Query 019591
Match_columns 338
No_of_seqs 190 out of 1014
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812 SNARE protein SED5/Syn 100.0 1.7E-64 3.7E-69 458.3 34.3 310 3-338 1-311 (311)
2 KOG0809 SNARE protein TLG2/Syn 100.0 3.1E-40 6.7E-45 301.8 25.8 284 5-337 2-301 (305)
3 KOG0810 SNARE protein Syntaxin 100.0 3.3E-27 7.2E-32 221.8 27.5 246 46-335 33-287 (297)
4 COG5325 t-SNARE complex subuni 99.9 2.2E-23 4.9E-28 189.8 25.8 233 50-335 35-276 (283)
5 KOG0811 SNARE protein PEP12/VA 99.9 2.2E-22 4.7E-27 186.4 29.1 242 46-335 14-263 (269)
6 COG5074 t-SNARE complex subuni 99.8 2.1E-18 4.6E-23 153.3 22.7 235 49-334 21-268 (280)
7 KOG3894 SNARE protein Syntaxin 99.5 7E-11 1.5E-15 110.3 29.4 303 6-336 1-313 (316)
8 PF05739 SNARE: SNARE domain; 99.4 1.5E-12 3.3E-17 95.3 10.2 63 251-313 1-63 (63)
9 cd00193 t_SNARE Soluble NSF (N 99.3 5.9E-12 1.3E-16 90.7 7.9 59 250-308 2-60 (60)
10 smart00397 t_SNARE Helical reg 99.2 6.5E-11 1.4E-15 86.7 9.2 63 246-308 4-66 (66)
11 PF00804 Syntaxin: Syntaxin; 98.8 1E-07 2.2E-12 75.7 12.5 98 48-153 2-103 (103)
12 KOG3202 SNARE protein TLG1/Syn 98.8 6.1E-06 1.3E-10 75.6 25.0 214 48-320 5-219 (235)
13 cd00179 SynN Syntaxin N-termin 98.6 5.3E-06 1.1E-10 70.9 16.3 123 48-172 1-127 (151)
14 smart00503 SynN Syntaxin N-ter 98.4 9.3E-06 2E-10 66.2 14.5 110 48-160 3-116 (117)
15 KOG0810 SNARE protein Syntaxin 97.5 0.014 3.1E-07 55.6 19.6 209 82-336 80-291 (297)
16 PF00957 Synaptobrevin: Synapt 97.3 0.01 2.2E-07 46.2 12.7 48 254-301 3-50 (89)
17 KOG3385 V-SNARE [Intracellular 97.1 0.004 8.7E-08 50.5 8.4 82 251-334 33-115 (118)
18 PF14523 Syntaxin_2: Syntaxin- 96.9 0.066 1.4E-06 42.5 14.0 96 58-161 1-99 (102)
19 KOG0811 SNARE protein PEP12/VA 96.8 0.029 6.3E-07 52.7 13.4 96 238-335 171-266 (269)
20 KOG0860 Synaptobrevin/VAMP-lik 96.8 0.033 7.2E-07 45.4 11.8 40 253-292 28-67 (116)
21 PF11416 Sed5p: Integral membr 96.8 0.00044 9.6E-09 42.1 0.6 23 3-25 2-24 (29)
22 PF09753 Use1: Membrane fusion 96.7 0.037 8E-07 51.5 13.4 75 253-331 169-243 (251)
23 KOG1666 V-SNARE [Intracellular 95.7 1.5 3.2E-05 39.7 25.4 83 251-337 135-217 (220)
24 COG5074 t-SNARE complex subuni 95.7 0.13 2.7E-06 47.0 10.7 89 246-335 184-272 (280)
25 COG5325 t-SNARE complex subuni 95.4 0.27 5.8E-06 46.0 11.8 90 241-334 189-278 (283)
26 PF10496 Syntaxin-18_N: SNARE- 95.1 0.14 3.1E-06 39.6 7.9 66 6-76 1-66 (87)
27 KOG3208 SNARE protein GS28 [In 94.8 3 6.5E-05 37.9 22.8 97 48-155 7-111 (231)
28 PF03908 Sec20: Sec20; InterP 93.9 2.1 4.5E-05 33.5 12.1 59 276-335 30-88 (92)
29 PF09177 Syntaxin-6_N: Syntaxi 91.0 6.4 0.00014 31.0 12.3 91 50-144 2-95 (97)
30 KOG2678 Predicted membrane pro 90.3 8.2 0.00018 35.2 12.6 62 258-320 155-220 (244)
31 PF09753 Use1: Membrane fusion 88.6 12 0.00025 34.8 13.0 77 257-336 166-245 (251)
32 KOG3251 Golgi SNAP receptor co 86.7 24 0.00053 32.0 25.7 76 87-168 29-104 (213)
33 KOG3065 SNAP-25 (synaptosome-a 86.3 3.4 7.5E-05 39.0 8.0 57 251-307 215-271 (273)
34 KOG0860 Synaptobrevin/VAMP-lik 86.3 2.9 6.2E-05 34.3 6.5 14 293-306 71-84 (116)
35 PF09889 DUF2116: Uncharacteri 85.3 1.4 3E-05 31.9 3.7 10 311-320 34-43 (59)
36 PF03904 DUF334: Domain of unk 84.2 31 0.00068 31.6 12.7 88 247-336 64-168 (230)
37 PF09889 DUF2116: Uncharacteri 81.6 2.6 5.6E-05 30.4 3.9 29 308-336 28-56 (59)
38 PF05478 Prominin: Prominin; 81.5 87 0.0019 34.2 25.8 66 254-325 357-422 (806)
39 KOG0809 SNARE protein TLG2/Syn 79.1 15 0.00033 34.9 9.1 95 243-337 200-298 (305)
40 PF00957 Synaptobrevin: Synapt 76.3 32 0.0007 26.3 12.1 20 247-266 24-43 (89)
41 PF05478 Prominin: Prominin; 75.3 1.3E+02 0.0029 32.9 21.5 21 92-112 247-267 (806)
42 PF10779 XhlA: Haemolysin XhlA 75.1 31 0.00067 25.5 10.1 32 303-334 37-69 (71)
43 KOG0812 SNARE protein SED5/Syn 74.8 67 0.0015 30.6 12.0 45 256-300 236-280 (311)
44 PF12352 V-SNARE_C: Snare regi 71.4 35 0.00075 24.5 10.1 54 256-309 10-63 (66)
45 KOG3850 Predicted membrane pro 70.2 1.2E+02 0.0026 30.1 13.7 50 257-306 309-359 (455)
46 PF07889 DUF1664: Protein of u 61.4 96 0.0021 25.9 9.8 84 48-145 38-122 (126)
47 PF00804 Syntaxin: Syntaxin; 61.2 66 0.0014 24.5 8.1 57 82-146 47-103 (103)
48 PF10267 Tmemb_cc2: Predicted 61.2 1.8E+02 0.004 29.0 17.4 74 248-327 270-348 (395)
49 KOG3065 SNAP-25 (synaptosome-a 61.0 63 0.0014 30.6 9.0 36 271-306 96-131 (273)
50 PF10717 ODV-E18: Occlusion-de 60.2 11 0.00024 29.0 3.1 16 321-336 29-44 (85)
51 cd00193 t_SNARE Soluble NSF (N 60.1 52 0.0011 22.4 8.2 55 258-312 3-57 (60)
52 KOG2678 Predicted membrane pro 59.4 1.5E+02 0.0032 27.3 12.3 23 313-335 210-232 (244)
53 PF06422 PDR_CDR: CDR ABC tran 59.2 11 0.00024 30.1 3.2 34 300-333 32-65 (103)
54 PF12911 OppC_N: N-terminal TM 58.6 20 0.00043 24.8 4.1 17 305-321 5-21 (56)
55 PF04906 Tweety: Tweety; Inte 57.0 35 0.00077 34.1 7.1 23 312-334 181-203 (406)
56 PF04102 SlyX: SlyX; InterPro 56.4 78 0.0017 23.3 7.3 49 254-302 4-52 (69)
57 PF02346 Vac_Fusion: Chordopox 54.9 76 0.0016 22.7 6.5 44 255-298 2-45 (57)
58 PF10241 KxDL: Uncharacterized 52.6 65 0.0014 24.9 6.5 69 47-115 12-81 (88)
59 PHA03240 envelope glycoprotein 51.7 13 0.00029 33.7 2.7 7 317-323 215-221 (258)
60 PF14992 TMCO5: TMCO5 family 51.3 2.2E+02 0.0048 27.0 12.2 53 249-301 125-177 (280)
61 PF11166 DUF2951: Protein of u 51.3 1.2E+02 0.0026 24.0 11.6 42 255-296 12-53 (98)
62 PHA02844 putative transmembran 51.2 21 0.00045 26.9 3.3 9 315-323 46-54 (75)
63 PHA03164 hypothetical protein; 50.4 23 0.0005 26.8 3.4 21 317-337 60-80 (88)
64 PRK10299 PhoPQ regulatory prot 48.8 23 0.0005 24.2 2.9 17 313-329 2-18 (47)
65 PF05957 DUF883: Bacterial pro 47.0 1.3E+02 0.0029 23.2 11.6 65 258-322 6-79 (94)
66 KOG0859 Synaptobrevin/VAMP-lik 46.6 61 0.0013 29.2 6.0 61 253-317 124-184 (217)
67 PRK14762 membrane protein; Pro 46.4 35 0.00076 20.2 3.0 8 317-324 6-13 (27)
68 PHA02975 hypothetical protein; 46.1 29 0.00063 25.7 3.3 11 313-323 40-50 (69)
69 PF10398 DUF2443: Protein of u 45.9 1.3E+02 0.0028 22.7 8.0 54 52-105 2-71 (79)
70 PF14257 DUF4349: Domain of un 45.7 1.3E+02 0.0029 27.8 8.7 116 143-338 128-251 (262)
71 cd07912 Tweety_N N-terminal do 45.6 2.1E+02 0.0045 28.9 10.4 10 262-271 146-155 (418)
72 PHA02675 ORF104 fusion protein 45.1 1.3E+02 0.0028 23.2 6.8 40 259-298 35-74 (90)
73 PHA03054 IMV membrane protein; 45.0 30 0.00066 25.7 3.3 7 314-320 45-51 (72)
74 PHA02819 hypothetical protein; 44.9 30 0.00065 25.8 3.2 9 314-322 43-51 (71)
75 PF05366 Sarcolipin: Sarcolipi 43.9 30 0.00064 21.1 2.5 23 314-336 4-26 (31)
76 PF09278 MerR-DNA-bind: MerR, 43.5 1.1E+02 0.0025 21.4 6.6 56 49-114 4-59 (65)
77 PF13956 Ibs_toxin: Toxin Ibs, 43.2 12 0.00026 20.4 0.7 8 317-324 4-11 (19)
78 PHA02692 hypothetical protein; 40.6 39 0.00084 25.2 3.3 7 314-320 42-48 (70)
79 PF07889 DUF1664: Protein of u 40.5 1.1E+02 0.0025 25.4 6.5 44 247-290 82-125 (126)
80 PRK14710 hypothetical protein; 39.6 35 0.00076 25.5 2.9 19 317-335 10-28 (86)
81 PRK00295 hypothetical protein; 36.4 1.7E+02 0.0037 21.5 7.9 45 256-300 7-51 (68)
82 PF06024 DUF912: Nucleopolyhed 36.2 30 0.00065 27.6 2.3 9 326-334 72-80 (101)
83 PF11945 WASH_WAHD: WAHD domai 36.1 1.6E+02 0.0035 28.2 7.7 48 254-301 18-69 (297)
84 PF15102 TMEM154: TMEM154 prot 34.6 17 0.00037 31.0 0.7 21 317-337 58-78 (146)
85 PF06024 DUF912: Nucleopolyhed 34.0 30 0.00064 27.6 2.0 14 323-336 65-78 (101)
86 PF11598 COMP: Cartilage oligo 33.8 92 0.002 21.2 4.0 27 257-283 4-30 (45)
87 smart00502 BBC B-Box C-termina 33.2 2.4E+02 0.0051 22.1 8.6 54 259-312 37-91 (127)
88 PF10146 zf-C4H2: Zinc finger- 33.2 3.9E+02 0.0085 24.6 10.6 65 48-112 10-74 (230)
89 PRK10573 type IV pilin biogene 32.7 1.5E+02 0.0034 29.1 7.3 38 259-296 111-148 (399)
90 PHA02849 putative transmembran 32.6 59 0.0013 24.8 3.2 18 318-335 18-35 (82)
91 PF01540 Lipoprotein_7: Adhesi 32.1 4.5E+02 0.0097 25.0 9.6 53 48-107 216-268 (353)
92 PF15106 TMEM156: TMEM156 prot 32.0 44 0.00096 30.3 2.9 13 323-335 182-194 (226)
93 PF12575 DUF3753: Protein of u 31.9 54 0.0012 24.6 2.9 14 317-330 45-58 (72)
94 COG4640 Predicted membrane pro 31.7 56 0.0012 32.5 3.8 11 300-310 31-41 (465)
95 COG3630 OadG Na+-transporting 31.5 53 0.0012 25.4 2.9 18 319-336 12-29 (84)
96 KOG4460 Nuclear pore complex, 31.3 4.4E+02 0.0094 27.7 10.0 26 126-151 662-687 (741)
97 PF13314 DUF4083: Domain of un 31.3 70 0.0015 22.9 3.2 14 323-336 13-26 (58)
98 PRK02793 phi X174 lysis protei 31.1 2.2E+02 0.0048 21.1 7.8 47 254-300 8-54 (72)
99 TIGR01195 oadG_fam sodium pump 31.1 51 0.0011 25.2 2.8 15 321-335 11-25 (82)
100 smart00503 SynN Syntaxin N-ter 30.5 2.6E+02 0.0057 21.8 9.2 29 88-116 5-33 (117)
101 PRK04325 hypothetical protein; 30.4 2.3E+02 0.005 21.1 7.8 45 256-300 11-55 (74)
102 PHA02650 hypothetical protein; 30.4 68 0.0015 24.5 3.2 20 315-334 44-63 (81)
103 cd00179 SynN Syntaxin N-termin 30.2 3.1E+02 0.0068 22.6 11.3 38 134-171 82-119 (151)
104 COG2443 Sss1 Preprotein transl 30.1 2.3E+02 0.0049 20.9 6.6 49 287-335 4-57 (65)
105 COG1459 PulF Type II secretory 30.0 1.6E+02 0.0036 29.3 6.9 29 269-297 120-148 (397)
106 PRK11466 hybrid sensory histid 29.7 6E+02 0.013 27.6 11.9 26 298-323 315-340 (914)
107 TIGR02956 TMAO_torS TMAO reduc 29.3 5.7E+02 0.012 28.0 11.7 25 86-110 72-96 (968)
108 PHA02844 putative transmembran 29.0 71 0.0015 24.1 3.1 19 317-335 45-63 (75)
109 PF04210 MtrG: Tetrahydrometha 28.9 2.5E+02 0.0054 21.0 7.5 11 284-294 21-31 (70)
110 PF10392 COG5: Golgi transport 28.9 3.3E+02 0.0072 22.4 10.6 27 133-159 72-98 (132)
111 PF07127 Nodulin_late: Late no 28.9 48 0.001 23.1 2.1 17 319-335 4-20 (54)
112 PF10717 ODV-E18: Occlusion-de 28.8 60 0.0013 25.0 2.7 17 317-333 28-44 (85)
113 smart00397 t_SNARE Helical reg 28.6 2E+02 0.0043 19.7 9.5 53 246-298 11-63 (66)
114 PRK00736 hypothetical protein; 28.2 2.4E+02 0.0053 20.7 7.8 45 256-300 7-51 (68)
115 PF12252 SidE: Dot/Icm substra 27.5 9.8E+02 0.021 27.4 12.9 109 55-165 1123-1269(1439)
116 PF07332 DUF1469: Protein of u 27.4 2.7E+02 0.006 22.2 6.8 9 269-277 8-16 (121)
117 TIGR02120 GspF general secreti 27.3 3.3E+02 0.0072 26.7 8.6 54 246-299 296-355 (399)
118 COG2966 Uncharacterized conser 27.0 1.1E+02 0.0023 28.7 4.6 37 290-326 98-135 (250)
119 PF00523 Fusion_gly: Fusion gl 26.9 1E+02 0.0022 31.8 4.8 22 130-151 175-196 (490)
120 PF10661 EssA: WXG100 protein 26.8 76 0.0017 27.1 3.4 10 326-335 130-139 (145)
121 COG4499 Predicted membrane pro 26.3 80 0.0017 31.4 3.8 19 307-325 207-225 (434)
122 COG4068 Uncharacterized protei 26.3 99 0.0021 22.3 3.3 7 304-310 31-37 (64)
123 TIGR03715 KxYKxGKxW KxYKxGKxW 26.2 52 0.0011 19.9 1.7 16 311-326 7-22 (29)
124 COG4942 Membrane-bound metallo 25.9 6.4E+02 0.014 25.5 10.1 58 249-306 40-97 (420)
125 PF08999 SP_C-Propep: Surfacta 25.9 82 0.0018 24.2 3.0 7 317-323 36-42 (93)
126 KOG1326 Membrane-associated pr 25.8 62 0.0013 35.9 3.2 26 49-74 645-670 (1105)
127 PF13198 DUF4014: Protein of u 25.7 87 0.0019 23.4 3.0 11 306-316 6-16 (72)
128 PF11239 DUF3040: Protein of u 25.7 98 0.0021 23.4 3.5 17 283-299 10-26 (82)
129 PF14715 FixP_N: N-terminal do 25.5 1E+02 0.0022 21.5 3.2 17 320-336 25-41 (51)
130 PRK02119 hypothetical protein; 25.4 2.9E+02 0.0063 20.6 8.2 48 253-300 8-55 (73)
131 PF04799 Fzo_mitofusin: fzo-li 25.3 4.7E+02 0.01 23.0 8.4 29 87-115 116-144 (171)
132 PRK10935 nitrate/nitrite senso 25.1 4.9E+02 0.011 26.3 9.6 7 317-323 152-158 (565)
133 TIGR02120 GspF general secreti 25.0 2.5E+02 0.0053 27.6 7.2 33 267-299 121-153 (399)
134 PF05399 EVI2A: Ectropic viral 25.0 82 0.0018 28.7 3.3 7 328-334 143-149 (227)
135 KOG3894 SNARE protein Syntaxin 24.6 6.5E+02 0.014 24.4 11.0 44 265-308 233-279 (316)
136 COG4372 Uncharacterized protei 24.4 7.3E+02 0.016 24.9 13.7 84 246-333 216-307 (499)
137 KOG2546 Abl interactor ABI-1, 24.4 2.9E+02 0.0062 28.0 7.2 53 247-299 48-100 (483)
138 PF06072 Herpes_US9: Alphaherp 24.3 1.4E+02 0.0029 21.6 3.7 6 301-306 11-16 (60)
139 PF09577 Spore_YpjB: Sporulati 24.2 4.7E+02 0.01 24.2 8.2 15 321-335 204-218 (232)
140 KOG0859 Synaptobrevin/VAMP-lik 23.8 2.4E+02 0.0053 25.5 6.0 11 147-157 23-33 (217)
141 PF01519 DUF16: Protein of unk 23.6 3.9E+02 0.0085 21.5 7.9 42 255-296 54-95 (102)
142 PHA02690 hypothetical protein; 23.4 2.8E+02 0.006 21.3 5.4 13 324-336 48-60 (90)
143 PRK03814 oxaloacetate decarbox 23.3 86 0.0019 24.3 2.8 7 323-329 17-23 (85)
144 PF02532 PsbI: Photosystem II 23.3 1.4E+02 0.0031 19.2 3.2 7 318-324 2-8 (36)
145 PHA03054 IMV membrane protein; 23.0 1.1E+02 0.0024 22.9 3.1 21 315-335 43-63 (72)
146 PRK10381 LPS O-antigen length 22.9 98 0.0021 30.6 3.8 27 310-336 34-60 (377)
147 PF00523 Fusion_gly: Fusion gl 22.9 69 0.0015 32.9 2.8 18 57-74 126-143 (490)
