Query 019592
Match_columns 338
No_of_seqs 300 out of 3052
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0572 Udk Uridine kinase [Nu 100.0 9.8E-37 2.1E-41 254.4 17.9 206 46-252 6-211 (218)
2 PTZ00301 uridine kinase; Provi 100.0 5.2E-33 1.1E-37 236.1 20.2 203 48-251 3-209 (210)
3 KOG4203 Armadillo/beta-Catenin 100.0 3.2E-33 6.9E-38 262.0 13.8 305 34-338 30-343 (473)
4 PRK05480 uridine/cytidine kina 100.0 2.1E-29 4.6E-34 216.2 20.5 206 44-250 2-207 (209)
5 PF00485 PRK: Phosphoribulokin 100.0 8.2E-30 1.8E-34 216.1 11.9 184 50-235 1-192 (194)
6 TIGR00235 udk uridine kinase. 100.0 3.9E-28 8.5E-33 207.9 19.3 205 44-249 2-206 (207)
7 cd02023 UMPK Uridine monophosp 100.0 4.2E-28 9.2E-33 206.4 18.7 196 50-246 1-196 (198)
8 cd02029 PRK_like Phosphoribulo 100.0 7.2E-28 1.6E-32 207.3 17.3 177 50-229 1-200 (277)
9 PLN02318 phosphoribulokinase/u 100.0 1.5E-27 3.3E-32 224.3 14.9 224 46-278 63-299 (656)
10 cd02025 PanK Pantothenate kina 99.9 1.8E-26 3.9E-31 198.4 16.3 183 50-234 1-213 (220)
11 PRK15453 phosphoribulokinase; 99.9 1.1E-25 2.4E-30 195.4 18.6 184 45-229 2-206 (290)
12 PLN02348 phosphoribulokinase 99.9 8.9E-26 1.9E-30 204.7 17.7 182 45-231 46-244 (395)
13 TIGR00554 panK_bact pantothena 99.9 1.6E-25 3.5E-30 198.2 16.6 186 45-232 59-279 (290)
14 PRK05439 pantothenate kinase; 99.9 5.2E-25 1.1E-29 196.1 17.3 189 44-234 82-301 (311)
15 cd02028 UMPK_like Uridine mono 99.9 4.9E-25 1.1E-29 183.8 14.5 175 50-229 1-178 (179)
16 PRK07429 phosphoribulokinase; 99.9 1.6E-23 3.5E-28 189.2 18.6 183 44-231 4-186 (327)
17 cd02026 PRK Phosphoribulokinas 99.9 2.1E-23 4.6E-28 184.7 16.6 177 50-231 1-177 (273)
18 cd02024 NRK1 Nicotinamide ribo 99.9 3.5E-22 7.6E-27 166.3 11.7 164 50-215 1-178 (187)
19 PRK09270 nucleoside triphospha 99.9 1.8E-21 3.9E-26 169.1 16.4 188 44-235 29-225 (229)
20 PRK06696 uridine kinase; Valid 99.9 1.2E-21 2.6E-26 169.6 14.7 181 45-232 19-211 (223)
21 PRK07667 uridine kinase; Provi 99.8 4.6E-20 9.9E-25 156.0 13.8 172 45-228 14-192 (193)
22 PRK08233 hypothetical protein; 99.8 1.6E-17 3.5E-22 139.3 16.4 174 47-250 2-176 (182)
23 COG4555 NatA ABC-type Na+ tran 99.7 1.7E-19 3.6E-24 147.0 0.7 139 14-167 7-170 (245)
24 COG1072 CoaA Panthothenate kin 99.7 2.7E-17 5.8E-22 141.0 13.8 146 44-191 78-233 (283)
25 PRK14733 coaE dephospho-CoA ki 99.7 2.4E-18 5.1E-23 145.2 7.1 182 46-247 4-197 (204)
26 COG1131 CcmA ABC-type multidru 99.7 8E-19 1.7E-23 157.4 3.8 143 12-169 8-175 (293)
27 COG4152 ABC-type uncharacteriz 99.7 8.9E-19 1.9E-23 146.8 3.4 259 12-317 6-286 (300)
28 PRK14730 coaE dephospho-CoA ki 99.7 4E-18 8.7E-23 144.0 6.7 167 49-233 2-180 (195)
29 PRK14732 coaE dephospho-CoA ki 99.7 3.2E-18 7E-23 144.4 5.6 177 50-246 1-188 (196)
30 PRK06547 hypothetical protein; 99.7 8E-17 1.7E-21 133.0 13.5 153 45-229 12-171 (172)
31 PF01121 CoaE: Dephospho-CoA k 99.7 3.7E-19 8E-24 147.7 -0.5 166 49-233 1-177 (180)
32 PRK00081 coaE dephospho-CoA ki 99.7 6.1E-18 1.3E-22 143.1 6.5 167 48-233 2-179 (194)
33 cd02022 DPCK Dephospho-coenzym 99.7 5.2E-18 1.1E-22 141.8 4.3 165 50-233 1-176 (179)
34 PLN02422 dephospho-CoA kinase 99.7 1.2E-17 2.7E-22 143.2 6.7 179 49-245 2-191 (232)
35 COG1116 TauB ABC-type nitrate/ 99.7 3.4E-17 7.3E-22 139.0 7.4 142 13-169 8-169 (248)
36 PTZ00451 dephospho-CoA kinase; 99.7 4.1E-17 8.9E-22 141.3 6.3 170 48-231 1-189 (244)
37 PRK14734 coaE dephospho-CoA ki 99.7 6E-17 1.3E-21 137.4 5.8 168 49-233 2-180 (200)
38 PRK14731 coaE dephospho-CoA ki 99.7 1E-16 2.2E-21 137.1 7.2 165 46-233 3-188 (208)
39 COG3839 MalK ABC-type sugar tr 99.7 6.2E-17 1.3E-21 145.2 6.0 142 13-169 8-172 (338)
40 COG1126 GlnQ ABC-type polar am 99.7 8E-17 1.7E-21 133.1 6.0 142 13-169 7-175 (240)
41 KOG3308 Uncharacterized protei 99.7 2E-16 4.3E-21 128.8 7.9 179 46-231 2-187 (225)
42 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 8E-17 1.7E-21 138.5 4.2 174 14-229 10-211 (254)
43 KOG3220 Similar to bacterial d 99.6 6.4E-17 1.4E-21 131.6 3.3 169 48-246 1-192 (225)
44 COG0237 CoaE Dephospho-CoA kin 99.6 1.3E-16 2.7E-21 134.3 5.3 173 48-246 2-191 (201)
45 PLN03046 D-glycerate 3-kinase; 99.6 4.6E-15 9.9E-20 135.3 15.3 171 45-218 209-430 (460)
46 COG1120 FepC ABC-type cobalami 99.6 7.3E-17 1.6E-21 139.4 2.6 135 15-164 9-172 (258)
47 COG1127 Ttg2A ABC-type transpo 99.6 8.3E-16 1.8E-20 129.1 7.7 143 13-170 13-185 (263)
48 COG3842 PotA ABC-type spermidi 99.6 4E-16 8.8E-21 140.7 6.0 143 12-169 9-175 (352)
49 PRK13537 nodulation ABC transp 99.6 1.7E-16 3.7E-21 143.6 3.1 142 12-168 11-176 (306)
50 COG1125 OpuBA ABC-type proline 99.6 1.2E-15 2.6E-20 128.9 7.4 137 13-168 6-173 (309)
51 COG2884 FtsE Predicted ATPase 99.6 2.8E-15 6E-20 121.4 9.0 160 15-189 8-206 (223)
52 PRK13536 nodulation factor exp 99.6 3E-16 6.4E-21 143.7 3.2 142 13-169 46-211 (340)
53 COG4586 ABC-type uncharacteriz 99.6 9E-17 1.9E-21 136.9 -0.4 182 22-248 39-247 (325)
54 COG0035 Upp Uracil phosphoribo 99.6 9.4E-16 2E-20 126.7 5.1 77 260-338 3-80 (210)
55 COG1118 CysA ABC-type sulfate/ 99.6 3E-15 6.5E-20 129.9 8.2 143 12-169 6-176 (345)
56 PLN02796 D-glycerate 3-kinase 99.6 4.1E-14 8.8E-19 127.2 15.4 169 46-217 98-317 (347)
57 PRK03333 coaE dephospho-CoA ki 99.6 2E-15 4.3E-20 140.8 6.4 181 49-248 2-193 (395)
58 TIGR01188 drrA daunorubicin re 99.6 6.6E-16 1.4E-20 139.8 2.7 136 17-167 2-161 (302)
59 TIGR00152 dephospho-CoA kinase 99.6 1.2E-15 2.5E-20 128.7 3.3 167 50-233 1-178 (188)
60 COG2274 SunT ABC-type bacterio 99.6 1.2E-15 2.6E-20 150.5 3.7 149 19-167 470-646 (709)
61 PRK13477 bifunctional pantoate 99.5 2E-14 4.3E-19 136.5 10.3 200 17-249 268-501 (512)
62 COG1136 SalX ABC-type antimicr 99.5 6.7E-15 1.5E-19 124.8 5.8 130 21-165 19-177 (226)
63 COG1124 DppF ABC-type dipeptid 99.5 1.8E-14 3.9E-19 121.5 6.2 129 22-165 22-176 (252)
64 PRK09536 btuD corrinoid ABC tr 99.5 6.6E-15 1.4E-19 137.1 3.4 139 14-167 9-176 (402)
65 cd03259 ABC_Carb_Solutes_like 99.5 1.3E-14 2.9E-19 124.8 5.1 138 15-167 7-167 (213)
66 PRK11650 ugpC glycerol-3-phosp 99.5 1.4E-14 3.1E-19 133.4 5.6 139 14-167 9-171 (356)
67 cd03225 ABC_cobalt_CbiO_domain 99.5 1.3E-14 2.8E-19 124.7 4.7 138 15-167 6-171 (211)
68 TIGR03522 GldA_ABC_ATP gliding 99.5 1.5E-14 3.2E-19 130.9 5.2 141 14-169 8-172 (301)
69 TIGR03265 PhnT2 putative 2-ami 99.5 1.5E-14 3.2E-19 133.1 5.4 141 13-168 9-172 (353)
70 TIGR00960 3a0501s02 Type II (G 99.5 1.2E-14 2.5E-19 125.4 4.4 131 22-167 18-175 (216)
71 COG3638 ABC-type phosphate/pho 99.5 1.7E-14 3.8E-19 120.9 5.2 138 15-167 10-184 (258)
72 PRK11432 fbpC ferric transport 99.5 1.6E-14 3.5E-19 132.7 5.5 141 13-168 11-174 (351)
73 COG1137 YhbG ABC-type (unclass 99.5 9.3E-16 2E-20 125.1 -2.4 139 12-165 8-174 (243)
74 TIGR03258 PhnT 2-aminoethylpho 99.5 7.2E-15 1.6E-19 135.5 2.9 141 14-169 11-176 (362)
75 TIGR01288 nodI ATP-binding ABC 99.5 1.9E-14 4E-19 130.4 5.5 140 14-168 10-173 (303)
76 PLN02541 uracil phosphoribosyl 99.5 1.7E-14 3.8E-19 124.2 5.0 76 262-338 34-112 (244)
77 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 1.9E-14 4.2E-19 124.2 5.3 132 21-167 18-177 (218)
78 COG1135 AbcC ABC-type metal io 99.5 8E-14 1.7E-18 121.3 8.8 153 21-189 20-211 (339)
79 COG1102 Cmk Cytidylate kinase 99.5 2.3E-13 5E-18 107.4 10.5 160 49-248 1-169 (179)
80 cd03293 ABC_NrtD_SsuB_transpor 99.5 1.9E-14 4E-19 124.5 4.8 132 21-167 18-168 (220)
81 COG1134 TagH ABC-type polysacc 99.5 2.2E-14 4.7E-19 121.3 4.8 134 21-169 41-186 (249)
82 COG0411 LivG ABC-type branched 99.5 3.3E-15 7.1E-20 126.1 -0.1 138 12-164 8-183 (250)
83 PRK11629 lolD lipoprotein tran 99.5 1.9E-14 4.2E-19 125.5 4.7 124 44-167 31-182 (233)
84 cd03265 ABC_DrrA DrrA is the A 99.5 2.4E-14 5.3E-19 123.8 5.0 138 15-167 7-168 (220)
85 COG4619 ABC-type uncharacteriz 99.5 9.5E-14 2.1E-18 110.3 7.8 132 19-166 15-169 (223)
86 COG0410 LivF ABC-type branched 99.5 2.5E-14 5.4E-19 119.8 4.7 141 13-168 8-174 (237)
87 PRK09452 potA putrescine/sperm 99.5 2.8E-14 6E-19 132.1 5.5 140 14-168 20-182 (375)
88 PRK11000 maltose/maltodextrin 99.5 2.8E-14 6E-19 132.4 5.5 139 14-167 9-170 (369)
89 TIGR01186 proV glycine betaine 99.5 3.1E-14 6.6E-19 131.1 5.7 135 17-166 2-165 (363)
90 cd03263 ABC_subfamily_A The AB 99.5 2.8E-14 6.1E-19 123.4 4.8 137 16-167 8-170 (220)
91 PRK10584 putative ABC transpor 99.5 2.3E-14 5.1E-19 124.6 4.2 131 22-167 25-183 (228)
92 cd03269 ABC_putative_ATPase Th 99.5 3.1E-14 6.7E-19 122.2 4.9 137 16-167 8-165 (210)
93 TIGR01091 upp uracil phosphori 99.5 3.9E-14 8.4E-19 120.6 5.4 76 261-338 2-78 (207)
94 COG4525 TauB ABC-type taurine 99.5 6.9E-14 1.5E-18 113.8 6.3 123 44-166 27-168 (259)
95 TIGR02314 ABC_MetN D-methionin 99.5 3.9E-14 8.4E-19 129.6 5.3 132 21-167 19-177 (343)
96 COG0283 Cmk Cytidylate kinase 99.5 3.9E-14 8.4E-19 117.5 4.8 186 48-250 4-218 (222)
97 TIGR02673 FtsE cell division A 99.5 3.7E-14 8E-19 122.1 4.9 133 21-168 16-175 (214)
98 cd03218 ABC_YhbG The ABC trans 99.5 5E-14 1.1E-18 122.9 5.5 138 15-167 7-170 (232)
99 cd03297 ABC_ModC_molybdenum_tr 99.5 4.4E-14 9.6E-19 121.6 5.1 139 10-167 2-168 (214)
100 TIGR01166 cbiO cobalt transpor 99.5 4.4E-14 9.6E-19 119.3 4.9 132 21-167 6-164 (190)
101 cd03226 ABC_cobalt_CbiO_domain 99.5 5.7E-14 1.2E-18 120.1 5.6 135 15-168 6-164 (205)
102 TIGR03608 L_ocin_972_ABC putat 99.5 4.7E-14 1E-18 120.7 5.0 137 16-167 6-171 (206)
103 cd03296 ABC_CysA_sulfate_impor 99.5 5.5E-14 1.2E-18 123.1 5.6 138 15-167 9-173 (239)
104 KOG0058 Peptide exporter, ABC 99.5 5.6E-14 1.2E-18 134.8 5.9 176 19-229 464-674 (716)
105 COG1122 CbiO ABC-type cobalt t 99.5 1.2E-13 2.7E-18 119.2 7.5 124 44-167 26-175 (235)
106 cd03294 ABC_Pro_Gly_Bertaine T 99.5 5.1E-14 1.1E-18 125.4 5.3 140 13-167 29-197 (269)
107 PRK11153 metN DL-methionine tr 99.5 4.8E-14 1E-18 129.7 5.2 132 21-167 19-177 (343)
108 cd03258 ABC_MetN_methionine_tr 99.5 5.8E-14 1.3E-18 122.5 5.3 132 21-167 19-177 (233)
109 PRK11176 lipid transporter ATP 99.5 5.2E-14 1.1E-18 139.0 5.6 142 20-166 341-516 (582)
110 PRK10851 sulfate/thiosulfate t 99.5 6.1E-14 1.3E-18 129.1 5.6 139 14-167 8-173 (353)
111 PRK11248 tauB taurine transpor 99.5 5.7E-14 1.2E-18 124.1 5.2 138 15-167 8-165 (255)
112 PRK11607 potG putrescine trans 99.5 5.8E-14 1.3E-18 130.2 5.4 138 15-167 26-186 (377)
113 cd03301 ABC_MalK_N The N-termi 99.5 5.7E-14 1.2E-18 120.9 5.0 137 16-167 8-167 (213)
114 PF14681 UPRTase: Uracil phosp 99.5 4.4E-14 9.5E-19 120.2 4.2 73 266-338 3-77 (207)
115 cd03292 ABC_FtsE_transporter F 99.5 4.3E-14 9.3E-19 121.7 4.1 138 15-167 7-173 (214)
116 PRK00129 upp uracil phosphorib 99.5 6.6E-14 1.4E-18 119.4 5.1 77 260-338 3-80 (209)
117 PRK13632 cbiO cobalt transport 99.5 5.3E-14 1.2E-18 125.5 4.7 124 44-167 31-179 (271)
118 KOG1017 Predicted uracil phosp 99.4 3E-14 6.5E-19 114.7 2.6 78 261-338 68-145 (267)
119 cd03235 ABC_Metallic_Cations A 99.4 7.4E-14 1.6E-18 120.2 5.3 138 15-167 6-169 (213)
120 cd03261 ABC_Org_Solvent_Resist 99.4 7.4E-14 1.6E-18 122.0 5.2 138 15-167 7-173 (235)
121 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 7.8E-14 1.7E-18 121.9 5.3 138 16-168 9-170 (236)
122 PRK13635 cbiO cobalt transport 99.4 6.6E-14 1.4E-18 125.3 4.9 125 44-168 29-178 (279)
123 cd03266 ABC_NatA_sodium_export 99.4 5.9E-14 1.3E-18 121.2 4.4 131 22-167 20-173 (218)
124 TIGR02211 LolD_lipo_ex lipopro 99.4 8.3E-14 1.8E-18 120.5 5.3 131 22-167 20-178 (221)
125 COG4604 CeuD ABC-type enteroch 99.4 2.9E-14 6.3E-19 116.2 2.0 136 13-163 6-168 (252)
126 cd03224 ABC_TM1139_LivF_branch 99.4 7.8E-14 1.7E-18 120.8 4.9 135 16-167 8-169 (222)
127 COG3840 ThiQ ABC-type thiamine 99.4 1E-13 2.2E-18 111.6 5.0 126 44-169 21-168 (231)
128 cd03219 ABC_Mj1267_LivG_branch 99.4 1.2E-13 2.6E-18 120.8 5.8 137 16-167 8-180 (236)
129 cd03295 ABC_OpuCA_Osmoprotecti 99.4 9.2E-14 2E-18 122.0 5.0 137 16-167 8-172 (242)
130 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 8.8E-14 1.9E-18 139.8 5.5 141 19-166 450-624 (686)
131 cd03264 ABC_drug_resistance_li 99.4 8.1E-14 1.8E-18 119.7 4.2 136 16-167 8-167 (211)
132 cd03298 ABC_ThiQ_thiamine_tran 99.4 1.6E-13 3.4E-18 117.9 5.9 124 44-167 20-165 (211)
133 PRK13648 cbiO cobalt transport 99.4 1.2E-13 2.6E-18 123.1 5.2 125 44-168 31-180 (269)
134 TIGR02868 CydC thiol reductant 99.4 6.5E-14 1.4E-18 136.7 3.6 140 19-165 333-505 (529)
135 COG4175 ProV ABC-type proline/ 99.4 1.8E-13 4E-18 119.2 5.9 149 20-184 41-230 (386)
136 cd03246 ABCC_Protease_Secretio 99.4 1.1E-13 2.4E-18 115.1 4.4 117 22-168 17-134 (173)
137 COG1129 MglA ABC-type sugar tr 99.4 7.6E-14 1.6E-18 130.7 3.8 175 11-228 11-216 (500)
138 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 7.6E-14 1.6E-18 140.8 4.0 143 19-167 476-652 (710)
139 PRK10070 glycine betaine trans 99.4 1.7E-13 3.6E-18 127.7 5.9 136 16-166 36-200 (400)
140 cd03268 ABC_BcrA_bacitracin_re 99.4 1.5E-13 3.2E-18 117.9 5.0 133 16-167 8-163 (208)
141 PRK10908 cell division protein 99.4 1.5E-13 3.2E-18 119.0 5.0 132 21-167 16-174 (222)
142 cd02020 CMPK Cytidine monophos 99.4 1.4E-12 3E-17 105.3 10.2 144 50-230 1-146 (147)
143 PRK10247 putative ABC transpor 99.4 2.6E-13 5.6E-18 117.7 6.2 136 15-167 14-174 (225)
144 TIGR03410 urea_trans_UrtE urea 99.4 1.5E-13 3.3E-18 119.6 4.8 135 15-167 7-168 (230)
145 TIGR02203 MsbA_lipidA lipid A 99.4 1.6E-13 3.5E-18 135.2 5.6 144 19-167 329-506 (571)
146 PRK13650 cbiO cobalt transport 99.4 1.2E-13 2.6E-18 123.6 4.3 131 22-167 22-177 (279)
147 cd03260 ABC_PstB_phosphate_tra 99.4 2.2E-13 4.7E-18 118.4 5.7 138 15-167 7-178 (227)
148 cd03256 ABC_PhnC_transporter A 99.4 2.1E-13 4.6E-18 119.6 5.7 138 15-167 7-181 (241)
149 cd03262 ABC_HisP_GlnQ_permease 99.4 1.9E-13 4.1E-18 117.6 5.2 138 15-167 7-172 (213)
150 PRK06762 hypothetical protein; 99.4 7.1E-12 1.5E-16 103.4 14.4 155 47-250 1-163 (166)
151 PRK13637 cbiO cobalt transport 99.4 1.9E-13 4.2E-18 122.8 5.4 133 21-168 21-182 (287)
152 TIGR02770 nickel_nikD nickel i 99.4 2.1E-13 4.5E-18 118.7 5.4 129 23-166 2-161 (230)
153 TIGR02857 CydD thiol reductant 99.4 1E-13 2.3E-18 135.3 3.9 142 19-166 319-494 (529)
154 PRK13640 cbiO cobalt transport 99.4 1.8E-13 3.9E-18 122.7 5.0 124 44-167 29-180 (282)
155 KOG2702 Predicted panthothenat 99.4 1.3E-12 2.8E-17 108.7 9.3 148 44-193 115-283 (323)
156 TIGR03415 ABC_choXWV_ATP choli 99.4 2.1E-13 4.5E-18 126.2 5.2 138 15-167 31-201 (382)
157 PRK13548 hmuV hemin importer A 99.4 2.8E-13 6E-18 120.0 5.7 138 15-167 9-177 (258)
158 PRK13538 cytochrome c biogenes 99.4 2.5E-13 5.5E-18 116.0 5.2 135 15-167 8-166 (204)
159 COG1117 PstB ABC-type phosphat 99.4 2.9E-13 6.3E-18 111.8 5.3 136 14-164 13-183 (253)
160 TIGR02315 ABC_phnC phosphonate 99.4 3.2E-13 6.9E-18 118.6 5.9 138 15-167 8-182 (243)
161 PRK13636 cbiO cobalt transport 99.4 2E-13 4.4E-18 122.4 4.7 124 44-167 28-178 (283)
162 TIGR03375 type_I_sec_LssB type 99.4 1.2E-13 2.7E-18 138.9 3.4 143 19-167 462-638 (694)
163 PRK11160 cysteine/glutathione 99.4 2.4E-13 5.3E-18 133.7 5.4 143 19-167 337-512 (574)
164 cd03267 ABC_NatA_like Similar 99.4 2.9E-13 6.3E-18 118.3 5.2 136 17-167 30-190 (236)
165 cd03233 ABC_PDR_domain1 The pl 99.4 1.6E-13 3.4E-18 117.0 3.4 146 21-168 4-156 (202)
166 TIGR00958 3a01208 Conjugate Tr 99.4 1.9E-13 4.2E-18 137.5 4.4 141 19-165 477-652 (711)
167 TIGR02142 modC_ABC molybdenum 99.4 3.5E-13 7.7E-18 124.5 5.8 136 14-167 5-168 (354)
168 cd03257 ABC_NikE_OppD_transpor 99.4 4.4E-13 9.5E-18 116.6 6.1 131 22-167 20-182 (228)
169 PRK13647 cbiO cobalt transport 99.4 2.4E-13 5.2E-18 121.4 4.6 133 21-168 19-176 (274)
170 cd03244 ABCC_MRP_domain2 Domai 99.4 3.5E-13 7.7E-18 116.6 5.2 117 44-167 26-176 (221)
171 cd03231 ABC_CcmA_heme_exporter 99.4 4.7E-13 1E-17 114.0 5.8 132 15-167 7-162 (201)
172 PRK11247 ssuB aliphatic sulfon 99.4 5E-13 1.1E-17 118.0 6.1 118 44-167 34-170 (257)
173 cd03228 ABCC_MRP_Like The MRP 99.4 3E-13 6.4E-18 112.3 4.4 117 21-167 16-133 (171)
174 PRK10575 iron-hydroxamate tran 99.4 3.5E-13 7.6E-18 119.8 5.2 124 44-167 33-184 (265)
175 PRK13652 cbiO cobalt transport 99.4 3.1E-13 6.7E-18 120.9 4.9 139 15-168 10-175 (277)
176 PRK13643 cbiO cobalt transport 99.4 3.5E-13 7.5E-18 121.2 5.1 132 22-168 21-182 (288)
177 TIGR00968 3a0106s01 sulfate AB 99.4 3.5E-13 7.5E-18 117.9 5.0 138 15-167 7-167 (237)
178 PRK13634 cbiO cobalt transport 99.4 2.9E-13 6.4E-18 121.8 4.6 125 44-168 29-183 (290)
179 cd03245 ABCC_bacteriocin_expor 99.4 3.4E-13 7.4E-18 116.6 4.9 125 22-167 19-177 (220)
180 PRK11831 putative ABC transpor 99.4 3.4E-13 7.4E-18 120.1 5.0 138 15-167 14-180 (269)
181 PRK10895 lipopolysaccharide AB 99.4 4.5E-13 9.7E-18 117.5 5.5 138 15-167 10-174 (241)
182 TIGR01277 thiQ thiamine ABC tr 99.4 5.2E-13 1.1E-17 114.9 5.8 124 44-167 20-165 (213)
183 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 4.9E-13 1.1E-17 115.9 5.6 138 14-166 28-178 (224)
184 PRK11174 cysteine/glutathione 99.4 2.6E-13 5.6E-18 134.2 4.4 142 19-167 348-522 (588)
185 COG1428 Deoxynucleoside kinase 99.4 3.9E-13 8.4E-18 111.4 4.6 82 168-250 126-211 (216)
186 TIGR00972 3a0107s01c2 phosphat 99.4 5.6E-13 1.2E-17 117.3 6.0 138 15-167 8-181 (247)
187 cd03299 ABC_ModC_like Archeal 99.4 4E-13 8.7E-18 117.3 4.9 138 15-167 7-166 (235)
188 PRK09493 glnQ glutamine ABC tr 99.4 4.1E-13 8.9E-18 117.7 5.0 138 15-167 8-173 (240)
189 COG4240 Predicted kinase [Gene 99.4 3.2E-12 6.9E-17 106.3 9.8 119 44-164 46-178 (300)
190 PRK11264 putative amino-acid A 99.4 6.5E-13 1.4E-17 117.2 6.1 138 15-167 10-181 (250)
191 PRK14250 phosphate ABC transpo 99.4 5.6E-13 1.2E-17 116.8 5.7 133 16-167 11-168 (241)
192 PRK13657 cyclic beta-1,2-gluca 99.4 3E-13 6.6E-18 133.6 4.5 141 20-167 334-508 (588)
193 PRK11144 modC molybdate transp 99.4 4E-13 8.6E-18 124.0 4.9 133 13-167 5-165 (352)
194 PRK11300 livG leucine/isoleuci 99.4 4E-13 8.8E-18 118.8 4.8 140 13-167 10-190 (255)
195 PRK01184 hypothetical protein; 99.4 6.4E-12 1.4E-16 105.5 11.7 160 48-233 1-164 (184)
196 cd03300 ABC_PotA_N PotA is an 99.4 5.8E-13 1.3E-17 116.1 5.6 138 16-168 8-168 (232)
197 TIGR03411 urea_trans_UrtD urea 99.4 7.2E-13 1.6E-17 116.3 6.2 138 15-167 9-180 (242)
198 PRK10418 nikD nickel transport 99.4 7E-13 1.5E-17 117.2 6.1 136 15-167 11-177 (254)
199 PRK10771 thiQ thiamine transpo 99.4 5.9E-13 1.3E-17 116.1 5.6 123 44-166 21-165 (232)
200 PRK14242 phosphate transporter 99.4 4.4E-13 9.6E-18 118.4 4.8 138 15-167 13-186 (253)
201 PRK11231 fecE iron-dicitrate t 99.4 5.9E-13 1.3E-17 117.8 5.6 138 15-167 9-175 (255)
202 PRK11022 dppD dipeptide transp 99.4 5.9E-13 1.3E-17 121.5 5.7 130 22-167 22-190 (326)
203 PRK13641 cbiO cobalt transport 99.4 4.2E-13 9.1E-18 120.6 4.6 131 22-167 22-182 (287)
204 PRK13649 cbiO cobalt transport 99.4 4.6E-13 9.9E-18 120.1 4.9 125 44-168 29-183 (280)
205 TIGR01189 ccmA heme ABC export 99.4 5.9E-13 1.3E-17 113.2 5.2 133 15-166 7-163 (198)
206 cd03234 ABCG_White The White s 99.4 7E-13 1.5E-17 115.1 5.8 125 44-168 29-181 (226)
207 PRK14247 phosphate ABC transpo 99.4 8E-13 1.7E-17 116.6 6.2 138 15-167 10-183 (250)
208 PRK13638 cbiO cobalt transport 99.4 4E-13 8.6E-18 119.9 4.3 138 15-167 8-173 (271)
209 PRK13642 cbiO cobalt transport 99.4 4.9E-13 1.1E-17 119.6 4.6 124 44-167 29-177 (277)
210 COG4988 CydD ABC-type transpor 99.4 3.3E-13 7.2E-18 126.9 3.6 137 23-166 323-492 (559)
211 TIGR01184 ntrCD nitrate transp 99.4 6.1E-13 1.3E-17 115.7 5.0 124 44-167 7-151 (230)
212 cd03229 ABC_Class3 This class 99.4 2.5E-13 5.4E-18 113.5 2.4 126 16-167 8-137 (178)
213 PRK13644 cbiO cobalt transport 99.4 4.4E-13 9.6E-18 119.7 4.1 131 22-167 17-173 (274)
214 PRK13633 cobalt transporter AT 99.4 5.7E-13 1.2E-17 119.4 4.8 125 44-168 32-182 (280)
215 PRK13549 xylose transporter AT 99.4 9.1E-13 2E-17 127.8 6.5 137 13-164 10-177 (506)
216 PRK06217 hypothetical protein; 99.4 1.6E-11 3.4E-16 103.1 13.1 106 49-192 2-107 (183)
217 PRK13540 cytochrome c biogenes 99.4 1.1E-12 2.3E-17 111.8 6.1 132 16-167 9-164 (200)
218 PRK13651 cobalt transporter AT 99.4 6.4E-13 1.4E-17 120.2 4.9 125 44-168 29-203 (305)
219 TIGR01842 type_I_sec_PrtD type 99.3 6E-13 1.3E-17 130.3 4.9 143 19-167 315-491 (544)
220 TIGR03740 galliderm_ABC gallid 99.3 8.8E-13 1.9E-17 114.3 5.3 133 16-167 8-161 (223)
221 cd03289 ABCC_CFTR2 The CFTR su 99.3 7.9E-13 1.7E-17 117.7 5.1 139 22-167 4-175 (275)
222 cd03223 ABCD_peroxisomal_ALDP 99.3 7.6E-13 1.7E-17 109.2 4.7 112 22-167 16-128 (166)
223 PRK10253 iron-enterobactin tra 99.3 8.6E-13 1.9E-17 117.3 5.2 138 15-167 14-180 (265)
224 cd03247 ABCC_cytochrome_bd The 99.3 4.1E-13 8.8E-18 112.2 2.9 118 22-167 17-135 (178)
225 PRK10762 D-ribose transporter 99.3 1.1E-12 2.5E-17 127.0 6.4 137 13-164 9-175 (501)
226 PRK10744 pstB phosphate transp 99.3 1.1E-12 2.3E-17 116.4 5.7 124 44-167 35-193 (260)
227 TIGR03873 F420-0_ABC_ATP propo 99.3 9.4E-13 2E-17 116.5 5.3 138 16-168 9-175 (256)
228 TIGR01193 bacteriocin_ABC ABC- 99.3 4.3E-13 9.4E-18 135.2 3.6 142 19-166 472-647 (708)
229 PRK15079 oligopeptide ABC tran 99.3 8.3E-13 1.8E-17 120.6 5.1 131 22-167 36-198 (331)
230 PRK14241 phosphate transporter 99.3 1E-12 2.2E-17 116.4 5.5 140 13-167 9-185 (258)
231 PRK11308 dppF dipeptide transp 99.3 1.1E-12 2.3E-17 119.8 5.7 131 22-167 30-191 (327)
232 KOG0055 Multidrug/pheromone ex 99.3 8.7E-13 1.9E-17 133.7 5.5 180 15-229 982-1196(1228)
233 PRK11614 livF leucine/isoleuci 99.3 6.9E-13 1.5E-17 116.0 4.2 136 15-167 12-174 (237)
234 cd03230 ABC_DR_subfamily_A Thi 99.3 5.6E-13 1.2E-17 110.8 3.4 117 22-167 15-132 (173)
235 PRK14268 phosphate ABC transpo 99.3 5.8E-13 1.3E-17 118.0 3.7 124 44-167 34-191 (258)
236 PRK10790 putative multidrug tr 99.3 5.2E-13 1.1E-17 132.1 3.7 140 19-166 339-512 (592)
237 TIGR02204 MsbA_rel ABC transpo 99.3 8.7E-13 1.9E-17 130.2 5.3 141 20-166 337-512 (576)
238 PRK14263 phosphate ABC transpo 99.3 7.4E-13 1.6E-17 117.4 4.3 139 14-168 14-187 (261)
239 TIGR02769 nickel_nikE nickel i 99.3 1.2E-12 2.7E-17 116.3 5.7 131 21-166 25-186 (265)
240 TIGR02324 CP_lyasePhnL phospho 99.3 1.3E-12 2.8E-17 113.3 5.7 131 22-167 23-186 (224)
241 KOG0055 Multidrug/pheromone ex 99.3 4.3E-13 9.3E-18 135.9 3.0 169 17-207 347-550 (1228)
242 PRK13539 cytochrome c biogenes 99.3 1.1E-12 2.3E-17 112.4 5.0 134 15-167 9-164 (207)
243 PRK09544 znuC high-affinity zi 99.3 1.2E-12 2.7E-17 115.2 5.3 131 15-167 11-157 (251)
244 PRK11124 artP arginine transpo 99.3 1.1E-12 2.4E-17 115.1 5.0 138 15-167 9-178 (242)
245 PLN03130 ABC transporter C fam 99.3 4.4E-13 9.5E-18 144.4 2.9 139 19-164 1236-1408(1622)
246 PRK15112 antimicrobial peptide 99.3 1.1E-12 2.4E-17 116.7 5.0 131 22-167 28-186 (267)
247 cd03252 ABCC_Hemolysin The ABC 99.3 7.6E-13 1.6E-17 115.8 3.8 126 21-167 16-175 (237)
248 PRK14259 phosphate ABC transpo 99.3 1.7E-12 3.8E-17 115.6 6.2 123 44-167 35-191 (269)
249 PRK10619 histidine/lysine/argi 99.3 1.2E-12 2.6E-17 115.9 5.1 138 15-167 12-189 (257)
250 PRK13639 cbiO cobalt transport 99.3 1E-12 2.2E-17 117.4 4.6 132 22-168 17-175 (275)
251 PRK13541 cytochrome c biogenes 99.3 1.3E-12 2.9E-17 110.7 5.0 119 44-167 22-160 (195)
252 PRK14269 phosphate ABC transpo 99.3 1.9E-12 4E-17 113.9 6.0 138 15-167 9-179 (246)
253 PRK10789 putative multidrug tr 99.3 1.4E-12 3E-17 128.3 5.6 142 20-167 313-488 (569)
254 cd03369 ABCC_NFT1 Domain 2 of 99.3 2.1E-12 4.6E-17 110.5 6.1 112 44-167 30-162 (207)
255 PRK13645 cbiO cobalt transport 99.3 1E-12 2.2E-17 118.3 4.2 125 44-168 33-188 (289)
256 PRK13646 cbiO cobalt transport 99.3 1.1E-12 2.3E-17 118.0 4.3 125 44-168 29-183 (286)
257 cd03215 ABC_Carb_Monos_II This 99.3 1.2E-12 2.6E-17 109.7 4.4 123 22-168 15-142 (182)
258 PRK14235 phosphate transporter 99.3 2.3E-12 5E-17 114.7 6.4 144 22-167 21-200 (267)
259 cd03254 ABCC_Glucan_exporter_l 99.3 1.2E-12 2.6E-17 113.9 4.4 125 22-167 18-176 (229)
260 PRK13631 cbiO cobalt transport 99.3 1.8E-12 3.8E-17 118.0 5.7 148 21-168 22-214 (320)
261 COG3845 ABC-type uncharacteriz 99.3 9.3E-13 2E-17 121.3 3.8 136 13-164 9-174 (501)
262 PRK14267 phosphate ABC transpo 99.3 1.8E-12 3.9E-17 114.6 5.5 138 15-167 11-186 (253)
263 PRK15439 autoinducer 2 ABC tra 99.3 1.8E-12 3.9E-17 125.8 6.0 132 14-164 17-174 (510)
264 PLN03232 ABC transporter C fam 99.3 5.1E-13 1.1E-17 143.6 2.4 166 19-207 1233-1432(1495)
265 cd03237 ABC_RNaseL_inhibitor_d 99.3 2.3E-12 5E-17 113.0 6.1 134 15-167 7-152 (246)
266 TIGR00017 cmk cytidylate kinas 99.3 2.5E-12 5.5E-17 110.3 6.2 188 48-247 2-215 (217)
267 PRK14273 phosphate ABC transpo 99.3 1.9E-12 4E-17 114.5 5.5 124 44-167 29-187 (254)
268 PRK15056 manganese/iron transp 99.3 1.4E-12 3E-17 116.4 4.7 138 15-167 13-179 (272)
269 PRK14270 phosphate ABC transpo 99.3 2.4E-12 5.1E-17 113.6 6.1 138 15-167 11-184 (251)
270 TIGR03005 ectoine_ehuA ectoine 99.3 1.6E-12 3.5E-17 114.7 5.1 136 16-166 8-182 (252)
271 PRK08118 topology modulation p 99.3 3.4E-11 7.3E-16 99.3 12.6 100 49-191 2-101 (167)
272 COG4181 Predicted ABC-type tra 99.3 9.5E-12 2.1E-16 99.4 8.8 127 23-164 26-180 (228)
273 PRK09984 phosphonate/organopho 99.3 2.1E-12 4.5E-17 114.7 5.8 138 15-167 11-189 (262)
274 TIGR01257 rim_protein retinal- 99.3 5.2E-13 1.1E-17 143.8 2.2 125 44-168 1961-2108(2272)
275 COG4608 AppF ABC-type oligopep 99.3 2E-12 4.4E-17 111.5 5.4 114 21-165 27-144 (268)
276 PRK14258 phosphate ABC transpo 99.3 1.4E-12 3E-17 115.7 4.6 138 15-167 14-187 (261)
277 PRK10982 galactose/methyl gala 99.3 2.1E-12 4.4E-17 125.0 6.1 135 15-164 5-168 (491)
278 PRK04182 cytidylate kinase; Pr 99.3 3.8E-12 8.2E-17 106.4 6.9 167 50-249 2-171 (180)
279 PRK15134 microcin C ABC transp 99.3 1.3E-12 2.9E-17 127.4 4.7 128 22-164 24-190 (529)
280 PRK13543 cytochrome c biogenes 99.3 2.3E-12 5.1E-17 110.9 5.7 135 15-167 18-174 (214)
281 TIGR01846 type_I_sec_HlyB type 99.3 9.9E-13 2.1E-17 132.3 3.7 143 19-167 454-630 (694)
282 PRK14274 phosphate ABC transpo 99.3 2.1E-12 4.5E-17 114.5 5.3 124 44-167 34-192 (259)
283 cd03250 ABCC_MRP_domain1 Domai 99.3 2.2E-12 4.7E-17 110.3 5.1 122 22-165 20-162 (204)
284 PRK10522 multidrug transporter 99.3 2.1E-12 4.6E-17 126.4 5.7 146 19-166 321-485 (547)
285 COG0703 AroK Shikimate kinase 99.3 9.7E-12 2.1E-16 100.8 8.4 160 49-247 3-168 (172)
286 cd03216 ABC_Carb_Monos_I This 99.3 8.7E-13 1.9E-17 108.5 2.4 110 16-167 8-119 (163)
287 PRK09700 D-allose transporter 99.3 2.5E-12 5.3E-17 125.0 6.0 137 13-164 10-179 (510)
288 PRK10419 nikE nickel transport 99.3 2.8E-12 6E-17 114.2 5.8 130 22-166 27-187 (268)
289 TIGR01978 sufC FeS assembly AT 99.3 2E-12 4.4E-17 113.5 4.8 138 15-167 7-181 (243)
290 COG1132 MdlB ABC-type multidru 99.3 9.4E-13 2E-17 129.6 3.0 140 19-165 327-500 (567)
291 TIGR02173 cyt_kin_arch cytidyl 99.3 5.9E-12 1.3E-16 104.3 7.4 165 49-247 1-168 (171)
292 PRK05057 aroK shikimate kinase 99.3 4.2E-11 9E-16 99.3 12.4 159 48-248 4-168 (172)
293 PRK14254 phosphate ABC transpo 99.3 3E-12 6.6E-17 114.9 6.0 123 44-167 61-217 (285)
294 PRK00131 aroK shikimate kinase 99.3 2.9E-11 6.2E-16 100.5 11.4 38 46-86 2-39 (175)
295 cd03214 ABC_Iron-Siderophores_ 99.3 1.2E-12 2.5E-17 109.6 3.0 124 16-167 7-134 (180)
296 cd03213 ABCG_EPDR ABCG transpo 99.3 1.4E-12 3.1E-17 110.4 3.5 115 44-167 31-148 (194)
297 PRK14256 phosphate ABC transpo 99.3 3.7E-12 8.1E-17 112.4 6.3 138 15-167 11-185 (252)
298 TIGR02982 heterocyst_DevA ABC 99.3 2E-12 4.4E-17 111.8 4.5 131 22-167 20-178 (220)
299 PRK11701 phnK phosphonate C-P 99.3 1.8E-12 4E-17 114.8 4.3 137 15-167 13-188 (258)
300 TIGR02633 xylG D-xylose ABC tr 99.3 3E-12 6.4E-17 124.2 6.1 135 15-164 8-175 (500)
301 PRK09473 oppD oligopeptide tra 99.3 2.4E-12 5.3E-17 117.6 5.2 131 22-168 31-199 (330)
302 cd03248 ABCC_TAP TAP, the Tran 99.3 1.5E-12 3.2E-17 113.1 3.5 144 23-167 14-187 (226)
303 PRK14240 phosphate transporter 99.3 3.3E-12 7.1E-17 112.7 5.8 138 15-167 10-183 (250)
304 PRK10078 ribose 1,5-bisphospho 99.3 7.3E-11 1.6E-15 99.3 13.7 167 48-250 2-175 (186)
305 TIGR03269 met_CoM_red_A2 methy 99.3 3E-12 6.6E-17 124.6 6.0 136 15-165 7-203 (520)
306 COG4148 ModC ABC-type molybdat 99.3 7.1E-12 1.5E-16 107.6 7.4 127 15-163 7-161 (352)
307 TIGR00954 3a01203 Peroxysomal 99.3 3.5E-12 7.6E-17 127.1 6.5 147 19-167 450-619 (659)
308 PRK14262 phosphate ABC transpo 99.3 3.4E-12 7.3E-17 112.6 5.7 137 16-167 11-183 (250)
309 PTZ00265 multidrug resistance 99.3 1.3E-12 2.7E-17 139.7 3.4 141 19-165 1164-1393(1466)
310 COG4987 CydC ABC-type transpor 99.3 4.9E-12 1.1E-16 117.6 6.8 144 20-165 336-509 (573)
311 PRK03695 vitamin B12-transport 99.3 3.8E-12 8.2E-17 112.1 5.8 130 22-167 11-170 (248)
312 PRK14237 phosphate transporter 99.3 3.5E-12 7.7E-17 113.5 5.7 124 44-167 42-200 (267)
313 PRK13546 teichoic acids export 99.3 3.1E-12 6.8E-17 113.4 5.3 131 21-166 38-179 (264)
314 COG0444 DppD ABC-type dipeptid 99.3 2E-12 4.2E-17 114.0 3.9 130 21-166 19-189 (316)
315 PRK05541 adenylylsulfate kinas 99.3 2.6E-11 5.6E-16 101.1 10.6 42 44-85 3-46 (176)
316 PRK14248 phosphate ABC transpo 99.3 4E-12 8.8E-17 113.2 6.0 125 43-167 42-201 (268)
317 cd03251 ABCC_MsbA MsbA is an e 99.3 1.8E-12 3.9E-17 113.1 3.7 131 21-167 16-175 (234)
318 PRK14251 phosphate ABC transpo 99.3 3.7E-12 7.9E-17 112.4 5.6 138 15-167 11-184 (251)
319 PRK14253 phosphate ABC transpo 99.3 4.6E-12 9.9E-17 111.7 6.1 138 15-167 10-182 (249)
320 PRK13409 putative ATPase RIL; 99.3 1.3E-12 2.9E-17 127.9 3.0 138 22-167 342-490 (590)
321 PRK13949 shikimate kinase; Pro 99.3 8.7E-12 1.9E-16 103.0 7.3 108 49-188 2-113 (169)
322 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 1.7E-12 3.7E-17 113.6 3.3 126 22-168 18-177 (238)
323 PRK15177 Vi polysaccharide exp 99.3 1.9E-12 4.2E-17 111.2 3.4 126 22-166 2-140 (213)
324 PRK13549 xylose transporter AT 99.3 2.1E-12 4.5E-17 125.3 4.0 147 21-167 260-442 (506)
325 PRK14271 phosphate ABC transpo 99.3 4.3E-12 9.4E-17 113.4 5.7 124 44-167 43-200 (276)
326 PRK14245 phosphate ABC transpo 99.3 5.3E-12 1.1E-16 111.3 6.2 139 15-168 10-184 (250)
327 PRK14239 phosphate transporter 99.3 3.3E-12 7.2E-17 112.8 4.9 138 15-167 12-185 (252)
328 KOG0057 Mitochondrial Fe/S clu 99.3 5E-12 1.1E-16 117.7 6.1 168 18-207 349-548 (591)
329 PRK13547 hmuV hemin importer A 99.3 4.2E-12 9E-17 113.1 5.4 138 15-167 8-191 (272)
330 PLN03211 ABC transporter G-25; 99.3 7.1E-12 1.5E-16 124.4 7.3 135 15-165 75-241 (659)
331 PRK14272 phosphate ABC transpo 99.3 6E-12 1.3E-16 111.1 6.1 138 15-167 11-185 (252)
332 PRK10938 putative molybdenum t 99.3 4.9E-12 1.1E-16 122.3 6.0 134 15-164 10-169 (490)
333 PRK13545 tagH teichoic acids e 99.3 4.4E-12 9.6E-17 120.2 5.3 129 38-166 40-179 (549)
334 PRK14260 phosphate ABC transpo 99.3 5.7E-12 1.2E-16 111.7 5.7 138 15-167 14-187 (259)
335 KOG0056 Heavy metal exporter H 99.3 2.3E-12 5.1E-17 118.2 3.3 171 15-207 532-735 (790)
336 cd03232 ABC_PDR_domain2 The pl 99.3 2.9E-12 6.4E-17 108.3 3.6 114 44-167 29-145 (192)
337 COG1123 ATPase components of v 99.3 7.1E-12 1.5E-16 118.4 6.4 128 22-166 306-465 (539)
338 cd03217 ABC_FeS_Assembly ABC-t 99.3 3.1E-12 6.7E-17 108.9 3.6 129 16-167 8-141 (200)
339 TIGR01192 chvA glucan exporter 99.3 3.4E-12 7.4E-17 125.8 4.4 141 20-167 334-508 (585)
340 PRK14261 phosphate ABC transpo 99.3 7.1E-12 1.5E-16 110.7 5.9 138 15-167 13-186 (253)
341 TIGR01194 cyc_pep_trnsptr cycl 99.3 6.1E-12 1.3E-16 123.3 6.0 148 19-167 336-507 (555)
342 PRK09700 D-allose transporter 99.3 7.7E-12 1.7E-16 121.5 6.7 123 44-166 285-445 (510)
343 PRK14265 phosphate ABC transpo 99.3 5.5E-12 1.2E-16 112.6 5.2 123 44-167 42-198 (274)
344 PRK14275 phosphate ABC transpo 99.3 6E-12 1.3E-16 113.1 5.4 128 40-167 57-219 (286)
345 COG4136 ABC-type uncharacteriz 99.3 5.1E-12 1.1E-16 98.7 4.2 121 44-169 24-173 (213)
346 PRK14249 phosphate ABC transpo 99.2 8.6E-12 1.9E-16 110.1 6.2 138 15-167 11-184 (251)
347 PRK14244 phosphate ABC transpo 99.2 7.1E-12 1.5E-16 110.6 5.6 136 16-166 13-185 (251)
348 PRK10261 glutathione transport 99.2 5.9E-12 1.3E-16 124.8 5.7 122 44-165 38-203 (623)
349 PRK11288 araG L-arabinose tran 99.2 6.2E-12 1.3E-16 121.9 5.6 136 14-164 10-174 (501)
350 TIGR02323 CP_lyasePhnK phospho 99.2 6.6E-12 1.4E-16 110.9 5.3 138 15-167 10-185 (253)
351 TIGR00957 MRP_assoc_pro multi 99.2 1.7E-12 3.7E-17 139.8 1.9 166 19-207 1283-1482(1522)
352 PRK00023 cmk cytidylate kinase 99.2 3.3E-11 7.1E-16 104.2 9.5 182 48-248 4-218 (225)
353 PRK10261 glutathione transport 99.2 6.1E-12 1.3E-16 124.7 5.6 147 21-167 314-500 (623)
354 PTZ00243 ABC transporter; Prov 99.2 3E-12 6.5E-17 137.8 3.6 141 19-166 1307-1482(1560)
355 PRK11819 putative ABC transpor 99.2 8E-12 1.7E-16 122.5 6.3 141 23-167 327-482 (556)
356 PRK14257 phosphate ABC transpo 99.2 6.9E-12 1.5E-16 114.5 5.4 149 20-168 80-263 (329)
357 PRK15093 antimicrobial peptide 99.2 4.4E-12 9.4E-17 116.1 4.1 131 22-167 22-195 (330)
358 PRK14236 phosphate transporter 99.2 9E-12 1.9E-16 111.2 6.0 127 41-167 44-205 (272)
359 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 8E-12 1.7E-16 122.4 6.2 143 21-167 323-480 (552)
360 PRK14246 phosphate ABC transpo 99.2 9.1E-12 2E-16 110.2 5.9 139 13-166 15-189 (257)
361 PRK07261 topology modulation p 99.2 2.1E-11 4.5E-16 101.0 7.6 105 50-197 2-107 (171)
362 PRK14238 phosphate transporter 99.2 7.8E-12 1.7E-16 111.5 5.3 145 21-167 25-204 (271)
363 PRK15064 ABC transporter ATP-b 99.2 1E-11 2.3E-16 121.1 6.4 140 21-167 320-475 (530)
364 COG4674 Uncharacterized ABC-ty 99.2 1.1E-11 2.4E-16 101.1 5.3 135 12-161 9-178 (249)
365 PRK14255 phosphate ABC transpo 99.2 1.1E-11 2.3E-16 109.5 5.8 138 15-167 12-185 (252)
366 PRK14243 phosphate transporter 99.2 1.4E-11 3.1E-16 109.4 6.3 123 44-167 32-188 (264)
367 TIGR03771 anch_rpt_ABC anchore 99.2 1.9E-11 4.1E-16 105.9 7.0 124 44-167 2-150 (223)
368 cd03288 ABCC_SUR2 The SUR doma 99.2 9.3E-12 2E-16 110.2 4.9 141 19-166 18-192 (257)
369 cd03253 ABCC_ATM1_transporter 99.2 5.4E-12 1.2E-16 110.3 3.4 129 22-166 16-173 (236)
370 PRK14737 gmk guanylate kinase; 99.2 1.3E-10 2.7E-15 97.5 11.5 172 46-244 2-181 (186)
371 cd03290 ABCC_SUR1_N The SUR do 99.2 1.2E-11 2.7E-16 106.7 5.4 123 22-166 16-176 (218)
372 COG4133 CcmA ABC-type transpor 99.2 6.3E-12 1.4E-16 102.0 3.3 131 18-166 12-166 (209)
373 PRK15134 microcin C ABC transp 99.2 1.1E-11 2.4E-16 121.0 5.6 147 21-167 276-462 (529)
374 PF00005 ABC_tran: ABC transpo 99.2 7.4E-13 1.6E-17 105.6 -2.2 121 23-159 1-137 (137)
375 PRK11147 ABC transporter ATPas 99.2 1.4E-11 2.9E-16 122.6 6.2 141 22-166 321-476 (635)
376 PRK13946 shikimate kinase; Pro 99.2 1.6E-10 3.4E-15 97.0 11.5 163 47-249 9-178 (184)
377 PRK15439 autoinducer 2 ABC tra 99.2 1.6E-11 3.4E-16 119.3 6.2 124 44-167 285-440 (510)
378 PRK04040 adenylate kinase; Pro 99.2 8.3E-11 1.8E-15 98.7 9.8 173 48-244 2-186 (188)
379 PRK11860 bifunctional 3-phosph 99.2 3.1E-11 6.7E-16 120.2 8.4 186 46-250 440-654 (661)
380 PRK00625 shikimate kinase; Pro 99.2 1.4E-10 3E-15 95.9 10.9 138 50-231 2-150 (173)
381 cd03222 ABC_RNaseL_inhibitor T 99.2 5.1E-12 1.1E-16 104.8 2.3 87 44-167 21-108 (177)
382 cd03291 ABCC_CFTR1 The CFTR su 99.2 8.4E-12 1.8E-16 111.5 3.9 127 37-167 52-196 (282)
383 TIGR02633 xylG D-xylose ABC tr 99.2 1.5E-11 3.3E-16 119.2 6.0 127 40-166 278-439 (500)
384 TIGR01257 rim_protein retinal- 99.2 1.2E-11 2.6E-16 133.6 5.5 147 20-166 928-1097(2272)
385 PRK11288 araG L-arabinose tran 99.2 1.1E-11 2.5E-16 120.0 4.9 124 44-167 275-433 (501)
386 PRK10762 D-ribose transporter 99.2 1.4E-11 3.1E-16 119.4 5.5 124 44-167 274-432 (501)
387 COG4559 ABC-type hemin transpo 99.2 1.6E-11 3.5E-16 101.4 4.8 135 15-164 8-175 (259)
388 PRK15064 ABC transporter ATP-b 99.2 1.5E-11 3.2E-16 120.1 5.4 135 15-164 8-189 (530)
389 PRK14264 phosphate ABC transpo 99.2 2.1E-11 4.7E-16 110.5 6.1 144 22-167 47-237 (305)
390 COG4615 PvdE ABC-type sideroph 99.2 2.1E-11 4.6E-16 109.3 5.8 150 18-169 320-487 (546)
391 PRK08356 hypothetical protein; 99.2 3.5E-10 7.5E-15 95.9 12.9 128 48-191 5-137 (195)
392 COG1123 ATPase components of v 99.2 2.2E-11 4.8E-16 115.1 6.1 129 22-166 24-190 (539)
393 COG0194 Gmk Guanylate kinase [ 99.2 3.3E-10 7.2E-15 92.3 12.1 176 47-246 3-181 (191)
394 TIGR01360 aden_kin_iso1 adenyl 99.2 1.3E-10 2.8E-15 97.8 10.3 120 47-191 2-129 (188)
395 TIGR03269 met_CoM_red_A2 methy 99.2 1.8E-11 3.9E-16 119.3 5.7 147 21-168 280-465 (520)
396 PRK11819 putative ABC transpor 99.2 1.2E-11 2.6E-16 121.2 4.3 136 14-164 12-197 (556)
397 PRK09580 sufC cysteine desulfu 99.2 1.9E-11 4E-16 107.7 5.1 137 15-167 8-182 (248)
398 PRK13948 shikimate kinase; Pro 99.2 2.5E-10 5.3E-15 95.1 11.4 162 45-247 7-175 (182)
399 COG4598 HisP ABC-type histidin 99.2 9.1E-12 2E-16 100.3 2.7 140 14-168 12-190 (256)
400 TIGR01271 CFTR_protein cystic 99.2 1.9E-11 4.1E-16 131.5 5.9 140 19-165 1216-1388(1490)
401 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 2.3E-11 4.9E-16 119.3 6.0 135 15-164 11-195 (552)
402 PRK10938 putative molybdenum t 99.2 1.4E-11 3E-16 119.2 4.4 144 22-167 262-438 (490)
403 PLN03232 ABC transporter C fam 99.2 1.2E-11 2.6E-16 133.2 4.2 140 20-166 614-776 (1495)
404 PRK14252 phosphate ABC transpo 99.2 2.8E-11 6.1E-16 107.6 5.9 145 21-167 17-198 (265)
405 CHL00131 ycf16 sulfate ABC tra 99.2 2.9E-11 6.3E-16 106.8 6.0 138 15-167 14-188 (252)
406 COG4107 PhnK ABC-type phosphon 99.2 3.9E-11 8.5E-16 96.1 5.9 136 14-164 12-185 (258)
407 PRK14266 phosphate ABC transpo 99.2 3.2E-11 7E-16 106.3 6.0 138 15-167 10-183 (250)
408 PLN03130 ABC transporter C fam 99.2 2E-11 4.4E-16 131.7 5.5 146 19-166 613-776 (1622)
409 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 8.8E-12 1.9E-16 100.3 1.9 93 21-167 14-107 (144)
410 cd03238 ABC_UvrA The excision 99.2 3E-11 6.6E-16 100.1 4.9 113 20-167 8-126 (176)
411 COG4167 SapF ABC-type antimicr 99.2 5.5E-11 1.2E-15 96.1 6.2 129 23-166 29-185 (267)
412 PRK09518 bifunctional cytidyla 99.2 1.5E-10 3.2E-15 116.4 10.7 187 49-250 2-234 (712)
413 PRK10982 galactose/methyl gala 99.2 1.3E-11 2.9E-16 119.3 3.1 127 41-167 267-428 (491)
414 PTZ00265 multidrug resistance 99.2 1.8E-11 4E-16 130.8 4.2 56 19-74 381-437 (1466)
415 COG1119 ModF ABC-type molybden 99.1 6.5E-11 1.4E-15 100.3 6.2 123 44-166 53-207 (257)
416 PRK10636 putative ABC transpor 99.1 3.2E-11 6.9E-16 119.8 5.1 136 23-166 315-466 (638)
417 cd00227 CPT Chloramphenicol (C 99.1 9.9E-10 2.2E-14 91.4 13.3 39 48-87 2-40 (175)
418 PRK13947 shikimate kinase; Pro 99.1 4.9E-10 1.1E-14 92.9 11.3 36 50-88 3-38 (171)
419 PF13207 AAA_17: AAA domain; P 99.1 3.2E-11 7E-16 94.0 3.9 114 50-196 1-117 (121)
420 PRK10636 putative ABC transpor 99.1 3.6E-11 7.8E-16 119.4 5.3 137 13-164 6-183 (638)
421 TIGR02322 phosphon_PhnN phosph 99.1 1.2E-09 2.6E-14 91.2 13.3 43 147-190 88-132 (179)
422 COG4172 ABC-type uncharacteriz 99.1 8.9E-11 1.9E-15 105.7 6.7 131 21-166 301-462 (534)
423 PRK00698 tmk thymidylate kinas 99.1 1.5E-09 3.4E-14 92.6 13.3 28 47-74 2-29 (205)
424 cd00267 ABC_ATPase ABC (ATP-bi 99.1 4.4E-11 9.5E-16 97.8 3.5 102 22-166 14-116 (157)
425 PLN03073 ABC transporter F fam 99.1 8.7E-11 1.9E-15 117.5 6.0 140 21-166 509-663 (718)
426 cd03236 ABC_RNaseL_inhibitor_d 99.1 7.6E-11 1.6E-15 103.9 5.0 122 45-167 23-176 (255)
427 PRK11147 ABC transporter ATPas 99.1 1.7E-11 3.7E-16 121.9 1.0 136 14-164 9-190 (635)
428 PLN02200 adenylate kinase fami 99.1 2.8E-09 6E-14 92.7 14.4 122 45-190 40-167 (234)
429 TIGR00955 3a01204 The Eye Pigm 99.1 1.4E-10 2.9E-15 115.1 6.7 130 20-165 38-201 (617)
430 TIGR01313 therm_gnt_kin carboh 99.1 4.5E-09 9.8E-14 86.4 14.7 33 51-86 1-33 (163)
431 cd00464 SK Shikimate kinase (S 99.1 3.6E-10 7.8E-15 91.9 7.8 33 51-86 2-34 (154)
432 PRK10535 macrolide transporter 99.1 1.2E-10 2.6E-15 116.0 5.8 123 44-166 30-180 (648)
433 TIGR03263 guanyl_kin guanylate 99.1 1.1E-09 2.3E-14 91.7 10.6 26 48-73 1-26 (180)
434 TIGR00957 MRP_assoc_pro multi 99.1 1.1E-10 2.4E-15 126.0 5.6 144 20-165 636-795 (1522)
435 COG0488 Uup ATPase components 99.1 2E-10 4.4E-15 110.2 6.5 137 23-166 324-475 (530)
436 COG4618 ArpD ABC-type protease 99.1 1.7E-10 3.6E-15 106.8 5.5 143 20-163 334-505 (580)
437 KOG0061 Transporter, ABC super 99.1 1.8E-10 4E-15 113.3 6.3 120 44-164 52-204 (613)
438 COG0396 sufC Cysteine desulfur 99.1 4.2E-10 9.2E-15 94.4 7.4 128 23-166 20-180 (251)
439 KOG2878 Predicted kinase [Gene 99.1 3.9E-10 8.4E-15 92.2 6.8 115 48-164 31-167 (282)
440 COG0488 Uup ATPase components 99.1 1.4E-10 3.1E-15 111.3 5.0 136 14-164 9-187 (530)
441 TIGR01187 potA spermidine/putr 99.1 1.4E-10 2.9E-15 106.1 4.5 115 53-167 1-137 (325)
442 PRK03839 putative kinase; Prov 99.0 2.5E-09 5.4E-14 89.4 11.7 100 50-190 2-101 (180)
443 TIGR01359 UMP_CMP_kin_fam UMP- 99.0 2.8E-09 6.2E-14 89.3 11.9 34 50-86 1-34 (183)
444 PRK12269 bifunctional cytidyla 99.0 1.4E-09 3E-14 109.7 11.6 96 151-252 191-286 (863)
445 PRK03731 aroL shikimate kinase 99.0 3.5E-09 7.5E-14 87.8 11.6 35 49-86 3-37 (171)
446 PLN03140 ABC transporter G fam 99.0 1.3E-09 2.7E-14 116.6 11.0 134 16-164 174-370 (1470)
447 PRK14530 adenylate kinase; Pro 99.0 2.1E-09 4.5E-14 92.6 10.3 35 49-86 4-38 (215)
448 cd01672 TMPK Thymidine monopho 99.0 9.1E-09 2E-13 87.2 13.9 31 49-79 1-31 (200)
449 KOG3354 Gluconate kinase [Carb 99.0 4.6E-09 9.9E-14 82.4 10.7 43 44-89 8-50 (191)
450 PRK08154 anaerobic benzoate ca 99.0 1.8E-09 3.9E-14 97.9 10.0 161 44-246 129-300 (309)
451 PRK13409 putative ATPase RIL; 99.0 1.2E-10 2.6E-15 114.3 2.3 137 12-164 77-246 (590)
452 TIGR00956 3a01205 Pleiotropic 99.0 3.7E-10 8.1E-15 120.7 6.2 143 22-164 761-936 (1394)
453 PLN03073 ABC transporter F fam 99.0 1.8E-10 3.9E-15 115.2 3.4 142 21-164 178-378 (718)
454 PRK14532 adenylate kinase; Pro 99.0 2E-09 4.4E-14 90.7 9.2 35 50-87 2-36 (188)
455 COG1101 PhnK ABC-type uncharac 99.0 3.9E-10 8.5E-15 93.6 4.5 132 20-167 19-185 (263)
456 PF01583 APS_kinase: Adenylyls 99.0 8.2E-10 1.8E-14 88.9 6.0 109 47-186 1-117 (156)
457 cd02021 GntK Gluconate kinase 99.0 1.2E-08 2.5E-13 82.7 12.7 36 50-88 1-36 (150)
458 COG4178 ABC-type uncharacteriz 99.0 7.8E-10 1.7E-14 106.1 6.6 141 19-164 391-549 (604)
459 PRK14527 adenylate kinase; Pro 99.0 3.8E-09 8.1E-14 89.2 10.1 40 44-86 2-41 (191)
460 PRK14531 adenylate kinase; Pro 99.0 3.9E-09 8.4E-14 88.5 10.1 141 49-216 3-156 (183)
461 PRK13808 adenylate kinase; Pro 99.0 2.1E-09 4.4E-14 97.0 8.8 34 50-86 2-35 (333)
462 TIGR01271 CFTR_protein cystic 99.0 3.7E-10 8E-15 121.7 4.7 122 44-166 448-584 (1490)
463 PLN03140 ABC transporter G fam 99.0 4.2E-10 9.2E-15 120.2 5.1 127 38-165 896-1054(1470)
464 COG4161 ArtP ABC-type arginine 99.0 9E-10 2E-14 87.3 5.6 125 44-168 24-179 (242)
465 PRK13973 thymidylate kinase; P 99.0 2E-08 4.4E-13 86.2 14.5 36 47-82 2-37 (213)
466 TIGR00956 3a01205 Pleiotropic 99.0 3.3E-10 7.2E-15 121.1 3.8 128 22-164 76-243 (1394)
467 KOG0059 Lipid exporter ABCA1 a 99.0 5.1E-10 1.1E-14 114.9 4.6 140 14-168 570-736 (885)
468 cd02030 NDUO42 NADH:Ubiquinone 98.9 4.4E-09 9.6E-14 90.7 9.7 73 169-246 143-216 (219)
469 cd03278 ABC_SMC_barmotin Barmo 98.9 2.4E-10 5.3E-15 96.8 1.8 121 44-166 19-153 (197)
470 PLN02199 shikimate kinase 98.9 7.1E-09 1.5E-13 91.4 10.7 162 47-251 101-292 (303)
471 COG4778 PhnL ABC-type phosphon 98.9 2.5E-09 5.4E-14 85.6 7.0 121 44-164 33-186 (235)
472 PRK03846 adenylylsulfate kinas 98.9 1.6E-08 3.5E-13 85.9 12.5 44 43-86 19-64 (198)
473 TIGR00041 DTMP_kinase thymidyl 98.9 1.1E-08 2.5E-13 86.5 11.5 29 48-76 3-31 (195)
474 PRK00300 gmk guanylate kinase; 98.9 6.5E-09 1.4E-13 88.8 10.0 29 45-73 2-30 (205)
475 PTZ00243 ABC transporter; Prov 98.9 6.7E-10 1.4E-14 119.9 4.4 127 22-165 675-817 (1560)
476 PRK00889 adenylylsulfate kinas 98.9 3.2E-09 7E-14 88.3 7.3 40 46-85 2-43 (175)
477 PRK09825 idnK D-gluconate kina 98.9 1.3E-07 2.8E-12 78.6 16.8 164 47-248 2-169 (176)
478 COG0529 CysC Adenylylsulfate k 98.9 2.5E-08 5.5E-13 80.4 11.9 47 43-89 18-66 (197)
479 smart00072 GuKc Guanylate kina 98.9 2.6E-08 5.5E-13 83.6 12.4 175 48-246 2-181 (184)
480 cd02019 NK Nucleoside/nucleoti 98.9 4.9E-09 1.1E-13 72.9 6.7 23 50-72 1-23 (69)
481 TIGR00455 apsK adenylylsulfate 98.9 1.5E-08 3.2E-13 85.1 10.8 43 44-86 14-58 (184)
482 PF13238 AAA_18: AAA domain; P 98.9 3.2E-10 7E-15 89.1 0.6 114 51-192 1-115 (129)
483 KOG0054 Multidrug resistance-a 98.9 6.1E-10 1.3E-14 115.7 2.7 172 19-207 1137-1336(1381)
484 cd03270 ABC_UvrA_I The excisio 98.9 1.7E-09 3.7E-14 93.8 4.9 53 115-167 119-176 (226)
485 PRK13975 thymidylate kinase; P 98.9 5.6E-08 1.2E-12 82.3 13.8 26 48-73 2-27 (196)
486 TIGR01351 adk adenylate kinase 98.9 1.7E-08 3.8E-13 86.5 10.4 33 51-86 2-34 (210)
487 PTZ00088 adenylate kinase 1; P 98.9 4.3E-08 9.3E-13 84.7 12.7 39 46-87 4-42 (229)
488 PRK02496 adk adenylate kinase; 98.9 1.7E-08 3.8E-13 84.6 10.1 167 49-249 2-182 (184)
489 KOG0054 Multidrug resistance-a 98.9 1.3E-09 2.9E-14 113.3 3.7 147 20-168 518-681 (1381)
490 PRK14528 adenylate kinase; Pro 98.8 2E-08 4.3E-13 84.4 9.9 145 49-216 2-160 (186)
491 KOG0927 Predicted transporter 98.8 3.3E-09 7.1E-14 98.9 5.6 138 22-164 391-543 (614)
492 PLN02674 adenylate kinase 98.8 1.8E-08 3.8E-13 87.5 9.5 38 46-86 29-66 (244)
493 COG0563 Adk Adenylate kinase a 98.8 8.9E-09 1.9E-13 85.4 7.3 163 50-248 2-176 (178)
494 COG0125 Tmk Thymidylate kinase 98.8 1.8E-07 3.8E-12 79.4 15.3 31 47-77 2-32 (208)
495 PF00625 Guanylate_kin: Guanyl 98.8 1.4E-08 3.1E-13 85.1 8.3 176 47-245 1-180 (183)
496 PLN02459 probable adenylate ki 98.8 5.5E-08 1.2E-12 84.9 11.2 40 44-86 25-64 (261)
497 PRK14738 gmk guanylate kinase; 98.8 1.8E-08 3.9E-13 86.1 7.9 27 45-71 10-36 (206)
498 PF01202 SKI: Shikimate kinase 98.8 2.3E-08 4.9E-13 81.8 8.2 150 57-245 1-157 (158)
499 PRK14021 bifunctional shikimat 98.8 3.6E-08 7.8E-13 96.0 10.3 160 47-246 5-175 (542)
500 TIGR03574 selen_PSTK L-seryl-t 98.8 7.9E-08 1.7E-12 84.7 11.3 157 50-249 1-167 (249)
No 1
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.8e-37 Score=254.38 Aligned_cols=206 Identities=46% Similarity=0.860 Sum_probs=188.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
.++.+|||+|+|||||||+++.|...++...+.++++|+||+..........+..+|++|.++|.+.+.+.|..+..|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 45699999999999999999999999997788999999999876666666678889999999999999999999999999
Q ss_pred cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHH
Q 019592 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (338)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (338)
+..|.|++..+.+.. ......+.+++|+||.+++.|..+++.+|++|||+++.++|+.|++.||..++|++.+.+..+|
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999864 3455678999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhccc
Q 019592 206 SKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQH 252 (338)
Q Consensus 206 ~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~~ 252 (338)
....+|+|+.||.|.+++||+||+.+..+..+++.+...|...+.+.
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~~~~~ 211 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASSLSEQ 211 (218)
T ss_pred HHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHHhhhh
Confidence 99999999999999999999999999888888888777777654433
No 2
>PTZ00301 uridine kinase; Provisional
Probab=100.00 E-value=5.2e-33 Score=236.09 Aligned_cols=203 Identities=32% Similarity=0.614 Sum_probs=177.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh----CCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQL----HDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l----~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
-.+|||+|+|||||||||+.|++.+ ++..+.++++|+||+..........+...|++|.++|.+.+.+.|..+..+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 3799999999999999999998765 333356899999996543322233345689999999999999999999999
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHH
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (338)
+.+..|.|++..+.+.. ....+.+.+++|+||.++++++.+++.+|++|||+++.++++.|+++|+..++|++.+...+
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 99999999999887753 33456778999999999988899999999999999999999999999998889999999999
Q ss_pred HHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhcc
Q 019592 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (338)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~ 251 (338)
+|.....|.+..|+.|++..||+||+++.++..++..+.++|...+++
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~~~~ 209 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDLEN 209 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999989999999999999887754
No 3
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.2e-33 Score=262.03 Aligned_cols=305 Identities=59% Similarity=0.996 Sum_probs=278.7
Q ss_pred CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC-------CCCEEEEeCCCCCCCCCHHHHHH--ccccCCCC
Q 019592 34 GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH-------DQRVVLVNQDSFYHNLTEQELAR--VHEYNFDH 104 (338)
Q Consensus 34 ~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~-------~~~~~~l~~D~~~~~l~~~~~~~--~~~~~~~~ 104 (338)
.+|.-..+....+.+.+||+.|.++|||||++..+...+. +.++..+++|.||+.++..+... .+.+.|++
T Consensus 30 ~~p~~~~~~~~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~ 109 (473)
T KOG4203|consen 30 ENPSSRAAIPEGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDH 109 (473)
T ss_pred CCcccccccccCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccC
Confidence 3343334444567899999999999999999999888887 67889999999999988777643 33588999
Q ss_pred cccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHH
Q 019592 105 PDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLA 184 (338)
Q Consensus 105 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~ 184 (338)
|++++.+.+...++.+..+..+..|.|++..+.+.......+.++++++++|++.++|...+...+.++|++++.+.++.
T Consensus 110 pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla 189 (473)
T KOG4203|consen 110 PDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLA 189 (473)
T ss_pred CCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhH
Confidence 99999999999999999999999999999999986555566788999999999999999999999999999999999999
Q ss_pred HHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhccccccccCCCcccc
Q 019592 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVI 264 (338)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 264 (338)
|++.|+...+|+.++....+|..+.+|.|..|+.|.+++||.+|+..+++..+++.+.+++...+.......++.++..+
T Consensus 190 ~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~~~~~~~l~~~~~~l 269 (473)
T KOG4203|consen 190 RRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILAEKSYVRLYNNVLSL 269 (473)
T ss_pred HHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhhccccccccccceec
Confidence 99999999999999999999999999999999999999999999999889999999999999999888777888888889
Q ss_pred cccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeCCCeeEEEeecC
Q 019592 265 HSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFCKRLCGVSVIRR 338 (338)
Q Consensus 265 ~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~~~~~~v~ilra 338 (338)
.+++.++++.+.++++.|.+.+|.++.+++.+++.++.+..+|+.+..+.||.|..|.|.....++|+|+|+||
T Consensus 270 ~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~i~gv~i~r~ 343 (473)
T KOG4203|consen 270 PDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCKQICGVSIPRS 343 (473)
T ss_pred CCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccchhccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999988999988899999999996
No 4
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.97 E-value=2.1e-29 Score=216.24 Aligned_cols=206 Identities=45% Similarity=0.831 Sum_probs=176.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
+..++.+|+|+|++|||||||++.|++.++...+.++++|+|+...............|+.|.+++.+.+.+.|..+..+
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 44689999999999999999999999999656689999999986543222233345567889999999999999999999
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHH
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (338)
..+..|.|++..+.+... .....+.+++|+||++++..+.+...+|.+|||++|.+++++|++.|+...+|.+.+....
T Consensus 82 ~~v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~ 160 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVIN 160 (209)
T ss_pred CccccCcccccccccCCC-eEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHH
Confidence 889999999888876432 2334667899999999987678899999999999999999999999998788999999999
Q ss_pred HHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
.|.....|.|..|+.|.++.||+||+++++|..+++.+.++|...+.
