Query 019591
Match_columns 338
No_of_seqs 190 out of 1014
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:08:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 100.0 2E-33 6.8E-38 263.6 7.4 231 44-316 39-279 (279)
2 1dn1_B Syntaxin 1A, syntaxin b 100.0 9.6E-28 3.3E-32 223.5 17.6 237 44-320 26-266 (267)
3 3hd7_B Syntaxin-1A; membrane p 99.9 1.3E-23 4.6E-28 169.9 14.0 83 245-327 12-94 (109)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 3.3E-22 1.1E-26 151.9 10.4 74 247-320 3-76 (77)
5 3c98_B Syntaxin-1A; protein co 99.9 2.5E-21 8.5E-26 178.9 14.4 263 4-320 12-278 (279)
6 2nps_B Syntaxin 13, vesicle-as 99.9 2.4E-21 8.1E-26 144.8 10.1 70 250-319 2-71 (71)
7 1sfc_B Protein (syntaxin 1A), 99.8 1.8E-20 6.1E-25 144.3 10.5 72 245-316 12-83 (83)
8 3b5n_B Protein SSO1; snare com 99.8 4.5E-20 1.5E-24 137.1 11.0 67 247-313 3-69 (69)
9 1fio_A SSO1 protein; four heli 99.8 3.4E-19 1.1E-23 158.1 14.5 182 48-281 4-196 (196)
10 1n7s_B Syntaxin 1A; neuronal s 99.8 4E-19 1.4E-23 131.6 10.4 64 246-309 4-67 (68)
11 1gl2_B Syntaxin 7; membrane pr 99.8 1.9E-19 6.4E-24 132.1 8.4 63 247-309 2-64 (65)
12 1ez3_A Syntaxin-1A; three heli 98.8 8.9E-08 3E-12 78.5 14.9 116 46-162 5-124 (127)
13 1s94_A S-syntaxin; three helix 98.8 9.2E-09 3.2E-13 89.7 9.4 154 4-171 6-164 (180)
14 3hd7_B Syntaxin-1A; membrane p 97.7 0.00099 3.4E-08 53.1 13.3 90 238-331 12-101 (109)
15 2dnx_A Syntaxin-12; snare, HAB 97.5 0.0049 1.7E-07 50.5 15.9 107 47-159 8-117 (130)
16 2nps_D Syntaxin-6; vesicle fus 97.1 0.0024 8.3E-08 48.1 8.1 64 253-316 18-81 (82)
17 3hd7_A Vesicle-associated memb 96.8 0.026 8.8E-07 43.3 11.9 42 254-295 5-46 (91)
18 1mqs_B SED5P, integral membran 96.5 0.00051 1.7E-08 46.6 0.2 22 3-24 6-27 (50)
19 1n7s_D SNAP-25A; neuronal snar 96.3 0.039 1.3E-06 39.5 9.6 57 251-307 7-63 (66)
20 1sfc_D Protein (SNAP-25B), pro 96.3 0.04 1.4E-06 41.8 10.0 60 248-307 23-82 (87)
21 1nhl_A Synaptosomal-associated 96.0 0.047 1.6E-06 37.6 8.4 42 265-306 11-52 (54)
22 1gl2_D Syntaxin 8, vesicle tra 95.8 0.041 1.4E-06 39.3 7.5 57 251-307 6-62 (65)
23 1n7s_C SNAP-25A; neuronal snar 95.7 0.16 5.4E-06 37.8 10.9 57 250-306 19-75 (79)
24 1l4a_D S-SNAP25 fusion protein 95.1 0.099 3.4E-06 39.6 8.1 58 250-307 26-83 (87)
25 3b5n_D Protein transport prote 94.3 0.48 1.6E-05 33.7 9.6 56 252-307 8-63 (64)
26 3b5n_C Protein transport prote 93.9 0.87 3E-05 33.0 10.4 32 276-307 34-65 (70)
27 1l4a_C S-SNAP25 fusion protein 93.8 0.22 7.5E-06 37.4 7.2 53 253-305 26-78 (83)
28 2kog_A Vesicle-associated memb 90.2 0.019 6.6E-07 46.3 -2.7 39 255-293 34-72 (119)
29 1gl2_C VTI1B, vesicle transpor 88.5 4 0.00014 28.8 8.9 44 263-306 18-61 (65)
30 1jth_B Syntaxin 1A; coiled-coi 86.8 6.6 0.00023 28.5 9.5 71 244-318 7-77 (77)
31 2nps_C Vesicle transport throu 86.6 7.9 0.00027 28.5 10.8 62 253-314 18-79 (81)
32 4dnd_A Syntaxin-10, SYN10; str 78.5 24 0.00083 28.3 12.3 98 48-147 26-126 (130)
33 2c5k_T Syntaxin TLG1, T-snare 78.4 20 0.00068 27.2 11.1 85 49-150 6-92 (95)
34 3hd7_A Vesicle-associated memb 69.5 33 0.0011 25.7 12.2 20 247-266 26-45 (91)
35 2dnx_A Syntaxin-12; snare, HAB 56.4 73 0.0025 25.2 11.4 29 141-169 92-120 (130)
36 1sfc_A VAMP 2, protein (synapt 56.3 62 0.0021 24.4 8.8 41 254-294 30-70 (96)
37 3r84_A Mediator of RNA polymer 55.1 63 0.0021 24.1 8.5 60 248-307 2-65 (86)
38 1zke_A Hypothetical protein HP 54.3 60 0.002 23.6 8.2 54 52-105 4-73 (83)
39 3ghg_A Fibrinogen alpha chain; 52.9 1.2E+02 0.004 30.1 11.3 24 271-294 134-157 (562)
40 4gwp_A Mediator of RNA polymer 52.0 47 0.0016 26.1 6.8 63 247-309 4-70 (115)
41 3n27_A Fusion glycoprotein F0, 45.9 72 0.0025 23.3 6.5 62 249-312 15-76 (80)
42 2l3l_A Tubulin-specific chaper 42.6 59 0.002 25.3 6.2 52 96-149 56-107 (111)
43 2nps_B Syntaxin 13, vesicle-as 42.2 86 0.003 21.9 9.2 59 247-305 6-64 (71)
44 1sfc_B Protein (syntaxin 1A), 41.8 97 0.0033 22.4 9.5 65 240-304 14-78 (83)
45 1jdm_A Sarcolipin; helix, memb 39.3 25 0.00085 20.7 2.6 21 316-336 6-26 (31)
46 1n7s_B Syntaxin 1A; neuronal s 36.6 1E+02 0.0036 21.3 9.4 55 247-301 12-66 (68)
47 3b5n_A Synaptobrevin homolog 1 36.6 99 0.0034 21.0 8.4 39 255-293 3-41 (61)
48 2ww9_B Protein transport prote 36.4 39 0.0013 24.9 3.9 27 282-308 13-39 (80)
49 3p8c_F ABL interactor 2; actin 35.7 1.9E+02 0.0064 24.0 9.1 52 248-299 48-99 (159)
50 2nps_A VAMP-4, vesicle-associa 35.5 1E+02 0.0035 21.8 6.2 37 257-293 11-47 (74)
51 1gl2_B Syntaxin 7; membrane pr 34.6 1.1E+02 0.0038 21.0 8.6 56 247-302 9-64 (65)
52 3b5n_B Protein SSO1; snare com 34.4 1.2E+02 0.004 21.1 10.3 57 247-303 10-66 (69)
53 3efg_A Protein SLYX homolog; x 33.4 1.4E+02 0.0046 21.6 6.7 47 254-300 14-60 (78)
54 3zx6_A HAMP, methyl-accepting 33.2 2.8E+02 0.0096 25.3 10.7 55 246-300 219-273 (341)