148 PRK08307 stage III sporulation 22.8 4.8E+02 0.01 22.6 7.8 11 265-275 110-120 (171)
149 PHA02657 hypothetical protein; 22.7 1.1E+02 0.0024 23.8 3.2 17 320-336 30-46 (95)
150 PRK10600 nitrate/nitrite senso 22.6 4.2E+02 0.0091 27.2 8.6 79 259-337 66-144 (569)
151 PHA02819 hypothetical protein; 22.5 1.2E+02 0.0025 22.7 3.2 21 315-335 41-61 (71)
152 cd07625 BAR_Vps17p The Bin/Amp 22.4 6.2E+02 0.013 23.3 12.5 84 80-163 101-216 (230)
153 PF07851 TMPIT: TMPIT-like pro 22.3 6.8E+02 0.015 24.4 9.3 27 86-112 27-53 (330)
154 PF05546 She9_MDM33: She9 / Md 22.3 6E+02 0.013 23.1 9.3 9 317-325 153-161 (207)
155 TIGR02833 spore_III_AB stage I 22.3 4.9E+02 0.011 22.5 7.8 28 264-293 108-135 (170)
156 PHA02955 hypothetical protein; 21.4 93 0.002 28.3 3.0 19 314-332 178-196 (213)
157 PHA03164 hypothetical protein; 21.4 76 0.0016 24.1 2.0 21 317-337 57-77 (88)
158 COG3736 VirB8 Type IV secretor 21.0 2.1E+02 0.0045 26.6 5.3 37 299-335 24-62 (239)
159 PF10661 EssA: WXG100 protein 21.0 1.1E+02 0.0023 26.1 3.2 28 311-338 112-139 (145)
160 PF04639 Baculo_E56: Baculovir 21.0 58 0.0012 31.0 1.6 11 324-334 286-296 (305)
161 PF06015 Chordopox_A30L: Chord 21.0 2.5E+02 0.0053 21.0 4.6 34 48-81 22-55 (71)
162 PF03310 Cauli_DNA-bind: Cauli 20.9 4.6E+02 0.0099 21.7 6.7 7 303-309 61-67 (121)
163 COG4537 ComGC Competence prote 20.9 85 0.0018 25.2 2.3 16 319-334 19-34 (107)
164 PF15551 DUF4656: Domain of un 20.7 1.6E+02 0.0035 28.5 4.6 36 66-101 215-258 (370)
165 PF13800 Sigma_reg_N: Sigma fa 20.5 1.2E+02 0.0026 23.5 3.2 11 314-324 8-18 (96)
166 PF10960 DUF2762: Protein of u 20.5 83 0.0018 23.5 2.1 14 322-335 14-27 (71)
167 PF05377 FlaC_arch: Flagella a 20.4 3.3E+02 0.0071 19.4 6.0 8 284-291 30-37 (55)
168 PF13253 DUF4044: Protein of u 20.4 98 0.0021 19.9 2.1 17 319-335 12-28 (35)
169 KOG1666 V-SNARE [Intracellular 20.2 2.7E+02 0.0059 25.4 5.7 53 51-112 5-57 (220)
170 PF15168 TRIQK: Triple QxxK/R 20.1 4E+02 0.0087 20.2 6.4 21 317-337 53-73 (79)
171 PF04272 Phospholamban: Phosph 20.1 1.7E+02 0.0037 19.9 3.3 11 325-335 38-48 (52)
No 1
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-64 Score=458.29 Aligned_cols=310 Identities=41% Similarity=0.631 Sum_probs=247.5
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 019591 3 SPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMF 82 (338)
Q Consensus 3 ~~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lF 82 (338)
+++||||.||+++|.+++.+... +..+ . ..|.+.....+.+||++.|+.|+++|+.|.+||++|+.||||+++|
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~-~~~~--~---~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f 74 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNAT-RGVN--Q---ADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLF 74 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhc-cccc--c---CCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 57999999999999999988633 2222 1 1123445567899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCc-hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 83 DDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYS-QDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIK 161 (338)
Q Consensus 83 dD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~-~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk 161 (338)
||+++||.+||++||++|+.++.+|.+|+++.+.. |+.+ .+...|+++||..|+++|++++++|++|++.|++++|
T Consensus 75 ~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~---gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmk 151 (311)
T KOG0812|consen 75 DDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKAN---GNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMK 151 (311)
T ss_pred cCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHh---ccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988533 2333 6679999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhh
Q 019591 162 AHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQV 241 (338)
Q Consensus 162 ~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql 241 (338)
+++.|+++|+.+.++.++. +..+.+.-+.||..-.++.+.. ...+ ...+-++.+.. +++|+++
T Consensus 152 a~k~R~dkfs~~~a~~~a~-p~~n~~a~~~~~~~l~~~~~~~------------sq~~-~~ln~gd~~~~---qqqQm~l 214 (311)
T KOG0812|consen 152 AVKNRRDKFSASYASLNAN-PVSNSAARLHPLKLLVDPKDEA------------SQDV-ESLNMGDSSNP---QQQQMAL 214 (311)
T ss_pred HHhhHHHHhccccCCCCCc-ccCcccccCCchhhhcCchhhc------------cccc-ccccccCCCCC---HHHHHHH
Confidence 9999999998864332110 0000000011111000000000 0000 00001111111 1567777
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 019591 242 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIK 321 (338)
Q Consensus 242 ~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~ 321 (338)
+++.++|+++|..++++||++|.||++||.+||+||.+|||++.|||+||+++..||++|+.||.||+++.++|||+|++
T Consensus 215 l~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvk 294 (311)
T KOG0812|consen 215 LDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVK 294 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 019591 322 IFAVIIFFLTVFMFFVA 338 (338)
Q Consensus 322 i~~~l~i~~~~~vl~~~ 338 (338)
||+|||+||++||||++
T Consensus 295 iF~i~ivFflvfvlf~~ 311 (311)
T KOG0812|consen 295 IFGILIVFFLVFVLFLA 311 (311)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999986
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-40 Score=301.80 Aligned_cols=284 Identities=17% Similarity=0.212 Sum_probs=219.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCC--CCCCCCCC--CCC---CCCC----cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 5 YRDRTAEFRSLSQTLKKIGGATTAVDQ--PNNSFVSP--KPP---NPAS----SRSEFNKKASRIGLGIHEASQKIARLA 73 (338)
Q Consensus 5 ~~DRT~eF~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~---~~~~----~~seF~~~a~~I~~~i~~~~~kl~~L~ 73 (338)
.||||.-|..+.+++...........+ +...-.++ ... .+.. -..-|...+++|...+.++..++.+|.
T Consensus 2 tRnrT~lF~~~Rn~~~~~r~~~~~~~~~d~~~e~~~~lv~~~~~~~~~~~~d~lpP~wvd~~~ev~~~l~rvrrk~~eLg 81 (305)
T KOG0809|consen 2 TRNRTELFLLYRNNASHNRQPLGDRSGDDPVIEMATSLVNEAEEGKTVSDEDGLPPAWVDVAEEVDYYLSRVRRKIDELG 81 (305)
T ss_pred cchHHHHHHHHHhhhhhhccccccccCcchhHHhHhccccchhcCCccccccCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 699999999999998654322110000 00000000 000 0000 123499999999999999999999999
Q ss_pred HHHhhc--CCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHH
Q 019591 74 KLAKRS--SMFDDPI---VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKE 148 (338)
Q Consensus 74 ~L~kr~--~lFdD~~---~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~ 148 (338)
++|.|+ |-|+|+. .+|+.||..|+++|++|++.|+.+....+ ..++.......|++.+|..+|+.+|.+
T Consensus 82 k~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n------~~~~~e~~~~~n~~~~la~~LQ~~s~~ 155 (305)
T KOG0809|consen 82 KAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN------QLSPSERLLRKNAQGYLALQLQTLSRE 155 (305)
T ss_pred HHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999885 5599985 68999999999999999999998775332 234567778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCC
Q 019591 149 LQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNA 228 (338)
Q Consensus 149 Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 228 (338)
||..|..|+++++.++++-..|..+.. |. -. .| ++.|.+
T Consensus 156 fR~~Qs~YLK~l~~~ee~~~~~e~~~~---~~-------------~~-------------~~------------dd~d~~ 194 (305)
T KOG0809|consen 156 FRGLQSKYLKRLRNREENSQEYEDSLD---NT-------------VD-------------LP------------DDEDFS 194 (305)
T ss_pred HHHHHHHHHHHhhchhhcccchhhhcc---cc-------------cc-------------Cc------------chhhhh
Confidence 999999999999999888876654321 10 00 00 000111
Q ss_pred CchhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 229 PSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 308 (338)
Q Consensus 229 ~~~~~~~~~Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka 308 (338)
+ ...+++|+++.+.++.++.+|++||.+|..+|.||++||+||+.||.+||++|||||||||++..+|+.|.+||.||
T Consensus 195 ~--~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 195 D--RTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred h--hhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 1 11234566667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHh
Q 019591 309 LNQISSNRWLMIKIFAVIIFFLTVFMFFV 337 (338)
Q Consensus 309 ~~~~~~~r~~~~~i~~~l~i~~~~~vl~~ 337 (338)
..|++++++++|+.+++++||++++++++
T Consensus 273 e~yQk~~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 273 ERYQKRNKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred HHHHhcCCceEehHHHHHHHHHHHHHHHh
Confidence 99999999888888888888888888765
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-27 Score=221.85 Aligned_cols=246 Identities=21% Similarity=0.278 Sum_probs=166.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 019591 46 SSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSM---FDDP--IVEIQELTALIKDDITALNMALSDLQTLQNLEIVE 120 (338)
Q Consensus 46 ~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~l---FdD~--~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~ 120 (338)
..+++|++.+++|..+|..+...+++|.++|.+ .+ =.|+ ..+++.++..|+..-..++..|..+.........
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~-~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~- 110 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSK-SLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADET- 110 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 679999999999999999999999999999943 22 2222 2455666665555555555555554432221110
Q ss_pred CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cCCCcccccCCCCCCCCCCCCCCCC
Q 019591 121 GNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANA-LRDSPFRQHAQPVTEPPPWSSPVNA 199 (338)
Q Consensus 121 g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+......+++.+-...+..+|.+++.+|..++..|.++.|.+-.|+ .|...+ ..+...+
T Consensus 111 ~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rq-l~i~~~~~~~de~i------------------ 171 (297)
T KOG0810|consen 111 QNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQ-LFIVGGEETTDEEI------------------ 171 (297)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCCcCChHHH------------------
Confidence 01123334555566666779999999999999999999999888877 343332 1110000
Q ss_pred CCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 200 SESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQ---VVPRQENYSQSRAVALHNVESTITELGGIFTHLATM 276 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~q---l~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~m 276 (338)
+..++.| |+ +.+++--++ ........+++|+.+|..||++|.||++||.|||+|
T Consensus 172 -----e~~ie~g----~~--------------~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~L 228 (297)
T KOG0810|consen 172 -----EEMIESG----GS--------------EVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVL 228 (297)
T ss_pred -----HHHHHCC----Ch--------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 001111111 112346789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 019591 277 VAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 277 V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~l~i~~~~~vl 335 (338)
|..||||||+||+||++|..||+.|..+|.+|..|++++|++.|+++++++|+++++|+
T Consensus 229 Ve~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~ 287 (297)
T KOG0810|consen 229 VESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVV 287 (297)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888874433333333333433333
No 4
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.93 E-value=2.2e-23 Score=189.80 Aligned_cols=233 Identities=17% Similarity=0.243 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCc
Q 019591 50 EFNKKASRIGLGIHEASQKIARLAKLAKRSS--MFDDPI---VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYS 124 (338)
Q Consensus 50 eF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~--lFdD~~---~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~ 124 (338)
-|...+..|...+..+..+...|.+.+++.+ .|.|+. .+|++|+..|.+++.+|.+-++..-....... .
T Consensus 35 ~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~~-----~ 109 (283)
T COG5325 35 TFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSSF-----L 109 (283)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 4889999999999999999999999888764 499975 68999999999999999999985433222111 0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 019591 125 QDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQ 204 (338)
Q Consensus 125 ~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (338)
....-...|...+...+.+.-+..||+-+..|.+.+ +. . .....|...
