Query 019589
Match_columns 338
No_of_seqs 471 out of 2825
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:58:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0716 Molecular chaperone (D 99.9 3.7E-24 8E-29 197.2 4.2 95 66-160 27-121 (279)
2 COG0484 DnaJ DnaJ-class molecu 99.9 1.9E-23 4.1E-28 202.6 7.7 70 68-137 2-71 (371)
3 KOG0713 Molecular chaperone (D 99.9 2.9E-22 6.2E-27 190.1 8.2 73 66-138 12-84 (336)
4 PRK14288 chaperone protein Dna 99.8 9.3E-20 2E-24 179.3 7.3 69 69-137 2-70 (369)
5 PRK14296 chaperone protein Dna 99.8 3.9E-19 8.5E-24 175.1 7.4 68 69-137 3-70 (372)
6 PRK14279 chaperone protein Dna 99.8 5E-19 1.1E-23 175.4 7.3 68 69-136 8-75 (392)
7 KOG0712 Molecular chaperone (D 99.8 7.1E-19 1.5E-23 168.7 7.3 67 69-138 3-69 (337)
8 PRK14286 chaperone protein Dna 99.8 1E-18 2.2E-23 172.2 7.5 69 69-137 3-71 (372)
9 PTZ00037 DnaJ_C chaperone prot 99.7 3.1E-18 6.7E-23 170.9 7.6 65 69-137 27-91 (421)
10 PRK14282 chaperone protein Dna 99.7 3.2E-18 7E-23 168.5 7.5 69 69-137 3-72 (369)
11 PRK14287 chaperone protein Dna 99.7 4.3E-18 9.3E-23 167.7 7.5 68 69-137 3-70 (371)
12 PRK14285 chaperone protein Dna 99.7 3.9E-18 8.5E-23 167.6 7.1 68 70-137 3-70 (365)
13 PF00226 DnaJ: DnaJ domain; I 99.7 5.4E-18 1.2E-22 125.7 5.7 63 71-133 1-64 (64)
14 PRK14294 chaperone protein Dna 99.7 6.1E-18 1.3E-22 166.4 7.6 68 69-136 3-70 (366)
15 PRK14277 chaperone protein Dna 99.7 6.1E-18 1.3E-22 167.4 7.6 68 69-136 4-71 (386)
16 PRK14297 chaperone protein Dna 99.7 5.9E-18 1.3E-22 167.2 7.4 69 69-137 3-71 (380)
17 PRK14301 chaperone protein Dna 99.7 7.2E-18 1.6E-22 166.2 7.4 69 69-137 3-71 (373)
18 PRK14299 chaperone protein Dna 99.7 8.3E-18 1.8E-22 160.6 7.4 68 69-137 3-70 (291)
19 PRK14276 chaperone protein Dna 99.7 8.2E-18 1.8E-22 166.2 7.1 68 69-137 3-70 (380)
20 PRK14298 chaperone protein Dna 99.7 8.1E-18 1.8E-22 166.0 6.9 67 69-136 4-70 (377)
21 PRK14284 chaperone protein Dna 99.7 9.4E-18 2E-22 166.4 7.3 68 70-137 1-68 (391)
22 PRK14283 chaperone protein Dna 99.7 9.9E-18 2.2E-22 165.5 7.2 67 69-136 4-70 (378)
23 KOG0717 Molecular chaperone (D 99.7 6.3E-18 1.4E-22 165.4 5.6 111 68-178 6-121 (508)
24 PRK14295 chaperone protein Dna 99.7 1.1E-17 2.4E-22 165.7 7.3 66 69-134 8-73 (389)
25 PRK14291 chaperone protein Dna 99.7 1.1E-17 2.4E-22 165.4 7.2 68 69-137 2-69 (382)
26 PRK14278 chaperone protein Dna 99.7 1.1E-17 2.4E-22 165.2 7.2 66 70-136 3-68 (378)
27 KOG0691 Molecular chaperone (D 99.7 1.5E-17 3.2E-22 157.9 7.1 71 69-139 4-74 (296)
28 PRK14280 chaperone protein Dna 99.7 1.5E-17 3.2E-22 164.2 7.1 68 69-137 3-70 (376)
29 PRK14281 chaperone protein Dna 99.7 1.5E-17 3.4E-22 165.1 7.2 68 70-137 3-70 (397)
30 PRK10767 chaperone protein Dna 99.7 1.8E-17 3.9E-22 163.3 7.5 68 69-136 3-70 (371)
31 PRK14289 chaperone protein Dna 99.7 6.1E-17 1.3E-21 160.4 7.5 68 69-136 4-71 (386)
32 PRK14290 chaperone protein Dna 99.7 6.1E-17 1.3E-21 159.2 7.2 68 70-137 3-71 (365)
33 TIGR02349 DnaJ_bact chaperone 99.7 9.4E-17 2E-21 157.3 6.8 66 71-137 1-66 (354)
34 PRK14300 chaperone protein Dna 99.7 9.6E-17 2.1E-21 158.2 6.8 67 70-137 3-69 (372)
35 KOG0715 Molecular chaperone (D 99.7 1.1E-16 2.3E-21 152.6 6.6 68 70-138 43-110 (288)
36 PRK14292 chaperone protein Dna 99.7 1.3E-16 2.9E-21 157.2 6.9 66 70-136 2-67 (371)
37 PRK10266 curved DNA-binding pr 99.6 1.5E-16 3.2E-21 153.0 6.9 66 70-136 4-69 (306)
38 PRK14293 chaperone protein Dna 99.6 1.7E-16 3.7E-21 156.6 7.0 68 69-137 2-69 (374)
39 smart00271 DnaJ DnaJ molecular 99.6 4.4E-16 9.5E-21 113.7 6.1 58 70-127 1-59 (60)
40 KOG0718 Molecular chaperone (D 99.6 2.8E-16 6E-21 154.1 6.5 72 68-139 7-81 (546)
41 KOG0719 Molecular chaperone (D 99.6 3.2E-16 7E-21 141.9 5.1 72 68-139 12-85 (264)
42 PTZ00341 Ring-infected erythro 99.6 6.2E-16 1.3E-20 163.1 7.5 70 68-138 571-640 (1136)
43 cd06257 DnaJ DnaJ domain or J- 99.6 1.2E-15 2.6E-20 109.3 6.5 55 71-125 1-55 (55)
44 PHA03102 Small T antigen; Revi 99.6 2.1E-15 4.4E-20 130.7 5.1 67 69-139 4-72 (153)
45 KOG0721 Molecular chaperone (D 99.5 7.5E-15 1.6E-19 131.9 6.8 73 65-137 94-166 (230)
46 COG2214 CbpA DnaJ-class molecu 99.5 9.7E-15 2.1E-19 130.5 6.9 68 68-135 4-72 (237)
47 TIGR03835 termin_org_DnaJ term 99.5 1.9E-14 4.1E-19 149.0 8.0 67 70-137 2-68 (871)
48 PRK05014 hscB co-chaperone Hsc 99.5 7.9E-14 1.7E-18 123.5 7.1 66 70-135 1-73 (171)
49 PRK01356 hscB co-chaperone Hsc 99.4 1.7E-13 3.7E-18 120.7 7.0 66 70-135 2-72 (166)
50 PRK03578 hscB co-chaperone Hsc 99.4 2.4E-13 5.2E-18 120.9 7.6 68 68-135 4-78 (176)
51 PRK00294 hscB co-chaperone Hsc 99.4 2.9E-13 6.3E-18 120.0 7.6 68 68-135 2-76 (173)
52 KOG0624 dsRNA-activated protei 99.4 7.9E-13 1.7E-17 126.5 8.2 68 68-135 392-462 (504)
53 KOG0720 Molecular chaperone (D 99.3 1.5E-12 3.2E-17 128.1 5.9 67 68-135 233-299 (490)
54 PTZ00100 DnaJ chaperone protei 99.3 3.6E-12 7.8E-17 105.3 5.7 53 68-124 63-115 (116)
55 KOG0722 Molecular chaperone (D 99.3 1.4E-12 3E-17 119.7 3.2 66 69-135 32-97 (329)
56 PRK06991 ferredoxin; Provision 99.3 5.4E-12 1.2E-16 119.2 5.9 146 152-323 76-225 (270)
57 KOG0550 Molecular chaperone (D 99.2 6.6E-12 1.4E-16 122.4 5.5 68 68-135 371-439 (486)
58 COG5269 ZUO1 Ribosome-associat 99.2 9.1E-12 2E-16 115.3 5.2 123 65-204 38-165 (379)
59 KOG0714 Molecular chaperone (D 99.2 8.9E-12 1.9E-16 116.5 4.7 69 69-137 2-71 (306)
60 COG1141 Fer Ferredoxin [Energy 99.2 8E-12 1.7E-16 93.7 3.4 59 155-214 2-68 (68)
61 PRK09430 djlA Dna-J like membr 99.2 1.8E-11 3.9E-16 115.8 5.6 60 67-126 197-263 (267)
62 PF13370 Fer4_13: 4Fe-4S singl 99.2 8.5E-12 1.8E-16 91.2 1.6 55 158-212 1-58 (58)
63 PF13459 Fer4_15: 4Fe-4S singl 99.1 2.2E-11 4.9E-16 90.8 3.1 56 156-212 1-65 (65)
64 PRK01773 hscB co-chaperone Hsc 99.1 9.5E-11 2.1E-15 103.9 7.2 65 70-134 2-73 (173)
65 PHA02624 large T antigen; Prov 99.1 4.2E-11 9.2E-16 123.0 5.6 60 69-132 10-71 (647)
66 COG5407 SEC63 Preprotein trans 99.0 4.4E-10 9.5E-15 110.5 4.7 69 68-136 96-169 (610)
67 TIGR00714 hscB Fe-S protein as 98.9 2.2E-09 4.8E-14 93.9 6.5 55 81-135 2-61 (157)
68 KOG1150 Predicted molecular ch 98.8 5.5E-09 1.2E-13 93.1 6.2 67 67-133 50-117 (250)
69 KOG0568 Molecular chaperone (D 98.7 1.8E-09 4E-14 98.1 0.3 99 1-126 4-103 (342)
70 KOG1789 Endocytosis protein RM 98.3 9.5E-07 2.1E-11 94.4 5.3 56 67-125 1278-1337(2235)
71 KOG0723 Molecular chaperone (D 98.2 3.3E-06 7.2E-11 68.2 5.3 63 60-126 46-108 (112)
72 PF06902 Fer4_19: Divergent 4F 97.9 1.9E-05 4.1E-10 58.9 4.2 58 154-214 6-63 (64)
73 COG2878 Predicted NADH:ubiquin 97.8 1E-05 2.2E-10 71.5 1.9 46 149-226 103-148 (198)
74 KOG3192 Mitochondrial J-type c 97.4 0.00018 3.9E-09 62.2 4.1 67 68-134 6-79 (168)
75 PF14697 Fer4_21: 4Fe-4S diclu 97.3 9.8E-05 2.1E-09 54.1 1.3 53 157-212 2-59 (59)
76 PRK05035 electron transport co 97.1 0.00043 9.3E-09 73.7 4.5 96 159-269 368-471 (695)
77 COG1143 NuoI Formate hydrogenl 97.0 0.00023 5E-09 63.2 0.8 68 151-218 45-120 (172)
78 COG1146 Ferredoxin [Energy pro 96.9 0.00078 1.7E-08 50.4 2.8 59 156-215 3-63 (68)
79 PF00037 Fer4: 4Fe-4S binding 96.8 0.00051 1.1E-08 41.1 0.9 23 157-211 2-24 (24)
80 PRK09626 oorD 2-oxoglutarate-a 96.8 0.00058 1.3E-08 55.4 1.4 65 154-218 9-78 (103)
81 PRK08348 NADH-plastoquinone ox 96.8 0.0011 2.4E-08 55.2 3.0 62 152-215 33-95 (120)
82 PF12837 Fer4_6: 4Fe-4S bindin 96.7 0.00039 8.6E-09 41.7 -0.2 14 156-169 2-15 (24)
83 PF13187 Fer4_9: 4Fe-4S diclus 96.5 0.00063 1.4E-08 48.3 -0.2 49 162-210 1-55 (55)
84 CHL00065 psaC photosystem I su 96.5 0.0011 2.3E-08 51.3 1.1 60 156-215 4-68 (81)
85 COG1076 DjlA DnaJ-domain-conta 96.4 0.0023 5E-08 56.8 2.7 64 71-134 2-72 (174)
86 KOG3256 NADH:ubiquinone oxidor 96.3 0.0019 4.1E-08 56.5 1.6 77 137-213 87-170 (212)
87 PLN00071 photosystem I subunit 96.2 0.0021 4.5E-08 49.6 1.5 60 156-215 4-68 (81)
88 COG1076 DjlA DnaJ-domain-conta 96.2 0.0028 6.1E-08 56.3 2.4 54 70-123 113-173 (174)
89 COG1144 Pyruvate:ferredoxin ox 96.2 0.0028 6.1E-08 50.1 2.1 55 155-215 29-88 (91)
90 COG1142 HycB Fe-S-cluster-cont 96.2 0.00058 1.3E-08 60.1 -2.0 64 153-217 74-143 (165)
91 TIGR00403 ndhI NADH-plastoquin 96.2 0.0038 8.2E-08 56.0 3.1 69 151-219 52-128 (183)
92 TIGR03048 PS_I_psaC photosyste 96.2 0.0027 5.8E-08 48.9 1.8 59 155-213 2-65 (80)
93 PRK08222 hydrogenase 4 subunit 96.2 0.0018 3.9E-08 58.0 0.9 72 149-220 26-100 (181)
94 PRK12387 formate hydrogenlyase 96.1 0.0026 5.6E-08 56.7 1.7 71 151-221 28-101 (180)
95 PRK02651 photosystem I subunit 96.0 0.0042 9.1E-08 47.7 2.2 57 157-213 5-66 (81)
96 TIGR02936 fdxN_nitrog ferredox 96.0 0.0029 6.4E-08 49.6 1.1 62 152-213 12-90 (91)
97 PRK09623 vorD 2-ketoisovalerat 95.7 0.0051 1.1E-07 50.1 1.6 58 155-215 45-103 (105)
98 PRK05888 NADH dehydrogenase su 95.6 0.007 1.5E-07 53.1 2.2 63 155-217 47-121 (164)
99 TIGR02060 aprB adenosine phosp 95.6 0.011 2.4E-07 50.3 3.4 65 156-221 3-73 (132)
100 PF13247 Fer4_11: 4Fe-4S diclu 95.6 0.0027 5.9E-08 51.3 -0.4 62 153-214 32-97 (98)
101 PRK13984 putative oxidoreducta 95.6 0.011 2.5E-07 61.9 4.0 61 155-215 39-108 (604)
102 TIGR01971 NuoI NADH-quinone ox 95.5 0.0048 1E-07 51.2 0.7 59 161-219 43-108 (122)
103 CHL00014 ndhI NADH dehydrogena 95.3 0.013 2.7E-07 51.8 2.8 68 153-220 51-126 (167)
104 KOG0431 Auxilin-like protein a 95.3 0.02 4.4E-07 58.2 4.4 43 80-122 398-447 (453)
105 PRK07569 bidirectional hydroge 95.2 0.051 1.1E-06 50.4 6.7 62 154-215 139-212 (234)
106 PRK09898 hypothetical protein; 95.1 0.017 3.8E-07 52.6 3.3 59 155-219 148-207 (208)
107 PRK08318 dihydropyrimidine deh 95.1 0.014 3E-07 58.7 2.7 61 154-215 335-400 (420)
108 PRK09625 porD pyruvate flavodo 95.0 0.018 3.8E-07 49.0 2.5 59 155-215 53-111 (133)
109 PRK05113 electron transport co 94.9 0.02 4.3E-07 51.7 2.8 59 154-215 107-166 (191)
110 PF03656 Pam16: Pam16; InterP 94.9 0.05 1.1E-06 46.0 5.0 58 67-128 55-112 (127)
111 PRK06991 ferredoxin; Provision 94.8 0.034 7.3E-07 52.9 4.3 21 156-176 110-130 (270)
112 COG0437 HybA Fe-S-cluster-cont 94.8 0.0099 2.1E-07 54.1 0.5 66 153-220 92-163 (203)
113 PRK09477 napH quinol dehydroge 94.5 0.03 6.5E-07 53.2 3.1 57 158-214 205-263 (271)
114 PRK00783 DNA-directed RNA poly 94.4 0.048 1E-06 51.5 4.4 94 155-263 164-258 (263)
115 TIGR03224 benzo_boxA benzoyl-C 94.4 0.024 5.2E-07 57.0 2.3 54 155-212 4-58 (411)
116 PRK09624 porD pyuvate ferredox 94.3 0.015 3.2E-07 47.5 0.5 55 157-214 47-102 (105)
117 PF12797 Fer4_2: 4Fe-4S bindin 94.2 0.018 4E-07 33.7 0.6 16 156-171 3-18 (22)
118 COG3592 Uncharacterized conser 94.2 0.048 1E-06 40.8 2.9 55 155-213 17-72 (74)
119 COG1245 Predicted ATPase, RNas 94.0 0.021 4.6E-07 57.8 1.1 36 157-226 46-81 (591)
120 TIGR02179 PorD_KorD 2-oxoacid: 94.0 0.024 5.2E-07 43.1 1.1 57 155-214 19-76 (78)
121 TIGR01582 FDH-beta formate deh 93.8 0.017 3.7E-07 55.3 0.0 66 155-220 118-187 (283)
122 TIGR01944 rnfB electron transp 93.8 0.043 9.2E-07 48.3 2.5 57 154-213 106-163 (165)
123 TIGR02163 napH_ ferredoxin-typ 93.6 0.045 9.7E-07 51.5 2.4 54 159-213 199-254 (255)
124 TIGR00402 napF ferredoxin-type 93.5 0.02 4.4E-07 46.2 -0.0 57 158-215 31-88 (101)
125 COG1145 NapF Ferredoxin [Energ 93.5 0.048 1E-06 42.7 2.0 59 157-215 25-85 (99)
126 TIGR02700 flavo_MJ0208 archaeo 93.4 0.028 6.2E-07 52.2 0.8 64 156-223 143-207 (234)
127 PTZ00305 NADH:ubiquinone oxido 93.3 0.012 2.7E-07 56.2 -1.9 71 155-225 206-285 (297)
128 PRK14028 pyruvate ferredoxin o 93.2 0.038 8.2E-07 53.4 1.3 60 155-214 241-310 (312)
129 PRK13409 putative ATPase RIL; 93.2 0.042 9E-07 57.8 1.6 31 153-215 41-71 (590)
130 PRK08764 ferredoxin; Provision 92.7 0.064 1.4E-06 45.6 1.8 54 156-212 80-134 (135)
131 PRK10194 ferredoxin-type prote 92.6 0.035 7.5E-07 48.6 0.1 57 159-215 32-88 (163)
132 PRK06273 ferredoxin; Provision 92.5 0.024 5.1E-07 50.1 -1.2 57 156-213 44-111 (165)
133 PF13237 Fer4_10: 4Fe-4S diclu 92.4 0.039 8.4E-07 38.6 0.1 20 156-175 2-21 (52)
134 TIGR02494 PFLE_PFLC glycyl-rad 92.3 0.04 8.7E-07 52.4 0.1 61 153-214 40-103 (295)
135 cd07030 RNAP_D D subunit of Ar 92.2 0.13 2.9E-06 48.3 3.5 87 160-260 168-255 (259)
136 PRK10330 formate dehydrogenase 91.9 0.058 1.3E-06 47.9 0.6 69 155-223 81-165 (181)
137 PRK12769 putative oxidoreducta 91.5 0.063 1.4E-06 57.0 0.5 64 155-218 79-150 (654)
138 PRK10882 hydrogenase 2 protein 91.5 0.11 2.4E-06 50.8 2.1 61 154-215 136-207 (328)
139 TIGR03149 cyt_nit_nrfC cytochr 91.3 0.12 2.5E-06 47.9 2.0 61 155-216 119-185 (225)
140 COG3383 Uncharacterized anaero 91.1 0.12 2.6E-06 55.1 2.1 112 85-211 82-210 (978)
141 TIGR03149 cyt_nit_nrfC cytochr 91.1 0.059 1.3E-06 49.8 -0.2 61 154-214 39-115 (225)
142 TIGR02512 Fe_only_hydrog hydro 91.0 0.072 1.6E-06 52.9 0.2 58 156-213 2-70 (374)
143 PF12798 Fer4_3: 4Fe-4S bindin 90.9 0.087 1.9E-06 28.0 0.4 8 202-209 8-15 (15)
144 TIGR02951 DMSO_dmsB DMSO reduc 90.9 0.11 2.3E-06 45.3 1.2 59 155-215 89-153 (161)
145 PRK05035 electron transport co 90.6 0.42 9.1E-06 51.3 5.5 21 159-179 407-427 (695)
146 TIGR02745 ccoG_rdxA_fixG cytoc 90.4 0.18 3.9E-06 51.2 2.5 40 160-207 230-269 (434)
147 PF13484 Fer4_16: 4Fe-4S doubl 90.2 0.063 1.4E-06 39.5 -0.7 14 202-215 9-22 (67)
148 TIGR01973 NuoG NADH-quinone ox 90.0 0.21 4.7E-06 52.5 2.8 59 155-213 136-202 (603)
149 TIGR01660 narH nitrate reducta 90.0 0.28 6.1E-06 49.8 3.4 62 151-214 171-235 (492)
150 PRK10194 ferredoxin-type prote 89.9 0.18 4E-06 44.0 1.8 53 163-215 106-160 (163)
151 PRK14993 tetrathionate reducta 89.7 0.14 3.1E-06 47.9 1.0 19 156-174 125-143 (244)
152 PF12838 Fer4_7: 4Fe-4S diclus 89.6 0.12 2.5E-06 36.2 0.3 13 162-174 1-13 (52)
153 PRK07118 ferredoxin; Validated 89.3 0.2 4.3E-06 47.9 1.7 61 154-214 161-234 (280)
154 PRK12809 putative oxidoreducta 89.2 0.18 3.8E-06 53.6 1.4 66 155-222 79-146 (639)
155 PRK09476 napG quinol dehydroge 88.7 0.13 2.8E-06 48.5 0.0 54 161-214 59-120 (254)
156 PRK08493 NADH dehydrogenase su 88.5 0.15 3.3E-06 55.6 0.4 60 155-214 135-225 (819)
157 TIGR02912 sulfite_red_C sulfit 88.2 0.13 2.8E-06 49.9 -0.5 57 156-214 164-222 (314)
158 TIGR03478 DMSO_red_II_bet DMSO 88.0 0.23 5.1E-06 48.2 1.2 18 157-174 158-175 (321)
159 PRK09129 NADH dehydrogenase su 87.4 0.13 2.9E-06 55.7 -0.9 60 154-213 137-204 (776)
160 TIGR02176 pyruv_ox_red pyruvat 87.1 0.25 5.3E-06 56.1 0.9 60 157-216 679-764 (1165)
161 TIGR03287 methan_mark_16 putat 87.0 0.78 1.7E-05 45.9 4.3 56 154-215 295-352 (391)
162 COG2878 Predicted NADH:ubiquin 87.0 0.2 4.3E-06 44.8 0.1 31 153-215 137-167 (198)
163 PRK13029 2-oxoacid ferredoxin 86.8 0.4 8.7E-06 54.1 2.3 56 151-207 647-705 (1186)
164 TIGR03336 IOR_alpha indolepyru 86.6 0.46 1E-05 50.0 2.7 51 154-210 543-595 (595)
165 PRK08166 NADH dehydrogenase su 86.6 0.2 4.2E-06 55.0 -0.2 60 155-214 143-210 (847)
166 PRK07860 NADH dehydrogenase su 86.5 0.17 3.6E-06 55.2 -0.8 58 155-212 144-209 (797)
167 PRK07118 ferredoxin; Validated 85.9 0.52 1.1E-05 45.1 2.4 56 158-217 210-266 (280)
168 PRK09130 NADH dehydrogenase su 85.9 0.21 4.6E-06 53.5 -0.3 59 155-213 139-205 (687)
169 PRK13795 hypothetical protein; 85.2 0.36 7.8E-06 51.3 1.0 56 156-213 576-632 (636)
170 TIGR01660 narH nitrate reducta 84.9 0.2 4.3E-06 50.9 -1.0 55 155-212 208-269 (492)
171 PRK09193 indolepyruvate ferred 84.5 0.58 1.3E-05 52.8 2.2 55 152-207 634-691 (1165)
172 COG4231 Indolepyruvate ferredo 84.1 0.48 1E-05 49.7 1.3 58 155-215 571-630 (640)
173 PF12838 Fer4_7: 4Fe-4S diclus 83.5 0.67 1.4E-05 32.3 1.5 16 154-169 29-44 (52)
174 TIGR03294 FrhG coenzyme F420 h 83.4 0.42 9.1E-06 44.3 0.5 54 155-212 168-222 (228)
175 PRK13030 2-oxoacid ferredoxin 82.6 0.72 1.6E-05 52.1 2.0 55 152-207 620-677 (1159)
176 PRK12771 putative glutamate sy 82.6 0.83 1.8E-05 47.6 2.4 57 156-214 499-562 (564)
177 COG2221 DsrA Dissimilatory sul 82.5 0.43 9.4E-06 46.2 0.2 26 200-226 179-204 (317)
178 TIGR03478 DMSO_red_II_bet DMSO 81.6 1.6 3.5E-05 42.5 3.7 63 151-215 119-184 (321)
179 TIGR00397 mauM_napG MauM/NapG 81.1 0.91 2E-05 41.6 1.8 17 199-215 181-199 (213)
180 COG1148 HdrA Heterodisulfide r 80.7 0.74 1.6E-05 47.3 1.1 19 155-174 555-573 (622)
181 PRK09326 F420H2 dehydrogenase 80.2 0.71 1.5E-05 45.3 0.8 21 154-174 5-25 (341)
182 PF12800 Fer4_4: 4Fe-4S bindin 80.1 1.2 2.6E-05 24.3 1.4 14 161-174 2-15 (17)
183 PRK15449 ferredoxin-like prote 79.1 1 2.2E-05 36.2 1.3 21 153-173 53-73 (95)
184 COG1149 MinD superfamily P-loo 78.3 0.93 2E-05 43.2 0.9 58 155-214 63-120 (284)
185 PF14697 Fer4_21: 4Fe-4S diclu 78.1 1.7 3.6E-05 31.6 2.0 20 155-174 33-52 (59)
186 COG2768 Uncharacterized Fe-S c 78.0 1.2 2.6E-05 43.1 1.5 22 153-174 185-206 (354)
187 KOG0724 Zuotin and related mol 77.7 2.3 5E-05 41.3 3.5 55 81-135 3-61 (335)
188 COG1149 MinD superfamily P-loo 77.7 1 2.2E-05 42.9 1.0 30 197-226 73-102 (284)
189 PF13446 RPT: A repeated domai 77.6 3.6 7.9E-05 29.9 3.7 27 70-96 5-31 (62)
190 PRK10330 formate dehydrogenase 77.5 0.62 1.3E-05 41.3 -0.5 20 155-174 4-23 (181)
191 PRK09476 napG quinol dehydroge 77.0 1.3 2.8E-05 41.8 1.5 27 156-214 179-207 (254)
192 PF11833 DUF3353: Protein of u 76.4 4.9 0.00011 36.4 5.0 42 79-128 1-43 (194)
193 PF14687 DUF4460: Domain of un 76.0 5.7 0.00012 32.8 4.9 47 80-126 4-54 (112)
194 COG1034 NuoG NADH dehydrogenas 75.2 0.63 1.4E-05 49.8 -1.2 68 158-226 141-216 (693)
195 TIGR02066 dsrB sulfite reducta 74.5 1.4 3.1E-05 43.3 1.1 10 202-211 223-232 (341)
196 TIGR03315 Se_ygfK putative sel 73.0 1.6 3.5E-05 48.8 1.2 57 159-215 879-943 (1012)
197 COG0437 HybA Fe-S-cluster-cont 73.0 0.39 8.3E-06 43.9 -3.0 72 153-225 10-102 (203)
198 PRK12769 putative oxidoreducta 70.0 1.5 3.2E-05 46.7 0.0 53 160-215 53-107 (654)
199 KOG0063 RNAse L inhibitor, ABC 68.0 2.1 4.6E-05 43.5 0.7 28 156-215 45-72 (592)
200 PRK14993 tetrathionate reducta 67.8 4 8.6E-05 38.3 2.4 54 159-215 96-152 (244)
201 PRK09898 hypothetical protein; 65.9 3.5 7.5E-05 37.5 1.6 58 155-214 115-175 (208)
202 COG1142 HycB Fe-S-cluster-cont 64.5 3.5 7.6E-05 36.4 1.3 18 156-173 5-22 (165)
203 TIGR01582 FDH-beta formate deh 63.7 5.3 0.00012 38.3 2.5 56 157-215 87-146 (283)
204 COG2768 Uncharacterized Fe-S c 63.4 4.1 8.8E-05 39.5 1.6 20 154-173 214-233 (354)
205 PRK09853 putative selenate red 62.8 5.9 0.00013 44.5 2.9 68 156-226 881-959 (1019)
206 PRK12814 putative NADPH-depend 62.6 2.2 4.7E-05 45.5 -0.5 42 155-210 610-651 (652)
207 TIGR02486 RDH reductive dehalo 62.4 2.6 5.7E-05 41.0 0.1 15 202-216 214-228 (314)
208 COG1148 HdrA Heterodisulfide r 62.3 5.4 0.00012 41.2 2.3 59 157-216 221-294 (622)
209 PF13746 Fer4_18: 4Fe-4S diclu 61.9 3.5 7.5E-05 30.9 0.7 18 159-176 48-65 (69)
210 cd01916 ACS_1 Acetyl-CoA synth 60.3 8.6 0.00019 41.6 3.5 53 157-209 361-419 (731)
211 TIGR00276 iron-sulfur cluster 58.0 3.2 6.9E-05 39.8 -0.1 10 202-211 168-177 (282)
212 TIGR00314 cdhA CO dehydrogenas 57.5 5.5 0.00012 43.3 1.5 54 155-208 393-452 (784)
213 COG1144 Pyruvate:ferredoxin ox 57.4 4 8.6E-05 32.4 0.4 18 158-175 63-80 (91)
214 TIGR00273 iron-sulfur cluster- 56.0 7.8 0.00017 39.4 2.3 52 157-208 289-358 (432)
215 TIGR02951 DMSO_dmsB DMSO reduc 54.6 7.5 0.00016 33.7 1.7 57 157-215 58-117 (161)
216 COG4231 Indolepyruvate ferredo 51.9 6.1 0.00013 41.7 0.8 24 154-177 601-624 (640)
217 COG1146 Ferredoxin [Energy pro 51.7 6.4 0.00014 29.0 0.7 24 153-176 33-56 (68)
218 COG4656 RnfC Predicted NADH:ub 51.4 8.6 0.00019 39.8 1.7 15 162-176 366-380 (529)
219 KOG3256 NADH:ubiquinone oxidor 49.7 7.3 0.00016 34.5 0.8 22 155-176 144-165 (212)
220 COG1143 NuoI Formate hydrogenl 47.5 9.7 0.00021 33.9 1.2 22 155-176 89-110 (172)
221 TIGR00397 mauM_napG MauM/NapG 47.0 12 0.00026 34.2 1.9 14 156-169 126-144 (213)
222 TIGR02936 fdxN_nitrog ferredox 44.0 8.4 0.00018 29.8 0.3 19 157-175 66-84 (91)
223 TIGR00403 ndhI NADH-plastoquin 42.2 12 0.00025 33.5 0.9 27 157-183 98-125 (183)
224 PRK12809 putative oxidoreducta 41.9 16 0.00036 38.7 2.1 54 158-215 51-107 (639)
225 PRK00941 acetyl-CoA decarbonyl 39.8 11 0.00023 41.1 0.3 54 155-208 398-457 (781)
226 KOG3442 Uncharacterized conser 39.5 37 0.0008 28.7 3.4 57 68-128 57-113 (132)
227 PRK15449 ferredoxin-like prote 39.2 17 0.00036 29.2 1.3 29 197-225 35-63 (95)
228 PRK05888 NADH dehydrogenase su 36.6 20 0.00043 31.2 1.5 26 157-182 93-119 (164)
229 PRK10882 hydrogenase 2 protein 36.4 18 0.00039 35.5 1.3 54 159-214 108-164 (328)
230 TIGR01971 NuoI NADH-quinone ox 35.5 20 0.00042 29.3 1.2 26 157-182 78-104 (122)
231 PRK08348 NADH-plastoquinone ox 35.5 15 0.00032 30.3 0.4 27 156-182 68-95 (120)
232 COG1453 Predicted oxidoreducta 35.2 88 0.0019 31.3 5.8 81 85-178 281-368 (391)
233 COG1600 Uncharacterized Fe-S p 34.4 14 0.00031 36.3 0.2 14 202-215 194-207 (337)
234 COG1035 FrhB Coenzyme F420-red 34.2 29 0.00062 34.2 2.3 18 158-175 2-19 (332)
235 CHL00014 ndhI NADH dehydrogena 33.9 20 0.00044 31.4 1.1 27 156-182 94-121 (167)
236 TIGR02910 sulfite_red_A sulfit 32.7 23 0.0005 34.9 1.4 15 159-173 299-313 (334)
237 TIGR02176 pyruv_ox_red pyruvat 31.4 19 0.0004 41.3 0.5 21 156-176 734-754 (1165)
238 PRK09625 porD pyruvate flavodo 31.2 13 0.00029 31.4 -0.5 20 157-176 85-104 (133)
239 TIGR01945 rnfC electron transp 30.3 23 0.0005 36.0 0.9 19 158-176 360-378 (435)
240 PRK09853 putative selenate red 30.1 20 0.00043 40.5 0.4 21 156-176 921-941 (1019)
241 TIGR02912 sulfite_red_C sulfit 29.4 20 0.00044 34.6 0.3 22 155-176 195-216 (314)
242 PRK09624 porD pyuvate ferredox 29.1 21 0.00046 28.9 0.3 20 156-175 76-95 (105)
243 COG0479 FrdB Succinate dehydro 29.0 30 0.00065 32.4 1.4 13 162-174 143-155 (234)
244 PF07709 SRR: Seven Residue Re 28.8 51 0.0011 16.9 1.7 13 112-124 2-14 (14)
245 COG1941 FrhG Coenzyme F420-red 28.3 60 0.0013 30.5 3.2 27 73-101 131-157 (247)