55 2ic6_A Nucleocapsid protein; h 32.9 1.4E+02 0.0048 21.7 7.0 65 87-151 5-70 (78)
56 2k48_A Nucleoprotein; viral pr 31.3 1.8E+02 0.0061 22.4 8.9 65 87-151 35-100 (107)
57 2ke4_A CDC42-interacting prote 31.1 1.2E+02 0.004 23.0 6.1 67 44-111 13-82 (98)
58 1qu7_A Methyl-accepting chemot 29.9 2.3E+02 0.0079 24.4 8.8 55 246-300 139-193 (227)
59 3c98_B Syntaxin-1A; protein co 27.5 2.4E+02 0.0082 24.1 8.5 73 242-318 207-279 (279)
60 3ajm_A Programmed cell death p 27.3 2.9E+02 0.01 23.9 8.5 56 87-159 122-177 (213)
61 4fi5_A Nucleoprotein; structur 27.0 2.2E+02 0.0074 22.1 6.9 59 88-146 23-82 (113)
62 3arc_I Photosystem II reaction 26.8 65 0.0022 20.0 3.1 17 318-334 2-20 (38)
63 1deq_A Fibrinogen (alpha chain 26.3 4.2E+02 0.014 25.0 12.4 87 56-149 63-157 (390)
64 1urq_A M-tomosyn isoform; tran 26.3 1.6E+02 0.0056 20.3 7.4 38 256-293 6-43 (63)
65 2l5g_B Putative uncharacterize 26.1 1.2E+02 0.0042 19.3 4.4 27 48-74 4-30 (42)
66 3e7k_A TRPM7 channel; coiled-c 25.8 1.2E+02 0.0042 20.6 4.6 29 87-115 19-47 (56)
67 1t3j_A Mitofusin 1; coiled coi 25.3 2.2E+02 0.0076 21.5 8.4 29 87-115 43-71 (96)
68 1l4a_A Synaptobrevin; snare, s 24.5 1.8E+02 0.006 20.9 5.8 39 255-293 16-54 (80)
69 1p68_A De novo designed protei 24.1 2.1E+02 0.007 20.7 6.2 29 126-154 32-69 (102)
70 2bez_C E2 glycoprotein; coiled 20.1 2.5E+02 0.0086 20.2 8.9 56 49-110 12-67 (77)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.98 E-value=2e-33 Score=263.58 Aligned_cols=231 Identities=19% Similarity=0.229 Sum_probs=155.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019591 44 PASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRS---SMFDD---PIVEIQELTALIKDDITALNMALSDLQTLQNLE 117 (338)
Q Consensus 44 ~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~---~lFdD---~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~ 117 (338)
....+++|+..++.|..+|..+..++.+|.+||++. +.|+| ...+|+.|+..|++.+..|+..|+.|+...+..
T Consensus 39 ~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~ 118 (279)
T 2xhe_B 39 PEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA 118 (279)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999875 55776 358999999999999999999999999866432
Q ss_pred hhc---CCCchh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCC
Q 019591 118 IVE---GNYSQD-RVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPW 193 (338)
Q Consensus 118 ~~~---g~~~~~-~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (338)
... +..+.. ..+|+.+++..|..+|++++..|++++..|.+++|.+..|.-.+.. | .+.
T Consensus 119 ~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~------~-----------~~~ 181 (279)
T 2xhe_B 119 QQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVE------P-----------SLS 181 (279)
T ss_dssp HHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSC------C-----------CCS
T ss_pred hhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------C-----------CCC
Confidence 110 011222 5589999999999999999999999999999999987665311110 1 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 194 SSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHL 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~l 273 (338)
.. .+.+ ....|. +. .+++.+.+..+....++++|+++|.+||++|.||++||.||
T Consensus 182 ~e-----------e~~~-~~e~g~-----------~~--~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dl 236 (279)
T 2xhe_B 182 DD-----------AIQK-VIEHGT-----------EG--IFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDM 236 (279)
T ss_dssp ST-----------THHH-HHHHC------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----------HHHH-HHhCCc-----------hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 000000 00 01111122233455689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019591 274 ATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 316 (338)
Q Consensus 274 a~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r 316 (338)
++||.+||++||+||+||+.|..||++|+.+|.||..|++++|
T Consensus 237 a~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 237 STLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp HTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 9999999999999999999999999999999999999998876
No 2
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.95 E-value=9.6e-28 Score=223.51 Aligned_cols=237 Identities=18% Similarity=0.169 Sum_probs=164.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 019591 44 PASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSM--FDDP--IVEIQELTALIKDDITALNMALSDLQTLQNLEIV 119 (338)
Q Consensus 44 ~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~l--FdD~--~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~ 119 (338)
+...+.+|+..++.|..+|..+..++.+|.++|++... ..|. ..+|+.++..|++.+..|...|+.|........