T Consensus 110 ~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l------~~---~-~~~~~~l~e---------------------- 157 (283)
T COG5325 110 QSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFL------RN---K-NNDQHPLEE---------------------- 157 (283)
T ss_pred HHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHH------Hh---c-ccccCchhh----------------------
Confidence 011112225666677788888888888877666654 11 0 000011000
Q ss_pred CCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 205 PSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVV----PRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQ 280 (338)
Q Consensus 205 ~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql~----~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Q 280 (338)
+.+... .+ .++++ .+.+|..+. +.+...+.+|.++|.+|+++|.||++||+||+++|.+|
T Consensus 158 ---------ee~e~~-----~~-~~~sq-~~lqq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQ 221 (283)
T COG5325 158 ---------EEDEES-----LS-SLGSQ-QTLQQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQ 221 (283)
T ss_pred ---------hhhhhh-----hh-ccchh-hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 00 01111 123333333 33555689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 019591 281 GELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 281 ge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~l~i~~~~~vl 335 (338)
|+.|||||+|++++..|.+.|.+||.||-+++++.++|-...+++|+|+++|+++
T Consensus 222 G~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~l 276 (283)
T COG5325 222 GELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVSL 276 (283)
T ss_pred hhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887766554443334444444444443
No 5
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-22 Score=186.36 Aligned_cols=242 Identities=19% Similarity=0.236 Sum_probs=145.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 019591 46 SSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIV---EIQELTALIKDDITALNMALSDLQTLQNLEIVEGN 122 (338)
Q Consensus 46 ~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~---eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~ 122 (338)
....+|...+.+|+..|..+......|.+.+..-+.+.|.+. .++..-..+-+.+..+...|..+.....
T Consensus 14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~------- 86 (269)
T KOG0811|consen 14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL------- 86 (269)
T ss_pred CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 456689999999999999999999999999999888888863 2333333333444444444444333221
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCC
Q 019591 123 YSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASES 202 (338)
Q Consensus 123 ~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (338)
....++......-|...+....+.|..++..-.+..| ..+...+.. .+..
T Consensus 87 --~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek------~~~~a~~s~----------------------~s~~ 136 (269)
T KOG0811|consen 87 --ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK------IPMVARGSQ----------------------NSQQ 136 (269)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------ccccccccc----------------------cchh
Confidence 1122334444444444444444444444433333222 000000000 0000
Q ss_pred CCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 203 SQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVV---PRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQ 279 (338)
Q Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql~---~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~ 279 (338)
+... ++...+-+. ..+..+.+.+.|.|.. +.+...+++|+++|++||..|.||++||+||+.||++
T Consensus 137 ~~~~--~~~~~~~~~---------~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~e 205 (269)
T KOG0811|consen 137 LDEE--SPRVDELSN---------NGSQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHE 205 (269)
T ss_pred hhhh--hhhhhhhhc---------cchhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000000 0011110001222222 2467788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHHH
Q 019591 280 QGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW--LMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 280 Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~--~~~~i~~~l~i~~~~~vl 335 (338)
||++||.||+||++|..||+.|..+|.||..|++++|+ |++++|++++++++++++
T Consensus 206 QG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~lii~l~i 263 (269)
T KOG0811|consen 206 QGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGLIIGLII 263 (269)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887766653 444445555555554444
No 6
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.83 E-value=2.1e-18 Score=153.31 Aligned_cols=235 Identities=16% Similarity=0.225 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCch
Q 019591 49 SEFNKKASRIGLGIHEASQKIARLAKLAKRSSM--FDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVE-GNYSQ 125 (338)
Q Consensus 49 seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~l--FdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~-g~~~~ 125 (338)
.-|...-..|.+.++.....+.....||+.... |. ++...++..+...-.+-..||...+..... ...+-
T Consensus 21 ~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e-------~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i 93 (280)
T COG5074 21 VTFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFE-------EQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI 93 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 345558889999999999999999998886422 32 223333333333333333333322211100 00000
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 019591 126 DRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQP 205 (338)
Q Consensus 126 ~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (338)
+. ...+.-....+.||.++-.+|+.+...|-+..+.+..|. .....+..+.. .++
T Consensus 94 hl-~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQ-y~Ia~P~ATEd----------------------eve- 148 (280)
T COG5074 94 HL-ANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQ-YIIAQPEATED----------------------EVE- 148 (280)
T ss_pred ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-hhhcCCccchH----------------------HHH-
Confidence 11 112334455688999999999999999998887655444 32221111100 000
Q ss_pred CCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 206 SALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVV-------PRQENYSQSRAVALHNVESTITELGGIFTHLATMVA 278 (338)
Q Consensus 206 ~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql~-------~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~ 278 (338)
..+.+..+++. ..|-.+- ...-.++++|+.+|.+||++|.||.+||+||++||.
T Consensus 149 -----------------~aInd~nG~qv--fsqalL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~ 209 (280)
T COG5074 149 -----------------AAINDVNGQQV--FSQALLNANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVI 209 (280)
T ss_pred -----------------HHhcccchHHH--HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 1122221 012467899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHHHHH
Q 019591 279 QQGELAIRIDDNMDESLANVEGARNALLRHLNQ---ISSNRWLMIKIFAVIIFFLTVFM 334 (338)
Q Consensus 279 ~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~---~~~~r~~~~~i~~~l~i~~~~~v 334 (338)
+|.|+||.|+.|++++..||++|+.++.+|..+ .+++||.|+.|++++|+|+++||
T Consensus 210 eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 210 EQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred hhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999998764 46677877777777777666665
No 7
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7e-11 Score=110.28 Aligned_cols=303 Identities=14% Similarity=0.088 Sum_probs=169.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 019591 6 RDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDP 85 (338)
Q Consensus 6 ~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~ 85 (338)
+|+|..|...|...+..++++.+. .+.+.+. .-+++.+...|...|.++=..|.+..--|-+..+-+. .|.-.
T Consensus 1 ~d~t~~fk~sv~~i~~~~k~~~~~---~~~~~~~-~~~~~~~~~~f~~~a~~~~~~i~~l~~fl~e~rk~y~---d~~mt 73 (316)
T KOG3894|consen 1 SDITPIFKASVATVDDARKAQNGG---DAHVERK-QEDFPNPKEDFEKFADEVIKEIARLRKFLLEHRKDYK---DFRMT 73 (316)
T ss_pred CcchHHHHHHHHHHHHhccccccC---CCCcchh-hcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHhhh
Confidence 599999999999998876553211 1112222 4456778999999999998888877766666665444 22111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 86 IVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHES 165 (338)
Q Consensus 86 ~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~ 165 (338)
..|=...-.++---+..|...|..+..+.... .+.+...|...|...|..-+++.-+.+-..--.+.++.- .+.
T Consensus 74 d~ekd~id~e~~~fi~~~t~~~~~l~~~~~~~-----h~~~~~~~~~~i~~~l~~l~k~~~~~~s~~~k~rV~~~l-~~~ 147 (316)
T KOG3894|consen 74 DAEKDEIDQECRLFIQQYTEKIEQLINYEMEE-----HSLQLERFQDAVLRWLGILLKRNENTYSVQHKQRVENEL-SEK 147 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHH
Confidence 12333333444455666666666555443321 246677888877666654444333222221111111111 111
Q ss_pred HHh---hhh-c-cccCC-CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHH
Q 019591 166 RKQ---IFS-A-NALRD-SPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQ 239 (338)
Q Consensus 166 R~~---~f~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ 239 (338)
|-. .+- . ..+.. .+. ...+ +...++....+.+..+.. ..+.+.|. ....+..+. .+..|+
T Consensus 148 rl~vl~~~~~~~~~s~~~~~~-~~~~--~~~~~en~~~~~~~~~~s----~~~~e~~~----~~~~~~e~~---~s~e~~ 213 (316)
T KOG3894|consen 148 RLSVLACLDIKYVESKFQTIQ-NERL--SKDNKENTLSERADDNRS----LADSELGQ----DEEKHYEDP---LSKEQV 213 (316)
T ss_pred HHhhHhhcchhhccCchhhhh-hhcc--hhhhHHHHHhhcchhhhc----ccchhhcC----cccccCCcc---ccHHHH
Confidence 110 000 0 00000 000 0000 000000000000000000 00011111 011111111 123456
Q ss_pred hhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019591 240 QVVPRQ----ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSN 315 (338)
Q Consensus 240 ql~~~~----~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~ 315 (338)
|+++.. ...+.+-.+++++|++.+.|++.|-.-|+.+|.+|..-||.|-+++..+..||++|+++|.||.....+.
T Consensus 214 Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~ 293 (316)
T KOG3894|consen 214 QLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGL 293 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccc
Confidence 665442 3445566789999999999999999999999999999999999999999999999999999999988777
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 019591 316 RWLMIKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 316 r~~~~~i~~~l~i~~~~~vl~ 336 (338)
|.+++ +|++++-|+++|+.+
T Consensus 294 r~~~l-f~llvlsf~lLFldw 313 (316)
T KOG3894|consen 294 RVFLL-FFLLVLSFSLLFLDW 313 (316)
T ss_pred hhHHH-HHHHHHHHHHHHHhh
Confidence 74333 477888999999875
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.43 E-value=1.5e-12 Score=95.32 Aligned_cols=63 Identities=29% Similarity=0.435 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019591 251 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQIS 313 (338)
Q Consensus 251 ~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~ 313 (338)
+|++++..|+.+|.+|++||.+|+.+|.+|+++||+|++||+.|..+|..|..+|.+|.+++|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999999999999999999999999999998764
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.33 E-value=5.9e-12 Score=90.69 Aligned_cols=59 Identities=42% Similarity=0.551 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 308 (338)
Q Consensus 250 ~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka 308 (338)
++|++++..|+.+|.+|++||.+|+.+|.+||++||+|++|++.+..+++.|..+|.||
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58899999999999999999999999999999999999999999999999999999875
No 10
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.23 E-value=6.5e-11 Score=86.68 Aligned_cols=63 Identities=32% Similarity=0.480 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 246 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 308 (338)
Q Consensus 246 ~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka 308 (338)
..++++|++++.+|+.+|.+|++||.+|+.+|.+|+++||+|++|++.+..++..|...|.||
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999999999999999999999764
No 11
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.81 E-value=1e-07 Score=75.68 Aligned_cols=98 Identities=23% Similarity=0.235 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDD----PIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNY 123 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD----~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~ 123 (338)
+++|++.+++|...|..+..++.+|..||++.....+ ...+|+.||..|++.+..|+..|+.|+......
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~------ 75 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS------ 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Confidence 4789999999999999999999999999988544333 247999999999999999999999998764311
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 124 SQDRVVHSTTVCDDLKSKLMGATKELQDVL 153 (338)
Q Consensus 124 ~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l 153 (338)
....+..+++..++..+..++..|++++
T Consensus 76 --~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 --EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp --HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1123455666677777777777777653
No 12
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=6.1e-06 Score=75.62 Aligned_cols=214 Identities=17% Similarity=0.224 Sum_probs=126.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhh
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDR 127 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~ 127 (338)
..+|+..-.++.+..+.+.....+-..+.+. -..+++++|..|+..|...-..|+.+..........-....-+
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~------~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~E 78 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKD------TGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFE 78 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHH
Confidence 3457776665555555444444443333333 2567888888888777777777766555443221110112345
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 019591 128 VVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSA 207 (338)
Q Consensus 128 ~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (338)
..-+..-+..+.+++.++-..|... ..... ..|.-.. .| +...+ .+
T Consensus 79 l~~R~~~i~~lr~q~~~~~~~~~~~--~~~~~----~~r~~l~-------~~------------~~~~~-----~~---- 124 (235)
T KOG3202|consen 79 LSRRRRFIDNLRTQLRQMKSKMAMS--GFANS----NIRDILL-------GP------------EKSPN-----LD---- 124 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--ccccc----cchhhhc-------CC------------CCCCc-----hh----
Confidence 5667788888888888887777661 00000 0011000 00 00000 00
Q ss_pred CCCCCCccCcccccCCcCCCCCchhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 208 LPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRI 287 (338)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrI 287 (338)
..+....+-|. - +...+.|+|++ ++-++....|+.+|.-+..+=..++.=+.+||.+||..
T Consensus 125 ---------~~~~~~~~~D~-v--~~~~~~qqqm~-------~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl 185 (235)
T KOG3202|consen 125 ---------EAMSRASGLDN-V--QEIVQLQQQML-------QEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDL 185 (235)
T ss_pred ---------hhHHHhhccCc-H--HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 00000001110 0 11123344444 44466788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHH
Q 019591 288 DDNMDESLANVEGARNALLRHLNQISSNR-WLMI 320 (338)
Q Consensus 288 d~nv~~a~~~v~~g~~eL~ka~~~~~~~r-~~~~ 320 (338)
++-++.+...+..+.+.|.|-....++++ ||++
T Consensus 186 ~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~i 219 (235)
T KOG3202|consen 186 DNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAI 219 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 99999999999999999999988655555 4444
No 13
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=98.55 E-value=5.3e-06 Score=70.87 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--C--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDD--P--IVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNY 123 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD--~--~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~ 123 (338)
+++|+..+..|...|..+...+..|..|++.-..-.| + ...++.+...|+..+..+...|+.|......... ..
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~--~~ 78 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEA--LN 78 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cC
Confidence 3689999999999999999999999999987443333 2 2578899999999999999999888765432211 11
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019591 124 SQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSA 172 (338)
Q Consensus 124 ~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~ 172 (338)
+....++..+.+..|..+|+++...|+.++..|.+.+|.+-.|+-+...
T Consensus 79 ~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~ 127 (151)
T cd00179 79 GSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITG 127 (151)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456778889999999999999999999999999999999998855543
No 14
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=98.45 E-value=9.3e-06 Score=66.18 Aligned_cols=110 Identities=20% Similarity=0.179 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDP----IVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNY 123 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~----~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~ 123 (338)
+.+|+..++.|..+|..+...+.+|..|++....-.|. ...++.+...|+.....++..|+.|......... .
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~---~ 79 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA---S 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc---c
Confidence 57899999999999999999999999999875443322 2466777777777777777777776654322111 1
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 124 SQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENI 160 (338)
Q Consensus 124 ~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~l 160 (338)
+....+...+++..|..+|++++..|++++..|.+.+
T Consensus 80 ~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 80 GSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2345678889999999999999999999999887754
No 15
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.014 Score=55.55 Aligned_cols=209 Identities=13% Similarity=0.144 Sum_probs=138.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 82 FDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIK 161 (338)
Q Consensus 82 FdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk 161 (338)
.++...+|......||..+..+.+.+......... . ..+.....+...+-..|...+.+....+.+..+.|-+.++
T Consensus 80 l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~--~--~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~ 155 (297)
T KOG0810|consen 80 LESLVDEIRRRARKIKTKLKALEKENEADETQNRS--S--AGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQ 155 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--C--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667899999999999999999999887653321 1 1234444444455567777666666666666666666666
Q ss_pred HHHHHHhh-hhccccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHh
Q 019591 162 AHESRKQI-FSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQ 240 (338)
Q Consensus 162 ~~~~R~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~q 240 (338)
.+-.-... -.... .-....... ....|....+. + .+ +....