246 COG2221 DsrA Dissimilatory sul 27.7 22 0.00048 34.6 0.3 17 158-174 169-185 (317)
247 COG3383 Uncharacterized anaero 27.1 31 0.00068 37.6 1.3 25 155-179 186-210 (978)
248 PRK06273 ferredoxin; Provision 26.6 32 0.00068 30.3 1.0 21 156-176 86-106 (165)
249 PRK08222 hydrogenase 4 subunit 26.3 38 0.00082 30.1 1.5 28 157-184 69-97 (181)
250 TIGR02064 dsrA sulfite reducta 26.2 16 0.00035 36.8 -1.0 30 197-226 246-275 (402)
251 PRK12387 formate hydrogenlyase 25.7 34 0.00074 30.2 1.1 26 157-182 69-95 (180)
252 PRK08318 dihydropyrimidine deh 25.3 24 0.00052 35.5 0.0 25 156-180 372-398 (420)
253 PRK13552 frdB fumarate reducta 25.1 28 0.00061 32.4 0.5 22 161-183 149-170 (239)
254 COG5552 Uncharacterized conser 24.9 2.2E+02 0.0048 21.9 5.1 33 71-103 4-36 (88)
255 PRK07570 succinate dehydrogena 24.9 35 0.00076 32.1 1.1 17 160-176 156-172 (250)
256 TIGR02064 dsrA sulfite reducta 24.8 42 0.00091 33.9 1.7 32 155-186 266-297 (402)
257 PRK14028 pyruvate ferredoxin o 24.4 33 0.00071 33.0 0.8 18 158-175 286-303 (312)
258 COG1139 Uncharacterized conser 23.0 27 0.00058 35.6 -0.1 24 160-183 307-330 (459)
259 KOG2282 NADH-ubiquinone oxidor 22.5 15 0.00032 38.2 -2.1 53 159-212 173-234 (708)
260 TIGR03294 FrhG coenzyme F420 h 22.2 21 0.00045 33.1 -1.0 27 156-182 198-224 (228)
261 TIGR02910 sulfite_red_A sulfit 22.2 44 0.00096 32.9 1.2 23 160-182 219-243 (334)
262 PRK09326 F420H2 dehydrogenase 22.1 45 0.00097 32.6 1.3 20 158-177 50-69 (341)
263 PF12434 Malate_DH: Malate deh 21.3 1.2E+02 0.0027 18.7 2.5 20 291-310 4-23 (28)
264 TIGR02494 PFLE_PFLC glycyl-rad 20.9 34 0.00074 32.3 0.1 22 155-176 76-97 (295)
265 PF13183 Fer4_8: 4Fe-4S diclus 20.1 16 0.00035 25.3 -1.7 16 160-175 2-17 (57)
No 1
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.7e-24 Score=197.21 Aligned_cols=95 Identities=44% Similarity=0.583 Sum_probs=85.1
Q ss_pred CCccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcccccccCCC
Q 019589 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNP 145 (338)
Q Consensus 66 ~~~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s~~~lnp 145 (338)
.....|+|+||||+++++.++|||+||+|+++||||+++++|++.++|++||+||+||+||.+|..||.+|+.+..-.+.
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~ 106 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQ 106 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999988887788
Q ss_pred CCCCCCCCCccccCc
Q 019589 146 FLDDSCPKDHVFVDE 160 (338)
Q Consensus 146 ~~~~~~p~~~v~vDe 160 (338)
+.++..+...+|.+.
T Consensus 107 fg~d~~~~~~v~~~~ 121 (279)
T KOG0716|consen 107 FGEDSKIIYFVFSSP 121 (279)
T ss_pred hcccCcceEEEecch
Confidence 777766666555543
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.9e-23 Score=202.56 Aligned_cols=70 Identities=44% Similarity=0.654 Sum_probs=66.9
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..+|||+||||+++||.+|||+|||+|+++||||+|+++++++++|++|++||+|||||++|+.||+||.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~ 71 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGH 71 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCc
Confidence 4679999999999999999999999999999999999879999999999999999999999999999853
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.9e-22 Score=190.13 Aligned_cols=73 Identities=37% Similarity=0.543 Sum_probs=69.1
Q ss_pred CCccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhccc
Q 019589 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (338)
Q Consensus 66 ~~~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~ 138 (338)
....+|||+||||+++|+..|||+|||+||++||||+|+++|.+.+.|+.|+.||+|||||.+|+.||.+|..
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 3456899999999999999999999999999999999999999999999999999999999999999998743
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=9.3e-20 Score=179.34 Aligned_cols=69 Identities=35% Similarity=0.520 Sum_probs=65.3
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.+|||+|||+|+++||||+++.+++++++|++|++||+||+||.+|..||++|.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 369999999999999999999999999999999998767899999999999999999999999999863
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.9e-19 Score=175.06 Aligned_cols=68 Identities=37% Similarity=0.579 Sum_probs=64.1
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.+|||+|||+|+++||||+|++ +.++++|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 4699999999999999999999999999999999975 7789999999999999999999999999763
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=5e-19 Score=175.43 Aligned_cols=68 Identities=40% Similarity=0.628 Sum_probs=65.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
..|||+||||+++||.+|||+|||+|+++||||+++++++++++|++|++||+||+||.+|+.||++|
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 47999999999999999999999999999999999877789999999999999999999999999985
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.1e-19 Score=168.67 Aligned_cols=67 Identities=39% Similarity=0.588 Sum_probs=63.6
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhccc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~ 138 (338)
...||+||||+++||.+|||+|||+|+++||||+|++ +.++|++|..||+|||||++|..||++|..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEE 69 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence 4689999999999999999999999999999999998 889999999999999999999999998643
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1e-18 Score=172.24 Aligned_cols=69 Identities=32% Similarity=0.525 Sum_probs=65.3
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 369999999999999999999999999999999998777899999999999999999999999999863
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.73 E-value=3.1e-18 Score=170.86 Aligned_cols=65 Identities=42% Similarity=0.600 Sum_probs=60.8
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.+|||+|||+|+++||||++++ .++|++|++||+||+||.+|..||.+|.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999853 4899999999999999999999999764
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.2e-18 Score=168.50 Aligned_cols=69 Identities=41% Similarity=0.638 Sum_probs=64.3
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.+|||+|||+|+++||||+++.+ .+++++|++|++||+||+||.+|..||+++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 46999999999999999999999999999999999764 6688999999999999999999999999763
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.3e-18 Score=167.70 Aligned_cols=68 Identities=34% Similarity=0.621 Sum_probs=64.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.+|||+|||+|+++||||+++. +++++.|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 4699999999999999999999999999999999975 7788999999999999999999999999863
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.9e-18 Score=167.62 Aligned_cols=68 Identities=35% Similarity=0.535 Sum_probs=64.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
.|||+||||+++||.+|||+|||+|+++||||+++++++++++|++|++||+||+||.+|..||+++.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 69999999999999999999999999999999998778889999999999999999999999999753
No 13
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.72 E-value=5.4e-18 Score=125.72 Aligned_cols=63 Identities=48% Similarity=0.712 Sum_probs=59.8
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-hHHHHHHHHHHHHHHcCChhHhhhhh
Q 019589 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYD 133 (338)
Q Consensus 71 d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~vLsdp~~R~~YD 133 (338)
|||+||||+++++.++||++|+++++++|||++.+.. .+.+.|..|++||++|+||.+|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988855 57899999999999999999999998
No 14
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.1e-18 Score=166.40 Aligned_cols=68 Identities=40% Similarity=0.633 Sum_probs=65.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|+.|++||+||+||.+|..||++|
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 47999999999999999999999999999999999877788999999999999999999999999986
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.1e-18 Score=167.45 Aligned_cols=68 Identities=46% Similarity=0.689 Sum_probs=64.9
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
..|||+||||+++||.+|||+|||+|+++||||+++++++++++|++|++||+||+||.+|..||.+|
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 36999999999999999999999999999999999877788999999999999999999999999976
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=5.9e-18 Score=167.24 Aligned_cols=69 Identities=39% Similarity=0.597 Sum_probs=65.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.++||+|||+|+++||||+++.++++++.|++|++||+||+||.+|..||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 369999999999999999999999999999999998777899999999999999999999999999753
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=7.2e-18 Score=166.22 Aligned_cols=69 Identities=39% Similarity=0.582 Sum_probs=65.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.++||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 469999999999999999999999999999999998777889999999999999999999999999753
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=8.3e-18 Score=160.64 Aligned_cols=68 Identities=40% Similarity=0.667 Sum_probs=64.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|..||.++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 4699999999999999999999999999999999975 7789999999999999999999999999764
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.2e-18 Score=166.23 Aligned_cols=68 Identities=37% Similarity=0.640 Sum_probs=64.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|..||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 3699999999999999999999999999999999986 6789999999999999999999999999763
No 20
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.1e-18 Score=166.03 Aligned_cols=67 Identities=43% Similarity=0.652 Sum_probs=63.5
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
..|||+||||+++||.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|..||++|
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 3699999999999999999999999999999999975 678899999999999999999999999976
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=9.4e-18 Score=166.38 Aligned_cols=68 Identities=40% Similarity=0.589 Sum_probs=64.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
.|||+||||+++||.+|||+|||+|+++||||++++++.++++|+.|++||+||+||.+|..||+++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 48999999999999999999999999999999998878899999999999999999999999999763
No 22
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=9.9e-18 Score=165.53 Aligned_cols=67 Identities=40% Similarity=0.593 Sum_probs=63.9
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
..|||+||||+++||.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|..||++|
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 4699999999999999999999999999999999985 778999999999999999999999999976
No 23
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.3e-18 Score=165.38 Aligned_cols=111 Identities=32% Similarity=0.407 Sum_probs=84.5
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hhHHHHHHHHHHHHHHcCChhHhhhhhhhcccccccCCCC
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPF 146 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s~~~lnp~ 146 (338)
..+.||+||||..+++..+||++||+||++||||+++.. .++++.|+.|+.||+|||||..|..||.+....+.+-++.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~s~ 85 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKNSD 85 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCCCc
Confidence 567899999999999999999999999999999997764 5789999999999999999999999999876555555555
Q ss_pred CCCCCCCCccccCcccccCCCC----ccCCCCccce
Q 019589 147 LDDSCPKDHVFVDEFSCIGCKN----CNNVAPEVFK 178 (338)
Q Consensus 147 ~~~~~p~~~v~vDe~~CiGCg~----C~~vap~vF~ 178 (338)
++...+.-+.|+.-...+|.+. ++.+..++|.
T Consensus 86 ~~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~ 121 (508)
T KOG0717|consen 86 TGVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFN 121 (508)
T ss_pred cccchHHHHHHhhhhhhcccccccchhHHHHHHHHH
Confidence 5544443344444444444432 3444455554
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.1e-17 Score=165.71 Aligned_cols=66 Identities=44% Similarity=0.638 Sum_probs=63.4
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhh
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDE 134 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 134 (338)
..|||+||||+++||.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|..||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999998767789999999999999999999999998
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.1e-17 Score=165.44 Aligned_cols=68 Identities=44% Similarity=0.723 Sum_probs=64.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.++||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||.++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999986 7788999999999999999999999999753
No 26
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.1e-17 Score=165.17 Aligned_cols=66 Identities=36% Similarity=0.554 Sum_probs=63.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
.|||+||||+++||.+|||+|||+|+++||||++++ ++++++|++|++||+||+||.+|..||++|
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 699999999999999999999999999999999985 778999999999999999999999999976
No 27
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-17 Score=157.91 Aligned_cols=71 Identities=38% Similarity=0.586 Sum_probs=68.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcccc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s 139 (338)
..|||+||||+.+++..+|++|||..+++||||+|+++|.+.+.|+.|.+||+||+|+..|..||.++...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999987543
No 28
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.5e-17 Score=164.21 Aligned_cols=68 Identities=38% Similarity=0.585 Sum_probs=63.9
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||+++||.++||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||++|.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 3699999999999999999999999999999999976 6789999999999999999999999999763
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.5e-17 Score=165.11 Aligned_cols=68 Identities=38% Similarity=0.569 Sum_probs=64.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
.|||+||||+++|+.++||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 69999999999999999999999999999999998777789999999999999999999999999753
No 30
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=163.34 Aligned_cols=68 Identities=41% Similarity=0.623 Sum_probs=64.6
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
..|||+||||+++||.+|||+|||+|+++||||++++++.+++.|++|++||++|+||.+|..||.++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 46999999999999999999999999999999999876778999999999999999999999999875
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=6.1e-17 Score=160.36 Aligned_cols=68 Identities=41% Similarity=0.562 Sum_probs=65.1
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
..|||+||||+++||.+|||+|||+|+++||||+++++++++++|++|++||+||+||.+|..||.++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G 71 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG 71 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 46999999999999999999999999999999999887889999999999999999999999999975
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=6.1e-17 Score=159.24 Aligned_cols=68 Identities=41% Similarity=0.621 Sum_probs=63.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-hHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
.|||+||||+++||.+|||+|||+|+++||||+++.+. ++.+.|+.|++||+||+||.+|..||.+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 69999999999999999999999999999999998654 688999999999999999999999999763
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.66 E-value=9.4e-17 Score=157.31 Aligned_cols=66 Identities=47% Similarity=0.695 Sum_probs=62.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 71 d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
|||+||||+++||.++||+|||+|+++||||+++. +.+++.|++|++||+||+|+.+|..||.++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 79999999999999999999999999999999973 6688999999999999999999999999753
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.6e-17 Score=158.23 Aligned_cols=67 Identities=34% Similarity=0.565 Sum_probs=63.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
.|||+||||+++||.+|||+|||+|+++||||+++. +.+++.|++|++||+||+|+.+|..||.+|.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 699999999999999999999999999999999874 6688999999999999999999999999763
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-16 Score=152.57 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=64.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhccc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~ 138 (338)
.|||+||||+++|+..|||+||++|+++||||.+.+ .++.+.|++|.+||+||+|+.+|..||.++..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 399999999999999999999999999999999998 58999999999999999999999999997643
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.3e-16 Score=157.19 Aligned_cols=66 Identities=38% Similarity=0.560 Sum_probs=63.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
.|||+||||+++||.++||+|||+|+++||||+++. +.+.++|+.|++||+||+||.+|+.||.+|
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 599999999999999999999999999999999985 678999999999999999999999999975
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.65 E-value=1.5e-16 Score=153.05 Aligned_cols=66 Identities=35% Similarity=0.632 Sum_probs=62.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
.|||+||||++++|.+|||+|||+|+++||||++.. +.+++.|++|++||++|+||.+|..||.++
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 699999999999999999999999999999999875 678999999999999999999999999875
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.7e-16 Score=156.58 Aligned_cols=68 Identities=38% Similarity=0.670 Sum_probs=63.7
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||+||||++++|.++||+|||+|+++||||+++. +.++++|++|++||+||+||.+|..||.++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 3699999999999999999999999999999999875 6688999999999999999999999999763
No 39
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.63 E-value=4.4e-16 Score=113.68 Aligned_cols=58 Identities=43% Similarity=0.622 Sum_probs=54.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-ChhHHHHHHHHHHHHHHcCChh
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-DPETTNFCMFINEVYAVLSDPV 127 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~-~~~a~~~f~~i~~Ay~vLsdp~ 127 (338)
.|||+||||+++++.++||++|+++++++|||++.+ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999985 4678899999999999999985
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.8e-16 Score=154.06 Aligned_cols=72 Identities=38% Similarity=0.493 Sum_probs=65.2
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC---hhHHHHHHHHHHHHHHcCChhHhhhhhhhcccc
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~---~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s 139 (338)
...|||.+|||+++||.+|||+|||++++.|||||..+. ..+++.|+.|.+|||||+||.+|+.||.+|...
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 456999999999999999999999999999999998752 348999999999999999999999999987543
No 41
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.2e-16 Score=141.85 Aligned_cols=72 Identities=38% Similarity=0.520 Sum_probs=65.8
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCC--CChhHHHHHHHHHHHHHHcCChhHhhhhhhhcccc
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSG--DDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~--~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s 139 (338)
...|+|+||||.++|+..+|++||++|++++|||++. ...++++.|+.|+.+|+||+|..+|+.||+.|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 3459999999999999999999999999999999994 44678999999999999999999999999987654
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.61 E-value=6.2e-16 Score=163.10 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=65.2
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhccc
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~ 138 (338)
...+||+||||+++||..+||+|||+|+++||||+++++ .+...|+.|++||+|||||.+|..||.+|..
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 457999999999999999999999999999999999874 6888999999999999999999999998653
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.61 E-value=1.2e-15 Score=109.29 Aligned_cols=55 Identities=53% Similarity=0.788 Sum_probs=51.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCC
Q 019589 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (338)
Q Consensus 71 d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsd 125 (338)
|||+||||+++++.++||++|++|++++|||++++...+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999998756688999999999999987
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.57 E-value=2.1e-15 Score=130.67 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=60.8
Q ss_pred cCCcccccCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcccc
Q 019589 69 ADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (338)
Q Consensus 69 ~~d~Y~vLgv~~~a--s~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s 139 (338)
...+|+||||+++| |.++||+|||++++++|||++++ ++.|+.||+||++|+|+.+|..||.+|...