T Consensus 26 ~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~- 104 (267)
T 1dn1_B 26 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE- 104 (267)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 34568999999999999999999999999999987422 3333 378999999999999999999999987643211
Q ss_pred cCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCC
Q 019591 120 EGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNA 199 (338)
Q Consensus 120 ~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
++..+....+.+.+++..|..+|++++..|+.++..|.+.+|.+..|.-.+.++...... +.. . ..++ .
T Consensus 105 ~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdee-ie~-------~-ie~g--~ 173 (267)
T 1dn1_B 105 GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEE-LED-------M-LESG--N 173 (267)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH-HHH-------H-HHTC--S
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHH-HHH-------H-HhCC--c
Confidence 112234556888999999999999999999999999999999988887555432211000 000 0 0000 0
Q ss_pred CCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 200 SESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQ 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~ 279 (338)
...|. ...+ .. .........++++|+++|.+||++|.||++||.||++||.+
T Consensus 174 ~~~f~-----------------q~~l---~~--------~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~ 225 (267)
T 1dn1_B 174 PAIFA-----------------SGII---MD--------SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVES 225 (267)
T ss_dssp SCTTT-----------------TTCC---CC--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHH-----------------HHHH---Hh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00010 0000 00 00112345789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 019591 280 QGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI 320 (338)
Q Consensus 280 Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 320 (338)
||++||+||+||+.|..||+.|+.+|.||..|++++|++.|
T Consensus 226 Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 226 QGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp HCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999988886654
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.91 E-value=1.3e-23 Score=169.85 Aligned_cols=83 Identities=25% Similarity=0.336 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 019591 245 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFA 324 (338)
Q Consensus 245 ~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~ 324 (338)
..+++++|++++.+||++|.||++||+||++||.+||++||+||+||++|..||+.|+.+|.||.+|++++|+++|.+++
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~ 91 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIII 91 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHH
Confidence 45789999999999999999999999999999999999999999999999999999999999998887777654444444
Q ss_pred HHH
Q 019591 325 VII 327 (338)
Q Consensus 325 ~l~ 327 (338)
+++
T Consensus 92 ~~~ 94 (109)
T 3hd7_B 92 CCV 94 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.87 E-value=3.3e-22 Score=151.88 Aligned_cols=74 Identities=27% Similarity=0.369 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI 320 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 320 (338)
.++++|+++|.+||++|.||++||+||++||.+||++||+||+||+.|..||++|+.+|.||.++++++|+++|
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~ 76 (77)
T 1jth_B 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999987765
No 5
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.86 E-value=2.5e-21 Score=178.88 Aligned_cols=263 Identities=17% Similarity=0.169 Sum_probs=170.8
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 019591 4 PYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSM-- 81 (338)
Q Consensus 4 ~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~l-- 81 (338)
+++|||.||+.+.......... ........+.+|+..+++|...|.++...+.+|.+++++...
T Consensus 12 ~mkDr~~el~~~~~~~~~~~~~--------------~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~ 77 (279)
T 3c98_B 12 SMKDRTQELRTAKDSDDDDDVT--------------VTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASP 77 (279)
T ss_dssp --CCCCTTTC-------------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHhhhcccccchh--------------hhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6899999999887665432211 111223568999999999999999999999999999976322
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 82 --FDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTEN 159 (338)
Q Consensus 82 --FdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~ 159 (338)
..+...+|+.++..|+..+..++..+..+.......... ........+..+.+..|...++.+...|...+..|...
T Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i-~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~v 156 (279)
T 3c98_B 78 NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL-NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRER 156 (279)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222347899999999999999999999888765543221 23456778889999999999999999999999999988
Q ss_pred HHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHH
Q 019591 160 IKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQ 239 (338)
Q Consensus 160 lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ 239 (338)
++....+....+............ ..... ...+ ... . ....
T Consensus 157 va~evr~la~~~~~~~~~~~~~~~-------~~~~~----~~~~---------------------~~~-~------~~~~ 197 (279)
T 3c98_B 157 CKGRIQRQLEITGRTTTSEELEDM-------LESGN----PAIF---------------------ASG-I------IMDS 197 (279)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHH-------HHSCC----TTSS---------------------TTT-S------CSCS
T ss_pred HHHHHHHHHHhhccCccchHHHHH-------HHhhh----hHHH---------------------HHH-H------HHHH
Confidence 887776665554332110000000 00000 0000 000 0 0011
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 019591 240 QVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLM 319 (338)
Q Consensus 240 ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~ 319 (338)
+.......++++|..++.+|+.+|.+|+++|.+|+.+|.+|++++++|++||+++..+|+.|..+|.+|.++++++|++.
T Consensus 198 ~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk 277 (279)
T 3c98_B 198 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 277 (279)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 12334567889999999999999999999999999999999999999999999999999999999999999888877554
Q ss_pred H
Q 019591 320 I 320 (338)
Q Consensus 320 ~ 320 (338)
|
T Consensus 278 ~ 278 (279)
T 3c98_B 278 I 278 (279)
T ss_dssp -
T ss_pred c
Confidence 3
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.85 E-value=2.4e-21 Score=144.84 Aligned_cols=70 Identities=31% Similarity=0.429 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 019591 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLM 319 (338)
Q Consensus 250 ~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~ 319 (338)
++|+++|.+||++|.||++||+||++||.+||++||+||+||+.|..||+.|..+|.||..|++++|+++
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999988753
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.83 E-value=1.8e-20 Score=144.25 Aligned_cols=72 Identities=26% Similarity=0.370 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019591 245 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 316 (338)
Q Consensus 245 ~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r 316 (338)
...++++|+++|.+||++|.||++||+||++||.+||++||+||+||+.|..||++|..+|.||.+|++++|
T Consensus 12 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 456899999999999999999999999999999999999999999999999999999999999999998876
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.82 E-value=4.5e-20 Score=137.09 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQIS 313 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~ 313 (338)
.++++|+++|.+||++|.||++||+||++||.+||++||+||+||+.|..||++|+.+|.||.+|++
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999999999999999999999999998874
No 9
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.81 E-value=3.4e-19 Score=158.12 Aligned_cols=182 Identities=15% Similarity=0.168 Sum_probs=135.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSS-M--FDD---PIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEG 121 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~-l--FdD---~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g 121 (338)
..+|+..+++|..+|..+..++.+|.++|++.. . ++| -..+|+.++..|++.+..|+..|+.|.....