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 161 QYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 99998899999999999999999999998788899999888887653
No 5
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.96 E-value=8.2e-30 Score=216.06 Aligned_cols=184 Identities=39% Similarity=0.743 Sum_probs=153.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCC------EEEEeCCCCCCCCCHHHHHH--ccccCCCCcccccHHHHHHHHHHhc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQR------VVLVNQDSFYHNLTEQELAR--VHEYNFDHPDAFDTEKLLSSMEKLR 121 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~------~~~l~~D~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~l~ 121 (338)
||||+|++||||||||+.|+..|+..+ ..+++.|+|+.......... ...+.|+.|.+++++.+.+.|..+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999998543 56888898885433322222 2356788999999999999999999
Q ss_pred cCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHH
Q 019592 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATV 201 (338)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~ 201 (338)
.++.+..|.|++..+.+.. ......+.+++|+||.++++++.+++.+|++|||+++.++++.|++.||..++|++.+.+
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999887743 233456889999999999988889999999999999999999999999998999999999
Q ss_pred HHHHhhcCcchhhhhccCcCccccEEecCCCCcH
Q 019592 202 LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (338)
Q Consensus 202 ~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (338)
..+|. ..+|.|..||.|+++.||+||++...|.
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~~~ 192 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPSGPTND 192 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEESCTSSH
T ss_pred EEEee-cCChhhhhheeccccccEEEECCCCCcc
Confidence 99999 7889999999999999999999886653
No 6
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.96 E-value=3.9e-28 Score=207.86 Aligned_cols=205 Identities=43% Similarity=0.810 Sum_probs=175.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
..+++.+|+|+|++||||||+++.|++.++...+.++++|+|+.............+.|+.|..++...+.+.|..+..+
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g 81 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNG 81 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCC
Confidence 35778999999999999999999999998765688999999885433323333456678889999999999999999999
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHH
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (338)
..+..|.|++....+. .......+.+++|+||.++++++.+.+.+|.+|||+++.+.+++|+++|+...+|++.+....
T Consensus 82 ~~v~~p~yd~~~~~~~-~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~ 160 (207)
T TIGR00235 82 SPIDVPVYDYVNHTRP-KETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVID 160 (207)
T ss_pred CCEecccceeecCCCC-CceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHH
Confidence 9999999998877663 223345677999999999987788889999999999999999999999998888999999999
Q ss_pred HHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHh
Q 019592 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
+|....+|.|..|+.|.+..||+||+++..++..++-+.+.|+..+
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T TIGR00235 161 QYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHLL 206 (207)
T ss_pred HHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHhh
Confidence 9998889999999999999999999999888888998888887654
No 7
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.96 E-value=4.2e-28 Score=206.44 Aligned_cols=196 Identities=58% Similarity=0.992 Sum_probs=169.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 129 (338)
+|||+|++||||||+++.|++.++...+.++++|+|++.+...+........|+.|..++.+.+.+.|..+..+..+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999998555689999999997776665555556667888889999999999999998888999
Q ss_pred cccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcC
Q 019592 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFV 209 (338)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 209 (338)
.|++..+.+..... .+.+++++|+||++.+.++.+.+.+|.+|||++|.+.+++|++.|+...++.+.+.....|....
T Consensus 81 ~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 99998887753332 56778999999999998788889999999999999999999999997788888888888998889
Q ss_pred cchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 210 KPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 210 ~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
.+.|..|+.++++.||+||+++.++...+..+.++++
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~ 196 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIK 196 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCCccHHHHHHHHHHh
Confidence 9999999999999999999988777677777776664
No 8
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.96 E-value=7.2e-28 Score=207.30 Aligned_cols=177 Identities=21% Similarity=0.247 Sum_probs=148.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHH------HccccCCCC--cccccHHHHHHHHHH
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELA------RVHEYNFDH--PDAFDTEKLLSSMEK 119 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~------~~~~~~~~~--~~~~~~~~l~~~l~~ 119 (338)
+|||+|+|||||||+++.|.+.+... .+.++++|+||+. ...+.. ......|++ |++++.+.+.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~-~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~ 79 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRY-ERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRT 79 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccC-CchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHH
Confidence 58999999999999999999888643 4789999999973 222211 123467888 999999999999999
Q ss_pred hccCCccccccccCcC----------CccCCCCccccCCCcEEEEecccc---ccchHHHhhcCeEEEEecCHHHHHHHH
Q 019592 120 LRHGQAVDIPNYDFKS----------YKNNVFPARRVNPSDVILLEGILV---FHDSRVRELMNMKIFVDTDADVRLARR 186 (338)
Q Consensus 120 l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~vlIldg~~~---~~d~~~~~~~d~~i~l~~~~~~~~~R~ 186 (338)
+..++.+..|.|++.. +.+. .......+.+++|+||.+. +.+..+++.+|++|||+++.+.++.|+
T Consensus 80 L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft-~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irR 158 (277)
T cd02029 80 YGETGRGRSRYYLHSDEEAAPFNQEPGTFT-PWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQK 158 (277)
T ss_pred HHcCCCcccceeeccccccccccCCCCccC-CcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHH
Confidence 9999999999997632 2221 1112346889999999984 445799999999999999999999999
Q ss_pred HhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEec
Q 019592 187 IRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 229 (338)
Q Consensus 187 ~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~ 229 (338)
+.||..+||++.+.+.++|..+. |.|..||.|++..||+++.
T Consensus 159 I~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 159 IHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred HHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 99999999999999999999988 9999999999999999984
No 9
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.95 E-value=1.5e-27 Score=224.33 Aligned_cols=224 Identities=25% Similarity=0.472 Sum_probs=179.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
+...+|||+|+||||||||++.|++.++ +..++++|+|+... ....+.|++|..++.+.+.+.|..+..++.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp--~vgvIsmDdy~~~~------~~i~~nfD~P~a~D~d~L~enL~~Lr~Gks 134 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVISMDNYNDSS------RIIDGNFDDPRLTDYDTLLDNIHDLKAGKS 134 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC--CcEEEEEcceecch------hhhCccCCChhhcchhHHHHHHHHHhCCCc
Confidence 4568999999999999999999999874 47899999986321 123456889999999999999999999999
Q ss_pred cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHH
Q 019592 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (338)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (338)
+.+|.|++..+.+.........+.+++|+||.+++ .+.+++.+|++|||+++.+.++.|++.||...+|++.+.+.++|
T Consensus 135 V~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL-~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~ 213 (656)
T PLN02318 135 VQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQI 213 (656)
T ss_pred eecCccccccCcccCCceeecCCCcEEEEechhhc-cHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999988774333345678899999999998 58999999999999999999999999999999999999999999
Q ss_pred hhcCcchhhhhccCcCccccEEecC------CCCcHHHH-----HHHHHHHHHHhccccc--cccCCCcccccccceeee
Q 019592 206 SKFVKPAFDDFILPTKKYADIIIPR------GGDNHVAI-----DLIVQHIRTKLGQHDL--CKIYPNLYVIHSTFQIRG 272 (338)
Q Consensus 206 ~~~~~p~~~~~i~~~~~~aD~iI~~------~~~~~~~~-----~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 272 (338)
....+|.|..|+.|.++.||+||.| +..++..+ +..+++|+..|.++.. .+...++++.+++.....
T Consensus 214 ~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~ 293 (656)
T PLN02318 214 SETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPET 293 (656)
T ss_pred HHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchh
Confidence 9999999999999999999999965 23444444 7788888888876532 122234555444443333
Q ss_pred ceeeec
Q 019592 273 MHTLIR 278 (338)
Q Consensus 273 ~~~~lr 278 (338)
...+||
T Consensus 294 ~~e~LR 299 (656)
T PLN02318 294 CQSYLR 299 (656)
T ss_pred ccceEE
Confidence 333443
No 10
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.94 E-value=1.8e-26 Score=198.43 Aligned_cols=183 Identities=27% Similarity=0.461 Sum_probs=143.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC----CCCEEEEeCCCCCCCCCHHHHHHcccc-CCCCcccccHHHHHHHHHHhccC-
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLH----DQRVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEKLRHG- 123 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~----~~~~~~l~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~- 123 (338)
+|||+|+|||||||+++.|++.+. ...+.++++|+||.. .......+.. .++.|+++|.+.+.+.|..+..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~--~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~ 78 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP--NKELIERGLMDRKGFPESYDMEALLKFLKDIKSGK 78 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc--HHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCC
Confidence 589999999999999999999984 245789999999843 3333322222 24568999999999999999994
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccchH-----HHhhcCeEEEEecCHHHHHHHHHhhCc---cccC
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-----VRELMNMKIFVDTDADVRLARRIRRDT---VEKG 195 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~-----~~~~~d~~i~l~~~~~~~~~R~~~R~~---~~~~ 195 (338)
..+..|.|++..+.+.........+++++|+||++++.++. +++.+|++|||++|.+++.+|+.+|.. .+++
T Consensus 79 ~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~ 158 (220)
T cd02025 79 KNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAF 158 (220)
T ss_pred CcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988765443336788999999999987765 899999999999999998666666532 2334
Q ss_pred CCHHH----------------HHHHHhhcCcchhhhhccCcCccccEEecCCCCc
Q 019592 196 RDIAT----------------VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (338)
Q Consensus 196 ~~~~~----------------~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (338)
++... ..++|....+|.+..||.|+++.||+||..+..+
T Consensus 159 r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 159 SDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred hCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 33332 3345778889999999999999999999877544
No 11
>PRK15453 phosphoribulokinase; Provisional
Probab=99.94 E-value=1.1e-25 Score=195.35 Aligned_cols=184 Identities=21% Similarity=0.279 Sum_probs=147.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCC-CCHHHH----HHccccCCCC--cccccHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHN-LTEQEL----ARVHEYNFDH--PDAFDTEKLLS 115 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~-l~~~~~----~~~~~~~~~~--~~~~~~~~l~~ 115 (338)
..++.+|||+|.|||||||+++.|+..++.. ++.++++|+||+. ...... .......|++ |++++.+.+.+
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3577899999999999999999999988643 4789999999863 211111 1122336777 99999999999
Q ss_pred HHHHhccCCccccccccCcC-----CccCCCC---cccc-CCCcEEEEecccccc---chHHHhhcCeEEEEecCHHHHH
Q 019592 116 SMEKLRHGQAVDIPNYDFKS-----YKNNVFP---ARRV-NPSDVILLEGILVFH---DSRVRELMNMKIFVDTDADVRL 183 (338)
Q Consensus 116 ~l~~l~~~~~~~~~~~~~~~-----~~~~~~~---~~~~-~~~~vlIldg~~~~~---d~~~~~~~d~~i~l~~~~~~~~ 183 (338)
.|..+..+.....|.|.... +.+.... ...+ .+.+++|+||.+.++ +..++..+|++|||+++.+.++
T Consensus 82 ~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ 161 (290)
T PRK15453 82 LFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEW 161 (290)
T ss_pred HHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHH
Confidence 99999998877777775322 2221111 1123 568999999998863 4679999999999999999999
Q ss_pred HHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEec
Q 019592 184 ARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 229 (338)
Q Consensus 184 ~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~ 229 (338)
.|++.||..+||++.+.+.++|..+. |.|..||.|++..+|+++.
T Consensus 162 irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 162 IQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 99999999999999999999999985 9999999999999999873
No 12
>PLN02348 phosphoribulokinase
Probab=99.94 E-value=8.9e-26 Score=204.67 Aligned_cols=182 Identities=25% Similarity=0.461 Sum_probs=153.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------CCEEEEeCCCCCCCCCHHHHHHccccCCCCccc
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----------------QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDA 107 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-----------------~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~ 107 (338)
.+.+.+|||+|+||||||||++.|++.|+. ..+.++++|+||.. ....... ....+.+|.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~-dr~~r~~-~g~t~ldP~a 123 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL-DRTGRKE-KGVTALDPRA 123 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC-ChhhHhh-cCCccCCccc
Confidence 467899999999999999999999999862 23678999999843 2222222 2333456889
Q ss_pred ccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHH
Q 019592 108 FDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRI 187 (338)
Q Consensus 108 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~ 187 (338)
++++.+.+.|..++.|+.+..|.|++..+.... ...+.+.+++|+||.+.++++.+++.+|++|||+++.++++.|++
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHH
Confidence 999999999999999999999999999987532 234677899999999998888899999999999999999999999
Q ss_pred hhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCC
Q 019592 188 RRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG 231 (338)
Q Consensus 188 ~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~ 231 (338)
+|+...+|.+.+.+..++.. ..|.|..|+.|.++.||+||.--
T Consensus 202 ~RD~~eRG~S~EeV~~~i~a-r~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 202 QRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred HhhHhhcCCCHHHHHHHHHh-cCcchhhhcccccccCCEEEEec
Confidence 99988899999999888765 48999999999999999999643
No 13
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.94 E-value=1.6e-25 Score=198.19 Aligned_cols=186 Identities=25% Similarity=0.442 Sum_probs=149.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C--CCEEEEeCCCCCCCCCHHHHHHcc-ccCCCCcccccHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--D--QRVVLVNQDSFYHNLTEQELARVH-EYNFDHPDAFDTEKLLSSMEK 119 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~--~~~~~l~~D~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 119 (338)
.+.+.+|||+|++||||||+++.|.+.+. + ..+.++++|+|+.... .....+ ...++.|+++|.+.+.+.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~--~l~~~g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ--VLKERNLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH--HHHHcCCccccCCChhccHHHHHHHHHH
Confidence 46789999999999999999999998886 1 2478899999995432 222221 123567999999999999999
Q ss_pred hccCCc-cccccccCcCCccCCCCccccCCCcEEEEeccccccchH----------HHhhcCeEEEEecCHHHHHHHHHh
Q 019592 120 LRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----------VRELMNMKIFVDTDADVRLARRIR 188 (338)
Q Consensus 120 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~----------~~~~~d~~i~l~~~~~~~~~R~~~ 188 (338)
+..|.. +..|.|++..+.+.........+++++|+||++.++++. +.+.+|++|||++|.+.+.+|.++
T Consensus 137 Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~ 216 (290)
T TIGR00554 137 LKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYIN 216 (290)
T ss_pred HHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHH
Confidence 999885 899999999998865544556789999999999987665 468999999999999999999888
Q ss_pred hCccc-------------------cCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCC
Q 019592 189 RDTVE-------------------KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGG 232 (338)
Q Consensus 189 R~~~~-------------------~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~ 232 (338)
|...- ++.+.....+.|.....|.+.+||.|.+..||+||..+.
T Consensus 217 R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 217 RFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 74211 113344455678999999999999999999999998774
No 14
>PRK05439 pantothenate kinase; Provisional
Probab=99.93 E-value=5.2e-25 Score=196.13 Aligned_cols=189 Identities=26% Similarity=0.453 Sum_probs=150.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHHcccc-CCCCcccccHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSME 118 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----~~~~~l~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~ 118 (338)
..+.+.+|||+|++||||||+++.|+..+.. ..+.++++|+||... .+....+.. .++.|+++|.+.+.+.|.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~--~~l~~~~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN--AVLEERGLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH--HHHhhhhccccCCCcccccHHHHHHHHH
Confidence 3457899999999999999999999997752 358999999999543 233222222 256799999999999999
Q ss_pred HhccCCc-cccccccCcCCccCCCCccccCCCcEEEEeccccccchHH------HhhcCeEEEEecCHHHHHHHHHhhCc
Q 019592 119 KLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV------RELMNMKIFVDTDADVRLARRIRRDT 191 (338)
Q Consensus 119 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~------~~~~d~~i~l~~~~~~~~~R~~~R~~ 191 (338)
.++.|.. +..|.|++..+.+.......+.+++++|+||++.++.+.. .+.+|++|||+++.+.+.+|++.|..
T Consensus 160 ~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~ 239 (311)
T PRK05439 160 DVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFL 239 (311)
T ss_pred HHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHH
Confidence 9999986 8999999999987644445567899999999998865555 89999999999999998888777653
Q ss_pred cc-------------------cCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCc
Q 019592 192 VE-------------------KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (338)
Q Consensus 192 ~~-------------------~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (338)
.. .+++.....++|.....|.+.+||.|++..||+||..+.++
T Consensus 240 ~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h 301 (311)
T PRK05439 240 KLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADH 301 (311)
T ss_pred HHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCC
Confidence 21 12233445567888888999999999999999999887554
No 15
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.93 E-value=4.9e-25 Score=183.84 Aligned_cols=175 Identities=27% Similarity=0.473 Sum_probs=143.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 127 (338)
+|+|+|++||||||+++.|++.+.. .++.++++|+||+.. ...... ...++.|..+|.+.+.+.|..+..++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~-~~~~~~--~g~~d~~~~~d~~~l~~~l~~l~~~~~~~ 77 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR-KTPRDE--DGNYDFESILDLDLLNKNLHDLLNGKEVE 77 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc-cccccc--CCCCCCCccccHHHHHHHHHHHHCCCeee
Confidence 5899999999999999999998852 357899999999755 111111 22356666689999999999999999999
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHH-HHHHHHhhCccccCCCHHHHHHHHh
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADV-RLARRIRRDTVEKGRDIATVLDQYS 206 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~-~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (338)
.|.|++..+.+.........+.+++|+||++++ .+.+++.+|++|||+++.+. ++.|++.||..++|++.+....+|.
T Consensus 78 ~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l-~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~ 156 (179)
T cd02028 78 LPIYDFRTGKRRGYRKLKLPPSGVVILEGIYAL-NERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWP 156 (179)
T ss_pred cccceeECCccCCCceEEeCCCCEEEEecHHhc-CHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcc
Confidence 999999998875432345678899999999998 57999999999999999998 9999999999999999999999953
Q ss_pred hcCcchhhhhccCcCccccEEec
Q 019592 207 KFVKPAFDDFILPTKKYADIIIP 229 (338)
Q Consensus 207 ~~~~p~~~~~i~~~~~~aD~iI~ 229 (338)
...+.+..|+.|+++.||+|++
T Consensus 157 -~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 157 -SVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred -cccCchhhcCCCchhccceecc
Confidence 3444455556789999999984
No 16
>PRK07429 phosphoribulokinase; Provisional
Probab=99.91 E-value=1.6e-23 Score=189.18 Aligned_cols=183 Identities=25% Similarity=0.502 Sum_probs=152.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
+.+++.+|||+|+|||||||+++.|++.+++..+.+++.|+|+. ....+.... .+...+|...+.+.+.+.+..+..+
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~-~~~~~r~~~-g~~~l~p~~~~~d~l~~~l~~L~~g 81 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHS-YDRKQRKEL-GITALDPRANNLDIMYEHLKALKTG 81 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccccc-CCHHHHHhc-CCcccCccchHHHHHHHHHHHHHCC
Confidence 45678999999999999999999999999877778889999863 233333332 2233457788888999999999999
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHH
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (338)
+.+..|.|++....... .....+.+++|+||++.+++..+++.+|++|||+++.+++++|+++|+...+|.+.+.+..
T Consensus 82 ~~I~~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~ 159 (327)
T PRK07429 82 QPILKPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLA 159 (327)
T ss_pred CceecceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 99999999998876532 2344567899999999877888899999999999999999999999998778888888887
Q ss_pred HHhhcCcchhhhhccCcCccccEEecCC
Q 019592 204 QYSKFVKPAFDDFILPTKKYADIIIPRG 231 (338)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~iI~~~ 231 (338)
.+.. ..|.+..|+.|.+..||+||.+.
T Consensus 160 ~i~~-r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 160 EIEA-REPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHHH-hCccHhhhhcccccCCCEEEEcC
Confidence 7765 47899999999999999999765
No 17
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.91 E-value=2.1e-23 Score=184.65 Aligned_cols=177 Identities=27% Similarity=0.517 Sum_probs=148.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 129 (338)
+|||+|+|||||||+++.|++.+++.+..+++.|+|++ +...+.... ...+.+|...+++.+.+.+..++.++.+..|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~-~~~~~r~~~-g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P 78 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS-LDRKGRKET-GITALDPRANNFDLMYEQLKALKEGQAIEKP 78 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc-CCHHHHHHh-hcccccccchhHHHHHHHHHHHHCCCCcccc
Confidence 58999999999999999999999877788999998874 333333332 3344567777788888999999999999999
Q ss_pred cccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcC
Q 019592 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFV 209 (338)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 209 (338)
.|++..+.... .....+.+++|+||++.++++.+++.+|++|||+++.+++++|+++|+...+|.+.+.+.+.+.. .
T Consensus 79 ~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r 155 (273)
T cd02026 79 IYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-R 155 (273)
T ss_pred cccccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-h
Confidence 99988876421 23345679999999998878899999999999999999999999999987789899999988876 4
Q ss_pred cchhhhhccCcCccccEEecCC
Q 019592 210 KPAFDDFILPTKKYADIIIPRG 231 (338)
Q Consensus 210 ~p~~~~~i~~~~~~aD~iI~~~ 231 (338)
.|.+..|+.|+++.||+||...
T Consensus 156 ~~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 156 KPDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred chhHHHHhccccccCcEEEEcc
Confidence 7899999999999999999655
No 18
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.88 E-value=3.5e-22 Score=166.26 Aligned_cols=164 Identities=16% Similarity=0.258 Sum_probs=124.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 129 (338)
+|+|+|++||||||+++.|++.++ ++.++++|+||+..........+.+.|+.|+++|.+.+.+.|..+..+..+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~ 78 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKF 78 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCc
Confidence 589999999999999999999884 488999999997654333333355679999999999999999999998765444
Q ss_pred cccCcCCccC-------------CCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccc-cC
Q 019592 130 NYDFKSYKNN-------------VFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KG 195 (338)
Q Consensus 130 ~~~~~~~~~~-------------~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~-~~ 195 (338)
.++....... ........+.+++|+||.+++.++.+...+|++|||+++.+++++|+++|+... .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~ 158 (187)
T cd02024 79 LRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLE 158 (187)
T ss_pred ccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccC
Confidence 4444332211 011223467789999999998888999999999999999999999999998543 33
Q ss_pred CCHHHHHHHHhhcCcchhhh
Q 019592 196 RDIATVLDQYSKFVKPAFDD 215 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~ 215 (338)
..+..-..++.+.++|.|..
T Consensus 159 ~~w~Dp~~yf~~~v~p~y~~ 178 (187)
T cd02024 159 GFWPDPPGYFDGHVWPMYLK 178 (187)
T ss_pred cccCCCCcccccccchhHHH
Confidence 33444555666667777654
No 19
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.88 E-value=1.8e-21 Score=169.14 Aligned_cols=188 Identities=21% Similarity=0.308 Sum_probs=145.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEE-EeCCCCCCCCCHHHHHHcccc-CCCCcccccHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVL-VNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEK 119 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~-l~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~ 119 (338)
..+++.+|||+|++|||||||++.|++.+++.+ +.+ ++.|+|+.... .....+.. .++.|..++...+.+.+..
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~--~~~~~g~~~~~~~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNA--VLDAHGLRPRKGAPETFDVAGLAALLRR 106 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHH--HHHhcccccccCCCCCCCHHHHHHHHHH
Confidence 456789999999999999999999999987543 244 89999884422 22222111 2456788999999999999
Q ss_pred hccCC-ccccccccCcCCccCCCCccccCCCcEEEEeccccccch----HHHhhcCeEEEEecCHHHHHHHHHhhCcccc
Q 019592 120 LRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (338)
Q Consensus 120 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~----~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~ 194 (338)
+..+. .+..|.|+..+..............+++|+||.+.+.+. .+.+.+|.+|||++|.+.+++|+..|+ ...
T Consensus 107 l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~ 185 (229)
T PRK09270 107 LRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAG 185 (229)
T ss_pred HHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-Hhc
Confidence 99887 788899998887764332222235789999999887653 567789999999999999999999995 456
Q ss_pred CCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcH
Q 019592 195 GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (338)
|.+.+...+.+.....|.+ +|+.|.++.||+||.|++.++
T Consensus 186 g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~~ 225 (229)
T PRK09270 186 GLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATGE 225 (229)
T ss_pred CCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCcc
Confidence 7788888888776556655 688889999999999886543
No 20
>PRK06696 uridine kinase; Validated
Probab=99.87 E-value=1.2e-21 Score=169.56 Aligned_cols=181 Identities=25% Similarity=0.342 Sum_probs=132.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHHccccCCCC-----cccccHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYNFDH-----PDAFDTEKLLSSM 117 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l 117 (338)
.+.+.+|||+|++||||||+|+.|++.++.. .+..+++|+||... ......+ +.+ +.++|.+.+.+.+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~--~~r~~~~---~~~~~g~~~~~~d~~~L~~~l 93 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR--VIRYRRG---RESAEGYYEDAYDYTALRRLL 93 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH--HHHHHcC---CCChhhcCccccCHHHHHHHH
Confidence 4578999999999999999999999998643 35667799999543 3322221 222 2578888888876
Q ss_pred HHh-ccCC--ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCcccc
Q 019592 118 EKL-RHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (338)
Q Consensus 118 ~~l-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~ 194 (338)
... ..+. .+..|.+++.................++|+||++++ ++.+...+|.+|||++|.+++++|++.|+...+
T Consensus 94 ~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~-~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~ 172 (223)
T PRK06696 94 LDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLL-RPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAF 172 (223)
T ss_pred HhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHh-hhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhh
Confidence 653 3332 245556776665543222333456789999999986 688899999999999999999999999986666
Q ss_pred CCCHHHHHHHHhhcCcchhhhhccCc--CccccEEecCCC
Q 019592 195 GRDIATVLDQYSKFVKPAFDDFILPT--KKYADIIIPRGG 232 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~i~~~--~~~aD~iI~~~~ 232 (338)
|. .......|.....|.+..|+.+. ++.||+||+|+.
T Consensus 173 g~-~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 173 GS-YEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred CC-chHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 64 44556667777778888887554 788999998874
No 21
>PRK07667 uridine kinase; Provisional
Probab=99.84 E-value=4.6e-20 Score=155.99 Aligned_cols=172 Identities=18% Similarity=0.320 Sum_probs=123.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHHccccCCCC--cccccHHHHHH-HHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYNFDH--PDAFDTEKLLS-SMEK 119 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~-~l~~ 119 (338)
.+...+|||+|++||||||+++.|++.++.. .+.+++.|+|+....... ..+...+.. ...+|...+.+ .+..
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~--~~~~~~~~~~~~~~~d~~~L~~~v~~~ 91 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRY--HTGFEEWYEYYYLQWDIEWLRQKFFRK 91 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHH--hcCCCchhhhhhhhhhHHHHHHHHHHh
Confidence 3456899999999999999999999988643 467999999985432211 111110100 12466676764 4678
Q ss_pred hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHH
Q 019592 120 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (338)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 199 (338)
+..++.+.+|.|++....... ......+.+++|+||++++ +..+.+.+|.+|||++|.+++++|+++|+. .+
T Consensus 92 L~~~~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~-~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~----~~-- 163 (193)
T PRK07667 92 LQNETKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQ-RKEWRDFFHYMVYLDCPRETRFLRESEETQ----KN-- 163 (193)
T ss_pred hcCCCeEEEeeeccccccccc-cceecCCCCEEEEEehhhh-hhhHHhhceEEEEEECCHHHHHHHHhcccH----hH--
Confidence 888888999999998876532 2223456799999999965 688999999999999999999999998762 12
Q ss_pred HHHHHHhhcCcchhhhhccC--cCccccEEe
Q 019592 200 TVLDQYSKFVKPAFDDFILP--TKKYADIII 228 (338)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~--~~~~aD~iI 228 (338)
..+|..+..+.++.|+.. .+..||+||
T Consensus 164 --~~~~~~r~~~a~~~y~~~~~~~~~ad~i~ 192 (193)
T PRK07667 164 --LSKFKNRYWKAEDYYLETESPKDRADLVI 192 (193)
T ss_pred --HHHHHHHhHHHHHHHHhhcChHhhCcEEe
Confidence 234444445677777642 278899997
No 22
>PRK08233 hypothetical protein; Provisional
Probab=99.77 E-value=1.6e-17 Score=139.32 Aligned_cols=174 Identities=22% Similarity=0.411 Sum_probs=115.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 126 (338)
++.+|+|+|++||||||+++.|++.++. ..++..|.++......+...+..... ....++.+.+.+.+..+...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--- 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRYDFDNCPEDICKWIDKGA-NYSEWVLTPLIKDIQELIAK--- 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCEEcccCchhhhhhhhccC-ChhhhhhHHHHHHHHHHHcC---
Confidence 4689999999999999999999998863 35566676653322222211111000 01233444444444332211
Q ss_pred ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCcccc-CCCHHHHHHHH
Q 019592 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK-GRDIATVLDQY 205 (338)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~~~ 205 (338)
...+++|+|+++....+.+...+|++|||++|.+++++|+++|+.... ..........|
T Consensus 76 --------------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 135 (182)
T PRK08233 76 --------------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHY 135 (182)
T ss_pred --------------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 123678999998877788888999999999999999999998874321 22344556667
Q ss_pred hhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 206 SKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 206 ~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
....+|.|..++.+....++++|+++ ..++++.+.|...+.
T Consensus 136 ~~~~~~~y~~~~~~~~~~~~~vId~~----~~~e~i~~~i~~~l~ 176 (182)
T PRK08233 136 LNYARPLYLEALHTVKPNADIVLDGA----LSVEEIINQIEEELY 176 (182)
T ss_pred HHHHHHHHHHHhhcCccCCeEEEcCC----CCHHHHHHHHHHHHH
Confidence 77788889988888777899998644 345566666655543
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.7e-19 Score=146.98 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=101.8
Q ss_pred CCccccccc--ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q 019592 14 SGVHFSGFH--MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------- 75 (338)
Q Consensus 14 ~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------- 75 (338)
..|+|+.++ ++|||| ....|.++||.|+|||||||++++|+.++.|.
T Consensus 7 l~K~y~~~v~AvrdVSF---------------~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 7 LTKSYGSKVQAVRDVSF---------------EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred hhhhccCHHhhhhheeE---------------EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH
Confidence 368887776 899999 99999999999999999999999999999872
Q ss_pred ----CEEEEeC-CCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCC
Q 019592 76 ----RVVLVNQ-DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 76 ----~~~~l~~-D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
++.++.. -.+|..++..++..+....++....--.....+....+....-. ..-.||.++.+++..+++.+++
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 2333332 35777888888776655555433322222333333344333322 3457999999999989999999
Q ss_pred CcEEEEeccccccchHHHh
Q 019592 149 SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~ 167 (338)
|+++++|+|++++|-..+.
T Consensus 152 P~i~vlDEP~sGLDi~~~r 170 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRR 170 (245)
T ss_pred CCeEEEcCCCCCccHHHHH
Confidence 9999999999999765443
No 24
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.75 E-value=2.7e-17 Score=141.04 Aligned_cols=146 Identities=26% Similarity=0.419 Sum_probs=121.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHHccccC-CCCcccccHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEYN-FDHPDAFDTEKLLSSME 118 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----~~~~~l~~D~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 118 (338)
..+.+.+|||+|+.|+||||+++.|+..+.. ..+.++.+|.|+.+...-+ ..+... -+.|++||...+.+.+.
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~--~~glm~rKGfPeSyD~~~ll~fl~ 155 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLD--ERGLMARKGFPESYDVAALLRFLS 155 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhh--hccccccCCCCccccHHHHHHHHH
Confidence 4567999999999999999999999988763 2478999999984433222 222222 35599999999999999
Q ss_pred HhccCCc-cccccccCcCCccCCCCccccCCCcEEEEeccccccch----HHHhhcCeEEEEecCHHHHHHHHHhhCc
Q 019592 119 KLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDT 191 (338)
Q Consensus 119 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~----~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 191 (338)
.++.+.. +..|.||+..+.....+......++++|+||...+++. .+.+.||+.||||++.+...+|.+.|-.
T Consensus 156 ~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 156 DVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred HHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence 9997765 89999999999998777788899999999999998776 4567789999999999999999999953
No 25
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.74 E-value=2.4e-18 Score=145.20 Aligned_cols=182 Identities=16% Similarity=0.226 Sum_probs=115.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH-----HH-HHccccCCCCcccccHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ-----EL-ARVHEYNFDHPDAFDTEKLLSSMEK 119 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~-----~~-~~~~~~~~~~~~~~~~~~l~~~l~~ 119 (338)
-.+.+|||+|++||||||+++.|++.++ +.+++.|.+.+.+... .. ..++...+. .+..|...+.+.+-.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~ 79 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITE 79 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhC
Confidence 3468999999999999999999998665 7789998876554221 11 233333333 245665554443210
Q ss_pred ----hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHH--HhhcCeEEEEecCHHHHHHHHHhhCccc
Q 019592 120 ----LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV--RELMNMKIFVDTDADVRLARRIRRDTVE 193 (338)
Q Consensus 120 ----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~--~~~~d~~i~l~~~~~~~~~R~~~R~~~~ 193 (338)
+..-..+.+|.....+.+.. ...+..++++|.|+.+ +..+ ...||.+|+|+||.+++++|+++|++.+
T Consensus 80 d~~~~~~Le~i~HP~V~~~~~~~~-----~~~~~~~vv~eipLL~-E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s 153 (204)
T PRK14733 80 SKEAKKWLEDYLHPVINKEIKKQV-----KESDTVMTIVDIPLLG-PYNFRHYDYLKKVIVIKADLETRIRRLMERDGKN 153 (204)
T ss_pred CHHHHHHHHhhhhHHHHHHHHHHH-----HhcCCCeEEEEechhh-hccCchhhhCCEEEEEECCHHHHHHHHHHcCCCC
Confidence 11111223343322222211 1123468999999987 4443 5689999999999999999999998776
Q ss_pred cCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHH
Q 019592 194 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~ 247 (338)
+......+..|+....+ .+.||+||+|++.+...+...++.+-+
T Consensus 154 ~~~a~~ri~~Q~~~eek----------~~~aD~VI~N~g~~~~~l~~~~~~~~~ 197 (204)
T PRK14733 154 RQQAVAFINLQISDKER----------EKIADFVIDNTELTDQELESKLITTIN 197 (204)
T ss_pred HHHHHHHHHhCCCHHHH----------HHhCCEEEECcCCCHHHHHHHHHHHHH
Confidence 65555555566655544 689999999986244444444444433
No 26
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=8e-19 Score=157.44 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=117.5
Q ss_pred hcCCcccc-c-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q 019592 12 ASSGVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------- 75 (338)
Q Consensus 12 ~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------- 75 (338)
.+..+.|+ + ..|+|||| ++++|.++|+.|||||||||++++|++.+.+.
T Consensus 8 ~~l~k~~~~~~~~l~~vs~---------------~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~ 72 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSF---------------EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE 72 (293)
T ss_pred cceEEEeCCCCEEEeceeE---------------EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC
Confidence 35578887 3 55899999 99999999999999999999999999998751
Q ss_pred ------CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC--ccccccccCcCCccCCCCcccc
Q 019592 76 ------RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 76 ------~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 146 (338)
.+.++.++ .+|..++..++..+....+..+...+.+.+.+.++.+.... ......+|.++.+|+..+.+.+
T Consensus 73 ~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 35667665 47788999998877666665554455667888888888876 4456789999999998888899
Q ss_pred CCCcEEEEeccccccchHHHhhc
Q 019592 147 NPSDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~~~ 169 (338)
.+|+++|+|+|+.++|+..+..+
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~ 175 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREI 175 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHH
Confidence 99999999999999999876554
No 27
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=8.9e-19 Score=146.79 Aligned_cols=259 Identities=15% Similarity=0.169 Sum_probs=165.1
Q ss_pred hcCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q 019592 12 ASSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------- 75 (338)
Q Consensus 12 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------- 75 (338)
.+.+|.|++++ ++|||| .++++.+.|+.|+|||||||..++|.+++.+.
T Consensus 6 e~vtK~Fg~k~av~~isf---------------~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~ 70 (300)
T COG4152 6 EGVTKSFGDKKAVDNISF---------------EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI 70 (300)
T ss_pred ecchhccCceeeecceee---------------eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhh
Confidence 45679998887 799999 99999999999999999999999999999861
Q ss_pred --CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 76 --RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 76 --~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
++.|++.+ ..|+.++..+...+....-+.|..--...+..+|+++...... .+..+|.++.++...-.+.++.|+
T Consensus 71 ~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 71 KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 34555554 4666777666544433334445554555666777777766543 456788888888766666789999
Q ss_pred EEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecC
Q 019592 151 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 230 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~ 230 (338)
++|+|+||+++||-..+.. +-..++...+|.++....+.+...+ +.||-+..-
T Consensus 151 LlILDEPFSGLDPVN~elL---------------k~~I~~lk~~GatIifSsH~Me~vE------------eLCD~llmL 203 (300)
T COG4152 151 LLILDEPFSGLDPVNVELL---------------KDAIFELKEEGATIIFSSHRMEHVE------------ELCDRLLML 203 (300)
T ss_pred EEEecCCccCCChhhHHHH---------------HHHHHHHHhcCCEEEEecchHHHHH------------HHhhhhhee
Confidence 9999999999987532222 3333445667877777777766643 777744432
Q ss_pred CCCcHHHHHHHHHHHHHHhcccccc-ccCCCcccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCe
Q 019592 231 GGDNHVAIDLIVQHIRTKLGQHDLC-KIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFT 309 (338)
Q Consensus 231 ~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~ 309 (338)
. .+...+..-++.|++......+. +.......+...|.+..+.. .++..- ...-..+..++.+-.+..++.-+.
T Consensus 204 ~-kG~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~~ipgi~~~~~-~~~G~~---~i~ie~e~~a~~ifq~~a~~g~i~ 278 (300)
T COG4152 204 K-KGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITE-TKDGSW---RIQIENETVAREIFQEVARDGYIQ 278 (300)
T ss_pred c-CCceEEeccHHHHHHhcCCceEEEeccCchHHHhcCCCceeeee-ccCCce---EeecccchHHHHHHHHHhccceeE
Confidence 2 22234556677777654433221 11112222333343333321 222211 112233445666677777777777
Q ss_pred eeEEeCCC
Q 019592 310 EKQVITPT 317 (338)
Q Consensus 310 ~~~v~tp~ 317 (338)
.+++.-|+
T Consensus 279 ~Fe~~~Ps 286 (300)
T COG4152 279 RFELQEPS 286 (300)
T ss_pred EEeecCCC
Confidence 77777776
No 28
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.73 E-value=4e-18 Score=144.00 Aligned_cols=167 Identities=22% Similarity=0.308 Sum_probs=102.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH------H-HHHccccCCCCcc-cccHHHHHHHHHH-
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------E-LARVHEYNFDHPD-AFDTEKLLSSMEK- 119 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~------~-~~~~~~~~~~~~~-~~~~~~l~~~l~~- 119 (338)
.+|||+|++||||||+++.|++.++ +.+++.|.+.+.+... . ...++...+...+ ..|...+.+.+-.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d 78 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFND 78 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCC
Confidence 4799999999999999999999764 8999999876554321 1 1223333343334 4555444433210
Q ss_pred ---hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCC
Q 019592 120 ---LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (338)
Q Consensus 120 ---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~ 196 (338)
...-..+.+|.......+. .......+++++|.|+.+ +..+.+.||.+|||+||.+++++|+++|++.+...
T Consensus 79 ~~~~~~l~~i~hP~i~~~~~~~----~~~~~~~~~vv~e~pll~-E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~ 153 (195)
T PRK14730 79 PEERRWLENLIHPYVRERFEEE----LAQLKSNPIVVLVIPLLF-EAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEE 153 (195)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH----HHhcCCCCEEEEEeHHhc-CcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHH
Confidence 0000111223222111111 111223468999999988 68888999999999999999999999997543322
Q ss_pred CHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
....+..|+.. .+....||+||.|+++
T Consensus 154 ~~~ri~~Q~~~----------~~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 154 AEARINAQWPL----------EEKVKLADVVLDNSGD 180 (195)
T ss_pred HHHHHHhCCCH----------HHHHhhCCEEEECCCC
Confidence 22222222211 1225789999988853
No 29
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.73 E-value=3.2e-18 Score=144.42 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=107.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------H-HHccccCCCCcccccHHHHHHHHHH---
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------L-ARVHEYNFDHPDAFDTEKLLSSMEK--- 119 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~------~-~~~~~~~~~~~~~~~~~~l~~~l~~--- 119 (338)
+|||+|++||||||+++.|++ .++.+++.|...+.+.... . ..++...+...+..|...+.+.+-.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~----~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~ 76 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE----LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEE 76 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH----CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHH
Confidence 489999999999999999987 2588899998765543321 1 2344434443455665544443210
Q ss_pred -hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCH
Q 019592 120 -LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (338)
Q Consensus 120 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~ 198 (338)
+..-..+.+|.......+.. ......+++++|.|+.+ +..+.+.||.+|||++|.+++++|+++|++.+.
T Consensus 77 ~~~~L~~i~hP~v~~~~~~~~----~~~~~~~~vi~e~pLL~-E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~---- 147 (196)
T PRK14732 77 KLKALNELIHPLVRKDFQKIL----QTTAEGKLVIWEVPLLF-ETDAYTLCDATVTVDSDPEESILRTISRDGMKK---- 147 (196)
T ss_pred HHHHHHHHhhHHHHHHHHHHH----HHHhcCCcEEEEeeeee-EcCchhhCCEEEEEECCHHHHHHHHHHcCCCCH----
Confidence 11111122343322221111 11123468999999988 688889999999999999999999999975533
Q ss_pred HHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
+.....+.... +. .+....||+||.|+++ ...+...++.+.
T Consensus 148 e~a~~ri~~Q~-~~-----~~k~~~aD~vI~N~~~-~~~l~~~v~~l~ 188 (196)
T PRK14732 148 EDVLARIASQL-PI-----TEKLKRADYIVRNDGN-REGLKEECKILY 188 (196)
T ss_pred HHHHHHHHHcC-CH-----HHHHHhCCEEEECCCC-HHHHHHHHHHHH
Confidence 33333332211 11 1236889999998853 344444444443
No 30
>PRK06547 hypothetical protein; Provisional
Probab=99.73 E-value=8e-17 Score=132.99 Aligned_cols=153 Identities=17% Similarity=0.268 Sum_probs=105.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 124 (338)
...+.+|+|.|++||||||+++.|++.++ +.+++.|+||...... + .+...+.+.+.. .++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~~~~~~------------~--~~~~~l~~~~l~--~g~ 72 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYPGWHGL------------A--AASEHVAEAVLD--EGR 72 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceecccccC------------C--hHHHHHHHHHHh--CCC
Confidence 46788999999999999999999999865 7889999988442110 0 122333344433 444
Q ss_pred ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcC-----eEEEEecCHHHHHHHHHhhCccccCCCHH
Q 019592 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMN-----MKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d-----~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 199 (338)
....+ |++...... ....+.+++++|+||.+++ .+..++.+| ++|||++|.+++++|+++|+.. ..
T Consensus 73 ~~~~~-yd~~~~~~~--~~~~l~~~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~~ 143 (172)
T PRK06547 73 PGRWR-WDWANNRPG--DWVSVEPGRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALARDPD-----YA 143 (172)
T ss_pred Cceec-CCCCCCCCC--CcEEeCCCCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----hh
Confidence 44445 666655432 1224456789999999887 467888899 9999999999999999999842 22
Q ss_pred HHHHHHhhcCcchhhhhcc--CcCccccEEec
Q 019592 200 TVLDQYSKFVKPAFDDFIL--PTKKYADIIIP 229 (338)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~--~~~~~aD~iI~ 229 (338)
.....| .+..+.|+. ..+..||+++.
T Consensus 144 ~~~~~w----~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 144 PHWEMW----AAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHH----HHHHHHHHhcCCChhccEEEec
Confidence 333333 344556653 34778998873
No 31
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.73 E-value=3.7e-19 Score=147.66 Aligned_cols=166 Identities=27% Similarity=0.388 Sum_probs=100.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH------HH-HHccccCCCCcccccHHHHHHHHH---
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------EL-ARVHEYNFDHPDAFDTEKLLSSME--- 118 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~------~~-~~~~~~~~~~~~~~~~~~l~~~l~--- 118 (338)
++|||+|..||||||+++.|++ .|+.+++.|...+.+... .. ..++...+...+..|...+.+.+-
T Consensus 1 ~iIglTG~igsGKStv~~~l~~----~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~ 76 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE----LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP 76 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH----TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred CEEEEECCCcCCHHHHHHHHHH----CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence 5899999999999999999999 469999999765444321 11 234444444445566555544321
Q ss_pred -HhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCC
Q 019592 119 -KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (338)
Q Consensus 119 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 197 (338)
.++.-..+.+|........+. ......+++++|.|+.+ +..+...||.+|+|+||.+++++|+++|++......
T Consensus 77 ~~~~~L~~iihP~I~~~~~~~~----~~~~~~~~~v~e~pLL~-E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~ 151 (180)
T PF01121_consen 77 EKLKKLENIIHPLIREEIEKFI----KRNKSEKVVVVEIPLLF-ESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEA 151 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHCHSTSEEEEE-TTTT-TTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH----HhccCCCEEEEEcchhh-hhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHH
Confidence 011111122343322222211 11122389999999988 788999999999999999999999999986654433
Q ss_pred HHHHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
......|+....+ .+.||+||.|+++
T Consensus 152 ~~ri~~Q~~~~~k----------~~~ad~vI~N~g~ 177 (180)
T PF01121_consen 152 EARIASQMPDEEK----------RKRADFVIDNNGS 177 (180)
T ss_dssp HHHHHTS--HHHH----------HHH-SEEEE-SSH
T ss_pred HHHHHhCCCHHHH----------HHhCCEEEECCCC
Confidence 3333445444333 6889999988854
No 32
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.72 E-value=6.1e-18 Score=143.08 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=101.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHH-------HHccccCCCCcccccHHHHHHHHH--
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQEL-------ARVHEYNFDHPDAFDTEKLLSSME-- 118 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~-- 118 (338)
+.+|||+|++||||||+++.|++ + ++.+++.|.+.+.+..... ..++.-.+...+.+|...+.+.+-
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~ 77 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L---GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSD 77 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c---CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCC
Confidence 46899999999999999999998 4 4899999988765532111 122332333334455544443321
Q ss_pred --HhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCC
Q 019592 119 --KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (338)
Q Consensus 119 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~ 196 (338)
.+..-..+.+|.......+.. ......+++++|.|+.+ +..+.+.||.+|+|++|.+++++|+.+|+..+...
T Consensus 78 ~~~~~~L~~i~hP~v~~~~~~~~----~~~~~~~~vv~e~pll~-e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~ 152 (194)
T PRK00081 78 PEARKKLEAILHPLIREEILEQL----QEAESSPYVVLDIPLLF-ENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEE 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcccCCEEEEEehHhh-cCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHH
Confidence 011001122233222111111 11122379999999988 68888999999999999999999999997543332
Q ss_pred CHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
.......|+.... ....||+||.|+++
T Consensus 153 ~~~ri~~Q~~~~~----------~~~~ad~vI~N~g~ 179 (194)
T PRK00081 153 AEAIIASQMPREE----------KLARADDVIDNNGD 179 (194)
T ss_pred HHHHHHHhCCHHH----------HHHhCCEEEECCCC
Confidence 2222222322211 15779999988753
No 33
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.71 E-value=5.2e-18 Score=141.82 Aligned_cols=165 Identities=20% Similarity=0.338 Sum_probs=104.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------HH-HccccCCCCcccccHHHHHHHHHH---
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------LA-RVHEYNFDHPDAFDTEKLLSSMEK--- 119 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~------~~-~~~~~~~~~~~~~~~~~l~~~l~~--- 119 (338)
+|||+|++||||||+++.|++ + ++.+++.|.+.+.+.... .. .++...+...+.+|...+.+.+-.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 76 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L---GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPE 76 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C---CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHH
Confidence 589999999999999999998 4 489999998876654321 11 223323333345665554443321
Q ss_pred -hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCH
Q 019592 120 -LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (338)
Q Consensus 120 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~ 198 (338)
+..-..+.+|.+.....+.. .......++|+|.|+.+ +..+...||.+|||++|.+++++|++.|++.+.
T Consensus 77 ~~~~l~~i~hp~i~~~~~~~~----~~~~~~~~vive~plL~-e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~---- 147 (179)
T cd02022 77 KRKKLEAITHPLIRKEIEEQL----AEARKEKVVVLDIPLLF-ETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSE---- 147 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHccCCCEEEEEehHhh-cCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCH----
Confidence 11112233454433322221 11122369999999988 577788999999999999999999999985433
Q ss_pred HHHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
+.....+....... +....||+||.|+++
T Consensus 148 ~~~~~r~~~Q~~~~------~~~~~aD~vI~N~~~ 176 (179)
T cd02022 148 EEAEARIASQMPLE------EKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHHHHhcCCHH------HHHHhCCEEEECcCC
Confidence 33333333322111 126889999998854
No 34
>PLN02422 dephospho-CoA kinase
Probab=99.71 E-value=1.2e-17 Score=143.18 Aligned_cols=179 Identities=22% Similarity=0.258 Sum_probs=110.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHH-------HHccccCCCCcccccHHHHHHHHH---
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQEL-------ARVHEYNFDHPDAFDTEKLLSSME--- 118 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~--- 118 (338)
.+|||+|++||||||+++.|++ .|+.+++.|...+.+...+. ..++.-.+...+..|...+.+.+-
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~ 77 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDP 77 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCH
Confidence 4799999999999999999995 35899999988766544321 123333444445566554444321
Q ss_pred -HhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCC
Q 019592 119 -KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (338)
Q Consensus 119 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 197 (338)
.+..-+.+.+|........+.. .....+.+++++|.|+.+ +..+.+.||.+|+|++|.+++++|+++|++.+....
T Consensus 78 ~~~~~Le~IlHP~V~~~~~~~~~--~~~~~~~~~vv~eipLL~-E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea 154 (232)
T PLN02422 78 SKRQLLNRLLAPYISSGIFWEIL--KLWLKGCKVIVLDIPLLF-ETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQA 154 (232)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH--HHHhcCCCEEEEEehhhh-hcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence 0111112233433222211110 011123479999999988 688888999999999999999999999985433322
Q ss_pred HHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHH
Q 019592 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 245 (338)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i 245 (338)
......|+....+ ...||+||.|+++ ...+...++.+
T Consensus 155 ~~Ri~~Q~~~eek----------~~~AD~VI~N~gs-~e~L~~qv~~l 191 (232)
T PLN02422 155 RNRINAQMPLDWK----------RSKADIVIDNSGS-LEDLKQQFQKV 191 (232)
T ss_pred HHHHHHcCChhHH----------HhhCCEEEECCCC-HHHHHHHHHHH
Confidence 2233333332221 6789999998853 33343333333
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.4e-17 Score=139.04 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=108.4
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------- 75 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------- 75 (338)
+..+.|++.. |+|||| ++.+|.+++|.||||||||||++.++++..+.
T Consensus 8 ~v~~~f~~~~vl~~i~L---------------~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~ 72 (248)
T COG1116 8 GVSKSFGGVEVLEDINL---------------SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGP 72 (248)
T ss_pred eeEEEeCceEEecccee---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCC
Confidence 3457786555 799999 99999999999999999999999999988762
Q ss_pred CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc-ccc-cccCcCCccCCCCccccCCCcEE
Q 019592 76 RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 76 ~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
...++.|+ ..+..++..++..++-..-+.+..-..+...+.|+.+.....- .+| .+|++|.+|+..+++.+..++++
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred CEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 34455554 5567777777766544333223333445677888888776543 344 89999999999999999999999
Q ss_pred EEeccccccchHHHhhc
Q 019592 153 LLEGILVFHDSRVRELM 169 (338)
Q Consensus 153 Ildg~~~~~d~~~~~~~ 169 (338)
++||||..+|...+..+
T Consensus 153 LlDEPFgALDalTR~~l 169 (248)
T COG1116 153 LLDEPFGALDALTREEL 169 (248)
T ss_pred EEcCCcchhhHHHHHHH
Confidence 99999999998766544
No 36
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.68 E-value=4.1e-17 Score=141.34 Aligned_cols=170 Identities=16% Similarity=0.230 Sum_probs=100.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------H-HHccccCCCCcccccHHHHHHHHHH-
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------L-ARVHEYNFDHPDAFDTEKLLSSMEK- 119 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~------~-~~~~~~~~~~~~~~~~~~l~~~l~~- 119 (338)
+.+|||+|.+||||||+++.|.+.+ |+.+++.|...+++...+ . ..++.......+..|...+.+.+-.
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~---G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d 77 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEH---HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSD 77 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCC
Confidence 3689999999999999999999865 489999998765443211 1 1233333332345665554443210
Q ss_pred ---hccCCccccccccCcCCccCCCC------c-cccCCCcEEEEeccccccchH-HHhhcCeEEEEecCHHHHHHHHHh
Q 019592 120 ---LRHGQAVDIPNYDFKSYKNNVFP------A-RRVNPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVRLARRIR 188 (338)
Q Consensus 120 ---l~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~vlIldg~~~~~d~~-~~~~~d~~i~l~~~~~~~~~R~~~ 188 (338)
.+.-+.+.+|.....+.+..... . ....+..++++|.|+.+ +.. ....||.+|+|++|.+++++|+++
T Consensus 78 ~~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~-E~~~~~~~~D~iv~V~a~~e~ri~RL~~ 156 (244)
T PTZ00451 78 AQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLF-ETKTFTYFVSASVVVSCSEERQIERLRK 156 (244)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhh-ccCchhhcCCeEEEEECCHHHHHHHHHH
Confidence 00011122232221111111000 0 00123459999999998 455 345789999999999999999999
Q ss_pred hCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCC
Q 019592 189 RDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG 231 (338)
Q Consensus 189 R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~ 231 (338)
|++.+.......+..|+.... .+..||+||.|+
T Consensus 157 R~g~s~eea~~Ri~~Q~~~~e----------k~~~aD~VI~N~ 189 (244)
T PTZ00451 157 RNGFSKEEALQRIGSQMPLEE----------KRRLADYIIEND 189 (244)
T ss_pred cCCCCHHHHHHHHHhCCCHHH----------HHHhCCEEEECC
Confidence 975433322222223332222 268899999887
No 37
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.67 E-value=6e-17 Score=137.38 Aligned_cols=168 Identities=21% Similarity=0.327 Sum_probs=100.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCH------HHHH-HccccCCCCcccccHHHHHHHHH---
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE------QELA-RVHEYNFDHPDAFDTEKLLSSME--- 118 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~------~~~~-~~~~~~~~~~~~~~~~~l~~~l~--- 118 (338)
.+|||+|++||||||+++.|+. .|+.+++.|...+.+.. .+.. .++.-.+...+..|...+.+.+-
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~ 77 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASP 77 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCH
Confidence 5899999999999999999997 35899999975433221 1222 23333333334455544333221
Q ss_pred -HhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCC
Q 019592 119 -KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (338)
Q Consensus 119 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 197 (338)
.+..-+.+.+|.......+... .....+..++++|.|..+ +..+...||.+|||++|.+++++|+..|++. +
T Consensus 78 ~~~~~le~i~hP~v~~~~~~~~~--~~~~~~~~~vv~e~plL~-e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~----s 150 (200)
T PRK14734 78 EQTALLNAITHPRIAEETARRFN--EARAQGAKVAVYDMPLLV-EKGLDRKMDLVVVVDVDVEERVRRLVEKRGL----D 150 (200)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHH--HHHhcCCCEEEEEeecee-EcCccccCCeEEEEECCHHHHHHHHHHcCCC----C
Confidence 0000011222332222211110 011123478999999987 5777788999999999999999999998643 3
Q ss_pred HHHHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
.+.....+.....+.+ ....||++|+|+++
T Consensus 151 ~e~~~~ri~~Q~~~~~------k~~~ad~vI~N~g~ 180 (200)
T PRK14734 151 EDDARRRIAAQIPDDV------RLKAADIVVDNNGT 180 (200)
T ss_pred HHHHHHHHHhcCCHHH------HHHhCCEEEECcCC
Confidence 3444433333222211 15889999988854
No 38
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.67 E-value=1e-16 Score=137.06 Aligned_cols=165 Identities=20% Similarity=0.362 Sum_probs=97.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH------HHH-HccccCCCC--cc--cccHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------ELA-RVHEYNFDH--PD--AFDTEKLL 114 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~------~~~-~~~~~~~~~--~~--~~~~~~l~ 114 (338)
+.+.+|||+|++||||||+++.|.+ .++.+++.|...+.+... ... .++.-.+.. .+ .+|...+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~----~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~ 78 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE----MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIA 78 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH----CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHH
Confidence 4568999999999999999999998 358999998665443321 111 222222211 11 13433322
Q ss_pred ----------HHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHH
Q 019592 115 ----------SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLA 184 (338)
Q Consensus 115 ----------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~ 184 (338)
+.|+.+.+ |.......+.. ......+..++++|+|+.+ +..+...||.+|+|++|.+++++
T Consensus 79 ~~vf~~~~~~~~l~~i~h------p~i~~~~~~~i--~~~~~~~~~vvv~e~pLL~-e~~~~~~~d~ii~V~a~~e~~~~ 149 (208)
T PRK14731 79 QVVFSDPEKLGALNRLIH------PKVFAAFQRAV--DRAARRGKRILVKEAAILF-ESGGDAGLDFIVVVAADTELRLE 149 (208)
T ss_pred HHHhCCHHHHHHHHHHHC------HHHHHHHHHHH--HHHHhcCCCEEEEEeeeee-ecCchhcCCeEEEEECCHHHHHH
Confidence 33333332 33222111111 0111234478999999776 67777889999999999999999
Q ss_pred HHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
|+++|+... .+......... .+. ..+ .+.||++|+|+++
T Consensus 150 Rl~~R~~~s----~e~~~~Ri~~q-~~~-~~~----~~~ad~vI~N~g~ 188 (208)
T PRK14731 150 RAVQRGMGS----REEIRRRIAAQ-WPQ-EKL----IERADYVIYNNGT 188 (208)
T ss_pred HHHHcCCCC----HHHHHHHHHHc-CCh-HHH----HHhCCEEEECCCC
Confidence 999997542 23332222221 111 111 3569999988754
No 39
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.2e-17 Score=145.22 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=114.3
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..|.|+++ +|+++|+ ++..|.+++|.|||||||||++++||++..+
T Consensus 8 ~v~K~yg~~~~l~~i~l---------------~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 8 NVRKSFGSFEVLKDVNL---------------DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred eeEEEcCCceeeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence 445899998 9999999 9999999999999999999999999998875
Q ss_pred --CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCC
Q 019592 75 --QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 75 --~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
+++.++.|+ ..|+.++..++..++-..-..+..-...+..+..+.+...... ....+|.+..||+..+++.+..+
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 467777776 6678889999888766655545544455666666666555433 33479999999998889999999
Q ss_pred cEEEEeccccccchHHHhhc
Q 019592 150 DVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~~~ 169 (338)
+++++|+|++.+|..++..+
T Consensus 153 ~v~L~DEPlSnLDa~lR~~m 172 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLM 172 (338)
T ss_pred CEEEecCchhHhhHHHHHHH
Confidence 99999999998898876544
No 40
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=8e-17 Score=133.13 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=101.2
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCC
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLT 90 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~ 90 (338)
+..|+|++.+ |++||+ ++.+|.+++|+||||||||||+++|..+-.+. |-..++.+.......
T Consensus 7 ~l~K~fg~~~VLkgi~l---------------~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 7 NLSKSFGDKEVLKGISL---------------SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eeeEEeCCeEEecCcce---------------eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhh
Confidence 4468998888 699999 99999999999999999999999999876642 344554433321112
Q ss_pred HHHHHHccccCCCC-----------------------cccccHHHHHHHHHHhccCCcc-ccc-cccCcCCccCCCCccc
Q 019592 91 EQELARVHEYNFDH-----------------------PDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARR 145 (338)
Q Consensus 91 ~~~~~~~~~~~~~~-----------------------~~~~~~~~l~~~l~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~ 145 (338)
.........+.|++ +..-..+...+.|+++...+.. .+| .+|++..+|+..++++
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH
Confidence 22222222233332 2233345566777777766543 344 7999999999998999
Q ss_pred cCCCcEEEEeccccccchHHHhhc
Q 019592 146 VNPSDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~~~ 169 (338)
.-+|+++++|+|++.+||++....
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EV 175 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEV 175 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHH
Confidence 999999999999999999866543
No 41
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.66 E-value=2e-16 Score=128.76 Aligned_cols=179 Identities=17% Similarity=0.316 Sum_probs=124.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
.+..+|||+|++.|||||||+.|.+.++ +..+|++|+||+.-+..+...-+-..|+.+++.+++.+.+.+..+..+..
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~--~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~ 79 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFP--GCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRH 79 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHcc--CCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcc
Confidence 3568999999999999999999999997 57899999999776555544444556888999999999988876655422
Q ss_pred -cccc---cccCcCCccCCC-CccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHH
Q 019592 126 -VDIP---NYDFKSYKNNVF-PARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (338)
Q Consensus 126 -~~~~---~~~~~~~~~~~~-~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~ 200 (338)
...+ ..+......... -........++|+||...+..+.+.+.+|..|++..+.+++.+|+..|-... -.
T Consensus 80 ~~~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~-----p~ 154 (225)
T KOG3308|consen 80 NAPEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYP-----PD 154 (225)
T ss_pred ccchHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCC-----CC
Confidence 1111 111100000000 0223456789999999999888999999999999999999999998875321 11
Q ss_pred HHHHHhhcCcchhhhhccCcCccc--cEEecCC
Q 019592 201 VLDQYSKFVKPAFDDFILPTKKYA--DIIIPRG 231 (338)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~a--D~iI~~~ 231 (338)
....+.-..+|.|..++......+ |....|+
T Consensus 155 ~tgyfd~~~~P~Y~~~~~~~~d~~~h~~~flng 187 (225)
T KOG3308|consen 155 DTGYFDPVVWPHYEKNFEEARDRSRHDSLFLNG 187 (225)
T ss_pred CCccccCccchHHHHHHHHHHhhcccceeeecc
Confidence 112223336788887776644443 6666555
No 42
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=8e-17 Score=138.48 Aligned_cols=174 Identities=16% Similarity=0.208 Sum_probs=125.5
Q ss_pred CCccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 14 SGVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 14 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
..+.|++ -.|+|||| ++.+|.+++|+||||||||||.|.+.++++|.
T Consensus 10 l~v~y~~~~vl~~i~l---------------~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 10 LTVSYGNRPVLEDISL---------------SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred eEEEECCEeeeeccEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccC
Confidence 3566653 46788888 99999999999999999999999999988751
Q ss_pred -CEEEEeCC---CCCCCCCHHHHHHcccc----CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 76 -RVVLVNQD---SFYHNLTEQELARVHEY----NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 76 -~~~~l~~D---~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
.+.|++|- ++--+.+..+...++.+ .|..+..-|.+.+.+.|+.....+.. .+..+|.++.+|+..+++.
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 36677773 22345667776666543 24455666778888999888776543 5568999999999888999
Q ss_pred cCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCcccc
Q 019592 146 VNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 225 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD 225 (338)
+.+++++++|||+.+.|+.... .+.+++++-..+ |.++..+.+..... .+++|
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~--------------~i~~lL~~l~~e-g~tIl~vtHDL~~v------------~~~~D 207 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQK--------------EIYDLLKELRQE-GKTVLMVTHDLGLV------------MAYFD 207 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHH--------------HHHHHHHHHHHC-CCEEEEEeCCcHHh------------HhhCC
Confidence 9999999999999998765433 333445443223 66666666554442 47788
Q ss_pred EEec
Q 019592 226 IIIP 229 (338)
Q Consensus 226 ~iI~ 229 (338)
-||.
T Consensus 208 ~vi~ 211 (254)
T COG1121 208 RVIC 211 (254)
T ss_pred EEEE
Confidence 7665
No 43
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.65 E-value=6.4e-17 Score=131.61 Aligned_cols=169 Identities=20% Similarity=0.322 Sum_probs=112.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH-----------------------HHHHccccCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ-----------------------ELARVHEYNFDH 104 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~-----------------------~~~~~~~~~~~~ 104 (338)
+.++|++|.+||||||+++.+.+ .|+.+++.|...+..... ..+.++...|++
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~----~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~ 76 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKA----LGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSD 76 (225)
T ss_pred CeEEEeecccccChHHHHHHHHH----cCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCC
Confidence 47999999999999999999985 468899888654322111 112233333333
Q ss_pred cccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHH
Q 019592 105 PDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLA 184 (338)
Q Consensus 105 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~ 184 (338)
|+ ..+.|+.+ ..|.....+.+.. ....+.+.+++++|-|++| +..+.+.+..+|.|.||.+..++
T Consensus 77 ~~------~r~~Ln~I------thP~Ir~em~ke~--~~~~l~G~r~ivlDiPLLF-E~~~~~~~~~tvvV~cd~~~Ql~ 141 (225)
T KOG3220|consen 77 PK------KRQALNKI------THPAIRKEMFKEI--LKLLLRGYRVIVLDIPLLF-EAKLLKICHKTVVVTCDEELQLE 141 (225)
T ss_pred HH------HHHHHHhc------ccHHHHHHHHHHH--HHHHhcCCeEEEEechHHH-HHhHHhheeeEEEEEECcHHHHH
Confidence 32 22333332 3355554444432 2334578999999999999 67888999999999999999999
Q ss_pred HHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
|+++||..++..+......|+.-..+ .+.||+||+|+++. ..+.+.+..+.
T Consensus 142 Rl~~Rd~lse~dAe~Rl~sQmp~~~k----------~~~a~~Vi~Nng~~-~~l~~qv~~v~ 192 (225)
T KOG3220|consen 142 RLVERDELSEEDAENRLQSQMPLEKK----------CELADVVIDNNGSL-EDLYEQVEKVL 192 (225)
T ss_pred HHHHhccccHHHHHHHHHhcCCHHHH----------HHhhheeecCCCCh-HHHHHHHHHHH
Confidence 99999966555444444445544433 68999999988653 34444444443
No 44
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.65 E-value=1.3e-16 Score=134.25 Aligned_cols=173 Identities=24% Similarity=0.339 Sum_probs=104.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH-------HHHccccCCCCcccccHHHHHH-----
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKLLS----- 115 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~l~~----- 115 (338)
+.+|||+|.+||||||+++.+++ + |+.++++|.+.+++.... ...++.-..+..+.++...+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~---G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~ 77 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L---GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFND 77 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c---CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCC
Confidence 68999999999999999999999 4 489999998776443211 1222222221122233333322
Q ss_pred -----HHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhC
Q 019592 116 -----SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (338)
Q Consensus 116 -----~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 190 (338)
+|+.+.+ |.....+. . ........++++|-|+.+ +......||.+|.|+||++++++|+++|+
T Consensus 78 ~~~~~~Le~i~h------Pli~~~~~-~----~~~~~~~~~~~~eiplL~-e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~ 145 (201)
T COG0237 78 PEARLKLEKILH------PLIRAEIK-V----VIDGARSPYVVLEIPLLF-EAGGEKYFDKVIVVYAPPEIRLERLMKRD 145 (201)
T ss_pred HHHHHHHHHhhh------HHHHHHHH-H----HHHHhhCCceEEEchHHH-hccccccCCEEEEEECCHHHHHHHHHhcC
Confidence 2222222 32211111 0 111122238999999977 55555669999999999999999999998
Q ss_pred ccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
...++........|.....+ ...||+|+.|++......+++.+.++
T Consensus 146 ~~~~e~~~~~~~~Q~~~~ek----------~~~ad~vi~n~~~i~~l~~~i~~~~~ 191 (201)
T COG0237 146 GLDEEDAEARLASQRDLEEK----------LALADVVIDNDGSIENLLEQIEKLLK 191 (201)
T ss_pred CCCHHHHHHHHHhcCCHHHH----------HhhcCChhhcCCCHHHHHHHHHHHHH
Confidence 55444333333344333332 58999999988665544444444433
No 45
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.64 E-value=4.6e-15 Score=135.30 Aligned_cols=171 Identities=20% Similarity=0.332 Sum_probs=114.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHHccccC--------CCCcccccHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYN--------FDHPDAFDTEKLL 114 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~l~ 114 (338)
..++.+|||+|++|||||||++.|.+.+.+. .+..++.|+|| ++..+...+.... -+.|..+|.....
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY--Lt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~ 286 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY--LTAEGQAELRERNPGNALLELRGNAGSHDLQFSV 286 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc--CChHHHHHHHhhCccchhhcccCCCccccHhhHH
Confidence 3468999999999999999999999988643 47889999999 5555444332111 1346788887777
Q ss_pred HHHHHh----ccCCccccccccCcCCc----cCCCCcc--ccCCCcEEEEeccccccchH--------------------
Q 019592 115 SSMEKL----RHGQAVDIPNYDFKSYK----NNVFPAR--RVNPSDVILLEGILVFHDSR-------------------- 164 (338)
Q Consensus 115 ~~l~~l----~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~vlIldg~~~~~d~~-------------------- 164 (338)
+.+..+ +.+..+.+|.|++..+. |.....+ ...+.+|||+|||+.+..+.
T Consensus 287 e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~ 366 (460)
T PLN03046 287 ETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLE 366 (460)
T ss_pred HHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHH
Confidence 777766 56788999999999965 4322222 23677999999999887531
Q ss_pred -----HHhhcCeEEEEecC-HHHHHHHHHhhCcccc-----CCCHHHHHHHHhhcCcchhhhhcc
Q 019592 165 -----VRELMNMKIFVDTD-ADVRLARRIRRDTVEK-----GRDIATVLDQYSKFVKPAFDDFIL 218 (338)
Q Consensus 165 -----~~~~~d~~i~l~~~-~~~~~~R~~~R~~~~~-----~~~~~~~~~~~~~~~~p~~~~~i~ 218 (338)
+.+.+|..|++.++ .+..++++.++....+ | ....-...+.+...|.|+.|..
T Consensus 367 ~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~G-MsdeqV~~FV~~YmPaY~~y~~ 430 (460)
T PLN03046 367 AYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPG-MSDEEVMDFVSRYLPAYKAYLP 430 (460)
T ss_pred HHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHhhhHHHHHHH
Confidence 11235666777765 4777777765543211 2 2233344455556777776653
No 46
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.63 E-value=7.3e-17 Score=139.44 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=96.5
Q ss_pred Cccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 019592 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (338)
Q Consensus 15 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------ 75 (338)
...|++.. ++|||| ++++|.+++|.||||||||||+|+|++.++|.
T Consensus 9 s~~y~~~~il~~ls~---------------~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 9 SFGYGGKPILDDLSF---------------SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73 (258)
T ss_pred EEEECCeeEEecceE---------------EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHH
Confidence 34554444 688888 99999999999999999999999999999862
Q ss_pred ---CEEEEeCCCC-CCCCCHHHHHHccccC----CCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 76 ---RVVLVNQDSF-YHNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 76 ---~~~~l~~D~~-~~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
.+.+++|... ...++..+.-.++.+. |..+..-|.+...+.|+.+...... .+..+|.+..+++..+++.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH
Confidence 3455555422 2234444444444432 3333445556677777776655433 4567888899988888888
Q ss_pred cCCCcEEEEeccccccchH
Q 019592 146 VNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~ 164 (338)
+.+++++++|||++++|..
T Consensus 154 aQ~~~iLLLDEPTs~LDi~ 172 (258)
T COG1120 154 AQETPILLLDEPTSHLDIA 172 (258)
T ss_pred hcCCCEEEeCCCccccCHH
Confidence 8999999999999998753
No 47
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=8.3e-16 Score=129.10 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=96.9
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS------ 84 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~------ 84 (338)
...+.|++.. ++||+| .+++|.+.+|.|+|||||||++|.+.+++.|. |-..+...+
T Consensus 13 ~v~~~fG~~~Ild~v~l---------------~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 13 GVTKSFGDRVILDGVDL---------------DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred eeeeecCCEEEecCcee---------------eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH
Confidence 3467787777 599999 99999999999999999999999999999872 233333333
Q ss_pred ------------------CCCCCCHHHHHHccccCC-CCcccccHHHHHHHHHHhccCCcc--ccc-cccCcCCccCCCC
Q 019592 85 ------------------FYHNLTEQELARVHEYNF-DHPDAFDTEKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFP 142 (338)
Q Consensus 85 ------------------~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~~~--~~~-~~~~~~~~~~~~~ 142 (338)
.+..++..++-.+.-+.+ ..|+..-.+.....|+.......+ .+| ++|.+|.+|...+
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA 157 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH
Confidence 233333333322211111 112223333334445554444331 334 8999999999888
Q ss_pred ccccCCCcEEEEeccccccchHHHhhcC
Q 019592 143 ARRVNPSDVILLEGILVFHDSRVRELMN 170 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~~~~~~d 170 (338)
++.+-+|+++++|||++++||-....+|
T Consensus 158 RAialdPell~~DEPtsGLDPI~a~~~~ 185 (263)
T COG1127 158 RAIALDPELLFLDEPTSGLDPISAGVID 185 (263)
T ss_pred HHHhcCCCEEEecCCCCCCCcchHHHHH
Confidence 8888999999999999999996554443
No 48
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.62 E-value=4e-16 Score=140.74 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=111.7
Q ss_pred hcCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----------------
Q 019592 12 ASSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------- 74 (338)
Q Consensus 12 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------- 74 (338)
.+..|+|+++. |+|||| .+.+|.++++.|||||||||++++||++..|
T Consensus 9 ~~v~k~yg~~~av~~isl---------------~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 9 RNVSKSFGDFTAVDDISL---------------DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP 73 (352)
T ss_pred EeeeeecCCeeEEeccee---------------eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC
Confidence 34578898555 799999 9999999999999999999999999998776
Q ss_pred ---CCEEEEeCC-CCCCCCCHHHHHHccccCCC-CcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccC
Q 019592 75 ---QRVVLVNQD-SFYHNLTEQELARVHEYNFD-HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 75 ---~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (338)
+++.++.|+ ..++.++..++.+++-..-. .+......+..+.++.+...... ..-.+|.++.+|+..+++++.
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~ 153 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP 153 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc
Confidence 346666776 55688888888777655222 22233345666777776665432 334799999999999999999
Q ss_pred CCcEEEEeccccccchHHHhhc
Q 019592 148 PSDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~~~ 169 (338)
.++++++|+|++.+|..++..+
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~m 175 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQM 175 (352)
T ss_pred CcchhhhcCcccchhHHHHHHH
Confidence 9999999999999998887655
No 49
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.62 E-value=1.7e-16 Score=143.62 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=100.7
Q ss_pred hcCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q 019592 12 ASSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------- 75 (338)
Q Consensus 12 ~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------- 75 (338)
.+..+.|++. .|+|||| ++++|.++||.|||||||||++++|++.+.+.
T Consensus 11 ~~l~k~~~~~~~l~~vsl---------------~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 11 RNVEKRYGDKLVVDGLSF---------------HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA 75 (306)
T ss_pred EeEEEEECCeEEEecceE---------------EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch
Confidence 3446777654 4799999 99999999999999999999999999988751
Q ss_pred -----CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccC
Q 019592 76 -----RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 76 -----~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 147 (338)
.+.++.++ .++..++..++..+....+..+.........+.++.+..... .....+|.++.+++..+.+.+.
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 35666666 344566776665432222222211112334455665554432 2445799999999888888899
Q ss_pred CCcEEEEeccccccchHHHhh
Q 019592 148 PSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~~ 168 (338)
+++++++|+|+.++|+..+..
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~ 176 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHL 176 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHH
Confidence 999999999999999875543
No 50
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.61 E-value=1.2e-15 Score=128.91 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=96.9
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC--------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ-------- 82 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~-------- 82 (338)
+.+|.|++.. ++|+|| +++.+.++++.|||||||||+++++.+++.|. |-..++.
T Consensus 6 nvsk~y~~~~av~~v~l---------------~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 6 NVSKRYGNKKAVDDVNL---------------TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDP 70 (309)
T ss_pred eeehhcCCceeeeeeeE---------------EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCH
Confidence 4567886665 799999 99999999999999999999999999998862 2222222
Q ss_pred -------------CCCCCCCCHHHHHHccccCCCCcccccH----HHHHHHHHHhccCCc-c--ccc-cccCcCCccCCC
Q 019592 83 -------------DSFYHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQA-V--DIP-NYDFKSYKNNVF 141 (338)
Q Consensus 83 -------------D~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~~~~~-~--~~~-~~~~~~~~~~~~ 141 (338)
-..++.++..++....-..- .|+. ++..+.+..+..... . .+| .+|++..+|+..
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~----~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv 146 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL----GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGV 146 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc----CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHH
Confidence 23445555555443221111 2333 344455655555431 1 333 799999999888
Q ss_pred CccccCCCcEEEEeccccccchHHHhh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+++.+..++++++|+||..+||-.++.