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 34689999999999 99999999999999999999754 579999999999999999999999987543
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.5e-15 Score=131.88 Aligned_cols=73 Identities=29% Similarity=0.418 Sum_probs=66.5
Q ss_pred CCCccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 65 ~~~~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
......|+|+||||++++|..|||+|||+|+++|||||++...+.++.|..|++||+.|+|+..|..|..+|.
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 3446689999999999999999999999999999999998756678899999999999999999999998864
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=9.7e-15 Score=130.48 Aligned_cols=68 Identities=44% Similarity=0.671 Sum_probs=64.5
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChh-HHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE-TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~-a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
...+||+||||+++++..+|+++||+++++||||+++.++. +.+.|+.|++||++|+|+..|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45699999999999999999999999999999999998775 899999999999999999999999986
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.52 E-value=1.9e-14 Score=148.99 Aligned_cols=67 Identities=40% Similarity=0.615 Sum_probs=63.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
.|||+||||+++++.++||++||+|+++||||++++ +.+...|+.|++||++|+||.+|..||.++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 599999999999999999999999999999999887 7788899999999999999999999999753
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=7.9e-14 Score=123.46 Aligned_cols=66 Identities=24% Similarity=0.434 Sum_probs=58.4
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChh-----HHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 70 ~d~Y~vLgv~~~--as~~eIk~aYr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
.|||+||||++. ++..+|+++||+|++++|||+..+.+. +.+.|..||+||++|+||.+|..|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999996 688999999999999999999766432 456889999999999999999999864
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.7e-13 Score=120.72 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=57.6
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChh---HHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 70 ~d~Y~vLgv~~~--as~~eIk~aYr~l~~~~HPD~~~~~~~---a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
.|||+||||++. ++..+|+++|++|++++|||++.+..+ +...+..||+||+||+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999987 789999999999999999999875322 234578999999999999999999874
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=2.4e-13 Score=120.88 Aligned_cols=68 Identities=25% Similarity=0.425 Sum_probs=58.9
Q ss_pred ccCCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChhHH-----HHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPETT-----NFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~--as~~eIk~aYr~l~~~~HPD~~~~~~~a~-----~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
...|||+||||++. ++..+|+++|++|++++|||++.+.+..+ +.+..||+||++|+||.+|..|+..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 34799999999985 68899999999999999999987655443 3458999999999999999999963
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=2.9e-13 Score=119.97 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=60.4
Q ss_pred ccCCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChh-----HHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~--as~~eIk~aYr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
...|||++|||++. .+..+|+++||+|+++||||++.+.+. +.+.|..||+||+||+||.+|..|+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 45799999999987 668999999999999999999876543 456789999999999999999999974
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.39 E-value=7.9e-13 Score=126.51 Aligned_cols=68 Identities=32% Similarity=0.472 Sum_probs=62.8
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh---hHHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
..+|||+||||.++|+..||.+|||+++.+||||-..+.. .++.+|.-|..|-+||+||++|+.+|+.
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 4579999999999999999999999999999999988743 3788999999999999999999999973
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.5e-12 Score=128.08 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=64.0
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
...|+|.+|||+.++|.++||+.||+++...|||||-. +.+++.|+.|+.||++|+|+.+|..||..
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 46899999999999999999999999999999999995 88999999999999999999999999964
No 54
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.29 E-value=3.6e-12 Score=105.30 Aligned_cols=53 Identities=30% Similarity=0.435 Sum_probs=47.7
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcC
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLs 124 (338)
...++|+||||++++|.+|||++||+|++++|||+++ ..+.|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence 3469999999999999999999999999999999853 3568899999999985
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.4e-12 Score=119.71 Aligned_cols=66 Identities=35% Similarity=0.583 Sum_probs=62.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
..|.|+||||.++++..+|.+|||+|+++||||++.+ ++..+.|..|..||++|.|...|..||-.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 4699999999999999999999999999999999998 66779999999999999999999999954
No 56
>PRK06991 ferredoxin; Provisional
Probab=99.26 E-value=5.4e-12 Score=119.17 Aligned_cols=146 Identities=21% Similarity=0.306 Sum_probs=91.5
Q ss_pred CCCccccCcccccCCCCccCCCC-ccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhhHHHHHHHHH
Q 019589 152 PKDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVER 230 (338)
Q Consensus 152 p~~~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~~~~~ 230 (338)
+...+.+|+..|++|+.|+.+|| +.+.+... +... +. ......+..++..||++||.++...
T Consensus 76 ~~~~~~id~~~CigCg~Cv~aCP~~AI~~~~~-~~~~-v~-~~~CigCg~Cv~vCP~~AI~~~~~~-------------- 138 (270)
T PRK06991 76 PRAVAVIDEQLCIGCTLCMQACPVDAIVGAPK-QMHT-VL-ADLCTGCDLCVPPCPVDCIDMVPVT-------------- 138 (270)
T ss_pred ccceeEEccccCCCCcHHHHhCCHhheecccc-ccee-eC-HhhCCCchHHHhhCCcCCeEeecCc--------------
Confidence 34556789999999999999998 33444322 2111 11 2233456678999999999887441
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---hhccccCCcccccccccccCCCCCCCCchHHHHHHHHHHH
Q 019589 231 VAMMLSGMGSGSADVFRMASSRWERRQAKVLEQAKIR---MMNREKDSDKTVSYWSNIWGKPKDYRNSEEEVKERSKRAA 307 (338)
Q Consensus 231 ~~~~~~g~~~~~~~~~~~a~~~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 307 (338)
...++|+.|.....+.|++||+.|+.|+.++..++ ++++.+....... .....|........+++|+|+|+|
T Consensus 139 --~~~~~~~~~~~~~a~~ar~r~~~r~~Rl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~a~i~a 213 (270)
T PRK06991 139 --GERTGWDAWSQAQADAARARHDARQARLRREREAAEARAAARAAASAAAAA---AEASAAAAPAADDAEAKKRAIIAA 213 (270)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cccccccccccchhhhHHHHHHHH
Confidence 11356676778889999999999999987433332 2222221111100 000112333344555679999999
Q ss_pred HHHhhhHHHhhhcCCC
Q 019589 308 AAARRWREYSRRGADQ 323 (338)
Q Consensus 308 a~~r~~~~~~~~~~~~ 323 (338)
||+|+ +.++...
T Consensus 214 a~~ra----~~~~~~~ 225 (270)
T PRK06991 214 ALERA----RKKKEEL 225 (270)
T ss_pred HHHHH----HHhhhcc
Confidence 99999 8777554
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.6e-12 Score=122.44 Aligned_cols=68 Identities=32% Similarity=0.557 Sum_probs=64.3
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hhHHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
...|||.||||...++..+||++||++++.+|||++.+. .+++..|++|-+||.||+||.+|..||..
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 457999999999999999999999999999999999886 67899999999999999999999999974
No 58
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.1e-12 Score=115.27 Aligned_cols=123 Identities=27% Similarity=0.376 Sum_probs=94.4
Q ss_pred CCCccCCcccccCCCC---CCCHHHHHHHHHHHHHhcCCCCC--CCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcccc
Q 019589 65 TDAIADDYYAVLGLLP---DATPEQIKKAYYNCMKACHPDLS--GDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (338)
Q Consensus 65 ~~~~~~d~Y~vLgv~~---~as~~eIk~aYr~l~~~~HPD~~--~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s 139 (338)
..+...|+|.+|||+. -+++.+|.+++++.+.+||||+. +++.....+|+.|+.||+||+|+.+|.+||...
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d--- 114 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND--- 114 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc---
Confidence 3566789999999994 58899999999999999999996 333557899999999999999999999999852
Q ss_pred cccCCCCCCCCCCCCccccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHh
Q 019589 140 LIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIES 204 (338)
Q Consensus 140 ~~~lnp~~~~~~p~~~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~ 204 (338)
++...|...+..++.. ..++..+|+-+..|+...+++..|..+....-|+.
T Consensus 115 -------f~advppp~~~t~~~F-------fe~w~pvFe~earFSkKqPvPsLg~~dss~keVe~ 165 (379)
T COG5269 115 -------FDADVPPPRIYTPDEF-------FEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVEE 165 (379)
T ss_pred -------cccCCCCccCCCchhH-------HHHHHHHHHhhhhccccCCCCCCCCchhHHHHHHH
Confidence 2222222333333222 56677889999999999999998877655544544
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.9e-12 Score=116.55 Aligned_cols=69 Identities=38% Similarity=0.563 Sum_probs=62.5
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hhHHHHHHHHHHHHHHcCChhHhhhhhhhcc
Q 019589 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (338)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G 137 (338)
..|||.||||.++++.++|++||+++++++|||+++.. ..+...|++|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999998774 2455589999999999999999999999875
No 60
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=99.21 E-value=8e-12 Score=93.74 Aligned_cols=59 Identities=39% Similarity=0.740 Sum_probs=48.5
Q ss_pred ccccCcccccCCCCccCCCCccceeccccCceeecc------C--CCCHHHHHHHHHhCCCCcEEEec
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYN------Q--CGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~------q--~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
.+.+|.+.|||||.|..++|++|.++++ |.+.+.. + .++.+.+++|+.+||++||+|.+
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~~ 68 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVEE 68 (68)
T ss_pred EEEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEecC
Confidence 4678999999999999999999999998 6554422 2 23447899999999999999863
No 61
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.19 E-value=1.8e-11 Score=115.75 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=52.4
Q ss_pred CccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--C-----hhHHHHHHHHHHHHHHcCCh
Q 019589 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD--D-----PETTNFCMFINEVYAVLSDP 126 (338)
Q Consensus 67 ~~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~--~-----~~a~~~f~~i~~Ay~vLsdp 126 (338)
....++|+||||++++|.++||++||+|+++||||+..+ . +.++++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 345799999999999999999999999999999999643 1 24788999999999999753
No 62
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=99.17 E-value=8.5e-12 Score=91.21 Aligned_cols=55 Identities=42% Similarity=0.718 Sum_probs=42.1
Q ss_pred cCcccccCCCCccCCCCccceeccccCceeeccCCC---CHHHHHHHHHhCCCCcEEE
Q 019589 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHR 212 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g---~~e~v~~Av~~CP~~aI~~ 212 (338)
||...||+||.|..++|++|.++++.|...++.+.. ..+.+++|++.||++||+|
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 577899999999999999999999988888888743 3468999999999999986
No 63
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=99.14 E-value=2.2e-11 Score=90.82 Aligned_cols=56 Identities=46% Similarity=0.825 Sum_probs=48.9
Q ss_pred cccCcccccCCCCccCCCCccceeccccCceeeccC---------CCCHHHHHHHHHhCCCCcEEE
Q 019589 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHR 212 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q---------~g~~e~v~~Av~~CP~~aI~~ 212 (338)
|++|...|+|||.|...+|++|.++++ |.++++.. .+..+.+++|++.||+.||+|
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 578999999999999999999999998 88777642 345579999999999999986
No 64
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.14 E-value=9.5e-11 Score=103.93 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChh-----HHHHHHHHHHHHHHcCChhHhhhhhh
Q 019589 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE 134 (338)
Q Consensus 70 ~d~Y~vLgv~~~--as~~eIk~aYr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vLsdp~~R~~YD~ 134 (338)
.|||++|||++. .+...+++.|++|++++|||+....+. +.+....||+||.+|+||.+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 599999999987 899999999999999999999876543 34456799999999999999999954
No 65
>PHA02624 large T antigen; Provisional
Probab=99.14 E-value=4.2e-11 Score=122.99 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=56.0
Q ss_pred cCCcccccCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhh
Q 019589 69 ADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132 (338)
Q Consensus 69 ~~d~Y~vLgv~~~a--s~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~Y 132 (338)
..++|+||||++++ +.++||+|||+++++||||++++ ++.|++|++||++|+|+.++..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 99999999999999999999643 67999999999999999999998
No 66
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.97 E-value=4.4e-10 Score=110.47 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=62.8
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-----ChhHHHHHHHHHHHHHHcCChhHhhhhhhhc
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-----DPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (338)
...|+|+||||+.+++..+||++||+|+.++||||.+. ..+-++.+++|++||+.|+|...|..|=.+|
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 45799999999999999999999999999999999776 2457889999999999999999999998774
No 67
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.91 E-value=2.2e-09 Score=93.88 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCh-----hHHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 81 DATPEQIKKAYYNCMKACHPDLSGDDP-----ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 81 ~as~~eIk~aYr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
+.+..+|+++|++|++++|||+..+.+ .+...|..||+||++|+||.+|..|+..
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 357889999999999999999965532 2567899999999999999999999975
No 68
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.5e-09 Score=93.13 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=60.8
Q ss_pred CccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hhHHHHHHHHHHHHHHcCChhHhhhhh
Q 019589 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYD 133 (338)
Q Consensus 67 ~~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD 133 (338)
.-.-|+|+||.|.|..+.++||+.||+|++..|||+|+++ +-+...|-.|.+||.+|-|+..|..-+
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3567999999999999999999999999999999999997 668899999999999999998776543
No 69
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.8e-09 Score=98.10 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=71.3
Q ss_pred CcccccCchhhhhhcccCCCCCCCCCcchhhhccCCcchhhhcccCCccCCCCccceecccCCCCCCccCCcccccCCCC
Q 019589 1 MAAQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAEDSASTDAIADDYYAVLGLLP 80 (338)
Q Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~d~Y~vLgv~~ 80 (338)
||||+|...|+-+-...|...+.. -++.++.+......+...-+.||.||||..
T Consensus 4 mmaqil~~~l~k~sv~~~rvkmlp--------------------------yfgiirnrll~~~kske~~~e~fril~v~e 57 (342)
T KOG0568|consen 4 MMAQILAGHLFKASVAINRVKMLP--------------------------YFGIIRNRLLHLHKSKEKIMECFRILGVEE 57 (342)
T ss_pred HHHHHHHhhhhhheeccchhcccc--------------------------hhhhHHHHHHHHhhhHHHHHHHHHHhcccc
Confidence 788888877766644444333211 122222222222233345578999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHH-HcCCh
Q 019589 81 DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA-VLSDP 126 (338)
Q Consensus 81 ~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~-vLsdp 126 (338)
+++.++|+.+|..|++++|||...+ ....+.|++|.+||. ||+..
T Consensus 58 ~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 58 GADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred cCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877 556789999999997 88654
No 70
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.5e-07 Score=94.41 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=48.2
Q ss_pred CccCCcccccCCCC----CCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCC
Q 019589 67 AIADDYYAVLGLLP----DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (338)
Q Consensus 67 ~~~~d~Y~vLgv~~----~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsd 125 (338)
....+.|+||.|+- .-..+.||++|++|+.+||||||+. ..++|..||+||+.|..
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLSS 1337 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHHH
Confidence 34567999999984 3455889999999999999999876 78999999999999983
No 71
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=3.3e-06 Score=68.25 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=52.6
Q ss_pred ccCCCCCCccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCCh
Q 019589 60 EDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDP 126 (338)
Q Consensus 60 ~~~~~~~~~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp 126 (338)
...+.+.......-.||||+++++.+.||+++|+++...|||+.+. | -.-.+||||+++|...
T Consensus 46 ~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 46 KGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT 108 (112)
T ss_pred hcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence 3455566677788899999999999999999999999999999887 3 2335799999999754
No 72
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=97.86 E-value=1.9e-05 Score=58.88 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=48.8
Q ss_pred CccccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
-.+..|...|++-|.|+...|.+|..+++ |-. .+..+..+.+.++++.||..||++.+
T Consensus 6 i~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v--~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 6 ITVTWDRERCIHAGFCVRGAPEVFDQDDE-PWV--SPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred EEEEECcCcccchhhhhcCCCCcccCCCC-CcC--CcCccCHHHHHHHHHcCCccCcEEee
Confidence 45678899999999999999999999887 433 33456778999999999999999875
No 73
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=97.78 E-value=1e-05 Score=71.54 Aligned_cols=46 Identities=30% Similarity=0.707 Sum_probs=42.6
Q ss_pred CCCCCCccccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhhHHHHH
Q 019589 149 DSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMR 226 (338)
Q Consensus 149 ~~~p~~~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~ 226 (338)
....+...++||..|+||+.| ++.||++||.+....+|+|++++||
T Consensus 103 ~~~~~~va~i~e~~ciGCtkC--------------------------------iqaCpvdAivg~~~~mhtv~~dlCT 148 (198)
T COG2878 103 EEQARMVALIDEANCIGCTKC--------------------------------IQACPVDAIVGATKAMHTVIADLCT 148 (198)
T ss_pred ccccceeeEecchhccccHHH--------------------------------HHhCChhhhhccchhHHHHHHHHhc
Confidence 345667889999999999999 9999999999999999999999999
No 74
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00018 Score=62.22 Aligned_cols=67 Identities=24% Similarity=0.479 Sum_probs=54.3
Q ss_pred ccCCcccccCCCC--CCCHHHHHHHHHHHHHhcCCCCCCCC-----hhHHHHHHHHHHHHHHcCChhHhhhhhh
Q 019589 68 IADDYYAVLGLLP--DATPEQIKKAYYNCMKACHPDLSGDD-----PETTNFCMFINEVYAVLSDPVQRMVYDE 134 (338)
Q Consensus 68 ~~~d~Y~vLgv~~--~as~~eIk~aYr~l~~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 134 (338)
...+||.++|... -..+..++.-|....+++|||+.... ..+.+....||+||.+|.||..|+.|=.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578999998664 45667777799999999999995431 2366778899999999999999999954
No 75
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.29 E-value=9.8e-05 Score=54.05 Aligned_cols=53 Identities=28% Similarity=0.590 Sum_probs=27.9
Q ss_pred ccCcccccCCCCccCCCCc----cceeccccCceeeccCCCCHHHHHHHHHhCCC-CcEEE
Q 019589 157 FVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHR 212 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~----vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~-~aI~~ 212 (338)
.+|++.|||||.|+..+|. .+.++++ +...+.. +........+..||| +||++
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~-~~~~v~~--~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEG-KKVPVNP--DKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTT-TSSECE---TT--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccChhhHHhHcCccceeeEEecCC-eeEEecc--ccCcCcCcccccCCCccCCCC
Confidence 5789999999999999994 3333333 2222222 222233344899998 99986
No 76
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=97.13 E-value=0.00043 Score=73.70 Aligned_cols=96 Identities=23% Similarity=0.355 Sum_probs=50.4
Q ss_pred CcccccCCCCccCCCCccce-e-------ccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhhHHHHHHHHH
Q 019589 159 DEFSCIGCKNCNNVAPEVFK-I-------EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVER 230 (338)
Q Consensus 159 De~~CiGCg~C~~vap~vF~-i-------ddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~~~~~ 230 (338)
++..||+||.|..+||.... + ..++.....+. ..++..+-.+...||.+ | ++.+. ++. .+
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~-~~~CieCG~C~~vCPs~-I--------plv~~-~r~-aK 435 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYN-LFDCIECGACAYVCPSN-I--------PLVQY-YRQ-AK 435 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcC-hhhccccCcccccCCCC-C--------cHHHH-HHH-HH
Confidence 56889999999999994422 1 12222211110 11222344556777775 3 22222 110 00
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019589 231 VAMMLSGMGSGSADVFRMASSRWERRQAKVLEQAKIRMM 269 (338)
Q Consensus 231 ~~~~~~g~~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~ 269 (338)
.-+ .. ..+.....+.|++||+.|++|++++..+|.+
T Consensus 436 ~~i--~~-~~~~~~~a~~ar~r~e~r~~R~~r~~~~~~~ 471 (695)
T PRK05035 436 AEI--RA-IEQEKKKAEEAKARFEARQARLEREKAAREA 471 (695)
T ss_pred HHH--HH-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 1122456778999999999999865544433
No 77
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=96.99 E-value=0.00023 Score=63.17 Aligned_cols=68 Identities=26% Similarity=0.494 Sum_probs=45.2
Q ss_pred CCCCccccCcccccCCCCccCCCC-ccceecccc----Cceee-ccC--CCCHHHHHHHHHhCCCCcEEEecCcch
Q 019589 151 CPKDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDF----GRARV-YNQ--CGINEFVQQAIESCPVDCIHRTSAQQL 218 (338)
Q Consensus 151 ~p~~~v~vDe~~CiGCg~C~~vap-~vF~iddd~----G~a~v-~~q--~g~~e~v~~Av~~CP~~aI~~~~~~~~ 218 (338)
..+.....+.+.||||+.|..+|| +.+.|..+. |..+. ..+ .|-.--+-.+++.|||+||..+..-++
T Consensus 45 rfRG~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e~ 120 (172)
T COG1143 45 RFRGRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFEL 120 (172)
T ss_pred CccceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCCcceee
Confidence 445666778888999999999999 556654331 33332 122 333344556799999999998765443
No 78
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.89 E-value=0.00078 Score=50.38 Aligned_cols=59 Identities=31% Similarity=0.470 Sum_probs=42.8
Q ss_pred cccCcccccCCCCccCCCC-ccceeccc-cCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 156 VFVDEFSCIGCKNCNNVAP-EVFKIEED-FGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap-~vF~iddd-~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
..+|...|+||+.|+.++| ++|.+.++ .+...++.. ++.-.....+..||++||.+...
T Consensus 3 ~~Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~-e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 3 IVIDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARP-EECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred eEECchhcCCCChheeccChhhEEeccccCcceeEecc-ccCccchhhhhhCCcceEEEecc
Confidence 3578888999999999999 77888765 344344433 22333667799999999998654
No 79
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=96.80 E-value=0.00051 Score=41.12 Aligned_cols=23 Identities=48% Similarity=1.204 Sum_probs=19.9
Q ss_pred ccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEE
Q 019589 157 FVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~ 211 (338)
.+|.+.|++||.| +..||.+||.
T Consensus 2 ~id~~~C~~Cg~C--------------------------------~~~CP~~ai~ 24 (24)
T PF00037_consen 2 VIDPDKCIGCGRC--------------------------------VEACPFDAIT 24 (24)
T ss_dssp EEETTTSSS-THH--------------------------------HHHSTTSSEE
T ss_pred EEchHHCCCcchh--------------------------------hhhcccccCC
Confidence 4788999999999 9999999995
No 80
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.77 E-value=0.00058 Score=55.37 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=43.8
Q ss_pred CccccCcccccCCCCccCCCCc-cceeccccCc----eeeccCCCCHHHHHHHHHhCCCCcEEEecCcch
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGR----ARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~-vF~iddd~G~----a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~ 218 (338)
..+.+|+..|++|+.|..+||. .|.+.++... ...+...+.......++..||++||.+.....+
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~~~~~ 78 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVADRKEF 78 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEecccce
Confidence 4567799999999999999984 6766543211 111111223334567899999999999876443
No 81
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=96.76 E-value=0.0011 Score=55.16 Aligned_cols=62 Identities=23% Similarity=0.548 Sum_probs=43.7
Q ss_pred CCCccccCcccccCCCCccCCCCc-cceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 152 PKDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 152 p~~~v~vDe~~CiGCg~C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
....+.++...|++|+.|..+||. .+.+.++.+.. .+ ..+.......+++.||++||.+...
T Consensus 33 ~~g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~-~i-~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 33 FRGKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKV-AL-WTGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred ccceEEECcccCcCcccHHHHCCccceEccccccce-Ee-cCCcCcChhhhHHhCCcCcEEeccc
Confidence 345678899999999999999995 44444332221 12 2334456678999999999998764
No 82
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.67 E-value=0.00039 Score=41.68 Aligned_cols=14 Identities=50% Similarity=1.251 Sum_probs=12.8
Q ss_pred cccCcccccCCCCc
Q 019589 156 VFVDEFSCIGCKNC 169 (338)
Q Consensus 156 v~vDe~~CiGCg~C 169 (338)
+.+|++.|+||+.|
T Consensus 2 ~~id~~~C~~Cg~C 15 (24)
T PF12837_consen 2 VVIDPDKCIGCGDC 15 (24)
T ss_pred cEEChhhCcChhHH
Confidence 56899999999999
No 83
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=96.48 E-value=0.00063 Score=48.30 Aligned_cols=49 Identities=29% Similarity=0.579 Sum_probs=27.1
Q ss_pred cccCCCCccCCCCc-cceeccccCceeeccCCC-----CHHHHHHHHHhCCCCcE
Q 019589 162 SCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCG-----INEFVQQAIESCPVDCI 210 (338)
Q Consensus 162 ~CiGCg~C~~vap~-vF~iddd~G~a~v~~q~g-----~~e~v~~Av~~CP~~aI 210 (338)
.||+||.|+.++|. ++.++...+......... .-......++.||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 48999999999984 455554433333222111 22344468999999998
No 84
>CHL00065 psaC photosystem I subunit VII
Probab=96.48 E-value=0.0011 Score=51.29 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=40.1
Q ss_pred cccCcccccCCCCccCCCC-ccceeccccC----ceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG----RARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap-~vF~iddd~G----~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
..++...|++|+.|..+|| +.|.+++..+ ........+.......++..||++||.+...