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~------ 77 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI------ 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 567999999999999999999999999998832 2 222 1368999999999999999999999886431
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCC
Q 019591 122 NYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASE 201 (338)
Q Consensus 122 ~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
..++..+++..|..+|++++..|++++..|.+.+|.+..|+-....+.. +.. .
T Consensus 78 -----~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~-~~~--e------------------- 130 (196)
T 1fio_A 78 -----HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEA-TED--E------------------- 130 (196)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-CHH--H-------------------
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHH--H-------------------
Confidence 1367889999999999999999999999999999999988744432211 000 0
Q ss_pred CCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHH-----HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 202 SSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSML-----QQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATM 276 (338)
Q Consensus 202 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q-----~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~m 276 (338)
. ... ++..+..+.+++.. .+.......++++|+++|.+||++|.||++||+|||+|
T Consensus 131 -----------~---~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~L 191 (196)
T 1fio_A 131 -----------V---EAA-----ISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEEL 191 (196)
T ss_dssp -----------H---HHH-----TSHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -----------H---HHH-----HHcCCchhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 00000001111110 11123456789999999999999999999999999999
Q ss_pred HHHHH
Q 019591 277 VAQQG 281 (338)
Q Consensus 277 V~~Qg 281 (338)
|++||
T Consensus 192 V~~QG 196 (196)
T 1fio_A 192 VIEQQ 196 (196)
T ss_dssp CCCCC
T ss_pred HHhcC
Confidence 99998
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.79 E-value=4e-19 Score=131.59 Aligned_cols=64 Identities=27% Similarity=0.397 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 246 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL 309 (338)
Q Consensus 246 ~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~ 309 (338)
..++++|+++|.+||++|.||++||+||++||.+||++||+||+||+.|..||++|+.+|.||.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3588999999999999999999999999999999999999999999999999999999999984
No 11
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.79 E-value=1.9e-19 Score=132.15 Aligned_cols=63 Identities=24% Similarity=0.432 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL 309 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~ 309 (338)
.++++|+++|.+||++|.||++||+||++||.+||++||+||+||+.|..||+.|..+|.||.
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999999999999999999999999999999999985
No 12
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=98.85 E-value=8.9e-08 Score=78.48 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=94.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 019591 46 SSRSEFNKKASRIGLGIHEASQKIARLAKLAKRS---SMFDDP-IVEIQELTALIKDDITALNMALSDLQTLQNLEIVEG 121 (338)
Q Consensus 46 ~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~---~lFdD~-~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g 121 (338)
..+.+|+..+++|..+|..+..++.+|..+|.+. +..++. ..+++.++..|+.....|+..|+.|........ +.
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~-~~ 83 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE-GL 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc
Confidence 3578899999999999999999999999999863 233222 268999999999999999999999887554221 11
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 122 NYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKA 162 (338)
Q Consensus 122 ~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~ 162 (338)
+.++...+.+.+++.+|..+|++++.+|+.++..|.+.+|.
T Consensus 84 ~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 84 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456678899999999999999999999999999887764
No 13
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=98.84 E-value=9.2e-09 Score=89.72 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=94.7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Q 019591 4 PYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPN-PASSRSEFNKKASRIGLGIHEASQKIARLAKLAKR-SSM 81 (338)
Q Consensus 4 ~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr-~~l 81 (338)
.++||+.|++.....-. ..+ . ...... ....+..|+..+..|..+|..+..++.+|.++|.+ .+.
T Consensus 6 ~mkDRl~eL~~~~~~~~----~~~-----~----~~~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~ 72 (180)
T 1s94_A 6 RTKDRLAALKAAVSDEE----DVE-----E----VAVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA 72 (180)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred chhHHHHHHhccccCCC----ccc-----c----ccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56999999998432110 000 0 001111 33567889999999999999999999999999987 333
Q ss_pred CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 82 FDDP---IVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTE 158 (338)
Q Consensus 82 FdD~---~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~ 158 (338)
+++. ..+++.++..|+.....|+..|+.|.......... +.++...+.+.+.+..|..+|.+++.+|+.++..|.+
T Consensus 73 ~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~-~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~ 151 (180)
T 1s94_A 73 PQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHS-NKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRD 151 (180)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 37899999999999999999999998755432111 1234556888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 019591 159 NIKAHESRKQIFS 171 (338)
Q Consensus 159 ~lk~~~~R~~~f~ 171 (338)
.+|.+-.|.-.+.
T Consensus 152 ~~K~~i~Rq~~I~ 164 (180)
T 1s94_A 152 RCKARIKRQMEIT 164 (180)
T ss_dssp CCCCC--------
T ss_pred HHHHHHHHHHHHh
Confidence 9988877654443
No 14
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.69 E-value=0.00099 Score=53.08 Aligned_cols=90 Identities=4% Similarity=0.095 Sum_probs=75.7
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 019591 238 LQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 317 (338)
Q Consensus 238 Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~ 317 (338)
.+..+++....+.+=+..+.++..-..+|+.|..+=+.||..=..-++....||+.+...+..|. +|.++.++++|
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~----~yqk~~rkk~~ 87 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV----KYQSKARRKKI 87 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcce
Confidence 34445566778899999999999999999999999999999999999999999999999999997 56666777788
Q ss_pred HHHHHHHHHHHHHH
Q 019591 318 LMIKIFAVIIFFLT 331 (338)
Q Consensus 318 ~~~~i~~~l~i~~~ 331 (338)
+|+++++++++++.
