCRKCSKAFAVRGDWRTHEK 278
KPF C +C K+F++ TH++
Sbjct: 11 KPFECAECGKSFSISSQLATHQR 33
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 256 KPFMCRKCSKAFAVRGDWRTHE 277
KP+ C +C KAF R + TH+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQ 32
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 256 KPFMCRKCSKAFAVRGDWRTHEK 278
KP+ C +C KAF R + TH+K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQK 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,270,513
Number of Sequences: 62578
Number of extensions: 392853
Number of successful extensions: 1101
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 144
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)