T Consensus 4 ~~~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 68 (81)
T CHL00065 4 SVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred ccCccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEE
Confidence 3456778999999999999 6666654322 1111112233334568999999999998754
No 85
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0023 Score=56.82 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=51.6
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChhH-----HHHHHHHHHHHHHcCChhHhhhhhh
Q 019589 71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPET-----TNFCMFINEVYAVLSDPVQRMVYDE 134 (338)
Q Consensus 71 d~Y~vLgv~~~a--s~~eIk~aYr~l~~~~HPD~~~~~~~a-----~~~f~~i~~Ay~vLsdp~~R~~YD~ 134 (338)
+++.++|+.+.+ ..+.++..|+.+++.||||+....+.. ...+..+|.||.+|.||..|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 566677777654 455699999999999999998775443 3477899999999999999999954
No 86
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=96.29 E-value=0.0019 Score=56.51 Aligned_cols=77 Identities=26% Similarity=0.366 Sum_probs=49.1
Q ss_pred ccccccCCCCCCCCCCCCccccCcccccCCCCccCCCCcc-ceec--c-ccCceeeccC---CCCHHHHHHHHHhCCCCc
Q 019589 137 GYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEV-FKIE--E-DFGRARVYNQ---CGINEFVQQAIESCPVDC 209 (338)
Q Consensus 137 G~s~~~lnp~~~~~~p~~~v~vDe~~CiGCg~C~~vap~v-F~id--d-d~G~a~v~~q---~g~~e~v~~Av~~CP~~a 209 (338)
.+...++++-|.++....+....++.||.|..|..+||-. ..++ . ..|..+...= .+-.--+-.+++.|||+|
T Consensus 87 PfEKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 87 PFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred ccccCCCCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccc
Confidence 4555677777777777778888999999999999999943 3332 2 2243222111 111111224599999999
Q ss_pred EEEe
Q 019589 210 IHRT 213 (338)
Q Consensus 210 I~~~ 213 (338)
|...
T Consensus 167 iveg 170 (212)
T KOG3256|consen 167 IVEG 170 (212)
T ss_pred eecc
Confidence 9765
No 87
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.24 E-value=0.0021 Score=49.57 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=40.2
Q ss_pred cccCcccccCCCCccCCCC-ccceeccccC-cee-e--ccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG-RAR-V--YNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap-~vF~iddd~G-~a~-v--~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
.+++...|++|+.|..+|| +.+.+++..| ... . ....+.......+++.||++||.+...
T Consensus 4 ~~~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 4 PVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CeEcCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeee
Confidence 3456779999999999999 5576654322 111 1 112233445678999999999998643
No 88
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0028 Score=56.27 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-------hhHHHHHHHHHHHHHHc
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-------PETTNFCMFINEVYAVL 123 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL 123 (338)
.+.|.+||+....+..+|+++|+++...+|||+-... ....+.++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999985432 13677888899998754
No 89
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.22 E-value=0.0028 Score=50.06 Aligned_cols=55 Identities=36% Similarity=0.564 Sum_probs=38.9
Q ss_pred ccccCcccccCCCCccCCCCcc-ceeccccCce-eeccC---CCCHHHHHHHHHhCCCCcEEEecC
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRA-RVYNQ---CGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-F~iddd~G~a-~v~~q---~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
...+|++.|+.|++|...||+. +...++.... ..++- .|-. +..||++||.++..
T Consensus 29 rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYdyCKGCGIC------a~vCP~kaI~Mv~E 88 (91)
T COG1144 29 RPVVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYDYCKGCGIC------ANVCPVKAIEMVRE 88 (91)
T ss_pred eeEEcccccccCceeEEECCchheeeccCCccceeEcccccCceec------hhhCChhheEeEee
Confidence 4458999999999999999977 4454443222 12221 3434 99999999999865
No 90
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=96.21 E-value=0.00058 Score=60.13 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=43.0
Q ss_pred CCccccCcccccCCCCccCCCC-ccceeccccC----ceeeccC-CCCHHHHHHHHHhCCCCcEEEecCcc
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFG----RARVYNQ-CGINEFVQQAIESCPVDCIHRTSAQQ 217 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap-~vF~iddd~G----~a~v~~q-~g~~e~v~~Av~~CP~~aI~~~~~~~ 217 (338)
...+.+|++.|||||.|..+|| ..+.+...-+ .+..-+. .|.+.. -..|+.||++|+..++...
T Consensus 74 ~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~g-paCVe~CP~~AL~lv~~~~ 143 (165)
T COG1142 74 DGAVQVDEEKCIGCKLCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVG-PACVEACPTEALELVDEIV 143 (165)
T ss_pred CCceEEchhhccCcchhhhcCCcceEEEEeecCcchhhhhhcccccCccCC-CceeeeCCHHHhhcccHHH
Confidence 4578899999999999999999 4455544311 1111111 222222 5679999999999987755
No 91
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.19 E-value=0.0038 Score=55.98 Aligned_cols=69 Identities=23% Similarity=0.486 Sum_probs=43.8
Q ss_pred CCCCccccCcccccCCCCccCCCCcc-ceeccccC----c---eeeccCCCCHHHHHHHHHhCCCCcEEEecCcchh
Q 019589 151 CPKDHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG----R---ARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (338)
Q Consensus 151 ~p~~~v~vDe~~CiGCg~C~~vap~v-F~iddd~G----~---a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~ 219 (338)
..+..+.++...|++|+.|..+||.. +.+..+.+ . .......+....+..+++.||++||.+....++.
T Consensus 52 ~~rG~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~ 128 (183)
T TIGR00403 52 RFRGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 128 (183)
T ss_pred cccceEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecccccccc
Confidence 33456778899999999999999953 22211110 0 0111123334456678999999999998665444
No 92
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.18 E-value=0.0027 Score=48.95 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=40.3
Q ss_pred ccccCcccccCCCCccCCCC-ccceeccccCc--eee-c-cCCCCHHHHHHHHHhCCCCcEEEe
Q 019589 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGR--ARV-Y-NQCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~--a~v-~-~q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
.++++...|++|+.|..+|| ..|.+++..+. ..+ . ...+.......+++.||++||.+.
T Consensus 2 ~~~~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 65 (80)
T TIGR03048 2 HSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVR 65 (80)
T ss_pred cceecCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEE
Confidence 35667889999999999999 55776543221 111 1 112334456789999999999875
No 93
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=96.17 E-value=0.0018 Score=57.98 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=46.1
Q ss_pred CCCCCCccccCcccccCCCCccCCCCc-cceeccc--cCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhh
Q 019589 149 DSCPKDHVFVDEFSCIGCKNCNNVAPE-VFKIEED--FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSL 220 (338)
Q Consensus 149 ~~~p~~~v~vDe~~CiGCg~C~~vap~-vF~iddd--~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~ 220 (338)
.+..+..+.+|...|++|+.|+.+||. .+.++.+ .|........+.......+++.||++||.+...-.+++
T Consensus 26 p~~~rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~~~~ 100 (181)
T PRK08222 26 SPGFRGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTV 100 (181)
T ss_pred CCCccCceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEeccceeeec
Confidence 344456677899999999999999984 3444332 12111111223334455779999999999986544443
No 94
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.13 E-value=0.0026 Score=56.74 Aligned_cols=71 Identities=24% Similarity=0.435 Sum_probs=46.6
Q ss_pred CCCCccccCcccccCCCCccCCCCc-cceecccc--CceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhh
Q 019589 151 CPKDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDF--GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (338)
Q Consensus 151 ~p~~~v~vDe~~CiGCg~C~~vap~-vF~iddd~--G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~L 221 (338)
..+....+|...|++|+.|+.+||. .+.++.+. |........+.......+++.||++||.+...-+++++
T Consensus 28 ~~rg~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~~~~~~~ 101 (180)
T PRK12387 28 NFRGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELAVW 101 (180)
T ss_pred CCCCceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCccchhhc
Confidence 3345677899999999999999984 45555432 21111112233334557899999999999866555543
No 95
>PRK02651 photosystem I subunit VII; Provisional
Probab=96.02 E-value=0.0042 Score=47.74 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=37.3
Q ss_pred ccCcccccCCCCccCCCC-ccceecccc-Cceeec---cCCCCHHHHHHHHHhCCCCcEEEe
Q 019589 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDF-GRARVY---NQCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap-~vF~iddd~-G~a~v~---~q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
......|++|+.|..+|| ..|.+++.. +....+ ...+.......+++.||++||.+.
T Consensus 5 ~~~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 66 (81)
T PRK02651 5 VKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIR 66 (81)
T ss_pred ccccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEE
Confidence 345688999999999999 556654321 111111 112333455689999999999975
No 96
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=95.96 E-value=0.0029 Score=49.62 Aligned_cols=62 Identities=24% Similarity=0.466 Sum_probs=40.1
Q ss_pred CCCccccCcccccCCCCccCCCC-ccceecc--ccC----------c---e-eeccCCCCHHHHHHHHHhCCCCcEEEe
Q 019589 152 PKDHVFVDEFSCIGCKNCNNVAP-EVFKIEE--DFG----------R---A-RVYNQCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 152 p~~~v~vDe~~CiGCg~C~~vap-~vF~idd--d~G----------~---a-~v~~q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
+...+.+|...|++|+.|..+|| +.+.+.. +.| . . ......+........+..||++||..+
T Consensus 12 ~~~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 12 PQFVTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred cceeEEECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 34456789999999999999998 4555442 001 1 0 011122333456678999999999764
No 97
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=95.72 E-value=0.0051 Score=50.12 Aligned_cols=58 Identities=26% Similarity=0.454 Sum_probs=40.0
Q ss_pred ccccCcccccCCCCccCCCCc-cceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
...++...|++|+.|...||. .|.+.++ |.. +++ .+.......+++.||++||.+...
T Consensus 45 ~p~i~~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id-~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 45 MPVVDESKCVKCYICWKFCPEPAIYIKED-GYV-AID-YDYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred eEEECcccCccccchhhhCCHhheEecCC-CcE-EeC-chhCcCcchhhhhcCcCcEEeccc
Confidence 456789999999999999985 4555443 321 222 222334567899999999998754
No 98
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=95.62 E-value=0.007 Score=53.10 Aligned_cols=63 Identities=30% Similarity=0.464 Sum_probs=39.3
Q ss_pred ccccCcc-----cccCCCCccCCCCcc-ceecccc---Ccee---eccCCCCHHHHHHHHHhCCCCcEEEecCcc
Q 019589 155 HVFVDEF-----SCIGCKNCNNVAPEV-FKIEEDF---GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQQ 217 (338)
Q Consensus 155 ~v~vDe~-----~CiGCg~C~~vap~v-F~iddd~---G~a~---v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~ 217 (338)
.+.++.. .|++|+.|..+||.. +.+.... |... .....+....+..++..||++||.+....+
T Consensus 47 ~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~ 121 (164)
T PRK05888 47 RHALRRDPNGEERCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDFE 121 (164)
T ss_pred EEeecCCCCCCccCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCcce
Confidence 4445555 999999999999943 3333211 2211 112223334556789999999999876544
No 99
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=95.61 E-value=0.011 Score=50.26 Aligned_cols=65 Identities=20% Similarity=0.425 Sum_probs=45.2
Q ss_pred cccCcccccCCC-----CccCCCCc-cceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhh
Q 019589 156 VFVDEFSCIGCK-----NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (338)
Q Consensus 156 v~vDe~~CiGCg-----~C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~L 221 (338)
.++++..|++|+ .|..+||. .+.++++...+..+. .+.......++..||.+||.+....++..+
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id-~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~ 73 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIE-PDMCWECYSCVKACPQGAIDVRGYADFAPL 73 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecC-chhCccHHHHHHhCCcCceEEECccccccc
Confidence 468899999999 99999995 455654422222222 233345678999999999999766554433
No 100
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=95.59 E-value=0.0027 Score=51.28 Aligned_cols=62 Identities=27% Similarity=0.569 Sum_probs=36.8
Q ss_pred CCccccCcccccCCCCccCCCC-ccceeccccCceeeccCCCC---HHHHHHHHHhCCCCcEEEec
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGI---NEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~---~e~v~~Av~~CP~~aI~~~~ 214 (338)
...|.+|++.|+||+.|...|| ....++.+.|.+.--+-.-+ ....=..|+.||++||.+.+
T Consensus 32 ~G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 32 DGIVVIDEDKCIGCGYCVEACPYGAIRFDPDTGKARKCDLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp TS-EEE-TTTCCTHHHHHHH-TTS-EEEETTTTCEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred CCeEEechhhccCchhhhhhhccCcceeecccccCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence 3577899999999999999999 56667766564443222100 01124679999999999865
No 101
>PRK13984 putative oxidoreductase; Provisional
Probab=95.58 E-value=0.011 Score=61.89 Aligned_cols=61 Identities=20% Similarity=0.476 Sum_probs=40.2
Q ss_pred ccccCcccccCCCCccCCCCcc-------ceeccccCcee--eccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-------FKIEEDFGRAR--VYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-------F~iddd~G~a~--v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
.+.+|...|++|+.|...||.. |..++.+|... .....+....+..+++.||++||++...
T Consensus 39 ~~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~~ 108 (604)
T PRK13984 39 FHINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTRE 108 (604)
T ss_pred ccccChhhCcCccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecce
Confidence 4557899999999999999932 33333334321 1111223344678999999999999754
No 102
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=95.49 E-value=0.0048 Score=51.18 Aligned_cols=59 Identities=29% Similarity=0.509 Sum_probs=37.8
Q ss_pred ccccCCCCccCCCC-ccceecccc---Cce---eeccCCCCHHHHHHHHHhCCCCcEEEecCcchh
Q 019589 161 FSCIGCKNCNNVAP-EVFKIEEDF---GRA---RVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (338)
Q Consensus 161 ~~CiGCg~C~~vap-~vF~iddd~---G~a---~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~ 219 (338)
..|++|+.|..+|| ..+.+.... +.. ......+.......++..||++||.+....++.
T Consensus 43 ~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~~~~~ 108 (122)
T TIGR01971 43 EKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFELA 108 (122)
T ss_pred CcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccceeeec
Confidence 89999999999999 555554321 111 111112233345678999999999887664443
No 103
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=95.32 E-value=0.013 Score=51.78 Aligned_cols=68 Identities=24% Similarity=0.492 Sum_probs=43.0
Q ss_pred CCccccCcccccCCCCccCCCCcc-ceecccc----Ccee---eccCCCCHHHHHHHHHhCCCCcEEEecCcchhh
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIEEDF----GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQQLSL 220 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap~v-F~iddd~----G~a~---v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~ 220 (338)
...+.++...|++|+.|..+||.. ..++.++ +... .....+....+..+++.||++||.+.....+++
T Consensus 51 rg~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~~~ 126 (167)
T CHL00014 51 RGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELST 126 (167)
T ss_pred CCeEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCcccccc
Confidence 345567889999999999999954 2221111 1111 111224455667899999999999876654443
No 104
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.26 E-value=0.02 Score=58.23 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCChh-------HHHHHHHHHHHHHH
Q 019589 80 PDATPEQIKKAYYNCMKACHPDLSGDDPE-------TTNFCMFINEVYAV 122 (338)
Q Consensus 80 ~~as~~eIk~aYr~l~~~~HPD~~~~~~~-------a~~~f~~i~~Ay~v 122 (338)
.-.+.++||++||+..+..||||.++.+. +++.|-.+++|+..
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 44789999999999999999999877431 34444455555543
No 105
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=95.25 E-value=0.051 Score=50.45 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=41.7
Q ss_pred CccccCcccccCCCCccCCCCc---ccee--ccccCceeeccC-------CCCHHHHHHHHHhCCCCcEEEecC
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPE---VFKI--EEDFGRARVYNQ-------CGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~---vF~i--ddd~G~a~v~~q-------~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
..+.+|...|++|+.|...|+. .+.+ ....+..+++.. .......-.+++.||++||.....
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 4566899999999999999984 2333 323333444322 122345678999999999988755
No 106
>PRK09898 hypothetical protein; Provisional
Probab=95.14 E-value=0.017 Score=52.59 Aligned_cols=59 Identities=17% Similarity=0.456 Sum_probs=41.8
Q ss_pred ccccCcccccCCCCccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchh
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~ 219 (338)
.+.+|...|++|+.|...||.. ..++...+ ..+.......+++.||++||.+++..+++
T Consensus 148 ~v~vd~~~CigC~~C~~aCP~~ai~~~~~~~------~~~kC~~Cg~Cv~~CP~~Ai~~~~~~~~~ 207 (208)
T PRK09898 148 CITVDHKRCIGCSACTTACPWMMATVNTESK------KSSKCVLCGECANACPTGALKIIEWKDIT 207 (208)
T ss_pred eEEeccccCCCcCcccccCCCCCCEecCCCC------cCCcCcChHHHHHhCCcccEEEecHHHcc
Confidence 4567889999999999999943 33433211 12233455689999999999998776554
No 107
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.11 E-value=0.014 Score=58.70 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=41.6
Q ss_pred CccccCcccccCCCCccCCCCc----cceeccccCceeeccCCCCHHHHHHHHHhCCC-CcEEEecC
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHRTSA 215 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~----vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~-~aI~~~~~ 215 (338)
....+|+..|++|+.|...||. .+.++++ |..........+..+..++..||+ +||++...
T Consensus 335 ~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~-~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~ 400 (420)
T PRK08318 335 VYARIDQDKCIGCGRCYIACEDTSHQAIEWDED-GTRTPEVIEEECVGCNLCAHVCPVEGCITMGEV 400 (420)
T ss_pred eEEEECHHHCCCCCcccccCCCcchhheeeccC-CCceEEechhhCcccchHHhhCCCCCCEEEecc
Confidence 3445789999999999999995 4555433 222111222334456678999999 99998765
No 108
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=94.95 E-value=0.018 Score=49.02 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=38.9
Q ss_pred ccccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
...++...|++|+.|..+||.......+ +....+. .+.......+++.||++||.+.-.
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~-~~~~~i~-~~~C~~Cg~Cv~vCP~~a~~l~~~ 111 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRD-KKLKGVD-YSHCKGCGVCVEVCPTNPKSLLMF 111 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecC-CceEEeC-cCcCcChhHHHHHCCcCceEEEec
Confidence 4457899999999999999955332222 2222222 233445667899999999876543
No 109
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=94.89 E-value=0.02 Score=51.73 Aligned_cols=59 Identities=25% Similarity=0.572 Sum_probs=40.8
Q ss_pred CccccCcccccCCCCccCCCC-ccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
....+|.+.|++|+.|+..|| +.+...++ |...+. .+.....-.++..||++||.+.+.
T Consensus 107 ~~~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~-~~~~v~--~~~C~~Cg~Cv~vCP~~AI~~~~~ 166 (191)
T PRK05113 107 KVAFIDEDNCIGCTKCIQACPVDAIVGATK-AMHTVI--SDLCTGCDLCVAPCPTDCIEMIPV 166 (191)
T ss_pred ceeEEeCCcCCCCChhhhhCCHhhhecccC-Cceeec--CCcCCchHHHHHHcCcCceEEeec
Confidence 356789999999999999998 33333322 222222 233445678899999999999854
No 110
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.89 E-value=0.05 Score=46.01 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=40.4
Q ss_pred CccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhH
Q 019589 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128 (338)
Q Consensus 67 ~~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~ 128 (338)
.....-..||||++..+.++|.+.|..|....+|++.+. .-.-..|..|.+.|....+
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHHH
Confidence 344568899999999999999999999999999998665 2223478889988876553
No 111
>PRK06991 ferredoxin; Provisional
Probab=94.83 E-value=0.034 Score=52.94 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.9
Q ss_pred cccCcccccCCCCccCCCCcc
Q 019589 156 VFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~v 176 (338)
..++...|++||.|..+||..
T Consensus 110 ~~v~~~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 110 HTVLADLCTGCDLCVPPCPVD 130 (270)
T ss_pred eeeCHhhCCCchHHHhhCCcC
Confidence 457788999999999999953
No 112
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=94.76 E-value=0.0099 Score=54.13 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=43.4
Q ss_pred CCccccCcccccCCCCccCCCC-ccceeccccCceeeccCCCCHH-----HHHHHHHhCCCCcEEEecCcchhh
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINE-----FVQQAIESCPVDCIHRTSAQQLSL 220 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~e-----~v~~Av~~CP~~aI~~~~~~~~~~ 220 (338)
...|.+|.+.||||+.|...|| ..-.++.+.|.+..-.- -.+ ..=..|++||++|+.+-+..++..
T Consensus 92 dGiV~vd~d~CIGC~yCi~ACPyga~~~~~~~~~~~KCt~--C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~ 163 (203)
T COG0437 92 DGIVLVDKDLCIGCGYCIAACPYGAPQFNPDKGVVDKCTF--CVDRVAVGKLPACVEACPTGALIFGDIDDPKS 163 (203)
T ss_pred CCEEEecCCcccCchHHHhhCCCCCceeCcccCcccccCc--chhhHhcCCCCcccccCCcccccccchhhcch
Confidence 4567899999999999999999 44455555443221110 011 222569999999999766655544
No 113
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=94.47 E-value=0.03 Score=53.17 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=37.8
Q ss_pred cCcccccCCCCccCCCCccceecc-ccCceee-ccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 158 VDEFSCIGCKNCNNVAPEVFKIEE-DFGRARV-YNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~vF~idd-d~G~a~v-~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
+|.+.|++|+.|...||..-.+.+ ..|.... ....++...+.++++.||++||++..
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 263 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFTI 263 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeecc
Confidence 788999999999999996432220 0011111 11224455677899999999999864
No 114
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=94.44 E-value=0.048 Score=51.51 Aligned_cols=94 Identities=17% Similarity=0.307 Sum_probs=59.4
Q ss_pred ccccCcccccCCCCccCCCC-ccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhhHHHHHHHHHHHH
Q 019589 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVAM 233 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~~~~~~~~ 233 (338)
.+.+ ...|++|+.|...|| .+|.+++ |...+.. ......+..++..||.+||.+......-++.-
T Consensus 164 ~I~i-~~~C~~C~~C~~~CP~~vi~~~~--~~~~v~~-~~~C~~C~~Ci~~CP~~AI~i~~~~~~~if~v---------- 229 (263)
T PRK00783 164 RIEV-SEDCDECEKCVEACPRGVLELKE--GKLVVTD-LLNCSLCKLCERACPGKAIRVSDDENKFIFTV---------- 229 (263)
T ss_pred cccc-cccCCchHHHHHhCCccccEecC--CeEEEeC-hhhCCCchHHHHhCCCCceEEEEcCCeEEEEe----------
Confidence 3444 788999999999999 4788866 3444332 22333556788999999999987655433221
Q ss_pred hccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 019589 234 MLSGMGSGSADVFRMASSRWERRQAKVLEQ 263 (338)
Q Consensus 234 ~~~g~~~~~~~~~~~a~~~~~~r~~~~~~~ 263 (338)
..+|.= ...+.+.+|-.-.+.+...+.++
T Consensus 230 Es~G~l-~p~~iv~~A~~~l~~k~~~~~~~ 258 (263)
T PRK00783 230 ESDGSL-PVEEILLEALKILKRKADELIEA 258 (263)
T ss_pred ccCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 122221 22566777766666666555443
No 115
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=94.39 E-value=0.024 Score=57.01 Aligned_cols=54 Identities=19% Similarity=0.478 Sum_probs=38.8
Q ss_pred ccccCcccccCCCCccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEE
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~ 212 (338)
.+.+|...|++|+.|...||.. +..++. + .++ ..+.+..+..++..||++||..
T Consensus 4 ~~~id~~~Ci~C~~C~~~CP~~ai~~~~~-~--~~i-~~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 4 QHLIDPEICIRCNTCEETCPIDAITHDDR-N--YVV-KADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eeeeCcccCcCccchhhhCCcccEeccCC-c--eEe-CcccCcCHHHHHhhcCccccee
Confidence 4568999999999999999954 333321 2 222 2344556788999999999985
No 116
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=94.31 E-value=0.015 Score=47.50 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=38.1
Q ss_pred ccCcccccCCCCccCCCCc-cceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 157 FVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
.+|...|++|+.|..+||. .+.++++ +.. ++. .+.......+++.||.+||.++.
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id-~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPAIYLDEE-GYP-VFD-YDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred EEChhHCcChhhHHhhCCHhhEEecCC-CcE-EEC-chhCCCcCchhhhcCcCcEEEec
Confidence 4789999999999999994 4555543 322 222 22233455689999999998763
No 117
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.17 E-value=0.018 Score=33.73 Aligned_cols=16 Identities=38% Similarity=0.937 Sum_probs=13.6
Q ss_pred cccCcccccCCCCccC
Q 019589 156 VFVDEFSCIGCKNCNN 171 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~ 171 (338)
.++|...|+||+.|..
T Consensus 3 ~~iD~~rCiGC~~C~~ 18 (22)
T PF12797_consen 3 MVIDLERCIGCGACEV 18 (22)
T ss_pred eEEccccccCchhHHH
Confidence 5689999999999943
No 118
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.048 Score=40.83 Aligned_cols=55 Identities=20% Similarity=0.459 Sum_probs=45.2
Q ss_pred ccccCcccccCCCCccCCCCccceeccccCcee-eccCCCCHHHHHHHHHhCCCCcEEEe
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRAR-VYNQCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~-v~~q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
.+..+...|...++|+.-.+.+|.+. +.- +.++..+.+.+..-+++||..||+..
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~vF~~~----rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPKVFNLG----RKPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred EEEeccceeecccceecCCHhhcccC----CCCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 45567788999999999999999883 333 34557889999999999999999765
No 119
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=94.03 E-value=0.021 Score=57.80 Aligned_cols=36 Identities=36% Similarity=0.769 Sum_probs=30.0
Q ss_pred ccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhhHHHHH
Q 019589 157 FVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMR 226 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~ 226 (338)
++.|..|+|||.| +.-||.+||.++.-+ .-||..|+
T Consensus 46 vIsE~lCiGCGIC--------------------------------vkkCPF~AI~IvnLP--~eLe~e~v 81 (591)
T COG1245 46 VISEELCIGCGIC--------------------------------VKKCPFDAISIVNLP--EELEEEVV 81 (591)
T ss_pred eeEhhhhccchhh--------------------------------hccCCcceEEEecCc--hhhcccce
Confidence 7889999999999 999999999999664 35666655
No 120
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=93.98 E-value=0.024 Score=43.12 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=37.8
Q ss_pred ccccCcccccCCCCccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
...++...|++|+.|..+||.. +.++++ +... +. .+.......++..||++||.+..