T Consensus 88 i~l~~~~i~~~i~~ 101 (109)
T 3hd7_B 88 MIIICCVILGIIIA 101 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHH
Confidence 88777766655443
No 15
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=0.0049 Score=50.52 Aligned_cols=107 Identities=18% Similarity=0.144 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 019591 47 SRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPI---VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNY 123 (338)
Q Consensus 47 ~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~---~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~ 123 (338)
...+|...+..|+..|..|...+..|.++.+.-+.--|.+ ..|..+...+.+.+......|+.|....+..
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~------ 81 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPL------ 81 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS------
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------
Confidence 3567999999999999999999999999998876656664 5799999999999999999999988754211
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 124 SQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTEN 159 (338)
Q Consensus 124 ~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~ 159 (338)
+....++......-|...++++-..|+.++..+.+.
T Consensus 82 ~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aek 117 (130)
T 2dnx_A 82 STSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEK 117 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334444444444444444555555554444443
No 16
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.06 E-value=0.0024 Score=48.11 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019591 253 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 316 (338)
Q Consensus 253 ~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r 316 (338)
++.+..|..+|..|..|-.+++.=|.+|.++||+|+..++.+...+..+.+.+.+...+.+.+|
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 4467889999999999999999999999999999999999999999999999988887665543
No 17
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.77 E-value=0.026 Score=43.31 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 254 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESL 295 (338)
Q Consensus 254 ~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~ 295 (338)
+.+.++...+.|+..+..+=-.-|.+-||-||.+++..++-.
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 457788888889988888888888999999998887766443
No 18
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.00051 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.0
Q ss_pred CCCCCchHHHHHHHHHHHhhcC
Q 019591 3 SPYRDRTAEFRSLSQTLKKIGG 24 (338)
Q Consensus 3 ~~~~DRT~eF~~~~~~~~~~~~ 24 (338)
++++|||.||+++|.+++++.+
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~~ 27 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRNK 27 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC-
T ss_pred ccccccCHHHHHHHHHHHhccc
Confidence 3689999999999999998774
No 19
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.31 E-value=0.039 Score=39.51 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 251 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 307 (338)
Q Consensus 251 ~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~k 307 (338)
+=.+.+..|...|..|..|-.+++.=|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 346678889999999999999999999999999999999999999999999887754
No 20
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.26 E-value=0.04 Score=41.80 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 248 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 307 (338)
Q Consensus 248 ~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~k 307 (338)
...+-.+.+..|...|..|..|-.+|+.=|.+|.++||+|+..++.+...+..+++.+.+
T Consensus 23 ~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 23 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344556788899999999999999999999999999999999999999999999887754
No 21
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.00 E-value=0.047 Score=37.61 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 265 ELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 306 (338)
Q Consensus 265 eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ 306 (338)
|--++=..-..++.+|||.|+||+.+++++..++..|.+.|.
T Consensus 11 ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 11 ESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 333333455667889999999999999999999999998874
No 22
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.77 E-value=0.041 Score=39.29 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 251 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 307 (338)
Q Consensus 251 ~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~k 307 (338)
+=++.+..|..+|..|.+|-.+++.=|.+|..+||+|+..++.+...+..+.+.+.+
T Consensus 6 eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 6 EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677889999999999999999999999999999999999999999999877644
No 23
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.73 E-value=0.16 Score=37.79 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 306 (338)
Q Consensus 250 ~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ 306 (338)
++-.+.+++..+.+.|--++=.....++..|||.|+||+.+++++..++..|.+.|.
T Consensus 19 ~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~ 75 (79)
T 1n7s_C 19 DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 333455556666666666666678888899999999999999999999999998874
No 24
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.14 E-value=0.099 Score=39.65 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 250 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 307 (338)
Q Consensus 250 ~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~k 307 (338)
.+-++.+..|...+..|..|=.+|+.=|..|.++||+|+..++.+...|..+++.+.+
T Consensus 26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788889999999999999999999999999999999999999999999888764
No 25
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.48 Score=33.70 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 252 RAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 307 (338)
Q Consensus 252 R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~k 307 (338)
-++.+.+|...+.-|..|=..++.=|..|-++||+|++.++.+...|..+++.|.+
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667788888888888888999999999999999999999999999999887753
No 26
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=93.92 E-value=0.87 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 276 MVAQQGELAIRIDDNMDESLANVEGARNALLR 307 (338)
Q Consensus 276 mV~~Qge~idrId~nv~~a~~~v~~g~~eL~k 307 (338)
++.+|||.|+|||.|++.+..+...|.+.|..
T Consensus 34 ~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~ 65 (70)
T 3b5n_C 34 MLGHQSEQLNNVEGNLDLMKVQNKVADEKVAE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999998853
No 27
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=93.80 E-value=0.22 Score=37.42 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 253 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNAL 305 (338)
Q Consensus 253 ~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL 305 (338)
....++.-+-+.|-.+.=..=..++..|||.|+||+.+++....+...|.+.|
T Consensus 26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445556778999999999999999999998887655
No 28
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=90.17 E-value=0.019 Score=46.27 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 255 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 293 (338)
Q Consensus 255 ~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~ 293 (338)
.+.++...+.|+..++.+=-.-|.+-||-||.+++..++
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 345566666777777777666778888888888766554
No 29
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=88.52 E-value=4 Score=28.82 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 263 ITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 306 (338)
Q Consensus 263 i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ 306 (338)
+.|--+|=.....-+..|+|.|.+....+.++..++..+.+-|.
T Consensus 18 ~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 18 ATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 33333444466667788999999999999999999999987774
No 30
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=86.83 E-value=6.6 Score=28.49 Aligned_cols=71 Identities=4% Similarity=0.084 Sum_probs=52.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 019591 244 RQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 318 (338)
Q Consensus 244 ~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~ 318 (338)
+-...+.+=+..|.+|..-..+|+.|..+=+.||..=..-++....||+.+...+..|. +|.++.++++|+
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~----~~q~~~rkk~~i 77 (77)
T 1jth_B 7 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV----KYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCcccC
Confidence 34556777788889999999999999999999999889999999999999999999987 455555566654
No 31
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=86.61 E-value=7.9 Score=28.54 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019591 253 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISS 314 (338)
Q Consensus 253 ~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~ 314 (338)
.+.+.+....+.|=-+|=..+..=+..|.|.|.+....+.++..++..+.+-|..-..+.-.
