BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019589
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 58.2 bits (139), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
DYY +LG+ +A+ ++IKKAYY K HPD + DDP+ + E Y VLSD V+R
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 131 VYD 133
YD
Sbjct: 68 QYD 70
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCM-FINEVYAVLSDPVQR 129
+YY VLG+ A+PE IKKAY HPD + D+ E ++E Y VLSD +R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 130 MVYD 133
+YD
Sbjct: 70 SLYD 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128
+ Y VLGL +AT + IKK+Y HPD + D+PE + IN +A+L+D +
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75
Query: 129 RMVYDEIHGYSLIATNPF 146
R +YD+ L F
Sbjct: 76 RNIYDKYGSLGLYVAEQF 93
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 72 YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131
YY VLG+ PDA+ ++KKAY HPD +P+ I++ Y VLSD +R +
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGAEQFKQISQAYEVLSDEKKRQI 66
Query: 132 YDE 134
YD+
Sbjct: 67 YDQ 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 72 YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131
YY VLG+ P+AT E++KKAY HPD + ++ E I++ Y VLSD +R +
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFK---QISQAYEVLSDAKKREL 64
Query: 132 YDE 134
YD+
Sbjct: 65 YDK 67
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
DYY +LG+ A+ E +KKAY HPD P T I YAVLS+P +R
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPD-KNHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 131 VYDE 134
YD+
Sbjct: 67 QYDQ 70
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
DYY +LG+ A +I+KAY HPD + D E I E Y VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 131 VYDE 134
YD+
Sbjct: 64 AYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
DYY +LG+ A +I+KAY HPD + D E I E Y VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 131 VYDE 134
YD+
Sbjct: 64 AYDQ 67
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
DYYA++G+ P + IK AY + HPD+S +P+ + E + VLSD +R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 131 VYDEI 135
YD++
Sbjct: 65 EYDQM 69
>pdb|1FXR|A Chain A, Crystal Structure Of The Ferredoxin I From Desulfovibrio
Africanus At 2.3 Angstroms Resolution
pdb|1FXR|B Chain B, Crystal Structure Of The Ferredoxin I From Desulfovibrio
Africanus At 2.3 Angstroms Resolution
pdb|1DAX|A Chain A, Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr,
Minimized Average Structure
pdb|1DFD|A Chain A, Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr, 19
Structures
Length = 64
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 157 FVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGIN-EFVQQAIESCPVDCIH 211
+VD+ CI C++C +AP F ++ + +A V + G + E V++A+++CPV CIH
Sbjct: 5 YVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIH 60
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 44.7 bits (104), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
DYY +LG+ A +I+KAY HPD + D E I E Y VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 131 VYDE 134
YD+
Sbjct: 64 AYDQ 67
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
DYY LGL A+ E+IK+AY HPD +P I E Y VLSDP +R
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPD-KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 131 VYD 133
++D
Sbjct: 63 IFD 65
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
DYYA+LG+ P + IK AY + HPD+S ++ F + E + VL D +R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKD-LAEAWEVLKDEQRRA 87
Query: 131 VYDEI 135
YD++
Sbjct: 88 EYDQL 92
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF-INEVYAVLSDPVQR 129
DYY VL + A+ E IKKAY HPD + ++ E + E Y VLSD +R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 130 MVYD 133
+YD
Sbjct: 70 DIYD 73
>pdb|1DWL|A Chain A, The Ferredoxin-Cytochrome Complex Using Heteronuclear Nmr
And Docking Simulation
Length = 59
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212
+ +D CIGC++C + PEVF + + +A V E Q AI++CPV+ I +
Sbjct: 2 IVIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAISK 58
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 73 YAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132
Y +LG+ P A +++KK Y HPD D E I+E + +L+DP +R +Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFK---EISEAFEILNDPQKREIY 67
Query: 133 DE 134
D+
Sbjct: 68 DQ 69
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
++Y++LG+ A+ +I++A+ HPD + ++P + IN Y VL D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 131 VYDE 134
YD+
Sbjct: 63 KYDK 66
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 64 STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVL 123
S A+ D Y VLG+ A+ IKKAY + HPD DP + + I++ Y +L
Sbjct: 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPD-KNKDPGAEDRFIQISKAYEIL 69
Query: 124 SDPVQRMVYD 133
S+ +R YD
Sbjct: 70 SNEEKRTNYD 79
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
++Y++LG+ A+ +I++A+ HPD + ++P + IN Y VL D R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 131 VYDE 134
YD+
Sbjct: 82 KYDK 85
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 72 YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131
YY +LG+ A+ QIKKA++ HPD P+ I E Y LSD +R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPD-KNKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 132 YDEI 135
YD +
Sbjct: 68 YDTL 71
>pdb|1F2G|A Chain A, The Nmr Solution Structure Of The 3fe Ferredoxin Ii From
Desulfovibrio Gigas, 15 Structures
Length = 58
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 163 CIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213