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~~~~-~~~~-i~-~~~C~~C~~C~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQEDEG-GFVG-ID-YDYCKGCGICANVCPVKAIEMVR 76 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEecCC-CcEE-ec-CccCcCccchhhhCCccccEecc
Confidence 3467889999999999999944 444332 3222 22 12233456779999999998764
No 121
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=93.82 E-value=0.017 Score=55.29 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=36.7
Q ss_pred ccccCcccccCCCCccCCCC-ccceeccccCceeeccCCCCH---HHHHHHHHhCCCCcEEEecCcchhh
Q 019589 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTSAQQLSL 220 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~---e~v~~Av~~CP~~aI~~~~~~~~~~ 220 (338)
.+.+|.+.|+||+.|...|| +.+.+++..+....-.-..+. ...-.++..||++||.+.+..++..
T Consensus 118 ~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~ 187 (283)
T TIGR01582 118 IVDFDHSKCIGCGYCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKE 187 (283)
T ss_pred cEEEeHHHCCcchHHHhhCCCCCcEEcCCCCChhhhcccccccccCCCChHhCcccHhhEEECCHHHHHH
Confidence 45678888888888888887 445555433221100000000 0112468888888888776544433
No 122
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=93.82 E-value=0.043 Score=48.31 Aligned_cols=57 Identities=25% Similarity=0.450 Sum_probs=38.9
Q ss_pred CccccCcccccCCCCccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEe
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
..+.+|...|++|+.|...||.. +.++++ +.. .+. .+.......+++.||++||.++
T Consensus 106 ~~~~id~~~Ci~Cg~C~~aCp~~ai~~~~~-~~~-~i~-~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 106 MVALIDEDNCIGCTKCIQACPVDAIVGAAK-AMH-TVI-ADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred ceEEEECCcCCChhHHHHhCCccceEecCC-Cce-Eee-cccccChhHHHHhcCcCceEee
Confidence 35678999999999999999843 333322 221 222 1233456688999999999876
No 123
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=93.62 E-value=0.045 Score=51.53 Aligned_cols=54 Identities=26% Similarity=0.471 Sum_probs=36.2
Q ss_pred CcccccCCCCccCCCCccc--eeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEe
Q 019589 159 DEFSCIGCKNCNNVAPEVF--KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 159 De~~CiGCg~C~~vap~vF--~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
|++.|++|+.|..+||..- ......+....+ ..++...+.++++.||++||.+.
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLV-LSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEe-ccccccchhHHHHhCCccccccc
Confidence 5899999999999999542 222111111111 23455677889999999999763
No 124
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=93.54 E-value=0.02 Score=46.20 Aligned_cols=57 Identities=18% Similarity=0.440 Sum_probs=37.4
Q ss_pred cCcccccCCCCccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 158 VDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
++...|++|+.|..+||.. +.++.+ |........+.......++..||+++|+-.+.
T Consensus 31 ~~~~~C~~C~~C~~~CP~~~i~~~~~-g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~~ 88 (101)
T TIGR00402 31 LFSAVCTRCGECASACENNILQLGQQ-GQPTVEFDNAECDFCGKCAEACPTNAFHPRFP 88 (101)
T ss_pred cCcCcCcChhHHHHHcCcccceeccC-CceeeEecCccCcCccChhhHCCccccCcCCC
Confidence 5567899999999999953 444432 33222222333344567799999999976544
No 125
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=93.45 E-value=0.048 Score=42.67 Aligned_cols=59 Identities=24% Similarity=0.446 Sum_probs=36.7
Q ss_pred ccCcccccCCCCccCCCCcc-ceeccccC-ceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDFG-RARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~v-F~iddd~G-~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
.++...|++||.|..+||.. ..+..+.. ........+........+..||++||.+...
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhc
Confidence 57778899999999999965 33322210 0111111222334447788999999877644
No 126
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=93.44 E-value=0.028 Score=52.16 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=42.8
Q ss_pred cccCcccccCCCCccCCCC-ccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhhHH
Q 019589 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLED 223 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~ 223 (338)
..+|...|++|+.|..+|| +.+.+++ +... + .......+..++..||++||.....-++.+...
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~~~--~~~~-i-~~~~C~~Cg~C~~~CP~~AI~~~~~~~~~~~~~ 207 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDMVD--GKAF-I-RLLKCVGCGKCKEACPYNAIHGGLEYEMRVRSV 207 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEecC--CceE-E-chhhCCccchHHhhCCCCceecCCceEEeeeeh
Confidence 3578899999999999999 4455543 2221 1 222333566789999999999775544444443
No 127
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=93.29 E-value=0.012 Score=56.21 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=49.1
Q ss_pred ccccCcccccCCCCccCCCCcc-----ceeccccCceeeccCCCCH----HHHHHHHHhCCCCcEEEecCcchhhhHHHH
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCGIN----EFVQQAIESCPVDCIHRTSAQQLSLLEDEM 225 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-----F~iddd~G~a~v~~q~g~~----e~v~~Av~~CP~~aI~~~~~~~~~~Le~~~ 225 (338)
.+.+|...||-|+.|+.+|.++ +.+..+....++....+.. .....+++.|||.||...+..+-+.+...+
T Consensus 206 ~i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~~~~~~~~~~ 285 (297)
T PTZ00305 206 QTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDADENNAIAREL 285 (297)
T ss_pred ceeecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCcccchHHHHHh
Confidence 4457889999999999998653 4455554445544433321 122357999999999999998888777644
No 128
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=93.24 E-value=0.038 Score=53.38 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=38.3
Q ss_pred ccccCcccccCCCCccCCCCcccee---cccc---C---ceeecc-CCCCHHHHHHHHHhCCCCcEEEec
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKI---EEDF---G---RARVYN-QCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~i---ddd~---G---~a~v~~-q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
...+|...|++|+.|...||...-. .... + ...++. ..+.+..+..+++.||++||.++.
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 4456899999999999999955211 1100 1 111111 123345567889999999999864
No 129
>PRK13409 putative ATPase RIL; Provisional
Probab=93.19 E-value=0.042 Score=57.84 Aligned_cols=31 Identities=32% Similarity=0.772 Sum_probs=26.4
Q ss_pred CCccccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
....++.|..|||||.| |.-||.+||.++.-
T Consensus 41 ~~~~~~~e~~c~~c~~c--------------------------------~~~cp~~a~~i~~~ 71 (590)
T PRK13409 41 DGKPVISEELCIGCGIC--------------------------------VKKCPFDAISIVNL 71 (590)
T ss_pred CCCceeeHhhccccccc--------------------------------cccCCcceEEEeeC
Confidence 34678899999999999 88999999998754
No 130
>PRK08764 ferredoxin; Provisional
Probab=92.70 E-value=0.064 Score=45.62 Aligned_cols=54 Identities=26% Similarity=0.549 Sum_probs=33.9
Q ss_pred cccCcccccCCCCccCCCCc-cceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEE
Q 019589 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~ 212 (338)
.++++..|++|+.|+.+||. .+.++++ +...+. .........++..||++||.+
T Consensus 80 ~~~~~~~Ci~C~~Cv~aCp~~ai~~~~~-~~~~v~--~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 80 AWIVEADCIGCTKCIQACPVDAIVGGAK-HMHTVI--APLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred EEECcccCcCcchHHHhCChhhcCccCC-Cceeec--CCcCcCccchhhhcCccceEe
Confidence 34566899999999999983 2233222 222211 122233456899999999976
No 131
>PRK10194 ferredoxin-type protein; Provisional
Probab=92.65 E-value=0.035 Score=48.62 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=35.8
Q ss_pred CcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 159 DEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 159 De~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
+...|++|+.|+.+||......++.|...+.-..+........++.||+++|.....
T Consensus 32 ~~~~C~~Cg~C~~aCp~~~i~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ai~~~~~ 88 (163)
T PRK10194 32 FLTHCTRCDACINACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRHT 88 (163)
T ss_pred HhhhCcChhHHHHHcChhhcccCCCCceeeeecCCCCCCchhhHhhCcchheecccc
Confidence 456899999999999965432223343222222233344567899999999886543
No 132
>PRK06273 ferredoxin; Provisional
Probab=92.49 E-value=0.024 Score=50.10 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=35.1
Q ss_pred cccCcccccCCCCccCCCCcc-ceeccccC------c----eeeccCCCCHHHHHHHHHhCCCCcEEEe
Q 019589 156 VFVDEFSCIGCKNCNNVAPEV-FKIEEDFG------R----ARVYNQCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~v-F~iddd~G------~----a~v~~q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
..+++..|++|+.|..+||.. +.+..+.. . ...++ ......+..+++.||++||...
T Consensus 44 ~~id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id-~~kCi~Cg~C~~aCP~~AI~~~ 111 (165)
T PRK06273 44 KKVFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKID-YEKCVYCLYCHDFCPVFALFNE 111 (165)
T ss_pred CeECchhCcChhHHHHhcCccceeeecccccchhcccccccceecc-cccCcCCCCcchhCCHhheecc
Confidence 356888999999999999943 44432100 0 01111 1222234568999999999654
No 133
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=92.44 E-value=0.039 Score=38.61 Aligned_cols=20 Identities=45% Similarity=1.075 Sum_probs=8.2
Q ss_pred cccCcccccCCCCccCCCCc
Q 019589 156 VFVDEFSCIGCKNCNNVAPE 175 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~ 175 (338)
+.+|.+.|++|+.|..++|.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 56899999999999999987
No 134
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=92.30 E-value=0.04 Score=52.43 Aligned_cols=61 Identities=23% Similarity=0.516 Sum_probs=39.8
Q ss_pred CCccccCcccccCCCCccCCCCccc-ee--ccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAPEVF-KI--EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap~vF-~i--ddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
...+.+|...|++|+.|..+||..- .+ ..+ +...+.........+..++..||++||.+..
T Consensus 40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~-~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g 103 (295)
T TIGR02494 40 SPELLFKENRCLGCGKCVEVCPAGTARLSELAD-GRNRIIIRREKCTHCGKCTEACPSGALSIVG 103 (295)
T ss_pred CceEEEccccCCCCchhhhhCcccccccccccC-CCcceeechhhcCchhHhhccCcHhHHhhhc
Confidence 4567889999999999999998431 11 111 1112222223334566889999999998853
No 135
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=92.19 E-value=0.13 Score=48.33 Aligned_cols=87 Identities=16% Similarity=0.278 Sum_probs=53.9
Q ss_pred cccccCCCCccCCCC-ccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhhHHHHHHHHHHHHhccCC
Q 019589 160 EFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVAMMLSGM 238 (338)
Q Consensus 160 e~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~~~~~~~~~~~g~ 238 (338)
...|++|+.|...|| .+|.++++ ...+.. .+....+..++..||.+||.+......-+++- ..+|+
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~d~~--~~~v~~-~~~C~~C~~C~~~Cp~~AI~~~~~~~~~if~v----------Es~Gs 234 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVLELEEG--KVVVED-LEDCSLCKLCERACDAGAIRVGWDEDRFIFEV----------ESDGS 234 (259)
T ss_pred hhhCCChHHHHHhCCccceEccCC--eeEEeC-hhhCcCchHHHHhCCCCcEEEEecCCEEEEEE----------eCCCC
Confidence 478999999999999 66777553 222222 23344566789999999999986554433221 12222
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 019589 239 GSGSADVFRMASSRWERRQAKV 260 (338)
Q Consensus 239 ~~~~~~~~~~a~~~~~~r~~~~ 260 (338)
-...+.+..|-.-...+...+
T Consensus 235 -l~p~~il~~A~~~l~~k~~~~ 255 (259)
T cd07030 235 -LPPKEILLEALRILKEKADEL 255 (259)
T ss_pred -CCHHHHHHHHHHHHHHHHHHH
Confidence 123566777766666555444
No 136
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=91.91 E-value=0.058 Score=47.94 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=39.9
Q ss_pred ccccCcccccCCCCccCCCCcc-ceeccccCc------------eeeccC---CCCHHHHHHHHHhCCCCcEEEecCcch
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGR------------ARVYNQ---CGINEFVQQAIESCPVDCIHRTSAQQL 218 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-F~iddd~G~------------a~v~~q---~g~~e~v~~Av~~CP~~aI~~~~~~~~ 218 (338)
.+.++...|++|+.|...||.. ..+..+... ...... .++...--..+..||++||.+++..++
T Consensus 81 ~v~i~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~ 160 (181)
T PRK10330 81 FVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL 160 (181)
T ss_pred eEEeChhhCCCcchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHH
Confidence 4567889999999999999843 333321110 000001 111000015899999999999877555
Q ss_pred hhhHH
Q 019589 219 SLLED 223 (338)
Q Consensus 219 ~~Le~ 223 (338)
..++.
T Consensus 161 ~~~~~ 165 (181)
T PRK10330 161 EQLSA 165 (181)
T ss_pred HHHHH
Confidence 44333
No 137
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.52 E-value=0.063 Score=57.01 Aligned_cols=64 Identities=25% Similarity=0.495 Sum_probs=39.5
Q ss_pred ccccCcccccCCCCccCCCCc-cceeccccC-ceeeccCCCCHHHHH------HHHHhCCCCcEEEecCcch
Q 019589 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFG-RARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQQL 218 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~-vF~iddd~G-~a~v~~q~g~~e~v~------~Av~~CP~~aI~~~~~~~~ 218 (338)
.+.+|...|++|+.|...||. .+.+..... .............+. .++..||++||.+++...+
T Consensus 79 ~~~id~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~ 150 (654)
T PRK12769 79 SIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQAL 150 (654)
T ss_pred eEEEecccccCcChhcccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHH
Confidence 456889999999999999993 344433211 000001111122222 5789999999999876444
No 138
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=91.51 E-value=0.11 Score=50.83 Aligned_cols=61 Identities=21% Similarity=0.386 Sum_probs=35.7
Q ss_pred CccccCcccccCCCCccCCCCcc-ceeccccCceeeccC---CCCH--HHHH-----HHHHhCCCCcEEEecC
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQ---CGIN--EFVQ-----QAIESCPVDCIHRTSA 215 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~v-F~iddd~G~a~v~~q---~g~~--e~v~-----~Av~~CP~~aI~~~~~ 215 (338)
..+.+|...|++|+.|...||.. ..++.+... ..+.. .++. +.+. .+++.||++||..-+.
T Consensus 136 g~V~id~dkCigCg~Cv~aCP~gai~~~~~~~~-~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~ 207 (328)
T PRK10882 136 GIVHYDKDVCTGCRYCMVACPFNVPKYDYNNPF-GAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTR 207 (328)
T ss_pred CcccCCHHHcCcccHHHHhCCccceeccccccc-cceeecccccccchhhhhcCCCChhhhhccccceEeccH
Confidence 35567899999999999999833 222221111 11111 1110 0111 2899999999987654
No 139
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=91.34 E-value=0.12 Score=47.86 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=32.4
Q ss_pred ccccCcccccCCCCccCCCCccc-eeccccCceeeccCCCCHHHH-----HHHHHhCCCCcEEEecCc
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEFV-----QQAIESCPVDCIHRTSAQ 216 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF-~iddd~G~a~v~~q~g~~e~v-----~~Av~~CP~~aI~~~~~~ 216 (338)
.+.+|...|++|+.|...||... .++...+...--.-.++. .+ =.+++.||++||.+.+..
T Consensus 119 ~v~id~~~C~~C~~C~~aCP~~A~~~~~~~~~~~kC~~C~~~-~~~~g~~P~Cv~~Cp~~Ai~f~~~~ 185 (225)
T TIGR03149 119 IVDVHKDLCVGCQYCIAACPYRVRFIHPVTKSADKCNFCRDT-NLAEGKLPACVESCPTKALTFGDLN 185 (225)
T ss_pred eEEechhhCCcchHHHHhCCCCCcEecCCCCccccCCCCCcc-hhhCCCCCcccccCccCCEEEeccc
Confidence 34567788888888888888432 222211110000001110 01 157888888888876553
No 140
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=91.14 E-value=0.12 Score=55.08 Aligned_cols=112 Identities=20% Similarity=0.270 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCC------CCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcccccccCCCCCCCCCCCCcccc
Q 019589 85 EQIKKAYYNCMKACHPD------LSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFV 158 (338)
Q Consensus 85 ~eIk~aYr~l~~~~HPD------~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s~~~lnp~~~~~~p~~~v~v 158 (338)
+++++---.+.+..||= .|.++ -.|+++-..|+=..+|--|+... +........-+...
T Consensus 82 k~~r~~~md~~l~nH~LyC~vCd~nnGd-------Celh~~~~~~gl~~q~y~y~~k~--------~~~~~Des~Pfy~y 146 (978)
T COG3383 82 KEARREAMDRILSNHPLYCTVCDNNNGD-------CELHNMVMALGLTEQRYPYEEKN--------PPYPKDESNPFYIY 146 (978)
T ss_pred HHHHHHHHHHHHhcCCcCccccCCCCCC-------chHHHHHHHhCCCccccCccccC--------CCCCcccCCCeEEe
Confidence 44555555667777884 33232 23555555555555566565431 11111111123346
Q ss_pred CcccccCCCCccCCCCcc---ce--eccccCceeeccCCC------CHHHHHHHHHhCCCCcEE
Q 019589 159 DEFSCIGCKNCNNVAPEV---FK--IEEDFGRARVYNQCG------INEFVQQAIESCPVDCIH 211 (338)
Q Consensus 159 De~~CiGCg~C~~vap~v---F~--iddd~G~a~v~~q~g------~~e~v~~Av~~CP~~aI~ 211 (338)
|...||-||.|+..|.++ |. ++.+.-..+|+-..+ .+-.+=.+|+.||++|+-
T Consensus 147 dp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 147 DPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred cchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhh
Confidence 888999999999999754 44 444434455554322 112344679999999984
No 141
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=91.08 E-value=0.059 Score=49.82 Aligned_cols=61 Identities=25% Similarity=0.550 Sum_probs=38.4
Q ss_pred CccccCcccccCCCCccCCCCccceeccccCceeeccC--CC---------CHH---HHH--HHHHhCCCCcEEEec
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--CG---------INE---FVQ--QAIESCPVDCIHRTS 214 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q--~g---------~~e---~v~--~Av~~CP~~aI~~~~ 214 (338)
..+++|...|+||+.|...|+..+.+.+......++.. .+ ... ... .++..||++||....
T Consensus 39 ~~~~iD~~rCigC~~C~~aC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~ 115 (225)
T TIGR03149 39 YGMVHDETACIGCTACMDACREVNKVPEGVSRLEIIRSEPYGEFPDVEYRFFRKSCQHCDNAPCVAVCPTGASFKDE 115 (225)
T ss_pred EEEEEEHHHCcCcHHHHHHhhHHhCCCCCCceEEEEEecccCCCCCceeEECchhccCCcCcChHhhCCCCcEEEeC
Confidence 34678999999999999999976554432222222111 00 011 112 389999999998764
No 142
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=90.96 E-value=0.072 Score=52.88 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=37.9
Q ss_pred cccCcccccCCCCccCCCCcccee-----ccccCceeecc------CCCCHHHHHHHHHhCCCCcEEEe
Q 019589 156 VFVDEFSCIGCKNCNNVAPEVFKI-----EEDFGRARVYN------QCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~vF~i-----ddd~G~a~v~~------q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
+.+|...|++|+.|..+||..... .++.+...+.. .......+..++..||++||...
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 457889999999999999965432 12212222211 12233345678999999999876
No 143
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=90.95 E-value=0.087 Score=27.97 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=6.3
Q ss_pred HHhCCCCc
Q 019589 202 IESCPVDC 209 (338)
Q Consensus 202 v~~CP~~a 209 (338)
++.||++|
T Consensus 8 ~~~Cp~~A 15 (15)
T PF12798_consen 8 VEVCPTGA 15 (15)
T ss_pred HHHhcCCC
Confidence 88888875
No 144
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=90.87 E-value=0.11 Score=45.31 Aligned_cols=59 Identities=24% Similarity=0.483 Sum_probs=36.0
Q ss_pred ccccCcccccCCCCccCCCCc-cceeccccCceeeccCCCCHHHHH-----HHHHhCCCCcEEEecC
Q 019589 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSA 215 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~-----~Av~~CP~~aI~~~~~ 215 (338)
.+.++...|++|+.|...||. .+.++.+.+....- .+-.+.+. .++..||++||.+.+.
T Consensus 89 ~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~~~~~kC--~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~ 153 (161)
T TIGR02951 89 LVLVDQDKCIGCRYCVWACPYGAPQYDPQQGVMGKC--DGCYDRVEKGLRPACVDACPMRALDFGPI 153 (161)
T ss_pred cEEECHHhCCCchHHHhhCCCCCcEEcCCCCccccC--CCCHHHHHCCCCCcchhhccccceEEecH
Confidence 456778889999999998883 45555443321100 11111222 5788899999988654
No 145
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=90.55 E-value=0.42 Score=51.33 Aligned_cols=21 Identities=33% Similarity=0.860 Sum_probs=17.5
Q ss_pred CcccccCCCCccCCCCcccee
Q 019589 159 DEFSCIGCKNCNNVAPEVFKI 179 (338)
Q Consensus 159 De~~CiGCg~C~~vap~vF~i 179 (338)
+.+.|++||.|..+||....+
T Consensus 407 ~~~~CieCG~C~~vCPs~Ipl 427 (695)
T PRK05035 407 NLFDCIECGACAYVCPSNIPL 427 (695)
T ss_pred ChhhccccCcccccCCCCCcH
Confidence 446899999999999977655
No 146
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=90.39 E-value=0.18 Score=51.16 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=29.9
Q ss_pred cccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCC
Q 019589 160 EFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPV 207 (338)
Q Consensus 160 e~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~ 207 (338)
+..|++|+.|..+||....+++ | ....+..+..+++.||.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~~~--~------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDIRD--G------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCChhhhHHhCCCCCEeCC--C------CchhChhhhHHHHhCCC
Confidence 5789999999999997754433 2 12345567889999996
No 147
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=90.24 E-value=0.063 Score=39.52 Aligned_cols=14 Identities=29% Similarity=0.639 Sum_probs=12.3
Q ss_pred HHhCCCCcEEEecC
Q 019589 202 IESCPVDCIHRTSA 215 (338)
Q Consensus 202 v~~CP~~aI~~~~~ 215 (338)
++.||++||...+.
T Consensus 9 ~~~CP~~AI~~~~~ 22 (67)
T PF13484_consen 9 AEACPTGAISGEDE 22 (67)
T ss_pred HHhCcHhhccCCCc
Confidence 99999999998844
No 148
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=90.02 E-value=0.21 Score=52.53 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=42.0
Q ss_pred ccccCcccccCCCCccCCCCc-----cceeccccCceeeccCCC---CHHHHHHHHHhCCCCcEEEe
Q 019589 155 HVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~-----vF~iddd~G~a~v~~q~g---~~e~v~~Av~~CP~~aI~~~ 213 (338)
.+..|...||-|+.|+.+|.+ .+.+..+....++....+ +.+.+-.+|+.|||.||.-.
T Consensus 136 ~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k 202 (603)
T TIGR01973 136 LIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSK 202 (603)
T ss_pred CeEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCccccccc
Confidence 567899999999999988854 456666655555543322 23455688999999999754
No 149
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=89.98 E-value=0.28 Score=49.80 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=35.5
Q ss_pred CCCCccccCcccccCCC--CccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 151 CPKDHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 151 ~p~~~v~vDe~~CiGCg--~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
.+...++.....|++|+ .|..+||.. ...+++.|... ++. +....+..++..||.+||.+..
T Consensus 171 ~p~~~m~y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~-ID~-dkCiGCg~CV~ACPygAI~~n~ 235 (492)
T TIGR01660 171 FENTFMMYLPRLCEHCLNPACVASCPSGAIYKREEDGIVL-IDQ-DKCRGWRMCISGCPYKKIYFNW 235 (492)
T ss_pred CCCceEEECCCcCcCCCcccchhhCccCCeEEecCCCeEE-Eeh-hhccChHHHHHhCCCCCcEecC
Confidence 33445556777888887 788888754 22333335322 221 2223355678888888887653
No 150
>PRK10194 ferredoxin-type protein; Provisional
Probab=89.86 E-value=0.18 Score=44.01 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=31.6
Q ss_pred ccCCCCccCCCCc-cceeccc-cCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 163 CIGCKNCNNVAPE-VFKIEED-FGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 163 CiGCg~C~~vap~-vF~iddd-~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
|++|+.|...||. .+.++.. .|...++...+........++.||++||.+...