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~ 173 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQ 173 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHH
Confidence 888899999999999999999976654
No 51
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.61 E-value=2.8e-15 Score=121.40 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=115.8
Q ss_pred Cccc-ccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------------------
Q 019592 15 GVHF-SGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------------ 74 (338)
Q Consensus 15 ~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------------------ 74 (338)
.|.| ++. .|+|||| .++++..+.|+||||||||||+|.|.....|
T Consensus 8 ~k~Y~~g~~aL~~vs~---------------~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 8 SKAYPGGREALRDVSF---------------HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR 72 (223)
T ss_pred hhhcCCCchhhhCceE---------------eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccc
Confidence 4555 444 5788888 9999999999999999999999999988765
Q ss_pred ------CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 75 ------QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 75 ------~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
+.+.++.|| ......+..++.++.-..-+.+..--..+..+.|+........ ..+.+|.+..+|+..+++.
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 245666676 3445666667666555545555555556677788877766543 4458999999999989999
Q ss_pred cCCCcEEEEeccccccchHHHhh----------cCeEEEEecCHHHHHHHHHhh
Q 019592 146 VNPSDVILLEGILVFHDSRVREL----------MNMKIFVDTDADVRLARRIRR 189 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~~----------~d~~i~l~~~~~~~~~R~~~R 189 (338)
+.+|.+++.|+|+..+||..... ....|.+.+-......++.+|
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCc
Confidence 99999999999999999864432 124555555555554444333
No 52
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.60 E-value=3e-16 Score=143.69 Aligned_cols=142 Identities=17% Similarity=0.169 Sum_probs=99.6
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..+.|++. .|+|||| ++++|.++||+|||||||||++++|++.+.|
T Consensus 46 nl~k~y~~~~~l~~is~---------------~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 46 GVSKSYGDKAVVNGLSF---------------TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110 (340)
T ss_pred EEEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchH
Confidence 445667655 4788888 9999999999999999999999999998875
Q ss_pred ---CCEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC--ccccccccCcCCccCCCCccccCC
Q 019592 75 ---QRVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 75 ---~~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
.++.++.++. ++..++..++..+....+..+..-......+.++.+.... ......+|.++.+++..+.+.+.+
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 1355666653 4456676666543222222211112233445555555443 234457999999998888888999
Q ss_pred CcEEEEeccccccchHHHhhc
Q 019592 149 SDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~~~ 169 (338)
++++|+|+|++++|+..+..+
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l 211 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLI 211 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHH
Confidence 999999999999998765543
No 53
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=9e-17 Score=136.94 Aligned_cols=182 Identities=16% Similarity=0.224 Sum_probs=104.8
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE-EEEeCCCCCCCCCHHHHHH---
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV-VLVNQDSFYHNLTEQELAR--- 96 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~-~~l~~D~~~~~l~~~~~~~--- 96 (338)
++.|||| ++++|.++|+.|+|||||||++|+|.+++.|. |. .+...+.|- ...+...
T Consensus 39 AVqdisf---------------~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~---~~~~~~~~~~ 100 (325)
T COG4586 39 AVQDISF---------------EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR---RREEYLRSIG 100 (325)
T ss_pred hhheeee---------------ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch---hHHHHHHHHH
Confidence 5899999 99999999999999999999999999988763 22 222233332 1111111
Q ss_pred --cc---ccCCCCc---------------ccccHHHHHHHHHHhccCCccccc--cccCcCCccCCCCccccCCCcEEEE
Q 019592 97 --VH---EYNFDHP---------------DAFDTEKLLSSMEKLRHGQAVDIP--NYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 97 --~~---~~~~~~~---------------~~~~~~~l~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
++ ...|+.| +..-.+.+....+.+.....+..| .+|.+...+...+.+++++++++++
T Consensus 101 ~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfL 180 (325)
T COG4586 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFL 180 (325)
T ss_pred HHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 11 1123333 222222333333444445445555 4555555555667778899999999
Q ss_pred eccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCc
Q 019592 155 EGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (338)
Q Consensus 155 dg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (338)
|+|+.++|. ....++++.++--...++.++.-..+.+.+. .+.||.|+..+ .+
T Consensus 181 DEpTvgLDV--------------~aq~~ir~Flke~n~~~~aTVllTTH~~~di------------~~lc~rv~~I~-~G 233 (325)
T COG4586 181 DEPTVGLDV--------------NAQANIREFLKEYNEERQATVLLTTHIFDDI------------ATLCDRVLLID-QG 233 (325)
T ss_pred cCCccCcch--------------hHHHHHHHHHHHHHHhhCceEEEEecchhhH------------HHhhhheEEee-CC
Confidence 999999854 3444444554433333444444333433332 37777665433 22
Q ss_pred HHHHHHHHHHHHHH
Q 019592 235 HVAIDLIVQHIRTK 248 (338)
Q Consensus 235 ~~~~~~~~~~i~~~ 248 (338)
....+.-+..++..
T Consensus 234 qlv~dg~l~~l~~~ 247 (325)
T COG4586 234 QLVFDGTLAQLQEQ 247 (325)
T ss_pred cEeecccHHHHHHH
Confidence 33333344444443
No 54
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.59 E-value=9.4e-16 Score=126.66 Aligned_cols=77 Identities=29% Similarity=0.461 Sum_probs=71.3
Q ss_pred CcccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 260 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 260 ~~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
+++++.| |+++++++++||++|.+.+||++.++++++|.||+.+++|+++.+|+||.| +++|..+. +++|+||||||
T Consensus 3 ~v~vi~h-pli~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~-~~~~~~~~~~~i~~V~ILRA 80 (210)
T COG0035 3 NVYVIDH-PLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLG-PTEGVQIAGKKIVIVPILRA 80 (210)
T ss_pred ceEEeCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCc-ceeeeeecCCcEEEEEEeec
Confidence 4556654 999999999999999999999999999999999999999999999999999 88899997 55999999998
No 55
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=3e-15 Score=129.88 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=107.8
Q ss_pred hcCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----------------
Q 019592 12 ASSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------- 74 (338)
Q Consensus 12 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------- 74 (338)
.+..++|+.+. ++||++ .++.+.++++.|||||||||++++||++..|
T Consensus 6 ~~~~~~~~~~~a~~di~l---------------~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 6 NNVKKRFGAFGALDDISL---------------DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS 70 (345)
T ss_pred hhhhhhccccccccccee---------------eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh
Confidence 34568888887 689999 9999999999999999999999999999876
Q ss_pred ------CCEEEEeCC-CCCCCCCHHHHHHccccCC-CCcc-cccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCc
Q 019592 75 ------QRVVLVNQD-SFYHNLTEQELARVHEYNF-DHPD-AFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 75 ------~~~~~l~~D-~~~~~l~~~~~~~~~~~~~-~~~~-~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~ 143 (338)
+++.++-|+ ..++.++..++.+++-..- ..|. .-...+..+.|+......- .+...+|.+..+|+..++
T Consensus 71 ~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALAR 150 (345)
T COG1118 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALAR 150 (345)
T ss_pred ccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHH
Confidence 245555555 3456777777766654222 2232 2334556666666655442 344489999999998888
Q ss_pred cccCCCcEEEEeccccccchHHHhhc
Q 019592 144 RRVNPSDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~~~~ 169 (338)
+....++++++|+|+..+|..+++.+
T Consensus 151 ALA~eP~vLLLDEPf~ALDa~vr~~l 176 (345)
T COG1118 151 ALAVEPKVLLLDEPFGALDAKVRKEL 176 (345)
T ss_pred HhhcCCCeEeecCCchhhhHHHHHHH
Confidence 88899999999999999999877654
No 56
>PLN02796 D-glycerate 3-kinase
Probab=99.59 E-value=4.1e-14 Score=127.23 Aligned_cols=169 Identities=23% Similarity=0.394 Sum_probs=112.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHHccccC--------CCCcccccHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYN--------FDHPDAFDTEKLLS 115 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~l~~ 115 (338)
.++.+|||+|++||||||+++.|.+.+.+. .+..++.|+|| ++..+...+.... -+.|.++|...+.+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY--Lt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e 175 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY--LTAADQAKLAEANPGNALLELRGNAGSHDLALGVE 175 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc--cchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHH
Confidence 568999999999999999999999999754 36889999999 4444433332211 14477899999999
Q ss_pred HHHHhc----cCCccccccccCcCCc----cCCCCc-cc-cCCCcEEEEeccccccch----------------------
Q 019592 116 SMEKLR----HGQAVDIPNYDFKSYK----NNVFPA-RR-VNPSDVILLEGILVFHDS---------------------- 163 (338)
Q Consensus 116 ~l~~l~----~~~~~~~~~~~~~~~~----~~~~~~-~~-~~~~~vlIldg~~~~~d~---------------------- 163 (338)
.+..++ .+..+..|.|++..+. |..... .. ..+.+|||+||++.+..+
T Consensus 176 ~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~ 255 (347)
T PLN02796 176 TLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEA 255 (347)
T ss_pred HHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHH
Confidence 888887 5678899999999965 432211 12 257799999999998754
Q ss_pred ---HHHhhcCeEEEEecC-HHHHHHHHHhhCc-----cccCCCHHHHHHHHhhcCcchhhhhc
Q 019592 164 ---RVRELMNMKIFVDTD-ADVRLARRIRRDT-----VEKGRDIATVLDQYSKFVKPAFDDFI 217 (338)
Q Consensus 164 ---~~~~~~d~~i~l~~~-~~~~~~R~~~R~~-----~~~~~~~~~~~~~~~~~~~p~~~~~i 217 (338)
.+.+.+|..|.++++ .+...+++.+... ...|- ...-...+.+...|.|+.|.
T Consensus 256 y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gM-sde~v~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 256 YYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGM-SDEEVADFVSRYMPAYKAYL 317 (347)
T ss_pred HHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 122246777787764 5555555543221 11122 22223344444566666663
No 57
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.58 E-value=2e-15 Score=140.82 Aligned_cols=181 Identities=19% Similarity=0.253 Sum_probs=104.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------H-HHccccCCCCcccccHHHHHHHHHH--
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------L-ARVHEYNFDHPDAFDTEKLLSSMEK-- 119 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~------~-~~~~~~~~~~~~~~~~~~l~~~l~~-- 119 (338)
..|||+|++||||||+++.|++ + |+.+++.|...+++.... . ..++.-.++..+.+|...+.+.+-.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~---G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~ 77 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L---GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADD 77 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCH
Confidence 5799999999999999999998 3 589999998765533221 1 2233333333455665554443211
Q ss_pred --hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCC
Q 019592 120 --LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (338)
Q Consensus 120 --l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 197 (338)
...-..+..|.......+. .....+..+++.|.++.+ +..+...||.+|||++|.+++++|++.|++......
T Consensus 78 ~~~~~le~i~hP~I~~~i~~~----i~~~~~~~vvv~eipLL~-E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a 152 (395)
T PRK03333 78 EARAVLNGIVHPLVGARRAEL----IAAAPEDAVVVEDIPLLV-ESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADA 152 (395)
T ss_pred HHHHHHHHhhhHHHHHHHHHH----HHhcCCCCEEEEEeeeee-cCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHH
Confidence 0000112223222111111 011123456666666655 678888999999999999999999988654332222
Q ss_pred HHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHH
Q 019592 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
...+..|+.... ..+.||++|+|+++.......+.+.++..
T Consensus 153 ~~ri~~Q~~~e~----------k~~~AD~vIdN~~s~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 153 RARIAAQASDEQ----------RRAVADVWLDNSGTPDELVEAVRALWADR 193 (395)
T ss_pred HHHHHhcCChHH----------HHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 222222222111 26789999998865443334444444433
No 58
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.57 E-value=6.6e-16 Score=139.78 Aligned_cols=136 Identities=24% Similarity=0.283 Sum_probs=93.1
Q ss_pred ccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------
Q 019592 17 HFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------ 76 (338)
Q Consensus 17 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------------ 76 (338)
.|++. .|+|+|| ++++|.++||.|+||||||||+++|++.+.+. |
T Consensus 2 ~y~~~~~l~~vs~---------------~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 66 (302)
T TIGR01188 2 VYGDFKAVDGVNF---------------KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66 (302)
T ss_pred eeCCeeEEeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHh
Confidence 45443 5899999 99999999999999999999999999988752 1
Q ss_pred -EEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEE
Q 019592 77 -VVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 77 -~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
+.++.++ .++..++..++..+....++.+.........+.++.+..... .....+|.++.+++..+.+.+.+++++
T Consensus 67 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 146 (302)
T TIGR01188 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVL 146 (302)
T ss_pred hcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3444444 233445555544332211211111112334556666655432 234478999999988888889999999
Q ss_pred EEeccccccchHHHh
Q 019592 153 LLEGILVFHDSRVRE 167 (338)
Q Consensus 153 Ildg~~~~~d~~~~~ 167 (338)
|+|+|+.++|+..+.
T Consensus 147 lLDEPt~gLD~~~~~ 161 (302)
T TIGR01188 147 FLDEPTTGLDPRTRR 161 (302)
T ss_pred EEeCCCcCCCHHHHH
Confidence 999999999987544
No 59
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.57 E-value=1.2e-15 Score=128.70 Aligned_cols=167 Identities=21% Similarity=0.297 Sum_probs=99.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------H-HHccccCCCCcccccHHHHHHHHH----
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------L-ARVHEYNFDHPDAFDTEKLLSSME---- 118 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~------~-~~~~~~~~~~~~~~~~~~l~~~l~---- 118 (338)
+|||+|.+||||||+++.|++..+ +.+++.|.+.+.+.... . ..++.-.+...+..+...+.+.+-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~ 77 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH---FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPE 77 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC---CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHH
Confidence 589999999999999999998643 78999998764433221 1 123332333334455444433221
Q ss_pred HhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCH
Q 019592 119 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (338)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~ 198 (338)
.+..-..+..|.......+.+. .......+++++.|..+ +..+...||.++||+++.+++++|+++|++. +.
T Consensus 78 ~~~~le~ilhP~i~~~i~~~i~---~~~~~~~~vvi~~pll~-e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~----s~ 149 (188)
T TIGR00152 78 ELKWLNNLLHPLIREWMKKLLA---QFQSKLAYVLLDVPLLF-ENKLRSLCDRVIVVDVSPQLQLERLMQRDNL----TE 149 (188)
T ss_pred HHHHHHHhhCHHHHHHHHHHHH---HhhcCCCEEEEEchHhh-hCCcHHhCCEEEEEECCHHHHHHHHHHcCCC----CH
Confidence 0000012223333222222210 01112358999999887 4577889999999999999999999999843 33
Q ss_pred HHHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
+.....+.... +.+ .....||++|.|+++
T Consensus 150 ~~~~~r~~~q~-~~~-----~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 150 EEVQKRLASQM-DIE-----ERLARADDVIDNSAT 178 (188)
T ss_pred HHHHHHHHhcC-CHH-----HHHHhCCEEEECCCC
Confidence 44444333322 111 125789999988853
No 60
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.56 E-value=1.2e-15 Score=150.50 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=110.7
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~ 77 (338)
+.+.++||+|+|..+.++.+.....+++.|..|+|+|.||||||||+|.|.+.+.| +.+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 67889999999999999999999999999999999999999999999999999887 368
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHH---HHHHHHHHhccCCcccc----ccccCcCCccCCCCccccCCCc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTE---KLLSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
.++.||++...-+..++..++.....+++-+.-. ...+.+..+..|-...+ ..+|.|.++|+..+++.+.+|+
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 8899998887777777766544322211111100 11122222222211111 2488888999888888999999
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++++||+++.+|+...+
T Consensus 630 ILlLDEaTSaLD~~sE~ 646 (709)
T COG2274 630 ILLLDEATSALDPETEA 646 (709)
T ss_pred EEEEeCcccccCHhHHH
Confidence 99999999999876443
No 61
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.55 E-value=2e-14 Score=136.49 Aligned_cols=200 Identities=20% Similarity=0.236 Sum_probs=118.5
Q ss_pred ccccccc-cCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHH
Q 019592 17 HFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELA 95 (338)
Q Consensus 17 ~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~ 95 (338)
.+++.-| ||+.+ +. .+.+|+|.|++||||||+++.|++.++ +.+++.|.+|+........
T Consensus 268 ~~g~~RLIDN~~~---------------~~-~~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~~a~~~l~ 328 (512)
T PRK13477 268 RCGSTRLIDNVFL---------------MK-RQPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRAVTWLVLQ 328 (512)
T ss_pred EeCCeEEEeeeEe---------------cc-CCcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehHHHHHHHH
Confidence 4455553 77777 66 779999999999999999999999986 8999999999765332222
Q ss_pred HccccCCCCcccccHHHHHHHHHHhcc--------CCccccccccCcCCccC---------------------CCCcccc
Q 019592 96 RVHEYNFDHPDAFDTEKLLSSMEKLRH--------GQAVDIPNYDFKSYKNN---------------------VFPARRV 146 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~l~~--------~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 146 (338)
.++.++++.. +...+..+.. +..+..+.++....-+. ..++. +
T Consensus 329 --~~~~~~~~~~-----l~~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~-~ 400 (512)
T PRK13477 329 --EGIDPQDEEA-----LAELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQR-I 400 (512)
T ss_pred --cCcCCcCHHH-----HHHHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHH-H
Confidence 1223333222 2222221111 11122232222221110 00011 1
Q ss_pred CCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccC---CCHHHHHHHHhhcCcchhhhhccCcCcc
Q 019592 147 NPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG---RDIATVLDQYSKFVKPAFDDFILPTKKY 223 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~---~~~~~~~~~~~~~~~p~~~~~i~~~~~~ 223 (338)
....-+|+||--.+. .+.+..|++|||+++.+++.+|+..+. ..++ .+.+.+...+..+...+..+.+.|....
T Consensus 401 ~~~~~iV~eGRDigt--vV~P~AdlKIfL~As~evRa~RR~~~l-~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a 477 (512)
T PRK13477 401 GEKGGLVAEGRDIGT--HVFPDAELKIFLTASVEERARRRALDL-QAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKA 477 (512)
T ss_pred hhcCCEEEEccccee--EEcCCCCEEEEEECCHHHHHHHHHhhh-hhCCCccCCHHHHHHHHHHHHhhhccccccccccc
Confidence 123348999976652 334557899999999999999987652 1222 2356666777666655566677776665
Q ss_pred -ccEEecCCCCcHHHHHHHHHHHHHHh
Q 019592 224 -ADIIIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 224 -aD~iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
++++|+++.. +++++++.|.+.+
T Consensus 478 ~dai~IDTs~l---sieeVv~~Il~~i 501 (512)
T PRK13477 478 DDAIELITDGL---SIEEVVDKIIDLY 501 (512)
T ss_pred CCeEEEECCCC---CHHHHHHHHHHHH
Confidence 5688876643 3444555554444
No 62
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.54 E-value=6.7e-15 Score=124.81 Aligned_cols=130 Identities=14% Similarity=0.111 Sum_probs=89.8
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------------- 75 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------------- 75 (338)
..|++++| ++++|.+++|.||||||||||+++|..+..|.
T Consensus 19 ~~L~~v~l---------------~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 19 EALKDVNL---------------EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred EecccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 45899999 99999999999999999999999999988762
Q ss_pred CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccc-cccCcCCccCCCCccccCCCcE
Q 019592 76 RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 76 ~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~v 151 (338)
.+.++.|+ .+...++..++..+....-..+.........+.+..+..++.. ..| .+|.++.+|+..+++.+.+|++
T Consensus 84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i 163 (226)
T COG1136 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI 163 (226)
T ss_pred hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe
Confidence 23344443 2334444444443322111111111233444555555555332 334 8999999999999999999999
Q ss_pred EEEeccccccchHH
Q 019592 152 ILLEGILVFHDSRV 165 (338)
Q Consensus 152 lIldg~~~~~d~~~ 165 (338)
++.|+|+..+|...
T Consensus 164 ilADEPTgnLD~~t 177 (226)
T COG1136 164 ILADEPTGNLDSKT 177 (226)
T ss_pred EEeeCccccCChHH
Confidence 99999999888653
No 63
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.8e-14 Score=121.53 Aligned_cols=129 Identities=10% Similarity=0.187 Sum_probs=88.2
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHcccc
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEY 100 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~~ 100 (338)
.|++||| ++.+|.++||.|+||||||||++.|+++..+. |-..++.....+............+
T Consensus 22 ~l~~VS~---------------~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQm 86 (252)
T COG1124 22 ALNNVSL---------------EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQM 86 (252)
T ss_pred hhcceeE---------------EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeE
Confidence 5799999 99999999999999999999999999988762 3344444332221111112222334
Q ss_pred CCCCccc-c---------------------cHHHHHHHHHHhccCCcc--cc-ccccCcCCccCCCCccccCCCcEEEEe
Q 019592 101 NFDHPDA-F---------------------DTEKLLSSMEKLRHGQAV--DI-PNYDFKSYKNNVFPARRVNPSDVILLE 155 (338)
Q Consensus 101 ~~~~~~~-~---------------------~~~~l~~~l~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~vlIld 155 (338)
.|++|.. + ...+..+.+..+...... .. ..+|++..+|+..+++....++++|+|
T Consensus 87 VFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlD 166 (252)
T COG1124 87 VFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILD 166 (252)
T ss_pred EecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEec
Confidence 4544431 0 011244566666655543 22 379999999998888889999999999
Q ss_pred ccccccchHH
Q 019592 156 GILVFHDSRV 165 (338)
Q Consensus 156 g~~~~~d~~~ 165 (338)
||++.+|..+
T Consensus 167 EptSaLD~si 176 (252)
T COG1124 167 EPTSALDVSV 176 (252)
T ss_pred CchhhhcHHH
Confidence 9999988753
No 64
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.51 E-value=6.6e-15 Score=137.14 Aligned_cols=139 Identities=20% Similarity=0.257 Sum_probs=99.4
Q ss_pred CCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 14 SGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 14 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
..+.|++.. |+++|| ++.+|.+++|.||||||||||++.|++.+++.
T Consensus 9 ls~~y~~~~vL~~vs~---------------~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 9 LSVEFGDTTVLDGVDL---------------SVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred EEEEECCEEEEEeeEE---------------EECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHH
Confidence 345665544 699999 99999999999999999999999999988751
Q ss_pred ----CEEEEeCCC-CCCCCCHHHHHHccccC----CCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcc
Q 019592 76 ----RVVLVNQDS-FYHNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 76 ----~~~~l~~D~-~~~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 144 (338)
.+.++.++. ++..++..++..++.+. +......+.+.+.+.++.+...... ....+|.++.+|+..+++
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 245555553 33556666665554321 2211223345566667766654432 345789999999888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++++|+|+.++|+..+.
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~ 176 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQV 176 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHH
Confidence 89999999999999999886443
No 65
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=1.3e-14 Score=124.76 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=89.5
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++|+|| ++++|.+++|+|+||||||||++.|++.+.+. |
T Consensus 7 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 7 SKTYGSVRALDDLSL---------------TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71 (213)
T ss_pred EEEeCCeeeecceeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhh
Confidence 3455443 4799999 99999999999999999999999999987652 2
Q ss_pred --EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcE
Q 019592 77 --VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 77 --~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
+.++.++. ++..++..++..+....+..........+.+.+..+...... ....+|.++.+++..+.+.+.++++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23333332 222334443332221111111111123344556655543322 2346888999998888888899999
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+++|||++++|+....
T Consensus 152 lllDEPt~~LD~~~~~ 167 (213)
T cd03259 152 LLLDEPLSALDAKLRE 167 (213)
T ss_pred EEEcCCcccCCHHHHH
Confidence 9999999999876543
No 66
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1.4e-14 Score=133.41 Aligned_cols=139 Identities=15% Similarity=0.137 Sum_probs=99.4
Q ss_pred CCccc-cc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 14 SGVHF-SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 14 ~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
..+.| ++ ..|+++|| ++++|.+++|.||||||||||+++|++.+.+
T Consensus 9 l~~~~~~~~~~l~~vsl---------------~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 9 VRKSYDGKTQVIKGIDL---------------DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEeCCCCEEEeeeeE---------------EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH
Confidence 34566 44 35789999 9999999999999999999999999998775
Q ss_pred --CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCC
Q 019592 75 --QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 75 --~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.++.++.++ .++..++..++..++......+.......+.+.++.+...... ....+|.++.+|+..+++.+.++
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 235666666 3445677777665543222212111223455666665554322 33479999999998888899999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++++|+|++.+|+..+.
T Consensus 154 ~llLLDEP~s~LD~~~r~ 171 (356)
T PRK11650 154 AVFLFDEPLSNLDAKLRV 171 (356)
T ss_pred CEEEEeCCcccCCHHHHH
Confidence 999999999999986554
No 67
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.50 E-value=1.3e-14 Score=124.67 Aligned_cols=138 Identities=16% Similarity=0.119 Sum_probs=88.1
Q ss_pred Cccccc---ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------
Q 019592 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------- 76 (338)
Q Consensus 15 ~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------------- 76 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 6 ~~~~~~~~~~il~~vs~---------------~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 6 SFSYPDGARPALDDISL---------------TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred EEecCCCCeeeecceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH
Confidence 345544 35799999 99999999999999999999999999987652 2
Q ss_pred ------EEEEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcccc
Q 019592 77 ------VVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 77 ------~~~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++.++. .+..++..++..+....+..........+.+.++.+...... ....+|.++.+++..+++.+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 150 (211)
T cd03225 71 KELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred HHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 23333332 122233333322211111000011122344455555443222 33468888889888888888
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|+|+.++|+....
T Consensus 151 ~~p~llllDEPt~~LD~~~~~ 171 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRR 171 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHH
Confidence 999999999999999876544
No 68
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.50 E-value=1.5e-14 Score=130.92 Aligned_cols=141 Identities=11% Similarity=0.115 Sum_probs=98.4
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
..++|++. .|+|+|| ++++|.++||.|+||||||||+++|++.+.+.
T Consensus 8 l~~~~~~~~~l~~is~---------------~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 8 LTKLYGTQNALDEVSF---------------EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE 72 (301)
T ss_pred EEEEECCEEEEEEeEE---------------EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHH
Confidence 34666544 4799999 99999999999999999999999999987651
Q ss_pred ---CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCC
Q 019592 76 ---RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 76 ---~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.+.++.++. ++..++..++..+....++.+.......+.+.+..+..... .....+|.++.+++..+.+.+.++
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 245555553 44455666654433222322211112345556666655432 234578999999988888889999
Q ss_pred cEEEEeccccccchHHHhhc
Q 019592 150 DVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~~~ 169 (338)
+++|+|+|+.++|+..++.+
T Consensus 153 ~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred CEEEEcCCcccCCHHHHHHH
Confidence 99999999999998755443
No 69
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.50 E-value=1.5e-14 Score=133.15 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=102.0
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..+.|+++. |+++|| ++..+.+++|.||||||||||+++|++.+.+
T Consensus 9 ~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 9 NIRKRFGAFTALKDISL---------------SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEeCCeEEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH
Confidence 4456776654 799999 9999999999999999999999999998775
Q ss_pred --CCEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCC
Q 019592 75 --QRVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 75 --~~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
+++.++.++. ++..++..++..++......+.......+.+.++.+..... .....+|.++.+|+..+++.+.++
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2355666663 44567777766554322221222223455666776665442 233478999999988888899999
Q ss_pred cEEEEeccccccchHHHhh
Q 019592 150 DVILLEGILVFHDSRVREL 168 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~~ 168 (338)
+++++|+|++.+|+..+..
T Consensus 154 ~llLLDEP~s~LD~~~r~~ 172 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREH 172 (353)
T ss_pred CEEEEcCCcccCCHHHHHH
Confidence 9999999999998865543
No 70
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.50 E-value=1.2e-14 Score=125.43 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=85.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------E
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-----------------------V 77 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-----------------------~ 77 (338)
.++++|| ++.+|.+++|+|+||||||||++.|++.+++. | +
T Consensus 18 il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 82 (216)
T TIGR00960 18 ALDNLNF---------------HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHI 82 (216)
T ss_pred EEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhc
Confidence 5788888 99999999999999999999999999987652 2 2
Q ss_pred EEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEE
Q 019592 78 VLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 78 ~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
.++.++. ++..++..++..+....+..+.......+.+.++.+...... ....+|.++.+++..+.+.+.+++++++
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLA 162 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333332 222233333332211111111111123344556555543322 2346888888988888888899999999
Q ss_pred eccccccchHHHh
Q 019592 155 EGILVFHDSRVRE 167 (338)
Q Consensus 155 dg~~~~~d~~~~~ 167 (338)
|||++++|+....
T Consensus 163 DEPt~~LD~~~~~ 175 (216)
T TIGR00960 163 DEPTGNLDPELSR 175 (216)
T ss_pred eCCCCcCCHHHHH
Confidence 9999999876544
No 71
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.7e-14 Score=120.88 Aligned_cols=138 Identities=12% Similarity=0.153 Sum_probs=97.0
Q ss_pred Cccc-cccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 15 GVHF-SGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 15 ~~~~-~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
.+.| ++.. |+||+| ++++|.+|+|.|+||||||||+++|.++.++.
T Consensus 10 ~k~yp~~~~aL~~Vnl---------------~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 10 SKTYPGGHQALKDVNL---------------EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK 74 (258)
T ss_pred eeecCCCceeeeeEeE---------------EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH
Confidence 4566 4443 799999 99999999999999999999999999977652
Q ss_pred -------CEEEEeCC-CCCCCCCHHHHHHcccc--------CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCc
Q 019592 76 -------RVVLVNQD-SFYHNLTEQELARVHEY--------NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYK 137 (338)
Q Consensus 76 -------~~~~l~~D-~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~ 137 (338)
.+.++.|+ +....++..++...+.. .|+.+...+.....+.|+++...+.. .-..+|.+..+
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ 154 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH
Confidence 23444443 22233333333222211 13333344556666777777665544 33479999999
Q ss_pred cCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
|+..+++++.++++++.|+|.+.+||...+
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~ 184 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAK 184 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHH
Confidence 999999999999999999999999987544
No 72
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=1.6e-14 Score=132.73 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=100.8
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..+.|+++. |+|+|| ++.++.+++|.||||||||||+++|++.+.+
T Consensus 11 ~l~~~~~~~~~l~~isl---------------~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 11 NITKRFGSNTVIDNLNL---------------TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred eEEEEECCeEEEeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH
Confidence 3456676555 789999 9999999999999999999999999998875
Q ss_pred --CCEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCC
Q 019592 75 --QRVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 75 --~~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.++.++.++. ++..++..++..++...+..+.....+.+.+.++.+..... .....+|.++.+|+..+++.+.++
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2355666663 44566777766554322221222223445556666555432 233478999999988888889999
Q ss_pred cEEEEeccccccchHHHhh
Q 019592 150 DVILLEGILVFHDSRVREL 168 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~~ 168 (338)
+++++|+|++.+|+..+..
T Consensus 156 ~lLLLDEP~s~LD~~~r~~ 174 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRS 174 (351)
T ss_pred CEEEEcCCcccCCHHHHHH
Confidence 9999999999999876544
No 73
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=9.3e-16 Score=125.11 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=103.1
Q ss_pred hcCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----------------
Q 019592 12 ASSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------- 74 (338)
Q Consensus 12 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------- 74 (338)
.+..|+|+... +++||| +++++.++|+.|||||||||..-++.++..+
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl---------------~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP 72 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSL---------------EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP 72 (243)
T ss_pred hhhhHhhCCeeeeeeeeE---------------EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC
Confidence 34468887776 699999 9999999999999999999999998887765
Q ss_pred ------CCEEEEeCC-CCCCCCCHHHHHHcc-ccCCCCcc-cccHHHHHHHHHHhccCCccc--cccccCcCCccCCCCc
Q 019592 75 ------QRVVLVNQD-SFYHNLTEQELARVH-EYNFDHPD-AFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPA 143 (338)
Q Consensus 75 ------~~~~~l~~D-~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~ 143 (338)
.|+.|++|+ +.++.++..++.... .....+.. ......+.+.|+.+....-.. -..+|.+..+|+..++
T Consensus 73 m~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 73 MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred hHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 367788887 566888888765432 22222222 233344566777766554332 2367788888888888
Q ss_pred cccCCCcEEEEeccccccchHH
Q 019592 144 RRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~ 165 (338)
++..+|+++++|+||++.||-.
T Consensus 153 aLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred HHhcCCCEEEecCCccCCCchh
Confidence 8889999999999999998853
No 74
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.50 E-value=7.2e-15 Score=135.51 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=98.0
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC----------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR---------------- 76 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~---------------- 76 (338)
..+.|++. .|+++|| ++..+.+++|.||||||||||+++|++.+.+..
T Consensus 11 l~~~~~~~~~l~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 11 LRVAYGANTVLDDLSL---------------EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEECCeEEEeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC
Confidence 34556543 4788888 999999999999999999999999999876532
Q ss_pred -----EEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCC
Q 019592 77 -----VVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 77 -----~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
+.++.++ .++..++..++..+.......+.......+.+.++.+..... .....+|.++.+|+..+++.+.+
T Consensus 76 ~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 3444554 244556666655443221221222222345566666555432 24457899999999888889999
Q ss_pred CcEEEEeccccccchHHHhhc
Q 019592 149 SDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~~~ 169 (338)
++++++|+|++.+|+..+..+
T Consensus 156 P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred CCEEEEcCccccCCHHHHHHH
Confidence 999999999999998765443
No 75
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.50 E-value=1.9e-14 Score=130.40 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=93.7
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
..+.|++. .|+++|| ++++|.++||.|+||||||||++.|++.+.+.
T Consensus 10 l~~~~~~~~~l~~vsl---------------~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 10 VSKSYGDKVVVNDLSF---------------TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL 74 (303)
T ss_pred EEEEeCCeEEEcceeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHH
Confidence 35666554 4799999 99999999999999999999999999987641
Q ss_pred ---CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCC
Q 019592 76 ---RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 76 ---~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.+.++.++. ++..++..++..+....+..+.......+.+.++.+..... .....+|.++.+++..+.+.+.++
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 234555553 33445555544321111111111111233445555544332 233478999999988888888999
Q ss_pred cEEEEeccccccchHHHhh
Q 019592 150 DVILLEGILVFHDSRVREL 168 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~~ 168 (338)
+++++|+|++++|+..+..
T Consensus 155 ~lllLDEPt~gLD~~~~~~ 173 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHL 173 (303)
T ss_pred CEEEEeCCCcCCCHHHHHH
Confidence 9999999999999875543
No 76
>PLN02541 uracil phosphoribosyltransferase
Probab=99.50 E-value=1.7e-14 Score=124.18 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=68.1
Q ss_pred ccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCC-CCCeeeEEeCCCCceeeeeeeC--CCeeEEEeecC
Q 019592 262 YVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVITPTGAVYTGVDFC--KRLCGVSVIRR 338 (338)
Q Consensus 262 ~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~-l~~~~~~v~tp~~~~~~~~~~~--~~~~~v~ilra 338 (338)
..+.++|+++++++++||++|.+.+||++.+||+++|+||++++ +|+++.+|+||+| .+.+..+. .++|+||||||
T Consensus 34 ~~~~~~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g-~~~~~~~~~~~~i~~V~ILRA 112 (244)
T PLN02541 34 VFVPPHPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMG-VADVEFIDPREPVAVVPILRA 112 (244)
T ss_pred EEecCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCC-eEEEEeecCCCcEEEEeEeCC
Confidence 45667899999999999999999999999999999999999988 9999999999999 55455554 45999999998
No 77
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.50 E-value=1.9e-14 Score=124.24 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=86.2
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------------- 76 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------------- 76 (338)
..++++|| ++++|.+++|+|+||||||||++.|++.+++. |
T Consensus 18 ~il~~~s~---------------~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (218)
T cd03255 18 QALKGVSL---------------SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRR 82 (218)
T ss_pred eEEeeeEE---------------EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhh
Confidence 35788888 99999999999999999999999999987652 2
Q ss_pred -EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 77 -VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 77 -~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
+.++.++. ++..++..++..+...............+.+.++.+...... ....+|.++.+++..+.+.+.+++++
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 162 (218)
T cd03255 83 HIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKII 162 (218)
T ss_pred cEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEE
Confidence 22333331 222334444333221111111111123344556655443322 23468889999888888888999999
Q ss_pred EEeccccccchHHHh
Q 019592 153 LLEGILVFHDSRVRE 167 (338)
Q Consensus 153 Ildg~~~~~d~~~~~ 167 (338)
++|||+.++|+..+.
T Consensus 163 lLDEP~~~LD~~~~~ 177 (218)
T cd03255 163 LADEPTGNLDSETGK 177 (218)
T ss_pred EEcCCcccCCHHHHH
Confidence 999999999876543
No 78
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=8e-14 Score=121.33 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=103.0
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHH---H
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELA---R 96 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~---~ 96 (338)
..|+|||| ++++|.++||.|.||||||||.+++..+-.|. |-.+++.++.. .++..+.. .
T Consensus 20 ~al~~vsL---------------~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~-~l~~~~Lr~~R~ 83 (339)
T COG1135 20 TALDDVSL---------------EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT-ALSEAELRQLRQ 83 (339)
T ss_pred eeeccceE---------------EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecc-cCChHHHHHHHh
Confidence 35799999 99999999999999999999999999877663 44555554322 23333221 1
Q ss_pred ccccCCCC----------------------cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 97 VHEYNFDH----------------------PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 97 ~~~~~~~~----------------------~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
...+.|++ |..--..+..++|+.+...+.. +...+|.+.++|+..+++.+.+|+++
T Consensus 84 ~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iL 163 (339)
T COG1135 84 KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKIL 163 (339)
T ss_pred hccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEE
Confidence 11222332 2222334566677766665443 33479999999999999999999999
Q ss_pred EEeccccccchHH-----------HhhcCeEEEEecCHHHHHHHHHhh
Q 019592 153 LLEGILVFHDSRV-----------RELMNMKIFVDTDADVRLARRIRR 189 (338)
Q Consensus 153 Ildg~~~~~d~~~-----------~~~~d~~i~l~~~~~~~~~R~~~R 189 (338)
+.|++++.+||.. .....+.|.+-+..-...+++-.|
T Consensus 164 L~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~r 211 (339)
T COG1135 164 LCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDR 211 (339)
T ss_pred EecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhh
Confidence 9999999999953 233455665555555444454443
No 79
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.49 E-value=2.3e-13 Score=107.40 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=96.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH---HHHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE---LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
++|.|.|++||||||+++.|++.++ ..+++...+++++.... +..+..+.-.+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~g---l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~--------------------- 56 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLG---LKLVSAGTIFREMARERGMSLEEFSRYAEED--------------------- 56 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhC---CceeeccHHHHHHHHHcCCCHHHHHHHHhcC---------------------
Confidence 3799999999999999999999987 78888776664332211 11111111122
Q ss_pred cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHH
Q 019592 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (338)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (338)
|.++....++. ...+. .+-+|+||-++++ -.+...|++||+.+|.++|.+|+.+|++. +........
T Consensus 57 ---p~iD~~iD~rq---~e~a~-~~nvVlegrLA~W--i~k~~adlkI~L~Apl~vRa~Ria~REgi----~~~~a~~~~ 123 (179)
T COG1102 57 ---PEIDKEIDRRQ---KELAK-EGNVVLEGRLAGW--IVREYADLKIWLKAPLEVRAERIAKREGI----DVDEALAET 123 (179)
T ss_pred ---chhhHHHHHHH---HHHHH-cCCeEEhhhhHHH--HhccccceEEEEeCcHHHHHHHHHHhcCC----CHHHHHHHH
Confidence 22222222221 11122 4568999988875 22357899999999999999999999854 333333332
Q ss_pred hhcC---cchhhhhcc---CcCccccEEecCCCCcHHHHHHHHHHHHHH
Q 019592 206 SKFV---KPAFDDFIL---PTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 206 ~~~~---~p~~~~~i~---~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
..++ +.+|..++. ......|+||+.+..++ +.+...|...
T Consensus 124 ~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~---~~v~~il~~a 169 (179)
T COG1102 124 VEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDP---EEVFLILLDA 169 (179)
T ss_pred HHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCH---HHHHHHHHHH
Confidence 2222 234444432 12466899998765544 4444444433
No 80
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.9e-14 Score=124.51 Aligned_cols=132 Identities=15% Similarity=0.066 Sum_probs=90.1
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------CEEEEeCCC
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------RVVLVNQDS 84 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------~~~~l~~D~ 84 (338)
..++++|| ++++|.+++|+|+||||||||++.|++.+.+. .+.++.++.
T Consensus 18 ~il~~vs~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~ 82 (220)
T cd03293 18 TALEDISL---------------SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQD 82 (220)
T ss_pred EEEeceeE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEeccc
Confidence 35799999 99999999999999999999999999987641 234555553
Q ss_pred -CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEecccccc
Q 019592 85 -FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH 161 (338)
Q Consensus 85 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~ 161 (338)
++..++..++..+....+..+.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|++++
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 83 ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 333355555443322111111111223455566665543322 23468888889888888888999999999999999
Q ss_pred chHHHh
Q 019592 162 DSRVRE 167 (338)
Q Consensus 162 d~~~~~ 167 (338)
|+....
T Consensus 163 D~~~~~ 168 (220)
T cd03293 163 DALTRE 168 (220)
T ss_pred CHHHHH
Confidence 886544
No 81
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=2.2e-14 Score=121.29 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=98.6
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC---------CCCCCCCC
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------DSFYHNLT 90 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~---------D~~~~~l~ 90 (338)
..|+|||| +..+|..+||.|.||||||||++.|++.++|. |-..+.. -.|-++++
T Consensus 41 ~aL~disf---------------~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelT 105 (249)
T COG1134 41 WALKDISF---------------EIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELT 105 (249)
T ss_pred EEecCceE---------------EEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccc
Confidence 34899999 99999999999999999999999999999873 2222222 24567888
Q ss_pred HHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
..++..+.....+.....-.+.+.+.++--..|+.+ ++..||.+|..|+..+.+....++++|+|++++.-|+.+.+.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K 185 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH
Confidence 888876655544433333333444444444445554 445799999999877777778999999999999888887665
Q ss_pred c
Q 019592 169 M 169 (338)
Q Consensus 169 ~ 169 (338)
|
T Consensus 186 ~ 186 (249)
T COG1134 186 C 186 (249)
T ss_pred H
Confidence 4
No 82
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=3.3e-15 Score=126.07 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=96.8
Q ss_pred hcCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC-EEEEeCC------
Q 019592 12 ASSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR-VVLVNQD------ 83 (338)
Q Consensus 12 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~-~~~l~~D------ 83 (338)
.+..++|++++ ++|||| ++.++.+++|+|||||||||+.+.+.+.++|.. -..+...
T Consensus 8 ~~l~k~FGGl~Al~~Vsl---------------~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~ 72 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSL---------------EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP 72 (250)
T ss_pred ccceeecCCEEEEeceeE---------------EEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCC
Confidence 45579999998 799999 999999999999999999999999999999742 2333222
Q ss_pred ----------------CCCCCCCHHHHHHcccc-------CCCCcc-----cccHHHHHHHHHHhccCCccccc--cccC
Q 019592 84 ----------------SFYHNLTEQELARVHEY-------NFDHPD-----AFDTEKLLSSMEKLRHGQAVDIP--NYDF 133 (338)
Q Consensus 84 ----------------~~~~~l~~~~~~~~~~~-------~~~~~~-----~~~~~~l~~~l~~l~~~~~~~~~--~~~~ 133 (338)
..+++++..++...+.. .+..+. ....++..+.|+.+........+ .++.
T Consensus 73 p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Lsy 152 (250)
T COG0411 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSY 152 (250)
T ss_pred HHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCCh
Confidence 23445555554333211 111111 22234455666666665544333 5777
Q ss_pred cCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 134 ~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+..+++..+.+.+.+|+++++|+|.++..+.
T Consensus 153 G~qR~LEIArALa~~P~lLLLDEPaAGln~~ 183 (250)
T COG0411 153 GQQRRLEIARALATQPKLLLLDEPAAGLNPE 183 (250)
T ss_pred hHhHHHHHHHHHhcCCCEEEecCccCCCCHH
Confidence 7777777888888999999999999998765
No 83
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.9e-14 Score=125.49 Aligned_cols=124 Identities=12% Similarity=0.055 Sum_probs=81.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------CEEEEeCCC-CCCCCCHHHHHHc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------------RVVLVNQDS-FYHNLTEQELARV 97 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------------~~~~l~~D~-~~~~l~~~~~~~~ 97 (338)
+++++.+++|+|+||||||||++.|++.+++. .+.++.++. ++..++..++..+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 110 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM 110 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999987641 133444442 2233444444332
Q ss_pred cccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 98 HEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
....+..........+.+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 182 (233)
T PRK11629 111 PLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182 (233)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 21111111111123345566665554322 23468888888888788888999999999999999876543
No 84
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=2.4e-14 Score=123.76 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=89.3
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++|++| ++.++.+++|+|+||||||||+++|++.+++. |
T Consensus 7 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 7 VKKYGDFEAVRGVSF---------------RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71 (220)
T ss_pred EEEECCEEeeeceeE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHH
Confidence 3455444 4799999 99999999999999999999999999987652 2
Q ss_pred ---EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 77 ---VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 77 ---~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
+.++.++. ++..++..++..+....+..........+.+.++.+...... ....+|.++.+++..+.+.+.+++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 23333332 222233333322211111111111122345556665544322 334688899998888888889999
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++++|+|+.++|+....
T Consensus 152 llllDEPt~~LD~~~~~ 168 (220)
T cd03265 152 VLFLDEPTIGLDPQTRA 168 (220)
T ss_pred EEEEcCCccCCCHHHHH
Confidence 99999999999876543
No 85
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=9.5e-14 Score=110.32 Aligned_cols=132 Identities=12% Similarity=0.163 Sum_probs=92.8
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHc
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARV 97 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~ 97 (338)
+..-|+++|| .+.+|..|+|+||||||||||.|+++.+..+. |..++...++ ..+........
T Consensus 15 ~a~il~~isl---------------~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~v-s~~~pea~Rq~ 78 (223)
T COG4619 15 DAKILNNISL---------------SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV-STLKPEAYRQQ 78 (223)
T ss_pred CCeeecceee---------------eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccc-cccChHHHHHH
Confidence 4445799999 99999999999999999999999999988763 4444444432 22222222111
Q ss_pred -----------cccCCCC--------cccccHHHHHHHHHHhccCCcc---ccccccCcCCccCCCCccccCCCcEEEEe
Q 019592 98 -----------HEYNFDH--------PDAFDTEKLLSSMEKLRHGQAV---DIPNYDFKSYKNNVFPARRVNPSDVILLE 155 (338)
Q Consensus 98 -----------~~~~~~~--------~~~~~~~~l~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vlIld 155 (338)
+.-.+++ ....|.+.+.+.|.++..+..+ ....+|++..++....+.+...++++++|
T Consensus 79 VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 79 VSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 1111111 1246778888999998887654 33468888888866656667889999999
Q ss_pred ccccccchHHH
Q 019592 156 GILVFHDSRVR 166 (338)
Q Consensus 156 g~~~~~d~~~~ 166 (338)
++++.+|+...
T Consensus 159 E~TsALD~~nk 169 (223)
T COG4619 159 EITSALDESNK 169 (223)
T ss_pred CchhhcChhhH
Confidence 99999887543
No 86
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=2.5e-14 Score=119.84 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=104.1
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..+.|+..+ |++||| +++++.+++|.|+|||||||+++.|.+..++
T Consensus 8 ~l~~~YG~~~~L~gvsl---------------~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 8 NLSAGYGKIQALRGVSL---------------EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred eEeecccceeEEeeeee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH
Confidence 3457788877 699999 9999999999999999999999999998875
Q ss_pred -----CCEEEEeCC-CCCCCCCHHHHHHccccCCCC--cccccHHHHHHHHHHhccCCccccccccCcCCccCCCCcccc
Q 019592 75 -----QRVVLVNQD-SFYHNLTEQELARVHEYNFDH--PDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 75 -----~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (338)
.++.++++. ..+..++..++..++.+.... ....+.+.+.+.+-.++.-....--.+|.+..+.+..+++.+
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 366777775 567889999988877665432 111113334444433333222233467788888777788889
Q ss_pred CCCcEEEEeccccccchHHHhh
Q 019592 147 NPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~~ 168 (338)
.+|+++++|+|..++.|.+.+.
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~ 174 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEE 174 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHH
Confidence 9999999999999998875443
No 87
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.48 E-value=2.8e-14 Score=132.15 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=98.3
Q ss_pred CCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------------------
Q 019592 14 SGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------------ 74 (338)
Q Consensus 14 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------------------ 74 (338)
..+.|+++. |++++| ++..+.+++|.|+||||||||+++|++.+.+
T Consensus 20 l~~~~~~~~~l~~vsl---------------~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 20 ISKSFDGKEVISNLDL---------------TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred EEEEECCeEEEeeeEE---------------EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 345555544 677777 9999999999999999999999999998875
Q ss_pred -CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 75 -QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 75 -~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
.++.++.++ .++..++..++..++......+..-....+.+.++.+...... ....+|.++.+|+..+++.+.+++
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 235566666 3456667777665433222212211123445566655554322 334789999999888888899999
Q ss_pred EEEEeccccccchHHHhh
Q 019592 151 VILLEGILVFHDSRVREL 168 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~~ 168 (338)
++++|+|++.+|+..+..
T Consensus 165 llLLDEP~s~LD~~~r~~ 182 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQ 182 (375)
T ss_pred EEEEeCCCCcCCHHHHHH
Confidence 999999999999865543
No 88
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.8e-14 Score=132.36 Aligned_cols=139 Identities=15% Similarity=0.071 Sum_probs=97.6
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
..+.|++. .|+++|| ++.++.+++|.|+||||||||+++|++.+.+.
T Consensus 9 l~~~~~~~~vl~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 9 VTKAYGDVVISKDINL---------------DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEeCCeEEEeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh
Confidence 34666554 4799999 99999999999999999999999999987651
Q ss_pred --CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 76 --RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 76 --~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
++.++.++. ++..++..++..+.......+.......+.+.++.+...... ....+|.++.+++..+++.+.+++
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 245666653 344566666654432211111111223455666666554322 334789999999888888899999
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++++|+|++.+|+..+.
T Consensus 154 lLLLDEPts~LD~~~~~ 170 (369)
T PRK11000 154 VFLLDEPLSNLDAALRV 170 (369)
T ss_pred EEEEeCCcccCCHHHHH
Confidence 99999999999986543
No 89
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.48 E-value=3.1e-14 Score=131.05 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=93.3
Q ss_pred cccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q 019592 17 HFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------- 75 (338)
Q Consensus 17 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------- 75 (338)
.|++ ..++|+|| ++++|.+++|.|+||||||||+++|++.+.+.
T Consensus 2 ~~~~~~~l~~vs~---------------~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~ 66 (363)
T TIGR01186 2 KTGGKKGVNDADL---------------AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66 (363)
T ss_pred ccCCceeEEeeEE---------------EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 4544 35899999 99999999999999999999999999988652
Q ss_pred -----CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccC
Q 019592 76 -----RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 76 -----~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (338)
++.++.++ .++..++..++..+.......+.....+...+.++.+...... ....+|.++.+|+..+++.+.
T Consensus 67 ~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~ 146 (363)
T TIGR01186 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA 146 (363)
T ss_pred HHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 24444444 2334455555544332222211111233455666665554322 334789999999888888899
Q ss_pred CCcEEEEeccccccchHHH
Q 019592 148 PSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~ 166 (338)
+++++++|+|++.+|+..+
T Consensus 147 ~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 147 EPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999998643
No 90
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.48 E-value=2.8e-14 Score=123.40 Aligned_cols=137 Identities=17% Similarity=0.122 Sum_probs=88.1
Q ss_pred ccccc---ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 16 VHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 16 ~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
+.|++ ..++|+|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 8 ~~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 8 KTYKKGTKPAVDDLSL---------------NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred EEeCCCCceeecceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHH
Confidence 44543 35788888 99999999999999999999999999987652 2
Q ss_pred ----EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCC
Q 019592 77 ----VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 77 ----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
+.++.++. ++..++..++..+....+..+.......+.+.++.+..... .....+|.++.+++..+.+.+.++
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 23333332 22233444433222111111111112234455555544322 233468888888888888888999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++++|+|+.++|+....
T Consensus 153 ~llllDEP~~~LD~~~~~ 170 (220)
T cd03263 153 SVLLLDEPTSGLDPASRR 170 (220)
T ss_pred CEEEECCCCCCCCHHHHH
Confidence 999999999999876443
No 91
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.48 E-value=2.3e-14 Score=124.57 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=85.3
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------------ 76 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------------------ 76 (338)
.++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 25 ~l~~~s~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 89 (228)
T PRK10584 25 ILTGVEL---------------VVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKH 89 (228)
T ss_pred EEeccEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhhe
Confidence 5677888 99999999999999999999999999987642 1
Q ss_pred EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 77 VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 77 ~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
+.++.++. ++..++..++..+....+..+.......+.+.+..+...... ....+|.++.+++..+.+.+.+++++|
T Consensus 90 i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~lll 169 (228)
T PRK10584 90 VGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLF 169 (228)
T ss_pred EEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 23333332 222233333332211111111111223445556665544322 234688888888888888889999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|+.++|+....
T Consensus 170 lDEPt~~LD~~~~~ 183 (228)
T PRK10584 170 ADEPTGNLDRQTGD 183 (228)
T ss_pred EeCCCCCCCHHHHH
Confidence 99999999876544
No 92
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=3.1e-14 Score=122.23 Aligned_cols=137 Identities=14% Similarity=0.172 Sum_probs=91.5
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------CE
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-----------------RV 77 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-----------------~~ 77 (338)
+.|++ ..++++|| ++.+|.+++|+|+||||||||++.|++.+++. .+
T Consensus 8 ~~~~~~~~l~~v~~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 8 KRFGRVTALDDISF---------------SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred EEECCEEEEeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccE
Confidence 44543 34789999 99999999999999999999999999987641 24
Q ss_pred EEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEE
Q 019592 78 VLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 78 ~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
.++.++. ++..++..++..+....++.+.....+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++++
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lll 152 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4555553 334455555443322112111111223445566665443222 2346888888888777888899999999
Q ss_pred eccccccchHHHh
Q 019592 155 EGILVFHDSRVRE 167 (338)
Q Consensus 155 dg~~~~~d~~~~~ 167 (338)
|+|+.++|+....
T Consensus 153 DEP~~~LD~~~~~ 165 (210)
T cd03269 153 DEPFSGLDPVNVE 165 (210)
T ss_pred eCCCcCCCHHHHH
Confidence 9999999876543
No 93
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.48 E-value=3.9e-14 Score=120.57 Aligned_cols=76 Identities=29% Similarity=0.350 Sum_probs=68.9
Q ss_pred cccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 261 LYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 261 ~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
+++++ +|+++++++++||++|.+.+||++.+||+++|++|+++++|+++.+|+||+|. +.|..+. +++|+||||||
T Consensus 2 v~~~~-~p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~-~~~~~~~~~~i~~V~ILrg 78 (207)
T TIGR01091 2 VVVIE-HPLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGE-TEGGRILGKKIVLVPILRA 78 (207)
T ss_pred eEecC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCc-EEEeEecCCcEEEEEEeCC
Confidence 45566 59999999999999999999999999999999999999999999999999995 5566665 67999999997
No 94
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=6.9e-14 Score=113.82 Aligned_cols=123 Identities=15% Similarity=0.022 Sum_probs=97.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------CEEEEeCCCCCCCCCHHHHHHccccCCCCcc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-----------------RVVLVNQDSFYHNLTEQELARVHEYNFDHPD 106 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-----------------~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~ 106 (338)
++..+..+++.|||||||||+++.+++...|. +-.++..+.....++..++.+++-..-+.+.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k 106 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK 106 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999998762 2244444566777888888777666566666
Q ss_pred cccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 107 AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 107 ~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
....+...+.+......+.- .+-.+|.++.+|+..+++....++.+++|+|+..+|...+
T Consensus 107 ~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tR 168 (259)
T COG4525 107 AQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168 (259)
T ss_pred HHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHH
Confidence 66667777778777765533 4457899999999888888899999999999998876543
No 95
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.47 E-value=3.9e-14 Score=129.64 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=90.4
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------------C
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------------R 76 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------------~ 76 (338)
..|+|||| ++++|.++||.|+||||||||+++|++.+.+. +
T Consensus 19 ~~L~~vsl---------------~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~ 83 (343)
T TIGR02314 19 QALNNVSL---------------HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ 83 (343)
T ss_pred EEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 35799999 99999999999999999999999999988752 2
Q ss_pred EEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 77 VVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 77 ~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
+.++.++ .++...+..++..+.......+......+..+.++.+...... ....+|.++.+|+..+++.+.++++++
T Consensus 84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL 163 (343)
T TIGR02314 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 3444444 2223344444433322111111112223445666666554332 334789999999888888899999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|++.+|+....
T Consensus 164 lDEPts~LD~~t~~ 177 (343)
T TIGR02314 164 CDEATSALDPATTQ 177 (343)
T ss_pred EeCCcccCCHHHHH
Confidence 99999999986443
No 96
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.47 E-value=3.9e-14 Score=117.54 Aligned_cols=186 Identities=18% Similarity=0.268 Sum_probs=113.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC----
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG---- 123 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~---- 123 (338)
..+|+|.||+||||||+++.|++.|+ +.+++...+|+-++..-+.. ...+ -+.+.+.+.+..+...
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg---~~yldTGamYRa~a~~~l~~--~~~~-----~d~~~~~~l~~~~~i~f~~~ 73 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLG---FHYLDTGAMYRAVALAALKH--GVDL-----DDEDALVALAKELDISFVND 73 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhC---CCeecccHHHHHHHHHHHHc--CCCC-----ccHHHHHHHHHhCCceeccc
Confidence 48999999999999999999999987 88999988875433221110 1111 1111122222211110
Q ss_pred -------Ccc-----------------ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCH
Q 019592 124 -------QAV-----------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDA 179 (338)
Q Consensus 124 -------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~ 179 (338)
.++ ..|.....+.+ .++......+-+|+||--.+ ..+.+..+++|||++++
T Consensus 74 ~~v~l~gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~---~Qr~~a~~~~~~V~dGRDiG--TvV~PdA~lKiFLtAS~ 148 (222)
T COG0283 74 DRVFLNGEDVSEEIRTEEVGNAASKVAAIPEVREALVK---LQRAFAKNGPGIVADGRDIG--TVVFPDAELKIFLTASP 148 (222)
T ss_pred ceEEECCchhhhhhhhHHHHHHHHHHHccHHHHHHHHH---HHHHHHhcCCCEEEecCCCc--ceECCCCCeEEEEeCCH
Confidence 000 01111111111 11122234466999997765 34566778999999999
Q ss_pred HHHHHHHHhhCcccc-CCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 180 DVRLARRIRRDTVEK-GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 180 ~~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
++|.+|+.+...... ....+.+......+...+-.+-+.|.++-.|.++..+ +..++++++++|...+.
T Consensus 149 e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDT--s~msieeVv~~il~~~~ 218 (222)
T COG0283 149 EERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDT--SSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEEC--CCCcHHHHHHHHHHHHH
Confidence 999999987653322 2225777777777777777778899888888655432 23567777777776654
No 97
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.47 E-value=3.7e-14 Score=122.12 Aligned_cols=133 Identities=13% Similarity=0.058 Sum_probs=84.9
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------------- 76 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------------- 76 (338)
..++|+|| ++.++.+++|+|+||||||||++.|++.+++. |
T Consensus 16 ~il~~is~---------------~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 16 AALHDVSL---------------HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred eeecceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 34789999 99999999999999999999999999987642 2
Q ss_pred EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 77 VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 77 ~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
+.++.++. ++..++..++..+....+........+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 22333331 112233333322211111100111122344555555443322 224688888888888888889999999
Q ss_pred EeccccccchHHHhh
Q 019592 154 LEGILVFHDSRVREL 168 (338)
Q Consensus 154 ldg~~~~~d~~~~~~ 168 (338)
+|||+.++|+..+..
T Consensus 161 LDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 161 ADEPTGNLDPDLSER 175 (214)
T ss_pred EeCCcccCCHHHHHH
Confidence 999999998765443
No 98
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.47 E-value=5e-14 Score=122.86 Aligned_cols=138 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++++|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 7 SKRYGKRKVVNGVSL---------------SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71 (232)
T ss_pred EEEeCCEEeecccee---------------EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhH
Confidence 4555443 4799999 99999999999999999999999999987642 1
Q ss_pred -----EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCC
Q 019592 77 -----VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 77 -----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
+.++.++. ++..++..++..+....+..........+.+.+..+...... ....+|.++.+++..+.+.+.+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 23344432 233344444333221111111111122334555555443222 2346888888888888888899
Q ss_pred CcEEEEeccccccchHHHh
Q 019592 149 SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~ 167 (338)
++++++|+|+.++|+....
T Consensus 152 p~llllDEPt~~LD~~~~~ 170 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQ 170 (232)
T ss_pred CCEEEecCCcccCCHHHHH
Confidence 9999999999999876443
No 99
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=4.4e-14 Score=121.62 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=93.1
Q ss_pred HhhcCCcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------
Q 019592 10 IEASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------ 76 (338)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------ 76 (338)
..++..+.|+++.+ |+|| ++.+ .+++|.|+||||||||++.|++.+.+. |
T Consensus 2 ~~~~l~~~~~~~~~-~vsl---------------~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 64 (214)
T cd03297 2 LCVDIEKRLPDFTL-KIDF---------------DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDS 64 (214)
T ss_pred ceeeeeEecCCeee-CceE---------------EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccc
Confidence 34567889988888 9999 9999 999999999999999999999987642 1
Q ss_pred ------------EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCC
Q 019592 77 ------------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (338)
Q Consensus 77 ------------~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~ 141 (338)
+.++.++. ++..++..++..+....+ . ...+...+.+.++.+...... ....+|.++.+++..
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 142 (214)
T cd03297 65 RKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-R-NREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVAL 142 (214)
T ss_pred cchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-C-HHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHH
Confidence 22333332 222334433332211111 0 111223445566665544322 334688888888888
Q ss_pred CccccCCCcEEEEeccccccchHHHh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+.+.+++++++|+|+.++|+....
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~ 168 (214)
T cd03297 143 ARALAAQPELLLLDEPFSALDRALRL 168 (214)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 88888999999999999999876543
No 100
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.46 E-value=4.4e-14 Score=119.31 Aligned_cols=132 Identities=17% Similarity=0.105 Sum_probs=82.3
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE----------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV---------------------- 77 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~---------------------- 77 (338)
..++++|| ++.++.+++|+|+||||||||+++|++.+++. |-
T Consensus 6 ~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 70 (190)
T TIGR01166 6 EVLKGLNF---------------AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRV 70 (190)
T ss_pred ceecceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhE
Confidence 35799999 99999999999999999999999999987652 22
Q ss_pred EEEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 78 VLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 78 ~~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
.++.++. .+...+..++..+....+..........+.+.++.+...... ....+|.++.+++..+++.+.++++++
T Consensus 71 ~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 150 (190)
T TIGR01166 71 GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLL 150 (190)
T ss_pred EEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2223321 111122222222111111100000112234445544433222 234688888888887888889999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|+.++|+...+
T Consensus 151 lDEPt~~LD~~~~~ 164 (190)
T TIGR01166 151 LDEPTAGLDPAGRE 164 (190)
T ss_pred EcCCcccCCHHHHH
Confidence 99999999876443
No 101
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.46 E-value=5.7e-14 Score=120.13 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=91.5
Q ss_pred Cccccc--ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 15 ~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+.+.
T Consensus 6 ~~~~~~~~~~l~~v~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 6 SFSYKKGTEILDDLSL---------------DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERR 70 (205)
T ss_pred EEEeCCcCceeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhh
Confidence 355544 45799999 99999999999999999999999999987652
Q ss_pred -CEEEEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 76 -RVVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 76 -~~~~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
.+.++.++. ++...+..++..+...... .+...+.+.++.+...... ....+|.++.+++..+++.+.+++
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC
Confidence 234445542 1222344443332111111 1223455667666554322 234688899998888888889999
Q ss_pred EEEEeccccccchHHHhh
Q 019592 151 VILLEGILVFHDSRVREL 168 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~~ 168 (338)
++++|||+.++|+..+..
T Consensus 147 llllDEPt~~LD~~~~~~ 164 (205)
T cd03226 147 LLIFDEPTSGLDYKNMER 164 (205)
T ss_pred EEEEeCCCccCCHHHHHH
Confidence 999999999998875443
No 102
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.46 E-value=4.7e-14 Score=120.74 Aligned_cols=137 Identities=17% Similarity=0.116 Sum_probs=86.5
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEE--------------
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVL-------------- 79 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~-------------- 79 (338)
+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+.+. |-..
T Consensus 6 ~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 6 KKFGDKIILDDLNL---------------TIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred EEECCEEEEeceEE---------------EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhH
Confidence 45544 45799999 99999999999999999999999999988652 2222
Q ss_pred ----------EeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcccc
Q 019592 80 ----------VNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 80 ----------l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++. ++...+..++..+.....+.+.......+.+.++.+...... ....+|.++.+++..+.+.+
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 22221 112233333222211111111111123344555555443322 33468888888888788888
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++|+|+|+.++|+....
T Consensus 151 ~~p~llllDEPt~~LD~~~~~ 171 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRD 171 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHH
Confidence 999999999999999876443
No 103
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=5.5e-14 Score=123.10 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=91.9
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------ 75 (338)
.+.|++. .++++|| ++.+|.+++|.|+||||||||++.|++.+.+.
T Consensus 9 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 9 SKRFGDFVALDDVSL---------------DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEECCEEeeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccc
Confidence 3455443 4788888 99999999999999999999999999987641
Q ss_pred -CEEEEeCCC-CCCCCCHHHHHHccccCCCC----cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccC
Q 019592 76 -RVVLVNQDS-FYHNLTEQELARVHEYNFDH----PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 76 -~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (338)
++.++.++. ++..++..++..+....... ........+.+.+..+...... ....+|.++.+++..+.+.+.
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 244555553 33345555554432211110 0001122344556655543322 234688899999888888889
Q ss_pred CCcEEEEeccccccchHHHh
Q 019592 148 PSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~ 167 (338)
+++++++|+|+.++|+....
T Consensus 154 ~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred CCCEEEEcCCcccCCHHHHH
Confidence 99999999999999886544
No 104
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.6e-14 Score=134.75 Aligned_cols=176 Identities=14% Similarity=0.185 Sum_probs=121.5
Q ss_pred ccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 019592 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~ 76 (338)
+.+.++||+|+||.. ..|...+-..++++|.+++++|||||||||++..|.+.+.|. .
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 567799999999977 558888888999999999999999999999999999999872 3
Q ss_pred EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHH---------HHHHHhccCCcc----ccccccCcCCccCCCCc
Q 019592 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL---------SSMEKLRHGQAV----DIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 77 ~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~---------~~l~~l~~~~~~----~~~~~~~~~~~~~~~~~ 143 (338)
+.++.|+.....-+..++..++. + ....+.+. +.+..+..|-+. .--.++.+++||...++
T Consensus 544 Ig~V~QEPvLFs~sI~eNI~YG~-----~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 544 IGLVGQEPVLFSGSIRENIAYGL-----D-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred eeeeeccceeecccHHHHHhcCC-----C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 45555555444444455444332 2 12222222 233334443221 11268999999998899
Q ss_pred cccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCcc
Q 019592 144 RRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~ 223 (338)
+.+.+|.++|+||.++.+| +..|-..+..+.|. -.++++.-+.|.... .+.
T Consensus 618 ALlr~P~VLILDEATSALD--------------aeSE~lVq~aL~~~--~~~rTVlvIAHRLST-------------V~~ 668 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALD--------------AESEYLVQEALDRL--MQGRTVLVIAHRLST-------------VRH 668 (716)
T ss_pred HHhcCCCEEEEechhhhcc--------------hhhHHHHHHHHHHh--hcCCeEEEEehhhhH-------------hhh
Confidence 9999999999999999875 44555555555443 223666666666655 477
Q ss_pred ccEEec
Q 019592 224 ADIIIP 229 (338)
Q Consensus 224 aD~iI~ 229 (338)
||.|+.
T Consensus 669 Ad~Ivv 674 (716)
T KOG0058|consen 669 ADQIVV 674 (716)
T ss_pred ccEEEE
Confidence 785553
No 105
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.2e-13 Score=119.16 Aligned_cols=124 Identities=17% Similarity=0.114 Sum_probs=83.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC-EEEEeCCCCCCCCCHHHHHHccccCCCCcc----------------
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR-VVLVNQDSFYHNLTEQELARVHEYNFDHPD---------------- 106 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~-~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~---------------- 106 (338)
.++++..++|.|+|||||||+++.|++++.|.. ...++.-+........+......+.|++|+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~ 105 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL 105 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhch
Confidence 999999999999999999999999999998742 333333221111122223333334444443
Q ss_pred -------cccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 107 -------AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 107 -------~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.--..+..+.+......... ....+|.+..+|+..+...+.+++++|+|+|++++|+..+.
T Consensus 106 ~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 106 ENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 21223445556555554333 33478999999988888888999999999999999987544
No 106
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=5.1e-14 Score=125.40 Aligned_cols=140 Identities=14% Similarity=0.040 Sum_probs=91.8
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------- 76 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------------- 76 (338)
+..+.|++.. ++|+|| ++.+|.+++|+|+||||||||+++|++.+++. |
T Consensus 29 ~~~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~ 93 (269)
T cd03294 29 EILKKTGQTVGVNDVSL---------------DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSR 93 (269)
T ss_pred hhhhhcCCceEeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccCh
Confidence 3456676665 799999 99999999999999999999999999988652 2
Q ss_pred ----------EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCc
Q 019592 77 ----------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 77 ----------~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~ 143 (338)
+.++.++. ++..++..++..+...............+.+.++.+...... ....+|.++.+++..+.
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173 (269)
T ss_pred hhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 23333332 222334444333211111101111123344556555443322 33468889999988888
Q ss_pred cccCCCcEEEEeccccccchHHHh
Q 019592 144 RRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+.+++++|+|||+.++|+....
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~ 197 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRR 197 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHH
Confidence 888999999999999999876543
No 107
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=4.8e-14 Score=129.66 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=87.8
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------------- 76 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------------- 76 (338)
..|+|+|| ++++|.+++|+|+||||||||+++|++.+.+. |
T Consensus 19 ~il~~vsl---------------~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 83 (343)
T PRK11153 19 HALNNVSL---------------HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ 83 (343)
T ss_pred EEEEeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 35788888 99999999999999999999999999988652 2
Q ss_pred EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 77 VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 77 ~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
+.++.++. ++..++..++..+....+..+.......+.+.++.+...... ....+|.++.+++..+++.+.++++++
T Consensus 84 ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl 163 (343)
T PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33333332 222344444433221111111111123344556665544322 334688999999888888889999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|++++|+..+.
T Consensus 164 LDEPts~LD~~~~~ 177 (343)
T PRK11153 164 CDEATSALDPATTR 177 (343)
T ss_pred EeCCcccCCHHHHH
Confidence 99999999986544
No 108
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=5.8e-14 Score=122.52 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=84.5
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------------- 76 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------------- 76 (338)
..++++|| ++.++.+++|+|+||||||||++.|++.+++. |
T Consensus 19 ~il~~~s~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (233)
T cd03258 19 TALKDVSL---------------SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRR 83 (233)
T ss_pred eeeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 35788888 99999999999999999999999999988752 2
Q ss_pred EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 77 VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 77 ~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
+.++.++. ++..++..++..+....+..........+.+.++.+...... ....+|.++.+++..+.+.+.+++++|
T Consensus 84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 163 (233)
T cd03258 84 IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL 163 (233)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22333332 122233333322211111101111122344555555443322 334688888888888888889999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|+.++|+....
T Consensus 164 LDEP~~~LD~~~~~ 177 (233)
T cd03258 164 CDEATSALDPETTQ 177 (233)
T ss_pred ecCCCCcCCHHHHH
Confidence 99999999876543
No 109
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.46 E-value=5.2e-14 Score=138.96 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=105.1
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEE
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVV 78 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~ 78 (338)
.+.++||+|+|++...+.+.....++++|..++|+|+||||||||++.|++.+.|. .+.
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 58899999999877678888888899999999999999999999999999998862 346
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHH---------HhccCCcccc----ccccCcCCccCCCCccc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDI----PNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---------~l~~~~~~~~----~~~~~~~~~~~~~~~~~ 145 (338)
+++||.+.-+-+..++..++. ++.++.+.+.+.++ .+..|-+... ..+|.|+.+|...+++.
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal 495 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_pred EEccCceeecchHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 777777665555656554432 22234444444433 3333322211 35788888888888888
Q ss_pred cCCCcEEEEeccccccchHHH
Q 019592 146 VNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~ 166 (338)
+.+++++|+|||++.+|+...
T Consensus 496 l~~~~ililDEptsaLD~~t~ 516 (582)
T PRK11176 496 LRDSPILILDEATSALDTESE 516 (582)
T ss_pred HhCCCEEEEECccccCCHHHH
Confidence 999999999999999987643
No 110
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.46 E-value=6.1e-14 Score=129.11 Aligned_cols=139 Identities=15% Similarity=0.151 Sum_probs=99.1
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------------ 74 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------------------ 74 (338)
..+.|++. .|+++|| ++..|.+++|.|+||||||||+++|++.+++
T Consensus 8 l~~~~~~~~~l~~isl---------------~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 8 IKKSFGRTQVLNDISL---------------DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72 (353)
T ss_pred EEEEeCCeEEEEEeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 34666554 4799999 9999999999999999999999999998765
Q ss_pred -CCEEEEeCC-CCCCCCCHHHHHHccccCC---CC-cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcccc
Q 019592 75 -QRVVLVNQD-SFYHNLTEQELARVHEYNF---DH-PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 75 -~~~~~l~~D-~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 146 (338)
.++.++.++ .++..++..++..+....+ .. +.......+.+.++.+...... ....+|.++.+|+..+++.+
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 135566666 3445567766655432211 01 1111234555667766554322 33478999999988888889
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|+|+..+|+..+.
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHH
Confidence 999999999999999986554
No 111
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=5.7e-14 Score=124.07 Aligned_cols=138 Identities=15% Similarity=0.050 Sum_probs=92.2
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------E
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------V 77 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------~ 77 (338)
.+.|++. .++|+|| ++++|.+++|+|+||||||||++.|++.+++. | +
T Consensus 8 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 8 YADYGGKPALEDINL---------------TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER 72 (255)
T ss_pred EEEeCCeeeEeeeeE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcE
Confidence 3555443 4799999 99999999999999999999999999987652 2 2
Q ss_pred EEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEE
Q 019592 78 VLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 78 ~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
.++.++. ++..++..++..+.......+.......+.+.+..+...... ....+|.++.+++..+.+.+.+++++|+
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllL 152 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3444442 333445555443321111111111223455666666543322 2346888888888888888899999999
Q ss_pred eccccccchHHHh
Q 019592 155 EGILVFHDSRVRE 167 (338)
Q Consensus 155 dg~~~~~d~~~~~ 167 (338)
|+|+.++|+....
T Consensus 153 DEPt~~LD~~~~~ 165 (255)
T PRK11248 153 DEPFGALDAFTRE 165 (255)
T ss_pred eCCCccCCHHHHH
Confidence 9999999876543
No 112
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=5.8e-14 Score=130.20 Aligned_cols=138 Identities=12% Similarity=0.146 Sum_probs=97.9
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------------- 74 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------------------- 74 (338)
.+.|+++ .|++++| ++..+.+++|.|+||||||||+++|++...+
T Consensus 26 ~~~~~~~~~l~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 26 TKSFDGQHAVDDVSL---------------TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred EEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 4555443 3677777 9999999999999999999999999998765
Q ss_pred CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcE
Q 019592 75 QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 75 ~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
.++.++.++ .++..++..++..++......+.......+.+.++.+...... ....+|.++.+|+..+++.+.++++
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 135566666 4556677777765443211112112223455666666554322 3347899999998888888999999
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+++|+|++.+|+..+.
T Consensus 171 LLLDEP~s~LD~~~r~ 186 (377)
T PRK11607 171 LLLDEPMGALDKKLRD 186 (377)
T ss_pred EEEeCCcccCCHHHHH
Confidence 9999999999986554
No 113
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.45 E-value=5.7e-14 Score=120.86 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=89.2
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------- 75 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------- 75 (338)
++|++. .++|+|| ++.+|.+++|.|+||||||||++.|++.+++.