T Consensus 18 ~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~ 79 (81)
T 2nps_C 18 SRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQ 79 (81)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555556666778899999999999999999999999988765554433
No 32
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=78.53 E-value=24 Score=28.32 Aligned_cols=98 Identities=10% Similarity=0.143 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---cCCCc
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIV---EGNYS 124 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~---~g~~~ 124 (338)
.-+|+...++|...|..+......-..+..-.+.. ...|+..++.+++..+..+.-.|.+|.....--.. .-+.+
T Consensus 26 ~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~--s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~ 103 (130)
T 4dnd_A 26 EDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAV--GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLP 103 (130)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCC
Confidence 34699999999999996665555443332221111 22467777777777777777777777764431110 00123
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHH
Q 019591 125 QDRVVHSTTVCDDLKSKLMGATK 147 (338)
Q Consensus 125 ~~~~~h~~nVv~~L~~kL~~~s~ 147 (338)
..+-.-+...|..++.++.++-.
T Consensus 104 ~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 104 AGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777766544
No 33
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=78.37 E-value=20 Score=27.22 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchh
Q 019591 49 SEFNKKASRIGLGIHEASQKIARLAKLAKRSSMF--DDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQD 126 (338)
Q Consensus 49 seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lF--dD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~ 126 (338)
-+|.....++...|..+... ..+++.. .....|++.....|..++..|.++|...+.- +..
T Consensus 6 DPF~~V~~D~~~ql~~l~~~-------~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~ 68 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNY-------ITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD----------ENE 68 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTC
T ss_pred CcHHHHHHHHHHHHHHHHHH-------HHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHH
Confidence 46998888888888855544 3223332 2334688888888888888888888765532 234
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH
Q 019591 127 RVVHSTTVCDDLKSKLMGATKELQ 150 (338)
Q Consensus 127 ~~~h~~nVv~~L~~kL~~~s~~Fr 150 (338)
+-..+...|..|..++..+...|.
T Consensus 69 EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 69 DVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556788899999999888877764
No 34
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=69.45 E-value=33 Score=25.65 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITEL 266 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL 266 (338)
+.+-+|.+.+..+..--.+|
T Consensus 26 ~kvL~RgekL~~L~~kt~~L 45 (91)
T 3hd7_A 26 DKVLERDQKLSELDDRADAL 45 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHH
Confidence 33444444444444433333
No 35
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.36 E-value=73 Score=25.23 Aligned_cols=29 Identities=3% Similarity=0.014 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019591 141 KLMGATKELQDVLTTRTENIKAHESRKQI 169 (338)
Q Consensus 141 kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~ 169 (338)
....++.+|+.+++.|..-.+.-.++.+.
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678999999999998877776666643
No 36
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=56.33 E-value=62 Score=24.40 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 254 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDES 294 (338)
Q Consensus 254 ~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a 294 (338)
+.+.+|...|.|+..|+.+=-.-|.+-||-||.+++-.++-
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L 70 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677788888888888888888899999999888766553
No 37
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=55.10 E-value=63 Score=24.06 Aligned_cols=60 Identities=10% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 248 YSQSRAVALHNVESTITEL----GGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 307 (338)
Q Consensus 248 ~~~~R~~~i~~ie~~i~eL----~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~k 307 (338)
|+++|.+++..|...|..| +.+|.-++..-..=..+-...+.++.+--...+.....|+|
T Consensus 2 ~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~Lrk 65 (86)
T 3r84_A 2 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRK 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999888877654 44555555443211234445556666666666666666654
No 38
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=54.34 E-value=60 Score=23.59 Aligned_cols=54 Identities=30% Similarity=0.365 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------hcCCCCCCH-------HHHHHHHHHHHHHHHHHHH
Q 019591 52 NKKASRIGLGIHEASQKIARLAKLAK---------RSSMFDDPI-------VEIQELTALIKDDITALNM 105 (338)
Q Consensus 52 ~~~a~~I~~~i~~~~~kl~~L~~L~k---------r~~lFdD~~-------~eI~~Lt~~Ik~~i~~l~~ 105 (338)
++....|-++|..++..++=|-++|+ +|+-.|=++ .+|.+=....|..|..||+
T Consensus 4 FErid~ilk~IE~~q~eI~~lL~~AkiSl~DyImiKRGS~DmPe~L~~~~~~QideeV~~LKe~IdaLNK 73 (83)
T 1zke_A 4 FEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNK 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhheeccCccCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999988888876 455544443 5677666666666666664
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.86 E-value=1.2e+02 Score=30.08 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 271 THLATMVAQQGELAIRIDDNMDES 294 (338)
Q Consensus 271 ~~la~mV~~Qge~idrId~nv~~a 294 (338)
+-|-.-|.+|-.-|+|+|-.|+..
T Consensus 134 rvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666555543
No 40
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=51.97 E-value=47 Score=26.07 Aligned_cols=63 Identities=11% Similarity=0.269 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTI----TELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL 309 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i----~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~ 309 (338)
.|+++|.+....|-..| .+++++|.-++.+=.....+=..++.|+.+--...+.+...|+|-.
T Consensus 4 ~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEI 70 (115)
T 4gwp_A 4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEI 70 (115)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999888776554 4556777777665444444555577777777777777777776654
No 41
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=45.90 E-value=72 Score=23.31 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019591 249 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 312 (338)
Q Consensus 249 ~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 312 (338)
|++-.++|.+|.....++.-..+-+...|-++|.+ .|--|+..|...++....+|.|+.+..