T Consensus 106 ~~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~~ 160 (163)
T PRK10194 106 SVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEYL 160 (163)
T ss_pred CCCcCcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEeccc
Confidence 3789999999983 3444432 122111111112224556799999999998654
No 151
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=89.67 E-value=0.14 Score=47.94 Aligned_cols=19 Identities=42% Similarity=1.018 Sum_probs=11.1
Q ss_pred cccCcccccCCCCccCCCC
Q 019589 156 VFVDEFSCIGCKNCNNVAP 174 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap 174 (338)
+.+|...|+||+.|...||
T Consensus 125 v~id~~~CigC~~Cv~aCP 143 (244)
T PRK14993 125 VVVDNKRCVGCAYCVQACP 143 (244)
T ss_pred EEEcHHHCCCHHHHHHhcC
Confidence 4455566666666666665
No 152
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=89.58 E-value=0.12 Score=36.25 Aligned_cols=13 Identities=46% Similarity=1.298 Sum_probs=6.7
Q ss_pred cccCCCCccCCCC
Q 019589 162 SCIGCKNCNNVAP 174 (338)
Q Consensus 162 ~CiGCg~C~~vap 174 (338)
.|+||+.|+.++|
T Consensus 1 ~C~~C~~C~~~CP 13 (52)
T PF12838_consen 1 KCIGCGACVEACP 13 (52)
T ss_dssp C-SS--HHHHH-T
T ss_pred CCCCcCchHHhcC
Confidence 4899999965555
No 153
>PRK07118 ferredoxin; Validated
Probab=89.29 E-value=0.2 Score=47.93 Aligned_cols=61 Identities=25% Similarity=0.408 Sum_probs=42.4
Q ss_pred CccccCcccccCCCCccCCCC-ccceeccccCceeecc---CCC---------CHHHHHHHHHhCCCCcEEEec
Q 019589 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYN---QCG---------INEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~---q~g---------~~e~v~~Av~~CP~~aI~~~~ 214 (338)
....+|...|++|+.|...|| ..+.+.+......+.- ..+ ..-.....+..||++||.+.+
T Consensus 161 g~~~id~~~C~~Cg~Cv~aCP~~ai~~~~~~~~v~v~c~~~~~g~~~~~~~~~~Ci~Cg~Cv~~CP~~AI~~~~ 234 (280)
T PRK07118 161 GLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMEN 234 (280)
T ss_pred CeEEEChhhCcChhHHHHhcCccceeeeccccceeeeeeccccccccccccccccccchHHHhhCCcCcEEEeC
Confidence 456788999999999999999 6777776544433321 111 112345789999999999865
No 154
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.16 E-value=0.18 Score=53.58 Aligned_cols=66 Identities=29% Similarity=0.555 Sum_probs=41.2
Q ss_pred ccccCcccccCCCCccCCCCc-cceeccccCceeeccCCCC-HHHHHHHHHhCCCCcEEEecCcchhhhH
Q 019589 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGI-NEFVQQAIESCPVDCIHRTSAQQLSLLE 222 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~-vF~iddd~G~a~v~~q~g~-~e~v~~Av~~CP~~aI~~~~~~~~~~Le 222 (338)
.+.+|...|++|+.|...||. .+.+.++ ....-...+. ......++..||++||.+.+...+..+.
T Consensus 79 ~v~~d~~~C~gC~~C~~~CP~~ai~~~~~--~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~~~ 146 (639)
T PRK12809 79 SVQLDEQKCIGCKRCAIACPFGVVEMVDT--IAQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIK 146 (639)
T ss_pred ceecChhhCcchhhHhhhcCCCCEEccCC--CcccccCCcccCCCCChhhhhCccceEEEechHHHHHHH
Confidence 456789999999999999994 4444332 1110001111 0112368999999999998765554433
No 155
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=88.70 E-value=0.13 Score=48.49 Aligned_cols=54 Identities=20% Similarity=0.450 Sum_probs=33.4
Q ss_pred ccccCCCCccCCCC-ccceeccc-----cCceeeccCCCCHHHHH--HHHHhCCCCcEEEec
Q 019589 161 FSCIGCKNCNNVAP-EVFKIEED-----FGRARVYNQCGINEFVQ--QAIESCPVDCIHRTS 214 (338)
Q Consensus 161 ~~CiGCg~C~~vap-~vF~iddd-----~G~a~v~~q~g~~e~v~--~Av~~CP~~aI~~~~ 214 (338)
..|++|+.|+..|| +++.+... .|............... .++..||++||.+..
T Consensus 59 ~~Ci~Cg~Cv~aCP~~aI~~~~~~~~~~~g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 59 SACIRCGLCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred hhCcCchHHHHhCCccccCccccccccccCCceeeecCCcCcCCCCCchhhccCccceEeec
Confidence 78999999999998 45554321 12222211122233333 489999999998753
No 156
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=88.54 E-value=0.15 Score=55.59 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=38.6
Q ss_pred ccccCcccccCCCCccCCCCcc-----ceeccccCcee-----------------------eccCC---CCHHHHHHHHH
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRAR-----------------------VYNQC---GINEFVQQAIE 203 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-----F~iddd~G~a~-----------------------v~~q~---g~~e~v~~Av~ 203 (338)
.+..|...||.|+.|+.+|+++ +.+..+.+.+. +-... .++..+-++++
T Consensus 135 ~I~~D~~rCI~C~RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~ 214 (819)
T PRK08493 135 KINYDPSLCIVCERCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIA 214 (819)
T ss_pred cEEechhhcccccHHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHHH
Confidence 5778999999999999999864 22222222211 00111 12334457899
Q ss_pred hCCCCcEEEec
Q 019589 204 SCPVDCIHRTS 214 (338)
Q Consensus 204 ~CP~~aI~~~~ 214 (338)
.|||.||...+
T Consensus 215 VCPvGAL~~k~ 225 (819)
T PRK08493 215 VCPVGALSSSD 225 (819)
T ss_pred hCCCCccccCc
Confidence 99999998764
No 157
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=88.15 E-value=0.13 Score=49.85 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=37.6
Q ss_pred cccCcccccCCCCccCCCCcc--ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 156 VFVDEFSCIGCKNCNNVAPEV--FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~v--F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
..+|.+.|++|+.|...||.. ..+..+.+. +.........+-.++..||++||....
T Consensus 164 ~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~--~~id~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 164 PQYDADRCIGCGACVKVCKKKAVGALSFENYK--VVRDHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred CceeCccCCcchHHHHhcChhhcCceeccCCe--EEeCCCcCcCcchhhhhCCHhhcccCc
Confidence 357889999999999999952 222222232 222333445566789999999997654
No 158
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=87.96 E-value=0.23 Score=48.16 Aligned_cols=18 Identities=33% Similarity=0.794 Sum_probs=8.9
Q ss_pred ccCcccccCCCCccCCCC
Q 019589 157 FVDEFSCIGCKNCNNVAP 174 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap 174 (338)
.+|...|+||+.|...||
T Consensus 158 ~ID~ekCiGCg~Cv~ACP 175 (321)
T TIGR03478 158 LVDQERCKGYRYCVEACP 175 (321)
T ss_pred EECHHHCcchHHHHHhCC
Confidence 344445555555555554
No 159
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=87.42 E-value=0.13 Score=55.69 Aligned_cols=60 Identities=18% Similarity=0.404 Sum_probs=41.2
Q ss_pred CccccCcccccCCCCccCCCCcc-----ceeccccCceeeccCCC---CHHHHHHHHHhCCCCcEEEe
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~v-----F~iddd~G~a~v~~q~g---~~e~v~~Av~~CP~~aI~~~ 213 (338)
..+..|...||-|+.|+.+|.++ +.+..+....++....+ +.+.+-++|+.|||.||.-.
T Consensus 137 p~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 137 PLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSK 204 (776)
T ss_pred cceeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCccccccc
Confidence 35667999999999999988543 55555544444433211 23456688999999999854
No 160
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=87.10 E-value=0.25 Score=56.07 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=38.5
Q ss_pred ccCcccccCCCCccCCCCcc-cee---ccc-------------------cCce-eeccCCCCHHHHHHHHHhCCC--CcE
Q 019589 157 FVDEFSCIGCKNCNNVAPEV-FKI---EED-------------------FGRA-RVYNQCGINEFVQQAIESCPV--DCI 210 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~v-F~i---ddd-------------------~G~a-~v~~q~g~~e~v~~Av~~CP~--~aI 210 (338)
.++...|++|+.|..+||.. +.. ++. .+.. .+.....++..+..|++.||+ .||
T Consensus 679 ~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~Al 758 (1165)
T TIGR02176 679 VWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKAL 758 (1165)
T ss_pred eeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCccc
Confidence 45889999999999999833 221 100 0000 111224456678889999999 499
Q ss_pred EEecCc
Q 019589 211 HRTSAQ 216 (338)
Q Consensus 211 ~~~~~~ 216 (338)
.++...
T Consensus 759 ~m~~~~ 764 (1165)
T TIGR02176 759 VMQPLA 764 (1165)
T ss_pred cccchh
Confidence 987554
No 161
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=86.99 E-value=0.78 Score=45.87 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=37.2
Q ss_pred CccccCcccccCCCCcc--CCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 154 DHVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~--~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
....++...|++|+.|. .+||..- +..+ . .++ ...+..+-.+++.||.+||.+...
T Consensus 295 ~~p~id~dkCi~Cg~C~~~~aCPt~A-I~~~-~---~Id-~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 295 VRPKYNPERCENCDPCLVEEACPVPA-IKKD-G---TLN-TEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred eeEEEchhhCcCCCCCcCCcCCCHhh-Eecc-c---eeC-hHhCcChHHHHhhCCccceEEeCC
Confidence 34567889999999995 7888432 2222 1 121 123345668899999999998644
No 162
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=86.97 E-value=0.2 Score=44.83 Aligned_cols=31 Identities=35% Similarity=0.757 Sum_probs=26.0
Q ss_pred CCccccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
+....|.++.|.||+.| |..|||+||.+...
T Consensus 137 ~~mhtv~~dlCTGC~lC--------------------------------va~CPtdci~m~~~ 167 (198)
T COG2878 137 KAMHTVIADLCTGCDLC--------------------------------VAPCPTDCIEMQPV 167 (198)
T ss_pred hhHHHHHHHHhcCCCcc--------------------------------cCCCCCCceeeeec
Confidence 34556788999999999 99999999988644
No 163
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=86.75 E-value=0.4 Score=54.06 Aligned_cols=56 Identities=32% Similarity=0.619 Sum_probs=40.0
Q ss_pred CCCCccccCcccccCCCCccC--CCCccceeccccCceeeccCCCCHHHHHHHHH-hCCC
Q 019589 151 CPKDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV 207 (338)
Q Consensus 151 ~p~~~v~vDe~~CiGCg~C~~--vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~-~CP~ 207 (338)
.|...++||+..|.|||.|.. -|+-+.-.+.+||+.+.++|. .+...-.|++ -||.
T Consensus 647 ~p~~r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idqs-~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 647 DPARRVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQS-SCNKDFSCVKGFCPS 705 (1186)
T ss_pred CCCccEEEcccccCCchhhhhccCCceeeeccccCCccEEECHh-HCCCccccccCCCCC
Confidence 344589999999999999965 477777778888987777761 1111234476 8987
No 164
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=86.63 E-value=0.46 Score=50.04 Aligned_cols=51 Identities=31% Similarity=0.559 Sum_probs=35.8
Q ss_pred CccccCcccccCCCCccC--CCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcE
Q 019589 154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCI 210 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~--vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI 210 (338)
..+.+|...|++|+.|.. .||. +..++ +.. .++. .+..+-.+++.||.+||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~-~~~~~--~~~-~i~~--~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPA-IEPED--KEA-VIDP--LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCC-ccccC--Ccc-eeCC--CCcCHHHHHhhCccccC
Confidence 456789999999999999 8983 22222 222 2222 35567789999999987
No 165
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=86.56 E-value=0.2 Score=55.00 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=39.1
Q ss_pred ccccCcccccCCCCccCCCCcc-----ceeccccCceeeccC---CCCHHHHHHHHHhCCCCcEEEec
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-----F~iddd~G~a~v~~q---~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
.+..|...||-|+.|+.+|.++ +.+....+...+-.. .-+.+.+-.+|+.|||.||.-..
T Consensus 143 ~i~~d~~rCi~C~rCVr~c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 143 FISHEMNRCIACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred ceEecCCcCccccHHHHHHHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccccc
Confidence 4678999999999999998644 444333233322211 11334566789999999997543
No 166
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=86.48 E-value=0.17 Score=55.22 Aligned_cols=58 Identities=21% Similarity=0.466 Sum_probs=38.7
Q ss_pred ccccCcccccCCCCccCCCCcc-----ceeccccCceeeccCCC---CHHHHHHHHHhCCCCcEEE
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHR 212 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-----F~iddd~G~a~v~~q~g---~~e~v~~Av~~CP~~aI~~ 212 (338)
.+..|...||-|+.|+.+|.++ +.+..+....++....+ +.+.+-++|+.|||.||.-
T Consensus 144 ~i~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~ 209 (797)
T PRK07860 144 QVLLDRERCVLCARCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTG 209 (797)
T ss_pred ceeecccccccCcHHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCcccccc
Confidence 4678999999999999988543 44445544444432211 1123457799999999973
No 167
>PRK07118 ferredoxin; Validated
Probab=85.93 E-value=0.52 Score=45.11 Aligned_cols=56 Identities=25% Similarity=0.484 Sum_probs=38.7
Q ss_pred cCcccccCCCCccCCCC-ccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcc
Q 019589 158 VDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQ 217 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~ 217 (338)
++...|++|+.|...|| +.+.+++ +...+- .+.....-.+++.||+.||.+.....
T Consensus 210 ~~~~~Ci~Cg~Cv~~CP~~AI~~~~--~~~vId--~~~C~~Cg~C~~~CP~~AI~~~~~~~ 266 (280)
T PRK07118 210 VCEVGCIGCGKCVKACPAGAITMEN--NLAVID--QEKCTSCGKCVEKCPTKAIRILNKPP 266 (280)
T ss_pred ccccccccchHHHhhCCcCcEEEeC--CcEEEc--CCcCCCHHHHHHhCCccccEeecccc
Confidence 34678999999999999 5566654 333321 22223456789999999999986533
No 168
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=85.89 E-value=0.21 Score=53.51 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=39.4
Q ss_pred ccccCcccccCCCCccCCCCcc-----ceeccccCceeeccCCC---CHHHHHHHHHhCCCCcEEEe
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v-----F~iddd~G~a~v~~q~g---~~e~v~~Av~~CP~~aI~~~ 213 (338)
.+..|...||-|+.|+.+|.++ +.+..+....++....+ +.+.+-++++.|||.||.-.
T Consensus 139 ~i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k 205 (687)
T PRK09130 139 LVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSK 205 (687)
T ss_pred cEEEecccCCcccHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCcccccc
Confidence 4667889999999999888554 44444444444432211 22455678999999999743
No 169
>PRK13795 hypothetical protein; Provisional
Probab=85.17 E-value=0.36 Score=51.33 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=38.1
Q ss_pred cccCcccccCCCCccCCCCc-cceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEe
Q 019589 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~ 213 (338)
+.++...|++|+.|...||. .+.++++. ....+ ..+.+..+..++..||+.+|...
T Consensus 576 ~v~~~~~C~~Cg~C~~~CP~~ai~~~~~~-~~~~i-d~~~C~~Cg~C~~aCP~~a~~~~ 632 (636)
T PRK13795 576 LLRRAAECVGCGVCVGACPTGAIRIEEGK-RKISV-DEEKCIHCGKCTEVCPVVKYKDK 632 (636)
T ss_pred EEEccccCCCHhHHHHhCCcccEEeecCC-ceEEe-chhhcCChhHHHhhcCCCeeEee
Confidence 45567899999999999994 45555432 11122 22334456789999999999763
No 170
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=84.94 E-value=0.2 Score=50.87 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=35.4
Q ss_pred ccccCcccccCCCCccCCCC-ccceeccccCceeeccCCCCH-HHHH-----HHHHhCCCCcEEE
Q 019589 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGIN-EFVQ-----QAIESCPVDCIHR 212 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~-e~v~-----~Av~~CP~~aI~~ 212 (338)
.+.+|.+.|+||+.|...|| ..-.++.+.|.+. ...-+ +.+. .+|++||+.|+.+
T Consensus 208 iV~ID~dkCiGCg~CV~ACPygAI~~n~~~g~~~---KCd~C~~Rie~G~pPaCVeaCP~~Ar~f 269 (492)
T TIGR01660 208 IVLIDQDKCRGWRMCISGCPYKKIYFNWKTGKSE---KCIFCYPRIEAGQPTVCSETCVGRIRYL 269 (492)
T ss_pred eEEEehhhccChHHHHHhCCCCCcEecCCCCccc---cCCCChhHHhCCCCCcchhhcChhhhhh
Confidence 45689999999999999999 3334444434222 22111 1111 5899999999654
No 171
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=84.53 E-value=0.58 Score=52.81 Aligned_cols=55 Identities=31% Similarity=0.608 Sum_probs=38.9
Q ss_pred CCCccccCcccccCCCCccC--CCCccceeccccCceeeccCCCCHHHHHHHHH-hCCC
Q 019589 152 PKDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV 207 (338)
Q Consensus 152 p~~~v~vDe~~CiGCg~C~~--vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~-~CP~ 207 (338)
|...++||+..|.|||.|.. -||-+--.+.+||+.+.++|. .+...-.|++ -||.
T Consensus 634 p~~r~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Idqs-~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 634 PAKRVFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRIDQS-SCNKDFSCLKGFCPS 691 (1165)
T ss_pred CCceEEEcccccCCchhhhhccCCcceeeccccCCccEEECHh-HCCCccccccCCCCC
Confidence 34589999999999999965 467776677788987777761 1112223477 8887
No 172
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=84.09 E-value=0.48 Score=49.70 Aligned_cols=58 Identities=24% Similarity=0.445 Sum_probs=37.3
Q ss_pred ccccCcccccCCCCcc--CCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 155 HVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~--~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
..+||++.|.||+.|+ ..||-++-.++ + +...+++. .+..+-.+++.||.++|.-...
T Consensus 571 ~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~-~k~~id~~-~C~GCg~C~~iCP~~a~~~~~~ 630 (640)
T COG4231 571 KYFVDEEKCTGCGDCIVLSGCPSIEPDPT-F-KKARIDPS-SCNGCGSCVEVCPSFAIKEGGE 630 (640)
T ss_pred CceechhhcCCcHHHHhhcCCceEeecCC-C-Cceeeccc-ccccchhhhhcCchhheecccc
Confidence 4789999999999997 34666665554 3 33444440 1222234477799999976544
No 173
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=83.53 E-value=0.67 Score=32.30 Aligned_cols=16 Identities=31% Similarity=0.908 Sum_probs=9.5
Q ss_pred CccccCcccccCCCCc
Q 019589 154 DHVFVDEFSCIGCKNC 169 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C 169 (338)
..+.++...|++|+.|
T Consensus 29 ~~~~~~~~~C~~C~~C 44 (52)
T PF12838_consen 29 PKMVIDPDKCTGCGAC 44 (52)
T ss_dssp TTSEETGGG----SHH
T ss_pred eEEEEechhCcCcChh
Confidence 4556789999999999
No 174
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=83.38 E-value=0.42 Score=44.31 Aligned_cols=54 Identities=20% Similarity=0.411 Sum_probs=37.4
Q ss_pred ccccCcccccCCCCccCCCC-ccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEE
Q 019589 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap-~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~ 212 (338)
...+|...|++|+.|...|| ..+.++++ ... +. .........++..||+++|.-
T Consensus 168 ~~~id~~~C~~C~~C~~aCP~~ai~~~~~--~~~-i~-~~~C~~C~~C~~~CP~~~~~~ 222 (228)
T TIGR03294 168 TKVVNQGLCMGCGTCAAACPTRAIEMEDG--RPN-VN-RDRCIKCGACYVQCPRAFWPE 222 (228)
T ss_pred eEEEChhhCcChhHHHHhCCHhhEEEeCC--cEE-EC-hhhccCHHHHHHHcCCCCcch
Confidence 34688999999999999999 44555443 222 22 223345678899999998853
No 175
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=82.64 E-value=0.72 Score=52.11 Aligned_cols=55 Identities=29% Similarity=0.576 Sum_probs=37.6
Q ss_pred CCCccccCcccccCCCCccC--CCCccceeccccCceeeccCCCCHHHHHHHHH-hCCC
Q 019589 152 PKDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV 207 (338)
Q Consensus 152 p~~~v~vDe~~CiGCg~C~~--vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~-~CP~ 207 (338)
|...++||+..|.|||.|.. -|+-+--.+.+||+.+.++|. .+...-.|++ .||.
T Consensus 620 p~~~~~In~~vCegCg~C~~~s~C~ai~~~~t~~grK~~Id~s-~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 620 PDRRLFINEAVCEGCGDCGVQSNCLSVEPVETPFGRKRRIDQS-SCNKDFSCVNGFCPS 677 (1159)
T ss_pred CCeeEEEcccccCCchhhhhccCCcceeeccccCCccEEECHH-HCCCccccccCCCCC
Confidence 34588999999999999965 466666667778887767661 1111223466 8886
No 176
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=82.57 E-value=0.83 Score=47.63 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=36.1
Q ss_pred cccCcccccCC------CCccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 156 VFVDEFSCIGC------KNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 156 v~vDe~~CiGC------g~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
+..+...|+.| +.|..+||.. +...++ +....+ ..+....+..++..||++||.++.
T Consensus 499 ~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~-~~~~~i-~~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 499 ARQEAARCLSCGNCFECDNCYGACPQDAIIKLGP-GRRYHF-DYDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred hhhhcccCcccccccccchhhhhCChhheeeecC-CceEEE-ecccCcChhHHHhhcCcCceEecc
Confidence 34556667666 7899999854 444332 221222 223445577889999999999864
No 177
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=82.51 E-value=0.43 Score=46.17 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=18.9
Q ss_pred HHHHhCCCCcEEEecCcchhhhHHHHH
Q 019589 200 QAIESCPVDCIHRTSAQQLSLLEDEMR 226 (338)
Q Consensus 200 ~Av~~CP~~aI~~~~~~~~~~Le~~~~ 226 (338)
..++.||++||.|.. ..+.+....|-
T Consensus 179 ~cv~~C~~gAI~~~~-~~l~id~~~Ci 204 (317)
T COG2221 179 KCVKVCPTGAITWDG-KKLKIDGSKCI 204 (317)
T ss_pred hHHHhCCCCceeecc-ceEEEehhhcc
Confidence 449999999999976 55666666554
No 178
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=81.59 E-value=1.6 Score=42.47 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=42.1
Q ss_pred CCCCccccCcccccCCC--CccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 151 CPKDHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 151 ~p~~~v~vDe~~CiGCg--~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
.+...++.....|..|. .|+.+||.. +...++.|...+ ++ +.......++..||.+||.+...
T Consensus 119 ~~~~~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~I-D~-ekCiGCg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 119 YPNNYYFYLPRICNHCTNPACLAACPTGAIYKREEDGIVLV-DQ-ERCKGYRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred CCCceEEEecccCCCCCCccchhhCCcCcEEEecCCCeEEE-CH-HHCcchHHHHHhCCCCCcEecCC
Confidence 34445667889999999 799999944 333444454332 22 22334678899999999998654
No 179
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=81.13 E-value=0.91 Score=41.65 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=12.6
Q ss_pred HHHHHhCCCC--cEEEecC
Q 019589 199 QQAIESCPVD--CIHRTSA 215 (338)
Q Consensus 199 ~~Av~~CP~~--aI~~~~~ 215 (338)
-.++..||+. ||.+...
T Consensus 181 G~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 181 GTCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred chhhHhCCCCCCeEEEeeh
Confidence 3459999986 8887654
No 180
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=80.66 E-value=0.74 Score=47.29 Aligned_cols=19 Identities=42% Similarity=0.850 Sum_probs=15.5
Q ss_pred ccccCcccccCCCCccCCCC
Q 019589 155 HVFVDEFSCIGCKNCNNVAP 174 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap 174 (338)
...+|++.|+||+.|.. ||
T Consensus 555 ~a~vde~~C~gC~~C~~-Cp 573 (622)
T COG1148 555 VATVDEDKCTGCGICAE-CP 573 (622)
T ss_pred ccccchhhhcCCcceee-CC
Confidence 34689999999999966 55
No 181
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=80.22 E-value=0.71 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=16.8
Q ss_pred CccccCcccccCCCCccCCCC
Q 019589 154 DHVFVDEFSCIGCKNCNNVAP 174 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap 174 (338)
-...++...|++|+.|..+||
T Consensus 5 ~~~vi~~~~C~gCg~C~~~CP 25 (341)
T PRK09326 5 IAEVIEYDVCTACGACEAVCP 25 (341)
T ss_pred cccEECcccCcChHHHHHhCC
Confidence 344678899999999977766
No 182
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=80.10 E-value=1.2 Score=24.28 Aligned_cols=14 Identities=50% Similarity=1.243 Sum_probs=11.2
Q ss_pred ccccCCCCccCCCC
Q 019589 161 FSCIGCKNCNNVAP 174 (338)
Q Consensus 161 ~~CiGCg~C~~vap 174 (338)
..|++|+.|+.++|
T Consensus 2 ~~C~~C~~C~~~Cp 15 (17)
T PF12800_consen 2 ERCIGCGSCVDVCP 15 (17)
T ss_dssp CCCTTSSSSTTTST
T ss_pred CcCCCCchHHhhcc
Confidence 46999999966665
No 183
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=79.08 E-value=1 Score=36.19 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=17.0
Q ss_pred CCccccCcccccCCCCccCCC
Q 019589 153 KDHVFVDEFSCIGCKNCNNVA 173 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~va 173 (338)
...+.+|.+.|++||.|..+|
T Consensus 53 ~G~V~vd~e~CigCg~C~~~C 73 (95)
T PRK15449 53 DGSVRFDYAGCLECGTCRILG 73 (95)
T ss_pred CCCEEEcCCCCCcchhhhhhc
Confidence 457889999999999995444
No 184
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=78.29 E-value=0.93 Score=43.18 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=27.6
Q ss_pred ccccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
...+|...|+.||.|..+|.-.--.-.. |...++++ ...+.+--+.-.||.+||..++
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~~~-~~~~~~~~-~lC~GCgaC~~~CP~~AI~~~~ 120 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVVLP-GGKPVLNP-DLCEGCGACSIVCPEPAIEEEP 120 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEEcC-CCceecCc-ccccCcccceeeCCCccccccc
Confidence 3345666677777777777522111000 11111111 1122233347788888887653
No 185
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=78.14 E-value=1.7 Score=31.61 Aligned_cols=20 Identities=45% Similarity=0.866 Sum_probs=13.5
Q ss_pred ccccCcccccCCCCccCCCC
Q 019589 155 HVFVDEFSCIGCKNCNNVAP 174 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap 174 (338)
.+.++.+.|+||+.|..++|
T Consensus 33 ~~~v~~~~C~GCg~C~~~CP 52 (59)
T PF14697_consen 33 KVPVNPDKCIGCGLCVKVCP 52 (59)
T ss_dssp SSECE-TT--S-SCCCCCSS
T ss_pred eEEeccccCcCcCcccccCC
Confidence 34577899999999999999
No 186
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=77.99 E-value=1.2 Score=43.09 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=17.4
Q ss_pred CCccccCcccccCCCCccCCCC
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAP 174 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap 174 (338)
.....++++.|+.|+.|..+||
T Consensus 185 ~~~p~v~e~kc~~c~~cv~~cp 206 (354)
T COG2768 185 DEKPVVVEEKCYDCGLCVKICP 206 (354)
T ss_pred ccCceeeeecccccchhhhhCC
Confidence 3456689999999999966665
No 187
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=77.69 E-value=2.3 Score=41.31 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCC----ChhHHHHHHHHHHHHHHcCChhHhhhhhhh
Q 019589 81 DATPEQIKKAYYNCMKACHPDLSGD----DPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (338)
Q Consensus 81 ~as~~eIk~aYr~l~~~~HPD~~~~----~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (338)
.++..+|..+|+...+..||++... .....+.|+.|.+||.||++...|...|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 3567889999999999999998752 124677899999999999997666666654
No 188
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=77.66 E-value=1 Score=42.93 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCcEEEecCcchhhhHHHHH
Q 019589 197 FVQQAIESCPVDCIHRTSAQQLSLLEDEMR 226 (338)
Q Consensus 197 ~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~ 226 (338)
.+-.+.+.|+-+||.|.+.....+-+++|.