T Consensus 8 ~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 8 KRFGNVTALDDLNL---------------DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred EEECCeeeeeceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccc
Confidence 455443 4799999 99999999999999999999999999987641
Q ss_pred CEEEEeCCCC-CCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 76 RVVLVNQDSF-YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 76 ~~~~l~~D~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
.+.++.++.. +...+..++..+...............+.+.+..+...... ....+|.++.+++..+.+.+.+++++
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 152 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1344454432 23344444433321111111111122334455555443222 33468888888888888888999999
Q ss_pred EEeccccccchHHHh
Q 019592 153 LLEGILVFHDSRVRE 167 (338)
Q Consensus 153 Ildg~~~~~d~~~~~ 167 (338)
++|+|+.++|+....
T Consensus 153 llDEPt~~LD~~~~~ 167 (213)
T cd03301 153 LMDEPLSNLDAKLRV 167 (213)
T ss_pred EEcCCcccCCHHHHH
Confidence 999999999886543
No 114
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=99.45 E-value=4.4e-14 Score=120.25 Aligned_cols=73 Identities=37% Similarity=0.631 Sum_probs=65.9
Q ss_pred ccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCC-CCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 266 STFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 266 ~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~-l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
+||+++++++++||++|+..+||++.+|++++|++|++++ +|+++.+|+||+|..+.|.... .++|+||||||
T Consensus 3 ~~p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRa 77 (207)
T PF14681_consen 3 QHPLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRA 77 (207)
T ss_dssp B-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCC
Confidence 4699999999999999999999999999999999999998 9999999999999888887665 48999999998
No 115
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.45 E-value=4.3e-14 Score=121.70 Aligned_cols=138 Identities=12% Similarity=0.060 Sum_probs=86.4
Q ss_pred Cccccc--ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 15 ~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 7 ~~~~~~~~~~l~~~sl---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 7 TKTYPNGTAALDGINI---------------SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred EEEeCCCceeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHH
Confidence 345532 45799999 99999999999999999999999999987652 2
Q ss_pred --------EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 77 --------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 77 --------~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
+.++.++. ++..++..++..+....+..........+.+.++.+...... ....+|.++.+++..+++.
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 22333321 222233333322211111100001112334455554433222 2346888888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++++|+|++++|+....
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHH
Confidence 8999999999999999876543
No 116
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.45 E-value=6.6e-14 Score=119.40 Aligned_cols=77 Identities=30% Similarity=0.399 Sum_probs=71.8
Q ss_pred CcccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 260 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 260 ~~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
++++++ +|+++++++++||++|.+.+||++.+||+++|++|+++++|+++.+|+||+| .+.|..+. +++|+||||||
T Consensus 3 ~v~~~~-~p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g-~~~g~~~~~~~~vvV~Ilrg 80 (209)
T PRK00129 3 KVHVVD-HPLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLG-KTTGKRIAGKKLVIVPILRA 80 (209)
T ss_pred ceEecC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCC-cEEEEEecCCeEEEEEEeCC
Confidence 456666 5999999999999999999999999999999999999999999999999999 88999887 67999999997
No 117
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=5.3e-14 Score=125.46 Aligned_cols=124 Identities=12% Similarity=0.107 Sum_probs=80.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEeCCC--CCCCCCHHHHHHcccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVNQDS--FYHNLTEQELARVHEY 100 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l~~D~--~~~~l~~~~~~~~~~~ 100 (338)
++.+|.+++|.|+||||||||++.|++.+++. | +.++.++. ++...+..++..+...
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 110 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE 110 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHH
Confidence 99999999999999999999999999987652 2 23444442 2333344443332211
Q ss_pred CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
............+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+.++|+....
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~ 179 (271)
T PRK13632 111 NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179 (271)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11000111112344455555443222 33478888888888888888999999999999999876543
No 118
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=99.45 E-value=3e-14 Score=114.71 Aligned_cols=78 Identities=46% Similarity=0.792 Sum_probs=71.9
Q ss_pred cccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeCCCeeEEEeecC
Q 019592 261 LYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFCKRLCGVSVIRR 338 (338)
Q Consensus 261 ~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~~~~~~v~ilra 338 (338)
.+++.-+.++..+++++||+.|.+.+|.++.+|+.++.++|.+++||+++..|+||+|..|+|.++.+.-|+|+|+|+
T Consensus 68 lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPytec~VtTPTG~kYEGikf~~GNCGVSi~RS 145 (267)
T KOG1017|consen 68 LKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTECTVTTPTGFKYEGIKFNRGNCGVSICRS 145 (267)
T ss_pred cchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccceeeecCCcceeeceeecCCCcceEEEec
Confidence 344445567788889999999999999999999999999999999999999999999999999999999999999996
No 119
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.45 E-value=7.4e-14 Score=120.16 Aligned_cols=138 Identities=16% Similarity=0.245 Sum_probs=92.1
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------CE
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------RV 77 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------~~ 77 (338)
.+.|++. .++++|| ++.++.+++|+|+||||||||++.|++.+.+. ++
T Consensus 6 ~~~~~~~~~l~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i 70 (213)
T cd03235 6 TVSYGGHPVLEDVSF---------------EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70 (213)
T ss_pred eeEECCEEeeeccee---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhhe
Confidence 3455443 4799999 99999999999999999999999999987651 24
Q ss_pred EEEeCCCCC---CCCCHHHHHHccccCC----CCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCC
Q 019592 78 VLVNQDSFY---HNLTEQELARVHEYNF----DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 78 ~~l~~D~~~---~~l~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
.++.++... ...+..++..+..... ........+.+.+.++.+...... ....+|.++.+++..+.+.+.+
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQD 150 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 556665332 1245555443322110 011111223455566655443222 3346888888888888888899
Q ss_pred CcEEEEeccccccchHHHh
Q 019592 149 SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~ 167 (338)
++++++|+|+.++|+..+.
T Consensus 151 p~llllDEPt~~LD~~~~~ 169 (213)
T cd03235 151 PDLLLLDEPFAGVDPKTQE 169 (213)
T ss_pred CCEEEEeCCcccCCHHHHH
Confidence 9999999999999876544
No 120
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=7.4e-14 Score=122.00 Aligned_cols=138 Identities=16% Similarity=0.147 Sum_probs=88.7
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++|+|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 7 TKSFGGRTVLKGVDL---------------DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71 (235)
T ss_pred EEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhh
Confidence 3455443 5799999 99999999999999999999999999988652 2
Q ss_pred -------EEEEeCCC-CCCCCCHHHHHHccccCCC-CcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 77 -------VVLVNQDS-FYHNLTEQELARVHEYNFD-HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 77 -------~~~l~~D~-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
+.++.++. ++..++..++..+....+. .+.......+.+.++.+...... ....+|.++.+++..+.+.
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 22333331 2222344443322211110 01111122344556655543322 3346888999998888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++++|+|+.++|+....
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHH
Confidence 8999999999999999876543
No 121
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.45 E-value=7.8e-14 Score=121.93 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=88.3
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|++ ..++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 9 ~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 9 FAYGARRALDDVSF---------------TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhh
Confidence 44543 34788888 99999999999999999999999999987652 2
Q ss_pred --EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcE
Q 019592 77 --VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 77 --~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
+.++.++. ++..++..++..+.....+.+.......+.+.++.+..... .....+|.++.+++..+.+.+.++++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23334332 22333443333221111111111112234455555544322 23346888888888888888899999
Q ss_pred EEEeccccccchHHHhh
Q 019592 152 ILLEGILVFHDSRVREL 168 (338)
Q Consensus 152 lIldg~~~~~d~~~~~~ 168 (338)
+++|+|+.++|+.....
T Consensus 154 lllDEP~~~LD~~~~~~ 170 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAA 170 (236)
T ss_pred EEEcCCccCCCHHHHHH
Confidence 99999999998765443
No 122
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=6.6e-14 Score=125.28 Aligned_cols=125 Identities=16% Similarity=0.131 Sum_probs=80.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEeCCC--CCCCCCHHHHHHcccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVNQDS--FYHNLTEQELARVHEY 100 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l~~D~--~~~~l~~~~~~~~~~~ 100 (338)
++.+|.+++|+|+||||||||++.|++.+++. | +.++.++. ++...+..++..+...
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~ 108 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE 108 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence 99999999999999999999999999988752 2 33444442 2333344333322211
Q ss_pred CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
.+..+..-....+.+.+..+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+.....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 109 NIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11111111122344455554443322 334788888888888888889999999999999998875443
No 123
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.44 E-value=5.9e-14 Score=121.22 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=86.0
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------------------EEEEe
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------------VVLVN 81 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------------------~~~l~ 81 (338)
.++++|| +++++.+++|.|+||||||||++.|++.+++. | +.++.
T Consensus 20 il~~~sl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 84 (218)
T cd03266 20 AVDGVSF---------------TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVS 84 (218)
T ss_pred eecceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEec
Confidence 5678888 99999999999999999999999999987652 1 33444
Q ss_pred CCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccc
Q 019592 82 QDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (338)
Q Consensus 82 ~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~ 158 (338)
++. ++..++..++..+....+..+.......+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+
T Consensus 85 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 164 (218)
T cd03266 85 DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT 164 (218)
T ss_pred CCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 442 223344444433211111111111123344556655443322 33468888888888888888999999999999
Q ss_pred cccchHHHh
Q 019592 159 VFHDSRVRE 167 (338)
Q Consensus 159 ~~~d~~~~~ 167 (338)
.++|+....
T Consensus 165 ~~LD~~~~~ 173 (218)
T cd03266 165 TGLDVMATR 173 (218)
T ss_pred cCCCHHHHH
Confidence 999876544
No 124
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.44 E-value=8.3e-14 Score=120.53 Aligned_cols=131 Identities=12% Similarity=0.092 Sum_probs=85.5
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------------ 76 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------------------ 76 (338)
.++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 20 ~l~~isl---------------~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (221)
T TIGR02211 20 VLKGVSL---------------SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKK 84 (221)
T ss_pred eEeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhc
Confidence 5788888 99999999999999999999999999987641 1
Q ss_pred EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 77 VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 77 ~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
+.++.++. ++..++..++..+...............+.+.+..+...... ....+|.++.+++..+.+.+.++++++
T Consensus 85 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 164 (221)
T TIGR02211 85 LGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVL 164 (221)
T ss_pred EEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 33444442 222344444332211101001111122344555555443322 234688888888888888889999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|++++|+....
T Consensus 165 lDEPt~~LD~~~~~ 178 (221)
T TIGR02211 165 ADEPTGNLDNNNAK 178 (221)
T ss_pred EeCCCCcCCHHHHH
Confidence 99999999876443
No 125
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2.9e-14 Score=116.17 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=100.6
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-----
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF----- 85 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~----- 85 (338)
+..|+|++.. ++++|+ .+++|.+.+|.||||||||||+.+++++++.. |-..+++-+.
T Consensus 6 nv~K~y~~~~vl~~isl---------------~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 6 NVSKSYGTKVVLDDVSL---------------DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPS 70 (252)
T ss_pred hhhHhhCCEEeecccee---------------eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCCh
Confidence 3458886655 699999 99999999999999999999999999988752 3333333211
Q ss_pred ----------------CCCCCHHHHHHccccCCC--CcccccHHHHHHHHHHhccCC--ccccccccCcCCccCCCCccc
Q 019592 86 ----------------YHNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 86 ----------------~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 145 (338)
--.++..++-.++.|.|. .+...|.....+.++-+.... +.+...+|++..+|.-.+...
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 123444555667776663 455677778888888776653 346678999999987666667
Q ss_pred cCCCcEEEEeccccccch
Q 019592 146 VNPSDVILLEGILVFHDS 163 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~ 163 (338)
....+++++|+|+..+|-
T Consensus 151 aQdTdyvlLDEPLNNLDm 168 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDM 168 (252)
T ss_pred eccCcEEEecCcccccch
Confidence 789999999999998763
No 126
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.44 E-value=7.8e-14 Score=120.79 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=86.0
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|++. .++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 8 ~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 8 AGYGKSQILFGVSL---------------TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72 (222)
T ss_pred eecCCeeEeeeeeE---------------EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHH
Confidence 455443 4788888 99999999999999999999999999987642 1
Q ss_pred ----EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhc-cCC--ccccccccCcCCccCCCCccccCC
Q 019592 77 ----VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 77 ----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
+.++.++. ++..++..++..+...... .......+.+.++.+. ... ......+|.++.+++..+.+.+.+
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 33344432 2233344443322211111 0011122333444431 221 223346888888888888888899
Q ss_pred CcEEEEeccccccchHHHh
Q 019592 149 SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~ 167 (338)
++++++|+|+.++|+..+.
T Consensus 151 p~llllDEPt~~LD~~~~~ 169 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVE 169 (222)
T ss_pred CCEEEECCCcccCCHHHHH
Confidence 9999999999999876544
No 127
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.44 E-value=1e-13 Score=111.58 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=88.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCC-------------------CCCCCCCHHHHHHccccCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQD-------------------SFYHNLTEQELARVHEYNFD 103 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D-------------------~~~~~l~~~~~~~~~~~~~~ 103 (338)
.++.+.+++|.||||||||||.+.+++...|. |...++.. +.+..++..++..++-..--
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 57889999999999999999999999988762 23333332 23333444444333221111
Q ss_pred CcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhc
Q 019592 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 104 ~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~ 169 (338)
.-.+.+.+++...+......... ....+|.+..+|+..++..+...+++++|+||+.+||.++..+
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM 168 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH
Confidence 12345666777777776665433 3348999999999888888999999999999999999887654
No 128
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.44 E-value=1.2e-13 Score=120.75 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=89.2
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|++. .++++|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 8 ~~~~~~~~l~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 8 KRFGGLVALDDVSF---------------SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred EEECCEEEecCceE---------------EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHH
Confidence 445443 5788888 99999999999999999999999999987641 2
Q ss_pred ----EEEEeCC-CCCCCCCHHHHHHccccCCCCc----------ccccHHHHHHHHHHhccCCcc--ccccccCcCCccC
Q 019592 77 ----VVLVNQD-SFYHNLTEQELARVHEYNFDHP----------DAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNN 139 (338)
Q Consensus 77 ----~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~ 139 (338)
+.++.++ .++..++..++..+........ ..-....+.+.++.+...... ....+|.++.+++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHH
Confidence 3334443 2233344444433221111000 001122344556665543322 3346888888888
Q ss_pred CCCccccCCCcEEEEeccccccchHHHh
Q 019592 140 VFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 140 ~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..+.+.+.+++++++|+|+.++|+..+.
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~ 180 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETE 180 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 8888888999999999999999876544
No 129
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=9.2e-14 Score=121.95 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=89.7
Q ss_pred ccccc--ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 16 VHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 16 ~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
+.|++ ..++++|| ++.+|.+++|.|+||||||||+++|++.+++. |
T Consensus 8 ~~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 8 KRYGGGKKAVNNLNL---------------EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred EEeCCcceEeeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHH
Confidence 44544 35788888 99999999999999999999999999987652 2
Q ss_pred ----EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC--c--cccccccCcCCccCCCCccccC
Q 019592 77 ----VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--A--VDIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 77 ----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 147 (338)
+.++.++. ++..++..++..+...............+.+.++.+.... . .....+|.++.+++..+.+.+.
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 23344432 2223444444332211111111111234456666665543 1 2334688888888888888889
Q ss_pred CCcEEEEeccccccchHHHh
Q 019592 148 PSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~ 167 (338)
+++++++|+|+.++|+....
T Consensus 153 ~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred CCCEEEecCCcccCCHHHHH
Confidence 99999999999999876443
No 130
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.43 E-value=8.8e-14 Score=139.77 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=104.9
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~ 77 (338)
+.+.++||+|+|+++..+.+.....++++|..++|+|+||||||||++.|.+.+.| ..+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 45789999999987667888889999999999999999999999999999999876 246
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHH---------hccCCcccc----ccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------l~~~~~~~~----~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-+-+..++..++. | .+.+.+.+.++. +..|-+... ..+|.|+.+|+..+++
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~-----~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGA-----P--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602 (686)
T ss_pred EEEccCCccCcccHHHHHhcCC-----C--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 7777777665556666655432 2 233333343333 222221111 2578888888888888
Q ss_pred ccCCCcEEEEeccccccchHHH
Q 019592 145 RVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.+++++|+|||++.+|+...
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te 624 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQ 624 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHH
Confidence 8999999999999999987643
No 131
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=8.1e-14 Score=119.71 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=85.1
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|++. .++|+|| ++.++ +++|.|+||||||||++.|++.+.+. |
T Consensus 8 ~~~~~~~~l~~vs~---------------~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 8 KRYGKKRALDGVSL---------------TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred EEECCEEEEcceeE---------------EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHH
Confidence 445443 4789999 88899 99999999999999999999987652 2
Q ss_pred --EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcE
Q 019592 77 --VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 77 --~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
+.++.++. ++..++..++..+.......+.......+.+.+..+..... .....+|.++.+++..+.+.+.++++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23333332 22223333332221111111111112233444555443321 23346888888888888888899999
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+++|+|+.++|+....
T Consensus 152 lllDEPt~~LD~~~~~ 167 (211)
T cd03264 152 LIVDEPTAGLDPEERI 167 (211)
T ss_pred EEEcCCcccCCHHHHH
Confidence 9999999999876443
No 132
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=1.6e-13 Score=117.90 Aligned_cols=124 Identities=16% Similarity=0.110 Sum_probs=83.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------CEEEEeCCCC-CCCCCHHHHHHccccCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------RVVLVNQDSF-YHNLTEQELARVHEYNFD 103 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------~~~~l~~D~~-~~~l~~~~~~~~~~~~~~ 103 (338)
++.++.+++|.|+||||||||++.|++.+++. .+.++.++.. +..++..++..+......
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 99 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL 99 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc
Confidence 89999999999999999999999999988651 2345555532 333455554433211000
Q ss_pred CcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 104 ~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.........+.+.+..+...... ....+|.++.+++..+.+.+.+++++|+|+|++++|+....
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 00111233455566665543322 23468888888888888888999999999999999876544
No 133
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=1.2e-13 Score=123.08 Aligned_cols=125 Identities=12% Similarity=0.063 Sum_probs=77.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEeCCC--CCCCCCHHHHHHcccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVNQDS--FYHNLTEQELARVHEY 100 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l~~D~--~~~~l~~~~~~~~~~~ 100 (338)
++.++.+++|.|+||||||||++.|++.+.+. | +.++.++. ++...+..++..+...
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~ 110 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLE 110 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHH
Confidence 99999999999999999999999999988752 2 22333332 1111222221111100
Q ss_pred CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
....+.......+.+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+.....
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 180 (269)
T PRK13648 111 NHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 00001111112334455555443222 334688888888888888889999999999999998875543
No 134
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.42 E-value=6.5e-14 Score=136.71 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=103.3
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------CEE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RVV 78 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------------~~~ 78 (338)
+.+.++||+|+|+++. +.+.....++++|..++|+|+|||||||+++.|.+.++|. .+.
T Consensus 333 ~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 4578999999997543 5788888899999999999999999999999999998762 356
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHH---------hccCCccc----cccccCcCCccCCCCccc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVD----IPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------l~~~~~~~----~~~~~~~~~~~~~~~~~~ 145 (338)
+++||.+.-+-+..++..++. |+ .+.+.+.+.++. +..|-+.. -..+|.|+.+|+..+++.
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~-----~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGR-----PD-ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred EEccCcccccccHHHHHhccC-----CC-CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 777887776666777665532 22 222333333332 22222211 124788888998888888
Q ss_pred cCCCcEEEEeccccccchHH
Q 019592 146 VNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~ 165 (338)
+.+++++|+|||++.+|+..
T Consensus 486 l~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred hcCCCEEEEeCCcccCCHHH
Confidence 99999999999999988754
No 135
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=1.8e-13 Score=119.19 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=106.2
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH----
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL---- 94 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~---- 94 (338)
-..++|+|| +++.|.|..|.|-||||||||.+++.++..|. |-..++..+.. .++..++
T Consensus 41 vvGv~~~sl---------------~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~-~~~~~~Lr~~R 104 (386)
T COG4175 41 VVGVNDASL---------------DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA-KLSAAELRELR 104 (386)
T ss_pred EEeecccee---------------eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchh-cCCHHHHHHHH
Confidence 344799999 99999999999999999999999999988863 33455554432 2222222
Q ss_pred ----------------------HHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 95 ----------------------ARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 95 ----------------------~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
..++...-+.|.....++..+.|+........ +...+|.+|.+|+..+++...+++
T Consensus 105 r~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~ 184 (386)
T COG4175 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD 184 (386)
T ss_pred hhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCC
Confidence 22222122224444455666777766554432 334899999999988889999999
Q ss_pred EEEEeccccccchHHHhhc------------CeEEEEecCHHHHHH
Q 019592 151 VILLEGILVFHDSRVRELM------------NMKIFVDTDADVRLA 184 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~~~------------d~~i~l~~~~~~~~~ 184 (338)
++++|++|+.+||-++..+ ..+||+.=+.++.++
T Consensus 185 IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlr 230 (386)
T COG4175 185 ILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALR 230 (386)
T ss_pred EEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHh
Confidence 9999999999999766543 257899888887653
No 136
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.42 E-value=1.1e-13 Score=115.09 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=79.7
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHcccc
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEY 100 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~~ 100 (338)
.+++++| .++++.+++|.|+||||||||++.|++.+++. |-..++..+.. ............+
T Consensus 17 ~l~~~~~---------------~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~i~~ 80 (173)
T cd03246 17 VLRNVSF---------------SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS-QWDPNELGDHVGY 80 (173)
T ss_pred ceeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc-cCCHHHHHhheEE
Confidence 5677777 99999999999999999999999999988753 33344332221 1222222222344
Q ss_pred CCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
.++.+.-+.. .+.+.+ +|.++.+++..+.+.+.+++++|+|+|+.++|+..+..
T Consensus 81 ~~q~~~~~~~-tv~~~l-------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~ 134 (173)
T cd03246 81 LPQDDELFSG-SIAENI-------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134 (173)
T ss_pred ECCCCccccC-cHHHHC-------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHH
Confidence 4555432221 111111 78888888888888889999999999999998765443
No 137
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.6e-14 Score=130.68 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=119.3
Q ss_pred hhcCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------
Q 019592 11 EASSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------------- 74 (338)
Q Consensus 11 ~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--------------- 74 (338)
.-+..|+|+++. |++++| .+.+|.++++.|.||||||||+|.|++.+.|
T Consensus 11 ~~~i~K~FggV~AL~~v~l---------------~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~ 75 (500)
T COG1129 11 LRGISKSFGGVKALDGVSL---------------TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS 75 (500)
T ss_pred eecceEEcCCceeecccee---------------EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCC
Confidence 445689998876 899999 9999999999999999999999999999886
Q ss_pred -------CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHH----HHHHHhccCCccccc--cccCcCCccCC
Q 019592 75 -------QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLL----SSMEKLRHGQAVDIP--NYDFKSYKNNV 140 (338)
Q Consensus 75 -------~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~l~~~~~~~~~--~~~~~~~~~~~ 140 (338)
.|+.+++|+ ....+++..++..++........-+|...+. +.|..+........+ .++.+..|.+.
T Consensus 76 sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~Ve 155 (500)
T COG1129 76 SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE 155 (500)
T ss_pred CHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHH
Confidence 478888888 5668888888877665533222335555544 445545443222223 44444555555
Q ss_pred CCccccCCCcEEEEeccccccchH-HHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccC
Q 019592 141 FPARRVNPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP 219 (338)
Q Consensus 141 ~~~~~~~~~~vlIldg~~~~~d~~-~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~ 219 (338)
.+++...+++++|+|||++.+... ....+ +.+ |+.+.+|.....+.|...+.
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf---------------~~i-r~Lk~~Gv~ii~ISHrl~Ei----------- 208 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLF---------------DLI-RRLKAQGVAIIYISHRLDEV----------- 208 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH---------------HHH-HHHHhCCCEEEEEcCcHHHH-----------
Confidence 666677899999999999987543 22233 222 22344566666666655443
Q ss_pred cCccccEEe
Q 019592 220 TKKYADIII 228 (338)
Q Consensus 220 ~~~~aD~iI 228 (338)
.+.||.|.
T Consensus 209 -~~i~Drit 216 (500)
T COG1129 209 -FEIADRIT 216 (500)
T ss_pred -HHhcCEEE
Confidence 37788544
No 138
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.42 E-value=7.6e-14 Score=140.81 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=105.7
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++||+|+|++...+.+.....++++|..++|+|+||||||||++.|++.+.|. .+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 457899999999977677888888899999999999999999999999999998762 35
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHH---------hccCCccc----cccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVD----IPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------l~~~~~~~----~~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-+-+..++..++. |+ .+.+.+.+.++. +..|-+.. -..+|.|+.+|+..+++
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~-----~~-~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWD-----PT-IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred eEEecCChhhhccHHHHhhCCC-----CC-CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 6777887765666666655432 22 233334333332 22222211 13578888888888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++|+|||++.+|+...+
T Consensus 630 ll~~p~iliLDEptS~LD~~te~ 652 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEK 652 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHH
Confidence 89999999999999999876443
No 139
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=1.7e-13 Score=127.66 Aligned_cols=136 Identities=11% Similarity=0.053 Sum_probs=91.9
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|+.. .|+++|| +++++.+++|.|+||||||||+++|++.+.+. |
T Consensus 36 ~~~~~~~~L~~isl---------------~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l 100 (400)
T PRK10070 36 EKTGLSLGVKDASL---------------AIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL 100 (400)
T ss_pred hhcCCeEEEEeEEE---------------EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHH
Confidence 344333 5899999 99999999999999999999999999988652 2
Q ss_pred -------EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcccc
Q 019592 77 -------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 77 -------~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++.++. ++..++..++..+.......+.....+.+.+.++.+...... ....+|.++.+++..+++.+
T Consensus 101 ~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~ 180 (400)
T PRK10070 101 REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALA 180 (400)
T ss_pred HHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHh
Confidence 33444442 333445555443322111111111123445566666554322 33478999999988888888
Q ss_pred CCCcEEEEeccccccchHHH
Q 019592 147 NPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~ 166 (338)
.+++++++|||++++|+..+
T Consensus 181 ~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 181 INPDILLMDEAFSALDPLIR 200 (400)
T ss_pred cCCCEEEEECCCccCCHHHH
Confidence 99999999999999998644
No 140
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.42 E-value=1.5e-13 Score=117.85 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=88.1
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|++. .++++|| ++.++.+++|.|+||||||||++.|++.+++. |
T Consensus 8 ~~~~~~~~l~~~~~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 8 KTYGKKRVLDDISL---------------HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALR 72 (208)
T ss_pred EEECCeEeEeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHh
Confidence 445443 4788888 99999999999999999999999999987642 1
Q ss_pred -EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 77 -VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 77 -~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
+.++.++. ++..++..++..+....+. .+...+.+.++.+...... ....+|.++.+++..+.+.+.+++++
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 148 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLL 148 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 23333332 2233444443322211111 1233445555655443322 33468888888887778888999999
Q ss_pred EEeccccccchHHHh
Q 019592 153 LLEGILVFHDSRVRE 167 (338)
Q Consensus 153 Ildg~~~~~d~~~~~ 167 (338)
++|+|+.++|+....
T Consensus 149 llDEPt~~LD~~~~~ 163 (208)
T cd03268 149 ILDEPTNGLDPDGIK 163 (208)
T ss_pred EECCCcccCCHHHHH
Confidence 999999999876443
No 141
>PRK10908 cell division protein FtsE; Provisional
Probab=99.42 E-value=1.5e-13 Score=119.02 Aligned_cols=132 Identities=13% Similarity=0.033 Sum_probs=83.1
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE----------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV---------------------- 77 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~---------------------- 77 (338)
..++|+|| ++.++.+++|.|+||||||||++.|++.+++. |-
T Consensus 16 ~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 16 QALQGVTF---------------HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred eEEeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 34788888 99999999999999999999999999987652 22
Q ss_pred -EEEeCCCC-CCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 78 -VLVNQDSF-YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 78 -~~l~~D~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
.++.++.. +...+..++..+....+..........+.+.++.+...... ....+|.++.+++..+.+.+.++++++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 23333321 12233333322211111100001112233455554433222 234688888888888888889999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|+.++|+....
T Consensus 161 lDEPt~~LD~~~~~ 174 (222)
T PRK10908 161 ADEPTGNLDDALSE 174 (222)
T ss_pred EeCCCCcCCHHHHH
Confidence 99999999876443
No 142
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.41 E-value=1.4e-12 Score=105.26 Aligned_cols=144 Identities=20% Similarity=0.327 Sum_probs=92.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 129 (338)
+|+|+|++||||||+++.|++.++ +.+++.|... ..+......... ....+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~i~----~e~~~~~~~~~~------~~~~i~~~l~~~~~------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGGIR----TEEVGKLASEVA------AIPEVRKALDERQR------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CceeccccCC----HHHHHHHHHHhc------ccHhHHHHHHHHHH-------
Confidence 589999999999999999999876 7788887432 112111111100 00111111111100
Q ss_pred cccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccc-cCCCHHHHHHHHhhc
Q 019592 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQYSKF 208 (338)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~-~~~~~~~~~~~~~~~ 208 (338)
.+.....+|+||.+.... +...+|++||+++|++.+.+|+.+|.... ++.+.+...+.+...
T Consensus 61 ---------------~~~~~~~~Vidg~~~~~~--~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 61 ---------------ELAKKPGIVLEGRDIGTV--VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred ---------------HHhhCCCEEEEeeeeeeE--EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 011223478888876532 24568899999999999999999976321 255777778888887
Q ss_pred CcchhhhhccCcC-ccccEEecC
Q 019592 209 VKPAFDDFILPTK-KYADIIIPR 230 (338)
Q Consensus 209 ~~p~~~~~i~~~~-~~aD~iI~~ 230 (338)
..+.+..|+.++. ...|++|+.
T Consensus 124 d~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 124 DERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred HHHhhhcccccccCCCCcEEEeC
Confidence 7778888888876 455688854
No 143
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.41 E-value=2.6e-13 Score=117.75 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=89.4
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++ ..++|+|| +++++.+++|+|+||||||||++.|++.+++. |
T Consensus 14 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 14 GYLAGDAKILNNISF---------------SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred EEeeCCceeeeccEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH
Confidence 455644 34688888 99999999999999999999999999987641 1
Q ss_pred ----EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCC
Q 019592 77 ----VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 77 ----~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
+.++.++..+...+..++..+....... ..+...+.+.+..+.... ......+|.++.+++..+.+.+.++
T Consensus 79 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred HHhccEEEecccccccccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3344444332223444433221111111 111234455666665532 1234468888888888888888999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++|+|+|+.++|+....
T Consensus 157 ~llllDEPt~~LD~~~~~ 174 (225)
T PRK10247 157 KVLLLDEITSALDESNKH 174 (225)
T ss_pred CEEEEeCCcccCCHHHHH
Confidence 999999999999876443
No 144
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.41 E-value=1.5e-13 Score=119.62 Aligned_cols=135 Identities=14% Similarity=0.076 Sum_probs=84.4
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++ ..++|+|| ++.+|.+++|+|+||||||||+++|++.+++. |
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 7 NVYYGQSHILRGVSL---------------EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred EEEeCCeEEecceee---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHH
Confidence 345543 35789999 99999999999999999999999999988652 2
Q ss_pred -----EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhc-cCC--ccccccccCcCCccCCCCccccC
Q 019592 77 -----VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 77 -----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 147 (338)
+.++.++. ++..++..++..+....... . ......+.+..+. .+. ......+|.++.+++..+.+.+.
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~--~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPR-R--SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc-c--hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 23333332 22223333332221111110 0 1111223333332 111 22334688888888877888889
Q ss_pred CCcEEEEeccccccchHHHh
Q 019592 148 PSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~ 167 (338)
+++++++|+|+.++|+..+.
T Consensus 149 ~p~illlDEPt~~LD~~~~~ 168 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIK 168 (230)
T ss_pred CCCEEEecCCcccCCHHHHH
Confidence 99999999999999876544
No 145
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.41 E-value=1.6e-13 Score=135.21 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=104.6
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++||+|+|+++..+.+.......++|..++|+|+||||||||++.|.+.+.+. .+
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 357799999999876667888888899999999999999999999999999998762 35
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHH---------hccCCcccc----ccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------l~~~~~~~~----~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-+-+..++..++. ++..+.+.+.+.++. +..|-+..+ ..+|.|..+|+..+++
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~~~~-----~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIAYGR-----TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred eEEccCcccccccHHHHHhcCC-----CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 6777777665555555544322 222334444444433 322222111 2578888888888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++++|||++.+|+...+
T Consensus 484 ll~~~~illLDEpts~LD~~~~~ 506 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESER 506 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHH
Confidence 88999999999999999876443
No 146
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.2e-13 Score=123.62 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=85.9
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLV 80 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l 80 (338)
.|+|+|| ++.+|.+++|.|+||||||||++.|++.+.+. | +.++
T Consensus 22 ~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (279)
T PRK13650 22 TLNDVSF---------------HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMV 86 (279)
T ss_pred eeeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEE
Confidence 5677777 99999999999999999999999999988652 2 2344
Q ss_pred eCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEec
Q 019592 81 NQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (338)
Q Consensus 81 ~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg 156 (338)
.++. ++...+..++..+.....+...........+.++.+...... ....+|.++.+++..+.+.+.+++++++|+
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 166 (279)
T PRK13650 87 FQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE 166 (279)
T ss_pred EcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4432 222333333332221111111111123345556655554322 334788888888888888889999999999
Q ss_pred cccccchHHHh
Q 019592 157 ILVFHDSRVRE 167 (338)
Q Consensus 157 ~~~~~d~~~~~ 167 (338)
|+.++|+....
T Consensus 167 Pt~~LD~~~~~ 177 (279)
T PRK13650 167 ATSMLDPEGRL 177 (279)
T ss_pred CcccCCHHHHH
Confidence 99999886544
No 147
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.41 E-value=2.2e-13 Score=118.42 Aligned_cols=138 Identities=12% Similarity=0.014 Sum_probs=88.3
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCC-C-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL-----HDQ-R----------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l-----~~~-~----------- 76 (338)
.+.|++ ..++|+|| ++.+|.+++|.|+||||||||++.|++.+ .+. |
T Consensus 7 ~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 71 (227)
T cd03260 7 NVYYGDKHALKDISL---------------DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71 (227)
T ss_pred EEEcCCceeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhh
Confidence 344544 34788888 99999999999999999999999999998 541 2
Q ss_pred -----------EEEEeCCCCCCCCCHHHHHHccccCCCCcc-cccHHHHHHHHHHhccCCcc--c--cccccCcCCccCC
Q 019592 77 -----------VVLVNQDSFYHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQAV--D--IPNYDFKSYKNNV 140 (338)
Q Consensus 77 -----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~--~--~~~~~~~~~~~~~ 140 (338)
+.++.++.....++..++..+....+.... ......+.+.++.+...... . ...+|.++.+++.
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH
Confidence 233344321113344443322211111000 00123344556655443322 2 2468888888888
Q ss_pred CCccccCCCcEEEEeccccccchHHHh
Q 019592 141 FPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 141 ~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+.+.+++++++|+|++++|+....
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~ 178 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTA 178 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 888888999999999999999876543
No 148
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=2.1e-13 Score=119.55 Aligned_cols=138 Identities=9% Similarity=0.096 Sum_probs=89.1
Q ss_pred Cccccc--ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 15 ~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
.+.|++ ..++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 7 ~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 7 SKTYPNGKKALKDVSL---------------SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred EEecCCccEEEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh
Confidence 345543 45899999 99999999999999999999999999987642 2
Q ss_pred --------EEEEeCCC-CCCCCCHHHHHHccccC--------CCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCc
Q 019592 77 --------VVLVNQDS-FYHNLTEQELARVHEYN--------FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYK 137 (338)
Q Consensus 77 --------~~~l~~D~-~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~ 137 (338)
+.++.++. ++..++..++..+.... +........+.+.+.+..+...... ....+|.++.+
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 23333332 22233444433221110 0001111223444556555443222 33468888888
Q ss_pred cCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++..+.+.+.+++++|+|+|++++|+....
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~ 181 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSR 181 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 888888888999999999999999876543
No 149
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.41 E-value=1.9e-13 Score=117.60 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=86.2
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 7 ~~~~~~~~~l~~~s~---------------~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 7 HKSFGDFHVLKGIDL---------------TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred EEEECCeEeecCceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhH
Confidence 344543 34788899 99999999999999999999999999987642 2
Q ss_pred ------EEEEeCCC-CCCCCCHHHHHHccccC-CCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcccc
Q 019592 77 ------VVLVNQDS-FYHNLTEQELARVHEYN-FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 77 ------~~~l~~D~-~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++.++. ++..++..++..+.... .+.........+.+.+..+...... ....+|.++.+++..+.+.+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 22333332 12223333332221100 0000001112334455554433222 33468888888888788888
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++|+|+|+.++|+....
T Consensus 152 ~~p~llllDEP~~~LD~~~~~ 172 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVG 172 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHH
Confidence 999999999999999876543
No 150
>PRK06762 hypothetical protein; Provisional
Probab=99.41 E-value=7.1e-12 Score=103.45 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=91.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 126 (338)
++.+|+|+|++||||||+++.|++.++ .++.+++.|.+.+.+. ..++.+.....+.+.+....
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~-~~~~~i~~D~~r~~l~---------~~~~~~~~~~~~~~~~~~~~------- 63 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG-RGTLLVSQDVVRRDML---------RVKDGPGNLSIDLIEQLVRY------- 63 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEecHHHHHHHhc---------cccCCCCCcCHHHHHHHHHH-------
Confidence 368999999999999999999999885 3577887776542210 11122333332222222111
Q ss_pred ccccccCcCCccCCCCccccCCCcEEEEecccccc--c---hHHHhhcC---eEEEEecCHHHHHHHHHhhCccccCCCH
Q 019592 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH--D---SRVRELMN---MKIFVDTDADVRLARRIRRDTVEKGRDI 198 (338)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~--d---~~~~~~~d---~~i~l~~~~~~~~~R~~~R~~~~~~~~~ 198 (338)
.+.....+|+|+.+... . ..+....+ ..||+++|.+++++|...|.. .+....
T Consensus 64 ------------------~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~ 124 (166)
T PRK06762 64 ------------------GLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGE 124 (166)
T ss_pred ------------------HHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCH
Confidence 12244678888875321 1 12222232 789999999999999999964 233344
Q ss_pred HHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
+.+..+|..... ...++.+|+++. ...+++++.|.+.++
T Consensus 125 ~~l~~~~~~~~~----------~~~~~~~~~~~~---~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 125 DDMRRWWNPHDT----------LGVIGETIFTDN---LSLKDIFDAILTDIG 163 (166)
T ss_pred HHHHHHHhhcCC----------cCCCCeEEecCC---CCHHHHHHHHHHHhc
Confidence 555555555332 123566665543 345666666655543
No 151
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.9e-13 Score=122.77 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=85.6
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------------E
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------------V 77 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------------~ 77 (338)
..|+|||| ++.+|.+++|.|+||||||||+++|++.+.+. | +
T Consensus 21 ~~l~~vs~---------------~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~i 85 (287)
T PRK13637 21 KALDNVNI---------------EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKV 85 (287)
T ss_pred ceeeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhce
Confidence 35788888 99999999999999999999999999988652 2 2
Q ss_pred EEEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC--C--ccccccccCcCCccCCCCccccCCCcE
Q 019592 78 VLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG--Q--AVDIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 78 ~~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
.++.++. .+...+..++..+.....+.+.........+.++.+... . ......+|.++.+++..+.+.+.++++
T Consensus 86 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~l 165 (287)
T PRK13637 86 GLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI 165 (287)
T ss_pred EEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3333332 111223333222211111111111112344556655543 1 123347888999998888888999999
Q ss_pred EEEeccccccchHHHhh
Q 019592 152 ILLEGILVFHDSRVREL 168 (338)
Q Consensus 152 lIldg~~~~~d~~~~~~ 168 (338)
+|+|+|+.++|+..+..
T Consensus 166 lllDEPt~gLD~~~~~~ 182 (287)
T PRK13637 166 LILDEPTAGLDPKGRDE 182 (287)
T ss_pred EEEECCccCCCHHHHHH
Confidence 99999999998865443
No 152
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.41 E-value=2.1e-13 Score=118.73 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=81.9
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----CCEE------------------E
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRVV------------------L 79 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-----~~~~------------------~ 79 (338)
++|+|| +++++.+++|.|+||||||||++.|++.+++ .|-. +
T Consensus 2 l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~ 66 (230)
T TIGR02770 2 VQDLNL---------------SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIAT 66 (230)
T ss_pred ccceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEE
Confidence 678999 9999999999999999999999999999875 3322 2
Q ss_pred EeCCC---CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-----ccccccccCcCCccCCCCccccCCCcE
Q 019592 80 VNQDS---FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-----AVDIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 80 l~~D~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
+.++. |+..++..+........+..+.....+.+.+.++.+.... ......+|.++.+++..+++.+.++++
T Consensus 67 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v 146 (230)
T TIGR02770 67 IMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF 146 (230)
T ss_pred EecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 33332 1111222222111100011111111233445565554431 123346888888888888888899999
Q ss_pred EEEeccccccchHHH
Q 019592 152 ILLEGILVFHDSRVR 166 (338)
Q Consensus 152 lIldg~~~~~d~~~~ 166 (338)
+++|+|+.++|+...
T Consensus 147 llLDEPt~~LD~~~~ 161 (230)
T TIGR02770 147 LIADEPTTDLDVVNQ 161 (230)
T ss_pred EEEcCCccccCHHHH
Confidence 999999999987643
No 153
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.41 E-value=1e-13 Score=135.25 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=104.1
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++||+|+|++...+.+.....++++|..++|+|+||||||||++.|.+.+++. .+
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 468899999999876667888888899999999999999999999999999988762 35
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHH---------HHhccCCcc----ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQAV----DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l---------~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 144 (338)
.++++|.+.-+.+..++..++.... ..+.+.+.+ +.+..|-+. .-..+|.|+.+|+..+++
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~------~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDA------SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCC------CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 6777777665666666655433211 222233333 233222221 113588888888888888
Q ss_pred ccCCCcEEEEeccccccchHHH
Q 019592 145 RVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.+++++++|||++.+|+...
T Consensus 473 l~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHH
Confidence 8999999999999999887643
No 154
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.8e-13 Score=122.74 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=77.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----CEEEE--------------------eCCC--CCCCCCHHHHHHc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----RVVLV--------------------NQDS--FYHNLTEQELARV 97 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----~~~~l--------------------~~D~--~~~~l~~~~~~~~ 97 (338)
++.+|.+++|.|+||||||||++.|++.+.+. |-..+ .++. ++...+..++..+
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~ 108 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence 99999999999999999999999999998653 23333 3321 1222233222221
Q ss_pred cccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 98 HEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.............+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+.++|+....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~ 180 (282)
T PRK13640 109 GLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180 (282)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 11001000000112234445554443222 33468888888888888888999999999999999876544
No 155
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.40 E-value=1.3e-12 Score=108.71 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=115.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CE-EEEeCCCCCCCCCHHHHHHc-----cccCCCCcccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RV-VLVNQDSFYHNLTEQELARV-----HEYNFDHPDAF 108 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------~~-~~l~~D~~~~~l~~~~~~~~-----~~~~~~~~~~~ 108 (338)
..+...++|++|+.|+||||++.++.+.++.. .+ .++++|.|+ ++..++..+ ....-+.|.+|
T Consensus 115 ~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFH--lsr~~LD~f~dP~~AharRGapwTF 192 (323)
T KOG2702|consen 115 TSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFH--LSRRCLDLFKDPQTAHARRGAPWTF 192 (323)
T ss_pred cccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchh--hhHHHHHhhcChHHHHhhcCCCccc
Confidence 45667899999999999999999999876531 23 558999998 443333221 11124567889
Q ss_pred cHHHHHHHHHHhcc--CCccccccccCcCCccCCCCccccCCCcEEEEeccccccchH----HHhhcCeEEEEecCHHHH
Q 019592 109 DTEKLLSSMEKLRH--GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----VRELMNMKIFVDTDADVR 182 (338)
Q Consensus 109 ~~~~l~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~----~~~~~d~~i~l~~~~~~~ 182 (338)
|...+.+++..++. ...++.|.|+++.+..+..........+++|+||.+.+++.. ..+.+|.+.|++++.+..
T Consensus 193 D~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a 272 (323)
T KOG2702|consen 193 DSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAA 272 (323)
T ss_pred CHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHH
Confidence 99999999988884 456799999999999876666666788999999999987753 445678899999999999
Q ss_pred HHHHHhhCccc
Q 019592 183 LARRIRRDTVE 193 (338)
Q Consensus 183 ~~R~~~R~~~~ 193 (338)
.+|..+|...+
T Consensus 273 ~~RVa~RHl~s 283 (323)
T KOG2702|consen 273 EERVAKRHLQS 283 (323)
T ss_pred HHHHHHHhhcc
Confidence 99999997443
No 156
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.40 E-value=2.1e-13 Score=126.19 Aligned_cols=138 Identities=13% Similarity=0.012 Sum_probs=91.1
Q ss_pred Cccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC----------
Q 019592 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------- 82 (338)
Q Consensus 15 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~---------- 82 (338)
.+.|+... |+|+|| ++++|.+++|.|+||||||||+++|++.+.+. |-.+++.
T Consensus 31 ~~~~g~~~~l~~vsf---------------~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~ 95 (382)
T TIGR03415 31 LDETGLVVGVANASL---------------DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC 95 (382)
T ss_pred HHhhCCEEEEEeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC
Confidence 45665555 799999 99999999999999999999999999988752 3333332
Q ss_pred ------------------CC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCC
Q 019592 83 ------------------DS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (338)
Q Consensus 83 ------------------D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~ 141 (338)
+. ++..++..++..++....+.+.........+.++.+...... ....+|.++.+++..
T Consensus 96 ~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~L 175 (382)
T TIGR03415 96 DAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGL 175 (382)
T ss_pred CHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 21 112233333332221111111111223444556655554322 334689999999888
Q ss_pred CccccCCCcEEEEeccccccchHHHh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+++.+.+++++++|+|++++|+..+.
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~ 201 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRT 201 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHH
Confidence 88888999999999999999986544
No 157
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.40 E-value=2.8e-13 Score=119.98 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=89.4
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 9 ~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 9 SVRLGGRTLLDDVSL---------------TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73 (258)
T ss_pred EEEeCCeeeeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHH
Confidence 4556443 4799999 99999999999999999999999999987651 2
Q ss_pred ----EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCcccc---
Q 019592 77 ----VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRV--- 146 (338)
Q Consensus 77 ----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~--- 146 (338)
+.++.++. ++..++..++..+...............+.+.+..+..... .....+|.++.+++..+.+.+
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 33444442 22334444443332111110011112334455555544332 234578888888887777777
Q ss_pred ---CCCcEEEEeccccccchHHHh
Q 019592 147 ---NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ---~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|+|+.++|+....
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~ 177 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQH 177 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHH
Confidence 489999999999999876543
No 158
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.40 E-value=2.5e-13 Score=116.00 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=87.7
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV------------ 80 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l------------ 80 (338)
.+.|++. .++++|| +++++.+++|.|+||||||||++.|++.+++. |-..+
T Consensus 8 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 8 ACERDERILFSGLSF---------------TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred EEEECCEEEEecceE---------------EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHh
Confidence 3555444 4799999 99999999999999999999999999987752 22222
Q ss_pred -------eCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCc
Q 019592 81 -------NQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 81 -------~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
.++ .++..++..++..+....+. ..+...+.+.++.+..... .....+|.++.+++..+.+.+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 222 12222344333322211111 0122344455555544322 2334688888888877888889999
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++++|+|+.++|+....
T Consensus 150 llllDEPt~~LD~~~~~ 166 (204)
T PRK13538 150 LWILDEPFTAIDKQGVA 166 (204)
T ss_pred EEEEeCCCccCCHHHHH
Confidence 99999999999876443
No 159
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=2.9e-13 Score=111.82 Aligned_cols=136 Identities=16% Similarity=0.180 Sum_probs=93.2
Q ss_pred CCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCC
Q 019592 14 SGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFY 86 (338)
Q Consensus 14 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l~~D~~~ 86 (338)
....|+..+ |+||++ .+++..+.++.|||||||||+++.|.+.... .|-..+...+.|
T Consensus 13 l~~yYg~~~aL~~i~l---------------~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 13 LNLYYGDKHALKDINL---------------DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred eeEEECchhhhccCce---------------eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeecc
Confidence 356777766 799999 9999999999999999999999999876442 133445554555
Q ss_pred -CCCCHHHHHHccccCCCCcccccHH-----------------H----HHHHHHHhccCCcc----cc--ccccCcCCcc
Q 019592 87 -HNLTEQELARVHEYNFDHPDAFDTE-----------------K----LLSSMEKLRHGQAV----DI--PNYDFKSYKN 138 (338)
Q Consensus 87 -~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~----l~~~l~~l~~~~~~----~~--~~~~~~~~~~ 138 (338)
+..+..++....+..|+.|.-|... . ++..|......+.+ .. -.+|++..+|
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 4456666666667778777644321 1 12222222221111 11 2477788888
Q ss_pred CCCCccccCCCcEEEEeccccccchH
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+-.+++.+-.|+++++|+|++.+||-
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPI 183 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPI 183 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCch
Confidence 77777788899999999999999874
No 160
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.40 E-value=3.2e-13 Score=118.61 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=87.7
Q ss_pred Ccccc-c-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 15 GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 15 ~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
.+.|+ + ..++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 8 ~~~~~~~~~il~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 8 SKVYPNGKQALKNINL---------------NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK 72 (243)
T ss_pred eeecCCCcceeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHH
Confidence 34454 3 35788888 99999999999999999999999999987642 2
Q ss_pred --------EEEEeCCC-CCCCCCHHHHHHccccCC--------CCcccccHHHHHHHHHHhccCCcc--ccccccCcCCc
Q 019592 77 --------VVLVNQDS-FYHNLTEQELARVHEYNF--------DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYK 137 (338)
Q Consensus 77 --------~~~l~~D~-~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~ 137 (338)
+.++.++. ++..++..++..+..... ..........+.+.++.+...... ....+|.++.+
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQ 152 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 22333332 222334333332211100 000111223344555555443222 33468888889
Q ss_pred cCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++..+.+.+.+++++++|+|+.++|+....
T Consensus 153 rv~la~al~~~p~llllDEPt~~LD~~~~~ 182 (243)
T TIGR02315 153 RVAIARALAQQPDLILADEPIASLDPKTSK 182 (243)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 988888888999999999999999876443
No 161
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=2e-13 Score=122.42 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=79.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------------EEEEeCCC--CCCCCCHHHHHHcc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------------VVLVNQDS--FYHNLTEQELARVH 98 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------------~~~l~~D~--~~~~l~~~~~~~~~ 98 (338)
++.+|.+++|.|+||||||||++.|++.+++. | +.++.++. .+...+..++..+.
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 99999999999999999999999999987642 2 23333332 11122333322221
Q ss_pred ccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 99 EYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
...++.+.......+.+.++.+..... .....+|.++.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~ 178 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 111111111112334445555554332 234468888888888888888999999999999999886554
No 162
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.39 E-value=1.2e-13 Score=138.85 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=103.9
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++||+|+|++...+.+.....++++|..++|+|+||||||||++.|++.+.+. .+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 457899999999876677888888999999999999999999999999999998762 35
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHH---------HhccCCcccc----ccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDI----PNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---------~l~~~~~~~~----~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-+-+..++..++. |+ .+.+.+.+.++ .+..|-+... ..+|.|+.+|+..+++
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGA-----PY-ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCC-----CC-CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 6677776665555556554432 21 23333333333 2322222111 2578888888888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++|+|||++.+|+...+
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~ 638 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEE 638 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHH
Confidence 88999999999999999876443
No 163
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.39 E-value=2.4e-13 Score=133.70 Aligned_cols=143 Identities=11% Similarity=0.158 Sum_probs=103.9
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++|++|+|+++..+.+.....++++|..++|+|+||||||||++.|++.+++. .+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 457899999999876567888888899999999999999999999999999998762 35
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc------------ccccccCcCCccCCCCccc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV------------DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~ 145 (338)
.++++|.+.-+-+..++..++. |+ .+.+.+.+.++.....+.+ .-..+|.++.+|+..+++.
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~-----~~-~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal 490 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAA-----PN-ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred eEEcccchhhcccHHHHhhcCC-----Cc-cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH
Confidence 6677776655555555544332 22 2333444444443322211 1124788888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++|+|+|++.+|+...+
T Consensus 491 l~~~~ililDE~ts~lD~~t~~ 512 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETER 512 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHH
Confidence 9999999999999999876443
No 164
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.39 E-value=2.9e-13 Score=118.28 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=86.2
Q ss_pred ccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------
Q 019592 17 HFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------ 76 (338)
Q Consensus 17 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------------ 76 (338)
.|++. .|+|+|| ++.++.+++|+|+||||||||++.|++.+++. |
T Consensus 30 ~~~~~~il~~vs~---------------~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 94 (236)
T cd03267 30 KYREVEALKGISF---------------TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94 (236)
T ss_pred ccCCeeeeeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcc
Confidence 34444 4799999 99999999999999999999999999987642 1
Q ss_pred -EEEEe-CC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcE
Q 019592 77 -VVLVN-QD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 77 -~~~l~-~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
+.++. ++ .++..++..++..+....+..........+.+.++.+..... .....+|.++.+++..+.+.+.++++
T Consensus 95 ~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 174 (236)
T cd03267 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI 174 (236)
T ss_pred cEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22332 22 233334444433221111111111111223344444433221 23346888888888777888899999
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+++|+|+.++|+....
T Consensus 175 lllDEPt~~LD~~~~~ 190 (236)
T cd03267 175 LFLDEPTIGLDVVAQE 190 (236)
T ss_pred EEEcCCCCCCCHHHHH
Confidence 9999999999876544
No 165
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.6e-13 Score=117.01 Aligned_cols=146 Identities=10% Similarity=0.044 Sum_probs=88.7
Q ss_pred ccccCccccccCC--CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---C-CCEEEEeCCCCCCCCCHHHH
Q 019592 21 FHMDGLEVRNKET--GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---D-QRVVLVNQDSFYHNLTEQEL 94 (338)
Q Consensus 21 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~---~-~~~~~l~~D~~~~~l~~~~~ 94 (338)
++++|++|.|+.. ..+.+.....+++++.+++|+|+||||||||++.|++.+. + .|-..+...+.. ... ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~-~~~-~~~ 81 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK-EFA-EKY 81 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc-cch-hhh
Confidence 4567777777643 3345555666899999999999999999999999999987 2 233344332211 111 111
Q ss_pred HHccccCCCCcccccHHHHHHHHHHhc-cCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 95 ARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
.....+.++.+..+...-+.+.+.... .........+|.++.+++..+.+.+.+++++++|+|+.++|+..++.
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 156 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALE 156 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHH
Confidence 111223333332222111222222110 00112234678888888878888889999999999999998765443
No 166
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.39 E-value=1.9e-13 Score=137.52 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=104.4
Q ss_pred ccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 019592 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~ 76 (338)
+.+.++||+|+|++. ..+.+.....++++|..++|+|+|||||||+++.|.+.+++. .
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 357899999999864 457888888899999999999999999999999999998762 3
Q ss_pred EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHH---------HHhccCCccc----cccccCcCCccCCCCc
Q 019592 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQAVD----IPNYDFKSYKNNVFPA 143 (338)
Q Consensus 77 ~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l---------~~l~~~~~~~----~~~~~~~~~~~~~~~~ 143 (338)
+.+++||.+.-+-+..++..++... .+.+.+.+.+ +.+..|-+.. -..+|.++.+|+..++
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~------~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTD------TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCC------CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 5777888777666666766543321 1223333333 3333332211 1358888888888888
Q ss_pred cccCCCcEEEEeccccccchHH
Q 019592 144 RRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~ 165 (338)
+.+.+++++|+|||++.+|+..
T Consensus 631 ALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHhcCCCEEEEEccccccCHHH
Confidence 8899999999999999998754
No 167
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.39 E-value=3.5e-13 Score=124.51 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=92.8
Q ss_pred CCcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 14 SGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
..+.|+++.+ ++|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 5 l~~~~~~~~~-~isl---------------~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~ 68 (354)
T TIGR02142 5 FSKRLGDFSL-DADF---------------TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68 (354)
T ss_pred EEEEECCEEE-EEEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcccc
Confidence 4577877778 8999 99999999999999999999999999987652 2
Q ss_pred --------EEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 77 --------VVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 77 --------~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
+.++.++ .++..++..++..++.... ........+.+.++.+...... ....+|.++.+++..+++.
T Consensus 69 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRAL 146 (354)
T ss_pred ccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 2233333 2233344444443321111 1111122345566665554322 3347899999998888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++++|+|+.++|+..+.
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~ 168 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKY 168 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHH
Confidence 8999999999999999986543
No 168
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.39 E-value=4.4e-13 Score=116.57 Aligned_cols=131 Identities=13% Similarity=0.090 Sum_probs=83.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------E
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-----------------------V 77 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-----------------------~ 77 (338)
.++++|| ++++|.+++|.|+||||||||++.|++.+++. | +
T Consensus 20 ~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (228)
T cd03257 20 ALDDVSF---------------SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEI 84 (228)
T ss_pred eecCcee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccE
Confidence 5788888 99999999999999999999999999987641 1 3
Q ss_pred EEEeCCC---CCCCCCHHHHHHccccCCCCccc-ccHHH-HHHHHHHhccCC-c--cccccccCcCCccCCCCccccCCC
Q 019592 78 VLVNQDS---FYHNLTEQELARVHEYNFDHPDA-FDTEK-LLSSMEKLRHGQ-A--VDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 78 ~~l~~D~---~~~~l~~~~~~~~~~~~~~~~~~-~~~~~-l~~~l~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.++.++. ++..++..++..+....+..... ..... ..+.+..+.... . .....+|.++.+++..+++.+.++
T Consensus 85 ~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 164 (228)
T cd03257 85 QMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP 164 (228)
T ss_pred EEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCC
Confidence 3444443 22234444433221111110000 01111 124455544421 1 233468888888888888888999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++++|+|+.++|+....
T Consensus 165 ~lllLDEPt~~LD~~~~~ 182 (228)
T cd03257 165 KLLIADEPTSALDVSVQA 182 (228)
T ss_pred CEEEecCCCCCCCHHHHH
Confidence 999999999999876543
No 169
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=2.4e-13 Score=121.36 Aligned_cols=133 Identities=17% Similarity=0.110 Sum_probs=85.0
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEE
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVL 79 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~ 79 (338)
..++|+|| ++.+|.+++|.|+||||||||++.|++.+++. | +.+
T Consensus 19 ~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 19 KALKGLSL---------------SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eeeeeEEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 35788888 99999999999999999999999999988752 2 233
Q ss_pred EeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEe
Q 019592 80 VNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLE 155 (338)
Q Consensus 80 l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIld 155 (338)
+.++. .+...+..++..++....+.........+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 163 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34432 122223333322211111100001112334445554443222 33478888989988888889999999999
Q ss_pred ccccccchHHHhh
Q 019592 156 GILVFHDSRVREL 168 (338)
Q Consensus 156 g~~~~~d~~~~~~ 168 (338)
+|+.++|+.....
T Consensus 164 EPt~~LD~~~~~~ 176 (274)
T PRK13647 164 EPMAYLDPRGQET 176 (274)
T ss_pred CCCcCCCHHHHHH
Confidence 9999998865443
No 170
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.38 E-value=3.5e-13 Score=116.59 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=73.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEeCCCCCCCCCHHHHHHccccCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVNQDSFYHNLTEQELARVHEYNF 102 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l~~D~~~~~l~~~~~~~~~~~~~ 102 (338)
+++++.+++|.|+||||||||++.|++.+.+. | +.++.++..+...+..++... +
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~----~ 101 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDP----F 101 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCc----C
Confidence 99999999999999999999999999987652 2 233343332222222222111 1
Q ss_pred CCcccccHHHHHHHHHHhccCCc-------------cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 103 DHPDAFDTEKLLSSMEKLRHGQA-------------VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 103 ~~~~~~~~~~l~~~l~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.. .....+.+.++.+..... .....+|.++.+++..+++.+.+++++++|+|+.++|+..++
T Consensus 102 ~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~ 176 (221)
T cd03244 102 GE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 (221)
T ss_pred CC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 10 112223333332221111 123467778888877778888999999999999999876443
No 171
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.38 E-value=4.7e-13 Score=114.02 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=86.2
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC--------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-------- 84 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~-------- 84 (338)
.+.|++. .++++|| ++.+|.+++|.|+||||||||++.|++.+.+. |-..+...+
T Consensus 7 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 7 TCERDGRALFSGLSF---------------TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred EEEeCCceeeccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHh
Confidence 3455443 4799999 99999999999999999999999999987652 222222211
Q ss_pred ------------CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCc
Q 019592 85 ------------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 85 ------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
++..++..++..+.. + ......+.+.++.+..... .....+|.++.+++..+++.+.+++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWH-----A-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhc-----c-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 111222223222111 0 1123345555665544322 2334688888888888888889999
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++|+|+|+.++|+....
T Consensus 146 llllDEPt~~LD~~~~~ 162 (201)
T cd03231 146 LWILDEPTTALDKAGVA 162 (201)
T ss_pred EEEEeCCCCCCCHHHHH
Confidence 99999999999876443
No 172
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.38 E-value=5e-13 Score=118.03 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=81.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------CEEEEeCCC-CCCCCCHHHHHHccccCCCCcc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------RVVLVNQDS-FYHNLTEQELARVHEYNFDHPD 106 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~ 106 (338)
++.+|.+++|.|+||||||||++.|++.+.+. .+.++.++. ++..++..++..+.. . .
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~--~---~ 108 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGL--K---G 108 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcc--c---c
Confidence 99999999999999999999999999987652 234555553 233345555443321 0 0
Q ss_pred cccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 107 AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 107 ~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
. ....+.+.+..+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 109 ~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~ 170 (257)
T PRK11247 109 Q-WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170 (257)
T ss_pred h-HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 1 123445566665554322 33468888888888888888999999999999999876443
No 173
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=3e-13 Score=112.26 Aligned_cols=117 Identities=11% Similarity=0.185 Sum_probs=79.6
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHccc
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~ 99 (338)
..+++++| +++++.+++|.|+||||||||++.|++.+++. |-..+...+.. ............
T Consensus 16 ~~l~~i~~---------------~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~i~ 79 (171)
T cd03228 16 PVLKDVSL---------------TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR-DLDLESLRKNIA 79 (171)
T ss_pred ccccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh-hcCHHHHHhhEE
Confidence 45788888 99999999999999999999999999998753 33344332211 112222222234
Q ss_pred cCCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 100 YNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 100 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.++.+.-++. .+.+.+ +|.++.+++..+.+.+.+++++++|+|+.++|+....
T Consensus 80 ~~~~~~~~~~~-t~~e~l-------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~ 133 (171)
T cd03228 80 YVPQDPFLFSG-TIRENI-------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEA 133 (171)
T ss_pred EEcCCchhccc-hHHHHh-------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 44555432221 111111 7888888887777888999999999999999876443
No 174
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=3.5e-13 Score=119.82 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=82.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEEEEeCC-CCCCCCCHHHHHHccccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVNQD-SFYHNLTEQELARVHEYN 101 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~~l~~D-~~~~~l~~~~~~~~~~~~ 101 (338)
++.+|.+++|.|+||||||||++.|++.+++. .+.++.++ .++..++..++..+....
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYP 112 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccc
Confidence 99999999999999999999999999987641 24455555 333444555544332111
Q ss_pred C----CCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 102 F----DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 102 ~----~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
. ........+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 184 (265)
T PRK10575 113 WHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 1 001111223345556555443222 33468888888888888888999999999999999876543
No 175
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=3.1e-13 Score=120.89 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=86.6
Q ss_pred Ccccc-c-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 15 GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 15 ~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
.+.|+ + ..++++|| ++.+|.+++|.|+||||||||++.|++.+.+. |
T Consensus 10 ~~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 10 CYSYSGSKEALNNINF---------------IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR 74 (277)
T ss_pred EEEeCCCCceeeEeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 35553 2 35788888 99999999999999999999999999987652 2
Q ss_pred -----EEEEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccC
Q 019592 77 -----VVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 77 -----~~~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (338)
+.++.++. ++...+..++..+....+............+.+..+...... ....+|.++.+++..+.+.+.
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 23333332 111223333222111111100000112233445544443222 334788888888888888889
Q ss_pred CCcEEEEeccccccchHHHhh
Q 019592 148 PSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~~ 168 (338)
+++++|+|+|+.++|+.....
T Consensus 155 ~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHH
Confidence 999999999999998765443
No 176
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=3.5e-13 Score=121.20 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=82.2
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE----------------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV---------------------- 78 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~---------------------- 78 (338)
.|+|||| ++.+|.+++|.|+||||||||++.|++.+.+. |-.
T Consensus 21 ~l~~vsl---------------~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 85 (288)
T PRK13643 21 ALFDIDL---------------EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKK 85 (288)
T ss_pred ceeeeEE---------------EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhh
Confidence 5777777 99999999999999999999999999988752 222
Q ss_pred --EEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcE
Q 019592 79 --LVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 79 --~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
++.++. .+...+..+...++...+..+.......+.+.+..+.... ......+|.++.+++..+.+.+.++++
T Consensus 86 ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~i 165 (288)
T PRK13643 86 VGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEV 165 (288)
T ss_pred EEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 223321 1111122222222111111111111122334455444422 123346888888888888888899999
Q ss_pred EEEeccccccchHHHhh
Q 019592 152 ILLEGILVFHDSRVREL 168 (338)
Q Consensus 152 lIldg~~~~~d~~~~~~ 168 (338)
+|+|+|+.++|+..+..
T Consensus 166 llLDEPt~gLD~~~~~~ 182 (288)
T PRK13643 166 LVLDEPTAGLDPKARIE 182 (288)
T ss_pred EEEECCccCCCHHHHHH
Confidence 99999999998875443
No 177
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.38 E-value=3.5e-13 Score=117.88 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=90.0
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------ 75 (338)
.+.|++. .++++|| ++.+|.+++|+|+||||||||++.|++.+.+.
T Consensus 7 ~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 7 SKRFGSFQALDDVNL---------------EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD 71 (237)
T ss_pred EEEECCeeeeeeEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhh
Confidence 3455444 4688888 99999999999999999999999999987641
Q ss_pred -CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcE
Q 019592 76 -RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 76 -~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
++.+++++. ++...+..++..+.............+.+.+.++.+...... ....+|.++.+++..+++.+.++++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 234444442 333344444433221111111111223445556655443222 2346888888888777888899999
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+++|+|+.++|+...+
T Consensus 152 lllDEP~~~LD~~~~~ 167 (237)
T TIGR00968 152 LLLDEPFGALDAKVRK 167 (237)
T ss_pred EEEcCCcccCCHHHHH
Confidence 9999999999876443
No 178
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.9e-13 Score=121.78 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=79.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------------EEEEeCCC--CCCCCCHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------------VVLVNQDS--FYHNLTEQELAR 96 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------------------~~~l~~D~--~~~~l~~~~~~~ 96 (338)
++.+|.+++|.|+||||||||++.|++.+.+. | +.++.++. .+...+..++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~ 108 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDIC 108 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHH
Confidence 99999999999999999999999999987652 2 23334331 111123333222
Q ss_pred ccccCCCCcccccHHHHHHHHHHhccCCc---cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 97 VHEYNFDHPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+....+..+.......+.+.++.+..... .....+|.++.+++..+.+.+.+++++|+|+|++++|+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~ 183 (290)
T PRK13634 109 FGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE 183 (290)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 22111111111111234455666555322 2334688888888888888889999999999999998865443
No 179
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.38 E-value=3.4e-13 Score=116.58 Aligned_cols=125 Identities=17% Similarity=0.133 Sum_probs=79.1
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLV 80 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l 80 (338)
.++|+|| ++.++.+++|.|+||||||||++.|++.+++. | +.++
T Consensus 19 ~l~~i~~---------------~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (220)
T cd03245 19 ALDNVSL---------------TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYV 83 (220)
T ss_pred cccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence 5788888 99999999999999999999999999987642 2 2334
Q ss_pred eCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc-------------ccccccCcCCccCCCCccccC
Q 019592 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 81 ~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 147 (338)
.++......+..++..+... ......+.+.+..+...... ....+|.++.+++..+.+.+.
T Consensus 84 ~q~~~~~~~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 84 PQDVTLFYGTLRDNITLGAP------LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred CCCCccccchHHHHhhcCCC------CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 44322211222222221110 01112223333332221111 113688888888887888889
Q ss_pred CCcEEEEeccccccchHHHh
Q 019592 148 PSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~ 167 (338)
+++++|+|+|+.++|+....
T Consensus 158 ~p~llllDEPt~~LD~~~~~ 177 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEE 177 (220)
T ss_pred CCCEEEEeCccccCCHHHHH
Confidence 99999999999999876443
No 180
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.38 E-value=3.4e-13 Score=120.15 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=87.1
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 14 ~~~~~~~~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 14 SFTRGNRCIFDNISL---------------TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSR 78 (269)
T ss_pred EEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhh
Confidence 4455443 4688888 99999999999999999999999999987642 2
Q ss_pred -------EEEEeCCC-CCCCCCHHHHHHccccCCC-CcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccc
Q 019592 77 -------VVLVNQDS-FYHNLTEQELARVHEYNFD-HPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 77 -------~~~l~~D~-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 145 (338)
+.++.++. ++..++..++..+....+. .........+.+.+..+..... .....+|.++.+++..+++.
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral 158 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 22333332 2223344333322111110 0011111233445555544332 13346888888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++|+|+|+.++|+....
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~ 180 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMG 180 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHH
Confidence 8999999999999999876543
No 181
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=4.5e-13 Score=117.52 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=87.8
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++ ..++|+|| ++++|.+++|.|+||||||||++.|++.+++. |
T Consensus 10 ~~~~~~~~~l~~~sl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 10 AKAYKGRRVVEDVSL---------------TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74 (241)
T ss_pred EEEeCCEEEEeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 455544 34788888 99999999999999999999999999987642 2
Q ss_pred -----EEEEeCCC-CCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccC
Q 019592 77 -----VVLVNQDS-FYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 77 -----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 147 (338)
+.++.++. ++..++..++..+....... ..........+.+..+..... .....+|.++.+++..+.+.+.
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 23333332 22233444433221111100 000111234445555443322 2334688888888888888889
Q ss_pred CCcEEEEeccccccchHHHh
Q 019592 148 PSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~ 167 (338)
+++++++|+|+.++|+....
T Consensus 155 ~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred CCCEEEEcCCcccCCHHHHH
Confidence 99999999999999876543
No 182
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.38 E-value=5.2e-13 Score=114.88 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=82.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------CEEEEeCCC-CCCCCCHHHHHHccccCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------RVVLVNQDS-FYHNLTEQELARVHEYNFD 103 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------~~~~l~~D~-~~~~l~~~~~~~~~~~~~~ 103 (338)
++.+|.+++|.|+||||||||++.|++.+.+. .+.++.++. ++..++..++..+......
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~ 99 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL 99 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC
Confidence 99999999999999999999999999987652 134455552 3334455554432211000
Q ss_pred CcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 104 ~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.........+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+.++|+....
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 165 (213)
T TIGR01277 100 KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLRE 165 (213)
T ss_pred CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 00111223445566665543322 23368888888888888888999999999999999876443
No 183
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.38 E-value=4.9e-13 Score=115.85 Aligned_cols=138 Identities=17% Similarity=0.191 Sum_probs=89.1
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC---------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ--------- 82 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~--------- 82 (338)
..+.|++. .++|++| +++++.+++|+|+||||||||++.|++.+.+. |-..+..
T Consensus 28 ~~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~ 92 (224)
T cd03220 28 RKGEVGEFWALKDVSF---------------EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG 92 (224)
T ss_pred hhhhcCCeEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhccc
Confidence 34566555 4799999 99999999999999999999999999987653 2222221
Q ss_pred CCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccc
Q 019592 83 DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (338)
Q Consensus 83 D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~ 160 (338)
..++..++..++..+....+..........+.+.++.+..... .....+|.++.+++..+++.+.+++++|+|+|+.+
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1233344555544332211111111112233444444443322 23346888888888778888899999999999999
Q ss_pred cchHHH
Q 019592 161 HDSRVR 166 (338)
Q Consensus 161 ~d~~~~ 166 (338)
+|+..+
T Consensus 173 LD~~~~ 178 (224)
T cd03220 173 GDAAFQ 178 (224)
T ss_pred CCHHHH
Confidence 987643
No 184
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.38 E-value=2.6e-13 Score=134.16 Aligned_cols=142 Identities=16% Similarity=0.199 Sum_probs=103.4
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------CEE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RVV 78 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------------~~~ 78 (338)
+.+.++||+|.|+++ .+.+.....++++|..++|+|+|||||||+++.|.+.++.. .+.
T Consensus 348 ~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 348 VTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred ceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheE
Confidence 357789999877654 56778888899999999999999999999999999998321 367
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHH---------HHHHhccCCcccc----ccccCcCCccCCCCccc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHGQAVDI----PNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---------~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~ 145 (338)
+++||.+.-+-+..++..++. |+ .+.+.+.+ .+..+..|-+..+ ..+|+|+.+|+..+++.
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~-----~~-~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGN-----PD-ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCC-----CC-CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 788887776667777666543 21 22233333 3333433332211 35888899998888889
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++|+|+|++.+|+...+
T Consensus 501 l~~~~IliLDE~TSaLD~~te~ 522 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQ 522 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHH
Confidence 9999999999999999876433
No 185
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.38 E-value=3.9e-13 Score=111.36 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=59.9
Q ss_pred hcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCC----CCcHHHHHHHHH
Q 019592 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG----GDNHVAIDLIVQ 243 (338)
Q Consensus 168 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~----~~~~~~~~~~~~ 243 (338)
..|+.||++|+.++.++|+.+|+..-+-.....- ..|.......|..|+..+..+.++.|+.+ ..++.+++.++.
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~-~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~ 204 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDEN-KDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLD 204 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCcccccccch-HHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHH
Confidence 5689999999999999999999643221111222 45666677788999888777778877644 356688888998
Q ss_pred HHHHHhc
Q 019592 244 HIRTKLG 250 (338)
Q Consensus 244 ~i~~~l~ 250 (338)
+|.+.+.
T Consensus 205 ~I~~~~~ 211 (216)
T COG1428 205 QILAKLK 211 (216)
T ss_pred HHHHHHh
Confidence 8887763
No 186
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.38 E-value=5.6e-13 Score=117.35 Aligned_cols=138 Identities=10% Similarity=0.011 Sum_probs=84.9
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------CEEEEeCCCC--
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------RVVLVNQDSF-- 85 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------~~~~l~~D~~-- 85 (338)
.+.|++. .++|+|| ++++|.+++|+|+||||||||++.|++.+.+. |-..++..+.
T Consensus 8 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~ 72 (247)
T TIGR00972 8 NLFYGEKEALKNINL---------------DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72 (247)
T ss_pred EEEECCeeeecceeE---------------EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccc
Confidence 3455443 4788888 99999999999999999999999999988642 3233322111
Q ss_pred --------------------CCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccC----Ccc--ccccccCcCCcc
Q 019592 86 --------------------YHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHG----QAV--DIPNYDFKSYKN 138 (338)
Q Consensus 86 --------------------~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~----~~~--~~~~~~~~~~~~ 138 (338)
....+..++..+....... +.........+.++.+... ... ....+|.++.++
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQR 152 (247)
T ss_pred cccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHH
Confidence 1112222222211100100 0001112334445555443 211 234688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+++.+.+++++++|+|+.++|+....
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~ 181 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATG 181 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 88888888999999999999999876443
No 187
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=4e-13 Score=117.31 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=91.3
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------- 75 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------- 75 (338)
.+.|++..+++++| ++.++.+++|.|+||||||||++.|++.+++.