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~~ 76 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQKL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHHh
Confidence 45555666666666666665555555666666664 355667788888888888888876543
No 42
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=42.61 E-value=59 Score=25.29 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHH
Q 019591 96 IKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKEL 149 (338)
Q Consensus 96 Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~F 149 (338)
....|..|...|..|+.+...... -...=..+.+.+.+..|+.+|.++...+
T Consensus 56 ~~~~ld~i~~~I~~Lqk~v~das~--fLp~YD~R~~q~~i~~L~~~l~e~r~~l 107 (111)
T 2l3l_A 56 SVERLEEAASRLQGLQKLINDSVF--FLAAYDLRQGQEALARLQAALAERRRGL 107 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577777777777776653210 1223445667788888888887766543
No 43
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=42.21 E-value=86 Score=21.95 Aligned_cols=59 Identities=7% Similarity=0.065 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNAL 305 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL 305 (338)
..+..=+..|.+|..-..+|+.|..+=+.||..=..-|+....||+.+...+..|...-
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 64 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQ 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666678888889999999999999999999999999999999999999999987543
No 44
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=41.82 E-value=97 Score=22.43 Aligned_cols=65 Identities=5% Similarity=0.066 Sum_probs=53.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 240 QVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNA 304 (338)
Q Consensus 240 ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~e 304 (338)
..+..-...+.+=+..|..|..-..+|+.|..+=+.||..=..-|+....||+.+...+..|.+.
T Consensus 14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778888888888888999999999889998888888899999999999888888653
No 45
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=39.33 E-value=25 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 019591 316 RWLMIKIFAVIIFFLTVFMFF 336 (338)
Q Consensus 316 r~~~~~i~~~l~i~~~~~vl~ 336 (338)
+-+++-+-++||.++++|+++
T Consensus 6 qELf~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 6 RELFLNFTIVLITVILMWLLV 26 (31)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555556777777777764
No 46
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=36.64 E-value=1e+02 Score=21.29 Aligned_cols=55 Identities=5% Similarity=0.082 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g 301 (338)
..+.+=+..|..|..-..+|+.|..+=+.||..=..-++....||+.+...+..|
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555555555544
No 47
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=36.61 E-value=99 Score=21.00 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 255 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 293 (338)
Q Consensus 255 ~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~ 293 (338)
.+.++...+.|+..|+.+=-.-|.+-||-||.+.+..++
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467788888899888888777888999999988876654
No 48
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=36.37 E-value=39 Score=24.86 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 282 ELAIRIDDNMDESLANVEGARNALLRH 308 (338)
Q Consensus 282 e~idrId~nv~~a~~~v~~g~~eL~ka 308 (338)
+|.|.+++.++.....++.+..=|.++
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~ 39 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKC 39 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777776666544
No 49
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=35.67 E-value=1.9e+02 Score=23.96 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 248 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 299 (338)
Q Consensus 248 ~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~ 299 (338)
+-+.+....+.+.+....|+.+=..|-.|+..|.+.|.++|..|.....-|.
T Consensus 48 leeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ 99 (159)
T 3p8c_F 48 LEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD 99 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667889999999999999999999999999999999999987665543
No 50
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=35.54 E-value=1e+02 Score=21.80 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 257 HNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 293 (338)
Q Consensus 257 ~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~ 293 (338)
..|...|.|+..|..+=-.-|.+-||-||.+.+-.++
T Consensus 11 ~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 11 KHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445555556666665555667778888877765554
No 51
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=34.62 E-value=1.1e+02 Score=21.00 Aligned_cols=56 Identities=5% Similarity=0.116 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 302 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~ 302 (338)
..+..=+..|..|..-..+|+.|..+=+.||..=..-|+....||+.+...+..|.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455566666666666666766666666666666666666677776666666553
No 52
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=34.41 E-value=1.2e+02 Score=21.15 Aligned_cols=57 Identities=4% Similarity=0.033 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 247 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARN 303 (338)
Q Consensus 247 ~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~ 303 (338)
..+.+=+..|..|..-..+|+.|..+=+.||..=..-++.-..||+.+...+..|.+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666666666666666666666666665543
No 53
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.39 E-value=1.4e+02 Score=21.63 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 254 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 254 ~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
..|..+|..+.-.-....+|...|.+|...||++..-+..-...+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777788889999999999998887766666554
No 54
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=33.25 E-value=2.8e+02 Score=25.26 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 246 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 246 ~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
...+.+-.+.+.+|...+.++...+.+++..+.+|...++.|..++++...-++.
T Consensus 219 ~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 273 (341)
T 3zx6_A 219 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 273 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677888899999999999999999999999998888887766544433
No 55
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.94 E-value=1.4e+02 Score=21.70 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 019591 87 VEIQELTALIKDDITALNMALSDLQTLQNLEIVE-GNYSQDRVVHSTTVCDDLKSKLMGATKELQD 151 (338)
Q Consensus 87 ~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~-g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~ 151 (338)
..|++|-.+|+..=..|--..+.|+......... ...+++.-.-+..+|.+|+.||.++-...-+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777666666666666544322211 1235677777889999999998876444333
No 56
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.29 E-value=1.8e+02 Score=22.36 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 019591 87 VEIQELTALIKDDITALNMALSDLQTLQNLEIVE-GNYSQDRVVHSTTVCDDLKSKLMGATKELQD 151 (338)
Q Consensus 87 ~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~-g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~ 151 (338)
..|++|-.+|+..=..|--..+.|+...+..... ...+++.-.-+..+|.+|+.|+.++-...-+
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776666666666665544322211 1235667777889999999998876544443
No 57
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.11 E-value=1.2e+02 Score=23.02 Aligned_cols=67 Identities=13% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 44 PASSRSEFNKKASRIGLGIHEASQKIARLAK---LAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQ 111 (338)
Q Consensus 44 ~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~---L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq 111 (338)
+.....--.....++.++|.+-...-+-|.+ .+...|-|+|.... +.........|..|...+..++
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666655544444444 45678889987532 2222222344444444444443
No 58
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=29.95 E-value=2.3e+02 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 246 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 300 (338)
Q Consensus 246 ~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~ 300 (338)
...+.+-...+..|...+.++..++.+++..+.+|...++.|..++++...-++.
T Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 193 (227)
T 1qu7_A 139 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 193 (227)
T ss_dssp HHHHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667888888999999999999999999999999888887775554443
No 59
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=27.45 E-value=2.4e+02 Score=24.09 Aligned_cols=73 Identities=4% Similarity=0.085 Sum_probs=46.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 019591 242 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 318 (338)
Q Consensus 242 ~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~ 318 (338)
+......+..=...|.+|...+.+|+.+-.+-+.++.+=..-|+.+-.+|+.+...+..|.. +..+.+++||+
T Consensus 207 i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~----~q~~~Rkkk~i 279 (279)
T 3c98_B 207 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK----YQSKARRKKIM 279 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCcCcC
Confidence 34445667788889999999999999999999999988888899999999999999998874 44444455553
No 60
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=27.32 E-value=2.9e+02 Score=23.89 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 87 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTEN 159 (338)
Q Consensus 87 ~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~ 159 (338)
.-|-+.+..||..+..+|.-...+.. . ..-.+...+..+-.-|+.|-+.|..|++.
