BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019591
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 232 HMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNM 291
HM+ S+ +Q + E +R + +E++I EL +F +A +V QGE+ RI+ N+
Sbjct: 3 HMDSSISKQALSEIE----TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 58
Query: 292 DESLANVEGARNALLRHLNQISSNRW--LMIKIFAVII 327
+ ++ VE A + + + S R +MI I VI+
Sbjct: 59 EHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVIL 96
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 7 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 58
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 259
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 302
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ +E A+
Sbjct: 22 EARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAK 74
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 68
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 12 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 63
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
N + R + +E ++ EL +FT ++T+VA QGE+ RI+ ++++S V+ A
Sbjct: 210 NEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKA 264
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 57
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
Length = 257
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 108 SDLQTLQNLEIVE--GNYSQDRVVHSTTVCDDLKSKLMGA--TKELQDVLTTRTENIKAH 163
SD+Q L + + E NY Q+ + + + DD+K +G T + +D+ + N+ +
Sbjct: 54 SDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDL--AKVPNLYSV 111
Query: 164 ESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSAL 208
E+ + A L +S R QP P + +N S Q S L
Sbjct: 112 ETIDSLKKAKKLNES--RAKFQPDCNPILCNVQINTSHEDQKSGL 154
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein
Ybl036c-Selenomet Crystal
Length = 256
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 108 SDLQTLQNLEIVE--GNYSQDRVVHSTTVCDDLKSKLMGA--TKELQDVLTTRTENIKAH 163
SD+Q L + + E NY Q+ + + + DD+K +G T + +D+ + N+ +
Sbjct: 53 SDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDL--AKVPNLYSV 110
Query: 164 ESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSAL 208
E+ + A L +S R QP P + +N S Q S L
Sbjct: 111 ETIDSLKKAKKLNES--RAKFQPDCNPILCNVQINTSHEDQKSGL 153
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 148 ELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEP 190
ELQ+++ T+ I A E+RK+ A+A D P R+ ++P
Sbjct: 548 ELQNLMLNATQTIVAAENRKESRGAHARDDFPKREDEYDYSKP 590
>pdb|4ADN|A Chain A, Fusidic Acid Resistance Protein Fusb
pdb|4ADN|B Chain B, Fusidic Acid Resistance Protein Fusb
pdb|4ADO|A Chain A, Fusidic Acid Resistance Protein Fusb
pdb|4ADO|B Chain B, Fusidic Acid Resistance Protein Fusb
Length = 222
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 236 SMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESL 295
M + P Q NY +S + L NV T+ + + + E+ IDD+++ESL
Sbjct: 9 GMKTMIYPHQYNYIRSVILRLKNVYKTVNDKETVKVIQSETYNDINEIFGHIDDDIEESL 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,712,668
Number of Sequences: 62578
Number of extensions: 313685
Number of successful extensions: 878
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 22
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)