T Consensus 7 ~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 7 SKDWKEFKLKNVSL---------------EVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71 (235)
T ss_pred EEEeCCceeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHc
Confidence 34454446888999 99999999999999999999999999987752
Q ss_pred CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 76 RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 76 ~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
.+.++.++. ++..++..++..+...............+.+.+..+...... ....+|.++.+++..+.+.+.+++++
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 151 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKIL 151 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 244555553 333455555443321111111111122334555555443322 23368888888888888888999999
Q ss_pred EEeccccccchHHHh
Q 019592 153 LLEGILVFHDSRVRE 167 (338)
Q Consensus 153 Ildg~~~~~d~~~~~ 167 (338)
++|+|+.++|+...+
T Consensus 152 llDEPt~gLD~~~~~ 166 (235)
T cd03299 152 LLDEPFSALDVRTKE 166 (235)
T ss_pred EECCCcccCCHHHHH
Confidence 999999999876544
No 188
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.37 E-value=4.1e-13 Score=117.67 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=87.5
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++|+|| ++.+|.+++|+|+||||||||++.|++.+.+. |
T Consensus 8 ~~~~~~~~il~~~s~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 8 SKHFGPTQVLHNIDL---------------NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEECCeEEeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhH
Confidence 3455443 4799999 99999999999999999999999999987642 2
Q ss_pred ------EEEEeCCC-CCCCCCHHHHHHccccC-CCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcccc
Q 019592 77 ------VVLVNQDS-FYHNLTEQELARVHEYN-FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 77 ------~~~l~~D~-~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++.++. ++..++..++..+.... ...........+.+.++.+...... ....+|.++.+++..+.+.+
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 23333332 22233433333221110 0000111122344555555443222 23368888888887788888
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|+|+.++|+..+.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~ 173 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRH 173 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHH
Confidence 999999999999999876544
No 189
>COG4240 Predicted kinase [General function prediction only]
Probab=99.37 E-value=3.2e-12 Score=106.33 Aligned_cols=119 Identities=23% Similarity=0.380 Sum_probs=90.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---CEEEEeCCCCCCCCCHHHHHHcccc------CCCCcccccHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---RVVLVNQDSFYHNLTEQELARVHEY------NFDHPDAFDTEKLL 114 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---~~~~l~~D~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~l~ 114 (338)
+.++|.++||+||.||||||++..|...|... .+..++.|+|| ++..+...+..- .-+.|++.|.....
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY--lthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY--LTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh--cchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 34679999999999999999999888776543 46899999999 555554333222 23568999999999
Q ss_pred HHHHHhccCCc-cccccccC----cCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 115 SSMEKLRHGQA-VDIPNYDF----KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 115 ~~l~~l~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+.|+.+..+.. +.+|.|++ +.+.|.....+...+.+++|+|||+.+.+|.
T Consensus 124 nVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrPi 178 (300)
T COG4240 124 NVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRPI 178 (300)
T ss_pred HHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeecccC
Confidence 99999988864 58899998 4455533333444558999999999987664
No 190
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.37 E-value=6.5e-13 Score=117.15 Aligned_cols=138 Identities=16% Similarity=0.098 Sum_probs=86.4
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE---------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV--------------- 77 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~--------------- 77 (338)
.+.|++ ..++|+|| ++.+|.+++|+|+||||||||++.|++.+.+. |-
T Consensus 10 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 10 VKKFHGQTVLHGIDL---------------EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74 (250)
T ss_pred EEEECCeeeeccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcccccccc
Confidence 455544 34788888 99999999999999999999999999987642 22
Q ss_pred -------------EEEeCCC-CCCCCCHHHHHHccccCC-CCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCC
Q 019592 78 -------------VLVNQDS-FYHNLTEQELARVHEYNF-DHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNV 140 (338)
Q Consensus 78 -------------~~l~~D~-~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~ 140 (338)
.++.++. ++...+..++..+....+ ..........+.+.+..+..... .....+|.++.+++.
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence 2222321 122233333322211000 00111112233445555444322 233468888888888
Q ss_pred CCccccCCCcEEEEeccccccchHHHh
Q 019592 141 FPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 141 ~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+.+.+++++|+|+|+.++|+..+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~ 181 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVG 181 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 888888999999999999999876443
No 191
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=5.6e-13 Score=116.85 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=85.9
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|++ ..++|+|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 11 ~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 75 (241)
T PRK14250 11 YSSFGKEILKDISV---------------KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75 (241)
T ss_pred EEeCCeeeeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHh
Confidence 44533 34688888 99999999999999999999999999987652 2
Q ss_pred ---EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCc
Q 019592 77 ---VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 77 ---~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
+.++.++..+...+..++..+..... ......+.+.+..+.... ......+|.++.+++..+.+.+.+++
T Consensus 76 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 76 RRKIGMVFQQPHLFEGTVKDNIEYGPMLK----GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred hhcEEEEecCchhchhhHHHHHhcchhhc----CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 23344442221122222222111100 011233445566555431 12334688888888888888889999
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++|+|+|+.++|+....
T Consensus 152 llllDEPt~~LD~~~~~ 168 (241)
T PRK14250 152 VLLLDEPTSALDPTSTE 168 (241)
T ss_pred EEEEeCCcccCCHHHHH
Confidence 99999999999876443
No 192
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.37 E-value=3e-13 Score=133.60 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=101.2
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEE
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVV 78 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~ 78 (338)
.+.++|++|+|++. .+.+.....+.++|..++|+|+||||||||++.|.+.+.|. .+.
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 58899999999753 45788888899999999999999999999999999998762 456
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHH---------HHHHHhccCCccc----cccccCcCCccCCCCccc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL---------SSMEKLRHGQAVD----IPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~---------~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 145 (338)
++++|.+.-+-+..++..++. |+ .+.+.+. +.+..+..|-+.. -..+|.|..+|+..+++.
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~-----~~-~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGR-----PD-ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred EEecCcccccccHHHHHhcCC-----CC-CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 777776665555666554432 21 1122222 2233333332221 135888888998888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++|+|+|++.+|+....
T Consensus 487 l~~~~iliLDEpts~LD~~t~~ 508 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEA 508 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHH
Confidence 9999999999999999876433
No 193
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=4e-13 Score=124.02 Aligned_cols=133 Identities=10% Similarity=0.075 Sum_probs=89.4
Q ss_pred cCCcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE-----------
Q 019592 13 SSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV----------- 80 (338)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l----------- 80 (338)
+..+.|+++.+ |+|| ++.++.+++|.|+||||||||+++|++.+++. |-..+
T Consensus 5 ~l~k~~~~~~~-~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 5 NFKQQLGDLCL-TVNL---------------TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred EEEEEeCCEEE-EEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccc
Confidence 44577877665 8999 99999999999999999999999999987652 22222
Q ss_pred -------------eCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcc
Q 019592 81 -------------NQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 81 -------------~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 144 (338)
.++. ++..++..++..++. . ......+.+.++.+...... ....+|.++.+|+..+++
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~-----~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalara 142 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGM-----A-KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRA 142 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhh-----h-hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 2221 112223333222110 0 01123445566665554322 334788899999888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++++|+|+.++|+..+.
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~ 165 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHH
Confidence 88999999999999999886544
No 194
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=4e-13 Score=118.82 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=89.6
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------- 76 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------------- 76 (338)
+..+.|++. .|+++|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 10 ~l~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 10 GLMMRFGGLLAVNNVNL---------------EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEEECCEEEEEeeee---------------EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH
Confidence 334556443 4688888 99999999999999999999999999987641 1
Q ss_pred -------EEEEeCCC-CCCCCCHHHHHHccccC----------CCCcc-----cccHHHHHHHHHHhccCCc--cccccc
Q 019592 77 -------VVLVNQDS-FYHNLTEQELARVHEYN----------FDHPD-----AFDTEKLLSSMEKLRHGQA--VDIPNY 131 (338)
Q Consensus 77 -------~~~l~~D~-~~~~l~~~~~~~~~~~~----------~~~~~-----~~~~~~l~~~l~~l~~~~~--~~~~~~ 131 (338)
+.++.++. ++..++..++..+.... ++.+. ........+.++.+..... .....+
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 23334442 33344555543322110 10000 0011233344555443322 233468
Q ss_pred cCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
|.++.+++..+.+.+.+++++|+|+|+.++|+..+.
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 190 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHH
Confidence 888888888888888999999999999999876544
No 195
>PRK01184 hypothetical protein; Provisional
Probab=99.37 E-value=6.4e-12 Score=105.54 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=81.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccc
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 127 (338)
+.+|+|+|++||||||+++ +++.+ ++.+++.++..+... ... . .............+....+. ..+
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~---g~~~i~~~d~lr~~~----~~~-~--~~~~~~~~g~~~~~~~~~~~--~~~- 66 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREM---GIPVVVMGDVIREEV----KKR-G--LEPTDENIGKVAIDLRKELG--MDA- 66 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHc---CCcEEEhhHHHHHHH----HHc-C--CCCCcHHHHHHHHHHHHHHC--hHH-
Confidence 3589999999999999998 45554 477888765542211 000 0 10000000000011111100 000
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccch-HHHhhcC---eEEEEecCHHHHHHHHHhhCccccCCCHHHHHH
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS-RVRELMN---MKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~-~~~~~~d---~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (338)
+....... ....+..++|+|++....+. .+++.++ .+|+|++|.+++.+|+..|+....+.+.+.+..
T Consensus 67 ---~~~~~~~~-----i~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~ 138 (184)
T PRK01184 67 ---VAKRTVPK-----IREKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEE 138 (184)
T ss_pred ---HHHHHHHH-----HHhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHH
Confidence 00000000 01124578999997533222 3334455 899999999999999998864322223344443
Q ss_pred HHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
......... ..+....||++|+|+++
T Consensus 139 r~~~q~~~~----~~~~~~~ad~vI~N~~~ 164 (184)
T PRK01184 139 RDERELSWG----IGEVIALADYMIVNDST 164 (184)
T ss_pred HHHHHhccC----HHHHHHhcCEEEeCCCC
Confidence 322211001 11224789999987753
No 196
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=5.8e-13 Score=116.10 Aligned_cols=138 Identities=20% Similarity=0.178 Sum_probs=87.3
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|++. .+++++| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 8 ~~~~~~~il~~i~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 8 KFYGGFVALDGVSL---------------DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKR 72 (232)
T ss_pred EEeCCeeeeccceE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhc
Confidence 444443 4688888 99999999999999999999999999998752 2
Q ss_pred -EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 77 -VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 77 -~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
+.++.++. ++..++..++..+...............+.+.+..+...... ....+|.++.+++..+++.+.+++++
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll 152 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 23333332 222334433332211111100111122333445544443322 33468888888887788888999999
Q ss_pred EEeccccccchHHHhh
Q 019592 153 LLEGILVFHDSRVREL 168 (338)
Q Consensus 153 Ildg~~~~~d~~~~~~ 168 (338)
++|+|+.++|+..++.
T Consensus 153 llDEP~~gLD~~~~~~ 168 (232)
T cd03300 153 LLDEPLGALDLKLRKD 168 (232)
T ss_pred EEcCCcccCCHHHHHH
Confidence 9999999998765443
No 197
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.37 E-value=7.2e-13 Score=116.30 Aligned_cols=138 Identities=16% Similarity=0.135 Sum_probs=89.7
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++++|| ++.+|.+++|.|+||||||||+++|++.+.+. |
T Consensus 9 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 9 SVSFDGFKALNDLSL---------------YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEcCCeEEeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHH
Confidence 4555443 4788888 99999999999999999999999999987641 1
Q ss_pred -----EEEEeCCC-CCCCCCHHHHHHccccCCC--------CcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCC
Q 019592 77 -----VVLVNQDS-FYHNLTEQELARVHEYNFD--------HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNV 140 (338)
Q Consensus 77 -----~~~l~~D~-~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~ 140 (338)
+.++.++. ++..++..++..+...... .........+.+.+..+...... ....+|.++.+++.
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 33344432 2233444444332211000 00011223345556655544322 33468888888888
Q ss_pred CCccccCCCcEEEEeccccccchHHHh
Q 019592 141 FPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 141 ~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+.+.+++++++|+|++++|+....
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~ 180 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETE 180 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHH
Confidence 888888999999999999999886543
No 198
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.37 E-value=7e-13 Score=117.17 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=86.0
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----CC-------------
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QR------------- 76 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-----~~------------- 76 (338)
.+.|+...++++|| ++.+|.+++|.|+||||||||++.|++.+++ .|
T Consensus 11 ~~~~~~~il~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 11 ALQAAQPLVHGVSL---------------TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEeccceecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccc
Confidence 34443345677777 9999999999999999999999999998764 12
Q ss_pred -----EEEEeCCCC--C-CCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-----ccccccccCcCCccCCCCc
Q 019592 77 -----VVLVNQDSF--Y-HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-----AVDIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 77 -----~~~l~~D~~--~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~~ 143 (338)
+.++.++.. + ...+..+........+.. ......+.+.++.+.... ......+|.++.+++..+.
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK--PADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCC--ChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 233344421 1 112221211110000111 011234455666655443 1233468888888888888
Q ss_pred cccCCCcEEEEeccccccchHHHh
Q 019592 144 RRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+.+++++|+|+|+.++|+..+.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~ 177 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQA 177 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHH
Confidence 888999999999999999876443
No 199
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=5.9e-13 Score=116.05 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=81.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------CEEEEeCCC-CCCCCCHHHHHHccccCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------RVVLVNQDS-FYHNLTEQELARVHEYNFD 103 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------~~~~l~~D~-~~~~l~~~~~~~~~~~~~~ 103 (338)
++.+|.+++|+|+||||||||++.|++.+.+. .+.++.++. ++..++..++..+......
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 100 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL 100 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc
Confidence 89999999999999999999999999987641 234555543 3334455554433211000
Q ss_pred CcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 104 ~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.....+...+.+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+...
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 101 KLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred CCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 00112233455566655443322 2336888888888888888899999999999999987643
No 200
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=4.4e-13 Score=118.42 Aligned_cols=138 Identities=11% Similarity=0.016 Sum_probs=82.6
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----C-CCE----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH-----D-QRV---------- 77 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~-----~-~~~---------- 77 (338)
.+.|++ ..++++|| ++.+|.+++|+|+||||||||++.|++.++ + .|-
T Consensus 13 ~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 13 SFFYGDFQALHDISL---------------EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred EEEECCeeeecceeE---------------EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 445543 34688888 999999999999999999999999998753 1 222
Q ss_pred ------------EEEeCCCCCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 78 ------------VLVNQDSFYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 78 ------------~~l~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
.++.++......+..++..+....... +.....+.+.+.++.+.... ......+|.++.++
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 233333211112333322221110100 00011123334444433321 11234688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+++.+.+++++++|+|+.++|+....
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~ 186 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQ 186 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 87788888999999999999999876543
No 201
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=5.9e-13 Score=117.76 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=90.4
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------ 75 (338)
.+.|++. .++++|| ++++|.+++|.|+||||||||++.|++.+++.
T Consensus 9 ~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 9 TVGYGTKRILNDLSL---------------SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEECCEEEEeeeee---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHH
Confidence 3455443 4788888 99999999999999999999999999987641
Q ss_pred ---CEEEEeCCCC-CCCCCHHHHHHcccc----CCCCcccccHHHHHHHHHHhccCC--ccccccccCcCCccCCCCccc
Q 019592 76 ---RVVLVNQDSF-YHNLTEQELARVHEY----NFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 76 ---~~~~l~~D~~-~~~l~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 145 (338)
.+.++.++.. +..++..++..++.. .+......+...+.+.+..+.... ......+|.++.+++..+.+.
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHH
Confidence 1344445432 233444444433211 011111112233445555544432 223346888898888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++++|+|+.++|+....
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~ 175 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQV 175 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHH
Confidence 8999999999999999876544
No 202
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=5.9e-13 Score=121.53 Aligned_cols=130 Identities=12% Similarity=0.153 Sum_probs=84.6
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----CCEEEEeCCCCCCCCCHHHHHH
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRVVLVNQDSFYHNLTEQELAR 96 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-----~~~~~l~~D~~~~~l~~~~~~~ 96 (338)
.|+|||| ++++|.++||.|+||||||||++.|++.+.+ .|-..+...+.. .+...+...
T Consensus 22 ~l~~vsl---------------~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~-~~~~~~~~~ 85 (326)
T PRK11022 22 AVDRISY---------------SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQ-RISEKERRN 85 (326)
T ss_pred EEeeeEE---------------EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECC-cCCHHHHHH
Confidence 5899999 9999999999999999999999999998863 122233222211 111111111
Q ss_pred ----ccccCCCCc-------------------------ccccHHHHHHHHHHhccCCc-----cccccccCcCCccCCCC
Q 019592 97 ----VHEYNFDHP-------------------------DAFDTEKLLSSMEKLRHGQA-----VDIPNYDFKSYKNNVFP 142 (338)
Q Consensus 97 ----~~~~~~~~~-------------------------~~~~~~~l~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~~ 142 (338)
...+.|++| .....+...+.++.+..... ...-.+|.++.+|+..+
T Consensus 86 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iA 165 (326)
T PRK11022 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIA 165 (326)
T ss_pred HhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence 011222221 11112334555666555421 12337899999998888
Q ss_pred ccccCCCcEEEEeccccccchHHHh
Q 019592 143 ARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+.+++++|+|||+.++|+....
T Consensus 166 rAL~~~P~llilDEPts~LD~~~~~ 190 (326)
T PRK11022 166 MAIACRPKLLIADEPTTALDVTIQA 190 (326)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 8889999999999999999886544
No 203
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=4.2e-13 Score=120.63 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=84.3
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------------ 76 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------------------ 76 (338)
.++|+|| ++++|.+++|.|+||||||||+++|++.+++. |
T Consensus 22 ~l~~vsl---------------~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 86 (287)
T PRK13641 22 GLDNISF---------------ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKK 86 (287)
T ss_pred ceeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhc
Confidence 5788888 99999999999999999999999999987752 2
Q ss_pred EEEEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC-C--ccccccccCcCCccCCCCccccCCCcE
Q 019592 77 VVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 77 ~~~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
+.++.++. .+..++..++..+....+..........+.+.+..+... . ......+|.++.+++..+.+.+.++++
T Consensus 87 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~l 166 (287)
T PRK13641 87 VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEI 166 (287)
T ss_pred eEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 22333331 011223333222211111111111122344555555543 1 123447888999998888888899999
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+|+|+|+.++|+....
T Consensus 167 LlLDEPt~gLD~~~~~ 182 (287)
T PRK13641 167 LCLDEPAAGLDPEGRK 182 (287)
T ss_pred EEEECCCCCCCHHHHH
Confidence 9999999999876544
No 204
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=4.6e-13 Score=120.09 Aligned_cols=125 Identities=12% Similarity=0.003 Sum_probs=77.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------------EEEEeCCC--CCCCCCHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------------VVLVNQDS--FYHNLTEQELAR 96 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------------------~~~l~~D~--~~~~l~~~~~~~ 96 (338)
++++|.+++|.|+||||||||++.|++.+.+. | +.++.++. .+...+..++..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~ 108 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVA 108 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHH
Confidence 99999999999999999999999999987652 2 22333331 111123333222
Q ss_pred ccccCCCCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 97 VHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+....+..........+.+.++.+.... ......+|.++.+++..+.+.+.+++++|+|+|++++|+..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 183 (280)
T PRK13649 109 FGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183 (280)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1111111000001122334455544432 12334688888888888888889999999999999998865443
No 205
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.36 E-value=5.9e-13 Score=113.19 Aligned_cols=133 Identities=10% Similarity=0.045 Sum_probs=84.8
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++++|| ++.++.+++|+|+||||||||++.|++.+++. |
T Consensus 7 ~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 7 ACSRGERMLFEGLSF---------------TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred EEEECCEEEEeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHh
Confidence 3455443 4799999 99999999999999999999999999987652 2
Q ss_pred ---EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 77 ---VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 77 ---~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
+.++.++. ++..++..++..+...... .+...+.+.++.+...... ....+|.++.+++..+.+.+.+++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 12222221 1122333333222111111 0112344455554443222 234688888888877788889999
Q ss_pred EEEEeccccccchHHH
Q 019592 151 VILLEGILVFHDSRVR 166 (338)
Q Consensus 151 vlIldg~~~~~d~~~~ 166 (338)
++++|+|+.++|+...
T Consensus 148 llllDEPt~~LD~~~~ 163 (198)
T TIGR01189 148 LWILDEPTTALDKAGV 163 (198)
T ss_pred EEEEeCCCcCCCHHHH
Confidence 9999999999987543
No 206
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.36 E-value=7e-13 Score=115.13 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---C-C-----------------CEEEEeCCC-CCCCCCHHHHHHccccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH---D-Q-----------------RVVLVNQDS-FYHNLTEQELARVHEYN 101 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~---~-~-----------------~~~~l~~D~-~~~~l~~~~~~~~~~~~ 101 (338)
++.++.+++|+|+||||||||++.|++.+. + . ++.++.++. ++..++..++..+....
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 108 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL 108 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHh
Confidence 999999999999999999999999999887 3 1 234455543 33445555554432211
Q ss_pred CCC---cccccHHHHHH-HHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 102 FDH---PDAFDTEKLLS-SMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 102 ~~~---~~~~~~~~l~~-~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
... ..........+ .+..+..... .....+|.++.+++..+.+.+.+++++++|+|+.++|+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~ 181 (226)
T cd03234 109 RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALN 181 (226)
T ss_pred hcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHH
Confidence 110 11111111222 3444433221 1334688888888877788889999999999999998765443
No 207
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=8e-13 Score=116.57 Aligned_cols=138 Identities=15% Similarity=0.059 Sum_probs=88.8
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CC-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR----------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~----------- 76 (338)
.+.|++ ..++++|| ++++|.+++|+|+||||||||++.|++.+.+ .|
T Consensus 10 ~~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 10 KVSFGQVEVLDGVNL---------------EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred EEEECCeeeeeccee---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 345544 34788888 9999999999999999999999999998752 22
Q ss_pred ---------EEEEeCCC-CCCCCCHHHHHHccccCCC--CcccccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 77 ---------VVLVNQDS-FYHNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 77 ---------~~~l~~D~-~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
+.++.++. ++..++..++..+...... .+..-....+.+.++.+.... ......+|.++.++
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH
Confidence 33444443 2334455444432211000 011111223445555554321 12334688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+++.+.+++++++|+|+.++|+....
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~ 183 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTA 183 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 88888888999999999999999876443
No 208
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=4e-13 Score=119.87 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=83.3
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY------ 86 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~------ 86 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+.+. |-..++..+..
T Consensus 8 ~~~~~~~~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 8 WFRYQDEPVLKGLNL---------------DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred EEEcCCcccccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCH
Confidence 345544 35788888 99999999999999999999999999988752 22223221111
Q ss_pred ------------------CCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCcccc
Q 019592 87 ------------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 87 ------------------~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 146 (338)
...+..++..+....++.........+.+.++.+..... .....+|.++.+++..+.+.+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 001111111110000000000011223334444433221 233468888888888888888
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|+|+.++|+..+.
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~ 173 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRT 173 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHH
Confidence 999999999999999876544
No 209
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=4.9e-13 Score=119.60 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=79.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEEEEeCCC--CCCCCCHHHHHHcccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVNQDS--FYHNLTEQELARVHEY 100 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~~l~~D~--~~~~l~~~~~~~~~~~ 100 (338)
++.+|.+++|+|+||||||||++.|++.+++. ++.++.++. ++...+..++..+...
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGME 108 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHH
Confidence 99999999999999999999999999987651 134555542 2333444443332211
Q ss_pred CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..........+...+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~ 177 (277)
T PRK13642 109 NQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11111100112233444443332211 23368888888888888888999999999999999886544
No 210
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.3e-13 Score=126.94 Aligned_cols=137 Identities=16% Similarity=0.276 Sum_probs=97.0
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCEEEEe
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVLVN 81 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~~~l~ 81 (338)
+.+++++|++.. +.+..-..+.+++..++|+|+|||||||+.+.|++.+++ +.+..++
T Consensus 323 ~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~ 401 (559)
T COG4988 323 LENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401 (559)
T ss_pred ecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence 459999998776 777777789999999999999999999999999999885 2356666
Q ss_pred CCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--------cc----ccccCcCCccCCCCccccCCC
Q 019592 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--------DI----PNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 82 ~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~ 149 (338)
++.+...-+..++..++. |+ ...+.+.+.++.....+.+ .+ ..+|.+..+|+..+++.+.++
T Consensus 402 Q~p~lf~gTireNi~l~~-----~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 402 QNPYLFAGTIRENILLAR-----PD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred CCCccccccHHHHhhccC-----Cc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 666665555555554433 22 2223333444332222111 11 237778888888888888999
Q ss_pred cEEEEeccccccchHHH
Q 019592 150 DVILLEGILVFHDSRVR 166 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~ 166 (338)
+++++|||++.+|.+..
T Consensus 476 ~l~llDEpTA~LD~etE 492 (559)
T COG4988 476 SLLLLDEPTAHLDAETE 492 (559)
T ss_pred CEEEecCCccCCCHhHH
Confidence 99999999999876543
No 211
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.36 E-value=6.1e-13 Score=115.75 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=81.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE---------------EEEeCCC-CCCCCCHHHHHHccccC-C-CC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV---------------VLVNQDS-FYHNLTEQELARVHEYN-F-DH 104 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~---------------~~l~~D~-~~~~l~~~~~~~~~~~~-~-~~ 104 (338)
++.+|.+++|+|+||||||||++.|++.+.+. |- .++.++. ++..++..++..+.... + ..
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 86 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDL 86 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999988752 22 2333332 22334555544332110 1 11
Q ss_pred cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 105 PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 105 ~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
......+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 87 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 87 SKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 1111122345556655443322 33468888999888888888999999999999999876544
No 212
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2.5e-13 Score=113.49 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=82.3
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCC--H
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLT--E 91 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~--~ 91 (338)
+.|++ ..+++++| ++.++.+++|.|+||||||||++.|++.+++. |-..++..+.. ... .
T Consensus 8 ~~~~~~~~l~~i~~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~ 71 (178)
T cd03229 8 KRYGQKTVLNDVSL---------------NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT-DLEDEL 71 (178)
T ss_pred EEECCeEEEeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-ccchhH
Confidence 34433 34788888 99999999999999999999999999988753 33444332221 111 1
Q ss_pred HHHHHccccCCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 92 QELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
........+.++.+..+....+.+.+. . .+|.++.+++..+.+.+.+++++++|+|+.++|+....
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~---~-------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~ 137 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIA---L-------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHhee---e-------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 222223344444443222111112111 0 17888888888888888999999999999999876544
No 213
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=4.4e-13 Score=119.66 Aligned_cols=131 Identities=12% Similarity=0.092 Sum_probs=82.9
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE---------------------EE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV---------------------VL 79 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~---------------------~~ 79 (338)
.|+|||| ++.+|.+++|.|+||||||||++.|++.+.+. |- .+
T Consensus 17 ~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 17 ALENINL---------------VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred eeeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 5788888 99999999999999999999999999987752 22 22
Q ss_pred EeCCCC--CCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEe
Q 019592 80 VNQDSF--YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLE 155 (338)
Q Consensus 80 l~~D~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIld 155 (338)
+.++.. +...+..++..+....+..+.......+.+.+..+...... ....+|.++.+++..+.+.+.+++++++|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 161 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 333211 11222222222111111100001112334445555443322 33468888888888888888999999999
Q ss_pred ccccccchHHHh
Q 019592 156 GILVFHDSRVRE 167 (338)
Q Consensus 156 g~~~~~d~~~~~ 167 (338)
+|+.++|+..+.
T Consensus 162 EPt~gLD~~~~~ 173 (274)
T PRK13644 162 EVTSMLDPDSGI 173 (274)
T ss_pred CCcccCCHHHHH
Confidence 999999876543
No 214
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=5.7e-13 Score=119.38 Aligned_cols=125 Identities=14% Similarity=0.027 Sum_probs=77.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-----------------------CCCCHHHHHHccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-----------------------HNLTEQELARVHE 99 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~-----------------------~~l~~~~~~~~~~ 99 (338)
++++|.+++|+|+||||||||++.|++.+.+. |-..++..+.. ...+..+...+..
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~ 111 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGP 111 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhH
Confidence 99999999999999999999999999988752 22333221111 1111111111111
Q ss_pred cCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 100 YNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 100 ~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
...+.+.......+.+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+..+..
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 112 ENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred hhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 000101111112334445544443222 334788888888888888889999999999999998875544
No 215
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=9.1e-13 Score=127.82 Aligned_cols=137 Identities=10% Similarity=0.095 Sum_probs=92.4
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCE-----------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRV----------- 77 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---~~~----------- 77 (338)
+..+.|++. .++|||| ++..|.+++|+|+||||||||+++|++.+++ .|-
T Consensus 10 nl~~~~~~~~il~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 10 NITKTFGGVKALDNVSL---------------KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS 74 (506)
T ss_pred eeEEEeCCeEeecceeE---------------EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC
Confidence 345667554 4799999 9999999999999999999999999998874 232
Q ss_pred ----------EEEeCCC-CCCCCCHHHHHHccccCC--CC-cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCC
Q 019592 78 ----------VLVNQDS-FYHNLTEQELARVHEYNF--DH-PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (338)
Q Consensus 78 ----------~~l~~D~-~~~~l~~~~~~~~~~~~~--~~-~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~ 141 (338)
.++.++. ++..++..++..+..... .. +.......+.+.++.+...... ....+|.++.+++..
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 3333332 223344444433221111 00 0011123455667766654322 345799999999888
Q ss_pred CccccCCCcEEEEeccccccchH
Q 019592 142 PARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+.+.+.+++++|+|||++++|+.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHH
Confidence 88888999999999999999985
No 216
>PRK06217 hypothetical protein; Validated
Probab=99.35 E-value=1.6e-11 Score=103.06 Aligned_cols=106 Identities=22% Similarity=0.361 Sum_probs=70.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 128 (338)
..|+|+|++||||||+++.|++.++ +.+++.|.+++.... ..+...... .......+..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~-------- 61 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWLPTD--------PPFTTKRPP-EERLRLLLEDL-------- 61 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeeccCC--------CCccccCCH-HHHHHHHHHHH--------
Confidence 5699999999999999999999886 789999988743210 001000100 01111111111
Q ss_pred ccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCcc
Q 019592 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTV 192 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~ 192 (338)
...+-+|+||.+..+...+...+|.+|||++|.+++++|+..|...
T Consensus 62 ------------------~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 62 ------------------RPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred ------------------hcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 1122468888776544556778999999999999999999998743
No 217
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.35 E-value=1.1e-12 Score=111.82 Aligned_cols=132 Identities=13% Similarity=0.033 Sum_probs=85.4
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE-------------
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV------------- 80 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l------------- 80 (338)
+.|++ ..++++|| ++++|.+++|.|+||||||||++.|++.+++. |-..+
T Consensus 9 ~~~~~~~il~~~s~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 9 FDYHDQPLLQQISF---------------HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEeCCeeEEeeeeE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHH
Confidence 44544 34788888 99999999999999999999999999987652 22222
Q ss_pred ------eCCCC-CCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcE
Q 019592 81 ------NQDSF-YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 81 ------~~D~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
.++.. +...+..++..+..... .+...+.+.+..+...... ....+|.++.+++..+.+.+.++++
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 22211 12233333322211000 0112345566655544322 2236888888888888888899999
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+|+|+|+.++|+....
T Consensus 149 lilDEP~~~LD~~~~~ 164 (200)
T PRK13540 149 WLLDEPLVALDELSLL 164 (200)
T ss_pred EEEeCCCcccCHHHHH
Confidence 9999999999876443
No 218
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=6.4e-13 Score=120.18 Aligned_cols=125 Identities=12% Similarity=0.020 Sum_probs=77.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC------------C-----------CCHHHHHHccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH------------N-----------LTEQELARVHE 99 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~------------~-----------l~~~~~~~~~~ 99 (338)
++.+|.+++|+|+||||||||++.|++.+++. |-..+...+... . ...........
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 108 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVG 108 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceE
Confidence 99999999999999999999999999988752 223332111000 0 00111111122
Q ss_pred cCCCCcc-----------------------cccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEE
Q 019592 100 YNFDHPD-----------------------AFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 100 ~~~~~~~-----------------------~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
+.|++|. ........+.+..+.... ......+|.++.+++..+.+.+.+++++|
T Consensus 109 ~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLl 188 (305)
T PRK13651 109 VVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLV 188 (305)
T ss_pred EEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 2233221 111123445555555431 12334688888888888888889999999
Q ss_pred EeccccccchHHHhh
Q 019592 154 LEGILVFHDSRVREL 168 (338)
Q Consensus 154 ldg~~~~~d~~~~~~ 168 (338)
+|+|++++|+.....
T Consensus 189 LDEPt~~LD~~~~~~ 203 (305)
T PRK13651 189 FDEPTAGLDPQGVKE 203 (305)
T ss_pred EeCCCCCCCHHHHHH
Confidence 999999998875443
No 219
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.35 E-value=6e-13 Score=130.27 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=100.5
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++|++|+|++...+.+.....++++|..++|+|+||||||||++.|++.++|. .+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 357889999999866567778888899999999999999999999999999998752 24
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHH---------HHHHHHhccCCcc----ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL---------LSSMEKLRHGQAV----DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l---------~~~l~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 144 (338)
.+++++.+..+.+..++..+.. +. .+.+.+ .+.++.+..|-+. .-..+|.++.+|+..+++
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFG-----EN-ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred EEecCCcccccccHHHHHhccC-----CC-CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 5666666554445555443221 11 122222 2333334333221 123578888888888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++|+|||++++|+...+
T Consensus 469 ll~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHH
Confidence 89999999999999999876433
No 220
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.35 E-value=8.8e-13 Score=114.28 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=89.1
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------E
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------V 77 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------~ 77 (338)
+.|++. .+++++| ++.++.+++|.|+||||||||++.|++.+++. | +
T Consensus 8 ~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 8 KRFGKQTAVNNISL---------------TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred EEECCEEEEeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccE
Confidence 445433 4789999 99999999999999999999999999987642 1 2
Q ss_pred EEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEE
Q 019592 78 VLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 78 ~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
.++.++. ++..++..++..+....+. .+.....+.++.+...... ....+|.++.+++..+++.+.+++++++
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llll 148 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLIL 148 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3444442 2333444444332221111 1223445566655544322 2346888888888778888899999999
Q ss_pred eccccccchHHHh
Q 019592 155 EGILVFHDSRVRE 167 (338)
Q Consensus 155 dg~~~~~d~~~~~ 167 (338)
|+|+.++|+....
T Consensus 149 DEP~~~LD~~~~~ 161 (223)
T TIGR03740 149 DEPTNGLDPIGIQ 161 (223)
T ss_pred CCCccCCCHHHHH
Confidence 9999999876543
No 221
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.35 E-value=7.9e-13 Score=117.67 Aligned_cols=139 Identities=14% Similarity=0.207 Sum_probs=84.3
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE--------------------e
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV--------------------N 81 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l--------------------~ 81 (338)
.++|++++|++...+.+......+++|.+++|.|++|||||||+++|.+.+...|-.++ .
T Consensus 4 ~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 83 (275)
T cd03289 4 TVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIP 83 (275)
T ss_pred EEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEEC
Confidence 34445554443333344444449999999999999999999999999998865443333 3
Q ss_pred CCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc-ccc------------cccCcCCccCCCCccccCC
Q 019592 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-DIP------------NYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 82 ~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~ 148 (338)
++......+..++.. .|. .+..+.+.+.++.+.....+ ..| .+|.++.+++..+++.+.+
T Consensus 84 q~~~lf~~tv~~nl~----~~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 84 QKVFIFSGTFRKNLD----PYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred CCcccchhhHHHHhh----hcc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 332221112222111 011 12223344444443332211 112 2788888888778888899
Q ss_pred CcEEEEeccccccchHHHh
Q 019592 149 SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~ 167 (338)
++++++|+|+..+|+....
T Consensus 157 p~illlDEpts~LD~~~~~ 175 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQ 175 (275)
T ss_pred CCEEEEECccccCCHHHHH
Confidence 9999999999999876443
No 222
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.35 E-value=7.6e-13 Score=109.18 Aligned_cols=112 Identities=8% Similarity=-0.025 Sum_probs=73.9
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHcccc
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEY 100 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~~ 100 (338)
.+++++| ++.++.+++|.|+||||||||++.|++.+++. |-..+... ....+
T Consensus 16 ~l~~i~l---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~ 68 (166)
T cd03223 16 LLKDLSF---------------EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLF 68 (166)
T ss_pred eeecCeE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEE
Confidence 5788888 99999999999999999999999999987752 22222110 00111
Q ss_pred CCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.++.+.-+. ..+.+.+.. . ....+|.++.+++..+++.+.+++++++|+|+.++|+....
T Consensus 69 ~~q~~~~~~-~tv~~nl~~---~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~ 128 (166)
T cd03223 69 LPQRPYLPL-GTLREQLIY---P---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESED 128 (166)
T ss_pred ECCCCcccc-ccHHHHhhc---c---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHH
Confidence 122221110 111122211 0 12468888888888888888999999999999999876443
No 223
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.34 E-value=8.6e-13 Score=117.32 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=89.1
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++++|| ++.+|.+++|+|+||||||||+++|++.+++. |
T Consensus 14 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 14 TLGYGKYTVAENLTV---------------EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred EEEECCEEEeeecce---------------EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHH
Confidence 4555443 4788888 99999999999999999999999999987652 1
Q ss_pred ----EEEEeCCC-CCCCCCHHHHHHccccC----CCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccc
Q 019592 77 ----VVLVNQDS-FYHNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 77 ----~~~l~~D~-~~~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 145 (338)
+.++.++. ++...+..++....... +......+...+.+.++.+..... .....+|.++.+++..+++.
T Consensus 79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH
Confidence 33444442 22334444443322110 000011112234455555444321 23346888888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++++|+|+.++|+....
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~ 180 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQI 180 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHH
Confidence 8999999999999999876544
No 224
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.34 E-value=4.1e-13 Score=112.18 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=79.2
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHcccc
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEY 100 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~~ 100 (338)
.+++++| ++.++.+++|.|+||||||||++.|++.+++. |-..++..+.. .. .........+
T Consensus 17 ~l~~i~~---------------~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~-~~~~~~~i~~ 79 (178)
T cd03247 17 VLKNLSL---------------ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS-DL-EKALSSLISV 79 (178)
T ss_pred ceEEEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH-HH-HHHHHhhEEE
Confidence 5677888 99999999999999999999999999987753 33333322111 00 1112222334
Q ss_pred CCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.++.+.-+.. .+.+.+ ...+|.++.+++..+++.+.+++++++|+|+.++|+...+
T Consensus 80 ~~q~~~~~~~-tv~~~i----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~ 135 (178)
T cd03247 80 LNQRPYLFDT-TLRNNL----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER 135 (178)
T ss_pred EccCCeeecc-cHHHhh----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 4554433321 122222 3468888888888888888999999999999999876443
No 225
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.34 E-value=1.1e-12 Score=127.01 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=92.6
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------- 76 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------------- 76 (338)
+..++|++. .++|+|| ++.+|.+++|+|+||||||||+++|++.+.+. |
T Consensus 9 ~l~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 9 GIDKAFPGVKALSGAAL---------------NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eeEEEeCCeEEeeeeeE---------------EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 345667554 4799999 99999999999999999999999999988652 2
Q ss_pred -------EEEEeCC-CCCCCCCHHHHHHccccCC---CC-cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCC
Q 019592 77 -------VVLVNQD-SFYHNLTEQELARVHEYNF---DH-PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFP 142 (338)
Q Consensus 77 -------~~~l~~D-~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~ 142 (338)
+.++.++ .++..++..++..+....+ .. ........+.+.+..+...... ....+|.++.+++..+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 2344443 2233444455443321111 00 0001123445666666554432 3347899999998888
Q ss_pred ccccCCCcEEEEeccccccchH
Q 019592 143 ARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~ 164 (338)
.+.+.+++++++|||++++|+.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHH
Confidence 8888999999999999999985
No 226
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.1e-12 Score=116.41 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=76.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----C-CCE----------------------EEEeCCCCCCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH-----D-QRV----------------------VLVNQDSFYHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~-----~-~~~----------------------~~l~~D~~~~~l~~~~~~ 95 (338)
++++|.+++|+|+||||||||++.|++.+. + .|- .++.++......+..++.
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl 114 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI 114 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHH
Confidence 999999999999999999999999999874 1 222 233333211112333322
Q ss_pred HccccCCC-CcccccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFD-HPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+....+. .+.......+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|+.++|+....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 193 (260)
T PRK10744 115 AFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTG 193 (260)
T ss_pred hhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHH
Confidence 22111110 000111123344555544321 1123468888888888888888999999999999999876443
No 227
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.34 E-value=9.4e-13 Score=116.53 Aligned_cols=138 Identities=18% Similarity=0.219 Sum_probs=90.2
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 9 ~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 9 WSAGGRLIVDGVDV---------------TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred EEECCEEEEeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHH
Confidence 44543 34788888 99999999999999999999999999987641 1
Q ss_pred ---EEEEeCCC-CCCCCCHHHHHHccccC----CCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcccc
Q 019592 77 ---VVLVNQDS-FYHNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 77 ---~~~l~~D~-~~~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++.++. ++...+..++..+.... +..+...+...+.+.+..+...... ....+|.++.+++..+.+.+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 34444442 23334444443332110 1111111223445566655443322 33468888888888888888
Q ss_pred CCCcEEEEeccccccchHHHhh
Q 019592 147 NPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~~ 168 (338)
.+++++++|+|+.++|+.....
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~ 175 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLE 175 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHH
Confidence 9999999999999998765443
No 228
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.34 E-value=4.3e-13 Score=135.24 Aligned_cols=142 Identities=11% Similarity=0.137 Sum_probs=102.9
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~ 77 (338)
+.+.++||+|+|++ ..+.+.....++++|..++|+|+||||||||++.|++.+.| ..+
T Consensus 472 ~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 45789999999963 35678888889999999999999999999999999999876 246
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHH---------HhccCCccc----cccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVD----IPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---------~l~~~~~~~----~~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-+-+..++..++. .|+ .+.+.+.+.++ .+..|-+.. -..+|.++.+|+..+++
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~----~~~-~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARa 625 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGA----KEN-VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARA 625 (708)
T ss_pred EEEecCceehhHHHHHHHhccC----CCC-CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 7788887765556666655431 121 22333333333 232222211 13578888888888888
Q ss_pred ccCCCcEEEEeccccccchHHH
Q 019592 145 RVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.+++++|+|||++.+|+...
T Consensus 626 ll~~p~iliLDE~Ts~LD~~te 647 (708)
T TIGR01193 626 LLTDSKVLILDESTSNLDTITE 647 (708)
T ss_pred HhhCCCEEEEeCccccCCHHHH
Confidence 8999999999999999877643
No 229
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.34 E-value=8.3e-13 Score=120.64 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=86.0
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------------CE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------------RV 77 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------------~~ 77 (338)
.|+|||| ++.+|.+++|+|+||||||||++.|++.+.+. .+
T Consensus 36 ~l~~vsl---------------~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i 100 (331)
T PRK15079 36 AVDGVTL---------------RLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100 (331)
T ss_pred EEeeEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCce
Confidence 4688888 99999999999999999999999999987652 23
Q ss_pred EEEeCCC---CCCCCCHHHHHHccccCCC--CcccccHHHHHHHHHHhccCCc---cccccccCcCCccCCCCccccCCC
Q 019592 78 VLVNQDS---FYHNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 78 ~~l~~D~---~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.++.++. +...++..++.......+. .+.........+.++.+..... ...-.+|.++.+|+..+.+.+.++
T Consensus 101 ~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P 180 (331)
T PRK15079 101 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEP 180 (331)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 4444442 2223333333221110010 0111112233455555554321 123378999999988888889999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++|+|+|+.++|.....
T Consensus 181 ~llilDEPts~LD~~~~~ 198 (331)
T PRK15079 181 KLIICDEPVSALDVSIQA 198 (331)
T ss_pred CEEEEeCCCccCCHHHHH
Confidence 999999999999876544
No 230
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1e-12 Score=116.38 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=85.1
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeC---
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQ--- 82 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l~~--- 82 (338)
+..+.|++. .|+++|| ++.+|.+++|.|+||||||||++.|++.+.+ .|-..+..
T Consensus 9 ~v~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 9 DLNIYYGSFHAVEDVNL---------------NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred eEEEEECCEeeeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 345566543 4788888 9999999999999999999999999998752 33333322
Q ss_pred -------------------CC-CCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccC----C--ccccccccCcC
Q 019592 83 -------------------DS-FYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHG----Q--AVDIPNYDFKS 135 (338)
Q Consensus 83 -------------------D~-~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~----~--~~~~~~~~~~~ 135 (338)
+. ++..++..++..+....... +.....+.+.+.+..+... . ......+|.++
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 74 YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred cccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 21 11122333322211110000 0000111233344444321 1 12334688888
Q ss_pred CccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 136 YKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 136 ~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++..+++.+.+++++++|+|+.++|+....
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~ 185 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 88888888888999999999999999876443
No 231
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.1e-12 Score=119.83 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=84.3
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------E
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-----------------------V 77 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-----------------------~ 77 (338)
.|+|||| ++.+|.++||+|+||||||||++.|++.+.+. | +
T Consensus 30 ~l~~vsl---------------~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i 94 (327)
T PRK11308 30 ALDGVSF---------------TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKI 94 (327)
T ss_pred EEeeeEE---------------EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCE
Confidence 4788888 99999999999999999999999999987652 2 2
Q ss_pred EEEeCCC---CCCCCCHHHHHHccccCC-CCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCc
Q 019592 78 VLVNQDS---FYHNLTEQELARVHEYNF-DHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 78 ~~l~~D~---~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
.++.+|. +...++..+......... ..........+.+.++.+.... ......+|.++.+|+..+.+.+.+++
T Consensus 95 ~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~ 174 (327)
T PRK11308 95 QIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPD 174 (327)
T ss_pred EEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCC
Confidence 3333332 111122222111000000 0001111234455666655432 12334789999999888888899999
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++|+|+|+..+|.....
T Consensus 175 lLilDEPts~LD~~~~~ 191 (327)
T PRK11308 175 VVVADEPVSALDVSVQA 191 (327)
T ss_pred EEEEECCCccCCHHHHH
Confidence 99999999999876544
No 232
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.34 E-value=8.7e-13 Score=133.66 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=120.4
Q ss_pred CcccccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE--------------
Q 019592 15 GVHFSGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV-------------- 78 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~-------------- 78 (338)
.+..+++.++||+|+||.. ..+...+-..+++.|.-++|+|||||||||+...|.+.++|. |..
T Consensus 982 ~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 982 PNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred ccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHH
Confidence 3445779999999999954 336666677788999999999999999999999999999862 333
Q ss_pred ------EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHH---------HhccCCccc----cccccCcCCccC
Q 019592 79 ------LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVD----IPNYDFKSYKNN 139 (338)
Q Consensus 79 ------~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---------~l~~~~~~~----~~~~~~~~~~~~ 139 (338)
+++|++..-+-+..++..++ ... ...+.+.+.++ .+..|-+.. --.+|+++.||.
T Consensus 1062 LR~~i~lVsQEP~LF~~TIrENI~YG-----~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFNGTIRENIAYG-----SEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRI 1135 (1228)
T ss_pred HHHhcceeccCchhhcccHHHHHhcc-----CCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHH
Confidence 44444433334444444433 122 33333333332 233332221 136889999998
Q ss_pred CCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccC
Q 019592 140 VFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP 219 (338)
Q Consensus 140 ~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~ 219 (338)
..+++.+.+|+++++||.++.+|.+ .|...+-.+.| ...|++-.-+.|+...
T Consensus 1136 AIARAilRnPkILLLDEATSALDse--------------SErvVQeALd~--a~~gRT~IvIAHRLST------------ 1187 (1228)
T KOG0055|consen 1136 AIARAILRNPKILLLDEATSALDSE--------------SERVVQEALDR--AMEGRTTIVIAHRLST------------ 1187 (1228)
T ss_pred HHHHHHHcCCCeeeeeccchhhhhh--------------hHHHHHHHHHH--hhcCCcEEEEecchhh------------
Confidence 8889999999999999999988544 45555555555 3445666666666554
Q ss_pred cCccccEEec
Q 019592 220 TKKYADIIIP 229 (338)
Q Consensus 220 ~~~~aD~iI~ 229 (338)
.++||.|..
T Consensus 1188 -IqnaD~I~V 1196 (1228)
T KOG0055|consen 1188 -IQNADVIAV 1196 (1228)
T ss_pred -hhcCCEEEE
Confidence 588996543
No 233
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=6.9e-13 Score=116.03 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=85.1
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++ ..++++|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 12 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 12 SAHYGKIQALHEVSL---------------HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEeeCCceeeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHH
Confidence 455543 34788888 99999999999999999999999999987641 1
Q ss_pred -----EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhc-cCC--ccccccccCcCCccCCCCccccC
Q 019592 77 -----VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 77 -----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 147 (338)
+.++.++. ++..++..++........ .... ....+.+.+..+. ... ......+|.++.+++..+.+.+.
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-ERDQ-FQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-ChhH-HHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 33334332 222334444333221111 1110 1112223333331 111 11334688888888888888889
Q ss_pred CCcEEEEeccccccchHHHh
Q 019592 148 PSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~ 167 (338)
+++++++|+|+.++|+....
T Consensus 155 ~p~illlDEPt~~LD~~~~~ 174 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQ 174 (237)
T ss_pred CCCEEEEcCccccCCHHHHH
Confidence 99999999999999876544
No 234
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=5.6e-13 Score=110.79 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=78.7
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHcccc
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEY 100 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~~ 100 (338)
.+++++| ++.++.+++|+|+||||||||++.|++.+++. |-..++..+.- ... ........+
T Consensus 15 ~l~~~~~---------------~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~-~~~~~~i~~ 77 (173)
T cd03230 15 ALDDISL---------------TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK-KEP-EEVKRRIGY 77 (173)
T ss_pred eeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc-cch-HhhhccEEE
Confidence 4788888 99999999999999999999999999987653 33333332211 111 122222334
Q ss_pred CCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.++.+.-+....+.+.+. +|.++.+++..+.+.+.+++++++|+|+.++|+..+.
T Consensus 78 ~~q~~~~~~~~tv~~~~~------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 132 (173)
T cd03230 78 LPEEPSLYENLTVRENLK------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132 (173)
T ss_pred EecCCccccCCcHHHHhh------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 455443222112222221 7888888887888888999999999999999876543
No 235
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=5.8e-13 Score=117.96 Aligned_cols=124 Identities=8% Similarity=-0.068 Sum_probs=74.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEE----------------------eCCCCCCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV----------------------NQDSFYHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l----------------------~~D~~~~~l~~~~~~ 95 (338)
++.+|.+++|.|+||||||||++.|++.+.+ .|-..+ .++......+..++.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl 113 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNV 113 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHH
Confidence 9999999999999999999999999998752 232222 222111112222222
Q ss_pred HccccCCCCcccccHHHHHHHHHHhccC----C--ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+....++.+.......+.+.++.+... . ......+|.++.+++..+++.+.+++++++|+|+.++|+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 191 (258)
T PRK14268 114 AYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191 (258)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 2111101100000011233344444321 1 1123468888888888888888999999999999999876543
No 236
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.34 E-value=5.2e-13 Score=132.10 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=101.0
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++|++|+|+++ .+.+.....++++|..++|+|+||||||||++.|.+.+.|. .+
T Consensus 339 ~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 357889999999743 56788888899999999999999999999999999998862 25
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHH---------HhccCCccc----cccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVD----IPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---------~l~~~~~~~----~~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-+-+..++..++. . .+.+.+.+.++ .+..|-+.. -..+|.+..+|+..+++
T Consensus 418 ~~v~Q~~~lF~~Ti~~NI~~~~-~------~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 418 AMVQQDPVVLADTFLANVTLGR-D------ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred EEEccCCccccchHHHHHHhCC-C------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 6677776655555556555432 1 22233333333 332222211 12478888888888888
Q ss_pred ccCCCcEEEEeccccccchHHH
Q 019592 145 RVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.+++++++|||++.+|+...
T Consensus 491 Ll~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHH
Confidence 8899999999999999987643
No 237
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.34 E-value=8.7e-13 Score=130.16 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=101.7
Q ss_pred cccccCccccccCCC-CCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 20 GFHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
.+.++||+|+|++.. .+.+.....+.++|..++|+|+||||||||++.|.+.+.+. .+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 477999999998643 57788888899999999999999999999999999998762 35
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHH---------HHHhccCCccc----cccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQAVD----IPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------l~~l~~~~~~~----~~~~~~~~~~~~~~~~~ 144 (338)
.++++|.+.-+-+..++..++. |. .+.+.+.+. ++.+..|.+.. -..+|.|..+|+..+++
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~~-----~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYGR-----PD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490 (576)
T ss_pred eEEccCCccccccHHHHHhcCC-----CC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence 6677777665556666554422 22 122333333 33333332211 12577888888888888
Q ss_pred ccCCCcEEEEeccccccchHHH
Q 019592 145 RVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.+++++|+|||++.+|+...
T Consensus 491 l~~~~~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 491 ILKDAPILLLDEATSALDAESE 512 (576)
T ss_pred HHhCCCeEEEeCcccccCHHHH
Confidence 8899999999999999987643
No 238
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=7.4e-13 Score=117.38 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=86.3
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCE---------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRV--------- 77 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~--------- 77 (338)
..+.|++. .++++|| ++++|.+++|+|+||||||||++.|++.+.+ .|-
T Consensus 14 ~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 14 DKIFYGNFMAVRDSHV---------------PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEEEeCCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 35566554 4799999 9999999999999999999999999998753 222
Q ss_pred -------------EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc------ccccccCcCCcc
Q 019592 78 -------------VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV------DIPNYDFKSYKN 138 (338)
Q Consensus 78 -------------~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~------~~~~~~~~~~~~ 138 (338)
.++.++......+..++..+........ ......+.+.++.+.....+ ....++.++.++
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 79 GKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred ccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 2233332111233333222211100000 01112334445544332211 123578888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+..+++.+.+++++++|+|+.++|+.....
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~ 187 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRR 187 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 877788889999999999999998765443
No 239
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.33 E-value=1.2e-12 Score=116.33 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=84.4
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------------- 76 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------------- 76 (338)
..++|+|| ++.+|.+++|.|+||||||||+++|++.+++. |
T Consensus 25 ~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 89 (265)
T TIGR02769 25 PVLTNVSL---------------SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRD 89 (265)
T ss_pred EEeeCcee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhc
Confidence 35788888 99999999999999999999999999987652 1
Q ss_pred EEEEeCCC---CCCCCCHHHHHHccccCC-CCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCC
Q 019592 77 VVLVNQDS---FYHNLTEQELARVHEYNF-DHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 77 ~~~l~~D~---~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
+.++.++. ++..++..++........ ..........+.+.++.+.... ......+|.++.+++..+.+.+.++
T Consensus 90 i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p 169 (265)
T TIGR02769 90 VQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKP 169 (265)
T ss_pred eEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 23333332 122233333221110000 0001111234455566655431 1233468888888888888888999
Q ss_pred cEEEEeccccccchHHH
Q 019592 150 DVILLEGILVFHDSRVR 166 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~ 166 (338)
+++++|+|+..+|+...
T Consensus 170 ~illLDEPt~~LD~~~~ 186 (265)
T TIGR02769 170 KLIVLDEAVSNLDMVLQ 186 (265)
T ss_pred CEEEEeCCcccCCHHHH
Confidence 99999999999987643
No 240
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.33 E-value=1.3e-12 Score=113.28 Aligned_cols=131 Identities=10% Similarity=0.137 Sum_probs=80.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC---CCCCCHHHH---
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF---YHNLTEQEL--- 94 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~---~~~l~~~~~--- 94 (338)
.++|+|| ++.+|.+++|+|+||||||||++.|++.+++. |-..++.+.- .........
T Consensus 23 il~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~ 87 (224)
T TIGR02324 23 VLKNVSL---------------TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEV 87 (224)
T ss_pred EEecceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHH
Confidence 4788888 99999999999999999999999999987652 3333331100 000011100
Q ss_pred -HHccccCCCCccc------------------c----cHHHHHHHHHHhccCCc---cccccccCcCCccCCCCccccCC
Q 019592 95 -ARVHEYNFDHPDA------------------F----DTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 95 -~~~~~~~~~~~~~------------------~----~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
.....+.++.+.- . ..+...+.++.+..... .....+|.++.+++..+.+.+.+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~ 167 (224)
T TIGR02324 88 RRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIAD 167 (224)
T ss_pred HhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 0001111211110 0 11233344554443321 23346888888888777788899
Q ss_pred CcEEEEeccccccchHHHh
Q 019592 149 SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~ 167 (338)
++++++|+|+.++|+....
T Consensus 168 p~llllDEPt~~LD~~~~~ 186 (224)
T TIGR02324 168 YPILLLDEPTASLDAANRQ 186 (224)
T ss_pred CCEEEEcCCcccCCHHHHH
Confidence 9999999999999876543
No 241
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.33 E-value=4.3e-13 Score=135.86 Aligned_cols=169 Identities=16% Similarity=0.175 Sum_probs=113.8
Q ss_pred ccccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------
Q 019592 17 HFSGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------ 76 (338)
Q Consensus 17 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~------------------ 76 (338)
..+.+.++||.|+||.. ..+-..+-...++.|..++|.|+|||||||+.+.|++.+.|. |
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence 44778899999999966 457777777889999999999999999999999999999872 2
Q ss_pred --EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHH---------HHHHhccCCcc----ccccccCcCCccCCC
Q 019592 77 --VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHGQAV----DIPNYDFKSYKNNVF 141 (338)
Q Consensus 77 --~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---------~l~~l~~~~~~----~~~~~~~~~~~~~~~ 141 (338)
+.+++|++..-..+..++.. |+.|++- .+.+.+ .+..+..+-+. .-+.+|.++.+|...
T Consensus 427 ~~iglV~QePvlF~~tI~eNI~-----~G~~dat-~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 427 SQIGLVSQEPVLFATTIRENIR-----YGKPDAT-REEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAI 500 (1228)
T ss_pred hhcCeeeechhhhcccHHHHHh-----cCCCccc-HHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHH
Confidence 34444444443444444433 3334321 122222 22233332211 224599999999988
Q ss_pred CccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (338)
+++.+.+|+++++||+++.+|+... ...+-.+.+ ...|++...+.|+...
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se--------------~~Vq~ALd~--~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESE--------------RVVQEALDK--ASKGRTTIVVAHRLST 550 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHH--------------HHHHHHHHH--hhcCCeEEEEeeehhh
Confidence 8999999999999999999976543 333344433 3456666666666555
No 242
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.33 E-value=1.1e-12 Score=112.42 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=85.9
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC----------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------- 82 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~---------- 82 (338)
.+.|++. .++++|| ++++|.+++|+|+||||||||++.|++.+.+. |-..++.
T Consensus 9 ~~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 9 ACVRGGRVLFSGLSF---------------TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEECCeEEEeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHh
Confidence 4556443 4799999 99999999999999999999999999987642 2222222
Q ss_pred -------C-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEE
Q 019592 83 -------D-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 83 -------D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
+ .++...+..++..+...... .....+.+.++.+..... .....+|.++.+++..+.+.+.+++++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 149 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIW 149 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 1 11122333332221110010 111234455555544322 122368888888888788888999999
Q ss_pred EEeccccccchHHHh
Q 019592 153 LLEGILVFHDSRVRE 167 (338)
Q Consensus 153 Ildg~~~~~d~~~~~ 167 (338)
++|+|+.++|+....
T Consensus 150 llDEPt~~LD~~~~~ 164 (207)
T PRK13539 150 ILDEPTAALDAAAVA 164 (207)
T ss_pred EEeCCcccCCHHHHH
Confidence 999999999876443
No 243
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.33 E-value=1.2e-12 Score=115.20 Aligned_cols=131 Identities=15% Similarity=0.264 Sum_probs=88.7
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCC
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQD 83 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~D 83 (338)
.+.|++ ..++++|| ++++|.+++|.|+||||||||++.|++.+.+. .+.++.++
T Consensus 11 ~~~~~~~~vl~~vs~---------------~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~ 75 (251)
T PRK09544 11 SVSFGQRRVLSDVSL---------------ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQK 75 (251)
T ss_pred EEEECCceEEEeEEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccc
Confidence 445543 34688888 99999999999999999999999999987652 35666666
Q ss_pred CCC-CCC--CHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccc
Q 019592 84 SFY-HNL--TEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (338)
Q Consensus 84 ~~~-~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~ 158 (338)
... ..+ +..+... +. + ....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+
T Consensus 76 ~~~~~~l~~~~~~~~~-----~~-~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 148 (251)
T PRK09544 76 LYLDTTLPLTVNRFLR-----LR-P-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT 148 (251)
T ss_pred cccccccChhHHHHHh-----cc-c-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 432 222 1111111 10 1 12234455666665544322 33468888888888788888999999999999
Q ss_pred cccchHHHh
Q 019592 159 VFHDSRVRE 167 (338)
Q Consensus 159 ~~~d~~~~~ 167 (338)
.++|+....
T Consensus 149 ~~LD~~~~~ 157 (251)
T PRK09544 149 QGVDVNGQV 157 (251)
T ss_pred cCCCHHHHH
Confidence 999876543
No 244
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.1e-12 Score=115.07 Aligned_cols=138 Identities=11% Similarity=0.045 Sum_probs=85.0
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEE-------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVL------------- 79 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~------------- 79 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+.+. |-..
T Consensus 9 ~~~~~~~~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 9 NCFYGAHQALFDITL---------------DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEECCeeeEeeeee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccc
Confidence 345544 34788888 99999999999999999999999999987642 2222
Q ss_pred -------------EeCCC-CCCCCCHHHHHHcccc-CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCC
Q 019592 80 -------------VNQDS-FYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFP 142 (338)
Q Consensus 80 -------------l~~D~-~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~ 142 (338)
+.++. ++..++..++...... .++.+.......+.+.+..+...... ....+|.++.+++..+
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 22221 1122233322211000 01100001112334445555443322 2346888888888878
Q ss_pred ccccCCCcEEEEeccccccchHHHh
Q 019592 143 ARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++.+.+++++|+|+|+.++|+....
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~ 178 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITA 178 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHH
Confidence 8888999999999999999876543
No 245
>PLN03130 ABC transporter C family member; Provisional
Probab=99.33 E-value=4.4e-13 Score=144.38 Aligned_cols=139 Identities=12% Similarity=0.192 Sum_probs=102.9
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~ 77 (338)
+.+.++||+|+|.++.++.+.....++++|..|||+|++||||||+++.|.+.+.+ ..+
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 46889999999987777889999999999999999999999999999999998876 246
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHH---------hccCCcccc----ccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------l~~~~~~~~----~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-.-+..++...+. ....+.+.+.++. +..|-+..+ ..+|.|+.+++..+++
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARA 1388 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARA 1388 (1622)
T ss_pred EEECCCCccccccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHH
Confidence 7778887665555565554321 1223334444433 222222111 2577788888888888
Q ss_pred ccCCCcEEEEeccccccchH
Q 019592 145 RVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~ 164 (338)
.+.+++++|+||+++.+|..
T Consensus 1389 LLr~p~ILILDEATSaLD~~ 1408 (1622)
T PLN03130 1389 LLRRSKILVLDEATAAVDVR 1408 (1622)
T ss_pred HHcCCCEEEEECCCCCCCHH
Confidence 89999999999999998765
No 246
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.33 E-value=1.1e-12 Score=116.73 Aligned_cols=131 Identities=11% Similarity=0.106 Sum_probs=81.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE--------------------EE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV--------------------LV 80 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~--------------------~l 80 (338)
.++|+|| +++++.+++|+|+||||||||++.|++.+.+. |-. ++
T Consensus 28 ~l~~vsl---------------~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 92 (267)
T PRK15112 28 AVKPLSF---------------TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMI 92 (267)
T ss_pred eeeeeeE---------------EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEE
Confidence 4677777 99999999999999999999999999998752 222 22
Q ss_pred eCCC---CCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccC-C--ccccccccCcCCccCCCCccccCCCcEEE
Q 019592 81 NQDS---FYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 81 ~~D~---~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
.++. ++..++..+........... ......+.+.+.++.+... . ......+|.++.+++..+.+.+.+++++|
T Consensus 93 ~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (267)
T PRK15112 93 FQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVII 172 (267)
T ss_pred ecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEE
Confidence 2321 11111111111110000000 0001112344556655542 1 11234688888888888888889999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|+.++|+..+.
T Consensus 173 LDEPt~~LD~~~~~ 186 (267)
T PRK15112 173 ADEALASLDMSMRS 186 (267)
T ss_pred EcCCcccCCHHHHH
Confidence 99999999876543
No 247
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.33 E-value=7.6e-13 Score=115.77 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=79.8
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEE
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVL 79 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~ 79 (338)
..++++|| ++.+|.+++|+|+||||||||++.|++.+++. | +.+
T Consensus 16 ~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 16 VILDNISL---------------RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred cceeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 35688888 99999999999999999999999999987642 2 334
Q ss_pred EeCCCCCCCCCHHHHHHccccCCCCcccccHHHHH---------HHHHHhccC--C--ccccccccCcCCccCCCCcccc
Q 019592 80 VNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL---------SSMEKLRHG--Q--AVDIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 80 l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~---------~~l~~l~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++..+...+..++..+... . .....+. +.+..+..+ . ......+|.++.+++..+++.+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~-----~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADP-----G-MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCCchhccchHHHHhhccCC-----C-CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 444432222333333222111 0 1111111 112222111 0 1123468888888887888888
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|+|+.++|+....
T Consensus 155 ~~p~llllDEP~~~LD~~~~~ 175 (237)
T cd03252 155 HNPRILIFDEATSALDYESEH 175 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHH
Confidence 999999999999999876543
No 248
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.7e-12 Score=115.55 Aligned_cols=123 Identities=13% Similarity=-0.084 Sum_probs=74.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCE----------------------EEEeCCCCCCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRV----------------------VLVNQDSFYHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~----------------------~~l~~D~~~~~l~~~~~~ 95 (338)
++.+|.+++|+|+||||||||++.|++.+++ .|- .++.++......+..++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 114 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENI 114 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHH
Confidence 9999999999999999999999999998641 222 222332211111222222
Q ss_pred HccccCCCCcccccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+......... ...+...+.++.+.... ......+|.++.+++..+++.+.+++++++|+|+.++|+....
T Consensus 115 ~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~ 191 (269)
T PRK14259 115 AFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 (269)
T ss_pred hhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 22111000000 01122233444443211 1123468888888888888888999999999999999876443
No 249
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.32 E-value=1.2e-12 Score=115.86 Aligned_cols=138 Identities=13% Similarity=0.096 Sum_probs=86.1
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV------------ 80 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l------------ 80 (338)
.+.|++. .++|++| ++++|.+++|+|+||||||||++.|++.+++. |-..+
T Consensus 12 ~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 12 HKRYGEHEVLKGVSL---------------QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred EEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccc
Confidence 4455443 3688888 99999999999999999999999999987652 22222
Q ss_pred ---------------------eCCC-CCCCCCHHHHHHccccC-CCCcccccHHHHHHHHHHhccCCc---cccccccCc
Q 019592 81 ---------------------NQDS-FYHNLTEQELARVHEYN-FDHPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFK 134 (338)
Q Consensus 81 ---------------------~~D~-~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~ 134 (338)
.++. ++..++..++..+.... +..........+.+.++.+..... .....+|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 2221 11122333322211100 010011112234455666554332 123468888
Q ss_pred CCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 135 SYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 135 ~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++..+.+.+.+++++++|+|+.++|+....
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 189 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 888888888888999999999999999876543
No 250
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1e-12 Score=117.43 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=84.2
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------------EE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------------VV 78 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------------~~ 78 (338)
.++++|| ++.+|.+++|.|+||||||||+++|++.+++. | +.
T Consensus 17 ~l~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 17 ALKGINF---------------KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred eeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 5788888 99999999999999999999999999987652 2 23
Q ss_pred EEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEE
Q 019592 79 LVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 79 ~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
++.++. .+...+..++..+....+..........+.+.++.+..... .....+|.++.+++..+.+.+.+++++++
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 161 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 344442 11122333332221111110011111234455555544322 23346888888888778888899999999
Q ss_pred eccccccchHHHhh
Q 019592 155 EGILVFHDSRVREL 168 (338)
Q Consensus 155 dg~~~~~d~~~~~~ 168 (338)
|+|+.++|+.....
T Consensus 162 DEPt~gLD~~~~~~ 175 (275)
T PRK13639 162 DEPTSGLDPMGASQ 175 (275)
T ss_pred eCCCcCCCHHHHHH
Confidence 99999998765443
No 251
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.32 E-value=1.3e-12 Score=110.69 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=74.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC-----------------CCCCCCHHHHHHccccCCCCc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-----------------FYHNLTEQELARVHEYNFDHP 105 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~-----------------~~~~l~~~~~~~~~~~~~~~~ 105 (338)
+++++.+++|.|+||||||||+++|++.+.+. |-..++..+ ++...+..++..+....+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-- 99 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN-- 99 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc--
Confidence 99999999999999999999999999987652 222222211 1112222222221111110
Q ss_pred ccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 106 DAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 106 ~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..+...+.+..+...... ....+|.++.+++..+++.+.+++++++|+|+.++|+....
T Consensus 100 ---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~ 160 (195)
T PRK13541 100 ---SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD 160 (195)
T ss_pred ---cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 112233444444333222 33468888888877777888999999999999999876443
No 252
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.9e-12 Score=113.94 Aligned_cols=138 Identities=9% Similarity=0.012 Sum_probs=87.7
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---C-CC-------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---D-QR------------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~---~-~~------------- 76 (338)
.+.|++ ..++|+|| ++.++.+++|+|+||||||||++.|++.+. + .|
T Consensus 9 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 9 NLFYGKKQALFDINM---------------QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred EEEECCEeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 455654 34788888 999999999999999999999999999863 1 12
Q ss_pred -------EEEEeCCCCCCCCCHHHHHHccccCCC--CcccccHHHHHHHHHHhccCC------ccccccccCcCCccCCC
Q 019592 77 -------VVLVNQDSFYHNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVF 141 (338)
Q Consensus 77 -------~~~l~~D~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~ 141 (338)
+.++.++......+..++..+...... .+.......+.+.++.+.... ......+|.++.+++..
T Consensus 74 ~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred HHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 344555432222344443322111000 011111223445556555431 11234678888888887
Q ss_pred CccccCCCcEEEEeccccccchHHHh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+++.+.+++++++|+|+.++|+..+.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~ 179 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSG 179 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 88888999999999999999876443
No 253
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.32 E-value=1.4e-12 Score=128.34 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=99.1
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEE
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVV 78 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~ 78 (338)
.+.+++++|+|+....+.+.....++++|..++|+|+||||||||++.|++.++|. .+.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 47789999999876667788888899999999999999999999999999998762 245
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHH---------hccCCcc----ccccccCcCCccCCCCccc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAV----DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------l~~~~~~----~~~~~~~~~~~~~~~~~~~ 145 (338)
++.++.+.-..+..++..++. |+ ...+.+.+.++. +..|-+. .-..+|.++.+|+..+++.
T Consensus 393 ~v~q~~~lf~~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 393 VVSQTPFLFSDTVANNIALGR-----PD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred EEccCCeeccccHHHHHhcCC-----CC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 556665544445555444322 21 222233333322 2222111 1125788888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++++|+|++.+|+...+
T Consensus 467 l~~~~illlDEpts~LD~~~~~ 488 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEH 488 (569)
T ss_pred hcCCCEEEEECccccCCHHHHH
Confidence 9999999999999999876543
No 254
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.32 E-value=2.1e-12 Score=110.54 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEEEEeCCCCCCCCCHHHHHHccccCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVNQDSFYHNLTEQELARVHEYNF 102 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~~l~~D~~~~~l~~~~~~~~~~~~~ 102 (338)
.++++.+++|.|+||||||||++.|++.+.+. ++.++.++..+...+..++... +
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~----~ 105 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP----F 105 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcc----c
Confidence 99999999999999999999999999987641 2344444432222233332211 1
Q ss_pred CCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 103 DHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 103 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
. .+....+.+.+. . ......+|.++.+++..+++.+.+++++++|+|+.++|+...+
T Consensus 106 ~---~~~~~~~~~~l~---~--~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 162 (207)
T cd03369 106 D---EYSDEEIYGALR---V--SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162 (207)
T ss_pred C---CCCHHHHHHHhh---c--cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 1 112222333333 1 1233467888888887778888999999999999999876443
No 255
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1e-12 Score=118.33 Aligned_cols=125 Identities=12% Similarity=0.009 Sum_probs=75.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE-------------------------eCCCC--CCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV-------------------------NQDSF--YHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l-------------------------~~D~~--~~~l~~~~~~ 95 (338)
++.+|.+++|+|+||||||||+++|++.+.+. |-..+ .++.. ....+..++.
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 112 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDI 112 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHH
Confidence 99999999999999999999999999987652 22222 22210 0011222221
Q ss_pred HccccCCCCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
.+...............+.+.+..+.... ......+|.++.+++..+++.+.+++++|+|+|+.++|+.....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 113 AFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 11111000000001122334454444321 12334688888888888888889999999999999998865443
No 256
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.1e-12 Score=117.98 Aligned_cols=125 Identities=14% Similarity=0.006 Sum_probs=77.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE------------------------EEEeCCC--CCCCCCHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV------------------------VLVNQDS--FYHNLTEQELAR 96 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~------------------------~~l~~D~--~~~~l~~~~~~~ 96 (338)
++++|.+++|.|+||||||||++.|++.+.+. |- .++.++. .+...+..++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~ 108 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREII 108 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHH
Confidence 99999999999999999999999999987752 22 2333321 010112222222
Q ss_pred ccccCCCCcccccHHHHHHHHHHhccCCc---cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 97 VHEYNFDHPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
++......+.........+.+..+..... .....+|.++.+++..+.+.+.+++++|+|+|+.++|+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~ 183 (286)
T PRK13646 109 FGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQ 183 (286)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 11111110111112233455555554311 2334688888888888888889999999999999998865543
No 257
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.32 E-value=1.2e-12 Score=109.70 Aligned_cols=123 Identities=9% Similarity=0.060 Sum_probs=81.0
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCC-HHHHHHccc
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLT-EQELARVHE 99 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~-~~~~~~~~~ 99 (338)
.+++++| +++++.+++|.|+||||||||++.|++.+++. |-..++..+.. ... .........
T Consensus 15 ~l~~vs~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~i~ 78 (182)
T cd03215 15 AVRDVSF---------------EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT-RRSPRDAIRAGIA 78 (182)
T ss_pred eecceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC-ccCHHHHHhCCeE
Confidence 6789999 99999999999999999999999999988753 33444432221 111 111122233
Q ss_pred cCCCCcc---cccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 100 YNFDHPD---AFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 100 ~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+.++.+. .+......+.+.... .+|.++.+++..+.+.+.+++++++|+|+.++|+..+..
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~--------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~ 142 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSS--------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE 142 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHh--------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHH
Confidence 4444431 111112222222111 188888888888888889999999999999998765443
No 258
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.3e-12 Score=114.70 Aligned_cols=144 Identities=12% Similarity=-0.028 Sum_probs=83.1
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEE---------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV--------------- 80 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l--------------- 80 (338)
.++||+++|.+ .+.+.....++++|.+++|.|+||||||||++.|++.+++ .|-..+
T Consensus 21 ~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~ 98 (267)
T PRK14235 21 RARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL 98 (267)
T ss_pred EEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHH
Confidence 34455554432 1233333348999999999999999999999999998753 232222
Q ss_pred -------eCCCCCCCCCHHHHHHccccCCCC--cccccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccc
Q 019592 81 -------NQDSFYHNLTEQELARVHEYNFDH--PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 81 -------~~D~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~ 145 (338)
.++......+..++..+.....+. +..-....+.+.+..+.... ......+|.++.+++..+++.
T Consensus 99 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 99 RARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 222111111222222211100000 00001122334444444321 112346888888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++|+|+|+.++|+....
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~ 200 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATA 200 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHH
Confidence 8999999999999999876443
No 259
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.2e-12 Score=113.94 Aligned_cols=125 Identities=15% Similarity=0.226 Sum_probs=76.6
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE--------------------EE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV--------------------LV 80 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~--------------------~l 80 (338)
.++|+|| +++.|.+++|.|+||||||||++.|++.+++. |-. ++
T Consensus 18 ~l~~isl---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 18 VLKDINF---------------SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred cccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 5677777 99999999999999999999999999988652 222 22
Q ss_pred eCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhcc---------CC--c--cccccccCcCCccCCCCccccC
Q 019592 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQ--A--VDIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 81 ~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~---------~~--~--~~~~~~~~~~~~~~~~~~~~~~ 147 (338)
.++..+...+..++..+.. +. .....+.+.+..... +- . .....+|.++.+++..+.+.+.