T Consensus 156 Rql~i~~~~~~~de-~ie~~ie~g--------------~~~~f~~~~i~----------------~--~~-----~~~~~ 197 (297)
T KOG0810|consen 156 RQLFIVGGEETTDE-EIEEMIESG--------------GSEVFTQKAIQ----------------D--RG-----QAKQT 197 (297)
T ss_pred HHHhhhCCCcCChH-HHHHHHHCC--------------ChHHHHHHHHH----------------H--hh-----hhHHH
Confidence 66443322 11100 000000000 00011000000 0 00 01111
Q ss_pred h--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 019591 241 V--VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 318 (338)
Q Consensus 241 l--~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~ 318 (338)
+ +..--..+..-++.|.++..--.+++.|-..=+.||..=...|.+-..+|+.+..+|+.| .+|..+.++.+|+
T Consensus 198 l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kA----v~~qkkaRK~k~i 273 (297)
T KOG0810|consen 198 LAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKA----VKYQKKARKWKII 273 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhceee
Confidence 1 233456788889999999999999999999999999999999999999999999999999 5888888899998
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019591 319 MIKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 319 ~~~i~~~l~i~~~~~vl~ 336 (338)
||++++|+++++++++++
T Consensus 274 ~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 274 IIIILIIIIVVLVVVIVV 291 (297)
T ss_pred eehHHHHHHHHHhhhhcc
Confidence 888888888888877764
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.28 E-value=0.01 Score=46.21 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 254 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301 (338)
Q Consensus 254 ~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g 301 (338)
+.+.+|+..+.|+.++..+=-..+.+-|+-++.+++..++-...-+.-
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F 50 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQF 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHH
Confidence 457788889999998888877888899999999998877655544433
No 17
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.004 Score=50.53 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHH
Q 019591 251 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI-KIFAVIIFF 329 (338)
Q Consensus 251 ~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~-~i~~~l~i~ 329 (338)
|=++++..+.+-|.-|..+--++..=|..|.-++|.+|+..+.+.....+.-..+..-.+. ++++++| .+++++++|
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAF 110 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 3467788888889999999999999999999999999999999999999998888654444 4444333 344445555
Q ss_pred HHHHH
Q 019591 330 LTVFM 334 (338)
Q Consensus 330 ~~~~v 334 (338)
|++|+
T Consensus 111 fi~~~ 115 (118)
T KOG3385|consen 111 FILWV 115 (118)
T ss_pred HHhhe
Confidence 55544
No 18
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=96.86 E-value=0.066 Score=42.45 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHH
Q 019591 58 IGLGIHEASQKIARLAKLAKRSSMFDDPI---VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTV 134 (338)
Q Consensus 58 I~~~i~~~~~kl~~L~~L~kr~~lFdD~~---~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nV 134 (338)
|+..|..+...+..|.++.+.-+...|.+ ..|..+...+.+.+..+...|..|..... ......+....
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~--------~~~~~~~~k~~ 72 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSS--------DRSNDRQQKLQ 72 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH------------HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhhhHHHHHH
Confidence 57788999999999999999887778876 57889999999999999999988877611 12334555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 135 CDDLKSKLMGATKELQDVLTTRTENIK 161 (338)
Q Consensus 135 v~~L~~kL~~~s~~Fr~~l~~r~~~lk 161 (338)
..-|..-+..+...|..++..|.+..+
T Consensus 73 ~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 73 REKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666777777777777777776666554
No 19
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.029 Score=52.72 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=74.5
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 019591 238 LQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 317 (338)
Q Consensus 238 Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~ 317 (338)
++.+++.-..-+.+=+..|..+..-..+|+.|-++=+.+|..=.+-|++-..||+++..++.+|...=.++.... --.
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~--~~l 248 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK--CIL 248 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hhh
Confidence 344455566778888899999999999999999999999999999999999999999999999987765555433 555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019591 318 LMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 318 ~~~~i~~~l~i~~~~~vl 335 (338)
+|+.++++++|+++++..
T Consensus 249 l~v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 249 LLVGGPVGLIIGLIIAGI 266 (269)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 666666666666666554
No 20
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.033 Score=45.45 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 253 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMD 292 (338)
Q Consensus 253 ~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~ 292 (338)
.+.+++++..+.|+-+|+++=-.=|.|-|+-|+.+++-.+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad 67 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRAD 67 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHH
Confidence 3456677788888999999988889999999998886544
No 21
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=96.79 E-value=0.00044 Score=42.13 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=16.9
Q ss_pred CCCCCchHHHHHHHHHHHhhcCC
Q 019591 3 SPYRDRTAEFRSLSQTLKKIGGA 25 (338)
Q Consensus 3 ~~~~DRT~eF~~~~~~~~~~~~~ 25 (338)
++++|||.||+.||.++.+++..
T Consensus 2 ~~IqdRT~EFqqcV~s~~k~nk~ 24 (29)
T PF11416_consen 2 TSIQDRTIEFQQCVSSYKKRNKK 24 (29)
T ss_dssp -HHHB-HHHHHHHHHHHHHH---
T ss_pred cchhHhhHHHHHHHHHHHHHHhh
Confidence 36899999999999999887743
No 22
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.74 E-value=0.037 Score=51.54 Aligned_cols=75 Identities=20% Similarity=0.391 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 019591 253 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLT 331 (338)
Q Consensus 253 ~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~l~i~~~ 331 (338)
.+++-.+.+.+-+=+..| +..+.+-..+|++.+..++.....+......|.++.. .+.+.|++++|++|+++|++
T Consensus 169 ~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~-~~~~~~~~~~i~~v~~~Fi~ 243 (251)
T PF09753_consen 169 TEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSS-KSWGCWTWLMIFVVIIVFIM 243 (251)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH
Confidence 445555666555555544 5588999999999999999999999999999987654 33444444444444444443
No 23
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=1.5 Score=39.68 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 019591 251 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFL 330 (338)
Q Consensus 251 ~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~l~i~~ 330 (338)
.|..+-.+|.-.-.+|| ..+-.=.+.|.+.|.|--+-.-++..||..+.+-|.--..+.-.|||++-.|++ +++++
T Consensus 135 ~rl~ds~Ria~ETEqIG---~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~-~l~~~ 210 (220)
T KOG1666|consen 135 DRLKDSQRIALETEQIG---SEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIA-LLVLA 210 (220)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44445555554444454 233344466999999999999999999999999998888888899997765544 33444
Q ss_pred HHHHHHh
Q 019591 331 TVFMFFV 337 (338)
Q Consensus 331 ~~~vl~~ 337 (338)
+++|||+
T Consensus 211 il~ilY~ 217 (220)
T KOG1666|consen 211 ILLILYS 217 (220)
T ss_pred HHHHHHH
Confidence 4555553
No 24
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.75 E-value=0.13 Score=47.00 Aligned_cols=89 Identities=7% Similarity=0.107 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 019591 246 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAV 325 (338)
Q Consensus 246 ~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~ 325 (338)
-..|..-++.|.+|.+-..++.++..+=..+|.-=..-+..-..|+++...+++.|.+.. .|.+.++=..|.||+|+++
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avksa-RaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSA-RAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHH-HHHHhcceehhhhHHHHHH
Confidence 456667777788888888888888888888888777778888999999999999999994 5566666778888877776
Q ss_pred HHHHHHHHHH
Q 019591 326 IIFFLTVFMF 335 (338)
Q Consensus 326 l~i~~~~~vl 335 (338)
+|+.+++=|+
T Consensus 263 viv~vv~~v~ 272 (280)
T COG5074 263 VIVVVVFKVV 272 (280)
T ss_pred HHHHHHhccc
Confidence 6666664333
No 25
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.40 E-value=0.27 Score=46.02 Aligned_cols=90 Identities=14% Similarity=0.306 Sum_probs=76.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 019591 241 VVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI 320 (338)
Q Consensus 241 l~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 320 (338)
+..+-+..|..-++.|.++..--.+|+.+..+=+.+|.-=+.-|+.+-.|+..|......|.. +.++.++.|.+++
T Consensus 189 l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~----hqrrt~k~~~~~L 264 (283)
T COG5325 189 LITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPA----HQRRTKKCRFYLL 264 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHH----HHhhhccchhhHH
Confidence 344556788888999999999999999999999999999999999999999999999999974 5667778888888
Q ss_pred HHHHHHHHHHHHHH
Q 019591 321 KIFAVIIFFLTVFM 334 (338)
Q Consensus 321 ~i~~~l~i~~~~~v 334 (338)
++|+|++.|+++.+
T Consensus 265 lil~vv~lfv~l~~ 278 (283)
T COG5325 265 LILLVVLLFVSLIK 278 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877666666554
No 26
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=95.12 E-value=0.14 Score=39.63 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 6 RDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKLA 76 (338)
Q Consensus 6 ~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~ 76 (338)
.|+|..|+.||...+......+. .........++.....+|...|.+|...|.++..-|.+...-+
T Consensus 1 ~DlT~lF~~~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~Y 66 (87)
T PF10496_consen 1 TDLTPLFKACVKIIRTENKASGK-----APSDSSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAY 66 (87)
T ss_pred CCccHHHHHHHHHHHhhcccccc-----ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999865533220 0111223345567899999999999999998887777766643
No 27
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=3 Score=37.91 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKR-SSMFDDPI-------VEIQELTALIKDDITALNMALSDLQTLQNLEIV 119 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr-~~lFdD~~-------~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~ 119 (338)
+...-+.|..+..+| ..||....+|... ++-|++.. ..-..+...|+..+..+..-++.+.. +. .
T Consensus 7 we~LRkqArslE~~l---d~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~--~- 79 (231)
T KOG3208|consen 7 WEALRKQARSLENQL---DSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CA--S- 79 (231)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hc--c-
Confidence 344445555655554 4677777777765 33355442 13344666666667666666666555 11 1
Q ss_pred cCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 120 EGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTT 155 (338)
Q Consensus 120 ~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~ 155 (338)
++....+..-.+.--+..|++.+.+|+.+...
T Consensus 80 ----s~a~~aa~~htL~RHrEILqdy~qef~rir~n 111 (231)
T KOG3208|consen 80 ----SPANSAAVMHTLQRHREILQDYTQEFRRIRSN 111 (231)
T ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222223444457799999999999754
No 28
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=93.92 E-value=2.1 Score=33.49 Aligned_cols=59 Identities=12% Similarity=0.277 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 019591 276 MVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 276 mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~l~i~~~~~vl 335 (338)
.+.+|-+.+..+.+-......-+..+.+=+.++.++....||+++..| .+++..++||+
T Consensus 30 ~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~-~~f~~~v~yI~ 88 (92)
T PF03908_consen 30 TLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAF-LFFLLVVLYIL 88 (92)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh
Confidence 445677777777777777777888888878777777777777665333 23334444444
No 29
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=91.04 E-value=6.4 Score=30.97 Aligned_cols=91 Identities=12% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCchh
Q 019591 50 EFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVE---GNYSQD 126 (338)
Q Consensus 50 eF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~---g~~~~~ 126 (338)
+|+....+|...|..+...+.....+..-.+ ...++..++..++..+..+...|..|+....--... -+.+..
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~ 77 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSDTS----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHH
Confidence 5899999999999977766666555544433 678899999999999999999998888765421110 012334
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 019591 127 RVVHSTTVCDDLKSKLMG 144 (338)
Q Consensus 127 ~~~h~~nVv~~L~~kL~~ 144 (338)
+-.-+...|..++.++.+
T Consensus 78 Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 78 EISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455566666665554
No 30
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=90.33 E-value=8.2 Score=35.23 Aligned_cols=62 Identities=8% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 019591 258 NVESTITELGGIFTHLAT----MVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI 320 (338)
Q Consensus 258 ~ie~~i~eL~~if~~la~----mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 320 (338)
+|..++.-|+.-|+..+. -+.+-.+++-+-..-++....-..-...-+.+|.++.. .-|+.+
T Consensus 155 eLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~-s~wf~~ 220 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL-SYWFYI 220 (244)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh-hHHHHH
Confidence 344444445544444332 23333344444333344433334444444445544443 345444
No 31
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=88.62 E-value=12 Score=34.81 Aligned_cols=77 Identities=10% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHHHHHHHHHHHHHH
Q 019591 257 HNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL---NQISSNRWLMIKIFAVIIFFLTVF 333 (338)
Q Consensus 257 ~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~---~~~~~~r~~~~~i~~~l~i~~~~~ 333 (338)
++|...|..|+.-.++=+... +..|..=..-++.+...++.-..-|..+- ....++.|.|+.++++++||++|+
T Consensus 166 E~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 166 EDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 367777777776666544443 33444434446666666666666666554 356666788666665555555544
Q ss_pred HHH
Q 019591 334 MFF 336 (338)
Q Consensus 334 vl~ 336 (338)
++|
T Consensus 243 ~mv 245 (251)
T PF09753_consen 243 MMV 245 (251)
T ss_pred HHH
Confidence 443
No 32
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.75 E-value=24 Score=32.02 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 87 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESR 166 (338)
Q Consensus 87 ~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R 166 (338)
.+|..+-..|..+|..+...+..+....... +....+....+ +..|...+..+-..-+...+.+.++.+.-++|
T Consensus 29 ~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~e---pp~~rq~~rlr---~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er 102 (213)
T KOG3251|consen 29 QEVSAVENSIQRSIDQYASRCQRLDVLVSKE---PPKSRQAARLR---VDQLLEDVEHLQTSLRTSMNRNNRREQQARER 102 (213)
T ss_pred cchHHHHHHHHHhHHHHHHHHHHHHhHhhcC---CCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6788888888888888888888887765432 12233444444 77888888888888888877777777666665
Q ss_pred Hh
Q 019591 167 KQ 168 (338)
Q Consensus 167 ~~ 168 (338)
..
T Consensus 103 ~~ 104 (213)
T KOG3251|consen 103 VE 104 (213)
T ss_pred HH
Confidence 43
No 33
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.33 E-value=3.4 Score=39.01 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 251 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 307 (338)
Q Consensus 251 ~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~k 307 (338)
+-++.+.+|-..+..|-.|=-+|++=|..|.+.||||.++|+....+|+..+.-+.|
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 345667777777888888888999999999999999999999999999999887754
No 34
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.31 E-value=2.9 Score=34.27 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 019591 293 ESLANVEGARNALL 306 (338)
Q Consensus 293 ~a~~~v~~g~~eL~ 306 (338)
.+....+.+...|+
T Consensus 71 ~~as~F~~~A~klk 84 (116)
T KOG0860|consen 71 AGASQFEKTAVKLK 84 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444454
No 35
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=85.35 E-value=1.4 Score=31.85 Aligned_cols=10 Identities=0% Similarity=0.514 Sum_probs=4.0
Q ss_pred HhcccchHHH
Q 019591 311 QISSNRWLMI 320 (338)
Q Consensus 311 ~~~~~r~~~~ 320 (338)
+.++.+|+++
T Consensus 34 ~~~~~~~i~~ 43 (59)
T PF09889_consen 34 RMRKTQYIFF 43 (59)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 36
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=84.22 E-value=31 Score=31.61 Aligned_cols=88 Identities=11% Similarity=0.168 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE----------------SLANVEGARNALLRHLN 310 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~----------------a~~~v~~g~~eL~ka~~ 310 (338)
+....|+++.++|-+++.+=..=|.+-+.-+ |-.-++-|-.+++. .....++...++.++..
T Consensus 64 ~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~--~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E 141 (230)
T PF03904_consen 64 EKQDIREKNLKEIKSSLEETTKDFIDKTEKV--HNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHE 141 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778888888888888777777665433 44444444433332 22223333333333333
Q ss_pred -HhcccchHHHHHHHHHHHHHHHHHHH
Q 019591 311 -QISSNRWLMIKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 311 -~~~~~r~~~~~i~~~l~i~~~~~vl~ 336 (338)
+++.-+|++-.|.++++||++|.+|+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44445566655555555555555554
No 37
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=81.60 E-value=2.6 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=20.7
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 019591 308 HLNQISSNRWLMIKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 308 a~~~~~~~r~~~~~i~~~l~i~~~~~vl~ 336 (338)
+.+++++-++...++++++++|+++++++
T Consensus 28 ~~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777888888888877777654
No 38
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=81.51 E-value=87 Score=34.22 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 019591 254 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAV 325 (338)
Q Consensus 254 ~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~ 325 (338)
..+..+.+.+..+..-+.+++..+..+ +...+..-..++...+.....+..+|. ..||++.+++.+
T Consensus 357 ~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~----~yR~~~~lil~~ 422 (806)
T PF05478_consen 357 DVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYD----SYRWIVGLILCC 422 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHH----HHHHHHHHHHHH
Confidence 344455566666666666666666555 444455555555555555555555544 447766544443
No 39
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.07 E-value=15 Score=34.87 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=65.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcccc-hH
Q 019591 243 PRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN---QISSNR-WL 318 (338)
Q Consensus 243 ~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~---~~~~~r-~~ 318 (338)
+.+...+++-++.+.+=|+.|..|.+=-.||+++..+=+.||-.==.-|+...-||+.-...+..|.+ +.-... +-
T Consensus 200 e~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~ 279 (305)
T KOG0809|consen 200 EQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRN 279 (305)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcC
Confidence 34455566667778888888999988888999999888888876666788888899999888888865 333333 33
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019591 319 MIKIFAVIIFFLTVFMFFV 337 (338)
Q Consensus 319 ~~~i~~~l~i~~~~~vl~~ 337 (338)
--+.+++++++++||++|+
T Consensus 280 ~k~~~i~~L~l~ii~llvl 298 (305)
T KOG0809|consen 280 KKMKVILMLTLLIIALLVL 298 (305)
T ss_pred CceEehHHHHHHHHHHHHH
Confidence 3444444444444444443
No 40
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=76.27 E-value=32 Score=26.29 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITEL 266 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL 266 (338)
+.+-+|.+.+..++..-.+|
T Consensus 24 ~~ll~Rge~L~~L~~kt~~L 43 (89)
T PF00957_consen 24 DKLLERGEKLEELEDKTEEL 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHH
Confidence 33444555444444433333
No 41
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=75.33 E-value=1.3e+02 Score=32.85 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019591 92 LTALIKDDITALNMALSDLQT 112 (338)
Q Consensus 92 Lt~~Ik~~i~~l~~~I~~Lq~ 112 (338)
-+.+++..+..++....+|+.