T Consensus 73 ~CG~C~~vC~f~Ai~~~~~~~~~~~~~lC~ 102 (284)
T COG1149 73 RCGKCAEVCRFGAIVVLPGGKPVLNPDLCE 102 (284)
T ss_pred ccCcHHHhCCCCeEEEcCCCceecCccccc
Confidence 344569999999999977767666688988
No 189
>PF13446 RPT: A repeated domain in UCH-protein
Probab=77.59 E-value=3.6 Score=29.86 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHH
Q 019589 70 DDYYAVLGLLPDATPEQIKKAYYNCMK 96 (338)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~aYr~l~~ 96 (338)
.+.|++|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999887
No 190
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=77.47 E-value=0.62 Score=41.31 Aligned_cols=20 Identities=30% Similarity=0.865 Sum_probs=15.6
Q ss_pred ccccCcccccCCCCccCCCC
Q 019589 155 HVFVDEFSCIGCKNCNNVAP 174 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap 174 (338)
.+++|...|+||+.|...|+
T Consensus 4 ~~~~d~~~C~gC~~C~~aC~ 23 (181)
T PRK10330 4 FIIADASKCIGCRTCEVACV 23 (181)
T ss_pred EEEeCcccCcCccHHHHHHH
Confidence 46678888888888887776
No 191
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=76.96 E-value=1.3 Score=41.78 Aligned_cols=27 Identities=26% Similarity=0.652 Sum_probs=23.0
Q ss_pred cccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCC--cEEEec
Q 019589 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVD--CIHRTS 214 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~--aI~~~~ 214 (338)
..+|.+.|+|||.| +..||++ ||.+..
T Consensus 179 p~Id~d~C~gCG~C--------------------------------~~aCP~~~~AI~v~p 207 (254)
T PRK09476 179 PTVHSDACTGCGKC--------------------------------EKACVLEKAAIKVLP 207 (254)
T ss_pred eEEeHHHCcCcChh--------------------------------hHhcCCCcceEEEeh
Confidence 45788999999999 9999998 887653
No 192
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=76.44 E-value=4.9 Score=36.42 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHH-HcCChhH
Q 019589 79 LPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA-VLSDPVQ 128 (338)
Q Consensus 79 ~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~-vLsdp~~ 128 (338)
+++||.+||.+|+.++..+|- + .++.-..|..||+ ||++.-+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----g---d~~~~~~IEaAYD~ILM~rL~ 43 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----G---DEKSREAIEAAYDAILMERLR 43 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----C---CHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999982 2 2344467999997 4555443
No 193
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=75.98 E-value=5.7 Score=32.82 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCChh----HHHHHHHHHHHHHHcCCh
Q 019589 80 PDATPEQIKKAYYNCMKACHPDLSGDDPE----TTNFCMFINEVYAVLSDP 126 (338)
Q Consensus 80 ~~as~~eIk~aYr~l~~~~HPD~~~~~~~----a~~~f~~i~~Ay~vLsdp 126 (338)
...+..+++.+.|.+-++.|||.....|+ .++-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34567789999999999999999877664 345566666666666554
No 194
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=75.23 E-value=0.63 Score=49.82 Aligned_cols=68 Identities=16% Similarity=0.342 Sum_probs=44.3
Q ss_pred cCcccccCCCCccCCCCcc-----ceeccccCceeeccCCC---CHHHHHHHHHhCCCCcEEEecCcchhhhHHHHH
Q 019589 158 VDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRTSAQQLSLLEDEMR 226 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~v-----F~iddd~G~a~v~~q~g---~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~ 226 (338)
.|...||-|+.|+-+|.++ +.+-++.+...+...++ ..+..=++|+.|||.||.-... +...=.+.+.
T Consensus 141 ~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~-~~~ar~wEl~ 216 (693)
T COG1034 141 YDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPF-AFTARKWELK 216 (693)
T ss_pred cccccceechhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccccChH-Hhhhccchhc
Confidence 7889999999999998655 33444434444433221 2245556799999999987655 4444445554
No 195
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=74.48 E-value=1.4 Score=43.28 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=6.5
Q ss_pred HHhCCCCcEE
Q 019589 202 IESCPVDCIH 211 (338)
Q Consensus 202 v~~CP~~aI~ 211 (338)
+..||..||.
T Consensus 223 i~~CP~~a~~ 232 (341)
T TIGR02066 223 YTMCPAMPIF 232 (341)
T ss_pred HHhCchhhcc
Confidence 6677766664
No 196
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=73.00 E-value=1.6 Score=48.81 Aligned_cols=57 Identities=19% Similarity=0.403 Sum_probs=37.9
Q ss_pred CcccccC----CCCccCCCCccc--eecc-cc-CceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 159 DEFSCIG----CKNCNNVAPEVF--KIEE-DF-GRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 159 De~~CiG----Cg~C~~vap~vF--~idd-d~-G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
+...|.+ |+.|+.+||..- .++. .+ +....+.....+..+-.++..||++|+.+..+
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk 943 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKDK 943 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCcccceee
Confidence 3489997 999999999763 2321 11 11222222223666678899999999999877
No 197
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=72.96 E-value=0.39 Score=43.85 Aligned_cols=72 Identities=19% Similarity=0.340 Sum_probs=41.8
Q ss_pred CCccccCcccccCCCCccCCCCccceeccccCc----eeeccC---CCCHH--------HHH-----HHHHhCCCCcEEE
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGR----ARVYNQ---CGINE--------FVQ-----QAIESCPVDCIHR 212 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap~vF~iddd~G~----a~v~~q---~g~~e--------~v~-----~Av~~CP~~aI~~ 212 (338)
+...++|...||||..|...|.+... +...|. ..+..- .+... ... -.+..|||+|+++
T Consensus 10 ~~~~~~D~~rCiGC~aC~~AC~~~n~-~~~~g~~~~r~~v~~~~~~~~~~~~~~~~~~~~C~HC~~ppCv~vCPtgA~~k 88 (203)
T COG0437 10 RYAFVIDSSRCIGCKACVVACKEEND-RLPVGNSVFRRYVNYVEGDWGSGTVEYYYLSISCMHCEDPPCVKVCPTGALFK 88 (203)
T ss_pred eeEEEEecccccCcHHHHHHHHHhcc-CCCCCcceeeEEEEecCCcCCCCcceEEEecccccCCCCCcccccCCCcceEE
Confidence 34457899999999999877755442 222231 111111 11100 001 2689999999999
Q ss_pred ec-CcchhhhHHHH
Q 019589 213 TS-AQQLSLLEDEM 225 (338)
Q Consensus 213 ~~-~~~~~~Le~~~ 225 (338)
.. .+-..+-.++|
T Consensus 89 ~~~dGiV~vd~d~C 102 (203)
T COG0437 89 REEDGIVLVDKDLC 102 (203)
T ss_pred ecCCCEEEecCCcc
Confidence 86 55555555554
No 198
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.95 E-value=1.5 Score=46.75 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=26.9
Q ss_pred cccccCCCC--ccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 160 EFSCIGCKN--CNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 160 e~~CiGCg~--C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
...|+.|+. |...||..-....+ +... ........+..++..||.+||.+...
T Consensus 53 ~~~C~~C~~~~C~~~CP~~ai~~~~-~~~~--id~~~C~~C~~C~~~CP~~ai~~~~~ 107 (654)
T PRK12769 53 AVTCHHCEDAPCARSCPNGAISHVD-DSIQ--VNQQKCIGCKSCVVACPFGTMQIVLT 107 (654)
T ss_pred CccCCCCCChhHhhhCCccceeccC-CeEE--EecccccCcChhcccCCccCeeeccc
Confidence 356666664 66666633211111 2211 11222234556777778777776543
No 199
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=68.00 E-value=2.1 Score=43.55 Aligned_cols=28 Identities=36% Similarity=0.930 Sum_probs=24.5
Q ss_pred cccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
.++.+..|||||.| |.-||-.||.+..-
T Consensus 45 ~~ise~lCigcgic--------------------------------vkkcpf~ai~iinl 72 (592)
T KOG0063|consen 45 AFISEELCIGCGIC--------------------------------VKKCPFEAIQIINL 72 (592)
T ss_pred chhhHhhhccccce--------------------------------eeccCcceEEecCC
Confidence 67889999999999 88999999988654
No 200
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=67.85 E-value=4 Score=38.26 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=35.8
Q ss_pred CcccccCCCC--ccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 159 DEFSCIGCKN--CNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 159 De~~CiGCg~--C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
....|++|.. |..+||.. +..++ .|... ++. ........++..||.+||.+...
T Consensus 96 ~~~~C~~C~~p~Cv~~CP~~Ai~~~~-~G~v~-id~-~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 96 LPRLCNHCDNPPCVPVCPVQATFQRE-DGIVV-VDN-KRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred cchhcCCcCCccCccccCCCCEEECC-CCCEE-EcH-HHCCCHHHHHHhcCCCCCEEeCC
Confidence 3678999997 99999944 33333 35322 222 12234567899999999998765
No 201
>PRK09898 hypothetical protein; Provisional
Probab=65.86 E-value=3.5 Score=37.48 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=37.9
Q ss_pred ccccCcccccCCC--CccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 155 HVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 155 ~v~vDe~~CiGCg--~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
.+.++...|.+|+ .|..+||.. +..++++|...+ +. .........+..||.++|.+..
T Consensus 115 ~~~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v~v-d~-~~CigC~~C~~aCP~~ai~~~~ 175 (208)
T PRK09898 115 DLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITV-DH-KRCIGCSACTTACPWMMATVNT 175 (208)
T ss_pred cEEEeCccCCCccCcchhhhCCcceEEeeccCCeEEe-cc-ccCCCcCcccccCCCCCCEecC
Confidence 3345677999998 799999944 455555564332 22 1122345678999999998753
No 202
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=64.53 E-value=3.5 Score=36.43 Aligned_cols=18 Identities=33% Similarity=0.966 Sum_probs=12.7
Q ss_pred cccCcccccCCCCccCCC
Q 019589 156 VFVDEFSCIGCKNCNNVA 173 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~va 173 (338)
+.++...|+||..|...|
T Consensus 5 i~~~~~~CigC~~Ce~aC 22 (165)
T COG1142 5 IIADPEKCIGCRTCEVAC 22 (165)
T ss_pred EEeCcccCCCccccHHHH
Confidence 566777788887775554
No 203
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=63.74 E-value=5.3 Score=38.31 Aligned_cols=56 Identities=14% Similarity=0.298 Sum_probs=36.8
Q ss_pred ccCcccccCCCC--ccCCCCc-c-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 157 FVDEFSCIGCKN--CNNVAPE-V-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 157 ~vDe~~CiGCg~--C~~vap~-v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
++....|..|+. |..+||. . +..++ .|...+ +. ........++..||.++|.+.+.
T Consensus 87 ~~~~~~C~hC~~p~Cv~aCP~~gA~~~~~-~G~V~i-d~-dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 87 LIRKDGCMHCREPGCLKACPAPGAIIQYQ-NGIVDF-DH-SKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred EECCccCCCCCCccccCCCCcCCeEEEcC-CCcEEE-eH-HHCCcchHHHhhCCCCCcEEcCC
Confidence 345677999998 9999995 4 44443 354332 22 11123456899999999999654
No 204
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=63.37 E-value=4.1 Score=39.51 Aligned_cols=20 Identities=35% Similarity=0.732 Sum_probs=15.0
Q ss_pred CccccCcccccCCCCccCCC
Q 019589 154 DHVFVDEFSCIGCKNCNNVA 173 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~va 173 (338)
+.+-+|...|+||+.|...|
T Consensus 214 ~~~~I~~~~ci~c~~c~~ac 233 (354)
T COG2768 214 KVVKIDYEKCIGCGQCMEAC 233 (354)
T ss_pred cceeechhhccchhhhhhhc
Confidence 45668889999999993333
No 205
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=62.83 E-value=5.9 Score=44.48 Aligned_cols=68 Identities=19% Similarity=0.367 Sum_probs=46.2
Q ss_pred cccCcccccCC----CCccCCCCccc--eec-----cccCceeeccCCCCHHHHHHHHHhCCCCcEEEecCcchhhhHHH
Q 019589 156 VFVDEFSCIGC----KNCNNVAPEVF--KIE-----EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDE 224 (338)
Q Consensus 156 v~vDe~~CiGC----g~C~~vap~vF--~id-----dd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~~~~~~Le~~ 224 (338)
+-.+...|.+| +.|+.+||..- .++ ..++...+ .+.+..+-.++..||+++=...++--|=..|.-
T Consensus 881 ~~~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~---~~~C~~CG~C~~~CP~~~~py~dk~t~f~~~~d 957 (1019)
T PRK09853 881 VAQEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVHL---DAMCNECGNCAQFCPWNGKPYKDKITLFSLEED 957 (1019)
T ss_pred ccccccccCCcccccchhhhhCCcccccccccCCcccCCceEEc---CccCccccchhhhCCCCCCcccccceEEcchhh
Confidence 34567899999 99999999643 222 12232222 344555667799999999988888777777774
Q ss_pred HH
Q 019589 225 MR 226 (338)
Q Consensus 225 ~~ 226 (338)
+.
T Consensus 958 ~~ 959 (1019)
T PRK09853 958 FE 959 (1019)
T ss_pred hh
Confidence 43
No 206
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=62.58 E-value=2.2 Score=45.54 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=28.4
Q ss_pred ccccCcccccCCCCccCCCCccceeccccCceeeccCCCCHHHHHHHHHhCCCCcE
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCI 210 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI 210 (338)
.+..|...||.||.|+.+|.++=... --.+-.+-..||+.|+
T Consensus 610 ~i~~D~~kCI~CgrCv~~C~ev~~~~--------------~~~~~~~~~~~~~~~~ 651 (652)
T PRK12814 610 DIRFEREKCVDCGICVRTLEEYGAEG--------------NTDIEVLAESCPTGAL 651 (652)
T ss_pred CeEeccccccCchHHHHHHHHhcccc--------------hhhhhhhhccCCcccC
Confidence 37789999999999998887552210 0112233567999886
No 207
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=62.42 E-value=2.6 Score=40.98 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.7
Q ss_pred HHhCCCCcEEEecCc
Q 019589 202 IESCPVDCIHRTSAQ 216 (338)
Q Consensus 202 v~~CP~~aI~~~~~~ 216 (338)
++.||++||+..+.+
T Consensus 214 ~~~CP~~Ai~~~~~p 228 (314)
T TIGR02486 214 ADECPSGAISKGGEP 228 (314)
T ss_pred HhhCCccccCCCCCC
Confidence 999999999887554
No 208
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=62.27 E-value=5.4 Score=41.20 Aligned_cols=59 Identities=22% Similarity=0.473 Sum_probs=38.2
Q ss_pred ccCcccccCCCCccCCCCccc--eeccccCceeec----cC---------CCCHHHHHHHHHhCCCCcEEEecCc
Q 019589 157 FVDEFSCIGCKNCNNVAPEVF--KIEEDFGRARVY----NQ---------CGINEFVQQAIESCPVDCIHRTSAQ 216 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~vF--~iddd~G~a~v~----~q---------~g~~e~v~~Av~~CP~~aI~~~~~~ 216 (338)
+|| +.|.|||.|..+||-.- +++...|..+.+ .| ....-.+-.+...||-.+|.+...+
T Consensus 221 yVd-d~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~ 294 (622)
T COG1148 221 YVD-DKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEP 294 (622)
T ss_pred ccc-ccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCC
Confidence 567 89999999999998532 223333444432 22 1122345578999999999887555
No 209
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=61.93 E-value=3.5 Score=30.89 Aligned_cols=18 Identities=39% Similarity=0.901 Sum_probs=13.2
Q ss_pred CcccccCCCCccCCCCcc
Q 019589 159 DEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 159 De~~CiGCg~C~~vap~v 176 (338)
....|+|||.|+.+||..
T Consensus 48 ~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred CCccCCCcChHhhhcCCC
Confidence 567799999995555543
No 210
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=60.31 E-value=8.6 Score=41.64 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=33.2
Q ss_pred ccCcccccCCCCccCCCCccceecccc-----Cceeec-cCCCCHHHHHHHHHhCCCCc
Q 019589 157 FVDEFSCIGCKNCNNVAPEVFKIEEDF-----GRARVY-NQCGINEFVQQAIESCPVDC 209 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~vF~iddd~-----G~a~v~-~q~g~~e~v~~Av~~CP~~a 209 (338)
..+...|++|+.|...||..+.+.+.. |....+ ........+..+++.||+++
T Consensus 361 ~~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 361 QELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HHhhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 345678999999999999775532111 110001 11233456778999999976
No 211
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=58.04 E-value=3.2 Score=39.78 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=9.3
Q ss_pred HHhCCCCcEE
Q 019589 202 IESCPVDCIH 211 (338)
Q Consensus 202 v~~CP~~aI~ 211 (338)
++.||+.||.
T Consensus 168 ~~aCPt~AI~ 177 (282)
T TIGR00276 168 IDACPTQALV 177 (282)
T ss_pred HHhcCccccc
Confidence 9999999997
No 212
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=57.47 E-value=5.5 Score=43.28 Aligned_cols=54 Identities=17% Similarity=0.424 Sum_probs=34.4
Q ss_pred ccccCcccccCCCCccCCCCccceecccc-----Cc-eeeccCCCCHHHHHHHHHhCCCC
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDF-----GR-ARVYNQCGINEFVQQAIESCPVD 208 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~iddd~-----G~-a~v~~q~g~~e~v~~Av~~CP~~ 208 (338)
.+......|++|+.|...||..+.+.+.. |. ..+....+.+..+..+++.||.+
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred HHhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCC
Confidence 44456789999999999999765442211 11 11111123456778899999985
No 213
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=57.45 E-value=4 Score=32.45 Aligned_cols=18 Identities=44% Similarity=0.868 Sum_probs=16.8
Q ss_pred cCcccccCCCCccCCCCc
Q 019589 158 VDEFSCIGCKNCNNVAPE 175 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~ 175 (338)
+|-+.|.|||.|..+||.
T Consensus 63 idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 63 IDYDYCKGCGICANVCPV 80 (91)
T ss_pred eEcccccCceechhhCCh
Confidence 789999999999999994
No 214
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=55.98 E-value=7.8 Score=39.41 Aligned_cols=52 Identities=27% Similarity=0.558 Sum_probs=31.4
Q ss_pred ccCcccccCCCCccCCCCccceecc-ccCc----e--eec-----------cCCCCHHHHHHHHHhCCCC
Q 019589 157 FVDEFSCIGCKNCNNVAPEVFKIEE-DFGR----A--RVY-----------NQCGINEFVQQAIESCPVD 208 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~vF~idd-d~G~----a--~v~-----------~q~g~~e~v~~Av~~CP~~ 208 (338)
+.+...|+.||.|..+||-...+.. .||. . .+. .....+..+..+.+.||+.
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVK 358 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCC
Confidence 4456889999999999986543322 1110 0 000 0123345677889999994
No 215
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=54.63 E-value=7.5 Score=33.67 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=36.5
Q ss_pred ccCcccccCCC--CccCCCCcc-ceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 157 FVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 157 ~vDe~~CiGCg--~C~~vap~v-F~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
......|++|+ .|..+||.. +..+.+.|...+ .. .........+..||.++|.+...
T Consensus 58 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~~~i-~~-~~C~~C~~C~~aCP~~ai~~~~~ 117 (161)
T TIGR02951 58 YYISISCNHCADPACVKNCPTGAMYKREEDGLVLV-DQ-DKCIGCRYCVWACPYGAPQYDPQ 117 (161)
T ss_pred EEcCccCCCcCCcchHHhCCCCCEEeecCCCcEEE-CH-HhCCCchHHHhhCCCCCcEEcCC
Confidence 34578899999 899999843 444323343222 21 11223456899999999998654
No 216
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=51.95 E-value=6.1 Score=41.73 Aligned_cols=24 Identities=33% Similarity=0.708 Sum_probs=20.5
Q ss_pred CccccCcccccCCCCccCCCCccc
Q 019589 154 DHVFVDEFSCIGCKNCNNVAPEVF 177 (338)
Q Consensus 154 ~~v~vDe~~CiGCg~C~~vap~vF 177 (338)
+.+.+|...|+||+.|.++||-.+
T Consensus 601 ~k~~id~~~C~GCg~C~~iCP~~a 624 (640)
T COG4231 601 KKARIDPSSCNGCGSCVEVCPSFA 624 (640)
T ss_pred CceeecccccccchhhhhcCchhh
Confidence 667889999999999999988543
No 217
>COG1146 Ferredoxin [Energy production and conversion]
Probab=51.68 E-value=6.4 Score=28.99 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.8
Q ss_pred CCccccCcccccCCCCccCCCCcc
Q 019589 153 KDHVFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 153 ~~~v~vDe~~CiGCg~C~~vap~v 176 (338)
...+.++.+.|++|+.|...||..
T Consensus 33 ~~~~~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 33 GKPVVARPEECIDCGLCELACPVG 56 (68)
T ss_pred cceeEeccccCccchhhhhhCCcc
Confidence 445778999999999999999976
No 218
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=51.38 E-value=8.6 Score=39.81 Aligned_cols=15 Identities=40% Similarity=0.950 Sum_probs=13.3
Q ss_pred cccCCCCccCCCCcc
Q 019589 162 SCIGCKNCNNVAPEV 176 (338)
Q Consensus 162 ~CiGCg~C~~vap~v 176 (338)
.||.|+.|..+||-.
T Consensus 366 sCi~C~~C~d~CP~~ 380 (529)
T COG4656 366 SCIRCSLCADACPVN 380 (529)
T ss_pred ccccHHHHHHhCccc
Confidence 899999999999854
No 219
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=49.67 E-value=7.3 Score=34.48 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.5
Q ss_pred ccccCcccccCCCCccCCCCcc
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v 176 (338)
...+|-..||-||.|.+.||-.
T Consensus 144 rYdIDmtkCIyCG~CqEaCPvd 165 (212)
T KOG3256|consen 144 RYDIDMTKCIYCGFCQEACPVD 165 (212)
T ss_pred eecccceeeeeecchhhhCCcc
Confidence 4457889999999999999844
No 220
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=47.48 E-value=9.7 Score=33.88 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.4
Q ss_pred ccccCcccccCCCCccCCCCcc
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v 176 (338)
+-.+|-..||.||.|+++||..
T Consensus 89 ~~~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 89 RPDINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred cceeccccccccCchhhhCchh
Confidence 4457889999999999999843
No 221
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=47.02 E-value=12 Score=34.22 Aligned_cols=14 Identities=36% Similarity=0.997 Sum_probs=11.4
Q ss_pred cccCccccc-----CCCCc
Q 019589 156 VFVDEFSCI-----GCKNC 169 (338)
Q Consensus 156 v~vDe~~Ci-----GCg~C 169 (338)
+.+|.+.|+ +|+.|
T Consensus 126 v~id~~~C~~~~g~~C~~C 144 (213)
T TIGR00397 126 VLVGHETCLNYKGLNCSIC 144 (213)
T ss_pred EEECCCCcccCCCCCcccc
Confidence 457788887 99999
No 222
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=44.03 E-value=8.4 Score=29.76 Aligned_cols=19 Identities=37% Similarity=0.947 Sum_probs=16.9
Q ss_pred ccCcccccCCCCccCCCCc
Q 019589 157 FVDEFSCIGCKNCNNVAPE 175 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~ 175 (338)
.++...|++|+.|..+||.