T Consensus 83 ~q~~~~~~~tv~~~~~~~~-----~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 83 LQDTFLFSGTIMENIRLGR-----PN-ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred cCCchhhhhHHHHHHhccC-----CC-CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 2222111111111111110 00 111122222211110 10 0 1224688888888888888889
Q ss_pred CCcEEEEeccccccchHHHh
Q 019592 148 PSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~ 167 (338)
+++++++|+|+.++|+..++
T Consensus 157 ~p~llllDEP~~~LD~~~~~ 176 (229)
T cd03254 157 DPKILILDEATSNIDTETEK 176 (229)
T ss_pred CCCEEEEeCccccCCHHHHH
Confidence 99999999999999876543
No 260
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.8e-12 Score=118.04 Aligned_cols=148 Identities=10% Similarity=0.066 Sum_probs=90.0
Q ss_pred ccccCccccccCCC---CCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC--------
Q 019592 21 FHMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN-------- 88 (338)
Q Consensus 21 ~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~-------- 88 (338)
+.++|++++|++.. .+.+.....++++|.+++|+|+||||||||++.|++.+.+. |-..+..-+....
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 101 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELIT 101 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccc
Confidence 45677777776432 24566666699999999999999999999999999988752 3233321111000
Q ss_pred -------CCHHHHHHccccCCCCc-----------------------ccccHHHHHHHHHHhccCCc-c--ccccccCcC
Q 019592 89 -------LTEQELARVHEYNFDHP-----------------------DAFDTEKLLSSMEKLRHGQA-V--DIPNYDFKS 135 (338)
Q Consensus 89 -------l~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~l~~l~~~~~-~--~~~~~~~~~ 135 (338)
...........+.|+.| .........+.+..+..... . ....+|.++
T Consensus 102 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq 181 (320)
T PRK13631 102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQ 181 (320)
T ss_pred cccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHH
Confidence 00011111111122221 11111223344555544311 1 234688888
Q ss_pred CccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 136 YKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 136 ~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
.+++..+.+.+.+++++|+|+|+.++|+.....
T Consensus 182 kqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~ 214 (320)
T PRK13631 182 KRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHH
Confidence 888888888889999999999999998865443
No 261
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.32 E-value=9.3e-13 Score=121.31 Aligned_cols=136 Identities=11% Similarity=0.111 Sum_probs=98.5
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
..+|.|++++ .++||| ++.++.|.+|.|.||||||||+++|.+.+.|
T Consensus 9 ~itK~f~~~~And~V~l---------------~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 9 GITKRFPGVVANDDVSL---------------SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred ccEEEcCCEEecCceee---------------eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCH
Confidence 4578898888 699999 9999999999999999999999999999987
Q ss_pred -----CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHH----HHHhccCCc--cccccccCcCCccCCCC
Q 019592 75 -----QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS----MEKLRHGQA--VDIPNYDFKSYKNNVFP 142 (338)
Q Consensus 75 -----~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~l~~~~~--~~~~~~~~~~~~~~~~~ 142 (338)
.++..++|. .++..++..++..++...- .....+.....+. .+++...-+ ..+..++-+..+++..-
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~-~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccc-cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 356667775 3456777777766654321 1123444444444 444443322 24446777777887666
Q ss_pred ccccCCCcEEEEeccccccchH
Q 019592 143 ARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~ 164 (338)
..+..+++++|+|+|++.+-|.
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~ 174 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQ 174 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHH
Confidence 6778899999999999977654
No 262
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.8e-12 Score=114.55 Aligned_cols=138 Identities=13% Similarity=0.028 Sum_probs=83.8
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeC-----
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQ----- 82 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l~~----- 82 (338)
.+.|++. .++|+|| ++.+|.+++|+|+||||||||++.|++.+++ .|-..++.
T Consensus 11 ~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 11 RVYYGSNHVIKGVDL---------------KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred EEEeCCeeeeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 4556443 4788888 9999999999999999999999999998764 23333322
Q ss_pred -----------------CC-CCCCCCHHHHHHccccCCC--CcccccHHHHHHHHHHhccCC------ccccccccCcCC
Q 019592 83 -----------------DS-FYHNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSY 136 (338)
Q Consensus 83 -----------------D~-~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~ 136 (338)
+. ++..++..++..+...... .+.......+.+.++.+.... ......+|.++.
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 21 1112233332221110000 000001112333444433211 112346888888
Q ss_pred ccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 137 KNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 137 ~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+++..+.+.+.+++++++|+|+.++|+....
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~ 186 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTA 186 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 8887778888999999999999999876443
No 263
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.31 E-value=1.8e-12 Score=125.82 Aligned_cols=132 Identities=15% Similarity=0.190 Sum_probs=88.2
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
..+.|++. .|+++|| ++++|.+++|+|+||||||||+++|++.+.+. |
T Consensus 17 l~~~~~~~~il~~vsl---------------~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 17 ISKQYSGVEVLKGIDF---------------TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA 81 (510)
T ss_pred EEEEeCCceeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 34555443 3677888 99999999999999999999999999988652 2
Q ss_pred ------EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccC
Q 019592 77 ------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 77 ------~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (338)
+.++.++. ++..++..++..+... . .....+.+.+.+..+...... ....+|.++.+++..+++.+.
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLP---K-RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccc---c-chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 22333332 2223333333222110 0 011123445566666554322 334789999999888888889
Q ss_pred CCcEEEEeccccccchH
Q 019592 148 PSDVILLEGILVFHDSR 164 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~ 164 (338)
+++++++|||++++|+.
T Consensus 158 ~p~lllLDEPt~~LD~~ 174 (510)
T PRK15439 158 DSRILILDEPTASLTPA 174 (510)
T ss_pred CCCEEEEECCCCCCCHH
Confidence 99999999999999985
No 264
>PLN03232 ABC transporter C family member; Provisional
Probab=99.31 E-value=5.1e-13 Score=143.55 Aligned_cols=166 Identities=13% Similarity=0.233 Sum_probs=114.7
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~ 77 (338)
+.+.++||+|+|.++.++.+.....++++|..|||+|++||||||+++.|.+.+.+ ..+
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 45889999999987777889999999999999999999999999999999998876 245
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhc---------cCCcccc----ccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~---------~~~~~~~----~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-+-+..++...+. .++.+.+.+.++... .|-+..+ ..+|.|+.|++..+++
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 7777777665555555544321 123333444443322 2211111 2577888888888888
Q ss_pred ccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (338)
.+.+++++|+||+++.+|... +..+++.+++. ..+++...+.|....
T Consensus 1386 LLr~~~ILILDEATSaLD~~T--------------e~~Iq~~L~~~--~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232 1386 LLRRSKILVLDEATASVDVRT--------------DSLIQRTIREE--FKSCTMLVIAHRLNT 1432 (1495)
T ss_pred HHhCCCEEEEECCcccCCHHH--------------HHHHHHHHHHH--cCCCEEEEEeCCHHH
Confidence 899999999999999987653 33344444432 234566666665433
No 265
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.31 E-value=2.3e-12 Score=113.02 Aligned_cols=134 Identities=19% Similarity=0.136 Sum_probs=87.9
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CEEEEeCCCC
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSF 85 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------~~~~l~~D~~ 85 (338)
.+.+++|.|+..++ ++.++.+++|+|+||||||||+++|++.+.+. .+.++.++..
T Consensus 7 ~~~~~~~~l~~~~~---------------~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~ 71 (246)
T cd03237 7 KKTLGEFTLEVEGG---------------SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK 71 (246)
T ss_pred ccccCcEEEEEecC---------------CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEeccccc
Confidence 34556666655555 67889999999999999999999999987652 2445555532
Q ss_pred -CCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccc
Q 019592 86 -YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (338)
Q Consensus 86 -~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d 162 (338)
+...+..++.......+.. ......+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|
T Consensus 72 ~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 72 ADYEGTVRDLLSSITKDFYT----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred CCCCCCHHHHHHHHhhhccc----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 2344555543221111110 011223445444433222 334689999999888888889999999999999998
Q ss_pred hHHHh
Q 019592 163 SRVRE 167 (338)
Q Consensus 163 ~~~~~ 167 (338)
+..+.
T Consensus 148 ~~~~~ 152 (246)
T cd03237 148 VEQRL 152 (246)
T ss_pred HHHHH
Confidence 76544
No 266
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.31 E-value=2.5e-12 Score=110.29 Aligned_cols=188 Identities=18% Similarity=0.284 Sum_probs=99.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------------HH---HccccCCCCcc-----c
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------------LA---RVHEYNFDHPD-----A 107 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~------------~~---~~~~~~~~~~~-----~ 107 (338)
+.+|+|.||+||||||+++.|++.++ +.+++.+.+|+.....- .. ......|.... .
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~---~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEE
Confidence 46899999999999999999999886 67778887764332110 00 00011110000 0
Q ss_pred ccHHHHHHHHHHhccCC----ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHH
Q 019592 108 FDTEKLLSSMEKLRHGQ----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRL 183 (338)
Q Consensus 108 ~~~~~l~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~ 183 (338)
++...+...+..-..+. ....|.....+... ...+....-+|+||-..+. . +.+..+++||+++|.+.+.
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~----qr~~a~~~~~Vi~Gr~~~~-~-v~~~a~~~ifl~a~~~~Ra 152 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKR----QQALAKNDGIIADGRDIGT-V-VFPNAEVKIFLDASVEERA 152 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHH----HHHHhhcCCEEEEEcCcce-E-EeCCCCEEEEEECCHHHHH
Confidence 11111111110000000 00112111111111 1111223358999987552 1 3344789999999999999
Q ss_pred HHHHhhCccc-cCCCHHHHHHHHhhcCcchhhhhccCcCccccE-EecCCCCcHHHHHHHHHHHHH
Q 019592 184 ARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYADI-IIPRGGDNHVAIDLIVQHIRT 247 (338)
Q Consensus 184 ~R~~~R~~~~-~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~-iI~~~~~~~~~~~~~~~~i~~ 247 (338)
+|+..|.... .+.+.+.....+..+.......+..|.....|. +|+++. ..++++++.|.+
T Consensus 153 ~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~---l~ieevv~~I~~ 215 (217)
T TIGR00017 153 KRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSN---LSIDEVVEKILE 215 (217)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCC---CCHHHHHHHHHH
Confidence 9999886432 133456666666665333334444665555554 454443 356667766654
No 267
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.9e-12 Score=114.51 Aligned_cols=124 Identities=12% Similarity=-0.026 Sum_probs=75.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEE----------------------EeCCCCCCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVL----------------------VNQDSFYHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~----------------------l~~D~~~~~l~~~~~~ 95 (338)
++.+|.+++|.|+||||||||+++|++.+.+ .|-.. +.++......+..++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni 108 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNI 108 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHH
Confidence 9999999999999999999999999998864 23222 2232111123333332
Q ss_pred HccccCCCCccc-ccHHHHHHHHHHhccC------CccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFDHPDA-FDTEKLLSSMEKLRHG------QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~~~~~-~~~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.......... .....+.+.++.+... .......+|.++.+++..+++.+.+++++|+|+|+.++|+....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 187 (254)
T PRK14273 109 SYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTG 187 (254)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 221111100000 0012233334433221 11233468888888888888888999999999999999876443
No 268
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.4e-12 Score=116.41 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=86.1
Q ss_pred Ccccc-c-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 15 GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 15 ~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
.+.|+ + ..++|+|| ++.+|.+++|.|+||||||||++.|++.+++. |
T Consensus 13 ~~~~~~~~~il~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 13 TVTWRNGHTALRDASF---------------TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK 77 (272)
T ss_pred EEEecCCcEEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhcc
Confidence 45553 2 34688888 99999999999999999999999999987652 1
Q ss_pred --EEEEeCCCCC---CCCCHHHHHHcccc----CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 77 --VVLVNQDSFY---HNLTEQELARVHEY----NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 77 --~~~l~~D~~~---~~l~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
+.++.++... ......++..+..+ .+..+...+.....+.++.+...... ....+|.++.+++..+.+.
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 3344443211 01111221111100 00111111223344555555443222 3346888888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++++|+|+.++|+....
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~ 179 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEA 179 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHH
Confidence 8999999999999999876544
No 269
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.4e-12 Score=113.62 Aligned_cols=138 Identities=9% Similarity=-0.037 Sum_probs=83.6
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCE----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRV---------- 77 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~---------- 77 (338)
.+.|++ ..++++|| ++++|.+++|+|+||||||||++.|++.+.+ .|-
T Consensus 11 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 11 NLWYGEKQALNDINL---------------PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred EEEECCeeeeeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 345543 34788888 9999999999999999999999999998642 232
Q ss_pred ------------EEEeCCCCCCCCCHHHHHHccccCCCCc-ccccHHHHHHHHHHhccC------CccccccccCcCCcc
Q 019592 78 ------------VLVNQDSFYHNLTEQELARVHEYNFDHP-DAFDTEKLLSSMEKLRHG------QAVDIPNYDFKSYKN 138 (338)
Q Consensus 78 ------------~~l~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 138 (338)
.++.++......+..++..+....+... .........+.++.+... .......+|.++.++
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 2333332211233333322211111100 001112223344444321 112334688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+.+.+.+++++++|+|+.++|+..+.
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~ 184 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTL 184 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 87777788999999999999999876544
No 270
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.31 E-value=1.6e-12 Score=114.74 Aligned_cols=136 Identities=12% Similarity=0.098 Sum_probs=83.3
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE-------------
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV------------- 80 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l------------- 80 (338)
+.|++ ..++|+|| ++.+|.+++|+|+||||||||++.|++.+.+. |-..+
T Consensus 8 ~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 8 KRFGILTVLDGLNF---------------SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred EEeCCeeEEeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccc
Confidence 44543 34788888 99999999999999999999999999987652 22222
Q ss_pred --------------------eCC-CCCCCCCHHHHHHcccc-CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCC
Q 019592 81 --------------------NQD-SFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSY 136 (338)
Q Consensus 81 --------------------~~D-~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~ 136 (338)
.++ .++...+..++..+... ............+.+.+..+...... ....+|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQ 152 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence 222 11122233222221100 00000001112234455554433222 2236888888
Q ss_pred ccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 137 KNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 137 ~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+++..+.+.+.+++++++|+|+.++|+...
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~ 182 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELV 182 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 888778888899999999999999987644
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=99.31 E-value=3.4e-11 Score=99.27 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=67.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 128 (338)
..|.|+|++||||||+|+.|++.++ +.+++.|..+... . +. ....+.+.+.+..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l~~~~---------~--w~---~~~~~~~~~~~~~~~------- 57 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN---IPVHHLDALFWKP---------N--WE---GVPKEEQITVQNELV------- 57 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCceecchhhccc---------C--Cc---CCCHHHHHHHHHHHh-------
Confidence 4689999999999999999999876 6777777655211 0 11 011112222222211
Q ss_pred ccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCc
Q 019592 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 191 (338)
.. +-.|+||.+...-......+|.+|||++|.++++.|+++|..
T Consensus 58 ------------------~~-~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 58 ------------------KE-DEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred ------------------cC-CCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 11 237889977643344456799999999999999999999853
No 272
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.31 E-value=9.5e-12 Score=99.36 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=88.6
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------CE
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------------RV 77 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------------~~ 77 (338)
|++|++ .++.+.-++|+|+||||||||+-.|+++-.+. ++
T Consensus 26 L~~V~L---------------~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~v 90 (228)
T COG4181 26 LKGVEL---------------VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHV 90 (228)
T ss_pred eecceE---------------EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccce
Confidence 688888 99999999999999999999999999976652 22
Q ss_pred EEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc-ccc-cccCcCCccCCCCccccCCCcEEEE
Q 019592 78 VLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 78 ~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
.++.|. -...+++..++-.+....-+....-.+....+.|..+..++.. .+| .+|.+..+|+..+++....|+++|.
T Consensus 91 GfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 91 GFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred eEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEec
Confidence 222222 1123333333332222111211223344567788888888765 444 7899999998888888899999999
Q ss_pred eccccccchH
Q 019592 155 EGILVFHDSR 164 (338)
Q Consensus 155 dg~~~~~d~~ 164 (338)
|+|+..+|..
T Consensus 171 DEPTGNLD~~ 180 (228)
T COG4181 171 DEPTGNLDRA 180 (228)
T ss_pred cCCCCCcchh
Confidence 9999988864
No 273
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.31 E-value=2.1e-12 Score=114.73 Aligned_cols=138 Identities=10% Similarity=0.120 Sum_probs=87.3
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----C-------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----R------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----~------------- 76 (338)
.+.|++. .++++|| ++.+|.+++|+|+||||||||++.|++.+.+. |
T Consensus 11 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 11 AKTFNQHQALHAVDL---------------NIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred EEEeCCeEEEecceE---------------EEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 3455433 4788888 99999999999999999999999999988642 2
Q ss_pred ------------EEEEeCC-CCCCCCCHHHHHHccccCC--------CCcccccHHHHHHHHHHhccCCcc--ccccccC
Q 019592 77 ------------VVLVNQD-SFYHNLTEQELARVHEYNF--------DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDF 133 (338)
Q Consensus 77 ------------~~~l~~D-~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~ 133 (338)
+.++.++ .++..++..++..+..... ..........+.+.+..+...... ....+|.
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 155 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG 155 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCH
Confidence 2233333 1222233333332211100 000011123345566655543222 3346888
Q ss_pred cCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 134 ~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++.+++..+++.+.+++++++|+|+.++|+....
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 189 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESAR 189 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHH
Confidence 8888887778888999999999999999876543
No 274
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.31 E-value=5.2e-13 Score=143.82 Aligned_cols=125 Identities=16% Similarity=0.034 Sum_probs=88.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------CEEEEeCC-CCCCCCCHHHHHHccccCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RVVLVNQD-SFYHNLTEQELARVHEYNF 102 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------------~~~~l~~D-~~~~~l~~~~~~~~~~~~~ 102 (338)
.+++|.++||.|+|||||||++++|++.+.+. .+.++.++ .++..++..+...+.....
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~ 2040 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999987651 24555554 3455677777654432222
Q ss_pred CCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 103 DHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 103 ~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+.+.........+.++.+..... .....+|.|+.+++..+.+.+.+++++++|||++++|+..+..
T Consensus 2041 g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~ 2108 (2272)
T TIGR01257 2041 GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRM 2108 (2272)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 22222112334455665554332 2345799999999888888899999999999999999875543
No 275
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=2e-12 Score=111.45 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=85.6
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHccc
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~ 99 (338)
..++|||| ++.++.++||+|.|||||||+++.|.++++|. |-.++...+.. .+.
T Consensus 27 ~avd~Vsf---------------~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~-~~~--------- 81 (268)
T COG4608 27 KAVDGVSF---------------SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT-KLS--------- 81 (268)
T ss_pred EEecceeE---------------EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh-hcc---------
Confidence 56899999 99999999999999999999999999998863 44455444422 111
Q ss_pred cCCCCcccccHHHHHHHHHHhccCCcc--ccc-cccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 100 YNFDHPDAFDTEKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 100 ~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
.....+++.+.|+........ .+| .+|.+..+|+..+++.+-+++++|.|+|.+.+|...
T Consensus 82 ------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi 144 (268)
T COG4608 82 ------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144 (268)
T ss_pred ------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH
Confidence 112234456667666654432 334 799999999988888889999999999999887643
No 276
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.4e-12 Score=115.70 Aligned_cols=138 Identities=9% Similarity=-0.006 Sum_probs=82.9
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------CEEEEe------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------RVVLVN------ 81 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------~~~~l~------ 81 (338)
.+.|++ ..|+|+|| +++++.+++|+|+||||||||++.|++.+++. +-..+.
T Consensus 14 ~~~~~~~~il~~is~---------------~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 14 SFYYDTQKILEGVSM---------------EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred EEEeCCeeEeeceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhc
Confidence 445543 34677777 99999999999999999999999999988752 322222
Q ss_pred ----------------CCCCCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 82 ----------------QDSFYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 82 ----------------~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
++..+...+..++..+....++. +..-....+.+.+..+.... ......+|.++.++
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred cccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 22111012222222211100100 11001122334444443321 11224688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+.+.+.+++++++|+|+.++|+....
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~ 187 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASM 187 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 88888888999999999999999876544
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.1e-12 Score=124.95 Aligned_cols=135 Identities=9% Similarity=0.128 Sum_probs=90.4
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .++|+|| ++.+|.+++|+|+||||||||++.|++.+.+. |
T Consensus 5 ~~~~~~~~il~~vs~---------------~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 5 SKSFPGVKALDNVNL---------------KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred EEEeCCEEeeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHH
Confidence 3556554 4799999 99999999999999999999999999987641 1
Q ss_pred -----EEEEeCCC-CCCCCCHHHHHHccccCCCC---cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 77 -----VVLVNQDS-FYHNLTEQELARVHEYNFDH---PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 77 -----~~~l~~D~-~~~~l~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
+.++.++. ++..++..++..+..+.+.. ......+.+.+.++.+...... ....+|.++.+++..+.+.
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al 149 (491)
T PRK10982 70 ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAF 149 (491)
T ss_pred HHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 33444442 22334444443332211100 0011123445566665544322 3347899999998888888
Q ss_pred cCCCcEEEEeccccccchH
Q 019592 146 VNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~ 164 (338)
+.+++++|+|||++++|+.
T Consensus 150 ~~~p~lllLDEPt~~LD~~ 168 (491)
T PRK10982 150 SYNAKIVIMDEPTSSLTEK 168 (491)
T ss_pred HhCCCEEEEeCCCCCCCHH
Confidence 8999999999999999975
No 278
>PRK04182 cytidylate kinase; Provisional
Probab=99.31 E-value=3.8e-12 Score=106.39 Aligned_cols=167 Identities=17% Similarity=0.295 Sum_probs=81.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 129 (338)
+|+|+|++||||||+++.|++.++ +.+++.|++++... .. .+ .+...+.+ .... .+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~~~~~~~~~-----~~----~g----~~~~~~~~----~~~~----~~ 57 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG---LKHVSAGEIFRELA-----KE----RG----MSLEEFNK----YAEE----DP 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CcEecHHHHHHHHH-----HH----cC----CCHHHHHH----Hhhc----Cc
Confidence 799999999999999999999876 67777655432211 00 00 00000000 0000 00
Q ss_pred cccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcC
Q 019592 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFV 209 (338)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 209 (338)
.+....... . .........+|++|.+..+- .....+++|||++|.+++.+|+..|+..........+...... .
T Consensus 58 ~~~~~~~~~-~--~~~~~~~~~~Vi~g~~~~~~--~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~-~ 131 (180)
T PRK04182 58 EIDKEIDRR-Q--LEIAEKEDNVVLEGRLAGWM--AKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREES-E 131 (180)
T ss_pred hHHHHHHHH-H--HHHHhcCCCEEEEEeecceE--ecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHH-H
Confidence 000000000 0 01110223456777654321 1123689999999999999999988633211111111111111 1
Q ss_pred cchhhhhc---cCcCccccEEecCCCCcHHHHHHHHHHHHHHh
Q 019592 210 KPAFDDFI---LPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 210 ~p~~~~~i---~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
...|..++ ++....+|++|+++..+ ++++++.|.+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~d~~idt~~~~---~~~~~~~I~~~~ 171 (180)
T PRK04182 132 AKRYKEYYGIDIDDLSIYDLVINTSRWD---PEGVFDIILTAI 171 (180)
T ss_pred HHHHHHHhCCCccccccccEEEECCCCC---HHHHHHHHHHHH
Confidence 11222222 23346899999876543 344444444333
No 279
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.31 E-value=1.3e-12 Score=127.36 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=82.6
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEE----------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVL---------------- 79 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~---------------- 79 (338)
.+++||| ++..|.+++|+|+||||||||++.|++.+++ .|-..
T Consensus 24 ~l~~isl---------------~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 88 (529)
T PRK15134 24 VVNDVSL---------------QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRG 88 (529)
T ss_pred eeeceEE---------------EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHH
Confidence 5788888 9999999999999999999999999999874 23222
Q ss_pred --------EeCCC---CCCCCCHHHHHHccc-cCCCCcccccHHHHHHHHHHhccCC-----ccccccccCcCCccCCCC
Q 019592 80 --------VNQDS---FYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKLRHGQ-----AVDIPNYDFKSYKNNVFP 142 (338)
Q Consensus 80 --------l~~D~---~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~ 142 (338)
+.++. ++..++..+...... .....+.......+.+.++.+.... ......+|.++.+|+..+
T Consensus 89 ~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iA 168 (529)
T PRK15134 89 VRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIA 168 (529)
T ss_pred HhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHH
Confidence 23321 111111111111000 0001111111234455666665532 123457899999998888
Q ss_pred ccccCCCcEEEEeccccccchH
Q 019592 143 ARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~ 164 (338)
++.+.+++++++|||++.+|+.
T Consensus 169 raL~~~p~llllDEPt~~LD~~ 190 (529)
T PRK15134 169 MALLTRPELLIADEPTTALDVS 190 (529)
T ss_pred HHHhcCCCEEEEcCCCCccCHH
Confidence 8889999999999999999985
No 280
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.31 E-value=2.3e-12 Score=110.86 Aligned_cols=135 Identities=13% Similarity=0.030 Sum_probs=85.4
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+.+. |
T Consensus 18 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 18 AFSRNEEPVFGPLDF---------------HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred EEecCCceeeecceE---------------EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhh
Confidence 344533 34677777 99999999999999999999999999987652 1
Q ss_pred -EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC--ccccccccCcCCccCCCCccccCCCcEE
Q 019592 77 -VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 77 -~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
+.++.++. ++..++..++..+.....+ ....+...+.+..+.... ......+|.++.+++..++..+.+++++
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (214)
T PRK13543 83 FMAYLGHLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLW 159 (214)
T ss_pred ceEEeecCcccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 23333332 2222333333222111011 011223344555554332 2233468888888887778888999999
Q ss_pred EEeccccccchHHHh
Q 019592 153 LLEGILVFHDSRVRE 167 (338)
Q Consensus 153 Ildg~~~~~d~~~~~ 167 (338)
++|+|+..+|+....
T Consensus 160 llDEPt~~LD~~~~~ 174 (214)
T PRK13543 160 LLDEPYANLDLEGIT 174 (214)
T ss_pred EEeCCcccCCHHHHH
Confidence 999999999876543
No 281
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.30 E-value=9.9e-13 Score=132.33 Aligned_cols=143 Identities=13% Similarity=0.189 Sum_probs=101.3
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++||+|+|++...+.+.....++++|..++|+|+||||||||++.|++.+.+. .+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 457889999999876667788888899999999999999999999999999998762 24
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHH---------HHHhccCCcc----ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQAV----DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------l~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 144 (338)
.++++|.+.-+-+..++..++. |+ .+.+.+.+. +..+..|-+. .-..+|.++.+|+..+++
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALCN-----PG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred eEEccCCeehhhhHHHHHhcCC-----CC-CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 5666666554445555544322 22 222333332 3333222221 113578888888888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++|+|||++.+|+...+
T Consensus 608 ll~~~~ililDEpts~LD~~~~~ 630 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEA 630 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHH
Confidence 88999999999999999876443
No 282
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.1e-12 Score=114.52 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=73.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEE----------------------EeCCCCCCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVL----------------------VNQDSFYHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~----------------------l~~D~~~~~l~~~~~~ 95 (338)
++++|.+++|.|+||||||||++.|++.+.+ .|-.. +.++......+..++.
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl 113 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNV 113 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHH
Confidence 9999999999999999999999999998752 23222 2222111111222222
Q ss_pred HccccCCCCcc-cccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFDHPD-AFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+....++... ......+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|+.++|+..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~ 192 (259)
T PRK14274 114 AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTR 192 (259)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 21111111000 000112233344443221 1123367888888887778888999999999999999876443
No 283
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.30 E-value=2.2e-12 Score=110.26 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=83.0
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------EEEEeCCCCCCCCCHHH
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------VVLVNQDSFYHNLTEQE 93 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------~~~l~~D~~~~~l~~~~ 93 (338)
.++++|| ++++|.+++|.|+||||||||++.|++.+++. | +.++.++..+...+..+
T Consensus 20 il~~~s~---------------~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~e 84 (204)
T cd03250 20 TLKDINL---------------EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRE 84 (204)
T ss_pred eeeeeeE---------------EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHH
Confidence 5788888 99999999999999999999999999987752 2 56777775444455555
Q ss_pred HHHccccCCCCcccccHHHHHHH---------HHHhccCC----ccccccccCcCCccCCCCccccCCCcEEEEeccccc
Q 019592 94 LARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQ----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (338)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~---------l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~ 160 (338)
+..+... + +.....+. +..+..+. ......+|.++.+++..+++.+.+++++++|+|+..
T Consensus 85 nl~~~~~-~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~ 157 (204)
T cd03250 85 NILFGKP-F------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSA 157 (204)
T ss_pred HhccCCC-c------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 4433211 1 11111121 21111111 012246788888888777888899999999999999
Q ss_pred cchHH
Q 019592 161 HDSRV 165 (338)
Q Consensus 161 ~d~~~ 165 (338)
+|+..
T Consensus 158 LD~~~ 162 (204)
T cd03250 158 VDAHV 162 (204)
T ss_pred CCHHH
Confidence 98764
No 284
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.30 E-value=2.1e-12 Score=126.43 Aligned_cols=146 Identities=12% Similarity=0.182 Sum_probs=97.4
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHc
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARV 97 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~ 97 (338)
+.+.++|++|+|++. .+.+.....++++|..++|+|+||||||||++.|++.+.|. |-..++.-+ ............
T Consensus 321 ~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-~~~~~~~~~~~~ 398 (547)
T PRK10522 321 QTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP-VTAEQPEDYRKL 398 (547)
T ss_pred ceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-CCCCCHHHHhhh
Confidence 467899999999743 45788888899999999999999999999999999988763 223332221 122222222211
Q ss_pred cccCCCCc-----------ccccHHHHHHHHHHhccCCcccc-------ccccCcCCccCCCCccccCCCcEEEEecccc
Q 019592 98 HEYNFDHP-----------DAFDTEKLLSSMEKLRHGQAVDI-------PNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (338)
Q Consensus 98 ~~~~~~~~-----------~~~~~~~l~~~l~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~ 159 (338)
..+.++++ ...+.+.+.+.++.+..+..+.. ..+|.++.+|+..+++.+.+++++|+|+|++
T Consensus 399 i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 399 FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred eEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 11111111 12333445556666554433221 2578888888888888889999999999999
Q ss_pred ccchHHH
Q 019592 160 FHDSRVR 166 (338)
Q Consensus 160 ~~d~~~~ 166 (338)
.+|+...
T Consensus 479 ~LD~~~~ 485 (547)
T PRK10522 479 DQDPHFR 485 (547)
T ss_pred CCCHHHH
Confidence 9987643
No 285
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.30 E-value=9.7e-12 Score=100.80 Aligned_cols=160 Identities=16% Similarity=0.276 Sum_probs=93.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHH-HHHHHhccCCccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL-SSMEKLRHGQAVD 127 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~~~~~~~ 127 (338)
.-|.++|+.||||||+.+.||+.|+ ..+++.|............++ |...+.-.+...+ +.+..+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~Ie~~~g~sI~eI----F~~~GE~~FR~~E~~vl~~l~------ 69 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEIEKRTGMSIAEI----FEEEGEEGFRRLETEVLKELL------ 69 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHHHHHHCcCHHHH----HHHHhHHHHHHHHHHHHHHHh------
Confidence 4588999999999999999999987 788888876522111111111 1111111111111 2222221
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhc---CeEEEEecCHHHHHHHHHhhCccc--cCCCHHHHH
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVE--KGRDIATVL 202 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~---d~~i~l~~~~~~~~~R~~~R~~~~--~~~~~~~~~ 202 (338)
...+.+|.-|-.+...+..++.+ ..+|||++|.++.++|........ ...+.....
T Consensus 70 -------------------~~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l 130 (172)
T COG0703 70 -------------------EEDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREEL 130 (172)
T ss_pred -------------------hcCCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHH
Confidence 12246666666666666655554 389999999999999997322111 222333333
Q ss_pred HHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHH
Q 019592 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (338)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~ 247 (338)
........|.| .+.||+++..+..+...++++++.+..
T Consensus 131 ~~L~~~R~~~Y-------~e~a~~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 131 EELLEERQPLY-------REVADFIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred HHHHHHHHHHH-------HHhCcEEecCCCCcHHHHHHHHHHHHH
Confidence 34333344555 477999998876665555666665543
No 286
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.30 E-value=8.7e-13 Score=108.51 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=74.5
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHH
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQE 93 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~ 93 (338)
+.|++. .+++++| ++++|.+++|.|+||||||||++.|++.+++. |-..+...+.. .....+
T Consensus 8 ~~~~~~~vl~~i~~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~-~~~~~~ 71 (163)
T cd03216 8 KRFGGVKALDGVSL---------------SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS-FASPRD 71 (163)
T ss_pred EEECCeEEEeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC-cCCHHH
Confidence 444443 4688888 99999999999999999999999999988753 22333221111 000000
Q ss_pred HHHccccCCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 94 LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.. . ..-...+.+|.++.+++..+++.+.+++++++|+|+.++|+..+.
T Consensus 72 ----------------------~~---~-~~i~~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~ 119 (163)
T cd03216 72 ----------------------AR---R-AGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119 (163)
T ss_pred ----------------------HH---h-cCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 00 0 000122348888888887778888999999999999999876544
No 287
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.5e-12 Score=124.99 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=92.0
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------- 76 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------------- 76 (338)
+..+.|++. .++|+|| ++.+|.+++|+|+||||||||+++|++.+.+. |
T Consensus 10 ~l~~~~~~~~il~~vs~---------------~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 10 GIGKSFGPVHALKSVNL---------------TVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH 74 (510)
T ss_pred eeEEEcCCeEEeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH
Confidence 445677654 4799999 99999999999999999999999999987641 2
Q ss_pred -------EEEEeCCC-CCCCCCHHHHHHccccC----CCCc---ccccHHHHHHHHHHhccCCcc--ccccccCcCCccC
Q 019592 77 -------VVLVNQDS-FYHNLTEQELARVHEYN----FDHP---DAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNN 139 (338)
Q Consensus 77 -------~~~l~~D~-~~~~l~~~~~~~~~~~~----~~~~---~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~ 139 (338)
+.++.++. ++..++..++..+.... +..+ .......+.+.+..+...... ....+|.++.+++
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 33444442 23334444443322110 1100 001123445566666554322 3347899999998
Q ss_pred CCCccccCCCcEEEEeccccccchH
Q 019592 140 VFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 140 ~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
..+.+.+.+++++|+|||++++|+.
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~ 179 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNK 179 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 8888888999999999999999985
No 288
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.30 E-value=2.8e-12 Score=114.20 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=81.9
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------E
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-----------------------V 77 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-----------------------~ 77 (338)
.++|+|| ++.+|.+++|+|+||||||||++.|++.+.+. | +
T Consensus 27 il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i 91 (268)
T PRK10419 27 VLNNVSL---------------SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDI 91 (268)
T ss_pred eEeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcE
Confidence 4788888 99999999999999999999999999987642 2 2
Q ss_pred EEEeCCC---CCCCCCHHHHHHccccCC-CCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCc
Q 019592 78 VLVNQDS---FYHNLTEQELARVHEYNF-DHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 78 ~~l~~D~---~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
.++.++. |+...+..++.......+ ..........+.+.+..+.... ......+|.++.+++..+.+.+.+++
T Consensus 92 ~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~ 171 (268)
T PRK10419 92 QMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPK 171 (268)
T ss_pred EEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCC
Confidence 2333332 111222222211100000 0001111223455566554432 12334688888888888888889999
Q ss_pred EEEEeccccccchHHH
Q 019592 151 VILLEGILVFHDSRVR 166 (338)
Q Consensus 151 vlIldg~~~~~d~~~~ 166 (338)
++++|+|+.++|+...
T Consensus 172 lllLDEPt~~LD~~~~ 187 (268)
T PRK10419 172 LLILDEAVSNLDLVLQ 187 (268)
T ss_pred EEEEeCCCcccCHHHH
Confidence 9999999999987643
No 289
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.30 E-value=2e-12 Score=113.52 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=84.5
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEE------------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVV------------ 78 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l--~~-~~~~------------ 78 (338)
.+.|++ ..++|+|| ++++|.+++|+|+||||||||++.|++.+ .+ .|-.
T Consensus 7 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 7 HVSVEDKEILKGVNL---------------TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71 (243)
T ss_pred EEEECCEEEEeccce---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH
Confidence 345544 34788888 99999999999999999999999999984 32 2222
Q ss_pred ---------EEeCCC-CCCCCCHHHHHHcccc---CCCCccccc----HHHHHHHHHHhccCCc-c--ccc-cccCcCCc
Q 019592 79 ---------LVNQDS-FYHNLTEQELARVHEY---NFDHPDAFD----TEKLLSSMEKLRHGQA-V--DIP-NYDFKSYK 137 (338)
Q Consensus 79 ---------~l~~D~-~~~~l~~~~~~~~~~~---~~~~~~~~~----~~~l~~~l~~l~~~~~-~--~~~-~~~~~~~~ 137 (338)
++.++. ++..++..++...... .+.....++ ...+.+.+..+..... . ... .+|.++.+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 223321 2222233332211100 000000011 1234455555544321 1 222 38888989
Q ss_pred cCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++..+.+.+.+++++++|+|++++|+....
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~ 181 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALK 181 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 888888888999999999999999876544
No 290
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.30 E-value=9.4e-13 Score=129.57 Aligned_cols=140 Identities=14% Similarity=0.222 Sum_probs=94.7
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-C--------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-Q--------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-~--------------------~~ 77 (338)
+.+.++|++|+|++ ..+........+++|..+||+|+|||||||+++.|.+.+++ . .+
T Consensus 327 ~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 44778999998876 33555556668999999999999999999999999999987 2 24
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHH---------HHHhccCCcccc----ccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQAVDI----PNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------l~~l~~~~~~~~----~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-+-+..++..++. |+ ...+.+.+. +..+..|-+..+ ..+|.++.||+..+++
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~-----~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGR-----PD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred cEEcccceeecccHHHHHhcCC-----CC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 4555555544444555444333 22 111223322 333322222111 2577888888888888
Q ss_pred ccCCCcEEEEeccccccchHH
Q 019592 145 RVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~ 165 (338)
.+.+++++|+||+++.+|+..
T Consensus 480 ll~~~~ILILDEaTSalD~~t 500 (567)
T COG1132 480 LLRNPPILILDEATSALDTET 500 (567)
T ss_pred HhcCCCEEEEeccccccCHHh
Confidence 899999999999999986653
No 291
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.30 E-value=5.9e-12 Score=104.33 Aligned_cols=165 Identities=21% Similarity=0.285 Sum_probs=86.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 128 (338)
++|+|+|++||||||+++.|++.++ +.+++.|++++.... . ++ .+...+.... ...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~~~~----~-----~g----~~~~~~~~~~---~~~----- 56 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRELAA----K-----MG----LDLIEFLNYA---EEN----- 56 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHHHHH----H-----cC----CCHHHHHHHH---hcC-----
Confidence 3799999999999999999999875 778887654422110 0 00 0000000000 000
Q ss_pred ccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhc
Q 019592 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKF 208 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 208 (338)
+.+....... ........+.+|+||.+..+. +...+|++|||++|.+++.+|+.+|+....+.....+..+...
T Consensus 57 ~~~~~~~~~~---i~~~~~~~~~~Vi~g~~~~~~--~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~- 130 (171)
T TIGR02173 57 PEIDKKIDRR---IHEIALKEKNVVLESRLAGWI--VREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREES- 130 (171)
T ss_pred cHHHHHHHHH---HHHHHhcCCCEEEEeccccee--ecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHH-
Confidence 0000000000 001111234567788776432 2345789999999999999999999754333222222222111
Q ss_pred CcchhhhhccC---cCccccEEecCCCCcHHHHHHHHHHHHH
Q 019592 209 VKPAFDDFILP---TKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (338)
Q Consensus 209 ~~p~~~~~i~~---~~~~aD~iI~~~~~~~~~~~~~~~~i~~ 247 (338)
....|..+... .....|++|+++..+ .++ ++.|.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~ydl~i~t~~~~---~~~-~~~i~~ 168 (171)
T TIGR02173 131 EKRRYLKFYGIDIDDLSIYDLVINTSNWD---PNN-VDIILD 168 (171)
T ss_pred HHHHHHHHhCCCccccccccEEEECCCCC---HHH-HHHHHH
Confidence 11223333322 235668999776443 444 444443
No 292
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.30 E-value=4.2e-11 Score=99.29 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=85.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccH-HHHHHHHHHhccCCcc
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDT-EKLLSSMEKLRHGQAV 126 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~~~~ 126 (338)
+..|+|+|++||||||+++.|++.++ +.+++.|.............. |...+.-.+ +.-.+.+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~~g~~i~~~----~~~~g~~~fr~~e~~~l~~l~----- 71 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKRTGADIGWV----FDVEGEEGFRDREEKVINELT----- 71 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHHhCcCHhHH----HHHhCHHHHHHHHHHHHHHHH-----
Confidence 45699999999999999999999875 778888864321111000000 110000000 11111222211
Q ss_pred ccccccCcCCccCCCCccccCCCcEEEEeccccccchH---HHhhcCeEEEEecCHHHHHHHHHhhCccc--cCCCHHHH
Q 019592 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR---VRELMNMKIFVDTDADVRLARRIRRDTVE--KGRDIATV 201 (338)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~---~~~~~d~~i~l~~~~~~~~~R~~~R~~~~--~~~~~~~~ 201 (338)
....+++.-|-.....+. +.+..+.+|||++|.+++++|+..+.... .+......
T Consensus 72 --------------------~~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~ 131 (172)
T PRK05057 72 --------------------EKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREV 131 (172)
T ss_pred --------------------hCCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHH
Confidence 112234444433333333 33456789999999999999997553221 12223333
Q ss_pred HHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHH
Q 019592 202 LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 202 ~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
...+.....|.| .+.||++|+++..+ .+++.+.|.+.
T Consensus 132 ~~~l~~~R~~~Y-------~~~Ad~~idt~~~s---~~ei~~~i~~~ 168 (172)
T PRK05057 132 LEALANERNPLY-------EEIADVTIRTDDQS---AKVVANQIIHM 168 (172)
T ss_pred HHHHHHHHHHHH-------HhhCCEEEECCCCC---HHHHHHHHHHH
Confidence 444444345555 46799999866443 34444444433
No 293
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3e-12 Score=114.86 Aligned_cols=123 Identities=11% Similarity=-0.049 Sum_probs=76.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CC----------------------EEEEeCCCCCCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR----------------------VVLVNQDSFYHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~----------------------~~~l~~D~~~~~l~~~~~~ 95 (338)
++.+|.+++|.|+||||||||++.|++.+++ .| +.++.++......+..++.
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 140 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNV 140 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHH
Confidence 9999999999999999999999999998751 22 2233333211112333332
Q ss_pred HccccCCCCcccccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.......+. .....+.+.+..+.... ......+|.++.+++..+++.+.+++++|+|+|+.++|+....
T Consensus 141 ~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 141 AYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 22111111111 11223444555543321 1233478888888888888888999999999999999876443
No 294
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.30 E-value=2.9e-11 Score=100.49 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+++..|.|+|++||||||+++.|++.++ +.+++.|.+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~ 39 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLI 39 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHH
Confidence 5678999999999999999999999986 6778887654
No 295
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.29 E-value=1.2e-12 Score=109.62 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=80.9
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHH
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQE 93 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~ 93 (338)
+.|++ ..++++|| .+.++.+++|.|+||||||||++.|++.+++. |-..+...+.. ......
T Consensus 7 ~~~~~~~~l~~~~~---------------~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~-~~~~~~ 70 (180)
T cd03214 7 VGYGGRTVLDDLSL---------------SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA-SLSPKE 70 (180)
T ss_pred EEECCeeeEeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-cCCHHH
Confidence 44544 34789999 99999999999999999999999999988653 33444332221 111111
Q ss_pred HHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 94 LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
......+.++ .++.+..... .....+|.++.+++..+++.+.+++++++|+|+.++|+....
T Consensus 71 ~~~~i~~~~q------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~ 134 (180)
T cd03214 71 LARKIAYVPQ------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQI 134 (180)
T ss_pred HHHHHhHHHH------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 1111111111 3333332221 123468888888888778888999999999999999876433
No 296
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.29 E-value=1.4e-12 Score=110.40 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=74.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CCC-CEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHh
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL--HDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKL 120 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l--~~~-~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 120 (338)
++.++.+++|.|+||||||||++.|++.+ ++. |-..++..+.. .........+.++.+..+....+.+.+...
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~----~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~ 106 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD----KRSFRKIIGYVPQDDILHPTLTVRETLMFA 106 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc----hHhhhheEEEccCcccCCCCCcHHHHHHHH
Confidence 99999999999999999999999999988 643 33334332221 111112223444444333222222222211
Q ss_pred ccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 121 RHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.. ...+|.++.+++..+++.+.+++++++|+|+.++|+..++
T Consensus 107 ~~-----~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 148 (194)
T cd03213 107 AK-----LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSAL 148 (194)
T ss_pred HH-----hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 10 0158888888888888888999999999999999876544
No 297
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.7e-12 Score=112.43 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=84.7
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CC-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QR----------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~----~~----------- 76 (338)
.+.|++ ..++|+|| ++++|.+++|+|+||||||||++.|++.+. + .|
T Consensus 11 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 11 NVHFGKNHAVKDVSM---------------DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEeCCeeEEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 344533 34678888 999999999999999999999999999874 1 12
Q ss_pred -----------EEEEeCCC-CCCCCCHHHHHHccccCCCCcc-cccHHHHHHHHHHhccCC------ccccccccCcCCc
Q 019592 77 -----------VVLVNQDS-FYHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYK 137 (338)
Q Consensus 77 -----------~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~ 137 (338)
+.++.++. ++...+..++..+.......+. ......+.+.+..+.... ......+|.++.+
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 23333332 2223344443322111111111 011122344444444321 1123468888888
Q ss_pred cCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++..+.+.+.+++++++|+|+.++|+....
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~ 185 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTL 185 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 887778888999999999999999876443
No 298
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.29 E-value=2e-12 Score=111.78 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=85.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------E
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-----------------------V 77 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-----------------------~ 77 (338)
.++++|| +.+.|.+++|.|+||||||||++.|++.+++. | +
T Consensus 20 il~~vs~---------------~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (220)
T TIGR02982 20 VLFDINL---------------EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNI 84 (220)
T ss_pred EEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhhe
Confidence 4788888 99999999999999999999999999987642 1 2
Q ss_pred EEEeCCC-CCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEE
Q 019592 78 VLVNQDS-FYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 78 ~~l~~D~-~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
.++.++. ++...+..++..+....+.. ........+.+.++.+...... ....+|.++.+++..+.+.+.++++++
T Consensus 85 ~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ill 164 (220)
T TIGR02982 85 GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVL 164 (220)
T ss_pred EEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3333332 22223444433322211110 0011112345566665544322 233688888888877788889999999
Q ss_pred EeccccccchHHHh
Q 019592 154 LEGILVFHDSRVRE 167 (338)
Q Consensus 154 ldg~~~~~d~~~~~ 167 (338)
+|+|+.++|+....
T Consensus 165 lDEP~~~LD~~~~~ 178 (220)
T TIGR02982 165 ADEPTAALDSKSGR 178 (220)
T ss_pred EeCCCCcCCHHHHH
Confidence 99999999876543
No 299
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.29 E-value=1.8e-12 Score=114.80 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=84.2
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC-----CCC
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-----FYH 87 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~-----~~~ 87 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+++. |-..+...+ ..
T Consensus 13 ~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~- 76 (258)
T PRK11701 13 TKLYGPRKGCRDVSF---------------DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY- 76 (258)
T ss_pred EEEcCCceeeeeeeE---------------EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc-
Confidence 445543 34688888 99999999999999999999999999988652 323332222 11
Q ss_pred CCCHHHH----HHccccCCCCcc-------------------------cccHHHHHHHHHHhccCC-c--cccccccCcC
Q 019592 88 NLTEQEL----ARVHEYNFDHPD-------------------------AFDTEKLLSSMEKLRHGQ-A--VDIPNYDFKS 135 (338)
Q Consensus 88 ~l~~~~~----~~~~~~~~~~~~-------------------------~~~~~~l~~~l~~l~~~~-~--~~~~~~~~~~ 135 (338)
....... .....+.++++. ........+.++.+.... . .....+|.++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM 156 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence 1111110 000111111110 000122334555555432 1 2334688888
Q ss_pred CccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 136 YKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 136 ~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++..+++.+.+++++|+|+|+.++|+....
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~ 188 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQA 188 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 88888888888999999999999999876543
No 300
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.29 E-value=3e-12 Score=124.17 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=90.0
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CC--------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QR-------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---~~-------------- 76 (338)
.+.|++. .+++||| ++.+|.+++|+|+||||||||++.|++.+++ .|
T Consensus 8 ~~~~~~~~il~~isl---------------~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 8 VKTFGGVKALDGIDL---------------EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEeCCeEeecceEE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH
Confidence 4556554 4799999 9999999999999999999999999998764 23
Q ss_pred -------EEEEeCCC-CCCCCCHHHHHHccccCCC----CcccccHHHHHHHHHHhccCCc---cccccccCcCCccCCC
Q 019592 77 -------VVLVNQDS-FYHNLTEQELARVHEYNFD----HPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVF 141 (338)
Q Consensus 77 -------~~~l~~D~-~~~~l~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~ 141 (338)
+.++.++. ++..++..++..+....+. .+.......+.+.++.+..... .....+|.++.+++..
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHH
Confidence 23333332 2233444444332211110 0000112334556666655432 2244799999999888
Q ss_pred CccccCCCcEEEEeccccccchH
Q 019592 142 PARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+.+.+.+++++++|||++++|+.
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~ 175 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEK 175 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHH
Confidence 88888999999999999999985
No 301
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.29 E-value=2.4e-12 Score=117.62 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=83.6
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHH-
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELAR- 96 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----~~~~~l~~D~~~~~l~~~~~~~- 96 (338)
.|+|||| ++.+|.+++|.|+||||||||++.|++.+.+ .|-..++..+.. .+...+...
T Consensus 31 ~l~~vsl---------------~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~-~~~~~~~~~~ 94 (330)
T PRK09473 31 AVNDLNF---------------SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL-NLPEKELNKL 94 (330)
T ss_pred EEeeeEE---------------EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECC-cCCHHHHHHH
Confidence 4788888 9999999999999999999999999999875 233333322211 111111110
Q ss_pred ---ccccCCCCcc-------------------------cccHHHHHHHHHHhccCCc-----cccccccCcCCccCCCCc
Q 019592 97 ---VHEYNFDHPD-------------------------AFDTEKLLSSMEKLRHGQA-----VDIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 97 ---~~~~~~~~~~-------------------------~~~~~~l~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~~~ 143 (338)
...+.|++|. .-....+.+.+..+..... .....+|.++.+|+..+.
T Consensus 95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IAr 174 (330)
T PRK09473 95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAM 174 (330)
T ss_pred hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHH
Confidence 1122222221 0011233444554443321 122368999999988888
Q ss_pred cccCCCcEEEEeccccccchHHHhh
Q 019592 144 RRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+.+.+++++|+|+|+.++|......
T Consensus 175 AL~~~P~llilDEPts~LD~~~~~~ 199 (330)
T PRK09473 175 ALLCRPKLLIADEPTTALDVTVQAQ 199 (330)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHH
Confidence 8899999999999999998765543
No 302
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.29 E-value=1.5e-12 Score=113.12 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=80.8
Q ss_pred ccCccccccCCC-CCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEE
Q 019592 23 MDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLV 80 (338)
Q Consensus 23 l~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l 80 (338)
+++++++|++.. .+........+++|.+++|+|+||||||||++.|++.+++. | +.++
T Consensus 14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 93 (226)
T cd03248 14 FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLV 93 (226)
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence 444444443221 12333333499999999999999999999999999988652 2 2223
Q ss_pred eCCCCCCCCCHHHHHHccccCCCCcccccH----HHHHHHHHHhcc--CCc--cccccccCcCCccCCCCccccCCCcEE
Q 019592 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRH--GQA--VDIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 81 ~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
.++..+...+..++..+...... ...... ..+.+.+..+.. ... .....+|.++.+++..+.+.+.+++++
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 172 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCS-FECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVL 172 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCC-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 33221111122121111100000 000000 011233444421 111 123468888888888788888999999
Q ss_pred EEeccccccchHHHh
Q 019592 153 LLEGILVFHDSRVRE 167 (338)
Q Consensus 153 Ildg~~~~~d~~~~~ 167 (338)
|+|+|+.++|+....
T Consensus 173 llDEPt~~LD~~~~~ 187 (226)
T cd03248 173 ILDEATSALDAESEQ 187 (226)
T ss_pred EEeCCcccCCHHHHH
Confidence 999999999876544
No 303
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.3e-12 Score=112.66 Aligned_cols=138 Identities=9% Similarity=-0.010 Sum_probs=82.4
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CC-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR----------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~----------- 76 (338)
.+.|++ ..++|+|| ++++|.+++|.|+||||||||++.|++.+.+ .|
T Consensus 10 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 10 DLFYGDFQALKKINL---------------DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred EEEECCceeeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 344433 24677777 9999999999999999999999999997541 22
Q ss_pred -----------EEEEeCCCCCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 77 -----------VVLVNQDSFYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 77 -----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
+.++.++......+..++..+....++. +.....+.+.+.+..+.... ......+|.++.++
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred cccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHH
Confidence 2333333211113333332221111110 00001122333333333211 11234688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+++.+.+++++++|+|+.++|+..+.
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~ 183 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTL 183 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 88888888999999999999999876443
No 304
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.29 E-value=7.3e-11 Score=99.27 Aligned_cols=167 Identities=10% Similarity=0.086 Sum_probs=82.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc-
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV- 126 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~- 126 (338)
+.+++|+|||||||||+++.|++.+++ .+...+............ .+.+-.++ .+...+ ..+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~---~~~~~~~ 67 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSE---NHIALSEQ-----EFFTRA---GQNLFAL 67 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHH---hheeEcHH-----HHHHHH---HCCchhh
Confidence 568999999999999999999998763 334444433221111111 11111111 111111 111100
Q ss_pred --ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhc---CeEEEEecCHHHHHHHHHhhCccccCCCHHHH
Q 019592 127 --DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATV 201 (338)
Q Consensus 127 --~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~---d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~ 201 (338)
......+++.... ...+.....+|++|-.... ..+++.+ -.+||+++|.++..+|+..|+.. ..+.+
T Consensus 68 ~~~~~g~~yg~~~~~---~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~----~~~~i 139 (186)
T PRK10078 68 SWHANGLYYGVGIEI---DLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRGRE----NASEI 139 (186)
T ss_pred HHHHhCCccCCcHHH---HHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCC----CHHHH
Confidence 0001112222211 1122334456677765443 2333333 25789999999999999888532 23333
Q ss_pred HHHHhhcCcchhhhhccCcCcccc-EEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 202 LDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 202 ~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
...+... + ....+| ++|+++. +++++.+.|...+.
T Consensus 140 ~~rl~r~--~--------~~~~ad~~vi~~~~----s~ee~~~~i~~~l~ 175 (186)
T PRK10078 140 NARLARA--A--------RYQPQDCHTLNNDG----SLRQSVDTLLTLLH 175 (186)
T ss_pred HHHHHHh--h--------hhccCCEEEEeCCC----CHHHHHHHHHHHHh
Confidence 3333221 1 123567 5665443 35555666655553
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.29 E-value=3e-12 Score=124.65 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=84.1
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEEEEe---------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVN--------- 81 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l--~~-~~~~~l~--------- 81 (338)
.+.|++. .++++|| ++..|.+++|+|+||||||||++.|++.+ .+ .|-..+.
T Consensus 7 ~~~~~~~~~l~~is~---------------~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 7 TKKFDGKEVLKNISF---------------TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71 (520)
T ss_pred EEEECCeEeeeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccc
Confidence 4566553 4799999 99999999999999999999999999986 33 2333332
Q ss_pred --------------------------------------------CC--CCCCCCCHHHHHHccccCCCCcccccHHHHHH
Q 019592 82 --------------------------------------------QD--SFYHNLTEQELARVHEYNFDHPDAFDTEKLLS 115 (338)
Q Consensus 82 --------------------------------------------~D--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (338)
++ .++..++..+...+....+..+.......+.+
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 10 00111111111111000000000001123344
Q ss_pred HHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 116 SMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 116 ~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
.++.+..... .....+|.++.+|+..+.+.+.+++++++|||++++|+..
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~ 203 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT 203 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHH
Confidence 5555544332 2335789999999888888889999999999999999853
No 306
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=7.1e-12 Score=107.62 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=88.6
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------- 75 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------- 75 (338)
..+++++++ +++| ..+...+.+|.|+|||||||+.++++++..|.
T Consensus 7 ~~~lG~~~l-~a~~---------------~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~ 70 (352)
T COG4148 7 RQRLGNFAL-DANF---------------TLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIF 70 (352)
T ss_pred hhhcCceEE-EEec---------------cCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcc
Confidence 356778888 6777 77888999999999999999999999998862
Q ss_pred ------CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc-ccc-cccCcCCccCCCCcccc
Q 019592 76 ------RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRV 146 (338)
Q Consensus 76 ------~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 146 (338)
++.|+.|| ..+..++...+..++... .+...+.+.+..+..+.-. .+| .+|.+..+|+...++.+
T Consensus 71 lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~------~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALL 144 (352)
T COG4148 71 LPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK------SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALL 144 (352)
T ss_pred cChhhheeeeEeeccccccceEEecchhhhhcc------cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHh
Confidence 34455555 333444444443332221 1233444445444444322 233 78999999999889999
Q ss_pred CCCcEEEEeccccccch
Q 019592 147 NPSDVILLEGILVFHDS 163 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~ 163 (338)
..|+++++|+|++.+|.
T Consensus 145 t~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 145 TAPELLLMDEPLASLDL 161 (352)
T ss_pred cCCCeeeecCchhhccc
Confidence 99999999999998774
No 307
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.29 E-value=3.5e-12 Score=127.06 Aligned_cols=147 Identities=8% Similarity=0.070 Sum_probs=103.7
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCCCCCCC
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQDSFYHN 88 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~D~~~~~ 88 (338)
+.+.++||+++|++. .+.+.....++++|.+++|+|+||||||||++.|++.+++. .+.++.++.+...
T Consensus 450 ~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred CeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence 457789999988643 35677777789999999999999999999999999987652 3577888876544
Q ss_pred CCHHHHHHccccCCC--CcccccHHHHHHHHHHhccCCccc-----------cccccCcCCccCCCCccccCCCcEEEEe
Q 019592 89 LTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQAVD-----------IPNYDFKSYKNNVFPARRVNPSDVILLE 155 (338)
Q Consensus 89 l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~vlIld 155 (338)
.+..++..++....+ .+ ....+.+.+.++.+.....+. ...+|.++.+|+..+++.+.+++++|+|
T Consensus 529 ~tv~eni~~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD 607 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRR-GLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD 607 (659)
T ss_pred cCHHHHHhcCCChhhhhcc-CCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 466665544321110 11 122344555555544332221 1368888899988888889999999999
Q ss_pred ccccccchHHHh
Q 019592 156 GILVFHDSRVRE 167 (338)
Q Consensus 156 g~~~~~d~~~~~ 167 (338)
||++.+|+....
T Consensus 608 Epts~LD~~~~~ 619 (659)
T TIGR00954 608 ECTSAVSVDVEG 619 (659)
T ss_pred CCccCCCHHHHH
Confidence 999999876433
No 308
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.4e-12 Score=112.58 Aligned_cols=137 Identities=12% Similarity=0.003 Sum_probs=81.7
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CC------------
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR------------ 76 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~------------ 76 (338)
+.|++ ..++++|| ++.+|.+++|.|+||||||||+++|++.+++ .|
T Consensus 11 ~~~~~~~~l~~i~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 11 AYYGEKKAVKNVTM---------------KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred EEeCCceeEeeeeE---------------eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 44543 34788888 9999999999999999999999999987752 22
Q ss_pred ----------EEEEeCCCCCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccCC------ccccccccCcCCccC
Q 019592 77 ----------VVLVNQDSFYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNN 139 (338)
Q Consensus 77 ----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~ 139 (338)
+.++.++......+..++..+....... +.......+.+.++.+.... ......+|.++.+++
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 76 QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 2233333221112333322221111100 00011112233343333221 112346788888887
Q ss_pred CCCccccCCCcEEEEeccccccchHHHh
Q 019592 140 VFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 140 ~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..+.+.+.+++++++|+|+.++|+....
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~ 183 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQ 183 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHH
Confidence 7778888999999999999999876443
No 309
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.29 E-value=1.3e-12 Score=139.66 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=100.7
Q ss_pred ccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------------
Q 019592 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------------- 74 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------------- 74 (338)
+.+.++||+|+||.. ..+.+.....++++|..++|+|+|||||||+++.|.+.+.|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 458899999999864 34788888899999999999999999999999999999885
Q ss_pred --------------------------------CC--------------------EEEEeCCCCCCCCCHHHHHHccccCC
Q 019592 75 --------------------------------QR--------------------VVLVNQDSFYHNLTEQELARVHEYNF 102 (338)
Q Consensus 75 --------------------------------~~--------------------~~~l~~D~~~~~l~~~~~~~~~~~~~ 102 (338)
.| +.+++|+.+.-+.+..++..++.
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~--- 1320 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK--- 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC---
Confidence 22 34455555555555555555432
Q ss_pred CCcccccHHHHHHHH---------HHhccCCcccc----ccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 103 DHPDAFDTEKLLSSM---------EKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 103 ~~~~~~~~~~l~~~l---------~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
|+ ...+.+.+.+ ..+..|-+..+ ..+|.|+.||+..+++.+.+++++|+||+++.+|+..
T Consensus 1321 --~~-at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1321 --ED-ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred --CC-CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 22 1223333333 33333322111 2588889999888899999999999999999987654
No 310
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.9e-12 Score=117.61 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=96.6
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE-EEEeCCCCCCCCCHHHHHH--
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV-VLVNQDSFYHNLTEQELAR-- 96 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~-~~l~~D~~~~~l~~~~~~~-- 96 (338)
...++|++|+||+..++.+..-..+..+|.-|+|.|+|||||||+++.+.+.+.+..- ..++.-+ ...++.....+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~-~~~l~~~~~~e~i 414 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVE-IASLDEQALRETI 414 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcC-hhhCChhhHHHHH
Confidence 3578999999999999999999999999999999999999999999999998876422 2222211 11122211000
Q ss_pred --------------ccccCCCCcccccHHHHHHHHHHhccCCcc-------------ccccccCcCCccCCCCccccCCC
Q 019592 97 --------------VHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 97 --------------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
..+....+|++-| +.+.+.++.....+-+ .-..+|++..+|+..++..+++.
T Consensus 415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 415 SVLTQRVHLFSGTLRDNLRLANPDASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred hhhccchHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 0111233455333 3333444333222111 11257888888888888888999
Q ss_pred cEEEEeccccccchHH
Q 019592 150 DVILLEGILVFHDSRV 165 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~ 165 (338)
+++++|||+.++|+..
T Consensus 494 pl~lLDEPTegLD~~T 509 (573)
T COG4987 494 PLWLLDEPTEGLDPIT 509 (573)
T ss_pred CeEEecCCcccCChhh
Confidence 9999999999998763
No 311
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.28 E-value=3.8e-12 Score=112.06 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=83.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE--------------------EEEe
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV--------------------VLVN 81 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~--------------------~~l~ 81 (338)
.|+++|| ++..|.+++|+|+||||||||++.|++.+++.|- .++.
T Consensus 11 ~l~~vsl---------------~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 11 RLGPLSA---------------EVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred eecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEec
Confidence 6899999 9999999999999999999999999998754332 2333
Q ss_pred CCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccC-------CCcE
Q 019592 82 QDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN-------PSDV 151 (338)
Q Consensus 82 ~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~v 151 (338)
++. ++..++..++..+... ...........+.+.++.+...... ....+|.++.+++..+.+.+. ++++
T Consensus 76 q~~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred ccCccCCCccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 331 2223333333332211 0001111123445566655543322 334688888888777667665 6799
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+++|+|+.++|+....
T Consensus 155 lllDEPt~~LD~~~~~ 170 (248)
T PRK03695 155 LLLDEPMNSLDVAQQA 170 (248)
T ss_pred EEEcCCcccCCHHHHH
Confidence 9999999999876543
No 312
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.5e-12 Score=113.49 Aligned_cols=124 Identities=10% Similarity=-0.026 Sum_probs=75.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CC----------------------EEEEeCCCCCCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR----------------------VVLVNQDSFYHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~----------------------~~~l~~D~~~~~l~~~~~~ 95 (338)
++.+|.+++|.|+||||||||++.|++.+.+ .| +.++.++......+..++.
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni 121 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENI 121 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHH
Confidence 9999999999999999999999999998752 22 2333333211112333332
Q ss_pred HccccCCCC-cccccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+....... ........+.+.+..+.... ......+|.++.+++..+++.+.+++++++|+|+.++|+....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 200 (267)
T PRK14237 122 TFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTM 200 (267)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 221111100 00011122333444443321 1123468888888887778888999999999999999876443
No 313
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.28 E-value=3.1e-12 Score=113.36 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=83.9
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE-------EEEeCCC-CCCCCCH
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV-------VLVNQDS-FYHNLTE 91 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~-------~~l~~D~-~~~~l~~ 91 (338)
..++++|| ++++|.+++|+|+||||||||+++|++.+++. |- .++.++. +...++.
T Consensus 38 ~il~~is~---------------~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 38 FALDDISL---------------KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTG 102 (264)
T ss_pred EEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcH
Confidence 35789999 99999999999999999999999999988753 21 2222232 2233455
Q ss_pred HHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 92 QELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.++..+.................+.+..+..+... ....+|.++.+++..+.+.+.+++++++|+|+.++|+...
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~ 179 (264)
T PRK13546 103 IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFA 179 (264)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHH
Confidence 44433221111111111111222334433333322 3346888888888777888899999999999999987643
No 314
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.28 E-value=2e-12 Score=113.98 Aligned_cols=130 Identities=16% Similarity=0.254 Sum_probs=89.3
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE------EEEeCCCCCCCCCHHHH
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV------VLVNQDSFYHNLTEQEL 94 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~------~~l~~D~~~~~l~~~~~ 94 (338)
..|+|||| +++++.++||+|.|||||||+++.+.++++..+. ..+...+ .-.++..+.
T Consensus 19 ~av~~vs~---------------~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~-l~~l~~~~~ 82 (316)
T COG0444 19 KAVDGVSF---------------ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD-LLSLSEKEL 82 (316)
T ss_pred EEEeceeE---------------EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc-cccCCHHHH
Confidence 46899999 9999999999999999999999999999973211 2222222 223444332
Q ss_pred HH----ccccCCCCccc-c-------------------------cHHHHHHHHHHhccCCc--c--ccc-cccCcCCccC
Q 019592 95 AR----VHEYNFDHPDA-F-------------------------DTEKLLSSMEKLRHGQA--V--DIP-NYDFKSYKNN 139 (338)
Q Consensus 95 ~~----~~~~~~~~~~~-~-------------------------~~~~l~~~l~~l~~~~~--~--~~~-~~~~~~~~~~ 139 (338)
.. ...+.|++|.. + ..++..+.|+.+..... + .+| .+|++|.+|+
T Consensus 83 ~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV 162 (316)
T COG0444 83 RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRV 162 (316)
T ss_pred HhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHH
Confidence 22 12334555431 0 12234455555555543 1 444 7999999999
Q ss_pred CCCccccCCCcEEEEeccccccchHHH
Q 019592 140 VFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 140 ~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
..+.+.+.+++++|.|||+..+|....
T Consensus 163 ~IAmala~~P~LlIADEPTTALDvt~Q 189 (316)
T COG0444 163 MIAMALALNPKLLIADEPTTALDVTVQ 189 (316)
T ss_pred HHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence 888889999999999999999886543
No 315
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.28 E-value=2.6e-11 Score=101.08 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=33.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~ 85 (338)
+.++|.+|+|+|++||||||+++.|++.+.. .++.+++.|.+
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 4678899999999999999999999998863 23566666543
No 316
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=4e-12 Score=113.22 Aligned_cols=125 Identities=12% Similarity=-0.055 Sum_probs=73.3
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----C-CCE----------------------EEEeCCCCCCCCCHHHH
Q 019592 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLH-----D-QRV----------------------VLVNQDSFYHNLTEQEL 94 (338)
Q Consensus 43 ~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~-----~-~~~----------------------~~l~~D~~~~~l~~~~~ 94 (338)
.++.+|.+++|.|+||||||||+++|++.+. + .|- .++.++......+..++
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 121 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNN 121 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHH
Confidence 3899999999999999999999999999753 1 222 23333321111122222
Q ss_pred HHccccCCCC-cccccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 95 ARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..+....... ........+.+.+..+.... ......+|.++.+++..+++.+.+++++|+|+|+.++|+....
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 201 (268)
T PRK14248 122 ITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNA 201 (268)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHH
Confidence 2211100000 00001122233343332211 1123468888888887788888999999999999999876543
No 317
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=1.8e-12 Score=113.14 Aligned_cols=131 Identities=14% Similarity=0.115 Sum_probs=79.1
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEE
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVL 79 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~ 79 (338)
..+++++| ++++|.+++|+|+||||||||++.|++.+.+. | +.+
T Consensus 16 ~~l~~i~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 16 PVLRDISL---------------DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred cceeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 35788888 99999999999999999999999999988652 2 233
Q ss_pred EeCCCCCCCCCHHHHHHccccCCCCcccccH----HHHHHHHHHhccC--C--ccccccccCcCCccCCCCccccCCCcE
Q 019592 80 VNQDSFYHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHG--Q--AVDIPNYDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 80 l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (338)
+.++......+..++..+....+. ...+.. ..+.+.+..+..+ . ......+|.++.+++..+.+.+.++++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGAT-REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCC-HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 333322212233332222111100 000000 0111222222111 1 112336788888888778888899999
Q ss_pred EEEeccccccchHHHh
Q 019592 152 ILLEGILVFHDSRVRE 167 (338)
Q Consensus 152 lIldg~~~~~d~~~~~ 167 (338)
+++|+|+.++|+....
T Consensus 160 llLDEP~~~LD~~~~~ 175 (234)
T cd03251 160 LILDEATSALDTESER 175 (234)
T ss_pred EEEeCccccCCHHHHH
Confidence 9999999999876443
No 318
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.7e-12 Score=112.43 Aligned_cols=138 Identities=11% Similarity=0.082 Sum_probs=83.1
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CC-----------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR----------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~----------- 76 (338)
.+.|++. .++++|| ++++|.+++|+|+||||||||++.|++.+.+ .|
T Consensus 11 ~~~~~~~~~l~~~sl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 11 HLSYGNYEALHGISL---------------DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred EEEECCeeeeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 4455443 4678888 9999999999999999999999999998741 22
Q ss_pred -----------EEEEeCCCCCCCCCHHHHHHccccCCCCcc-cccHHHHHHHHHHhccC----C--ccccccccCcCCcc
Q 019592 77 -----------VVLVNQDSFYHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKN 138 (338)
Q Consensus 77 -----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~----~--~~~~~~~~~~~~~~ 138 (338)
+.++.++..+...+..++..+....++... ......+.+.++.+... . ......+|.++.++
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred ccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 223333321112233333222111111000 00112233344443321 0 11234688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+++.+.+++++++|+|+.++|+....
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~ 184 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSS 184 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHH
Confidence 87777888999999999999999876543
No 319
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=4.6e-12 Score=111.68 Aligned_cols=138 Identities=11% Similarity=-0.002 Sum_probs=82.0
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEE---------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVV--------- 78 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~--------- 78 (338)
.+.|++ ..++++|| ++.+|.+++|+|+||||||||+++|++.+++ .|-.
T Consensus 10 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 10 DLFYGENQALKSINL---------------PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred EEEECCeeeeecceE---------------EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 345543 34788888 9999999999999999999999999998763 2222
Q ss_pred ------------EEeCCCCCCCCCHHHHHHccccCCCCc-ccccHHHHHHHHHHhccCC------ccccccccCcCCccC
Q 019592 79 ------------LVNQDSFYHNLTEQELARVHEYNFDHP-DAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNN 139 (338)
Q Consensus 79 ------------~l~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~ 139 (338)
++.++......+..++..+....+... .......+.+.++.+.... ......+|.++.+++
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred ccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH
Confidence 233332111123322222111111100 0001112223333332211 112235788888888
Q ss_pred CCCccccCCCcEEEEeccccccchHHHh
Q 019592 140 VFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 140 ~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..+++.+.+++++|+|+|+.++|+....
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~ 182 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATH 182 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 7778888999999999999999876543
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=99.28 E-value=1.3e-12 Score=127.95 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=91.5
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCC-CCCCCCHH
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDS-FYHNLTEQ 92 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------~~~~l~~D~-~~~~l~~~ 92 (338)
.++|++++|.+. .+.....++.+|.+++|.|+||||||||++.|++.+.+. .+.++.++. ....++..
T Consensus 342 ~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~ 418 (590)
T PRK13409 342 EYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVE 418 (590)
T ss_pred EEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHH
Confidence 356666655321 133334478999999999999999999999999988753 234556653 23345555
Q ss_pred HHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++.......+. ......+.+..+..... .....+|.++.+++..+.+.+.+++++++|+|++++|+..+.
T Consensus 419 e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~ 490 (590)
T PRK13409 419 DLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRL 490 (590)
T ss_pred HHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 54433211111 11233455666554332 234579999999988888888999999999999999876544
No 321
>PRK13949 shikimate kinase; Provisional
Probab=99.28 E-value=8.7e-12 Score=102.97 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=62.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccH-HHHHHHHHHhccCCccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDT-EKLLSSMEKLRHGQAVD 127 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~~~~~ 127 (338)
.-|+|+|++||||||+++.|++.++ +.+++.|.++..........+ |...+.-.+ +...+.+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i~~~~~~~~~~~----~~~~g~~~fr~~e~~~l~~l------- 67 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFIENRFHKTVGDI----FAERGEAVFRELERNMLHEV------- 67 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHHHHHHCccHHHH----HHHhCHHHHHHHHHHHHHHH-------
Confidence 3589999999999999999999986 788888865421100000000 110000001 1111122211
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccch---HHHhhcCeEEEEecCHHHHHHHHHh
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS---RVRELMNMKIFVDTDADVRLARRIR 188 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~---~~~~~~d~~i~l~~~~~~~~~R~~~ 188 (338)
......+|..|......+ ...+..+++|||++|.++.++|+..
T Consensus 68 ------------------~~~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~ 113 (169)
T PRK13949 68 ------------------AEFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRL 113 (169)
T ss_pred ------------------HhCCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhc
Confidence 112345666665443333 3445568999999999999999863
No 322
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.28 E-value=1.7e-12 Score=113.59 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=76.5
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE--------------------EE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV--------------------LV 80 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~--------------------~l 80 (338)
.++++|| ++++|.+++|+|+||||||||++.|++.+++. |-. ++
T Consensus 18 ~l~~i~~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (238)
T cd03249 18 ILKGLSL---------------TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLV 82 (238)
T ss_pred ceeceEE---------------EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEE
Confidence 5788888 99999999999999999999999999987652 222 22
Q ss_pred eCCCCCCCCCHHHHHHccccCCCCcccccHHHHHH---------HHHHhccCC--c--cccccccCcCCccCCCCccccC
Q 019592 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHGQ--A--VDIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 81 ~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---------~l~~l~~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 147 (338)
.++..+...+..++..+... . .....+.+ .+..+..+. . .....+|.++.+++..+.+.+.
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 83 SQEPVLFDGTIAENIRYGKP-----D-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred CCchhhhhhhHHHHhhccCC-----C-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 22221111122222111100 0 00111111 111111110 0 1223678888888777778889
Q ss_pred CCcEEEEeccccccchHHHhh
Q 019592 148 PSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~~ 168 (338)
+++++++|+|+.++|+..+..
T Consensus 157 ~p~llllDEP~~gLD~~~~~~ 177 (238)
T cd03249 157 NPKILLLDEATSALDAESEKL 177 (238)
T ss_pred CCCEEEEeCccccCCHHHHHH
Confidence 999999999999998765443
No 323
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.28 E-value=1.9e-12 Score=111.20 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=81.3
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEE-EeCC--------CCCCCCCH
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVL-VNQD--------SFYHNLTE 91 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~-l~~D--------~~~~~l~~ 91 (338)
.|+|||| +++++.+++|.|+||||||||++.|++.+++. |-.. +... .++..++.