T Consensus 122 ~tIKeIAsaIKklLDAvn~v~~~~~~---------~--------~k~~le~~KreFVkySKrFS~TLKeYFkd 177 (213)
T 3ajm_A 122 QTIKDIASAIKELLDTVNNVFKKYQY---------Q--------NRRALEHQKKEFVKYSKSFSDTLKTYFKD 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC---------S--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcch---------h--------HHHHHHHHHHHHHHHhhHhhHHHHHHHhc
Confidence 34666666666666666654432111 0 23456667888999999999999988874
No 61
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.97 E-value=2.2e+02 Score=22.14 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCchhhHhHHHHHHHHHHHHHHHHH
Q 019591 88 EIQELTALIKDDITALNMALSDLQTLQNLEIVE-GNYSQDRVVHSTTVCDDLKSKLMGAT 146 (338)
Q Consensus 88 eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~-g~~~~~~~~h~~nVv~~L~~kL~~~s 146 (338)
.|++|-.+|+..=..|--..+.|+......... ...++..-.-+..+|.+|+.||.++-
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLK 82 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELK 82 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666665555555555555543322211 12356667778899999999987653
No 62
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=26.76 E-value=65 Score=20.05 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=7.6
Q ss_pred HHHHHHH--HHHHHHHHHH
Q 019591 318 LMIKIFA--VIIFFLTVFM 334 (338)
Q Consensus 318 ~~~~i~~--~l~i~~~~~v 334 (338)
+.++|++ +++.|+-+||
T Consensus 2 ltLKi~Vy~vV~ffvsLFi 20 (38)
T 3arc_I 2 ETLKITVYIVVTFFVLLFV 20 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeEEeeehhHHHHHHHHHH
Confidence 4455554 3333443443
No 63
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.35 E-value=4.2e+02 Score=25.05 Aligned_cols=87 Identities=10% Similarity=0.066 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhh
Q 019591 56 SRIGLGIHEASQKIARLAKLAKRS-----S---MFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDR 127 (338)
Q Consensus 56 ~~I~~~i~~~~~kl~~L~~L~kr~-----~---lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~~~~ 127 (338)
..+...|.++...|..|.+.++.. . +.-++-..++..-..+.+-...|+++|..|+....... +.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~-------~~ 135 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV-------QR 135 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-------HH
Confidence 567777888888888887765421 0 01111122333333333334444444444444333221 12
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 019591 128 VVHSTTVCDDLKSKLMGATKEL 149 (338)
Q Consensus 128 ~~h~~nVv~~L~~kL~~~s~~F 149 (338)
-+...++|..+..+++.|-.+.
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2334466666777777665544
No 64
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.26 E-value=1.6e+02 Score=20.28 Aligned_cols=38 Identities=8% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 256 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 293 (338)
Q Consensus 256 i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~ 293 (338)
+..+...+.|+..++.+=-.-|.|-||-|+.|++-.++
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888889999999988877665
No 65
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.14 E-value=1.2e+02 Score=19.34 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 48 RSEFNKKASRIGLGIHEASQKIARLAK 74 (338)
Q Consensus 48 ~seF~~~a~~I~~~i~~~~~kl~~L~~ 74 (338)
..+..+.-..|..+|.++..++.+|.+
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777664
No 66
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=25.79 E-value=1.2e+02 Score=20.60 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019591 87 VEIQELTALIKDDITALNMALSDLQTLQN 115 (338)
Q Consensus 87 ~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~ 115 (338)
.|+++....||..+..++-++..||....
T Consensus 19 ~Evnekv~~ik~sL~~LD~~lg~Lqdlsa 47 (56)
T 3e7k_A 19 KEVGDRVNYIKRSLQSLDSQIGHLQDLSA 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 57888999999999999999999887653
No 67
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=25.32 E-value=2.2e+02 Score=21.50 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019591 87 VEIQELTALIKDDITALNMALSDLQTLQN 115 (338)
Q Consensus 87 ~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~ 115 (338)
.++...+...+.+|..+++.|..|+....
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888887554
No 68
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=24.50 E-value=1.8e+02 Score=20.89 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 255 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 293 (338)
Q Consensus 255 ~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~ 293 (338)
.+..|...|.|+..|+.+=-.-|.+-||-||.+++-.++
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355666667777777777777788899999988876654
No 69
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=24.09 E-value=2.1e+02 Score=20.70 Aligned_cols=29 Identities=38% Similarity=0.454 Sum_probs=20.3
Q ss_pred hhHhHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 019591 126 DRVVHSTTVCDDLK---------SKLMGATKELQDVLT 154 (338)
Q Consensus 126 ~~~~h~~nVv~~L~---------~kL~~~s~~Fr~~l~ 154 (338)
..+.|..||+.-+- .+|++++++|+.++.
T Consensus 32 dvdnhlqnviedihdfmqgggsggklqemmkefqqvld 69 (102)
T 1p68_A 32 DVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLD 69 (102)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSTTTHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 34555556555543 379999999999975
No 70
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=20.10 E-value=2.5e+02 Score=20.24 Aligned_cols=56 Identities=20% Similarity=0.392 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591 49 SEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDL 110 (338)
Q Consensus 49 seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~~~eI~~Lt~~Ik~~i~~l~~~I~~L 110 (338)
..|+.....|..++..+..-|.+++..+... ......||..+...|..+-..|+++
T Consensus 12 ~sFN~A~~~i~~g~~tts~AL~kiQdVVN~q------~~aL~~L~~qL~~NFgAISssi~dI 67 (77)
T 2bez_C 12 NQFNKAISQIQESLTTTSTALGKLQDVVNQN------AQALNTLVKQLSSNFGAISSVLNDI 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3599999999999999999999999887654 3567778888878888777777654
Done!