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~ 84 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPK 84 (91)
T ss_pred ecCCccCcChhhhhhhCCH
Confidence 4788999999999999984
No 223
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=42.20 E-value=12 Score=33.49 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=20.6
Q ss_pred ccCcccccCCCCccCCCCc-cceecccc
Q 019589 157 FVDEFSCIGCKNCNNVAPE-VFKIEEDF 183 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~-vF~iddd~ 183 (338)
.+|...|++||.|..+||. ...+.+++
T Consensus 98 ~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~ 125 (183)
T TIGR00403 98 SIDFGVCIFCGNCVEYCPTNCLSMTEEY 125 (183)
T ss_pred ecCcccccCcCchhhhcCCCCeeccccc
Confidence 4677889999999999994 45555543
No 224
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=41.89 E-value=16 Score=38.75 Aligned_cols=54 Identities=15% Similarity=0.342 Sum_probs=36.1
Q ss_pred cCcccccCCCC--ccCCCCc-cceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEecC
Q 019589 158 VDEFSCIGCKN--CNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (338)
Q Consensus 158 vDe~~CiGCg~--C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~~ 215 (338)
.+...|..|+. |..+||. .+.+++ +. +....+....+..++..||.++|.+.+.
T Consensus 51 ~~~~~C~~C~~~~C~~~CP~~ai~~~~--~~--v~~d~~~C~gC~~C~~~CP~~ai~~~~~ 107 (639)
T PRK12809 51 ANPVACHHCNNAPCVTACPVNALTFQS--DS--VQLDEQKCIGCKRCAIACPFGVVEMVDT 107 (639)
T ss_pred ccCCCCcCcCChhHHhhCCcCceeccc--cc--eecChhhCcchhhHhhhcCCCCEEccCC
Confidence 45778999997 9999984 344432 22 2222223345678899999999988653
No 225
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=39.76 E-value=11 Score=41.15 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=32.6
Q ss_pred ccccCcccccCCCCccCCCCccceeccc-----cCceee-ccCCCCHHHHHHHHHhCCCC
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKIEED-----FGRARV-YNQCGINEFVQQAIESCPVD 208 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~iddd-----~G~a~v-~~q~g~~e~v~~Av~~CP~~ 208 (338)
.+..+...|++|+.|...||..+.+.+- .|.... ....+.+..+..+.+.||.+
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPtg 457 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPKN 457 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCCC
Confidence 3445667899999999999975432110 011000 01123445677889999996
No 226
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.53 E-value=37 Score=28.65 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=40.3
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHcCChhH
Q 019589 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128 (338)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~ 128 (338)
.-..--+||+|++..+.++|.+.|..|-....+.+.+.- -.-..|-.|-+-|.....
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSF----YLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSF----YLQSKVFRAKERLDEELK 113 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcce----eehHHHHHHHHHHHHHHH
Confidence 334567899999999999999999999998877776541 111245556666544433
No 227
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=39.16 E-value=17 Score=29.25 Aligned_cols=29 Identities=7% Similarity=0.214 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCcEEEecCcchhhhHHHH
Q 019589 197 FVQQAIESCPVDCIHRTSAQQLSLLEDEM 225 (338)
Q Consensus 197 ~v~~Av~~CP~~aI~~~~~~~~~~Le~~~ 225 (338)
..+.++..||+.||...+.+...+-.+.|
T Consensus 35 ~~k~C~~aCPagA~~~~e~G~V~vd~e~C 63 (95)
T PRK15449 35 ALELLVKACPAGLYKKQDDGSVRFDYAGC 63 (95)
T ss_pred hhhHHHHHCCHhhcEeCCCCCEEEcCCCC
Confidence 45566777777777665555555544433
No 228
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=36.61 E-value=20 Score=31.20 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=19.9
Q ss_pred ccCcccccCCCCccCCCCc-cceeccc
Q 019589 157 FVDEFSCIGCKNCNNVAPE-VFKIEED 182 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~-vF~iddd 182 (338)
.++...|++|+.|..+||. ...+...
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 119 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPTDAIVETPD 119 (164)
T ss_pred ecCCCcCcccCcchhhcCcCcceecCc
Confidence 3678899999999999994 4445443
No 229
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=36.42 E-value=18 Score=35.49 Aligned_cols=54 Identities=19% Similarity=0.440 Sum_probs=35.6
Q ss_pred CcccccCCC--CccCCCCc-cceeccccCceeeccCCCCHHHHHHHHHhCCCCcEEEec
Q 019589 159 DEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (338)
Q Consensus 159 De~~CiGCg--~C~~vap~-vF~iddd~G~a~v~~q~g~~e~v~~Av~~CP~~aI~~~~ 214 (338)
....|..|+ .|..+||. .+..+++.|... +++ +....+..++..||.++|.+..
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~V~-id~-dkCigCg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIVH-YDK-DVCTGCRYCMVACPFNVPKYDY 164 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEecccCCccc-CCH-HHcCcccHHHHhCCccceeccc
Confidence 456799998 79999994 455544434332 221 1223466789999999998653
No 230
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=35.53 E-value=20 Score=29.33 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=20.2
Q ss_pred ccCcccccCCCCccCCCCc-cceeccc
Q 019589 157 FVDEFSCIGCKNCNNVAPE-VFKIEED 182 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~-vF~iddd 182 (338)
.++...|++|+.|..+||. .+.+...
T Consensus 78 ~~~~~~C~~Cg~Cv~~CP~~al~~~~~ 104 (122)
T TIGR01971 78 QINFGRCIFCGLCEEACPTDAIVLTPE 104 (122)
T ss_pred eECcccCCCCCchhhhCCCccccccce
Confidence 4677889999999999994 4666544
No 231
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=35.52 E-value=15 Score=30.26 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=20.8
Q ss_pred cccCcccccCCCCccCCCC-ccceeccc
Q 019589 156 VFVDEFSCIGCKNCNNVAP-EVFKIEED 182 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap-~vF~iddd 182 (338)
+.++...|++|+.|..+|| +.+.+..+
T Consensus 68 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 68 VALWTGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred eEecCCcCcChhhhHHhCCcCcEEeccc
Confidence 3456788999999999998 55666554
No 232
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=35.24 E-value=88 Score=31.33 Aligned_cols=81 Identities=16% Similarity=0.338 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHh-------cCCCCCCCChhHHHHHHHHHHHHHHcCChhHhhhhhhhcccccccCCCCCCCCCCCCccc
Q 019589 85 EQIKKAYYNCMKA-------CHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVF 157 (338)
Q Consensus 85 ~eIk~aYr~l~~~-------~HPD~~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~G~s~~~lnp~~~~~~p~~~v~ 157 (338)
++|+++|++.+.. |-| .+..-.--+.|...|.++..-.-...|..|....+.. -++++. -
T Consensus 281 ~~v~~~~~~~~~v~Ct~C~yC~P--CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~-----~~~~~~------~ 347 (391)
T COG1453 281 EKVEEIYRESLKVPCTGCRYCLP--CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGG-----HWFPGP------K 347 (391)
T ss_pred HHHHHHHHHHhcCCCccccccCc--CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhccC-----ccCCCC------c
Confidence 4578888887653 223 2332345677888888776655455577776653211 111111 1
Q ss_pred cCcccccCCCCccCCCCccce
Q 019589 158 VDEFSCIGCKNCNNVAPEVFK 178 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~vF~ 178 (338)
.+...|++||.|...||...+
T Consensus 348 g~as~CieCgqCl~~CPq~l~ 368 (391)
T COG1453 348 GKASDCIECGQCLEKCPQHLD 368 (391)
T ss_pred ccccccchhhhhhhcCCCcCc
Confidence 234569999999444444333
No 233
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=34.38 E-value=14 Score=36.32 Aligned_cols=14 Identities=14% Similarity=0.603 Sum_probs=11.3
Q ss_pred HHhCCCCcEEEecC
Q 019589 202 IESCPVDCIHRTSA 215 (338)
Q Consensus 202 v~~CP~~aI~~~~~ 215 (338)
++.||++||.....
T Consensus 194 ldaCPt~Al~~~~~ 207 (337)
T COG1600 194 LDACPTGALVAPYT 207 (337)
T ss_pred HhhCCcccccCCCc
Confidence 99999999976543
No 234
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=34.16 E-value=29 Score=34.17 Aligned_cols=18 Identities=39% Similarity=0.899 Sum_probs=13.8
Q ss_pred cCcccccCCCCccCCCCc
Q 019589 158 VDEFSCIGCKNCNNVAPE 175 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~ 175 (338)
+|...|.+||.|..+||.
T Consensus 2 ~~~~~c~~Cg~C~a~cp~ 19 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY 19 (332)
T ss_pred CcCcccccchhhHhhCCc
Confidence 466789999999655555
No 235
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=33.90 E-value=20 Score=31.38 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=20.0
Q ss_pred cccCcccccCCCCccCCCCcc-ceeccc
Q 019589 156 VFVDEFSCIGCKNCNNVAPEV-FKIEED 182 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~v-F~iddd 182 (338)
..+|...|++|+.|..+||.. +.+...
T Consensus 94 ~~id~~~C~~Cg~C~~~CP~~AI~~~~~ 121 (167)
T CHL00014 94 YSIDFGVCIFCGNCVEYCPTNCLSMTEE 121 (167)
T ss_pred ccCCCCcCcCccchHhhcCcCceecCCc
Confidence 345667899999999999953 555444
No 236
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=32.70 E-value=23 Score=34.85 Aligned_cols=15 Identities=27% Similarity=1.050 Sum_probs=11.0
Q ss_pred CcccccCCCCccCCC
Q 019589 159 DEFSCIGCKNCNNVA 173 (338)
Q Consensus 159 De~~CiGCg~C~~va 173 (338)
....|+|||.|...|
T Consensus 299 G~~~CvgCGrC~~~C 313 (334)
T TIGR02910 299 GYHMCVGCGRCDDIC 313 (334)
T ss_pred CccccCCcCchhhhC
Confidence 467899999993333
No 237
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=31.41 E-value=19 Score=41.32 Aligned_cols=21 Identities=29% Similarity=0.933 Sum_probs=18.2
Q ss_pred cccCcccccCCCCccCCCCcc
Q 019589 156 VFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~v 176 (338)
+.++...|++|+.|+.+||..
T Consensus 734 i~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 734 IQISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred EEeccccCcCccchhhhcCCC
Confidence 457789999999999999974
No 238
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=31.20 E-value=13 Score=31.38 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=17.3
Q ss_pred ccCcccccCCCCccCCCCcc
Q 019589 157 FVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~v 176 (338)
.++...|++||.|..+||..
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred EeCcCcCcChhHHHHHCCcC
Confidence 46778899999999999965
No 239
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=30.29 E-value=23 Score=35.96 Aligned_cols=19 Identities=37% Similarity=0.737 Sum_probs=15.2
Q ss_pred cCcccccCCCCccCCCCcc
Q 019589 158 VDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~v 176 (338)
..+..|++|+.|..+||..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred ccCCcCcCccchhhhCccc
Confidence 3457999999998888743
No 240
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=30.12 E-value=20 Score=40.46 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=16.5
Q ss_pred cccCcccccCCCCccCCCCcc
Q 019589 156 VFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~v 176 (338)
+..++..|++||.|..+||..
T Consensus 921 ~~~~~~~C~~CG~C~~~CP~~ 941 (1019)
T PRK09853 921 IVHLDAMCNECGNCAQFCPWN 941 (1019)
T ss_pred eEEcCccCccccchhhhCCCC
Confidence 333459999999999999743
No 241
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=29.41 E-value=20 Score=34.58 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=18.9
Q ss_pred ccccCcccccCCCCccCCCCcc
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v 176 (338)
.+.+|...|++|+.|..+||..
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTG 216 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHh
Confidence 4567899999999999999954
No 242
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=29.05 E-value=21 Score=28.86 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=17.3
Q ss_pred cccCcccccCCCCccCCCCc
Q 019589 156 VFVDEFSCIGCKNCNNVAPE 175 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~ 175 (338)
..++...|++|+.|..+||.
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09624 76 PVFDYDYCKGCGICANECPT 95 (105)
T ss_pred EEECchhCCCcCchhhhcCc
Confidence 45688899999999999984
No 243
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=28.97 E-value=30 Score=32.36 Aligned_cols=13 Identities=38% Similarity=1.020 Sum_probs=10.1
Q ss_pred cccCCCCccCCCC
Q 019589 162 SCIGCKNCNNVAP 174 (338)
Q Consensus 162 ~CiGCg~C~~vap 174 (338)
.||.||.|...||
T Consensus 143 ~CI~Cg~C~s~CP 155 (234)
T COG0479 143 ECILCGCCTAACP 155 (234)
T ss_pred hccccchhhhhCC
Confidence 5999999955554
No 244
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=28.84 E-value=51 Score=16.87 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcC
Q 019589 112 FCMFINEVYAVLS 124 (338)
Q Consensus 112 ~f~~i~~Ay~vLs 124 (338)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888764
No 245
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=28.35 E-value=60 Score=30.49 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=18.9
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhcCCC
Q 019589 73 YAVLGLLPDATPEQIKKAYYNCMKACHPD 101 (338)
Q Consensus 73 Y~vLgv~~~as~~eIk~aYr~l~~~~HPD 101 (338)
|.|=|-+|+ .++|..+...+..--+|-
T Consensus 131 ~~IpGCPP~--~e~I~~al~all~ge~p~ 157 (247)
T COG1941 131 YAIPGCPPS--PEEIARALTALLEGEEPE 157 (247)
T ss_pred eecCCCCcC--HHHHHHHHHHHHcCCCcc
Confidence 346666665 678888888886666664
No 246
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=27.70 E-value=22 Score=34.64 Aligned_cols=17 Identities=53% Similarity=1.062 Sum_probs=8.3
Q ss_pred cCcccccCCCCccCCCC
Q 019589 158 VDEFSCIGCKNCNNVAP 174 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap 174 (338)
+|++.|.||+.|+.+|+
T Consensus 169 ~~~E~c~gc~~cv~~C~ 185 (317)
T COG2221 169 VDEELCRGCGKCVKVCP 185 (317)
T ss_pred cCHHHhchhHhHHHhCC
Confidence 34445555555544444
No 247
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=27.11 E-value=31 Score=37.56 Aligned_cols=25 Identities=32% Similarity=0.650 Sum_probs=19.3
Q ss_pred ccccCcccccCCCCccCCCCcccee
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKI 179 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~i 179 (338)
.+-+.+..|+.||.|+.+||----|
T Consensus 186 ~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 186 DVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred CCccccccccccCccceecchhhhh
Confidence 3445678999999999999955433
No 248
>PRK06273 ferredoxin; Provisional
Probab=26.55 E-value=32 Score=30.33 Aligned_cols=21 Identities=24% Similarity=0.573 Sum_probs=17.9
Q ss_pred cccCcccccCCCCccCCCCcc
Q 019589 156 VFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~v 176 (338)
..+|...|++|+.|..+||..
T Consensus 86 ~~Id~~kCi~Cg~C~~aCP~~ 106 (165)
T PRK06273 86 PKIDYEKCVYCLYCHDFCPVF 106 (165)
T ss_pred eecccccCcCCCCcchhCCHh
Confidence 356889999999999999964
No 249
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=26.31 E-value=38 Score=30.14 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=21.0
Q ss_pred ccCcccccCCCCccCCCC-ccceeccccC
Q 019589 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFG 184 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap-~vF~iddd~G 184 (338)
.++...|++||.|..+|| +...+..+++
T Consensus 69 ~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~ 97 (181)
T PRK08222 69 QLYLGRCIYCGRCEEVCPTRAIQLTNNFE 97 (181)
T ss_pred eeccCcCcCCCCcccccCcCeEEecccee
Confidence 345678999999999999 4556665544
No 250
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=26.19 E-value=16 Score=36.85 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCCcEEEecCcchhhhHHHHH
Q 019589 197 FVQQAIESCPVDCIHRTSAQQLSLLEDEMR 226 (338)
Q Consensus 197 ~v~~Av~~CP~~aI~~~~~~~~~~Le~~~~ 226 (338)
.+.+.++.||+.||+|.+...+.+-...|.
T Consensus 246 ~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~ 275 (402)
T TIGR02064 246 IENEVVNRCPTKAISWDGSKELSIDNRECV 275 (402)
T ss_pred cchhHhhcCCccccccCCCceEEEcchhcC
Confidence 345679999999999987546666666665
No 251
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=25.66 E-value=34 Score=30.22 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=20.2
Q ss_pred ccCcccccCCCCccCCCCc-cceeccc
Q 019589 157 FVDEFSCIGCKNCNNVAPE-VFKIEED 182 (338)
Q Consensus 157 ~vDe~~CiGCg~C~~vap~-vF~iddd 182 (338)
.++...|++|+.|..+||. ...+..+
T Consensus 69 ~i~~~~C~~Cg~C~~vCP~~AI~~~~~ 95 (180)
T PRK12387 69 EFNLGRCIFCGRCEEVCPTAAIKLSQE 95 (180)
T ss_pred eeccccCcCccchhhhcCcCceEccCc
Confidence 4678899999999999994 4455544
No 252
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=25.27 E-value=24 Score=35.45 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=19.8
Q ss_pred cccCcccccCCCCccCCCCc--cceec
Q 019589 156 VFVDEFSCIGCKNCNNVAPE--VFKIE 180 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~--vF~id 180 (338)
..++...|++|+.|..+||. .+.+.
T Consensus 372 ~~i~~~~C~~Cg~C~~~CP~~~Ai~~~ 398 (420)
T PRK08318 372 PEVIEEECVGCNLCAHVCPVEGCITMG 398 (420)
T ss_pred EEechhhCcccchHHhhCCCCCCEEEe
Confidence 34788999999999999996 44443
No 253
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=25.05 E-value=28 Score=32.43 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=16.3
Q ss_pred ccccCCCCccCCCCccceecccc
Q 019589 161 FSCIGCKNCNNVAPEVFKIEEDF 183 (338)
Q Consensus 161 ~~CiGCg~C~~vap~vF~iddd~ 183 (338)
..||.||.|...|| +|..+.+|
T Consensus 149 ~~CI~Cg~C~saCP-~~~~~~~f 170 (239)
T PRK13552 149 DRCIECGCCVAACG-TKQMREDF 170 (239)
T ss_pred hhccccchhHhhCC-CCccCCCc
Confidence 46999999999998 34444445
No 254
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=24.88 E-value=2.2e+02 Score=21.95 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=26.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 019589 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLS 103 (338)
Q Consensus 71 d~Y~vLgv~~~as~~eIk~aYr~l~~~~HPD~~ 103 (338)
|--+++|+++-++..||+.|-++...++.--..
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~ 36 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTH 36 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 445788999999999999998888877644333
No 255
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=24.86 E-value=35 Score=32.12 Aligned_cols=17 Identities=35% Similarity=0.897 Sum_probs=13.4
Q ss_pred cccccCCCCccCCCCcc
Q 019589 160 EFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 160 e~~CiGCg~C~~vap~v 176 (338)
...||.||.|+..||..
T Consensus 156 ~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 156 AAACIGCGACVAACPNG 172 (250)
T ss_pred ccccCCCcccccccCCc
Confidence 35799999997777754
No 256
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=24.85 E-value=42 Score=33.87 Aligned_cols=32 Identities=22% Similarity=0.580 Sum_probs=24.2
Q ss_pred ccccCcccccCCCCccCCCCccceeccccCce
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRA 186 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~vF~iddd~G~a 186 (338)
.+.+|...|+.|++|..+||.......+.|..
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~a~~~g~~~G~~ 297 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPKALHPGDERGVT 297 (402)
T ss_pred eEEEcchhcCcCccccccCcccccCCCCCeEE
Confidence 56788899999999999999865555444543
No 257
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=24.42 E-value=33 Score=33.00 Aligned_cols=18 Identities=39% Similarity=0.839 Sum_probs=15.4
Q ss_pred cCcccccCCCCccCCCCc
Q 019589 158 VDEFSCIGCKNCNNVAPE 175 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~ 175 (338)
+|...|.+|+.|..+||.
T Consensus 286 ~d~~~C~gCg~C~~~CP~ 303 (312)
T PRK14028 286 FDYQYCKGCGVCAEVCPT 303 (312)
T ss_pred CCcccCcCcCchhhhCCH
Confidence 455789999999999994
No 258
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=22.97 E-value=27 Score=35.56 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=18.7
Q ss_pred cccccCCCCccCCCCccceecccc
Q 019589 160 EFSCIGCKNCNNVAPEVFKIEEDF 183 (338)
Q Consensus 160 e~~CiGCg~C~~vap~vF~iddd~ 183 (338)
...||.||.|...||-.-.+...+
T Consensus 307 ~L~CIRCGaC~n~CPvY~~iGgh~ 330 (459)
T COG1139 307 ALRCIRCGACLNHCPVYRHIGGHA 330 (459)
T ss_pred HHHhhcchHhhhcChhhhhccCee
Confidence 457999999999999765665444
No 259
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=22.48 E-value=15 Score=38.21 Aligned_cols=53 Identities=28% Similarity=0.533 Sum_probs=31.7
Q ss_pred CcccccCCCCccCCCCccceeccccCceeecc--CCCC-------HHHHHHHHHhCCCCcEEE
Q 019589 159 DEFSCIGCKNCNNVAPEVFKIEEDFGRARVYN--QCGI-------NEFVQQAIESCPVDCIHR 212 (338)
Q Consensus 159 De~~CiGCg~C~~vap~vF~iddd~G~a~v~~--q~g~-------~e~v~~Av~~CP~~aI~~ 212 (338)
-...||.|..|+..+.++-.++|- |..-.-. |.|. .|.--..++.|||.|++-
T Consensus 173 imtrciqctrcvrfaseiagv~dl-gttgrg~d~qigtyvek~f~selsgniidicpvgalts 234 (708)
T KOG2282|consen 173 IMTRCIQCTRCVRFASEIAGVDDL-GTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTS 234 (708)
T ss_pred HHHHHHhHHHHHHHHHhhcCCccc-ccccCCCcchHHHHHHHHHHHhhcCCeeeecccccccc
Confidence 357899999999998887766543 2211100 1111 011123589999999874
No 260
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=22.22 E-value=21 Score=33.07 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.9
Q ss_pred cccCcccccCCCCccCCCCccceeccc
Q 019589 156 VFVDEFSCIGCKNCNNVAPEVFKIEED 182 (338)
Q Consensus 156 v~vDe~~CiGCg~C~~vap~vF~iddd 182 (338)
..++...|++|+.|...||..|..+++
T Consensus 198 ~~i~~~~C~~C~~C~~~CP~~~~~~~~ 224 (228)
T TIGR03294 198 PNVNRDRCIKCGACYVQCPRAFWPEYE 224 (228)
T ss_pred EEEChhhccCHHHHHHHcCCCCcchhh
Confidence 457889999999999999998877654
No 261
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=22.21 E-value=44 Score=32.87 Aligned_cols=23 Identities=35% Similarity=0.937 Sum_probs=16.4
Q ss_pred cccccCCCCccCCCCcc--ceeccc
Q 019589 160 EFSCIGCKNCNNVAPEV--FKIEED 182 (338)
Q Consensus 160 e~~CiGCg~C~~vap~v--F~iddd 182 (338)
...|++||.|..+||.- |.|.|.
T Consensus 219 ~~rCi~C~~C~~~CPtC~Cf~i~D~ 243 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTCTCFSMQDV 243 (334)
T ss_pred HhhCCcCccccccCCceEeeEEEEe
Confidence 36899999997777743 555443
No 262
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=22.05 E-value=45 Score=32.61 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=16.9
Q ss_pred cCcccccCCCCccCCCCccc
Q 019589 158 VDEFSCIGCKNCNNVAPEVF 177 (338)
Q Consensus 158 vDe~~CiGCg~C~~vap~vF 177 (338)
++...|++||.|..+||...
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~~ 69 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVVD 69 (341)
T ss_pred CCcCcCcCcCchhhhCCCCc
Confidence 57788999999999999654
No 263
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=21.26 E-value=1.2e+02 Score=18.69 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=12.4
Q ss_pred CCCCchHHHHHHHHHHHHHH
Q 019589 291 DYRNSEEEVKERSKRAAAAA 310 (338)
Q Consensus 291 ~~~~~~~~~~~~a~~~aa~~ 310 (338)
+.+....++++-+.+.|||+
T Consensus 4 ~s~~d~~~~~r~~lR~AALe 23 (28)
T PF12434_consen 4 DSTADNKEDKRAQLRQAALE 23 (28)
T ss_pred cccccchHHHHHHHHHHHHH
Confidence 33344445666778888875
No 264
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=20.92 E-value=34 Score=32.32 Aligned_cols=22 Identities=18% Similarity=0.649 Sum_probs=18.7
Q ss_pred ccccCcccccCCCCccCCCCcc
Q 019589 155 HVFVDEFSCIGCKNCNNVAPEV 176 (338)
Q Consensus 155 ~v~vDe~~CiGCg~C~~vap~v 176 (338)
.+.++...|++|+.|...||..
T Consensus 76 ~~~~~~~~C~~Cg~C~~~CP~~ 97 (295)
T TIGR02494 76 RIIIRREKCTHCGKCTEACPSG 97 (295)
T ss_pred ceeechhhcCchhHhhccCcHh
Confidence 4567889999999999999843
No 265
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=20.06 E-value=16 Score=25.34 Aligned_cols=16 Identities=38% Similarity=0.866 Sum_probs=10.2
Q ss_pred cccccCCCCccCCCCc
Q 019589 160 EFSCIGCKNCNNVAPE 175 (338)
Q Consensus 160 e~~CiGCg~C~~vap~ 175 (338)
-..|++||.|..++|-
T Consensus 2 ~~~Ci~Cg~C~~~CP~ 17 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPV 17 (57)
T ss_dssp HHC--S-SHHHHCSHH
T ss_pred HHHccCccChHHHChh
Confidence 3579999999888873
Done!