T Consensus 2 vl~~vs~---------------~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv 66 (213)
T PRK15177 2 VLDKTDF---------------VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTG 66 (213)
T ss_pred eeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcH
Confidence 4789999 99999999999999999999999999987653 2222 2221 13344555
Q ss_pred HHHHHccccCCCCcccccHHHHHHHH-HHhccC--CccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 92 QELARVHEYNFDHPDAFDTEKLLSSM-EKLRHG--QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.++..+....++. +.....+.+ ...... .......+|.++.+++..+.+.+.+++++++|+|+...|+...
T Consensus 67 ~enl~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 67 EENARMMASLYGL----DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 5555432221221 111111111 111111 1223347888999988778888899999999999888776543
No 324
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2.1e-12 Score=125.32 Aligned_cols=147 Identities=13% Similarity=0.194 Sum_probs=92.8
Q ss_pred ccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CC---------------------
Q 019592 21 FHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QR--------------------- 76 (338)
Q Consensus 21 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~--------------------- 76 (338)
+.++|++++|+.. ..+.+.....++.+|.+++|+|+||||||||++.|++.+++ .|
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 339 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339 (506)
T ss_pred EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCC
Confidence 3456666666421 22344555558999999999999999999999999998762 22
Q ss_pred EEEEeCCC----CCCCCCHHHHHHcccc-CC-CC---cccccHHHHHHHHHHhccC-Cc--cccccccCcCCccCCCCcc
Q 019592 77 VVLVNQDS----FYHNLTEQELARVHEY-NF-DH---PDAFDTEKLLSSMEKLRHG-QA--VDIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 77 ~~~l~~D~----~~~~l~~~~~~~~~~~-~~-~~---~~~~~~~~l~~~l~~l~~~-~~--~~~~~~~~~~~~~~~~~~~ 144 (338)
+.++.++. ++..++..++..+... .+ .. ........+.+.++.+... .. .....+|.++.+++..+++
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~a 419 (506)
T PRK13549 340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKC 419 (506)
T ss_pred CEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHH
Confidence 23333331 2233444443322110 01 00 0111223455667776553 22 2345899999999888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++|+|||++++|+....
T Consensus 420 l~~~p~lllLDEPt~~LD~~~~~ 442 (506)
T PRK13549 420 LLLNPKILILDEPTRGIDVGAKY 442 (506)
T ss_pred HhhCCCEEEEcCCCCCcCHhHHH
Confidence 88999999999999999876443
No 325
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4.3e-12 Score=113.38 Aligned_cols=124 Identities=12% Similarity=-0.033 Sum_probs=74.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCE---------------------EEEeCCCCCCCCCHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRV---------------------VLVNQDSFYHNLTEQELAR 96 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~---------------------~~l~~D~~~~~l~~~~~~~ 96 (338)
+++++.+++|+|+||||||||++.|++.+.+ .|- .++.++......+..++..
T Consensus 43 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~ 122 (276)
T PRK14271 43 GFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVL 122 (276)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHH
Confidence 9999999999999999999999999998763 222 2333332111123333322
Q ss_pred ccccCCCC-cccccHHHHHHHHHHhccCCc------cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 97 VHEYNFDH-PDAFDTEKLLSSMEKLRHGQA------VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 97 ~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+....... +.........+.+..+..... .....+|.++.+++..+++.+.+++++|+|+|+.++|+....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~ 200 (276)
T PRK14271 123 AGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200 (276)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 21110100 000001122333444433211 122367888888887778888999999999999999876443
No 326
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=5.3e-12 Score=111.33 Aligned_cols=139 Identities=11% Similarity=0.031 Sum_probs=83.5
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh---CC---CCE----------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL---HD---QRV---------- 77 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l---~~---~~~---------- 77 (338)
.+.|++. .++++|| ++.+|.+++|.|+||||||||++.|++.. ++ .|-
T Consensus 10 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 10 NFWYGDFHALKGISM---------------EIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEECCEeEEeeeeE---------------EEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 3455443 4788888 99999999999999999999999999862 22 232
Q ss_pred ------------EEEeCCCCCCCCCHHHHHHccccCCCCc-ccccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 78 ------------VLVNQDSFYHNLTEQELARVHEYNFDHP-DAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 78 ------------~~l~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
.++.++......+..++..+........ .......+.+.++.+.... ......+|.++.++
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 2233332111123222222111000000 0111123344455443321 11233688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+..+++.+.+++++++|+|+.++|+..+..
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~ 184 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAK 184 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 888888889999999999999998765443
No 327
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.3e-12 Score=112.78 Aligned_cols=138 Identities=12% Similarity=-0.008 Sum_probs=83.3
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CC-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QR----------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~----~~----------- 76 (338)
.+.|++ ..++++|| ++.+|.+++|+|+||||||||++.|++... + .|
T Consensus 12 ~~~~~~~~~l~~~s~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 12 SVYYNKKKALNSVSL---------------DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred EEEECCeeeeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 455543 34788888 999999999999999999999999998732 2 22
Q ss_pred -----------EEEEeCCCCCCCCCHHHHHHccccCCCCc-ccccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 77 -----------VVLVNQDSFYHNLTEQELARVHEYNFDHP-DAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 77 -----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
+.++.++......+..++..+....+... .......+.+.++.+.... ......+|.++.++
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 23333332211233333332211111100 0011122333344433211 11233688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+.+.+.+++++|+|+|+.++|+....
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~ 185 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAG 185 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 87788888999999999999999876543
No 328
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5e-12 Score=117.69 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=112.0
Q ss_pred cccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------CE
Q 019592 18 FSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RV 77 (338)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------------~~ 77 (338)
-+.+.++||+|.|. +..+.+.....++++|.-+||+|+|||||||+.+.|.+.+... -+
T Consensus 349 ~~~I~F~dV~f~y~-~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG-PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeC-CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 35677899999775 5556777888899999999999999999999999999988753 25
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHH--------HHHHHHHhccCCc--c--ccccccCcCCccCCCCccc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEK--------LLSSMEKLRHGQA--V--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------l~~~l~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~ 145 (338)
.+++||...-+-+...+.. |++|..-+.+. +.+.+.++..|-. + .-..+|.+..|++..+++.
T Consensus 428 g~VPQd~~LFndTIl~NI~-----YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIK-----YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred eEeCCcccccchhHHHHhh-----cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 6666665543333333333 44454333222 1223333333211 1 1236888999998888888
Q ss_pred cCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 019592 146 VNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (338)
+++++++++|++++.+|. ..|..+-+.+.. ...+++...+.|....
T Consensus 503 lKda~Il~~DEaTS~LD~--------------~TE~~i~~~i~~--~~~~rTvI~IvH~l~l 548 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDS--------------ETEREILDMIMD--VMSGRTVIMIVHRLDL 548 (591)
T ss_pred hcCCCeEEecCcccccch--------------hhHHHHHHHHHH--hcCCCeEEEEEecchh
Confidence 999999999999998754 344444455544 4456666666655433
No 329
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.27 E-value=4.2e-12 Score=113.12 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=85.9
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CEEE-----
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVL----- 79 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------~~~~----- 79 (338)
.+.|++. .++++|| ++.+|.+++|+|+||||||||++.|++.+++. |-..
T Consensus 8 ~~~~~~~~il~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 8 HVARRHRAILRDLSL---------------RIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred EEEECCEeEEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEE
Confidence 4556544 4799999 99999999999999999999999999988652 3222
Q ss_pred ---------------EeCCC-CCCCCCHHHHHHccccCCC----CcccccHHHHHHHHHHhccCCcc--ccccccCcCCc
Q 019592 80 ---------------VNQDS-FYHNLTEQELARVHEYNFD----HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYK 137 (338)
Q Consensus 80 ---------------l~~D~-~~~~l~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~ 137 (338)
+.++. ++...+..++..+..+... .....+.+...+.++.+...... ....+|.++.+
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELA 152 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 23331 1122333333322111000 00011122344555555443322 23467888888
Q ss_pred cCCCCcccc---------CCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRV---------NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~---------~~~~vlIldg~~~~~d~~~~~ 167 (338)
++..+++.+ .+++++++|+|+.++|+....
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~ 191 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHH
Confidence 877777777 489999999999999876544
No 330
>PLN03211 ABC transporter G-25; Provisional
Probab=99.27 E-value=7.1e-12 Score=124.42 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=95.1
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------ 75 (338)
.+.|++. .|+|+|+ .+++|.+++|.||||||||||++.|++.+.+.
T Consensus 75 ~~~~~~~~iL~~vs~---------------~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~ 139 (659)
T PLN03211 75 TRQIQERTILNGVTG---------------MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139 (659)
T ss_pred cccCCCCeeeeCCEE---------------EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhc
Confidence 3456444 4799999 99999999999999999999999999987541
Q ss_pred -CEEEEeCCCC-CCCCCHHHHHHccccCCCCccc----ccHHHHHHHHHHhccCCc-------cccccccCcCCccCCCC
Q 019592 76 -RVVLVNQDSF-YHNLTEQELARVHEYNFDHPDA----FDTEKLLSSMEKLRHGQA-------VDIPNYDFKSYKNNVFP 142 (338)
Q Consensus 76 -~~~~l~~D~~-~~~l~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~l~~~~~-------~~~~~~~~~~~~~~~~~ 142 (338)
.+.++.+++. +..++..+...+.... ..+.. ...+...+.++.+...+. .....+|.++.+|+..+
T Consensus 140 ~~i~yv~Q~~~l~~~lTV~E~l~~~a~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 140 KRTGFVTQDDILYPHLTVRETLVFCSLL-RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred cceEEECcccccCCcCCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence 2456666643 3467777766543321 11111 112334556666555331 12346899999998888
Q ss_pred ccccCCCcEEEEeccccccchHH
Q 019592 143 ARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
...+.+++++++|||+.++|+..
T Consensus 219 ~aL~~~P~iLlLDEPtsgLD~~~ 241 (659)
T PLN03211 219 HEMLINPSLLILDEPTSGLDATA 241 (659)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHH
Confidence 88899999999999999999753
No 331
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=6e-12 Score=111.13 Aligned_cols=138 Identities=9% Similarity=-0.006 Sum_probs=82.5
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEE---------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVV--------- 78 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~--------- 78 (338)
.+.|++ ..++|+|| ++.+|.+++|+|+||||||||++.|++.+.+ .|-.
T Consensus 11 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 11 NIYYGDKQAVKNVNL---------------DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEECCEEeeccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 455544 34788888 9999999999999999999999999998753 1322
Q ss_pred -------------EEeCCC-CCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccC------CccccccccCcCCc
Q 019592 79 -------------LVNQDS-FYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHG------QAVDIPNYDFKSYK 137 (338)
Q Consensus 79 -------------~l~~D~-~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~------~~~~~~~~~~~~~~ 137 (338)
++.++. ++..++..++..+....... ......+.+.+.+..+... .......+|.++.+
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 233331 12223333332211110100 0000111122222222111 11233468888888
Q ss_pred cCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++..+++.+.+++++++|+|+.++|+....
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~ 185 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTA 185 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 887778888999999999999999876443
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.26 E-value=4.9e-12 Score=122.33 Aligned_cols=134 Identities=9% Similarity=0.054 Sum_probs=86.6
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHH
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQ 92 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~ 92 (338)
.+.|++. .|+++|| ++.+|.+++|+|+||||||||++.|++.+.+. |-..+...... .....
T Consensus 10 ~~~~~~~~il~~vsl---------------~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~-~~~~~ 73 (490)
T PRK10938 10 TFRLSDTKTLQLPSL---------------TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHIT-RLSFE 73 (490)
T ss_pred EEEcCCeeecccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccc-cCCHH
Confidence 4566443 4788888 99999999999999999999999999988753 33333222211 11111
Q ss_pred HHHHccccCCCCcc-----------------c-----ccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCC
Q 019592 93 ELARVHEYNFDHPD-----------------A-----FDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 93 ~~~~~~~~~~~~~~-----------------~-----~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
.......+.++.+. . .+...+.+.++.+..... .....+|.++.+++..+.+.+.+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 11111111121110 0 012234455666555432 23457999999998888888899
Q ss_pred CcEEEEeccccccchH
Q 019592 149 SDVILLEGILVFHDSR 164 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~ 164 (338)
++++++|||++++|+.
T Consensus 154 p~lllLDEPt~~LD~~ 169 (490)
T PRK10938 154 PDLLILDEPFDGLDVA 169 (490)
T ss_pred CCEEEEcCCcccCCHH
Confidence 9999999999999985
No 333
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.26 E-value=4.4e-12 Score=120.21 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=82.4
Q ss_pred chhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC-------C-CCCCCCCHHHHHHccccCCCCcccc
Q 019592 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ-------D-SFYHNLTEQELARVHEYNFDHPDAF 108 (338)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~-------D-~~~~~l~~~~~~~~~~~~~~~~~~~ 108 (338)
+.....++.+|.+++|+|+||||||||+++|++.+.+. |-..++. . .+...++..++..+....+......
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e 119 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEK 119 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHH
Confidence 33344499999999999999999999999999998753 3222221 1 2233445555443322111111111
Q ss_pred cHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 109 DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 109 ~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
....+.+.++.+...... ....+|.++.+++..+++.+.+++++++|+|+.++|+..+
T Consensus 120 ~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 120 IKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred HHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 112233445554443322 3347888999998888888899999999999999998643
No 334
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=5.7e-12 Score=111.70 Aligned_cols=138 Identities=13% Similarity=0.006 Sum_probs=82.1
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEE-------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV------- 80 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l------- 80 (338)
.+.|++ ..++++|| ++.+|.+++|.|+||||||||++.|++.+++ .|-..+
T Consensus 14 ~~~~~~~~il~~isl---------------~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 14 SFYYNTSKAIEGISM---------------DIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred EEEECCeEeecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 344543 34678888 9999999999999999999999999998763 232333
Q ss_pred ---------------eCCCCCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 81 ---------------NQDSFYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 81 ---------------~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
.++......+..++..+....... +.........+.+..+.... ......+|.++.++
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred cccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 222111112332222211100000 10001122233444333211 11234688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+.+.+.+++++++|+|+.++|+....
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~ 187 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATM 187 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 87788888999999999999999876443
No 335
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.26 E-value=2.3e-12 Score=118.15 Aligned_cols=171 Identities=15% Similarity=0.213 Sum_probs=108.6
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------- 75 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------- 75 (338)
..+-+++.++||+|.| ++..|+++....+.++|..+++.||||+||||+++.|-+.+...
T Consensus 532 ~~~~G~i~fsnvtF~Y-~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAY-DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred cccCCeEEEEEeEEec-CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 5556888899999988 55678899998999999999999999999999999999988631
Q ss_pred --CEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHH--------HHHHHhccCCcccc----ccccCcCCccCCC
Q 019592 76 --RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL--------SSMEKLRHGQAVDI----PNYDFKSYKNNVF 141 (338)
Q Consensus 76 --~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--------~~l~~l~~~~~~~~----~~~~~~~~~~~~~ 141 (338)
.+.+++||...-+-+.- .+.-|..|.+-|.+... +.+-.+..|-...+ -.+|++.++|+..
T Consensus 611 Rs~IGVVPQDtvLFNdTI~-----yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTIL-----YNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHhcCcccCcceeecceee-----eheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHH
Confidence 23344444322111111 11224445544432211 11222222211111 1578899999888
Q ss_pred CccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (338)
++..++.|.++++|+.++.+ |++.|-.++-.+.|- -.+++..-+.+....
T Consensus 686 ARtiLK~P~iIlLDEATSAL--------------DT~tER~IQaaL~rl--ca~RTtIVvAHRLST 735 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSAL--------------DTNTERAIQAALARL--CANRTTIVVAHRLST 735 (790)
T ss_pred HHHHhcCCcEEEEcchhhhc--------------CCccHHHHHHHHHHH--hcCCceEEEeeeehh
Confidence 88889999999999999887 455555555555552 234444444444333
No 336
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=2.9e-12 Score=108.32 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=72.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C-CCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHh
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D-QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKL 120 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~-~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 120 (338)
++.++.+++|+|+||||||||++.|++.+. + .+-..++..+.. ........+.++.+..+....+.+.+...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KNFQRSTGYVEQQDVHSPNLTVREALRFS 103 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HHhhhceEEecccCccccCCcHHHHHHHH
Confidence 999999999999999999999999998642 2 333333332211 11112223334443322211222222210
Q ss_pred ccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 121 RHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.. . ..+|.++.+++..+++.+.+++++++|+|+.++|+....
T Consensus 104 ~~---~--~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~ 145 (192)
T cd03232 104 AL---L--RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145 (192)
T ss_pred HH---H--hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHH
Confidence 00 0 168888888888888888999999999999999876543
No 337
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.26 E-value=7.1e-12 Score=118.39 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=88.6
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHH---HHHc
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQE---LARV 97 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~---~~~~ 97 (338)
.++|||| .+.+|.++||+|.|||||||+++.|++++.|. |...+...++- ++..+ ....
T Consensus 306 Av~~VSf---------------~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~--~~~~~~~~~r~~ 368 (539)
T COG1123 306 AVDDVSF---------------DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD--LTGGELRRLRRR 368 (539)
T ss_pred eeeeeee---------------EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc--cccchhhhhhhh
Confidence 3788888 99999999999999999999999999999873 33444443321 22111 1112
Q ss_pred cccCCCCccc-------------------------ccHHHHHHHHHHhccCCcc---ccccccCcCCccCCCCccccCCC
Q 019592 98 HEYNFDHPDA-------------------------FDTEKLLSSMEKLRHGQAV---DIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 98 ~~~~~~~~~~-------------------------~~~~~l~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
..+.|++|.. ...+.+.+.++....+... +...+|.++.+|...+++....|
T Consensus 369 ~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P 448 (539)
T COG1123 369 IQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEP 448 (539)
T ss_pred eEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCC
Confidence 2334444431 1112344556666665432 33379999999998888899999
Q ss_pred cEEEEeccccccchHHH
Q 019592 150 DVILLEGILVFHDSRVR 166 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~ 166 (338)
+++|+|+|++.+|+...
T Consensus 449 ~lli~DEp~SaLDvsvq 465 (539)
T COG1123 449 KLLILDEPVSALDVSVQ 465 (539)
T ss_pred CEEEecCCccccCHHHH
Confidence 99999999999987643
No 338
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.26 E-value=3.1e-12 Score=108.92 Aligned_cols=129 Identities=17% Similarity=0.137 Sum_probs=82.9
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEEEEeCCCCCCCCCH
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQDSFYHNLTE 91 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l--~~-~~~~~l~~D~~~~~l~~ 91 (338)
+.|++ ..++|+|| ++.+|.+++|.|+||||||||++.|++.. .+ .|-..++..+.. ....
T Consensus 8 ~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~-~~~~ 71 (200)
T cd03217 8 VSVGGKEILKGVNL---------------TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT-DLPP 71 (200)
T ss_pred EEeCCEEeeeccce---------------EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC-cCCH
Confidence 44544 34788888 99999999999999999999999999984 33 344444443321 1121
Q ss_pred HHHH-HccccCCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 92 QELA-RVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 92 ~~~~-~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.... ....+.++.+..+......+.+... ...+|.++.+++..+.+.+.+++++++|+|+.++|+....
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~-------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 141 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFLRYV-------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALR 141 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHHhhc-------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 1111 1123334443322222222333111 1258888888888888888999999999999999876443
No 339
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.26 E-value=3.4e-12 Score=125.84 Aligned_cols=141 Identities=12% Similarity=0.127 Sum_probs=96.5
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEE
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVV 78 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~ 78 (338)
.+.++|++|+|++. .+........+++|..++|+|+|||||||+++.|++.+++. .+.
T Consensus 334 ~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 334 AVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred eEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 47789999999753 34577777789999999999999999999999999988762 234
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHH---------HHHhccCCc--c--ccccccCcCCccCCCCccc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQA--V--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------l~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~ 145 (338)
++++|.+.-..+..++..++. |+ ...+.+.+. +..+..+-+ + ....+|.|+.+|+..+++.
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~-----~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGR-----EG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred EEccCCccCcccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 566665554445555444322 21 112222222 222222211 1 1235788888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++|+|||++.+|+...+
T Consensus 487 l~~p~ililDEpts~LD~~~~~ 508 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEA 508 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHH
Confidence 9999999999999999876443
No 340
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=7.1e-12 Score=110.72 Aligned_cols=138 Identities=9% Similarity=-0.017 Sum_probs=82.8
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CC-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR----------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~----------- 76 (338)
.+.|++ ..|+|+|| ++++|.+++|.|+||||||||++.|++.+++ .|
T Consensus 13 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 13 NLWYGEKHALYDITI---------------SIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred EEEECCeeeeeeeEE---------------EECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 455543 34788888 9999999999999999999999999987541 12
Q ss_pred -----------EEEEeCCCCCCCCCHHHHHHccccCCCCccccc-HHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 77 -----------VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFD-TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 77 -----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
+.++.++......+..++..+....++...... ...+.+.++.+.... ......+|.++.++
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred cccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 223333321111233333222211111000000 112233344333211 11233678888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+++.+.+++++++|+|+.++|+....
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~ 186 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATA 186 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 87778888999999999999999876544
No 341
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.25 E-value=6.1e-12 Score=123.32 Aligned_cols=148 Identities=9% Similarity=0.125 Sum_probs=97.8
Q ss_pred ccccccCccccccCCC---CCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH
Q 019592 19 SGFHMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL 94 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~ 94 (338)
+.+.++||+|+|++.. .+.+.....++++|..++|+|+|||||||+++.|++.+.|. |-..++..+ ....+..+.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~-i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAA-VSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-CCCCCHHHH
Confidence 4577899999998642 35677788899999999999999999999999999988763 333343322 122222222
Q ss_pred HHccccCCCCcc------------cccHHHHHHHHHHhccCCccc--------cccccCcCCccCCCCccccCCCcEEEE
Q 019592 95 ARVHEYNFDHPD------------AFDTEKLLSSMEKLRHGQAVD--------IPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 95 ~~~~~~~~~~~~------------~~~~~~l~~~l~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
.....+.++++. ....+.+.+.++.......+. ...+|.++.+|+..+++.+.+++++|+
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 221122111111 122334445555544433221 135788888888888888999999999
Q ss_pred eccccccchHHHh
Q 019592 155 EGILVFHDSRVRE 167 (338)
Q Consensus 155 dg~~~~~d~~~~~ 167 (338)
|||++.+|+...+
T Consensus 495 DE~ts~LD~~~~~ 507 (555)
T TIGR01194 495 DEWAADQDPAFKR 507 (555)
T ss_pred eCCccCCCHHHHH
Confidence 9999999876543
No 342
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.25 E-value=7.7e-12 Score=121.54 Aligned_cols=123 Identities=11% Similarity=0.124 Sum_probs=81.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------------CEEEEeCC----CCCCCCCHHHHHHc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------------RVVLVNQD----SFYHNLTEQELARV 97 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------------~~~~l~~D----~~~~~l~~~~~~~~ 97 (338)
++.+|.+++|+|+||||||||+++|++.+++. ++.++.++ .++..++..++..+
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 89999999999999999999999999987641 13344443 13334444444332
Q ss_pred cccC----C----CC-cccccHHHHHHHHHHhccC-Cc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 98 HEYN----F----DH-PDAFDTEKLLSSMEKLRHG-QA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 98 ~~~~----~----~~-~~~~~~~~l~~~l~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
.... + .. ....+...+.+.++.+... .. .....+|.++.+++..+.+.+.+++++|+|||++++|+..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 444 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH
Confidence 2110 0 00 0011123345667666553 22 2345799999999888888889999999999999998764
Q ss_pred H
Q 019592 166 R 166 (338)
Q Consensus 166 ~ 166 (338)
.
T Consensus 445 ~ 445 (510)
T PRK09700 445 K 445 (510)
T ss_pred H
Confidence 4
No 343
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.5e-12 Score=112.65 Aligned_cols=123 Identities=11% Similarity=-0.057 Sum_probs=71.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEE----------------------eCCCCCCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV----------------------NQDSFYHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l----------------------~~D~~~~~l~~~~~~ 95 (338)
++.+|.+++|+|+||||||||++.|++.+++ .|-..+ .++..+...+..++.
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl 121 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENI 121 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHH
Confidence 9999999999999999999999999987642 232233 222111111222221
Q ss_pred HccccCCCCcccccHHHHHHHHHHhccC----C--ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+......... .....+.+.++.+... . ......+|.++.+++..+++.+.+++++|+|+|+.++|+....
T Consensus 122 ~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 122 AFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 11110000000 0011122223322211 1 1122357888888888888888999999999999999876543
No 344
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6e-12 Score=113.08 Aligned_cols=128 Identities=11% Similarity=-0.002 Sum_probs=75.2
Q ss_pred hhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CCCEE----------------------EEeCCCCCCCCCH
Q 019592 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVV----------------------LVNQDSFYHNLTE 91 (338)
Q Consensus 40 ~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~------~~~~~----------------------~l~~D~~~~~l~~ 91 (338)
....++..|.+++|+|+||||||||++.|++... ..|-. ++.++......+.
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 136 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSI 136 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCH
Confidence 3333899999999999999999999999999643 12222 2222211111122
Q ss_pred HHHHHccccCCCCc-ccccHHHHHHHHHHhccC----C--ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 92 QELARVHEYNFDHP-DAFDTEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
.++..+....+... .....+.+.+.++.+... . ......+|.++.+++..+++.+.+++++|+|+|+.++|+.
T Consensus 137 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~ 216 (286)
T PRK14275 137 FDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPK 216 (286)
T ss_pred HHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 23222211111100 000112233344443321 1 1123468888888888888888999999999999999876
Q ss_pred HHh
Q 019592 165 VRE 167 (338)
Q Consensus 165 ~~~ 167 (338)
...
T Consensus 217 ~~~ 219 (286)
T PRK14275 217 ATA 219 (286)
T ss_pred HHH
Confidence 443
No 345
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.25 E-value=5.1e-12 Score=98.73 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=84.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----------------------CCEEEEeCCCCC-CCCCHHHHHHcccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------------QRVVLVNQDSFY-HNLTEQELARVHEY 100 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------------~~~~~l~~D~~~-~~l~~~~~~~~~~~ 100 (338)
++.++.|+.|.|||||||||+...+.+.+.+ +.+.++.+|++. ..++..++..
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~---- 99 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLL---- 99 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceE----
Confidence 8999999999999999999999999998764 346677777654 4444444322
Q ss_pred CCCCcc----cccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhc
Q 019592 101 NFDHPD----AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 101 ~~~~~~----~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~ 169 (338)
|..|. .-........|.+....... ....++.+...|+...+..+..++.+++|+||+-+|..++..+
T Consensus 100 -fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qf 173 (213)
T COG4136 100 -FALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173 (213)
T ss_pred -EecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHH
Confidence 22222 22233344556665554433 2236788888887666777899999999999998888776554
No 346
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=8.6e-12 Score=110.07 Aligned_cols=138 Identities=9% Similarity=-0.005 Sum_probs=81.8
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------CEEEEeC-----
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------RVVLVNQ----- 82 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------~~~~l~~----- 82 (338)
.+.|++. .++++|| ++.+|.+++|.|+||||||||++.|++.+.+. |-..++.
T Consensus 11 ~~~~~~~~il~~~s~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 11 NFFYHKHQVLKNINM---------------DFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred EEEECCeeEecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc
Confidence 3445443 4688888 99999999999999999999999999988653 3333322
Q ss_pred -----------------CCCCCCCCHHHHHHccccCCCCcc-cccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 83 -----------------DSFYHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 83 -----------------D~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
+......+..++..+......... ......+.+.+..+.... ......+|.++.++
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred cccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 211111122222221111010000 000112222333332210 11233678888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+++.+.+++++|+|+|+.++|+....
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~ 184 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTM 184 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 87778888999999999999999876543
No 347
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=7.1e-12 Score=110.57 Aligned_cols=136 Identities=9% Similarity=-0.051 Sum_probs=82.5
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CC------------
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QR------------ 76 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~----~~------------ 76 (338)
+.|++. .+++++| ++.+|.+++|+|+||||||||++.|++... + .|
T Consensus 13 ~~~~~~~~l~~is~---------------~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 77 (251)
T PRK14244 13 LWYGSKQILFDINL---------------DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77 (251)
T ss_pred EEECCeeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhc
Confidence 444443 4688888 999999999999999999999999999864 1 22
Q ss_pred ----------EEEEeCCCCCCCCCHHHHHHccccCCCCc-c-cccHHHHHHHHHHhccCC----c--cccccccCcCCcc
Q 019592 77 ----------VVLVNQDSFYHNLTEQELARVHEYNFDHP-D-AFDTEKLLSSMEKLRHGQ----A--VDIPNYDFKSYKN 138 (338)
Q Consensus 77 ----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~l~~~l~~l~~~~----~--~~~~~~~~~~~~~ 138 (338)
+.++.++......+..++..+.....+.+ . ......+.+.++.+.... . .....+|.++.++
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred ccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 23333332111113333222211111100 0 001122334455544322 1 1234688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHH
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+..+.+.+.+++++++|+|+.++|+..+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~ 185 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVAT 185 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 8777888899999999999999987643
No 348
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.9e-12 Score=124.82 Aligned_cols=122 Identities=10% Similarity=0.045 Sum_probs=76.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe----------------------------------CCC---C
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN----------------------------------QDS---F 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~----------------------------------~D~---~ 85 (338)
++..|.++||+|+||||||||+++|++.+.+. |...+. ++. +
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l 117 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSL 117 (623)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhc
Confidence 99999999999999999999999999998752 222222 111 1
Q ss_pred CCCCCHHHHHHccccCC-CCcccccHHHHHHHHHHhccCC-----ccccccccCcCCccCCCCccccCCCcEEEEecccc
Q 019592 86 YHNLTEQELARVHEYNF-DHPDAFDTEKLLSSMEKLRHGQ-----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (338)
Q Consensus 86 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~ 159 (338)
+..++..++..+..... ..+..-....+.+.+..+.... ......+|.++.+|+..+.+.+.+++++|+|||++
T Consensus 118 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~ 197 (623)
T PRK10261 118 NPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTT 197 (623)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 11122222211110000 0000001123445566655532 12334799999999988888899999999999999
Q ss_pred ccchHH
Q 019592 160 FHDSRV 165 (338)
Q Consensus 160 ~~d~~~ 165 (338)
.+|+..
T Consensus 198 ~LD~~~ 203 (623)
T PRK10261 198 ALDVTI 203 (623)
T ss_pred ccCHHH
Confidence 999853
No 349
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6.2e-12 Score=121.90 Aligned_cols=136 Identities=14% Similarity=0.139 Sum_probs=90.3
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
..+.|++. .++|+|| ++.+|.+++|+|+||||||||++.|++.+++. |
T Consensus 10 l~~~~~~~~il~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 10 IGKTFPGVKALDDISF---------------DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEECCEEEEeeeeE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH
Confidence 34566553 4789999 99999999999999999999999999987641 2
Q ss_pred ------EEEEeCCC-CCCCCCHHHHHHcccc--CCCC-cccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCcc
Q 019592 77 ------VVLVNQDS-FYHNLTEQELARVHEY--NFDH-PDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 77 ------~~~l~~D~-~~~~l~~~~~~~~~~~--~~~~-~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 144 (338)
+.++.++. ++..++..++..+... .+.. +.......+.+.++.+..... .....+|.++.+++..+.+
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 33344432 2233444444333211 0110 011112345566666655432 2334788899999888888
Q ss_pred ccCCCcEEEEeccccccchH
Q 019592 145 RVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~ 164 (338)
.+.+++++|+|||++++|+.
T Consensus 155 l~~~p~lllLDEPt~~LD~~ 174 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAR 174 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHH
Confidence 88999999999999999985
No 350
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.25 E-value=6.6e-12 Score=110.94 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=84.5
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC-C---CCC
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-F---YHN 88 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~-~---~~~ 88 (338)
.+.|++ ..++|+|| ++.+|.+++|.|+||||||||+++|++.+++. |-..++..+ . ...
T Consensus 10 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 10 SKSYGGGKGCRDVSF---------------DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred EEEeCCceEeecceE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccccccccccc
Confidence 344543 34788888 99999999999999999999999999987652 323332211 0 000
Q ss_pred CCHHHHH----HccccCCCCcc-------------------------cccHHHHHHHHHHhccCC-cc--ccccccCcCC
Q 019592 89 LTEQELA----RVHEYNFDHPD-------------------------AFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSY 136 (338)
Q Consensus 89 l~~~~~~----~~~~~~~~~~~-------------------------~~~~~~l~~~l~~l~~~~-~~--~~~~~~~~~~ 136 (338)
....+.. ....+.++.+. ......+.+.++.+.... .. ....+|.++.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1111100 00111111110 001123345555555432 11 3346888888
Q ss_pred ccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 137 KNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 137 ~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+++..+.+.+.+++++++|+|+.++|+....
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~ 185 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 185 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 8888888888999999999999999876543
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.25 E-value=1.7e-12 Score=139.79 Aligned_cols=166 Identities=11% Similarity=0.142 Sum_probs=115.4
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~ 77 (338)
+.+.++||+|+|++..++.+.....++++|..|||+|++||||||+++.|.+.+.+ ..+
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 56889999999988777889999999999999999999999999999999998875 246
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhc---------cCCcccc----ccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~---------~~~~~~~----~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-.-+..++... |+ .+..+.+.+.++... .|-+..+ ..+|.|+.+++..+++
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp----~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARA 1435 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDP----FS---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1435 (1522)
T ss_pred eEECCCCcccCccHHHHcCc----cc---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHH
Confidence 77788877655555555432 11 123333444443322 2222111 2477788888878888
Q ss_pred ccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (338)
.+.+++++|+||+++.+|... +..+++.+++. ..+++...+.|....
T Consensus 1436 LLr~~~ILiLDEaTSalD~~T--------------e~~Iq~~l~~~--~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1436 LLRKTKILVLDEATAAVDLET--------------DNLIQSTIRTQ--FEDCTVLTIAHRLNT 1482 (1522)
T ss_pred HHcCCCEEEEECCcccCCHHH--------------HHHHHHHHHHH--cCCCEEEEEecCHHH
Confidence 889999999999999986653 33444555432 234566666665433
No 352
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.25 E-value=3.3e-11 Score=104.19 Aligned_cols=182 Identities=21% Similarity=0.296 Sum_probs=96.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC---
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--- 124 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--- 124 (338)
+.+|+|.|++||||||+++.|++.++ +.+++.+.+|+.+..... ..+... .+...+.+.+..+....
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~---~~~~~~~~~~r~~~~~~~--~~g~~~-----~~~~~~~~~~~~~~~~~~~~ 73 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG---FHYLDTGAMYRAVALAAL--RHGVDL-----EDEEALVALAAHLDISFESD 73 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CCcccCchhHHHHHHHHH--HcCCCC-----CCHHHHHHHHhcCCeEEecC
Confidence 58999999999999999999999886 788888887754221111 011111 11111222111111000
Q ss_pred ----cc------------------------ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEe
Q 019592 125 ----AV------------------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD 176 (338)
Q Consensus 125 ----~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~ 176 (338)
.+ ..|..+..... ....+....-+|++|-..+. . +.+..+++|||+
T Consensus 74 ~~~~~~~~~~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~----~q~~ia~~~~~Vi~GR~~~~-~-vl~~a~~~ifl~ 147 (225)
T PRK00023 74 PGGQRVFLNGEDVTDEIRTEEVGNAASKVAAIPEVREALVE----RQRAFAREPGLVMDGRDIGT-V-VFPDAELKIFLT 147 (225)
T ss_pred CCcceEEECCcchHHhhChHHHHHHHHHHcCCHHHHHHHHH----HHHHHhhCCCEEEEecChhe-E-EeCCCCEEEEEE
Confidence 00 00000000000 00011223458889976442 2 334478999999
Q ss_pred cCHHHHHHHHHhhCccc-cCCCHHHHHHHHhhcCcchhhhhccCcCcccc-EEecCCCCcHHHHHHHHHHHHHH
Q 019592 177 TDADVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 177 ~~~~~~~~R~~~R~~~~-~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
+|.+.+.+|+.++.... .+.+.+..........+.....++.|....+| ++|+++.. .++++++.|.+.
T Consensus 148 a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l---~~ee~v~~I~~~ 218 (225)
T PRK00023 148 ASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGL---SIEEVVEKILAL 218 (225)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCC---CHHHHHHHHHHH
Confidence 99999988887663221 23344555555555444444556777667676 67765543 344444444443
No 353
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6.1e-12 Score=124.72 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=92.3
Q ss_pred ccccCccccccCC---------CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q 019592 21 FHMDGLEVRNKET---------GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------- 75 (338)
Q Consensus 21 ~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------- 75 (338)
..++||+++|+.. ....+.....++.+|.+++|+|+||||||||++.|++.+++.
T Consensus 314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~ 393 (623)
T PRK10261 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP 393 (623)
T ss_pred EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH
Confidence 3456666666421 112344455589999999999999999999999999987641
Q ss_pred --------CEEEEeCCC---CCCCCCHHHHHHccccCCCC-cccccHHHHHHHHHHhccCC---ccccccccCcCCccCC
Q 019592 76 --------RVVLVNQDS---FYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNV 140 (338)
Q Consensus 76 --------~~~~l~~D~---~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~ 140 (338)
++.++.++. ++..++..++.......... ........+.+.++.+.... ......+|.++.+++.
T Consensus 394 ~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~ 473 (623)
T PRK10261 394 GKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRIC 473 (623)
T ss_pred HHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH
Confidence 134444443 22333443332211100110 00111234455666665531 1233479999999988
Q ss_pred CCccccCCCcEEEEeccccccchHHHh
Q 019592 141 FPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 141 ~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+.+.+++++|+|||++.+|+....
T Consensus 474 iAraL~~~p~llllDEPts~LD~~~~~ 500 (623)
T PRK10261 474 IARALALNPKVIIADEAVSALDVSIRG 500 (623)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 888888999999999999999876544
No 354
>PTZ00243 ABC transporter; Provisional
Probab=99.24 E-value=3e-12 Score=137.77 Aligned_cols=141 Identities=14% Similarity=0.206 Sum_probs=103.3
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~ 77 (338)
+.+.++||+|+|++..++.+.....++++|..|||+|++|||||||++.|.+.+.+ ..+
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 46889999999988777789999999999999999999999999999999998875 246
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC---------cccc----ccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---------AVDI----PNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---------~~~~----~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+.-.-+..++... ++ .++.+.+.+.++.....+ +..+ ..+|.|+.+++..+++
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp----~~---~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDP----FL---EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred eEECCCCccccccHHHHhCc----cc---CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 77777776655566555432 11 233344445444432221 1111 2577788888777788
Q ss_pred ccCC-CcEEEEeccccccchHHH
Q 019592 145 RVNP-SDVILLEGILVFHDSRVR 166 (338)
Q Consensus 145 ~~~~-~~vlIldg~~~~~d~~~~ 166 (338)
.+.+ ++++|+||+++.+|+...
T Consensus 1460 LL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1460 LLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred HhcCCCCEEEEeCCCccCCHHHH
Confidence 8875 899999999999876643
No 355
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.24 E-value=8e-12 Score=122.47 Aligned_cols=141 Identities=13% Similarity=0.030 Sum_probs=93.4
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCCC--CCCCCC
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQDS--FYHNLT 90 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~D~--~~~~l~ 90 (338)
+++|+++|... +.+.....++.+|.+++|+|+||||||||++.|++.+.+. .+.++.++. ++..++
T Consensus 327 ~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 327 AENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 404 (556)
T ss_pred EEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCC
Confidence 45555554321 2333344489999999999999999999999999987642 245667663 455667
Q ss_pred HHHHHHccccCCCCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..++..+........ .........+..+.... ......+|.++.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 405 v~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 482 (556)
T PRK11819 405 VWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLR 482 (556)
T ss_pred HHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 666654332111111 11122345566665532 2234578999999988888888999999999999999876543
No 356
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=6.9e-12 Score=114.51 Aligned_cols=149 Identities=10% Similarity=-0.014 Sum_probs=95.6
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------C------------------
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------Q------------------ 75 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~------------------ 75 (338)
-+.++|++++|.....+.+.....++++|.++||+|++|||||||+++|.+.... .
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 4567899998875445677777789999999999999999999999999987641 1
Q ss_pred ----CEEEEeCCCCCCCCCHHHHHHccccCCCCc-ccccHHHHHHHHHHhccCC----c--cccccccCcCCccCCCCcc
Q 019592 76 ----RVVLVNQDSFYHNLTEQELARVHEYNFDHP-DAFDTEKLLSSMEKLRHGQ----A--VDIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 76 ----~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~----~--~~~~~~~~~~~~~~~~~~~ 144 (338)
++.++.++.+.-..+..++..++....... .........+.++...... . -....+|.++.+++..+++
T Consensus 160 ~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred hhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 244555554443444444443321100000 0000111233344333211 1 1224688888888888888
Q ss_pred ccCCCcEEEEeccccccchHHHhh
Q 019592 145 RVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
.+.+++++++|+|+.++|+.....
T Consensus 240 l~~~p~IlLLDEPts~LD~~~~~~ 263 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDPIATAK 263 (329)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHH
Confidence 889999999999999998765443
No 357
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=4.4e-12 Score=116.15 Aligned_cols=131 Identities=8% Similarity=0.099 Sum_probs=84.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----CC--------------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QR-------------------- 76 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-----~~-------------------- 76 (338)
.|+|||| ++.+|.+++|+|+||||||||+++|++.+.+ .|
T Consensus 22 ~l~~vsl---------------~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (330)
T PRK15093 22 AVDRVSM---------------TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKL 86 (330)
T ss_pred EEeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHH
Confidence 5799999 9999999999999999999999999998752 12
Q ss_pred ----EEEEeCCCC---CCCCCHHHHHHcc--ccCCC----CcccccHHHHHHHHHHhccCCc-----cccccccCcCCcc
Q 019592 77 ----VVLVNQDSF---YHNLTEQELARVH--EYNFD----HPDAFDTEKLLSSMEKLRHGQA-----VDIPNYDFKSYKN 138 (338)
Q Consensus 77 ----~~~l~~D~~---~~~l~~~~~~~~~--~~~~~----~~~~~~~~~l~~~l~~l~~~~~-----~~~~~~~~~~~~~ 138 (338)
+.++.++.. ...++..+..... ...+. .........+.+.++.+..... ...-.+|.++.+|
T Consensus 87 ~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QR 166 (330)
T PRK15093 87 VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQK 166 (330)
T ss_pred hCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 333444321 1112222211100 00000 0000112344556666655431 1223789999999
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+.+.+.+++++|+|+|+..+|+....
T Consensus 167 v~iArAL~~~P~llilDEPts~LD~~~~~ 195 (330)
T PRK15093 167 VMIAIALANQPRLLIADEPTNAMEPTTQA 195 (330)
T ss_pred HHHHHHHHCCCCEEEEeCCCCcCCHHHHH
Confidence 88888889999999999999999876544
No 358
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=9e-12 Score=111.20 Aligned_cols=127 Identities=11% Similarity=-0.092 Sum_probs=74.5
Q ss_pred hhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEE----------------------eCCCCCCCCCHH
Q 019592 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV----------------------NQDSFYHNLTEQ 92 (338)
Q Consensus 41 ~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l----------------------~~D~~~~~l~~~ 92 (338)
....+.+|.+++|.|+||||||||+++|++.+.+ .|-..+ .++......+..
T Consensus 44 vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 123 (272)
T PRK14236 44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIY 123 (272)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHH
Confidence 3338999999999999999999999999998752 232222 222111111222
Q ss_pred HHHHccccCCCC-cccccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 93 ELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 93 ~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
++..+....+.. ........+.+.++.+.... ......+|.++.+++..+++.+.+++++|+|+|+.++|+..
T Consensus 124 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~ 203 (272)
T PRK14236 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203 (272)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 222211100100 00001122333343333221 11224678888888877888889999999999999998765
Q ss_pred Hh
Q 019592 166 RE 167 (338)
Q Consensus 166 ~~ 167 (338)
..
T Consensus 204 ~~ 205 (272)
T PRK14236 204 TL 205 (272)
T ss_pred HH
Confidence 44
No 359
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.24 E-value=8e-12 Score=122.44 Aligned_cols=143 Identities=14% Similarity=0.051 Sum_probs=96.0
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCCC--CCCC
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQDS--FYHN 88 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~D~--~~~~ 88 (338)
+.++|++++|.+. +.+......+..|.+++|.|+||||||||+++|++.+.+. .+.++.++. ++..
T Consensus 323 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~ 400 (552)
T TIGR03719 323 IEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 400 (552)
T ss_pred EEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCC
Confidence 3356666655431 2344444589999999999999999999999999987652 256677763 4555
Q ss_pred CCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 89 LTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
++..+...+....+.... ......+.+..+.... ......+|.++.+++..+.+.+.+++++|+|+|++++|+..
T Consensus 401 ~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 401 KTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred CcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 666666544321111111 1122345666665432 22345799999999888888889999999999999998764
Q ss_pred Hh
Q 019592 166 RE 167 (338)
Q Consensus 166 ~~ 167 (338)
..
T Consensus 479 ~~ 480 (552)
T TIGR03719 479 LR 480 (552)
T ss_pred HH
Confidence 43
No 360
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=9.1e-12 Score=110.15 Aligned_cols=139 Identities=10% Similarity=0.039 Sum_probs=86.3
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------C--------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------R-------- 76 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------~-------- 76 (338)
+..++|++.. ++|+|| .+.++.+++|.|+||||||||++.|++.+.+. +
T Consensus 15 ~~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 15 RLYLYINDKAILKDITI---------------KIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred eEEEecCCceeEeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcc
Confidence 3355665544 788888 99999999999999999999999999987642 1
Q ss_pred ------------EEEEeCCC-CCCCCCHHHHHHccccCCC-CcccccHHHHHHHHHHhccCC------ccccccccCcCC
Q 019592 77 ------------VVLVNQDS-FYHNLTEQELARVHEYNFD-HPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSY 136 (338)
Q Consensus 77 ------------~~~l~~D~-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~ 136 (338)
+.++.++. ++..++..++..+...... .+.......+.+.++.+.... ......+|.++.
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQ 159 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHH
Confidence 22333332 2223344433332211000 001111123344555544421 112235777888
Q ss_pred ccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 137 KNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 137 ~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+++..+++.+.+++++++|+|+.++|+...
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~ 189 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNS 189 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 887777888899999999999999987643
No 361
>PRK07261 topology modulation protein; Provisional
Probab=99.24 E-value=2.1e-11 Score=101.01 Aligned_cols=105 Identities=17% Similarity=0.288 Sum_probs=70.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 129 (338)
.|+|+|++||||||+++.|++.++ +.+++.|.++... .+. ..+.+.+...+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~~-----------~~~---~~~~~~~~~~~~~~--------- 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQP-----------NWQ---ERDDDDMIADISNF--------- 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEecc-----------ccc---cCCHHHHHHHHHHH---------
Confidence 589999999999999999999875 5677777654210 011 11122222222211
Q ss_pred cccCcCCccCCCCccccCCCcEEEEeccccc-cchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCC
Q 019592 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVF-HDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (338)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~-~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 197 (338)
+.+.. .|+||.+.. ..+.....+|.+||+++|...++.|+++|....+|..
T Consensus 56 ----------------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~ 107 (171)
T PRK07261 56 ----------------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKT 107 (171)
T ss_pred ----------------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCc
Confidence 12233 789998864 3245556899999999999999999999976545543
No 362
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=7.8e-12 Score=111.50 Aligned_cols=145 Identities=12% Similarity=-0.006 Sum_probs=82.2
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----C-CCE-----------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH-----D-QRV----------------- 77 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~-----~-~~~----------------- 77 (338)
+.+++++++|.+ .+.+.....++.+|.+++|+|+||||||||++.|++.+. + .|-
T Consensus 25 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 25 FDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 344555555542 123344444899999999999999999999999999875 1 222
Q ss_pred -----EEEeCCCCCCCCCHHHHHHccccCCCCccc-ccHHHHHHHHHHhccC----C--ccccccccCcCCccCCCCccc
Q 019592 78 -----VLVNQDSFYHNLTEQELARVHEYNFDHPDA-FDTEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 78 -----~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~----~--~~~~~~~~~~~~~~~~~~~~~ 145 (338)
.++.++..+...+..++..+.....+.... .....+.+.+..+... . ......+|.++.+++..+.+.
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 233333211112333322221110110000 0011122223222110 0 112336888888888888888
Q ss_pred cCCCcEEEEeccccccchHHHh
Q 019592 146 VNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++++|+|+|+.++|+....
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~ 204 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTL 204 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHH
Confidence 8999999999999999876544
No 363
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1e-11 Score=121.13 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=95.4
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCCC---CCC
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQDS---FYH 87 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~D~---~~~ 87 (338)
+.++||+++|.+ .+.......++.+|.+++|.|+||||||||+++|++.+.+. .+.++.++. ++.
T Consensus 320 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 397 (530)
T PRK15064 320 LEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFEN 397 (530)
T ss_pred EEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCC
Confidence 345666666643 22344455589999999999999999999999999987652 245666653 333
Q ss_pred CCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC-C--ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 88 NLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
.++..++... +... ..+...+.+.+..+... . ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 398 ~~t~~~~~~~----~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 398 DLTLFDWMSQ----WRQE-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred CCcHHHHHHH----hccC-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 4555554321 1111 12234456667776542 2 2244578999999988888888999999999999999876
Q ss_pred HHh
Q 019592 165 VRE 167 (338)
Q Consensus 165 ~~~ 167 (338)
...
T Consensus 473 ~~~ 475 (530)
T PRK15064 473 SIE 475 (530)
T ss_pred HHH
Confidence 443
No 364
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.23 E-value=1.1e-11 Score=101.08 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=94.6
Q ss_pred hcCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCC
Q 019592 12 ASSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNL 89 (338)
Q Consensus 12 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l 89 (338)
....++|+||. |+++|| .+..|.+-+|+|||||||||++..+.+.-+|. +-.++..+.-...+
T Consensus 9 ~~vsVsF~GF~Aln~ls~---------------~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 9 DGVSVSFGGFKALNDLSF---------------SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred eceEEEEcceeeeeeeEE---------------EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC
Confidence 44578999988 899999 99999999999999999999999999988775 44555553222233
Q ss_pred CHHHHHHcc-ccCCCCcc------------------------------cccHHHHHHHHHHhccCCcc--ccccccCcCC
Q 019592 90 TEQELARVH-EYNFDHPD------------------------------AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSY 136 (338)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~------------------------------~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~ 136 (338)
+..+....+ ..-|+.|. .-...++.+.|..+..+... .-..+|++..
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 333332211 11133222 11233556666666665543 3347899999
Q ss_pred ccCCCCccccCCCcEEEEecccccc
Q 019592 137 KNNVFPARRVNPSDVILLEGILVFH 161 (338)
Q Consensus 137 ~~~~~~~~~~~~~~vlIldg~~~~~ 161 (338)
+++......+..|+++++|+|.++.
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGM 178 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGM 178 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCC
Confidence 9988777788999999999999985
No 365
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.1e-11 Score=109.53 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=81.9
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CC-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QR----------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~----~~----------- 76 (338)
.+.|++ ..++++|| ++.+|.+++|+|+||||||||++.|++..+ + .|
T Consensus 12 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 12 HLFYGKFEALKGIDL---------------DFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred EEEECCeeEEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 445543 34678887 999999999999999999999999998753 1 12
Q ss_pred -----------EEEEeCCCCCCCCCHHHHHHccccCCCCcc-cccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 77 -----------VVLVNQDSFYHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 77 -----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
+.++.++......+..++..+.....+... ......+.+.++.+.... ......+|.++.++
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 233333321111233333222111111000 000112233333332211 11224688888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+.+.+.+++++++|+|+.++|+....
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~ 185 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISST 185 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 88788888999999999999999876443
No 366
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.4e-11 Score=109.45 Aligned_cols=123 Identities=9% Similarity=-0.084 Sum_probs=70.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCC----------------------CCCCCHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSF----------------------YHNLTEQELA 95 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l~~D~~----------------------~~~l~~~~~~ 95 (338)
++++|.+++|.|+||||||||++.|++.+++ .|-..++..+. ....+..++.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl 111 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNI 111 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHH
Confidence 9999999999999999999999999987641 23333322111 1001222211
Q ss_pred HccccCCCCcccccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+......... ...+...+.+..+.... ......+|.++.+++..+++.+.+++++|+|+|+.++|+....
T Consensus 112 ~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 112 AYGARINGYKG-DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred HhhhhhcCcch-HHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 11100000000 00111222233222110 1122357888888887788888999999999999999876443
No 367
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.22 E-value=1.9e-11 Score=105.87 Aligned_cols=124 Identities=13% Similarity=0.133 Sum_probs=81.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------CEEEEeCCCCC---CCCCHHHHHHcccc----
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------RVVLVNQDSFY---HNLTEQELARVHEY---- 100 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------~~~~l~~D~~~---~~l~~~~~~~~~~~---- 100 (338)
++.+|.+++|.|+||||||||++.|++.+.+. .+.++.++..+ ...+..++......
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 45789999999999999999999999987642 24555555322 12334443322211
Q ss_pred CCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+..+...+...+.+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~ 150 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQE 150 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 01111112234455666666554322 33468889999888888888999999999999999876544
No 368
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.22 E-value=9.3e-12 Score=110.19 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=80.8
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE--------------------
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV-------------------- 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~-------------------- 77 (338)
+.+.+++++++|+....+.......+++++.+++|+|+||||||||++.|++.+.+. |-
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 344456666655432233444455589999999999999999999999999987642 22
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHH---------HHhccCCc--c--ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQA--V--DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l---------~~l~~~~~--~--~~~~~~~~~~~~~~~~~~ 144 (338)
.++.++..+...+..++.. .. .......+.+.+ ..+..+-. . ....++.++.+++..+++
T Consensus 98 ~~v~q~~~l~~~tv~~nl~-----~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 98 SIILQDPILFSGSIRFNLD-----PE--CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred EEECCCCcccccHHHHhcC-----cC--CCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 2223322111111111100 00 001111112221 11110100 0 123577778888777788
Q ss_pred ccCCCcEEEEeccccccchHHH
Q 019592 145 RVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.+++++|+|+|+.++|+...
T Consensus 171 l~~~p~llllDEPt~gLD~~~~ 192 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATE 192 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHH
Confidence 8899999999999999987644
No 369
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=5.4e-12 Score=110.30 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=77.1
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLV 80 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l 80 (338)
.+++++| ++.+|.+++|.|+||||||||++.|++.+++. | +.++
T Consensus 16 ~l~~i~~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 16 VLKDVSF---------------TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred eeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 5788888 99999999999999999999999999988652 2 2233
Q ss_pred eCCCCCCCCCHHHHHHccccCCCCcccccH----HHHHHHHHHhccCC--cc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQ--AV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 81 ~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
.++..+.+.+..++..+...... ...... ..+.+.+..+..+- .. ....+|.++.+++..+.+.+.+++++
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDAT-DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCC-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 33322222223222222111000 000000 00111112221110 01 12367888888887788888999999
Q ss_pred EEeccccccchHHH
Q 019592 153 LLEGILVFHDSRVR 166 (338)
Q Consensus 153 Ildg~~~~~d~~~~ 166 (338)
++|+|+.++|+...
T Consensus 160 llDEP~~~LD~~~~ 173 (236)
T cd03253 160 LLDEATSALDTHTE 173 (236)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999987644
No 370
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.22 E-value=1.3e-10 Score=97.48 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=87.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
.++.+|.|+||||||||||++.|.+.++. + .....---+.....+. .-..|.|-. .+.+.+ .+..+..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~--~-~~~v~~TTR~~r~gE~-~G~dY~fvs-----~~~F~~---~i~~~~f 69 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPD--F-LFSISCTTRAPRPGDE-EGKTYFFLT-----IEEFKK---GIADGEF 69 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCc--c-ccccCccCCCCCCCCC-CCceeEeCC-----HHHHHH---HHHcCCe
Confidence 36889999999999999999999886542 1 1111100011000000 001222322 222222 2333444
Q ss_pred cccccccC---cCCccCCCCccccCCCcEEEEeccccccchHHHhhc-C--eEEEEecC-HHHHHHHHHhhCccccCCCH
Q 019592 126 VDIPNYDF---KSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM-N--MKIFVDTD-ADVRLARRIRRDTVEKGRDI 198 (338)
Q Consensus 126 ~~~~~~~~---~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~-d--~~i~l~~~-~~~~~~R~~~R~~~~~~~~~ 198 (338)
+.+-.+.. |+... .....+..++++|+|.-..+. ..++..+ + ..|||.+| .+.+.+|+.+|+..... .+
T Consensus 70 ~e~~~~~g~~YGt~~~--~i~~~~~~g~~~i~d~~~~g~-~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e-~i 145 (186)
T PRK14737 70 LEWAEVHDNYYGTPKA--FIEDAFKEGRSAIMDIDVQGA-KIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEE-SI 145 (186)
T ss_pred EEEEEECCeeecCcHH--HHHHHHHcCCeEEEEcCHHHH-HHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHH-HH
Confidence 43333322 22221 111234667888888755554 3344444 3 68999985 57788888888643222 23
Q ss_pred HHHHH-HHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHH
Q 019592 199 ATVLD-QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQH 244 (338)
Q Consensus 199 ~~~~~-~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~ 244 (338)
...+. +..+.. ....+|+||.|+ +.+.+..++.+.
T Consensus 146 ~~Rl~~~~~e~~----------~~~~~D~vI~N~-dle~a~~ql~~i 181 (186)
T PRK14737 146 EKRIENGIIELD----------EANEFDYKIIND-DLEDAIADLEAI 181 (186)
T ss_pred HHHHHHHHHHHh----------hhccCCEEEECc-CHHHHHHHHHHH
Confidence 33222 222211 257899999888 444444444433
No 371
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.22 E-value=1.2e-11 Score=106.71 Aligned_cols=123 Identities=11% Similarity=0.132 Sum_probs=76.7
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEE----------------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV---------------------- 78 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-~~~~---------------------- 78 (338)
.++++|| +++++.+++|.|+||||||||++.|++.+.+ .|-.
T Consensus 16 il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 16 TLSNINI---------------RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred ceeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 4688888 9999999999999999999999999998754 2222
Q ss_pred --EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-------------ccccccccCcCCccCCCCc
Q 019592 79 --LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-------------AVDIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 79 --~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-------------~~~~~~~~~~~~~~~~~~~ 143 (338)
++.++..+...+..++..+.. .++.....+.+..+.... ......+|.++.+++..+.
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGS-------PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcC-------cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 233332111222222222111 011111222222221110 0123468888888887788
Q ss_pred cccCCCcEEEEeccccccchHHH
Q 019592 144 RRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+.+.+++++|+|+|+.++|+...
T Consensus 154 al~~~p~illlDEPt~~LD~~~~ 176 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLS 176 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHH
Confidence 88899999999999999987643
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.3e-12 Score=101.99 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=88.8
Q ss_pred ccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE-EEEeCCC-----------
Q 019592 18 FSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV-VLVNQDS----------- 84 (338)
Q Consensus 18 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~-~~l~~D~----------- 84 (338)
-++.+ +.+++| ....+..+-|.|+||||||||+++|++++.|..- +.+....
T Consensus 12 R~e~~lf~~L~f---------------~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~ 76 (209)
T COG4133 12 RGERTLFSDLSF---------------TLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76 (209)
T ss_pred cCcceeecceeE---------------EEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHH
Confidence 34444 699999 9999999999999999999999999999987432 2222111
Q ss_pred ---------CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccc--cccCcCCccCCCCccccCCCcEEE
Q 019592 85 ---------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP--NYDFKSYKNNVFPARRVNPSDVIL 153 (338)
Q Consensus 85 ---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlI 153 (338)
.-..++..|+..+....++. .+...+.+.+..+......+.| .+|.++.+|+..++..+.+.++.|
T Consensus 77 l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWi 153 (209)
T COG4133 77 LLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWI 153 (209)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCcee
Confidence 11233334444333322221 2334556677777766544445 567777777777777789999999
Q ss_pred EeccccccchHHH
Q 019592 154 LEGILVFHDSRVR 166 (338)
Q Consensus 154 ldg~~~~~d~~~~ 166 (338)
+|||+..+|+.-.
T Consensus 154 LDEP~taLDk~g~ 166 (209)
T COG4133 154 LDEPFTALDKEGV 166 (209)
T ss_pred ecCcccccCHHHH
Confidence 9999999887543
No 373
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.22 E-value=1.1e-11 Score=120.95 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=92.9
Q ss_pred ccccCccccccC---------CCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC---------------
Q 019592 21 FHMDGLEVRNKE---------TGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--------------- 76 (338)
Q Consensus 21 ~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--------------- 76 (338)
+.++|++++|+. ...+.+.....++.+|.+++|+|+||||||||++.|++.++..|
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~ 355 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRR 355 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchh
Confidence 345666666641 01233444555899999999999999999999999999874322
Q ss_pred --------EEEEeCCC---CCCCCCHHHHHHccccCCC--CcccccHHHHHHHHHHhccCC---ccccccccCcCCccCC
Q 019592 77 --------VVLVNQDS---FYHNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNV 140 (338)
Q Consensus 77 --------~~~l~~D~---~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~ 140 (338)
+.++.++. ++..++..++..+....+. .+..-....+.+.+..+.... ......+|.++.+++.
T Consensus 356 ~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 435 (529)
T PRK15134 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIA 435 (529)
T ss_pred hHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHH
Confidence 33444442 3333444444332211010 011111234455666665531 1233478999999988
Q ss_pred CCccccCCCcEEEEeccccccchHHHh
Q 019592 141 FPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 141 ~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+.+.+++++|+|||+.++|+....
T Consensus 436 la~al~~~p~llllDEPt~~LD~~~~~ 462 (529)
T PRK15134 436 IARALILKPSLIILDEPTSSLDKTVQA 462 (529)
T ss_pred HHHHHhCCCCEEEeeCCccccCHHHHH
Confidence 888888999999999999999886543
No 374
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.21 E-value=7.4e-13 Score=105.65 Aligned_cols=121 Identities=16% Similarity=0.219 Sum_probs=77.2
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHccccC
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYN 101 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~~~ 101 (338)
|+||+| +++++.+++|+|+||||||||++.|++.+.+. +...++..++.. ...........+.
T Consensus 1 L~~v~~---------------~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~~~ 64 (137)
T PF00005_consen 1 LKNVSL---------------EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD-IDIEELRRRIGYV 64 (137)
T ss_dssp EEEEEE---------------EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT-SHHHHHHHTEEEE
T ss_pred CCceEE---------------EEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc-ccccccccccccc
Confidence 578889 99999999999999999999999999987642 233343333222 1122222222222
Q ss_pred CCCccc---------ccHHHHHHHHHHhccCC--cccc----ccccCcCCccCCCCccccCCCcEEEEecccc
Q 019592 102 FDHPDA---------FDTEKLLSSMEKLRHGQ--AVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (338)
Q Consensus 102 ~~~~~~---------~~~~~l~~~l~~l~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~ 159 (338)
+..+.- .......+.+..+.... .... ..+|.++.+++..+.+.+.+++++|+|+|++
T Consensus 65 ~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 65 PQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 222111 12234445555555433 1222 5678888888777778889999999999974
No 375
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.21 E-value=1.4e-11 Score=122.62 Aligned_cols=141 Identities=12% Similarity=0.131 Sum_probs=93.8
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCC--CCCCCC
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQD--SFYHNL 89 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~D--~~~~~l 89 (338)
.++||+++|.+. +........+.+|.++||+|+||||||||+++|++.+.|. .+.++.++ .++..+
T Consensus 321 ~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~ 398 (635)
T PRK11147 321 EMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEK 398 (635)
T ss_pred EEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCC
Confidence 356666666431 2344445589999999999999999999999999987652 24566664 244555
Q ss_pred CHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-c--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 90 TEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-A--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+..+........+.. .. ....+.+.+..+.... . .....+|.++.+++..+...+.+++++|+|+|+.++|+...
T Consensus 399 tv~e~l~~~~~~~~~-~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~ 476 (635)
T PRK11147 399 TVMDNLAEGKQEVMV-NG-RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476 (635)
T ss_pred CHHHHHHhhcccccc-cc-hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 666654432111110 00 1234556666655432 1 23457899999998888888899999999999999997543
No 376
>PRK13946 shikimate kinase; Provisional
Probab=99.21 E-value=1.6e-10 Score=97.04 Aligned_cols=163 Identities=18% Similarity=0.260 Sum_probs=86.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 126 (338)
.+..|+++|.+||||||+++.|++.++ +.+++.|.............+.. .++. ..+ ...-.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg---~~~id~D~~~~~~~g~~~~e~~~-~~ge-~~~-~~~e~~~l~~------- 75 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG---LPFLDADTEIERAARMTIAEIFA-AYGE-PEF-RDLERRVIAR------- 75 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC---CCeECcCHHHHHHhCCCHHHHHH-HHCH-HHH-HHHHHHHHHH-------
Confidence 345799999999999999999999986 77888885321110000000000 0000 000 0000111111
Q ss_pred ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh---hcCeEEEEecCHHHHHHHHHhhCccc--cCCCH-HH
Q 019592 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTVE--KGRDI-AT 200 (338)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~---~~d~~i~l~~~~~~~~~R~~~R~~~~--~~~~~-~~ 200 (338)
.......+|..|...+..+..+. ..++.|||++|.+++.+|+..|.... .+... +.
T Consensus 76 ------------------l~~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~ 137 (184)
T PRK13946 76 ------------------LLKGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKET 137 (184)
T ss_pred ------------------HHhcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHH
Confidence 11233456666654444554333 34689999999999999998876432 11222 22
Q ss_pred HHHHHhhcCcchhhhhccCcCccccEEecCCCCcH-HHHHHHHHHHHHHh
Q 019592 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIRTKL 249 (338)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~~~~i~~~l 249 (338)
+...+..+ .|.| ..+|++|+.+..+. ..++.+++.+.+.+
T Consensus 138 i~~~~~~R-~~~y--------~~~dl~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 138 LARLMEER-YPVY--------AEADLTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred HHHHHHHH-HHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 23333332 2222 34799886554333 44555555555443
No 377
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.21 E-value=1.6e-11 Score=119.27 Aligned_cols=124 Identities=12% Similarity=0.076 Sum_probs=79.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------------EEEEeCC----CCCCCCCHHHHHHc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------------VVLVNQD----SFYHNLTEQELARV 97 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------------~~~l~~D----~~~~~l~~~~~~~~ 97 (338)
++.+|.+++|.|+||||||||++.|++.+++. | +.++.++ .++..++..++...
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHh
Confidence 89999999999999999999999999987642 2 2233332 12222333222211
Q ss_pred cc---cCCCCcccccHHHHHHHHHHhccC-Cc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 98 HE---YNFDHPDAFDTEKLLSSMEKLRHG-QA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 98 ~~---~~~~~~~~~~~~~l~~~l~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.. ..+.....-....+.+.+..+... .. .....+|.++.+++..+++.+.+++++|+|||+.++|+....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~ 440 (510)
T PRK15439 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440 (510)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHH
Confidence 00 000000011122345666666553 22 234579999999988888888999999999999999876443
No 378
>PRK04040 adenylate kinase; Provisional
Probab=99.21 E-value=8.3e-11 Score=98.73 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=85.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccc
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 127 (338)
+.+|+|+|.+||||||+++.|++.++ .++.+++.++++.... ...+ . .. +.+.+. .+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~~~~~a----~~~g-~-~~-----~~d~~r----~l~~~~~-- 63 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDVMLEVA----KEEG-L-VE-----HRDEMR----KLPPEEQ-- 63 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchHHHHHH----HHcC-C-CC-----CHHHHh----hCChhhh--
Confidence 67899999999999999999999984 2467777776542110 0000 0 00 000000 0000000
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEecccc---------ccchHHHh--hcCeEEEEecCHHHHHHHHHhhCccccCC
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILV---------FHDSRVRE--LMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~---------~~d~~~~~--~~d~~i~l~~~~~~~~~R~~~R~~~~~~~ 196 (338)
..+.. ..............+|+|+-+. ++.....+ ..|.+|+++++++..++|+++.....++.
T Consensus 64 -~~~~~----~a~~~i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~ 138 (188)
T PRK04040 64 -KELQR----EAAERIAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDV 138 (188)
T ss_pred -HHHHH----HHHHHHHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCC
Confidence 00000 0000001112344577777543 11222222 34789999999999999998521122222
Q ss_pred CHHHHHHHHhhcCcchhhhhccCcCccccEEecCCC-CcHHHHHHHHHH
Q 019592 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGG-DNHVAIDLIVQH 244 (338)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~-~~~~~~~~~~~~ 244 (338)
........+... ...|..++.......+++|.|+. ..+.+++++++.
T Consensus 139 es~e~I~~~~~~-a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~i 186 (188)
T PRK04040 139 ETEEDIEEHQEM-NRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEV 186 (188)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 223333333332 23344444444566888888772 133445554443
No 379
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.21 E-value=3.1e-11 Score=120.20 Aligned_cols=186 Identities=17% Similarity=0.160 Sum_probs=112.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ- 124 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~- 124 (338)
++..+|.|.||+||||||+++.|++.++ +.+++.+.+|+.+...-... ...+ .+.+.+.+.+..+...-
T Consensus 440 ~~~~~i~i~g~~~~gks~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~ 509 (661)
T PRK11860 440 DRVPVICIDGPTASGKGTVAARVAEALG---YHYLDSGALYRLTALAALRA--GVAL-----DDEAAIAALARGLPVRFE 509 (661)
T ss_pred cCcceEEeeCCCCCCHHHHHHHHHHHhC---CeEecHHHhhhHHHHHHHHc--CcCC-----CCHHHHHHHHhcCCeeec
Confidence 3456899999999999999999999987 88899999986543221111 1111 12222222222211100
Q ss_pred ---------cc-----------------ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecC
Q 019592 125 ---------AV-----------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTD 178 (338)
Q Consensus 125 ---------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~ 178 (338)
++ ..|..+..+... ++. +....-+|+||--.+. .+.+..|++|||+++
T Consensus 510 ~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~---qr~-~~~~~~~v~eGRdigt--vv~p~a~~kifl~a~ 583 (661)
T PRK11860 510 GDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLAL---QRS-FRRLPGLVADGRDMGT--VIFPDAALKVFLTAS 583 (661)
T ss_pred CCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHH---HHH-HhhCCCEEEECCCCcc--EECCCCCeEEEEECC
Confidence 00 111111111111 111 1223358999977763 445667899999999
Q ss_pred HHHHHHHHHhhCcc-ccCCCHHHHHHHHhhcCcchhhhhccCcCccccE-EecCCCCcHHHHHHHHHHHHHHhc
Q 019592 179 ADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI-IIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 179 ~~~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~-iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
.++|.+|+.+.... ..+.+.+.+..+...+...+..+++.|.+.-.|. +|+++. .+++++++.|.+.+.
T Consensus 584 ~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~---~~~~~v~~~i~~~i~ 654 (661)
T PRK11860 584 AEARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSD---LTIEQAVAQVLDWWQ 654 (661)
T ss_pred hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCC---CCHHHHHHHHHHHHH
Confidence 99999999874221 1234678888888777777788889998777775 444443 355666666665553
No 380
>PRK00625 shikimate kinase; Provisional
Probab=99.21 E-value=1.4e-10 Score=95.87 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=76.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC-------CHHHHHHccccCCCCcccccHHHHH-HHHHHhc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL-------TEQELARVHEYNFDHPDAFDTEKLL-SSMEKLR 121 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~ 121 (338)
.|.|+|.+||||||+++.|++.++ +.+++.|.+.... +..+. |...+.-.+...+ +.+..+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~~~g~~~~~~i~ei-------f~~~Ge~~fr~~E~~~l~~l- 70 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVSNYHGALYSSPKEI-------YQAYGEEGFCREEFLALTSL- 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHHHhCCCCCCCHHHH-------HHHHCHHHHHHHHHHHHHHh-
Confidence 489999999999999999999886 7888888654211 11111 0000000000000 111111
Q ss_pred cCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhc---CeEEEEecCHHHHHHHHHhhCccccCCCH
Q 019592 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (338)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~---d~~i~l~~~~~~~~~R~~~R~~~~~~~~~ 198 (338)
...+.+|..|-....++...+.+ ..+||+++|.++..+|+..|.........
T Consensus 71 -------------------------~~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~ 125 (173)
T PRK00625 71 -------------------------PVIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHA 125 (173)
T ss_pred -------------------------ccCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcH
Confidence 11233444443333345444433 57999999999999999988654332223
Q ss_pred HHHHHHHhhcCcchhhhhccCcCccccEEecCC
Q 019592 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG 231 (338)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~ 231 (338)
+.+.+.|.. ..|.| .+.||++|+.+
T Consensus 126 ~~~~~ll~~-R~~~Y-------~~~ad~~i~~~ 150 (173)
T PRK00625 126 PSLEEILSQ-RIDRM-------RSIADYIFSLD 150 (173)
T ss_pred HHHHHHHHH-HHHHH-------HHHCCEEEeCC
Confidence 333333333 22333 46799988654
No 381
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.21 E-value=5.1e-12 Score=104.84 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=63.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC-EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhcc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR-VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH 122 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~-~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 122 (338)
.++++.+++|.|+||||||||++.|++.+.+.. -..+.... ..+.++.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------------i~~~~q~~----------------- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------------PVYKPQYI----------------- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------------EEEEcccC-----------------
Confidence 789999999999999999999999999887532 22222110 01111110
Q ss_pred CCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+|.++.+++..+++.+.+++++++|||+..+|+....
T Consensus 71 -------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 71 -------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 16778888877777888899999999999999876443
No 382
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.21 E-value=8.4e-12 Score=111.51 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=79.9
Q ss_pred cchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------EEEEeCCCCCCCCCHHHHHHccccCCCCcccc
Q 019592 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------VVLVNQDSFYHNLTEQELARVHEYNFDHPDAF 108 (338)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~ 108 (338)
.+.....++++|.+++|+|+||||||||++.|++.+++. | +.++.++.+....+..++..+... +. ..
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~-~~---~~ 127 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVS-YD---EY 127 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccc-cC---HH
Confidence 334444489999999999999999999999999988752 2 567777755433344444332211 10 00
Q ss_pred cHHH------HHHHHHHhccCCc--c--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 109 DTEK------LLSSMEKLRHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 109 ~~~~------l~~~l~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.... +.+.+..+..+.. + ....+|.++.+++..+++.+.+++++|+|+|+.++|+....
T Consensus 128 ~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~ 196 (282)
T cd03291 128 RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEK 196 (282)
T ss_pred HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 0011 1111211111110 0 12367888888887778888999999999999999876443
No 383
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.21 E-value=1.5e-11 Score=119.23 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=81.6
Q ss_pred hhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEE---------------------eCCC----CCCCCCHH
Q 019592 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLV---------------------NQDS----FYHNLTEQ 92 (338)
Q Consensus 40 ~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l---------------------~~D~----~~~~l~~~ 92 (338)
....++.+|.+++|+|+||||||||++.|++.++| .|-..+ .++. ++..++..
T Consensus 278 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~ 357 (500)
T TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVG 357 (500)
T ss_pred cceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHH
Confidence 33348999999999999999999999999998863 232332 2221 22233333
Q ss_pred HHHHccccC-CC----CcccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 93 ELARVHEYN-FD----HPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 93 ~~~~~~~~~-~~----~~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
++..+.... +. .........+.+.++.+.... ......+|.++.+++..+++.+.+++++++|||++++|+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~ 437 (500)
T TIGR02633 358 KNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437 (500)
T ss_pred HHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHh
Confidence 332221100 00 000111234556677766532 2234478999999988888888999999999999999876
Q ss_pred HH
Q 019592 165 VR 166 (338)
Q Consensus 165 ~~ 166 (338)
..