T Consensus 247 ~~~~~~~~L~~v~~~~~~L~~ 267 (806)
T PF05478_consen 247 AMQETKELLQNVNSSLKDLQE 267 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 42
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.08 E-value=31 Score=25.51 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=17.5
Q ss_pred HHHHHHHHHhccc-chHHHHHHHHHHHHHHHHH
Q 019591 303 NALLRHLNQISSN-RWLMIKIFAVIIFFLTVFM 334 (338)
Q Consensus 303 ~eL~ka~~~~~~~-r~~~~~i~~~l~i~~~~~v 334 (338)
.++.+-....+.+ +|++-.|++.++.+++.|+
T Consensus 37 ~~~~~~l~~I~~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 37 KNLNKQLEKIKSNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443 6777666666666665554
No 43
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.85 E-value=67 Score=30.59 Aligned_cols=45 Identities=7% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 256 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 256 i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
|.+|=.-..+|+.|..+=..+|.-=++-+|.+|-||+.|...+-+
T Consensus 236 IsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellK 280 (311)
T KOG0812|consen 236 ISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLK 280 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHH
Confidence 333333344444444444444444445555555565555554433
No 44
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=71.45 E-value=35 Score=24.48 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 256 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL 309 (338)
Q Consensus 256 i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~ 309 (338)
+.+-.+.+.|.-++=.+...-...|++.|.++...+.++..++..+..-|.+-.
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444555555566667788999999999999999999999988776543
No 45
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=70.19 E-value=1.2e+02 Score=30.13 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 257 HNVESTITELGGIF-THLATMVAQQGELAIRIDDNMDESLANVEGARNALL 306 (338)
Q Consensus 257 ~~ie~~i~eL~~if-~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ 306 (338)
..+|..+++|-++- +++++|=+++.-|=.|++|.-.+-.-+|+.+.+-++
T Consensus 309 erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscq 359 (455)
T KOG3850|consen 309 ERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQ 359 (455)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555543 589999999999999999987776666666665443
No 46
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.37 E-value=96 Score=25.88 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchh
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAK-LAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQD 126 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~-L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~ 126 (338)
+..+.+....|++.|......|..-.+ |..|---.|++-.+..+++..|+.+...+...+..+..-..
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~----------- 106 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD----------- 106 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------
Confidence 344556666777777766666555433 33333336777788888888888888888888876654221
Q ss_pred hHhHHHHHHHHHHHHHHHH
Q 019591 127 RVVHSTTVCDDLKSKLMGA 145 (338)
Q Consensus 127 ~~~h~~nVv~~L~~kL~~~ 145 (338)
--+.+|..|..|+..+
T Consensus 107 ---~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 107 ---SVQQMVEGLEGKIDEI 122 (126)
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 2345677777777655
No 47
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=61.21 E-value=66 Score=24.48 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHH
Q 019591 82 FDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGAT 146 (338)
Q Consensus 82 FdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s 146 (338)
.++-..+|..+...|+..|..+........ . .. .+....+...|.+..|..+|++++
T Consensus 47 l~~l~~~i~~~~~~~~~~lk~l~~~~~~~~--~-~~-----~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 47 LDELTDEIKQLFQKIKKRLKQLSKDNEDSE--G-EE-----PSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-TT-------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--c-cC-----CCcHHHHHHHHHHHHHHHHHHHHC
Confidence 444457899999999999999999877211 1 11 245677888999999999999874
No 48
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.18 E-value=1.8e+02 Score=29.05 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HhcccchHHHHH
Q 019591 248 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR-NALLRHLN----QISSNRWLMIKI 322 (338)
Q Consensus 248 ~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~-~eL~ka~~----~~~~~r~~~~~i 322 (338)
.++-...||.++.+.+..+.+ .|..+=-|-.-.|++++|.-...|..=. ..++++.+ .....|.++.++
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EE------K~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~ 343 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEE------KMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKL 343 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHH
Confidence 333334455555544333322 3455667777888888888888887655 34444433 122334555544
Q ss_pred HHHHH
Q 019591 323 FAVII 327 (338)
Q Consensus 323 ~~~l~ 327 (338)
+=+++
T Consensus 344 inllL 348 (395)
T PF10267_consen 344 INLLL 348 (395)
T ss_pred HHHHH
Confidence 43333
No 49
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.03 E-value=63 Score=30.61 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 271 THLATMVAQQGELAIRIDDNMDESLANVEGARNALL 306 (338)
Q Consensus 271 ~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ 306 (338)
..-..|..+|||.|++|+.|++........|.+.|.
T Consensus 96 ~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~ 131 (273)
T KOG3065|consen 96 SRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLT 131 (273)
T ss_pred HHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHH
Confidence 355667889999999999999999999999988875
No 50
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=60.24 E-value=11 Score=29.03 Aligned_cols=16 Identities=25% Similarity=0.712 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019591 321 KIFAVIIFFLTVFMFF 336 (338)
Q Consensus 321 ~i~~~l~i~~~~~vl~ 336 (338)
.|+++|+|++++.++|
T Consensus 29 tILivLVIIiLlImlf 44 (85)
T PF10717_consen 29 TILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 51
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=60.11 E-value=52 Score=22.42 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019591 258 NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 312 (338)
Q Consensus 258 ~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 312 (338)
+-...+..|.....+|..|..+=+.+|..=..-++....+++.+...+.++..+.
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888877778888888888888887776544
No 52
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=59.43 E-value=1.5e+02 Score=27.34 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=11.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 019591 313 SSNRWLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 313 ~~~r~~~~~i~~~l~i~~~~~vl 335 (338)
.+++...|+-+.++|++++.||.
T Consensus 210 ~ksk~s~wf~~~miI~v~~sFVs 232 (244)
T KOG2678|consen 210 DKSKLSYWFYITMIIFVILSFVS 232 (244)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444543
No 53
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=59.23 E-value=11 Score=30.13 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 019591 300 GARNALLRHLNQISSNRWLMIKIFAVIIFFLTVF 333 (338)
Q Consensus 300 ~g~~eL~ka~~~~~~~r~~~~~i~~~l~i~~~~~ 333 (338)
.|...|...+.+..+++|-=+.|++..+||+++.
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~ 65 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVL 65 (103)
T ss_pred eHHHHHhhhccccccchhhhHHHHHHHHHHHHHH
Confidence 4667888888888899986555554444444333
No 54
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=58.56 E-value=20 Score=24.83 Aligned_cols=17 Identities=12% Similarity=0.138 Sum_probs=11.0
Q ss_pred HHHHHHHhcccchHHHH
Q 019591 305 LLRHLNQISSNRWLMIK 321 (338)
Q Consensus 305 L~ka~~~~~~~r~~~~~ 321 (338)
.+.++++-++||.-++.
T Consensus 5 ~~~~~~~f~~nk~a~~g 21 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIG 21 (56)
T ss_pred HHHHHHHHHhCchHHHH
Confidence 45667777788865543
No 55
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=57.01 E-value=35 Score=34.09 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=11.6
Q ss_pred hcccchHHHHHHHHHHHHHHHHH
Q 019591 312 ISSNRWLMIKIFAVIIFFLTVFM 334 (338)
Q Consensus 312 ~~~~r~~~~~i~~~l~i~~~~~v 334 (338)
.-.-||+..+.++++.+++.+|.
T Consensus 181 ~E~yRw~~~~~lL~l~l~icl~~ 203 (406)
T PF04906_consen 181 YEYYRWLAYLGLLILDLVICLLG 203 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447876655554444444443
No 56
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.36 E-value=78 Score=23.26 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 254 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 302 (338)
Q Consensus 254 ~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~ 302 (338)
..|..+|..+.-.-....+|...|.+|...||++...+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777888888888999999999999988887777766543
No 57
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=54.95 E-value=76 Score=22.73 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 255 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 298 (338)
Q Consensus 255 ~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v 298 (338)
.++.++.-+..|-..|.....--..+++.++|+|..+|....++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 36778888889999999999999999999999999988765443
No 58
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=52.58 E-value=65 Score=24.91 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019591 47 SRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSM-FDDPIVEIQELTALIKDDITALNMALSDLQTLQN 115 (338)
Q Consensus 47 ~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~l-FdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~ 115 (338)
..++-...-.++..-+..++..|..+..++..+-- +..+=.+=-++...+|.|+..+.+.|..|+....
T Consensus 12 d~~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 12 DLDEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666678889999999999999998876421 2222255667888899999999999998887544
No 59
>PHA03240 envelope glycoprotein M; Provisional
Probab=51.75 E-value=13 Score=33.74 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=3.1
Q ss_pred hHHHHHH
Q 019591 317 WLMIKIF 323 (338)
Q Consensus 317 ~~~~~i~ 323 (338)
|+|++|+
T Consensus 215 WIiilII 221 (258)
T PHA03240 215 WIFIAII 221 (258)
T ss_pred HHHHHHH
Confidence 5544333
No 60
>PF14992 TMCO5: TMCO5 family
Probab=51.32 E-value=2.2e+02 Score=27.04 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 249 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301 (338)
Q Consensus 249 ~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g 301 (338)
...-..++.++++...+++++=.|=+.-+..=-+.+.+|++-.+....+.+-+
T Consensus 125 ~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~ 177 (280)
T PF14992_consen 125 CASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELS 177 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888888877778888888766666555433
No 61
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=51.30 E-value=1.2e+02 Score=23.97 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 255 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 296 (338)
Q Consensus 255 ~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~ 296 (338)
.|..+|..-..+-.=+.++-.=++.|..+.++.|.+++....
T Consensus 12 Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 12 RIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHH
Confidence 344444444444333444444567888888999988888444
No 62
>PHA02844 putative transmembrane protein; Provisional
Probab=51.16 E-value=21 Score=26.87 Aligned_cols=9 Identities=0% Similarity=-0.208 Sum_probs=4.0
Q ss_pred cchHHHHHH
Q 019591 315 NRWLMIKIF 323 (338)
Q Consensus 315 ~r~~~~~i~ 323 (338)
..|.+++|+
T Consensus 46 ~~~~~~ii~ 54 (75)
T PHA02844 46 SSTKIWILT 54 (75)
T ss_pred hhHHHHHHH
Confidence 445444333
No 63
>PHA03164 hypothetical protein; Provisional
Probab=50.44 E-value=23 Score=26.78 Aligned_cols=21 Identities=19% Similarity=0.689 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 019591 317 WLMIKIFAVIIFFLTVFMFFV 337 (338)
Q Consensus 317 ~~~~~i~~~l~i~~~~~vl~~ 337 (338)
.+++--++|-+|++++||+++
T Consensus 60 FlvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 344444555556666666653
No 64
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=48.77 E-value=23 Score=24.17 Aligned_cols=17 Identities=12% Similarity=0.544 Sum_probs=10.7
Q ss_pred cccchHHHHHHHHHHHH
Q 019591 313 SSNRWLMIKIFAVIIFF 329 (338)
Q Consensus 313 ~~~r~~~~~i~~~l~i~ 329 (338)
++-||.+++++++..+|
T Consensus 2 kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 2 KKFRWVVLVVVVLACLL 18 (47)
T ss_pred ceeeehHHHHHHHHHHH
Confidence 45689887665555444
No 65
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=47.01 E-value=1.3e+02 Score=23.17 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhcccchHHHHH
Q 019591 258 NVESTITELGGIFTHLATMVAQQG-ELAIRIDDNMDESLANVEGARNALLR--------HLNQISSNRWLMIKI 322 (338)
Q Consensus 258 ~ie~~i~eL~~if~~la~mV~~Qg-e~idrId~nv~~a~~~v~~g~~eL~k--------a~~~~~~~r~~~~~i 322 (338)
+|+.-+.++..+...++....+.. +.-+++...++.+...+......+.. +..+++.+.|.-+.|
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgi 79 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGI 79 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 344444555555555554444332 33456666666666655555444432 245788888876543
No 66
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.58 E-value=61 Score=29.20 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 019591 253 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 317 (338)
Q Consensus 253 ~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~ 317 (338)
.+.+.++...+.|+-.++-+==.-|.+-||-|+-+= +.+.|+..-....++.-++-+++.|
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLV----dKTenl~~~s~~fr~q~r~~~r~mw 184 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLV----DKTENLRSKSFDFRTQGRKLRRKMW 184 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeee----chhhhhhhhhHHHHHHHHHHHHHHH
Confidence 345666666777776665554445555555443322 2333444444445454444444444
No 67
>PRK14762 membrane protein; Provisional
Probab=46.42 E-value=35 Score=20.19 Aligned_cols=8 Identities=38% Similarity=1.045 Sum_probs=3.9
Q ss_pred hHHHHHHH
Q 019591 317 WLMIKIFA 324 (338)
Q Consensus 317 ~~~~~i~~ 324 (338)
|.+.+||+
T Consensus 6 w~i~iifl 13 (27)
T PRK14762 6 WAVLIIFL 13 (27)
T ss_pred HHHHHHHH
Confidence 54554444
No 68
>PHA02975 hypothetical protein; Provisional
Probab=46.09 E-value=29 Score=25.69 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=4.7
Q ss_pred cccchHHHHHH
Q 019591 313 SSNRWLMIKIF 323 (338)
Q Consensus 313 ~~~r~~~~~i~ 323 (338)
++..|.+++|+
T Consensus 40 ~~~~~~~~ii~ 50 (69)
T PHA02975 40 KSSLSIILIIF 50 (69)
T ss_pred CCchHHHHHHH
Confidence 34445444333
No 69
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=45.94 E-value=1.3e+02 Score=22.72 Aligned_cols=54 Identities=33% Similarity=0.349 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------hcCCCCCCH-------HHHHHHHHHHHHHHHHHHH
Q 019591 52 NKKASRIGLGIHEASQKIARLAKLAK---------RSSMFDDPI-------VEIQELTALIKDDITALNM 105 (338)
Q Consensus 52 ~~~a~~I~~~i~~~~~kl~~L~~L~k---------r~~lFdD~~-------~eI~~Lt~~Ik~~i~~l~~ 105 (338)
++....|-++|..++..++=|-++|+ +|+-.|=++ .+|.+=+...|..|..||+
T Consensus 2 FEkid~I~k~IE~~~~eIe~LL~~AkiSl~DyImiKRGS~DmPe~l~~~~~~QideeV~~LKe~IdaLNK 71 (79)
T PF10398_consen 2 FEKIDLILKNIENAQEEIEILLKIAKISLVDYIMIKRGSQDMPEHLNMAFLAQIDEEVEKLKEHIDALNK 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHTTSS---TTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhcccCCcCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999988888888776 455544443 4566555555555555554
No 70
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.74 E-value=1.3e+02 Score=27.77 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccC
Q 019591 143 MGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRR 222 (338)
Q Consensus 143 ~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 222 (338)
.|+|..|.++ +.|+++++..++|...+......
T Consensus 128 ~DvT~~y~D~-~arl~~l~~~~~rl~~ll~ka~~---------------------------------------------- 160 (262)
T PF14257_consen 128 EDVTEQYVDL-EARLKNLEAEEERLLELLEKAKT---------------------------------------------- 160 (262)
T ss_pred cchHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC----------------------------------------------
Q ss_pred CcCCCCCchhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Q 019591 223 PAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDN--------MDES 294 (338)
Q Consensus 223 ~~~d~~~~~~~~~~~Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~n--------v~~a 294 (338)
.+++-.||+.+.++.. ++-.+-.++..+-+++++- ....