C+ C+ C + P+VF++ E+ +A V N + V++AI+SCP + I R+
Sbjct: 8 CMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS 58
>pdb|1ROF|A Chain A, Nmr Study Of 4fe-4s Ferredoxin Of Thermatoga Maritima
pdb|1VJW|A Chain A, Structure Of Oxidoreductase (Nadp+(A),Ferredoxin(A))
Length = 60
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211
V VD +CIGC C N+ P+VF++ +D G+A+V + A +SCP I
Sbjct: 2 KVRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAIS 57
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 27/61 (44%)
Query: 73 YAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132
Y +LG+ AT QIK AYY HPD + E I++ Y VL R Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 133 D 133
D
Sbjct: 80 D 80
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 72 YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE-TTNFCMFINEVYAVLSDPVQRM 130
YY +L + A+ + IKKAY HPD + D+ E + E Y VLSD +R
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 131 VYD 133
+YD
Sbjct: 64 IYD 66
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPD-LSGDDPETTNFCMFINEVYA--VLSDPV 127
DYY +LG+ +A ++I KAY HPD ++ + FI+ A VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 128 QRMVYDE 134
R +D+
Sbjct: 443 XRKKFDD 449
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPD-LSGDDPETTNFCMFINEVYA--VLSDPV 127
DYY +LG+ +A ++I KAY HPD ++ + FI+ A VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 128 QRMVYDE 134
R +D+
Sbjct: 443 MRKKFDD 449
>pdb|1FXD|A Chain A, Refined Crystal Structure Of Ferredoxin Ii From
Desulfovibrio Gigas At 1.7 Angstroms
Length = 58
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 163 CIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213
C+ + C + P+VF++ E+ +A V N + V++AI+SCP + I R+
Sbjct: 8 CMAXEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS 58
>pdb|2Z8Q|A Chain A, Ferredoxin From Pyrococcus Furiosus, D14c Variant
pdb|2Z8Q|B Chain B, Ferredoxin From Pyrococcus Furiosus, D14c Variant
pdb|3PNI|A Chain A, Crystal Structure Of D14c [3fe-4s] Pyrococcus Furiosus
Ferredoxin
pdb|3PNI|B Chain B, Crystal Structure Of D14c [3fe-4s] Pyrococcus Furiosus
Ferredoxin
pdb|4DHV|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Ferredoxin
D14c Variant Containing The Heterometallic [agfe3s4]
Cluster
pdb|4DHV|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Ferredoxin
D14c Variant Containing The Heterometallic [agfe3s4]
Cluster
Length = 66
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRAR----VYNQCGINEFVQQAIESCPVDCI 210
V VD+ +CIGC C ++ P+VF++ D G+A+ V + ++A+E+CPV I
Sbjct: 3 KVSVDQDTCIGCAICASLCPDVFEM-NDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAI 61
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 62 SASTDAI-------ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCM 114
S+ DAI +DYY +LG ++ EQI + CHPD ++P+
Sbjct: 5 SSGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQ 64
Query: 115 FINEVYAVLSDPVQRMVYD 133
+ + +L++ R YD
Sbjct: 65 KLQKAKEILTNEESRARYD 83
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 76 LGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSDPVQRMVY 132
+G+ TPEQ+KK Y + HPD + P M +N+ ++ + Q+ +Y
Sbjct: 55 VGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 114
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 63 ASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPD-LSGDDPE-TTNFCMF----I 116
A + D+Y++LG P A +K+ Y + HPD S D P T CM I
Sbjct: 9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68
Query: 117 NEVYAVLSDPVQRMVYD 133
++ + +L + + YD
Sbjct: 69 DQAWKILGNEETKKKYD 85
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 73 YAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125
+ +G+ TPEQ+KK Y + HPD + P M E+ S+
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSE 172
>pdb|1SIZ|A Chain A, Crystal Structure Of The [fe3s4]-Ferredoxin From The
Hyperthermophilic Archaeon Pyrococcus Furiosus
pdb|1SIZ|C Chain C, Crystal Structure Of The [fe3s4]-Ferredoxin From The
Hyperthermophilic Archaeon Pyrococcus Furiosus
pdb|1SJ1|A Chain A, The 1.5 A Resolution Crystal Structure Of [fe3s4]-
Ferredoxin From The Hyperthermophilic Archaeon
Pyrococcus Furiosus
pdb|1SJ1|B Chain B, The 1.5 A Resolution Crystal Structure Of [fe3s4]-
Ferredoxin From The Hyperthermophilic Archaeon
Pyrococcus Furiosus
Length = 66
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRAR----VYNQCGINEFVQQAIESCPVDCI 210
V VD+ +CIG C ++ P+VF++ D G+A+ V + ++A+E+CPV I
Sbjct: 3 KVSVDQDTCIGDAICASLCPDVFEM-NDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAI 61
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD------PETTNFCMFINEVYAVLS 124
D+Y++LG P A +K+ Y + HPD D E + I++ + +L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 125 DPVQRMVYD 133
+ + YD
Sbjct: 71 NEETKREYD 79
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 83 TPEQIKKAYYNCMKACHPDLSGDDP 107
TPEQ+KK Y + HPD + P
Sbjct: 49 TPEQVKKVYRKAVLVVHPDKATGQP 73
>pdb|3EXY|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin V13g Variant
From Allochromatium Vinosum
Length = 82
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 163 CIGCKNCNNVAP--------EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214
CI C C P E + IE + +C + Q +E CPVDCI +
Sbjct: 8 CINCDGCEPECPNGAISQGDETYVIE-----PSLCTECVGHYETSQCVEVCPVDCIIKDP 62
Query: 215 AQQLSLLEDEMR-RVERVA 232
+ + + EDE+R + ER+
Sbjct: 63 SHEET--EDELRAKYERIT 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,317,562
Number of Sequences: 62578
Number of extensions: 293136
Number of successful extensions: 721
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 41
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)