T Consensus 161 ------------------------------~~d~l~ie~~L~~v~~---eIe~~~~~~~~l~~~v~~sti~i~l~~~~~~ 207 (262)
T PF14257_consen 161 ------------------------------VEDLLEIERELSRVRS---EIEQLEGQLKYLDDRVDYSTITISLYEPESI 207 (262)
T ss_pred ------------------------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhceEEEEEEEEecCCC
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhC
Q 019591 295 LANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 338 (338)
Q Consensus 295 ~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~l~i~~~~~vl~~~ 338 (338)
.......-..+..++..--..-.-.+..+++++++++-|++|++
T Consensus 208 ~~~~~~~~~~~~~al~~~~~~~~~~~~~lv~~l~~l~p~~~~~~ 251 (262)
T PF14257_consen 208 KPESPSFGSRFRDALKNGWNALVSFLSGLVVFLVGLLPWLPLIL 251 (262)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 71
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=45.63 E-value=2.1e+02 Score=28.88 Aligned_cols=10 Identities=40% Similarity=0.684 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 019591 262 TITELGGIFT 271 (338)
Q Consensus 262 ~i~eL~~if~ 271 (338)
.+.+|+++|.
T Consensus 146 ~L~~L~~il~ 155 (418)
T cd07912 146 QLTNLEDIFD 155 (418)
T ss_pred hHhHHHHHhC
Confidence 3344444443
No 72
>PHA02675 ORF104 fusion protein; Provisional
Probab=45.13 E-value=1.3e+02 Score=23.24 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 259 VESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 298 (338)
Q Consensus 259 ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v 298 (338)
||.-+..|-.+|..+...-..=++.|+|+|.+++....++
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445557888888888899999999999988755443
No 73
>PHA03054 IMV membrane protein; Provisional
Probab=44.96 E-value=30 Score=25.75 Aligned_cols=7 Identities=14% Similarity=0.549 Sum_probs=3.0
Q ss_pred ccchHHH
Q 019591 314 SNRWLMI 320 (338)
Q Consensus 314 ~~r~~~~ 320 (338)
+..|.++
T Consensus 45 ~~~~~~~ 51 (72)
T PHA03054 45 CWGWYWL 51 (72)
T ss_pred CchHHHH
Confidence 3345444
No 74
>PHA02819 hypothetical protein; Provisional
Probab=44.92 E-value=30 Score=25.75 Aligned_cols=9 Identities=22% Similarity=-0.005 Sum_probs=3.7
Q ss_pred ccchHHHHH
Q 019591 314 SNRWLMIKI 322 (338)
Q Consensus 314 ~~r~~~~~i 322 (338)
+..|.+++|
T Consensus 43 ~~~~~~~ii 51 (71)
T PHA02819 43 SFLRYYLII 51 (71)
T ss_pred ChhHHHHHH
Confidence 334544433
No 75
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=43.88 E-value=30 Score=21.07 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=16.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 019591 314 SNRWLMIKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 314 ~~r~~~~~i~~~l~i~~~~~vl~ 336 (338)
+.|-+++-+-+++|..+++|+++
T Consensus 4 strel~lnftvvlitvilmwllv 26 (31)
T PF05366_consen 4 STRELFLNFTVVLITVILMWLLV 26 (31)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHhhhHHHHHHHHHHHHH
Confidence 45666776677788888888764
No 76
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=43.50 E-value=1.1e+02 Score=21.43 Aligned_cols=56 Identities=18% Similarity=0.429 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019591 49 SEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQ 114 (338)
Q Consensus 49 seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~ 114 (338)
-.|...+...+..+.+|..-+ .| +++....+......+...+..++++|+.|+...
T Consensus 4 L~~I~~~r~lGfsL~eI~~~l-~l---------~~~~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~ 59 (65)
T PF09278_consen 4 LQFIRRLRELGFSLEEIRELL-EL---------YDQGDPPCADRRALLEEKLEEIEEQIAELQALR 59 (65)
T ss_dssp HHHHHHHHHTT--HHHHHHHH-HH---------CCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-hc---------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888899999999777555 22 344445666666888889999999999887644
No 77
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=43.25 E-value=12 Score=20.37 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 019591 317 WLMIKIFA 324 (338)
Q Consensus 317 ~~~~~i~~ 324 (338)
+.|+.|++
T Consensus 4 ~vIIlvvL 11 (19)
T PF13956_consen 4 LVIILVVL 11 (19)
T ss_pred ehHHHHHH
Confidence 33433333
No 78
>PHA02692 hypothetical protein; Provisional
Probab=40.63 E-value=39 Score=25.16 Aligned_cols=7 Identities=14% Similarity=0.605 Sum_probs=2.9
Q ss_pred ccchHHH
Q 019591 314 SNRWLMI 320 (338)
Q Consensus 314 ~~r~~~~ 320 (338)
+..|..+
T Consensus 42 ~~~~~~~ 48 (70)
T PHA02692 42 GVPWTTV 48 (70)
T ss_pred CcchHHH
Confidence 3345443
No 79
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.54 E-value=1.1e+02 Score=25.44 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDN 290 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~n 290 (338)
+..+.-.+++..+...+..++.-+..+..+|..=+.-|++|++|
T Consensus 82 ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 82 EISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445566777777777777777777777777777777887765
No 80
>PRK14710 hypothetical protein; Provisional
Probab=39.64 E-value=35 Score=25.46 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019591 317 WLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 317 ~~~~~i~~~l~i~~~~~vl 335 (338)
++++.||.++|+.++..+-
T Consensus 10 km~ififaiii~v~lcv~t 28 (86)
T PRK14710 10 KMIIFIFAIIIIVVLCVIT 28 (86)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5666777777666665543
No 81
>PRK00295 hypothetical protein; Provisional
Probab=36.40 E-value=1.7e+02 Score=21.45 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 256 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 256 i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
|..+|..+.-.-..-.+|...|.+|...||+....+......+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888889999999999988777766665554
No 82
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=36.16 E-value=30 Score=27.55 Aligned_cols=9 Identities=0% Similarity=0.460 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019591 326 IIFFLTVFM 334 (338)
Q Consensus 326 l~i~~~~~v 334 (338)
++||+++++
T Consensus 72 v~IlVily~ 80 (101)
T PF06024_consen 72 VCILVILYA 80 (101)
T ss_pred HHHHHHHhh
Confidence 333333333
No 83
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=36.06 E-value=1.6e+02 Score=28.17 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 254 VALHNVESTITEL----GGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301 (338)
Q Consensus 254 ~~i~~ie~~i~eL----~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g 301 (338)
+.|.+|..++..| +.||..+..-|.+-.+-|+.|..-++.++..|++=
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l 69 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKL 69 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 35677888888888888888888888888877743
No 84
>PF15102 TMEM154: TMEM154 protein family
Probab=34.62 E-value=17 Score=31.04 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 019591 317 WLMIKIFAVIIFFLTVFMFFV 337 (338)
Q Consensus 317 ~~~~~i~~~l~i~~~~~vl~~ 337 (338)
-+|++|=+||+++++++|++|
T Consensus 58 iLmIlIP~VLLvlLLl~vV~l 78 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCL 78 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHh
Confidence 344444445555555555554
No 85
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=33.99 E-value=30 Score=27.58 Aligned_cols=14 Identities=7% Similarity=0.501 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 019591 323 FAVIIFFLTVFMFF 336 (338)
Q Consensus 323 ~~~l~i~~~~~vl~ 336 (338)
+++++.|++++|++
T Consensus 65 li~lls~v~IlVil 78 (101)
T PF06024_consen 65 LISLLSFVCILVIL 78 (101)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 86
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=33.80 E-value=92 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 257 HNVESTITELGGIFTHLATMVAQQGEL 283 (338)
Q Consensus 257 ~~ie~~i~eL~~if~~la~mV~~Qge~ 283 (338)
..|-..+.+|++++.+|-..+.+|-.=
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE 30 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999988887543
No 87
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=33.23 E-value=2.4e+02 Score=22.08 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019591 259 VESTITELGGIFTHLATMVA-QQGELAIRIDDNMDESLANVEGARNALLRHLNQI 312 (338)
Q Consensus 259 ie~~i~eL~~if~~la~mV~-~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 312 (338)
.+..-.++..-|..|-..+. ...++++.|+..-......+..-...|.......
T Consensus 37 ~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 37 AADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566667777777776 4567888888887777777777666666655443
No 88
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.16 E-value=3.9e+02 Score=24.59 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQT 112 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~ 112 (338)
..+|.+...+|...+......=.-|..+.+-.....+.-....+--..|.+||..++.-|+....
T Consensus 10 ~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 10 TLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788777777776666666666655444444445555556788888888888876554
No 89
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=32.75 E-value=1.5e+02 Score=29.06 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 259 VESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 296 (338)
Q Consensus 259 ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~ 296 (338)
+...+.+...+|.++-.....-||.--++++-.+....
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~ 148 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLAR 148 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 33444444444444433333455555555554444443
No 90
>PHA02849 putative transmembrane protein; Provisional
Probab=32.62 E-value=59 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019591 318 LMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 318 ~~~~i~~~l~i~~~~~vl 335 (338)
+++.+|+++|+|+++.++
T Consensus 18 ~vi~v~v~vI~i~~flLl 35 (82)
T PHA02849 18 TVILVFVLVISFLAFMLL 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 91
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=32.09 E-value=4.5e+02 Score=24.95 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMAL 107 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I 107 (338)
.+||.+.-..-+.+|.+|+.-...|..|.+. ..||..++..|++-|..|++..
T Consensus 216 ksEWA~V~~AwkneLsEINSI~~gvEeLkKL-------AqEIss~Sn~lk~TIseLEKkF 268 (353)
T PF01540_consen 216 KSEWARVQEAWKNELSEINSIIKGVEELKKL-------AQEISSHSNKLKATISELEKKF 268 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 4778887778888888777654444444333 2688888888888888887644
No 92
>PF15106 TMEM156: TMEM156 protein family
Probab=32.02 E-value=44 Score=30.32 Aligned_cols=13 Identities=15% Similarity=0.636 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 019591 323 FAVIIFFLTVFMF 335 (338)
Q Consensus 323 ~~~l~i~~~~~vl 335 (338)
+++++||+++||+
T Consensus 182 VllVfiflii~iI 194 (226)
T PF15106_consen 182 VLLVFIFLIILII 194 (226)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 93
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=31.95 E-value=54 Score=24.60 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 019591 317 WLMIKIFAVIIFFL 330 (338)
Q Consensus 317 ~~~~~i~~~l~i~~ 330 (338)
|.-+.++++.++++
T Consensus 45 ~~~~~~~ii~ii~v 58 (72)
T PF12575_consen 45 NFNWIILIISIIFV 58 (72)
T ss_pred cchHHHHHHHHHHH
Confidence 43344444443333
No 94
>COG4640 Predicted membrane protein [Function unknown]
Probab=31.73 E-value=56 Score=32.50 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 019591 300 GARNALLRHLN 310 (338)
Q Consensus 300 ~g~~eL~ka~~ 310 (338)
+|+++|-+-.+
T Consensus 31 qan~~tn~i~~ 41 (465)
T COG4640 31 QANKSTNEIIQ 41 (465)
T ss_pred hhhHHHHHHHH
Confidence 44445544333
No 95
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=31.52 E-value=53 Score=25.37 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019591 319 MIKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 319 ~~~i~~~l~i~~~~~vl~ 336 (338)
.+.++++-++|+++++|+
T Consensus 12 ~L~vlGmg~VflfL~iLi 29 (84)
T COG3630 12 TLMVLGMGFVFLFLSILI 29 (84)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666666654
No 96
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.34 E-value=4.4e+02 Score=27.70 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=16.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH
Q 019591 126 DRVVHSTTVCDDLKSKLMGATKELQD 151 (338)
Q Consensus 126 ~~~~h~~nVv~~L~~kL~~~s~~Fr~ 151 (338)
++-....-++.+|++-+-.+.+.|++
T Consensus 662 ~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 662 KELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677777777777777776
No 97
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=31.31 E-value=70 Score=22.94 Aligned_cols=14 Identities=29% Similarity=0.683 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 019591 323 FAVIIFFLTVFMFF 336 (338)
Q Consensus 323 ~~~l~i~~~~~vl~ 336 (338)
++++++|++.|-+|
T Consensus 13 i~l~vl~~~~Ftl~ 26 (58)
T PF13314_consen 13 IILIVLFGASFTLF 26 (58)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 98
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.10 E-value=2.2e+02 Score=21.12 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 254 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 254 ~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
..|..+|..+.-.-..-.+|...|.+|...|++....+..-...+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777778888888998888888776666555443
No 99
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=31.09 E-value=51 Score=25.23 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 019591 321 KIFAVIIFFLTVFMF 335 (338)
Q Consensus 321 ~i~~~l~i~~~~~vl 335 (338)
.++++.++|+++.+|
T Consensus 11 ~v~GM~~VF~fL~lL 25 (82)
T TIGR01195 11 TVLGMGIVFLFLSLL 25 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 100
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=30.51 E-value=2.6e+02 Score=21.80 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019591 88 EIQELTALIKDDITALNMALSDLQTLQNL 116 (338)
Q Consensus 88 eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~ 116 (338)
+.-.+...|+..|..++..+..|+.....
T Consensus 5 ~F~~~v~~I~~~I~~i~~~v~~l~~l~~~ 33 (117)
T smart00503 5 EFFEKVEEIRANIQKISQNVAELQKLHEE 33 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888877776553
No 101
>PRK04325 hypothetical protein; Provisional
Probab=30.40 E-value=2.3e+02 Score=21.13 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 256 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 256 i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
|..+|.-+.-.-..-.+|...|.+|...|++....+......+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777778888899999998888777666555544
No 102
>PHA02650 hypothetical protein; Provisional
Probab=30.40 E-value=68 Score=24.46 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=10.1
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 019591 315 NRWLMIKIFAVIIFFLTVFM 334 (338)
Q Consensus 315 ~r~~~~~i~~~l~i~~~~~v 334 (338)
+.|.-..+++++++++++.+
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~ 63 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVA 63 (81)
T ss_pred cCCchHHHHHHHHHHHHHHH
Confidence 34666666655544443333
No 103
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=30.20 E-value=3.1e+02 Score=22.57 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019591 134 VCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFS 171 (338)
Q Consensus 134 Vv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~ 171 (338)
....-+.....++.+|++++..|...-...+++.+...
T Consensus 82 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i 119 (151)
T cd00179 82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERI 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999999999887766666665443
No 104
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=30.09 E-value=2.3e+02 Score=20.89 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHhcccchHHHHHHHHHHHHHHHHHH
Q 019591 287 IDDNMDESLANVEGARNALLRHL-----NQISSNRWLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 287 Id~nv~~a~~~v~~g~~eL~ka~-----~~~~~~r~~~~~i~~~l~i~~~~~vl 335 (338)
+++-.+....++++...=|..|. ++.+..+-.-+.|+++-+|=++++++
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI~li 57 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFIIYLI 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777663 34444444445555555555555554
No 105
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.99 E-value=1.6e+02 Score=29.32 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 269 IFTHLATMVAQQGELAIRIDDNMDESLAN 297 (338)
Q Consensus 269 if~~la~mV~~Qge~idrId~nv~~a~~~ 297 (338)
+|-++-.....-||.-=+++.=.++...+
T Consensus 120 ~F~~~~~~~v~~gE~~G~L~~~l~~la~y 148 (397)
T COG1459 120 VFPDLYVAMVAAGERSGNLDEVLQRLAKY 148 (397)
T ss_pred cCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33333333334444444444433333333
No 106
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=29.66 E-value=6e+02 Score=27.62 Aligned_cols=26 Identities=8% Similarity=-0.119 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHH
Q 019591 298 VEGARNALLRHLNQISSNRWLMIKIF 323 (338)
Q Consensus 298 v~~g~~eL~ka~~~~~~~r~~~~~i~ 323 (338)
...+......++......-++++.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (914)
T PRK11466 315 NQHGLAHLEKASARGQYSLLLLGMVS 340 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 107
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=29.30 E-value=5.7e+02 Score=27.96 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 86 IVEIQELTALIKDDITALNMALSDL 110 (338)
Q Consensus 86 ~~eI~~Lt~~Ik~~i~~l~~~I~~L 110 (338)
+.+.+.....+++....++..+..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~l 96 (968)
T TIGR02956 72 ERQRQAIGKKLTLQSETLLHSLKAL 96 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 108
>PHA02844 putative transmembrane protein; Provisional
Probab=28.96 E-value=71 Score=24.09 Aligned_cols=19 Identities=26% Similarity=0.383 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019591 317 WLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 317 ~~~~~i~~~l~i~~~~~vl 335 (338)
+.-..+++++++++++.++
T Consensus 45 ~~~~~~~ii~i~~v~~~~~ 63 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATF 63 (75)
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 4555555555444443333
No 109
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=28.93 E-value=2.5e+02 Score=20.96 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 019591 284 AIRIDDNMDES 294 (338)
Q Consensus 284 idrId~nv~~a 294 (338)
+|.||+.||.+
T Consensus 21 Ld~iEeKvEf~ 31 (70)
T PF04210_consen 21 LDEIEEKVEFT 31 (70)
T ss_pred HHHHHHHHHhH
Confidence 44555544444
No 110
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=28.92 E-value=3.3e+02 Score=22.44 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 133 TVCDDLKSKLMGATKELQDVLTTRTEN 159 (338)
Q Consensus 133 nVv~~L~~kL~~~s~~Fr~~l~~r~~~ 159 (338)
.++..++..+..+...|+.+...-.+-
T Consensus 72 ~~l~~v~~~v~~L~~s~~RL~~eV~~P 98 (132)
T PF10392_consen 72 SVLQAVRSSVESLQSSYERLRSEVIEP 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 366666666666666666665544433
No 111
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=28.85 E-value=48 Score=23.11 Aligned_cols=17 Identities=29% Similarity=0.768 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019591 319 MIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 319 ~~~i~~~l~i~~~~~vl 335 (338)
+++++-++|+|+.+|++
T Consensus 4 ilKFvY~mIiflslflv 20 (54)
T PF07127_consen 4 ILKFVYAMIIFLSLFLV 20 (54)
T ss_pred chhhHHHHHHHHHHHHh
Confidence 45555566666666665
No 112
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=28.79 E-value=60 Score=25.05 Aligned_cols=17 Identities=18% Similarity=0.632 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019591 317 WLMIKIFAVIIFFLTVF 333 (338)
Q Consensus 317 ~~~~~i~~~l~i~~~~~ 333 (338)
..||++++|+|.++++|
T Consensus 28 MtILivLVIIiLlImlf 44 (85)
T PF10717_consen 28 MTILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666777666666666
No 113
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=28.63 E-value=2e+02 Score=19.72 Aligned_cols=53 Identities=6% Similarity=0.103 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 246 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 298 (338)
Q Consensus 246 ~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v 298 (338)
+..+..=...+..+..-..+++.+..+=..++..=..-+|.++.++..+..++
T Consensus 11 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l 63 (66)
T smart00397 11 DEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRL 63 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444555555555544443
No 114
>PRK00736 hypothetical protein; Provisional
Probab=28.20 E-value=2.4e+02 Score=20.65 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 256 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 256 i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
|..+|..+...-..-.+|...|..|...||++..-+..-...+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777788888998888888777666555543
No 115
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=27.52 E-value=9.8e+02 Score=27.41 Aligned_cols=109 Identities=19% Similarity=0.182 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---------cCCCCCC----------------------HHHHHHHHH-------HH
Q 019591 55 ASRIGLGIHEASQKIARLAKLAKR---------SSMFDDP----------------------IVEIQELTA-------LI 96 (338)
Q Consensus 55 a~~I~~~i~~~~~kl~~L~~L~kr---------~~lFdD~----------------------~~eI~~Lt~-------~I 96 (338)
...|.+.|.......++|.-|... +..|.|- ..+|+.|.. .|
T Consensus 1123 l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdv 1202 (1439)
T PF12252_consen 1123 LDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDV 1202 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhH
Confidence 356777777777777777777642 2235553 135666665 67
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 97 KDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHES 165 (338)
Q Consensus 97 k~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~ 165 (338)
|..+..++..+..+....+..... .+.....+-.+=++.|+.+||.+....-..+-..++..-.+.+
T Consensus 1203 K~missf~d~laeiE~LrnErIKk--HGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme 1269 (1439)
T PF12252_consen 1203 KSMISSFNDRLAEIEFLRNERIKK--HGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQME 1269 (1439)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhc--cCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788888887777776654433321 1112223333668889999998888777766555554444443
No 116
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=27.45 E-value=2.7e+02 Score=22.17 Aligned_cols=9 Identities=33% Similarity=0.634 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 019591 269 IFTHLATMV 277 (338)
Q Consensus 269 if~~la~mV 277 (338)
+..++.++|
T Consensus 8 l~~~~~~lv 16 (121)
T PF07332_consen 8 LVDDLSTLV 16 (121)
T ss_pred HHHHHHHHH
Confidence 333444444
No 117
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=27.26 E-value=3.3e+02 Score=26.69 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 246 ENYSQSRAVALHNVESTITELGG------IFTHLATMVAQQGELAIRIDDNMDESLANVE 299 (338)
Q Consensus 246 ~~~~~~R~~~i~~ie~~i~eL~~------if~~la~mV~~Qge~idrId~nv~~a~~~v~ 299 (338)
+.+++++.+.+.+--..-..|++ +|-++.......||.-.++|.-.+......+
T Consensus 296 n~~l~~~l~~i~~~l~~G~sls~al~~~~~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~ 355 (399)
T TIGR02120 296 NRALRAAVEDAAARVREGGSLSRALRATGLFPPLLVHMIASGEKSGQLETMLERAADNQE 355 (399)
T ss_pred CHHHHHHHHHHHHHHHCCccHHHHHhcCCCCCHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 44555555554432222222444 4444555555667777777766665555444
No 118
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=27.03 E-value=1.1e+02 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcccchHHHHHHHHH
Q 019591 290 NMDESLANVEGARNALLRHLN-QISSNRWLMIKIFAVI 326 (338)
Q Consensus 290 nv~~a~~~v~~g~~eL~ka~~-~~~~~r~~~~~i~~~l 326 (338)
.|+.=...++.|+++|.+-.+ ..+.+||+.++..++.
T Consensus 98 ~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~ 135 (250)
T COG2966 98 AVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLA 135 (250)
T ss_pred HHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHH
Confidence 344455667788888877664 5566678766444433
No 119
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=26.92 E-value=1e+02 Score=31.77 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019591 130 HSTTVCDDLKSKLMGATKELQD 151 (338)
Q Consensus 130 h~~nVv~~L~~kL~~~s~~Fr~ 151 (338)
+...+...|...|-+++.-|..
T Consensus 175 ~~~~lgi~L~~YltElttvFg~ 196 (490)
T PF00523_consen 175 ADNQLGISLNQYLTELTTVFGP 196 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3344555666677777777765
No 120
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=26.83 E-value=76 Score=27.06 Aligned_cols=10 Identities=0% Similarity=0.222 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 019591 326 IIFFLTVFMF 335 (338)
Q Consensus 326 l~i~~~~~vl 335 (338)
|+|+++||++
T Consensus 130 l~i~~giy~~ 139 (145)
T PF10661_consen 130 LAICGGIYVV 139 (145)
T ss_pred HHHHHHHHHH
Confidence 4444555544
No 121
>COG4499 Predicted membrane protein [Function unknown]
Probab=26.32 E-value=80 Score=31.39 Aligned_cols=19 Identities=11% Similarity=0.483 Sum_probs=10.8
Q ss_pred HHHHHhcccchHHHHHHHH
Q 019591 307 RHLNQISSNRWLMIKIFAV 325 (338)
Q Consensus 307 ka~~~~~~~r~~~~~i~~~ 325 (338)
|-+.++.+.||-+.+.|++
T Consensus 207 kn~a~VpK~k~~ifk~~gi 225 (434)
T COG4499 207 KNYAFVPKKKYTIFKYFGI 225 (434)
T ss_pred cceeecccccceehhhHHH
Confidence 3344677777765544443
No 122
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=26.31 E-value=99 Score=22.30 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 019591 304 ALLRHLN 310 (338)
Q Consensus 304 eL~ka~~ 310 (338)
|+..+.+
T Consensus 31 eil~ker 37 (64)
T COG4068 31 EILNKER 37 (64)
T ss_pred HHHHHHH
Confidence 3333333
No 123
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=26.23 E-value=52 Score=19.90 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=10.5
Q ss_pred HhcccchHHHHHHHHH
Q 019591 311 QISSNRWLMIKIFAVI 326 (338)
Q Consensus 311 ~~~~~r~~~~~i~~~l 326 (338)
|+++++|+...+..+.
T Consensus 7 yKsGK~Wv~a~~~~~~ 22 (29)
T TIGR03715 7 YKSGKQWVFAAITTLA 22 (29)
T ss_pred EecccHHHHHHHHHHH
Confidence 6678889876555433
No 124
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.94 E-value=6.4e+02 Score=25.49 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 249 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 306 (338)
Q Consensus 249 ~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ 306 (338)
+.+-..+|...++.|.+..+-+..|..++.++.+-+..|+.-+-++...+..-.+.+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 4455678888888999999999999999999999999999888877777666655554
No 125
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=25.85 E-value=82 Score=24.19 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 019591 317 WLMIKIF 323 (338)
Q Consensus 317 ~~~~~i~ 323 (338)
.+|++++
T Consensus 36 lliivvV 42 (93)
T PF08999_consen 36 LLIIVVV 42 (93)
T ss_dssp HHHHHHH
T ss_pred EEEEEEe
Confidence 3343333
No 126
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=25.79 E-value=62 Score=35.89 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 49 SEFNKKASRIGLGIHEASQKIARLAK 74 (338)
Q Consensus 49 seF~~~a~~I~~~i~~~~~kl~~L~~ 74 (338)
+.+.+.+.-|...+.=+.-++=+|..
T Consensus 645 ~~~~d~~~yip~tlnPVfgkmfel~~ 670 (1105)
T KOG1326|consen 645 KRTLDRAHYIPNTLNPVFGKMFELEC 670 (1105)
T ss_pred chhhhhhhcCcCCCCcHHHHHHHhhc
Confidence 34445555555555555555545444
No 127
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=25.67 E-value=87 Score=23.41 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=5.2
Q ss_pred HHHHHHhcccc
Q 019591 306 LRHLNQISSNR 316 (338)
Q Consensus 306 ~ka~~~~~~~r 316 (338)
+|.+.++|+..
T Consensus 6 rk~Y~rrSr~~ 16 (72)
T PF13198_consen 6 RKEYPRRSRKT 16 (72)
T ss_pred HHHccchhHHH
Confidence 34454454444
No 128
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=25.65 E-value=98 Score=23.43 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019591 283 LAIRIDDNMDESLANVE 299 (338)
Q Consensus 283 ~idrId~nv~~a~~~v~ 299 (338)
.++.||.+.........
T Consensus 10 ~L~eiEr~L~~~DP~fa 26 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFA 26 (82)
T ss_pred HHHHHHHHHHhcCcHHH
Confidence 77778877765544443
No 129
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=25.52 E-value=1e+02 Score=21.49 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019591 320 IKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 320 ~~i~~~l~i~~~~~vl~ 336 (338)
+.+|.+.|||+++|+++
T Consensus 25 ~~~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 25 LWLFYGTIVFAVGYLVL 41 (51)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577778888877764
No 130
>PRK02119 hypothetical protein; Provisional
Probab=25.44 E-value=2.9e+02 Score=20.59 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 253 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 253 ~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
+..|..+|..+.-.-..-.+|...|.+|...||+....+......+..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777777777788888999999998888777666555543
No 131
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=25.26 E-value=4.7e+02 Score=23.00 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019591 87 VEIQELTALIKDDITALNMALSDLQTLQN 115 (338)
Q Consensus 87 ~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~ 115 (338)
..++.-..+++.+|..+++.|+.|+....
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~ 144 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQS 144 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888999999999988887554
No 132
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=25.14 E-value=4.9e+02 Score=26.29 Aligned_cols=7 Identities=0% Similarity=-0.187 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 019591 317 WLMIKIF 323 (338)
Q Consensus 317 ~~~~~i~ 323 (338)
|+++.++
T Consensus 152 ~~~~~~~ 158 (565)
T PRK10935 152 AISLLGL 158 (565)
T ss_pred HHHHHHH
Confidence 4443333
No 133
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=24.96 E-value=2.5e+02 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 267 GGIFTHLATMVAQQGELAIRIDDNMDESLANVE 299 (338)
Q Consensus 267 ~~if~~la~mV~~Qge~idrId~nv~~a~~~v~ 299 (338)
..+|-++-.-+..-||.--++++..+....+.+
T Consensus 121 ~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~ 153 (399)
T TIGR02120 121 PRDFPPLYRALVAAGEASGALDAVLERLADYLE 153 (399)
T ss_pred cccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 334555444444455555555555555544444
No 134
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.95 E-value=82 Score=28.66 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 019591 328 FFLTVFM 334 (338)
Q Consensus 328 i~~~~~v 334 (338)
|..++|+
T Consensus 143 ICT~LfL 149 (227)
T PF05399_consen 143 ICTLLFL 149 (227)
T ss_pred HHHHHHH
Confidence 3333333
No 135
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.63 E-value=6.5e+02 Score=24.36 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019591 265 ELGGIFTHLATMVAQQGELAIRI---DDNMDESLANVEGARNALLRH 308 (338)
Q Consensus 265 eL~~if~~la~mV~~Qge~idrI---d~nv~~a~~~v~~g~~eL~ka 308 (338)
++-+|=+.|-.++.-|..+-..+ |.||+-...++..+...+.+.
T Consensus 233 evrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~g 279 (316)
T KOG3894|consen 233 EVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDG 279 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 33444444444444444443332 444555555555555555443
No 136
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=24.44 E-value=7.3e+02 Score=24.91 Aligned_cols=84 Identities=12% Similarity=0.030 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-h
Q 019591 246 ENYSQSRAVALHNVESTITELGGIFTHLA-------TMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR-W 317 (338)
Q Consensus 246 ~~~~~~R~~~i~~ie~~i~eL~~if~~la-------~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r-~ 317 (338)
+..+..|..+.+.....|..+..+-...+ .-|.++.+.+.+ .|.+..+.+.-..+|.+||+....-| .
T Consensus 216 ~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~yyQ~y~~lr~q 291 (499)
T COG4372 216 TEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAYYQAYVRLRQQ 291 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555544444444 445555565655 66788899999999999988433333 2
Q ss_pred HHHHHHHHHHHHHHHH
Q 019591 318 LMIKIFAVIIFFLTVF 333 (338)
Q Consensus 318 ~~~~i~~~l~i~~~~~ 333 (338)
-+-...+=++.|+.+=
T Consensus 292 ~~a~~rGQvla~a~~r 307 (499)
T COG4372 292 AAATQRGQVLAGAAQR 307 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344455555443
No 137
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=24.36 E-value=2.9e+02 Score=27.97 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 299 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~ 299 (338)
.+-..++.+.+.+++.-..++.|..+.-.|+..|...|-+.|.++......|.
T Consensus 48 aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 48 ALEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 44467888999999999999999999999999999999999999988877765
No 138
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=24.26 E-value=1.4e+02 Score=21.63 Aligned_cols=6 Identities=33% Similarity=0.146 Sum_probs=2.4
Q ss_pred HHHHHH
Q 019591 301 ARNALL 306 (338)
Q Consensus 301 g~~eL~ 306 (338)
|..-|.
T Consensus 11 A~~FL~ 16 (60)
T PF06072_consen 11 ATEFLR 16 (60)
T ss_pred HHHHHH
Confidence 334443
No 139
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=24.16 E-value=4.7e+02 Score=24.17 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 019591 321 KIFAVIIFFLTVFMF 335 (338)
Q Consensus 321 ~i~~~l~i~~~~~vl 335 (338)
++++.+||+.|.||-
T Consensus 204 l~iG~iIi~tLtYvG 218 (232)
T PF09577_consen 204 LSIGGIIIATLTYVG 218 (232)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667777877774
No 140
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.84 E-value=2.4e+02 Score=25.47 Aligned_cols=11 Identities=0% Similarity=0.042 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019591 147 KELQDVLTTRT 157 (338)
Q Consensus 147 ~~Fr~~l~~r~ 157 (338)
..|-.+-...+
T Consensus 23 gNf~sva~qiL 33 (217)
T KOG0859|consen 23 GNFSSIAAQIL 33 (217)
T ss_pred CCHHHHHHHHH
Confidence 33333333333
No 141
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=23.64 E-value=3.9e+02 Score=21.47 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 255 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 296 (338)
Q Consensus 255 ~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~ 296 (338)
.|..+...+.-.++=.+.|..=+..||++++.|..-+.....
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ink 95 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINK 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555666666666655444433
No 142
>PHA02690 hypothetical protein; Provisional
Probab=23.38 E-value=2.8e+02 Score=21.27 Aligned_cols=13 Identities=15% Similarity=0.718 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 019591 324 AVIIFFLTVFMFF 336 (338)
Q Consensus 324 ~~l~i~~~~~vl~ 336 (338)
+++.+|.+.+|||
T Consensus 48 L~lTvfV~myiv~ 60 (90)
T PHA02690 48 LLLTVFVVMYIVF 60 (90)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 143
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=23.33 E-value=86 Score=24.28 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019591 323 FAVIIFF 329 (338)
Q Consensus 323 ~~~l~i~ 329 (338)
+++.++|
T Consensus 17 ~GM~~VF 23 (85)
T PRK03814 17 TGMGVVF 23 (85)
T ss_pred HHHHHHH
Confidence 3333333
No 144
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=23.29 E-value=1.4e+02 Score=19.21 Aligned_cols=7 Identities=57% Similarity=0.975 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 019591 318 LMIKIFA 324 (338)
Q Consensus 318 ~~~~i~~ 324 (338)
+.+++++
T Consensus 2 ~~LK~~V 8 (36)
T PF02532_consen 2 LTLKIFV 8 (36)
T ss_dssp HHHHHHH
T ss_pred eEEEEee
Confidence 3444443
No 145
>PHA03054 IMV membrane protein; Provisional
Probab=22.96 E-value=1.1e+02 Score=22.86 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=11.1
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 019591 315 NRWLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 315 ~r~~~~~i~~~l~i~~~~~vl 335 (338)
+++.-..+++++++++++.++
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l 63 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLL 63 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 446666666655444444333
No 146
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=22.92 E-value=98 Score=30.65 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=16.2
Q ss_pred HHhcccchHHHHHHHHHHHHHHHHHHH
Q 019591 310 NQISSNRWLMIKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 310 ~~~~~~r~~~~~i~~~l~i~~~~~vl~ 336 (338)
.-..++||+|+.+.++++++.++|.++
T Consensus 34 ~~L~r~k~~Il~~~~~~~~~g~~ya~~ 60 (377)
T PRK10381 34 SVLWKAKKTIIAITFAFACAGLLISFI 60 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333455677776666666666666543
No 147
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=22.87 E-value=69 Score=32.91 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019591 57 RIGLGIHEASQKIARLAK 74 (338)
Q Consensus 57 ~I~~~i~~~~~kl~~L~~ 74 (338)
.+.+.|..+++-+.+|..
T Consensus 126 ~lk~si~~tN~AV~~l~~ 143 (490)
T PF00523_consen 126 RLKESIQSTNEAVQELTN 143 (490)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccccceecch
Confidence 344455555555555544
No 148
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=22.78 E-value=4.8e+02 Score=22.63 Aligned_cols=11 Identities=18% Similarity=-0.118 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 019591 265 ELGGIFTHLAT 275 (338)
Q Consensus 265 eL~~if~~la~ 275 (338)
.|.++...|+.
T Consensus 110 iL~~lg~~LG~ 120 (171)
T PRK08307 110 ILLQFGKTLGQ 120 (171)
T ss_pred HHHHHHHHHCc
Confidence 34445555555
No 149
>PHA02657 hypothetical protein; Provisional
Probab=22.68 E-value=1.1e+02 Score=23.76 Aligned_cols=17 Identities=18% Similarity=0.608 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019591 320 IKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 320 ~~i~~~l~i~~~~~vl~ 336 (338)
+.+|++.|+|+++.+++
T Consensus 30 itvfv~vI~il~flLLY 46 (95)
T PHA02657 30 FTIFIFVVCILIYLLIY 46 (95)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 150
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=22.60 E-value=4.2e+02 Score=27.17 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Q 019591 259 VESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFV 337 (338)
Q Consensus 259 ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~~l~i~~~~~vl~~ 337 (338)
+.....++...|..-..-..+.......+...+..-...++.....+..........-+.+..+++++++++++++.++
T Consensus 66 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (569)
T PRK10600 66 QLAQLQALQDYWRNELKPALQQAQNPEDVAADVAQFVAGLDALVSAFDHTTEMRIETVVLVHRVFAVFMALLLVFTIIW 144 (569)
T ss_pred HHHHHHHHHHHHHHhhhHHhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 151
>PHA02819 hypothetical protein; Provisional
Probab=22.53 E-value=1.2e+02 Score=22.71 Aligned_cols=21 Identities=0% Similarity=0.110 Sum_probs=10.6
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 019591 315 NRWLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 315 ~r~~~~~i~~~l~i~~~~~vl 335 (338)
+++.-..+++++++++++.++
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~ 61 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVII 61 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHH
Confidence 335566666655444444433
No 152
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.37 E-value=6.2e+02 Score=23.29 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hhhcCCC----------------------chhh
Q 019591 80 SMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNL----------EIVEGNY----------------------SQDR 127 (338)
Q Consensus 80 ~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~----------~~~~g~~----------------------~~~~ 127 (338)
..|.|+-.++..+.+.||.-|++=+.-...+++.... -...++. ....
T Consensus 101 ~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~ 180 (230)
T cd07625 101 ATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKL 180 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999998877666555544432210 0010110 1223
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 128 VVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAH 163 (338)
Q Consensus 128 ~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~ 163 (338)
.+.+.|+..-+..=....+.+|+.++..|+...-..
T Consensus 181 ~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~ 216 (230)
T cd07625 181 KRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEY 216 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556677777777777777665443
No 153
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.32 E-value=6.8e+02 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 86 IVEIQELTALIKDDITALNMALSDLQT 112 (338)
Q Consensus 86 ~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~ 112 (338)
..|+..+-..+...|.+-.+.+..|..
T Consensus 27 leel~~lQ~~C~ssI~~QkkrLk~L~~ 53 (330)
T PF07851_consen 27 LEELSKLQDKCSSSISHQKKRLKELKK 53 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444
No 154
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.28 E-value=6e+02 Score=23.10 Aligned_cols=9 Identities=22% Similarity=0.542 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 019591 317 WLMIKIFAV 325 (338)
Q Consensus 317 ~~~~~i~~~ 325 (338)
|--+.+.++
T Consensus 153 wgT~~lmgv 161 (207)
T PF05546_consen 153 WGTWGLMGV 161 (207)
T ss_pred HHHHHHHHH
Confidence 444434444
No 155
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=22.28 E-value=4.9e+02 Score=22.52 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 264 TELGGIFTHLATMVAQQGELAIRIDDNMDE 293 (338)
Q Consensus 264 ~eL~~if~~la~mV~~Qge~idrId~nv~~ 293 (338)
..|.++...|+.+ |-..++..|+-..++
T Consensus 108 eiL~~lG~~LG~~--D~e~Q~k~i~L~~~~ 135 (170)
T TIGR02833 108 EILLQFGKTLGES--DREGQQKHINLTLEH 135 (170)
T ss_pred HHHHHHHHHHCcC--cHHHHHHHHHHHHHH
Confidence 3344455555553 333333444433333
No 156
>PHA02955 hypothetical protein; Provisional
Probab=21.36 E-value=93 Score=28.30 Aligned_cols=19 Identities=21% Similarity=0.670 Sum_probs=11.7
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 019591 314 SNRWLMIKIFAVIIFFLTV 332 (338)
Q Consensus 314 ~~r~~~~~i~~~l~i~~~~ 332 (338)
..+|+++.+.+++++|+++
T Consensus 178 ~~~w~ii~~v~ii~~~v~l 196 (213)
T PHA02955 178 SIKWFIIYIVLCLLILIIL 196 (213)
T ss_pred CCcchhHHHHHHHHHHHHH
Confidence 4589887666655555443
No 157
>PHA03164 hypothetical protein; Provisional
Probab=21.35 E-value=76 Score=24.08 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 019591 317 WLMIKIFAVIIFFLTVFMFFV 337 (338)
Q Consensus 317 ~~~~~i~~~l~i~~~~~vl~~ 337 (338)
..-++|+..|+|-.++|++|+
T Consensus 57 tftFlvLtgLaIamILfiifv 77 (88)
T PHA03164 57 TFTFLVLTGLAIAMILFIIFV 77 (88)
T ss_pred eeehHHHHHHHHHHHHHHHHH
Confidence 355555556666666666664
No 158
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=21.04 E-value=2.1e+02 Score=26.59 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHH
Q 019591 299 EGARNALLRHLNQISSNR--WLMIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 299 ~~g~~eL~ka~~~~~~~r--~~~~~i~~~l~i~~~~~vl 335 (338)
+.+.=+..++.+--+++| |+++.+|.++.+.+++-|.
T Consensus 24 ~a~~~~~~r~~~~~r~r~~~~~va~~~~~l~v~~~~~Ia 62 (239)
T COG3736 24 EARNWEEDRVIKLERSRRLAWRVAILFTLLAVAAVIAIA 62 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333334 5555555554444444443
No 159
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=21.03 E-value=1.1e+02 Score=26.14 Aligned_cols=28 Identities=11% Similarity=-0.093 Sum_probs=17.1
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHHHhC
Q 019591 311 QISSNRWLMIKIFAVIIFFLTVFMFFVA 338 (338)
Q Consensus 311 ~~~~~r~~~~~i~~~l~i~~~~~vl~~~ 338 (338)
..++..|.+++++++.+|+++++++|.+
T Consensus 112 ~~~~~~~~~i~~~i~g~ll~i~~giy~~ 139 (145)
T PF10661_consen 112 KTKKPISPTILLSIGGILLAICGGIYVV 139 (145)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566777777777753
No 160
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=21.03 E-value=58 Score=30.98 Aligned_cols=11 Identities=9% Similarity=0.468 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 019591 324 AVIIFFLTVFM 334 (338)
Q Consensus 324 ~~l~i~~~~~v 334 (338)
+||+++|+.|+
T Consensus 286 ~vl~i~~Ig~~ 296 (305)
T PF04639_consen 286 GVLLIVFIGYF 296 (305)
T ss_pred HHHHHHHhhhe
Confidence 33444444443
No 161
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=20.95 E-value=2.5e+02 Score=21.00 Aligned_cols=34 Identities=32% Similarity=0.295 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSM 81 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~l 81 (338)
.++|...+.-|..-|..|..|+-.|.+-.||...
T Consensus 22 d~e~~atls~i~eli~~IN~kIl~lNKKsKKn~~ 55 (71)
T PF06015_consen 22 DSEFAATLSAIKELISQINLKILALNKKSKKNTR 55 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCC
Confidence 6889999999999999999999998888877544
No 162
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=20.90 E-value=4.6e+02 Score=21.75 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 019591 303 NALLRHL 309 (338)
Q Consensus 303 ~eL~ka~ 309 (338)
++|..+.
T Consensus 61 Kelle~L 67 (121)
T PF03310_consen 61 KELLEAL 67 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 163
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=20.87 E-value=85 Score=25.19 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 019591 319 MIKIFAVIIFFLTVFM 334 (338)
Q Consensus 319 ~~~i~~~l~i~~~~~v 334 (338)
|+++++|+-|++++||
T Consensus 19 MLiVLlIISiLlLl~i 34 (107)
T COG4537 19 MLIVLLIISILLLLFI 34 (107)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4444555555555554
No 164
>PF15551 DUF4656: Domain of unknown function (DUF4656)
Probab=20.69 E-value=1.6e+02 Score=28.48 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=25.5
Q ss_pred HHHHHHHHHH------Hhh--cCCCCCCHHHHHHHHHHHHHHHH
Q 019591 66 SQKIARLAKL------AKR--SSMFDDPIVEIQELTALIKDDIT 101 (338)
Q Consensus 66 ~~kl~~L~~L------~kr--~~lFdD~~~eI~~Lt~~Ik~~i~ 101 (338)
..||-+|=.+ ||= .+.|-.+..+|.+|.+.|.||-+
T Consensus 215 ~kKL~elfs~hqi~elakctsdtvFl~Kt~~IsdLI~sitqdy~ 258 (370)
T PF15551_consen 215 TKKLTELFSLHQIDELAKCTSDTVFLEKTNEISDLINSITQDYN 258 (370)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHhhhhhHHHHHHHHHHHhcc
Confidence 3455555444 443 35599999999999999999853
No 165
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=20.53 E-value=1.2e+02 Score=23.47 Aligned_cols=11 Identities=9% Similarity=0.136 Sum_probs=5.6
Q ss_pred ccchHHHHHHH
Q 019591 314 SNRWLMIKIFA 324 (338)
Q Consensus 314 ~~r~~~~~i~~ 324 (338)
.+||.++.+.+
T Consensus 8 ~K~k~~l~~~~ 18 (96)
T PF13800_consen 8 AKRKSRLRTVV 18 (96)
T ss_pred HHHHHHHHHHH
Confidence 34456665443
No 166
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.46 E-value=83 Score=23.53 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 019591 322 IFAVIIFFLTVFMF 335 (338)
Q Consensus 322 i~~~l~i~~~~~vl 335 (338)
+|++|++++++|++
T Consensus 14 ~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 14 IFAVLFVWLLFYVL 27 (71)
T ss_pred cHHHHHHHHHHHHH
Confidence 46667777777664
No 167
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.41 E-value=3.3e+02 Score=19.37 Aligned_cols=8 Identities=25% Similarity=0.621 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 019591 284 AIRIDDNM 291 (338)
Q Consensus 284 idrId~nv 291 (338)
|+.|+.||
T Consensus 30 ve~i~env 37 (55)
T PF05377_consen 30 VEKIEENV 37 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 168
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=20.36 E-value=98 Score=19.91 Aligned_cols=17 Identities=18% Similarity=0.254 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019591 319 MIKIFAVIIFFLTVFMF 335 (338)
Q Consensus 319 ~~~i~~~l~i~~~~~vl 335 (338)
+-+++.++++++.+.-+
T Consensus 12 iT~v~v~lM~i~tvg~v 28 (35)
T PF13253_consen 12 ITMVVVWLMLILTVGSV 28 (35)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 169
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=2.7e+02 Score=25.43 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 51 FNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQT 112 (338)
Q Consensus 51 F~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~ 112 (338)
|...=++-..-..++..|+.++-.+. ..|=..+...|+..+...+.-|.+..-
T Consensus 5 fe~yEqqy~~l~a~it~k~~~~~~~~---------~~ekk~~l~~i~~~leEa~ell~qMdl 57 (220)
T KOG1666|consen 5 FEGYEQQYRELSAEITKKIGRALSLP---------GSEKKQLLSEIDSKLEEANELLDQMDL 57 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCC---------chHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 43344444445555555555544321 233345556666777777777765443
No 170
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=20.07 E-value=4e+02 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 019591 317 WLMIKIFAVIIFFLTVFMFFV 337 (338)
Q Consensus 317 ~~~~~i~~~l~i~~~~~vl~~ 337 (338)
|++..|+.+|+.|-.+|.+.|
T Consensus 53 l~l~ail~lL~a~Ya~fyl~l 73 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLNL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555556666666655555544
No 171
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=20.06 E-value=1.7e+02 Score=19.87 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 019591 325 VIIFFLTVFMF 335 (338)
Q Consensus 325 ~l~i~~~~~vl 335 (338)
++|.+++++++
T Consensus 38 ilicllli~ii 48 (52)
T PF04272_consen 38 ILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
Done!