T Consensus 438 ~~ 439 (500)
T TIGR02633 438 AK 439 (500)
T ss_pred HH
Confidence 43
No 384
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.20 E-value=1.2e-11 Score=133.57 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=100.2
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------CEEE
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RVVL 79 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------------~~~~ 79 (338)
.+.++||+.+|.....+.+......+.+|.+++|.|+|||||||++++|++.+.|. .+.+
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 34456666666432233445555589999999999999999999999999998651 2345
Q ss_pred EeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEec
Q 019592 80 VNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (338)
Q Consensus 80 l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg 156 (338)
+.++. ++..++..+...+.....+.+.....+.+.+.++.+...+.. ....+|.|+.+++..+.+.+.+++++++||
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 55543 445566666655433222222212233455667766654432 345799999999988888899999999999
Q ss_pred cccccchHHH
Q 019592 157 ILVFHDSRVR 166 (338)
Q Consensus 157 ~~~~~d~~~~ 166 (338)
|++++|+..+
T Consensus 1088 PTSGLDp~sr 1097 (2272)
T TIGR01257 1088 PTSGVDPYSR 1097 (2272)
T ss_pred CCcCCCHHHH
Confidence 9999998533
No 385
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.1e-11 Score=120.03 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=80.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE---------------------EEeCCC----CCCCCCHHHHHHc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV---------------------LVNQDS----FYHNLTEQELARV 97 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~---------------------~l~~D~----~~~~l~~~~~~~~ 97 (338)
++.+|.+++|+|+||||||||++.|++.+++. |-. ++.++. ++..++..++..+
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 89999999999999999999999999987642 222 233321 2333444443322
Q ss_pred cccCCCC------cccccHHHHHHHHHHhccC-Cc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 98 HEYNFDH------PDAFDTEKLLSSMEKLRHG-QA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 98 ~~~~~~~------~~~~~~~~l~~~l~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+...... +.....+...+.+..+... .. .....+|.++.+++..+.+.+.+++++|+|||+.++|+....
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 433 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKH 433 (501)
T ss_pred ccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHH
Confidence 1110000 0111123455667766652 22 234478999999988888888999999999999999876443
No 386
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.20 E-value=1.4e-11 Score=119.40 Aligned_cols=124 Identities=13% Similarity=0.170 Sum_probs=82.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------------CEEEEeCCC----CCCCCCHHHHHHc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------------RVVLVNQDS----FYHNLTEQELARV 97 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------------~~~~l~~D~----~~~~l~~~~~~~~ 97 (338)
++.+|.+++|+|+||||||||++.|++.+.+. ++.+++++. ++..++..++..+
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 353 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence 99999999999999999999999999987642 134444442 2333444444332
Q ss_pred cccC-CCC-----cccccHHHHHHHHHHhccC-C--ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 98 HEYN-FDH-----PDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 98 ~~~~-~~~-----~~~~~~~~l~~~l~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.... +.. ........+.+.+..+... . ......+|.++.+++..+.+.+.+++++|+|||++++|+....
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~ 432 (501)
T PRK10762 354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKK 432 (501)
T ss_pred hhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHH
Confidence 1110 000 0011123455667766553 2 2234579999999988888888999999999999999876543
No 387
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.6e-11 Score=101.44 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=86.4
Q ss_pred Cccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC-EEE-------------
Q 019592 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR-VVL------------- 79 (338)
Q Consensus 15 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~-~~~------------- 79 (338)
..+..|.. ++++|| ....|.+.+|.|||||||||+++.|.+.+.|.. -..
T Consensus 8 s~~~~Gr~ll~~vsl---------------~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 8 SYSLAGRRLLDGVSL---------------DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred EEEeecceeccCcce---------------eccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHH
Confidence 34444444 699999 999999999999999999999999999988532 222
Q ss_pred -------EeCCC-CCCCCCHHHHHHccccCCCCccc--ccHHHHHHHHHHhccCC--ccccccccCcCCccCCCCccc--
Q 019592 80 -------VNQDS-FYHNLTEQELARVHEYNFDHPDA--FDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARR-- 145 (338)
Q Consensus 80 -------l~~D~-~~~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~-- 145 (338)
+.++. .-..++..+...++...+..+.. -+.....+.+....... .-.+..+|.+..+|+..++..
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 22221 11223444445555554433222 33334555565544332 236678999998887443322
Q ss_pred ----cCCCcEEEEeccccccchH
Q 019592 146 ----VNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 146 ----~~~~~vlIldg~~~~~d~~ 164 (338)
...++++++|+|++.+|..
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~ 175 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIA 175 (259)
T ss_pred ccCCCCCCceEEecCCccccchH
Confidence 2345699999999988753
No 388
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.5e-11 Score=120.09 Aligned_cols=135 Identities=12% Similarity=0.123 Sum_probs=90.1
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCC
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQD 83 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------~~~l~~D 83 (338)
.+.|++. .++++|| ++.+|.+++|+|+||||||||++.|++.+++. | +.++.++
T Consensus 8 s~~~~~~~il~~vsl---------------~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~ 72 (530)
T PRK15064 8 TMQFGAKPLFENISV---------------KFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQD 72 (530)
T ss_pred EEEeCCcEeEeCCEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecc
Confidence 4566544 5799999 99999999999999999999999999988652 2 3455554
Q ss_pred C-CCCCCCHHHHHHccc-----------cCCCCcc--------------------ccc-HHHHHHHHHHhccCCc---cc
Q 019592 84 S-FYHNLTEQELARVHE-----------YNFDHPD--------------------AFD-TEKLLSSMEKLRHGQA---VD 127 (338)
Q Consensus 84 ~-~~~~l~~~~~~~~~~-----------~~~~~~~--------------------~~~-~~~l~~~l~~l~~~~~---~~ 127 (338)
. ++..++..++..+.. ..+..+. .++ ...+.+.+..+..... ..
T Consensus 73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 2 334445444332110 0000000 001 1234456666655332 13
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
...+|.++.+++..+.+.+.+++++++|||++++|+.
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~ 189 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHH
Confidence 3578999999988888888999999999999999985
No 389
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.1e-11 Score=110.45 Aligned_cols=144 Identities=12% Similarity=0.035 Sum_probs=83.0
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CC-------------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR------------------- 76 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~------------------- 76 (338)
.++||+++|.+ .+-+.....++.+|.+++|+|+||||||||++.|++.+.+ .|
T Consensus 47 ~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 47 SVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred EEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 34555554432 1233333348999999999999999999999999998741 22
Q ss_pred ---EEEEeCCCCCCCCCHHHHHHccccCC------------CCc-ccccHHHHHHHHHHhccCC------ccccccccCc
Q 019592 77 ---VVLVNQDSFYHNLTEQELARVHEYNF------------DHP-DAFDTEKLLSSMEKLRHGQ------AVDIPNYDFK 134 (338)
Q Consensus 77 ---~~~l~~D~~~~~l~~~~~~~~~~~~~------------~~~-~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~ 134 (338)
+.++.++......+..++..+..... ... .......+.+.+..+.... ......+|.+
T Consensus 125 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 125 RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 23333332211123333322211000 000 0011122334444443211 1123468888
Q ss_pred CCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 135 SYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 135 ~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+++..+.+.+.+++++|+|+|+.++|+....
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~ 237 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATS 237 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 888888888888999999999999999876443
No 390
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.1e-11 Score=109.31 Aligned_cols=150 Identities=11% Similarity=0.179 Sum_probs=94.4
Q ss_pred cccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE-EEEeCCCCCCCCCHHHHHH
Q 019592 18 FSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV-VLVNQDSFYHNLTEQELAR 96 (338)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~-~~l~~D~~~~~l~~~~~~~ 96 (338)
..++.++|+.|.|++.. .+..-...++++|.++.|+|.|||||||+++.|.+++.|..- ..++... ...-+.++...
T Consensus 320 ~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p-V~~e~ledYR~ 397 (546)
T COG4615 320 WKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP-VSAEQLEDYRK 397 (546)
T ss_pred ccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc-CCCCCHHHHHH
Confidence 35666778888777665 333334447899999999999999999999999999988543 3333322 22222333322
Q ss_pred ccccCCCC---------ccc-ccHHHHHHHHHHhccCCcc-------ccccccCcCCccCCCCccccCCCcEEEEecccc
Q 019592 97 VHEYNFDH---------PDA-FDTEKLLSSMEKLRHGQAV-------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (338)
Q Consensus 97 ~~~~~~~~---------~~~-~~~~~l~~~l~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~ 159 (338)
+....|.+ ++. -..+.....|++++..... ..-.+|.++++|+..-.+.+...+++++|+|.+
T Consensus 398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAA 477 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhc
Confidence 22111211 222 2334555666666554332 222455666666544455668899999999999
Q ss_pred ccchHHHhhc
Q 019592 160 FHDSRVRELM 169 (338)
Q Consensus 160 ~~d~~~~~~~ 169 (338)
-.||.++..|
T Consensus 478 DQDPaFRR~F 487 (546)
T COG4615 478 DQDPAFRREF 487 (546)
T ss_pred cCChHHHHHH
Confidence 9999877654
No 391
>PRK08356 hypothetical protein; Provisional
Probab=99.19 E-value=3.5e-10 Score=95.88 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=64.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCccccc----HHHHHHHHHHhccC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLRHG 123 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~l~~~ 123 (338)
.++|+|+|++||||||+++.|++ + ++.+++..+.++.....+ ...+.|.....+. ...+.+.=..+..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~---g~~~is~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~- 76 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-K---GFCRVSCSDPLIDLLTHN---VSDYSWVPEVPFKGEPTRENLIELGRYLKE- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-C---CCcEEeCCCccccccccc---ccccccccHHHHhhccccccHHHHHHHHHH-
Confidence 46899999999999999999964 3 466777766443221111 1111121110000 0011111000000
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccchH-HHhhcCeEEEEecCHHHHHHHHHhhCc
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVRLARRIRRDT 191 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~-~~~~~d~~i~l~~~~~~~~~R~~~R~~ 191 (338)
.| +..--.............+++||.-...... +.+....+|||+++.+++.+|+..|+.
T Consensus 77 ------~y--G~~~~~~~~~~~~~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 77 ------KY--GEDILIRLAVDKKRNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred ------hc--CcHHHHHHHHHHhccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCC
Confidence 00 0000000000011122358999984332222 233346899999999999999998864
No 392
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.19 E-value=2.2e-11 Score=115.07 Aligned_cols=129 Identities=13% Similarity=0.203 Sum_probs=88.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----CEEEEeCCCCCCCCCHHHHHH
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-----RVVLVNQDSFYHNLTEQELAR 96 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-----~~~~l~~D~~~~~l~~~~~~~ 96 (338)
.|+|||| ++.+|.++||.|.|||||||+++.|.+.++.. |-..++..+ .-.++..+...
T Consensus 24 ~v~~vsf---------------~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~d-l~~l~~~~~r~ 87 (539)
T COG1123 24 AVRDVSF---------------EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD-LLGLSEREMRK 87 (539)
T ss_pred eeecceE---------------EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcc-hhcCCHHHHHH
Confidence 5899999 99999999999999999999999999998753 112222211 11222222211
Q ss_pred c----cccCCCCc-------------------------ccccHHHHHHHHHHhccCCccc---cc-cccCcCCccCCCCc
Q 019592 97 V----HEYNFDHP-------------------------DAFDTEKLLSSMEKLRHGQAVD---IP-NYDFKSYKNNVFPA 143 (338)
Q Consensus 97 ~----~~~~~~~~-------------------------~~~~~~~l~~~l~~l~~~~~~~---~~-~~~~~~~~~~~~~~ 143 (338)
+ ..+.|++| ......+..+.|+......... +| .+|+++.+|+..+.
T Consensus 88 ~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAm 167 (539)
T COG1123 88 LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAM 167 (539)
T ss_pred hccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHH
Confidence 1 12223332 1223445566677666655432 44 79999999998888
Q ss_pred cccCCCcEEEEeccccccchHHH
Q 019592 144 RRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+.+.+|+++|+|||+..+|+...
T Consensus 168 ALa~~P~LLIaDEPTTaLDvt~q 190 (539)
T COG1123 168 ALALKPKLLIADEPTTALDVTTQ 190 (539)
T ss_pred HHhCCCCEEEECCCccccCHHHH
Confidence 89999999999999999997533
No 393
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.19 E-value=3.3e-10 Score=92.26 Aligned_cols=176 Identities=18% Similarity=0.222 Sum_probs=97.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 126 (338)
+|.++.|+||||+||||++++|.+..+ ..+.+-.+-. .....+. .=..|.|-.. +.+. ..+..+..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR---~pR~gEv-~G~dY~Fvs~-----~EF~---~~i~~~~fL 69 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTR---KPRPGEV-DGVDYFFVTE-----EEFE---ELIERDEFL 69 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccC---CCCCCCc-CCceeEeCCH-----HHHH---HHHhcCCcE
Confidence 789999999999999999999988762 2222222211 1111110 0012334222 2222 333444455
Q ss_pred ccccccCcCCccC-CCCccccCCCcEEEEeccccccchHHHhhc-C-eEEEEecCHHHHHHHHHhhCccccCCCHHHHHH
Q 019592 127 DIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRELM-N-MKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (338)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~~~~vlIldg~~~~~d~~~~~~~-d-~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (338)
.+..+....+--. ......+..+.-+|+|--+.+. ..+++.+ + ..||+.+|....++|++++.+.+....+...+.
T Consensus 70 E~a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa-~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~ 148 (191)
T COG0194 70 EWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGA-LQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLE 148 (191)
T ss_pred EEEEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHH-HHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHH
Confidence 5555544332221 1111233566778888766653 4555555 3 689999999999999987765443333333333
Q ss_pred HHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
....+. .+ ....|++|.|+ +.+.+++++...+.
T Consensus 149 ~a~~Ei----~~-----~~~fdyvivNd-d~e~a~~~l~~ii~ 181 (191)
T COG0194 149 NAKKEI----SH-----ADEFDYVIVND-DLEKALEELKSIIL 181 (191)
T ss_pred HHHHHH----HH-----HHhCCEEEECc-cHHHHHHHHHHHHH
Confidence 322221 11 35689999888 55555555555443
No 394
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.19 E-value=1.3e-10 Score=97.80 Aligned_cols=120 Identities=16% Similarity=0.271 Sum_probs=64.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC-CH-HHH-HHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL-TE-QEL-ARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l-~~-~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
...+|+|.|++||||||+++.|++.++ +..++.+++.+.. .. ... ..... .+..........+.+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-- 75 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVASGSERGKQLQA-IMESGDLVPLDTVLDLLKDAM-- 75 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCHHHHHHHH-HHHCCCCCCHHHHHHHHHHHH--
Confidence 356899999999999999999999875 6667665543210 00 000 00000 000000011111111111000
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEecccccc-chH-H---HhhcCeEEEEecCHHHHHHHHHhhCc
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH-DSR-V---RELMNMKIFVDTDADVRLARRIRRDT 191 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~-d~~-~---~~~~d~~i~l~~~~~~~~~R~~~R~~ 191 (338)
.........+|+||..... +.. + ....|.+||+++|.+.+.+|+..|..
T Consensus 76 -------------------~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 76 -------------------VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred -------------------HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 0112345678889853221 111 1 12468999999999999999998863
No 395
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.19 E-value=1.8e-11 Score=119.28 Aligned_cols=147 Identities=13% Similarity=0.136 Sum_probs=87.3
Q ss_pred ccccCccccccC---CCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe-CCC-----------
Q 019592 21 FHMDGLEVRNKE---TGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN-QDS----------- 84 (338)
Q Consensus 21 ~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~-~D~----------- 84 (338)
+.++||+++|+. ...+.+.....++.+|.+++|+|+||||||||++.|++.+++. |-..+. ...
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~ 359 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359 (520)
T ss_pred EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhh
Confidence 335566665542 1123344444589999999999999999999999999987642 333332 111
Q ss_pred ----------------CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-------ccccccccCcCCccCCC
Q 019592 85 ----------------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-------AVDIPNYDFKSYKNNVF 141 (338)
Q Consensus 85 ----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-------~~~~~~~~~~~~~~~~~ 141 (338)
++..++..++..+.. .+..+.......+.+.++.+.... ......+|.++.+|+..
T Consensus 360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAI-GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred HHHHhhhEEEEccCcccCCCCcHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 111111111111100 000000001123344555555432 12334789999999888
Q ss_pred CccccCCCcEEEEeccccccchHHHhh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+++.+.+++++|+|||++++|+.....
T Consensus 439 aral~~~p~lLllDEPt~~LD~~~~~~ 465 (520)
T TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVD 465 (520)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 888889999999999999998865443
No 396
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.19 E-value=1.2e-11 Score=121.20 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCcccc-cc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEe
Q 019592 14 SGVHFS-GF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVN 81 (338)
Q Consensus 14 ~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~ 81 (338)
..+.|+ +. .++|+|| ++.+|.+++|+|+||||||||+++|++.+.+. .+.++.
T Consensus 12 l~~~y~~~~~il~~vs~---------------~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~ 76 (556)
T PRK11819 12 VSKVVPPKKQILKDISL---------------SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLP 76 (556)
T ss_pred EEEEeCCCCeeeeCceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEe
Confidence 356665 33 4688888 99999999999999999999999999988651 245677
Q ss_pred CCC-CCCCCCHHHHHHcccc--------------CCCCcc---------------------ccc-HHHHHHHHHHhccCC
Q 019592 82 QDS-FYHNLTEQELARVHEY--------------NFDHPD---------------------AFD-TEKLLSSMEKLRHGQ 124 (338)
Q Consensus 82 ~D~-~~~~l~~~~~~~~~~~--------------~~~~~~---------------------~~~-~~~l~~~l~~l~~~~ 124 (338)
++. ++..++..++..++.. .+..+. .++ ...+.+.+..+....
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 764 3344566555432110 001110 011 123334445444321
Q ss_pred -ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 125 -AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
......+|.++.+++..+...+.+++++|+|||++++|+.
T Consensus 157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~ 197 (556)
T PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197 (556)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChH
Confidence 2233478899999988888888999999999999999985
No 397
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.19 E-value=1.9e-11 Score=107.71 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=79.7
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEEEEeCCCCCCCCC
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQDSFYHNLT 90 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l--~~-~~~~~l~~D~~~~~l~ 90 (338)
.+.|++. .++++|| ++++|.+++|+|+||||||||++.|++.+ ++ .|-..++..+.. ...
T Consensus 8 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~-~~~ 71 (248)
T PRK09580 8 HVSVEDKAILRGLNL---------------EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL-ELS 71 (248)
T ss_pred EEEeCCeeeeeccee---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc-cCC
Confidence 3445443 4688888 99999999999999999999999999984 33 232333222110 011
Q ss_pred HHHHH-HccccCCCCc-------------------------ccccH----HHHHHHHHHhccCCc-c--ccc-cccCcCC
Q 019592 91 EQELA-RVHEYNFDHP-------------------------DAFDT----EKLLSSMEKLRHGQA-V--DIP-NYDFKSY 136 (338)
Q Consensus 91 ~~~~~-~~~~~~~~~~-------------------------~~~~~----~~l~~~l~~l~~~~~-~--~~~-~~~~~~~ 136 (338)
..... ....+.++.+ ...+. +.+.+.+..+..... . ... .+|.++.
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 151 (248)
T PRK09580 72 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151 (248)
T ss_pred HHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHH
Confidence 00000 0000001110 00111 122233333333111 1 111 5888888
Q ss_pred ccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 137 KNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 137 ~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+++..+.+.+.+++++++|+|++++|+....
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~ 182 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALK 182 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 8888888888999999999999999876544
No 398
>PRK13948 shikimate kinase; Provisional
Probab=99.18 E-value=2.5e-10 Score=95.09 Aligned_cols=162 Identities=14% Similarity=0.210 Sum_probs=87.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHH-HHHHHHhccC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL-LSSMEKLRHG 123 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~l~~~ 123 (338)
.+.+..|+++|.+||||||+++.|++.++ ..+++.|.+...........+ |...+.-.+..+ .+.+..+.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~~g~si~~i----f~~~Ge~~fR~~E~~~l~~l~-- 77 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERVTGKSIPEI----FRHLGEAYFRRCEAEVVRRLT-- 77 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHHHhCCHHHH----HHHhCHHHHHHHHHHHHHHHH--
Confidence 45678999999999999999999999886 788899865533221111111 111111111111 11222211
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH---hhcCeEEEEecCHHHHHHHHHhhCc--cccCCCH
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR---ELMNMKIFVDTDADVRLARRIRRDT--VEKGRDI 198 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~---~~~d~~i~l~~~~~~~~~R~~~R~~--~~~~~~~ 198 (338)
.....+|.-|.....++..+ .....+|||+++.++..+|+..++. ...+...
T Consensus 78 -----------------------~~~~~VIa~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~ 134 (182)
T PRK13948 78 -----------------------RLDYAVISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPL 134 (182)
T ss_pred -----------------------hcCCeEEECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChH
Confidence 12234555544444444332 2235799999999999999843211 1111222
Q ss_pred HHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcH-HHHHHHHHHHHH
Q 019592 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIRT 247 (338)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~~~~i~~ 247 (338)
+.+.+.|..+ .|.| +.||++|++++.+. ...+.+++.+..
T Consensus 135 ~~l~~l~~~R-~~~Y--------~~a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 135 GRIRTLLNER-EPVY--------RQATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHHHHHH-HHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 3333334332 3333 34999998664433 344555555544
No 399
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.18 E-value=9.1e-12 Score=100.25 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=91.1
Q ss_pred CCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC-------
Q 019592 14 SGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS------- 84 (338)
Q Consensus 14 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~------- 84 (338)
.-|.|+... |++||+ ....|.+|.|+|.|||||||+++++.=+-.|. +...++.+.
T Consensus 12 lHK~~G~~eVLKGvSL---------------~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 12 LHKRYGEHEVLKGVSL---------------QANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred HHhhcccchhhcceee---------------ecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCC
Confidence 357887777 699999 99999999999999999999999997665542 223332221
Q ss_pred --CCCCCCHHHHHHc---cccCCCCc-----------------------ccccHHHHHHHHHHhccCCcc-ccc-cccCc
Q 019592 85 --FYHNLTEQELARV---HEYNFDHP-----------------------DAFDTEKLLSSMEKLRHGQAV-DIP-NYDFK 134 (338)
Q Consensus 85 --~~~~l~~~~~~~~---~~~~~~~~-----------------------~~~~~~~l~~~l~~l~~~~~~-~~~-~~~~~ 134 (338)
-.......+...+ ..+.|++- ..-..+.....|.+....+.. .+| .++.+
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 1122222332211 11223221 122233444555555443322 334 68888
Q ss_pred CCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 135 SYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 135 ~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
..+|...++++.-.+.++++|+|++.+||++-..
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgE 190 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHH
Confidence 8888888888888999999999999999986543
No 400
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.18 E-value=1.9e-11 Score=131.49 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=102.7
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------------------CCEE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------------------QRVV 78 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--------------------~~~~ 78 (338)
+.+.++||+|+|+++.++.+.....++++|..|||+|++|||||||++.|.+.+.. ..+.
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceE
Confidence 45789999999998778899999999999999999999999999999999998763 2456
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC---------cccc----ccccCcCCccCCCCccc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---------AVDI----PNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---------~~~~----~~~~~~~~~~~~~~~~~ 145 (338)
+++||.+.-.-+..++..... .+..+.+.+.++.....+ +..+ ..+|.|+.+++..+++.
T Consensus 1296 ~IpQdp~LF~GTIR~NLdp~~-------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1296 VIPQKVFIFSGTFRKNLDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred EEeCCCccCccCHHHHhCccc-------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 777777665555555543211 233344455554433221 1111 14777888887778888
Q ss_pred cCCCcEEEEeccccccchHH
Q 019592 146 VNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~ 165 (338)
+.+++++|+||+++.+|...
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~T 1388 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVT 1388 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHH
Confidence 89999999999999987653
No 401
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.18 E-value=2.3e-11 Score=119.27 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=88.5
Q ss_pred Ccccc-cc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeC
Q 019592 15 GVHFS-GF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQ 82 (338)
Q Consensus 15 ~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~ 82 (338)
.+.|+ +. .++|+|| ++.+|.+++|+|+||||||||++.|++.+.+. .+.++++
T Consensus 11 s~~~~~~~~il~~is~---------------~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q 75 (552)
T TIGR03719 11 SKVVPPKKEILKDISL---------------SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQ 75 (552)
T ss_pred EEecCCCCeeecCceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEec
Confidence 45554 33 4678888 99999999999999999999999999987651 2456677
Q ss_pred CC-CCCCCCHHHHHHccccC--------------CCCccc---------------------cc-HHHHHHHHHHhccCC-
Q 019592 83 DS-FYHNLTEQELARVHEYN--------------FDHPDA---------------------FD-TEKLLSSMEKLRHGQ- 124 (338)
Q Consensus 83 D~-~~~~l~~~~~~~~~~~~--------------~~~~~~---------------------~~-~~~l~~~l~~l~~~~- 124 (338)
+. ++..++..++..++... +..+.. ++ ...+.+.+..+....
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 155 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW 155 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcc
Confidence 64 33455666554321100 111100 00 012233344333321
Q ss_pred ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~ 195 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE 195 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChH
Confidence 2234578899999988888888999999999999999984
No 402
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.18 E-value=1.4e-11 Score=119.25 Aligned_cols=144 Identities=9% Similarity=0.057 Sum_probs=85.3
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCCC------------
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYH------------ 87 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~~~------------ 87 (338)
.++|++++|.+ ...+......+.+|.+++|+|+||||||||+++|++.+++ .|-..+...+...
T Consensus 262 ~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (490)
T PRK10938 262 VLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 (490)
T ss_pred EEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce
Confidence 34555555532 1233334448999999999999999999999999997653 2333332211100
Q ss_pred ------------CCCHHHHHHcccc----CCCCcccccHHHHHHHHHHhccCC-cc--ccccccCcCCccCCCCccccCC
Q 019592 88 ------------NLTEQELARVHEY----NFDHPDAFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFPARRVNP 148 (338)
Q Consensus 88 ------------~l~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 148 (338)
..+..+....... .+........+...+.++.+.... .. ....+|.++.+++..+.+.+.+
T Consensus 340 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 419 (490)
T PRK10938 340 YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH 419 (490)
T ss_pred EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence 0011111110000 000000111234456666665543 22 3347899999998888888899
Q ss_pred CcEEEEeccccccchHHHh
Q 019592 149 SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~ 167 (338)
++++++|||++++|+....
T Consensus 420 p~lllLDEPt~gLD~~~~~ 438 (490)
T PRK10938 420 PTLLILDEPLQGLDPLNRQ 438 (490)
T ss_pred CCEEEEcCccccCCHHHHH
Confidence 9999999999999886544
No 403
>PLN03232 ABC transporter C family member; Provisional
Probab=99.18 E-value=1.2e-11 Score=133.18 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=108.3
Q ss_pred cccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CEEEEeCCCCCCCC
Q 019592 20 GFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSFYHNL 89 (338)
Q Consensus 20 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------~~~~l~~D~~~~~l 89 (338)
.+.++|++|+|+.. ..+.+.....++++|..++|+|++|||||||++.|.+.+++. .+.+++|+.+.-+-
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 57789999999854 467888888999999999999999999999999999988762 36889999998888
Q ss_pred CHHHHHHccccCCCCcccccHHHHHH---------HHHHhccCCcccc----ccccCcCCccCCCCccccCCCcEEEEec
Q 019592 90 TEQELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEG 156 (338)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~---------~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vlIldg 156 (338)
+..++..++.. + +.+...+ .++.+..|....+ -.+|+|+++|+..+++...+++++++|+
T Consensus 694 TIreNI~fg~~-~------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDE 766 (1495)
T PLN03232 694 TVRENILFGSD-F------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDD 766 (1495)
T ss_pred cHHHHhhcCCc-c------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 88888776542 2 2222222 2333444433221 2588899999888888899999999999
Q ss_pred cccccchHHH
Q 019592 157 ILVFHDSRVR 166 (338)
Q Consensus 157 ~~~~~d~~~~ 166 (338)
|++.+|+...
T Consensus 767 ptSaLD~~t~ 776 (1495)
T PLN03232 767 PLSALDAHVA 776 (1495)
T ss_pred CccccCHHHH
Confidence 9999997543
No 404
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.8e-11 Score=107.62 Aligned_cols=145 Identities=8% Similarity=-0.023 Sum_probs=79.3
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeC------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQ------------ 82 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------~~~~~l~~------------ 82 (338)
+.+++++++|+.. +.......++++|.+++|+|+||||||||++.|++.+.+ .|-..++.
T Consensus 17 l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 17 SEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred EEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 3344444444321 233333338999999999999999999999999998752 22233322
Q ss_pred ------------CCCCCCCCHHHHHHccccCCCCcc-cccHHHHHHHHHHhccCC------ccccccccCcCCccCCCCc
Q 019592 83 ------------DSFYHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 83 ------------D~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~~ 143 (338)
+......+..++..+....+..+. ....+...+.+..+.... ......+|.++.+++..++
T Consensus 95 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 174 (265)
T PRK14252 95 IEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR 174 (265)
T ss_pred HHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence 111100111121111100000000 000122223333332211 1122357778888877777
Q ss_pred cccCCCcEEEEeccccccchHHHh
Q 019592 144 RRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+.+++++++|+|+.++|+....
T Consensus 175 al~~~p~llllDEPt~gLD~~~~~ 198 (265)
T PRK14252 175 ALATDPEILLFDEPTSALDPIATA 198 (265)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHH
Confidence 888999999999999999876543
No 405
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.18 E-value=2.9e-11 Score=106.76 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=82.5
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHH--hCC-CCEEE-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ--LHD-QRVVL----------- 79 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~--l~~-~~~~~----------- 79 (338)
.+.|++ ..|+++|| ++.+|.+++|+|+||||||||++.|++. +++ .|-..
T Consensus 14 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 14 HASVNENEILKGLNL---------------SINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred EEEeCCEEeeeccee---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 344443 34678888 9999999999999999999999999996 232 22222
Q ss_pred ----------EeCCC-CCCCCCHHHHHHccccC---C-CCc--cccc-HHHHHHHHHHhccCC-cc--ccc-cccCcCCc
Q 019592 80 ----------VNQDS-FYHNLTEQELARVHEYN---F-DHP--DAFD-TEKLLSSMEKLRHGQ-AV--DIP-NYDFKSYK 137 (338)
Q Consensus 80 ----------l~~D~-~~~~l~~~~~~~~~~~~---~-~~~--~~~~-~~~l~~~l~~l~~~~-~~--~~~-~~~~~~~~ 137 (338)
+.++. ++..++..++..+.... + ..+ .... ...+.+.+..+.... .. ... .+|.++.+
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence 22221 11222222222111000 0 000 0000 123344555554431 11 222 38889999
Q ss_pred cCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++..+.+.+.+++++|+|+|+.++|+....
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~ 188 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALK 188 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 988888888999999999999999876543
No 406
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.9e-11 Score=96.10 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=88.6
Q ss_pred CCccc-ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-EEEEeCCCCCC---
Q 019592 14 SGVHF-SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-VVLVNQDSFYH--- 87 (338)
Q Consensus 14 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-~~~l~~D~~~~--- 87 (338)
..+.| +++..+|||| ..-++.+.||.|.|||||||++++|+..+.|. + +.+...+.-+.
T Consensus 12 lsk~Yg~~~gc~~vsF---------------~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 12 LSKLYGPGKGCRDVSF---------------DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred hhhhhCCCcCccccce---------------eecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHh
Confidence 35666 5666999999 99999999999999999999999999998763 2 23333222221
Q ss_pred CCCHHHHHHccc--c--CCCCcc---------------------ccc----HHHHHHHHHHhccCCcc--ccc-cccCcC
Q 019592 88 NLTEQELARVHE--Y--NFDHPD---------------------AFD----TEKLLSSMEKLRHGQAV--DIP-NYDFKS 135 (338)
Q Consensus 88 ~l~~~~~~~~~~--~--~~~~~~---------------------~~~----~~~l~~~l~~l~~~~~~--~~~-~~~~~~ 135 (338)
.+...+...+.. + ..++|. .-. .....++|++....... ..| .|+.+|
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM 156 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence 122222221111 1 112221 011 12334556655554321 333 799999
Q ss_pred CccCCCCccccCCCcEEEEeccccccchH
Q 019592 136 YKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 136 ~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
.+++..+...+..++++++|+|+.++|..
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVS 185 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVS 185 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchh
Confidence 99988888888999999999999998653
No 407
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=3.2e-11 Score=106.35 Aligned_cols=138 Identities=12% Similarity=0.029 Sum_probs=81.2
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CC-----------
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QR----------- 76 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~----~~----------- 76 (338)
.+.|++ ..++|++| +++++.+++|.|+||||||||++.|++.++ + .|
T Consensus 10 ~~~~~~~~~l~~~s~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 10 NTYFDDAHILKNVNL---------------DIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEeCCeEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 345543 35788888 999999999999999999999999998753 1 22
Q ss_pred -----------EEEEeCCCCCCCCCHHHHHHccccCCCCc-ccccHHHHHHHHHHhccCC------ccccccccCcCCcc
Q 019592 77 -----------VVLVNQDSFYHNLTEQELARVHEYNFDHP-DAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKN 138 (338)
Q Consensus 77 -----------~~~l~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~------~~~~~~~~~~~~~~ 138 (338)
+.++.++......+..++..+....+... .......+.+.++.+.... ......+|.++.++
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQR 154 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHH
Confidence 23333332111112222222111001000 0001122223333332211 11234678888888
Q ss_pred CCCCccccCCCcEEEEeccccccchHHHh
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+.+.+.+++++++|+|+.++|+....
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~ 183 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTT 183 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence 87778888999999999999999876433
No 408
>PLN03130 ABC transporter C family member; Provisional
Probab=99.17 E-value=2e-11 Score=131.74 Aligned_cols=146 Identities=19% Similarity=0.242 Sum_probs=109.8
Q ss_pred ccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CEEEEeCCCCCCC
Q 019592 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSFYHN 88 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------~~~~l~~D~~~~~ 88 (338)
+.+.++|++|+|++. ..+.+......+++|..++|+|++|||||||++.|.+.+.+. .+.+++|+.+.-+
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 357889999999754 467888888899999999999999999999999999998753 3688999999888
Q ss_pred CCHHHHHHccccCCCCccccc----HHHHHHHHHHhccCCcccc----ccccCcCCccCCCCccccCCCcEEEEeccccc
Q 019592 89 LTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (338)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~ 160 (338)
-+..++..++.. |+ ++.+. ...+.+.++.+..|....+ ..+|+|+++|+..+++...+++++++|+|++.
T Consensus 693 gTIreNI~fg~~-~d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 693 ATVRDNILFGSP-FD-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred CCHHHHHhCCCc-cc-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 888888776542 21 11111 1112223444444443222 25888999998888889999999999999999
Q ss_pred cchHHH
Q 019592 161 HDSRVR 166 (338)
Q Consensus 161 ~d~~~~ 166 (338)
+|+...
T Consensus 771 LD~~~~ 776 (1622)
T PLN03130 771 LDAHVG 776 (1622)
T ss_pred cCHHHH
Confidence 997643
No 409
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.17 E-value=8.8e-12 Score=100.28 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=68.6
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE-EEEeCCCCCCCCCHHHHHHccc
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV-VLVNQDSFYHNLTEQELARVHE 99 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~-~~l~~D~~~~~l~~~~~~~~~~ 99 (338)
..+++++| ..+++.+++|.|+||||||||++.|++.+++..- ..++.. ....
T Consensus 14 ~~l~~~~~---------------~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------~~i~ 66 (144)
T cd03221 14 LLLKDISL---------------TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------VKIG 66 (144)
T ss_pred eEEEeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------EEEE
Confidence 34788888 9999999999999999999999999998765321 222110 0001
Q ss_pred cCCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 100 YNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 100 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..+.+|.++.+++..+++.+.+++++++|+|+..+|+....
T Consensus 67 ---------------------------~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~ 107 (144)
T cd03221 67 ---------------------------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIE 107 (144)
T ss_pred ---------------------------EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 11226777777777777788999999999999999876443
No 410
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.16 E-value=3e-11 Score=100.11 Aligned_cols=113 Identities=10% Similarity=0.061 Sum_probs=74.6
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC-CCCCCCCHHHHHHcc
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD-SFYHNLTEQELARVH 98 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D-~~~~~l~~~~~~~~~ 98 (338)
...++|+|| +++++.+++|.||||||||||++.+.. ..+-..+... ..+ .....
T Consensus 8 ~~~l~~isl---------------~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~~------~~~~~- 62 (176)
T cd03238 8 VHNLQNLDV---------------SIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPKF------SRNKL- 62 (176)
T ss_pred eeeecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCccccc------ccccE-
Confidence 345899999 999999999999999999999999853 2233333211 111 00001
Q ss_pred ccCCCCcccccHHHHHHHHHHhccCCc---cccccccCcCCccCCCCccccCC--CcEEEEeccccccchHHHh
Q 019592 99 EYNFDHPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNP--SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+ + .+.+..+..... .....++.++.+++..+.+.+.+ ++++++|+|+..+|+....
T Consensus 63 ~~~~--------q--~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~ 126 (176)
T cd03238 63 IFID--------Q--LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDIN 126 (176)
T ss_pred EEEh--------H--HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHH
Confidence 1111 1 345555554321 23346778888887777777788 9999999999999876544
No 411
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.16 E-value=5.5e-11 Score=96.05 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=82.2
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCC
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNF 102 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~ 102 (338)
++.||| +...+..++|+|.||||||||+++|++..+|-.-.++-.|.....-...-........|
T Consensus 29 V~~vSF---------------tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiF 93 (267)
T COG4167 29 VKPVSF---------------TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIF 93 (267)
T ss_pred ccceEE---------------EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeee
Confidence 788999 88999999999999999999999999998874332222222111111111222233344
Q ss_pred CCccc-------------------------ccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEEE
Q 019592 103 DHPDA-------------------------FDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 103 ~~~~~-------------------------~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
++|.. -..+++.+.|.....-. ..+...++.+..+|+..+++..-.++++|.
T Consensus 94 QDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIa 173 (267)
T COG4167 94 QDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIA 173 (267)
T ss_pred cCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEe
Confidence 44431 11233444444443321 223335677788888777888889999999
Q ss_pred eccccccchHHH
Q 019592 155 EGILVFHDSRVR 166 (338)
Q Consensus 155 dg~~~~~d~~~~ 166 (338)
|+....+|...+
T Consensus 174 DeAl~~LD~smr 185 (267)
T COG4167 174 DEALASLDMSMR 185 (267)
T ss_pred hhhhhhccHHHH
Confidence 999998876543
No 412
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.16 E-value=1.5e-10 Score=116.44 Aligned_cols=187 Identities=16% Similarity=0.198 Sum_probs=108.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-- 126 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-- 126 (338)
.+|+|.||+||||||+++.|++.++ +.+++.+.+|+.....-... ....+. ...|.+.+.+.+..+..+..+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~---~~~~~~g~~~r~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG---YAYLDTGAMYRACAWWCLKQ--GIDLDA-ELVDEQVVTEAVGEFFTGLHFDI 75 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEeecCcEeHHHHHHHHhc--CCCcch-hhhhhhhhHHHHHHHHhCCcEEE
Confidence 4899999999999999999999986 78898888885533211110 000000 011222223322222111000
Q ss_pred ---------------------------------ccccccCcCCccCCCCcccc-CC--------CcEEEEeccccccchH
Q 019592 127 ---------------------------------DIPNYDFKSYKNNVFPARRV-NP--------SDVILLEGILVFHDSR 164 (338)
Q Consensus 127 ---------------------------------~~~~~~~~~~~~~~~~~~~~-~~--------~~vlIldg~~~~~d~~ 164 (338)
..|..+..+..+ ++... .. ..-+|+||--.+. .
T Consensus 76 ~~~~~~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~---qr~~~~~~~~~~~~~~~~~~v~eGRdigt--v 150 (712)
T PRK09518 76 SVDPDSPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAA---QRAYIAREASADSFSGGLGIVAEGRDITT--V 150 (712)
T ss_pred ecCCCCcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHH---HHHHHhhcCccccccccCcEEEecCccce--E
Confidence 001111001000 01111 11 2269999977763 3
Q ss_pred HHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCcccc-EEecCCCCcH-HHHHHHH
Q 019592 165 VRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNH-VAIDLIV 242 (338)
Q Consensus 165 ~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~-~~~~~~~ 242 (338)
+.+..|++|||+|+.++|.+|+..+... .+.+.+......+...+. +.+.|.....| ++|+++..+. ..++.+.
T Consensus 151 v~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~ 226 (712)
T PRK09518 151 VAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLI 226 (712)
T ss_pred EecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 4566789999999999999999988642 567888888777777777 88899755555 5555553332 3445555
Q ss_pred HHHHHHhc
Q 019592 243 QHIRTKLG 250 (338)
Q Consensus 243 ~~i~~~l~ 250 (338)
+.+...+.
T Consensus 227 ~~i~~~~~ 234 (712)
T PRK09518 227 GLVEDAIE 234 (712)
T ss_pred HHHHhhhh
Confidence 55554443
No 413
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1.3e-11 Score=119.30 Aligned_cols=127 Identities=8% Similarity=0.065 Sum_probs=77.9
Q ss_pred hhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------------------------CCCCCHHHH
Q 019592 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-------------------------YHNLTEQEL 94 (338)
Q Consensus 41 ~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~-------------------------~~~l~~~~~ 94 (338)
....+..|.+++|+|+||||||||++.|++.+++. |-..++..+. +..++..++
T Consensus 267 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHh
Confidence 33389999999999999999999999999987652 2233322111 111221111
Q ss_pred HH---c--cccCCCC-cccccHHHHHHHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 95 AR---V--HEYNFDH-PDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 95 ~~---~--~~~~~~~-~~~~~~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
.. + ....+.. ...-......+.+..+.... ......+|.++.+++..+.+.+.+++++|+|+|+.++|+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~ 426 (491)
T PRK10982 347 SLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGA 426 (491)
T ss_pred eehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhH
Confidence 00 0 0000000 00011223445556554431 23445799999999888888889999999999999998765
Q ss_pred Hh
Q 019592 166 RE 167 (338)
Q Consensus 166 ~~ 167 (338)
+.
T Consensus 427 ~~ 428 (491)
T PRK10982 427 KF 428 (491)
T ss_pred HH
Confidence 43
No 414
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.15 E-value=1.8e-11 Score=130.85 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=49.3
Q ss_pred ccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
+.+.++||+|+|+.. ..+.+......+++|.+++|+|+||||||||++.|++.+.|
T Consensus 381 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 381 KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC
Confidence 467789999999854 34678888889999999999999999999999999999876
No 415
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.15 E-value=6.5e-11 Score=100.28 Aligned_cols=123 Identities=16% Similarity=0.064 Sum_probs=78.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHH----------------------cccc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELAR----------------------VHEY 100 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~----------------------~~~~ 100 (338)
++.++.--+|.|+||||||||++.+++...+. +...+-...|-+.-...+... ...-
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg 132 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSG 132 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeec
Confidence 88899999999999999999999999987762 112222222221111111100 0000
Q ss_pred CCC-------CcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 101 NFD-------HPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 101 ~~~-------~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.|. .....+.+.....++.+....- ..+..+|.++.+++..+++.+..|.++|+|+|+.++|...+
T Consensus 133 ~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~r 207 (257)
T COG1119 133 FFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207 (257)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHH
Confidence 111 2233344555556666555433 34457788888888888899999999999999999986544
No 416
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.2e-11 Score=119.81 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=88.2
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCCCC---CCCC
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQDSF---YHNL 89 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------~~~l~~D~~---~~~l 89 (338)
++||+++|.+ .+.+......+.+|.++||+|+||||||||+++|++.+.+. | +.+++++.. ....
T Consensus 315 ~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 315 MEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADE 392 (638)
T ss_pred EEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccc
Confidence 4566665532 22344444489999999999999999999999999988652 2 345555421 1111
Q ss_pred CHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-cc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 90 TEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+..+. +.. + .+ ......+.+.|..+.... .. ....+|.|+.+++..+...+.+++++|+|+|++++|+...
T Consensus 393 ~~~~~--~~~--~-~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~ 466 (638)
T PRK10636 393 SPLQH--LAR--L-AP-QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466 (638)
T ss_pred hHHHH--HHH--h-Cc-hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 11111 111 0 01 122344566777766532 22 3457899999998888888899999999999999998543
No 417
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.14 E-value=9.9e-10 Score=91.42 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~ 87 (338)
+.+|.++|++||||||+++.|++.++. .+..++.|.|+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~ 40 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIE 40 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHH
Confidence 568999999999999999999998752 244556776653
No 418
>PRK13947 shikimate kinase; Provisional
Probab=99.14 E-value=4.9e-10 Score=92.86 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=31.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~ 88 (338)
-|.|.|++||||||+++.|++.++ +.+++.|.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~~~ 38 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEIEK 38 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhhhh
Confidence 489999999999999999999986 788888876543
No 419
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.14 E-value=3.2e-11 Score=93.98 Aligned_cols=114 Identities=21% Similarity=0.314 Sum_probs=66.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcc--cccHHHHHHHHHHhccCCccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPD--AFDTEKLLSSMEKLRHGQAVD 127 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~l~~~~~~~ 127 (338)
+|+|+|++||||||+++.|++.++ +.+++.|+++....... . ..+.+. ..+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~l~~~~~----- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDDLIREPGWIE---R---DDDEREYIDADIDLLDDILEQLQN----- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHHHHCCGTHCH---G---CTTCCHHHHHHHHHHHHHHHHHHE-----
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecceEEeccccc---c---CcchhhHHHHHHHHHHHHHHhhhc-----
Confidence 689999999999999999999886 88888888321111100 0 000010 1112222233322210
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccchH-HHhhcCeEEEEecCHHHHHHHHHhhCccccCC
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~-~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~ 196 (338)
......+|+|+... .... .....+..||++++.+.++.|+++|....+|+
T Consensus 67 ------------------~~~~~~~ii~g~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r 117 (121)
T PF13207_consen 67 ------------------KPDNDNWIIDGSYE-SEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGR 117 (121)
T ss_dssp ------------------TTT--EEEEECCSC-HCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEES
T ss_pred ------------------cCCCCeEEEeCCCc-cchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCC
Confidence 23556789999544 1111 22345689999999997777777775444443
No 420
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=3.6e-11 Score=119.43 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=88.0
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE---------EEe
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV---------LVN 81 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~---------~l~ 81 (338)
+..+.|++.. |+|||| ++.+|.++||+|+||||||||+++|++.+.+. |-. ++.
T Consensus 6 nls~~~g~~~~l~~vs~---------------~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~ 70 (638)
T PRK10636 6 SLQIRRGVRVLLDNATA---------------TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVN 70 (638)
T ss_pred EEEEEeCCceeecCcEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEe
Confidence 3457787654 799999 99999999999999999999999999987652 222 233
Q ss_pred CCCCCCCCCHHHHHH--------cc-------------cc-----CCCCccccc-HHHHHHHHHHhccCC---ccccccc
Q 019592 82 QDSFYHNLTEQELAR--------VH-------------EY-----NFDHPDAFD-TEKLLSSMEKLRHGQ---AVDIPNY 131 (338)
Q Consensus 82 ~D~~~~~l~~~~~~~--------~~-------------~~-----~~~~~~~~~-~~~l~~~l~~l~~~~---~~~~~~~ 131 (338)
++......+..+... +. .+ .+...+.++ ...+.+.+..+.... ......+
T Consensus 71 q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 150 (638)
T PRK10636 71 QETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDF 150 (638)
T ss_pred cCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhc
Confidence 322111111111100 00 00 000000111 234555666665532 2244578
Q ss_pred cCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
|.++.+++..+...+.+++++++|+|++++|+.
T Consensus 151 SgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~ 183 (638)
T PRK10636 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLD 183 (638)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHH
Confidence 999999988888888999999999999999974
No 421
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.13 E-value=1.2e-09 Score=91.25 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=30.3
Q ss_pred CCCcEEEEeccccccchHHHhhcC--eEEEEecCHHHHHHHHHhhC
Q 019592 147 NPSDVILLEGILVFHDSRVRELMN--MKIFVDTDADVRLARRIRRD 190 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~~~d--~~i~l~~~~~~~~~R~~~R~ 190 (338)
..+..+|+++-.... ..+++.+. .+||++++.+++.+|+..|.
T Consensus 88 ~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 88 EAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred hcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 355678888765432 33343332 78999999999999999885
No 422
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.13 E-value=8.9e-11 Score=105.75 Aligned_cols=131 Identities=17% Similarity=0.247 Sum_probs=86.4
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe-------------------
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN------------------- 81 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~------------------- 81 (338)
..+++||| +..++..+||.|.|||||||+..+|.+++++.|-..+.
T Consensus 301 ~AVd~isl---------------~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~m 365 (534)
T COG4172 301 RAVDGISL---------------TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRM 365 (534)
T ss_pred EEecccee---------------EecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhc
Confidence 34789999 99999999999999999999999999998875433333
Q ss_pred ----CCCCC---CCCCHHHHHHccccCCC--CcccccHHHHHHHHHHhccCCcc--ccc-cccCcCCccCCCCccccCCC
Q 019592 82 ----QDSFY---HNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 82 ----~D~~~---~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~ 149 (338)
+|.|- ..++..+...-+-...+ ....-..++..+.|.+....... .+| +||.+..+|...+++.+-++
T Consensus 366 QvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP 445 (534)
T COG4172 366 QVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKP 445 (534)
T ss_pred eEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCC
Confidence 33321 11222222111111111 00112223455566665554432 444 79999999988888888999
Q ss_pred cEEEEeccccccchHHH
Q 019592 150 DVILLEGILVFHDSRVR 166 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~ 166 (338)
+++++|+|++.+|..+.
T Consensus 446 ~~i~LDEPTSALD~SVQ 462 (534)
T COG4172 446 ELILLDEPTSALDRSVQ 462 (534)
T ss_pred cEEEecCCchHhhHHHH
Confidence 99999999998876543
No 423
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.11 E-value=1.5e-09 Score=92.55 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
++.+|+|.|++||||||+++.|++.+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999998754
No 424
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=4.4e-11 Score=97.78 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=68.8
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHcccc
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEY 100 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~~ 100 (338)
.+++++| ++.++.+++|+|+||||||||++.|++.+++. +-..++....- ............
T Consensus 14 ~l~~~~~---------------~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~-~~~~~~~~~~i~- 76 (157)
T cd00267 14 ALDNVSL---------------TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA-KLPLEELRRRIG- 76 (157)
T ss_pred eEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc-cCCHHHHHhceE-
Confidence 4788888 99999999999999999999999999987642 22232221111 000001000001
Q ss_pred CCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 101 NFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 101 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
..+.+|.++.+++..+.+.+.+++++++|+|+.++|....
T Consensus 77 --------------------------~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~ 116 (157)
T cd00267 77 --------------------------YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR 116 (157)
T ss_pred --------------------------EEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 1123777777777666777789999999999999986543
No 425
>PLN03073 ABC transporter F family; Provisional
Probab=99.10 E-value=8.7e-11 Score=117.47 Aligned_cols=140 Identities=13% Similarity=0.104 Sum_probs=92.5
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCCCCCCCCC
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQDSFYHNLT 90 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~D~~~~~l~ 90 (338)
+.+++|+++|++. .+........+..+.+++|+|+||||||||++.|++.++|. ++.+++++.+ ..++
T Consensus 509 L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~~l~ 586 (718)
T PLN03073 509 ISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-DGLD 586 (718)
T ss_pred EEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-ccCC
Confidence 4467777777432 12345555589999999999999999999999999988752 2456666532 1222
Q ss_pred HHHH--HHccccCCCCcccccHHHHHHHHHHhccCCc---cccccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 91 EQEL--ARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 91 ~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
.... ..+... + +. .....+.+.+..+..... .....+|.++.+++..+.+.+.+++++|+|+|++++|+..
T Consensus 587 ~~~~~~~~~~~~-~--~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s 662 (718)
T PLN03073 587 LSSNPLLYMMRC-F--PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662 (718)
T ss_pred cchhHHHHHHHh-c--CC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1111 111110 1 11 223455667777665421 2345788999999888888889999999999999998764
Q ss_pred H
Q 019592 166 R 166 (338)
Q Consensus 166 ~ 166 (338)
.
T Consensus 663 ~ 663 (718)
T PLN03073 663 V 663 (718)
T ss_pred H
Confidence 3
No 426
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.10 E-value=7.6e-11 Score=103.94 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=72.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE------------eCCCCCCCCCHHHHH-Hc-cccCCCCccc---
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV------------NQDSFYHNLTEQELA-RV-HEYNFDHPDA--- 107 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l------------~~D~~~~~l~~~~~~-~~-~~~~~~~~~~--- 107 (338)
+.+|.+++|.|+||||||||++.|++.+.+..-.+. ...++. ........ .. ..+.++.+..
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ-NYFTKLLEGDVKVIVKPQYVDLIPK 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh-hhhHHhhhcccceeeecchhccCch
Confidence 788999999999999999999999999876432221 111110 00000000 00 0011111110
Q ss_pred -------------ccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 108 -------------FDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 108 -------------~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.......+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+..+|+....
T Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~ 176 (255)
T cd03236 102 AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176 (255)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence 0112344455555443322 22357788888877777788899999999999999876443
No 427
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.10 E-value=1.7e-11 Score=121.87 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=85.3
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC---------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ--------- 82 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~--------- 82 (338)
..++|++. .|+|||| .+++|.++||+|+||||||||+++|++.+.+. |-..+..
T Consensus 9 ls~~~~~~~il~~is~---------------~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q 73 (635)
T PRK11147 9 AWLSFSDAPLLDNAEL---------------HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeCCceeEeCcEE---------------EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEecc
Confidence 35667654 4799999 99999999999999999999999999987653 3222222
Q ss_pred CCCCCC-CCHHHHHH---------------cccc-C-----------------CCCcccc-cHHHHHHHHHHhccCCccc
Q 019592 83 DSFYHN-LTEQELAR---------------VHEY-N-----------------FDHPDAF-DTEKLLSSMEKLRHGQAVD 127 (338)
Q Consensus 83 D~~~~~-l~~~~~~~---------------~~~~-~-----------------~~~~~~~-~~~~l~~~l~~l~~~~~~~ 127 (338)
+..... .+..+... +... . +.....+ ....+.+.+..+.......
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 153 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAA 153 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCc
Confidence 111110 11111000 0000 0 0000001 1123445555554433334
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
...+|.++.+++..+.+.+.+++++|+|+|++++|+.
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~ 190 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE 190 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHH
Confidence 4578999999988888888999999999999999974
No 428
>PLN02200 adenylate kinase family protein
Probab=99.10 E-value=2.8e-09 Score=92.66 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=68.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 124 (338)
.+.+.+|+|+|++||||||+++.|++.++ +.+++.+++.+.. .. .. ......+.+. +..|.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~----i~------~~---s~~~~~i~~~---~~~G~ 100 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRRE----IA------SN---SEHGAMILNT---IKEGK 100 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHH----Hh------cc---ChhHHHHHHH---HHcCC
Confidence 45678999999999999999999999876 7788887665210 00 00 0001111111 11121
Q ss_pred ccccccccCcCCccCCCCccccCCCcEEEEeccccccch--HH----HhhcCeEEEEecCHHHHHHHHHhhC
Q 019592 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RV----RELMNMKIFVDTDADVRLARRIRRD 190 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~--~~----~~~~d~~i~l~~~~~~~~~R~~~R~ 190 (338)
.+...........++ . ......+|+||.....+. .+ ....|.+||++++.++.++|+..|.
T Consensus 101 ~vp~e~~~~~l~~~l----~-~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 101 IVPSEVTVKLIQKEM----E-SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred CCcHHHHHHHHHHHH----h-cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 111000000000000 0 012245899995432211 11 1246899999999999999999885
No 429
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.09 E-value=1.4e-10 Score=115.07 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=92.0
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEE
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVV 78 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~ 78 (338)
...|+|+|+ .+++|.+++|.|+||||||||++.|++...+. .+.
T Consensus 38 ~~iL~~vs~---------------~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~ 102 (617)
T TIGR00955 38 KHLLKNVSG---------------VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA 102 (617)
T ss_pred cccccCCEE---------------EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhce
Confidence 335788888 99999999999999999999999999977541 125
Q ss_pred EEeCCCC-CCCCCHHHHHHccccCCCCccc----ccHHHHHHHHHHhccCCc----cc----cccccCcCCccCCCCccc
Q 019592 79 LVNQDSF-YHNLTEQELARVHEYNFDHPDA----FDTEKLLSSMEKLRHGQA----VD----IPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~-~~~l~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~l~~~~~----~~----~~~~~~~~~~~~~~~~~~ 145 (338)
++.+++. +..++..++..+... +..|.. .....+.+.++.+..... +. ...+|.++.+|+..+.+.
T Consensus 103 yv~Q~~~~~~~lTV~e~l~f~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 103 YVQQDDLFIPTLTVREHLMFQAH-LRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred eeccccccCccCcHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 5566654 356677776654432 122221 122345566666554321 11 135899999998888888
Q ss_pred cCCCcEEEEeccccccchHH
Q 019592 146 VNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~ 165 (338)
+.+++++++|+|+.++|+..
T Consensus 182 ~~~p~vlllDEPtsgLD~~~ 201 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFM 201 (617)
T ss_pred HcCCCEEEeeCCCcchhHHH
Confidence 99999999999999999753
No 430
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.09 E-value=4.5e-09 Score=86.37 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=29.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
|+|+|++||||||+++.|++.++ ..+++.|+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~---~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG---AKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC---CeEEeCcccc
Confidence 57899999999999999999875 6788999876
No 431
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.08 E-value=3.6e-10 Score=91.90 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=29.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
|.|+|++||||||+++.|++.++ +.+++.|.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHH
Confidence 78999999999999999999885 7788888765
No 432
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.08 E-value=1.2e-10 Score=115.98 Aligned_cols=123 Identities=14% Similarity=0.051 Sum_probs=79.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------CEEEEeCCCC-CCCCCHHHHHHc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------------RVVLVNQDSF-YHNLTEQELARV 97 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------------~~~~l~~D~~-~~~l~~~~~~~~ 97 (338)
+++++.+++|+|+||||||||++.|++.+++. .+.++.++.. +..++..++..+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 109 (648)
T PRK10535 30 DIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV 109 (648)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999987651 2344444432 223343333322
Q ss_pred cccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 98 HEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.......+.........+.++.+...... ....+|.++.+++..+++.+.+++++++|+|+.++|+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 110 PAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 11111111111122344555555443322 2236888888888778888899999999999999998533
No 433
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.08 E-value=1.1e-09 Score=91.66 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.+|+|.||+||||||+++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 46899999999999999999999765
No 434
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.07 E-value=1.1e-10 Score=125.99 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=104.5
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCH
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTE 91 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------~~~~l~~D~~~~~l~~ 91 (338)
.+.++|++|+|+.+..+.+.....++++|.+++|+|++|||||||++.|.+.+++. .+.+++|+.+..+.+.
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti 715 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSL 715 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcH
Confidence 57789999998766567788888899999999999999999999999999988752 3678889887767777
Q ss_pred HHHHHccccCCCCcccccH----HHHHHHHHHhccCCc--c--ccccccCcCCccCCCCccccCCCcEEEEeccccccch
Q 019592 92 QELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~ 163 (338)
.++..++.. ++ ++.++. ..+.+.+..+..|.. + .-..+|+|+.+|+..+++...+++++++|+|++.+|+
T Consensus 716 ~eNI~~g~~-~~-~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 716 RENILFGKA-LN-EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred HHHhhcCCc-cC-HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 777665432 21 111110 001122333333322 1 2236888999998888888999999999999999998
Q ss_pred HH
Q 019592 164 RV 165 (338)
Q Consensus 164 ~~ 165 (338)
..
T Consensus 794 ~~ 795 (1522)
T TIGR00957 794 HV 795 (1522)
T ss_pred HH
Confidence 53
No 435
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.06 E-value=2e-10 Score=110.20 Aligned_cols=137 Identities=10% Similarity=0.062 Sum_probs=89.7
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCCCC--CCCCC
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQDSF--YHNLT 90 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~D~~--~~~l~ 90 (338)
++|+++.|.+. .+-.......+.++..|||+||||+|||||++.|++.+.+. .+.+++|+.- ....+
T Consensus 324 ~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 324 FENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred EeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCc
Confidence 45666655443 33333344489999999999999999999999998877652 2566776531 11111
Q ss_pred HHHHHHccccCCCCcccccHHHHHHHHHHhccCCc-c--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA-V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
..+... ..........+...|..+..... . .+..+|.+...|+..+.....+++++|+|+|+..+|....
T Consensus 403 ~~d~l~------~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 403 VLEELS------EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred HHHHHH------hhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 222111 11111224566777777766543 3 3346888888888777777899999999999999986533
No 436
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.06 E-value=1.7e-10 Score=106.77 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=89.0
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EE
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VV 78 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~ 78 (338)
...++++++.-|+...|++.........|..+||+||||||||||+|.|.+.+.+. | +.
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG 413 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG 413 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC
Confidence 34467777755555667777777799999999999999999999999999988762 2 34
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccc----cHHHHHHHHHHhccCCcccc----ccccCcCCccCCCCccccCCCc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAF----DTEKLLSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
|++||--.-+-+..++.....- ..+++.. ......+.+..+..|-+..+ ..+|.++++|...+++...+|.
T Consensus 414 YLPQdVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 414 YLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred cCcccceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 4444422222222222221000 0011100 01112234444444432211 2578888888877888889999
Q ss_pred EEEEeccccccch
Q 019592 151 VILLEGILVFHDS 163 (338)
Q Consensus 151 vlIldg~~~~~d~ 163 (338)
++++|||-+.+|.
T Consensus 493 lvVLDEPNsNLD~ 505 (580)
T COG4618 493 LVVLDEPNSNLDS 505 (580)
T ss_pred EEEecCCCCCcch
Confidence 9999999998754
No 437
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.06 E-value=1.8e-10 Score=113.28 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=89.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCEEEEeCCCC-CCCCCHHHHHHccccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVLVNQDSF-YHNLTEQELARVHEYN 101 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~~~l~~D~~-~~~l~~~~~~~~~~~~ 101 (338)
..+.+.+.+|.|||||||||++++|+++... ....++.||+. +..++..|...+...
T Consensus 52 ~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~- 130 (613)
T KOG0061|consen 52 TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSAL- 130 (613)
T ss_pred EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHH-
Confidence 8999999999999999999999999998763 12577888765 578888887554332
Q ss_pred CCCcc----cccHHHHHHHHHHhccCCc--c-----ccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 102 FDHPD----AFDTEKLLSSMEKLRHGQA--V-----DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 102 ~~~~~----~~~~~~l~~~l~~l~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+..|. .....+..+.+..+....- . .....+.+.++|+..+...+.+|.++++|||+.++|..
T Consensus 131 lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~ 204 (613)
T KOG0061|consen 131 LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSF 204 (613)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchh
Confidence 23343 2334455566666655421 1 12458889999988888889999999999999999974
No 438
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.2e-10 Score=94.37 Aligned_cols=128 Identities=17% Similarity=0.186 Sum_probs=81.9
Q ss_pred ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCCCCCCCCCHHHHHHccc
Q 019592 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSFYHNLTEQELARVHE 99 (338)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---~~~~~l~~D~~~~~l~~~~~~~~~~ 99 (338)
|++||+ +++.+.+.+|.||||||||||+..|++.-.. .|-..++..+ ..++...+++..+-
T Consensus 20 LkgvnL---------------~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ged-I~~l~~~ERAr~Gi 83 (251)
T COG0396 20 LKGVNL---------------TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED-ILELSPDERARAGI 83 (251)
T ss_pred hcCcce---------------eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcc-cccCCHhHHHhcCC
Confidence 799999 9999999999999999999999999985321 1223344433 34566677665543
Q ss_pred c-CCCCccccc-------------------------HHHHHHHHHHhccCCcc---cc-ccccCcCCccCCCCccccCCC
Q 019592 100 Y-NFDHPDAFD-------------------------TEKLLSSMEKLRHGQAV---DI-PNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 100 ~-~~~~~~~~~-------------------------~~~l~~~l~~l~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 149 (338)
+ .|+.|..+. ...+.+.+..+...... .+ --||.+..+|....+..+-.|
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP 163 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP 163 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence 2 355554321 11222233333332211 11 146777777765555566799
Q ss_pred cEEEEeccccccchHHH
Q 019592 150 DVILLEGILVFHDSRVR 166 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~ 166 (338)
+++|+|+|-+++|-...
T Consensus 164 kl~ILDE~DSGLDIdal 180 (251)
T COG0396 164 KLAILDEPDSGLDIDAL 180 (251)
T ss_pred CEEEecCCCcCccHHHH
Confidence 99999999999875433
No 439
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=99.06 E-value=3.9e-10 Score=92.18 Aligned_cols=115 Identities=26% Similarity=0.403 Sum_probs=82.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC-----CCCEEEEeCCCCCCCCCHHHHHHccccC--------CCCcccccHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH-----DQRVVLVNQDSFYHNLTEQELARVHEYN--------FDHPDAFDTEKLL 114 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~-----~~~~~~l~~D~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~l~ 114 (338)
|.+||++||.||||||++-.|-..+. ...+..++.|+|| ++..+...+...+ -+.+++.|...+.
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFY--LThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ 108 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFY--LTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLV 108 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEeccee--eechhHHHHHhhCCCChhhccCCCCCcccHHHHH
Confidence 89999999999999999987754332 2357899999999 6665544333221 3457889999999
Q ss_pred HHHHHhccCC----ccccccccCcCCc----cCC-CCccccCCCcEEEEeccccccchH
Q 019592 115 SSMEKLRHGQ----AVDIPNYDFKSYK----NNV-FPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 115 ~~l~~l~~~~----~~~~~~~~~~~~~----~~~-~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+.|+.+..+. .+.+|.|+.+... |.. ..+..+.+-.++|+|||+.+..|.
T Consensus 109 evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl 167 (282)
T KOG2878|consen 109 EVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPL 167 (282)
T ss_pred HHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEeccccccccc
Confidence 9998877654 3678888766543 322 223345577899999999987653
No 440
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.05 E-value=1.4e-10 Score=111.27 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=89.3
Q ss_pred CCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeC
Q 019592 14 SGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQ 82 (338)
Q Consensus 14 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------~~~~l~~ 82 (338)
..+.|++.. ++++++ .+.+|..|||+|.||||||||+++|++.+.+. .+.+++|
T Consensus 9 ls~~~g~~~l~~~~~l---------------~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q 73 (530)
T COG0488 9 LSLAYGDRPLLENVSL---------------TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQ 73 (530)
T ss_pred eEEeeCCceeecCCcc---------------eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCC
Confidence 356776666 599999 99999999999999999999999999988651 3678888
Q ss_pred CCCCC-CCCHHHHHH------------ccccC-----------------CCCcccccH-HHHHHHHHHhccCC-cccccc
Q 019592 83 DSFYH-NLTEQELAR------------VHEYN-----------------FDHPDAFDT-EKLLSSMEKLRHGQ-AVDIPN 130 (338)
Q Consensus 83 D~~~~-~l~~~~~~~------------~~~~~-----------------~~~~~~~~~-~~l~~~l~~l~~~~-~~~~~~ 130 (338)
+.... ..+..+... +.... +...+.|+. .+....+..+.... ...+..
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~ 153 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS 153 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhh
Confidence 75442 222221100 00000 000111111 22333444444433 234457
Q ss_pred ccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+|.+...|+..+...+.+|+++++|+|+..+|..
T Consensus 154 LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~ 187 (530)
T COG0488 154 LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHH
Confidence 7888888888888888999999999999999864
No 441
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.05 E-value=1.4e-10 Score=106.09 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=76.0
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCC-------------------CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHH
Q 019592 53 VAGGAASGKTTVCDMIIQQLHDQ-------------------RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEK 112 (338)
Q Consensus 53 I~G~sGSGKTTl~~~L~~~l~~~-------------------~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 112 (338)
|.|+||||||||+++|++.+++. ++.++.++. ++..++..++..+.......+.......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 57999999999999999987651 244555553 3445566665544321111111111234
Q ss_pred HHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 113 LLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 113 l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+.++.+...... ....+|.++.+++..+++.+.+++++++|+|++++|+..+.
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~ 137 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRD 137 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHH
Confidence 45566665554322 33468899999988888888999999999999999986544
No 442
>PRK03839 putative kinase; Provisional
Probab=99.05 E-value=2.5e-09 Score=89.43 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=63.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 129 (338)
.|.|+|++||||||+++.|++.++ +.+++.|+++.... ... .+.......+..+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~~~~~~~------~~~-~~~~~~~~~~~~l~~~~~~---------- 61 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTEFALKKG------IGE-EKDDEMEIDFDKLAYFIEE---------- 61 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhhhhhhcC------Ccc-cCChhhhcCHHHHHHHHHH----------
Confidence 589999999999999999999986 78898887763211 111 1111111122222222211
Q ss_pred cccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhC
Q 019592 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (338)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 190 (338)
... ...+|+||....+ ...|.+||++++.++..+|+..|.
T Consensus 62 ---------------~~~-~~~vIidG~~~~l-----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 62 ---------------EFK-EKNVVLDGHLSHL-----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ---------------hcc-CCCEEEEeccccc-----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 001 1226778855332 246899999999999999998775
No 443
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.04 E-value=2.8e-09 Score=89.29 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=30.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+|.|.|++||||||+++.|++.++ +.+++.+++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~l 34 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLL 34 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHH
Confidence 589999999999999999999886 7889987765
No 444
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.04 E-value=1.4e-09 Score=109.73 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=65.7
Q ss_pred EEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecC
Q 019592 151 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 230 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~ 230 (338)
-+|+||--.+ .-+.+..|++|||+|++++|.+||..-.. ...+.+.+..+...+...+..+-+.|.+...|.++..
T Consensus 191 ~~V~eGRDig--TvVfPdA~~KifL~As~e~RA~RR~~e~~--~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iD 266 (863)
T PRK12269 191 RVVCEGRDLT--TVVFVDADLKCYLDASIEARVARRWAQGT--SRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVD 266 (863)
T ss_pred CEEEECCCCc--cEECCCCCEEEEEECCHHHHHHHHHHhhh--ccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEE
Confidence 4888886554 34556678999999999999999976532 2356777777777766666667788888888865543
Q ss_pred CCCcHHHHHHHHHHHHHHhccc
Q 019592 231 GGDNHVAIDLIVQHIRTKLGQH 252 (338)
Q Consensus 231 ~~~~~~~~~~~~~~i~~~l~~~ 252 (338)
+ +..+++++++.|.+.+..+
T Consensus 267 t--s~l~ieevv~~i~~~~~~~ 286 (863)
T PRK12269 267 T--SCLTIEEVCERIAREAHRR 286 (863)
T ss_pred C--CCCCHHHHHHHHHHHHHhc
Confidence 3 1245666666666555443
No 445
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.03 E-value=3.5e-09 Score=87.79 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=30.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..|.|+|++||||||+++.|++.++ +.+++.|.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~ 37 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG---YRFVDTDQWL 37 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHH
Confidence 4588899999999999999999886 7888888654
No 446
>PLN03140 ABC transporter G family member; Provisional
Probab=99.02 E-value=1.3e-09 Score=116.61 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=92.9
Q ss_pred cccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q 019592 16 VHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------- 75 (338)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------- 75 (338)
+.+....|+|+|+ .+++|.+++|.||||||||||++.|++.+.+.
T Consensus 174 k~~~~~IL~~vs~---------------~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~ 238 (1470)
T PLN03140 174 KKTKLTILKDASG---------------IIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPR 238 (1470)
T ss_pred CCccceeccCCeE---------------EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhccc
Confidence 4454445899999 99999999999999999999999999987641
Q ss_pred -CEEEEeCCC-CCCCCCHHHHHHccccCCC------Ccccc-------------cHH---------------HHHHHHHH
Q 019592 76 -RVVLVNQDS-FYHNLTEQELARVHEYNFD------HPDAF-------------DTE---------------KLLSSMEK 119 (338)
Q Consensus 76 -~~~~l~~D~-~~~~l~~~~~~~~~~~~~~------~~~~~-------------~~~---------------~l~~~l~~ 119 (338)
.+.++.+++ ++..++..+...+...... .+... +.+ .....++.
T Consensus 239 ~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~ 318 (1470)
T PLN03140 239 KTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKI 318 (1470)
T ss_pred ceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHH
Confidence 245666654 4466788776654322110 00000 000 12334555
Q ss_pred hccCCc-------cccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 120 LRHGQA-------VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 120 l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+..... .....+|.++.+|+..+...+.+++++++|||+.++|+.
T Consensus 319 lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~ 370 (1470)
T PLN03140 319 LGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 370 (1470)
T ss_pred cCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHH
Confidence 544321 133579999999998888889999999999999999974
No 447
>PRK14530 adenylate kinase; Provisional
Probab=99.02 E-value=2.1e-09 Score=92.59 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..|+|+|++||||||+++.|++.++ +.+++.+++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~l 38 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDAL 38 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHH
Confidence 4699999999999999999999986 7888887765
No 448
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.01 E-value=9.1e-09 Score=87.20 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVL 79 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~ 79 (338)
++|+|.|++||||||+++.|++.+...+..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v 31 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEV 31 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 3799999999999999999999986544433
No 449
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=4.6e-09 Score=82.43 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=37.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL 89 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l 89 (338)
+.+.+.+|.|.|.+||||||++++|++.|+ +.+++.|+|+..-
T Consensus 8 ~~~~k~~i~vmGvsGsGKSTigk~L~~~l~---~~F~dgDd~Hp~~ 50 (191)
T KOG3354|consen 8 MGPFKYVIVVMGVSGSGKSTIGKALSEELG---LKFIDGDDLHPPA 50 (191)
T ss_pred cCCCceeEEEEecCCCChhhHHHHHHHHhC---CcccccccCCCHH
Confidence 456677999999999999999999999987 8999999988543
No 450
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.01 E-value=1.8e-09 Score=97.93 Aligned_cols=161 Identities=14% Similarity=0.241 Sum_probs=84.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC---CCHHHHHHccccCCCCcccccHHHHHHHHHHh
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN---LTEQELARVHEYNFDHPDAFDTEKLLSSMEKL 120 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 120 (338)
...++..|+|+|++||||||+++.|++.++ +.+++.|..... .+..+.... ++ ...|. ..-.+.+..+
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D~~i~~~~G~~i~ei~~~----~G-~~~fr-~~e~~~l~~l 199 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLG---VPFVELNREIEREAGLSVSEIFAL----YG-QEGYR-RLERRALERL 199 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHHHHHHHHhCCCHHHHHHH----HC-HHHHH-HHHHHHHHHH
Confidence 466788999999999999999999999886 667776643311 111111100 00 00010 0111112111
Q ss_pred ccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh---hcCeEEEEecCHHHHHHHHHhhCcc----c
Q 019592 121 RHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTV----E 193 (338)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~---~~d~~i~l~~~~~~~~~R~~~R~~~----~ 193 (338)
. ...+.++|-.|.....++.... .-.++|||++|.+++.+|+.+|... .
T Consensus 200 l------------------------~~~~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~ 255 (309)
T PRK08154 200 I------------------------AEHEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMAD 255 (309)
T ss_pred H------------------------hhCCCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCC
Confidence 1 1122344444433332332111 1247999999999999999887532 1
Q ss_pred cCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcH-HHHHHHHHHHH
Q 019592 194 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIR 246 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~~~~i~ 246 (338)
.....+.+...+..+ .|.| +.+|++|++++.+. ...+.+...+.
T Consensus 256 ~~~~~e~i~~~~~~R-~~~y--------~~ad~~I~t~~~s~ee~~~~I~~~l~ 300 (309)
T PRK08154 256 NREAMEDLRRILASR-EPLY--------ARADAVVDTSGLTVAQSLARLRELVR 300 (309)
T ss_pred CCChHHHHHHHHHHH-HHHH--------HhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 122233443333332 3333 35999998775432 33444444443
No 451
>PRK13409 putative ATPase RIL; Provisional
Probab=99.00 E-value=1.2e-10 Score=114.33 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=82.4
Q ss_pred hcCCccccc--ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC---C-
Q 019592 12 ASSGVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS---F- 85 (338)
Q Consensus 12 ~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~---~- 85 (338)
....+.|++ +.|++|+. +.+|.++||.|+|||||||++++|++.+.|..-.+..... .
T Consensus 77 ~~~~~~yg~~~~~L~~l~~----------------i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 140 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLPI----------------PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVL 140 (590)
T ss_pred cCceEEecCCceeEecCCc----------------CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHH
Confidence 334566754 46777754 6889999999999999999999999988753212110000 0
Q ss_pred --CCCCCHHHH----HH----c---cccCCCCcccc------------cHHHHHHHHHHhccCCc--cccccccCcCCcc
Q 019592 86 --YHNLTEQEL----AR----V---HEYNFDHPDAF------------DTEKLLSSMEKLRHGQA--VDIPNYDFKSYKN 138 (338)
Q Consensus 86 --~~~l~~~~~----~~----~---~~~~~~~~~~~------------~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~ 138 (338)
+........ .. . ..+.+..|..+ ..+.+.+.++.+..... .....+|.++.++
T Consensus 141 ~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 141 KRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred HHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 100000000 00 0 01111111110 11234455555554332 2445788889999
Q ss_pred CCCCccccCCCcEEEEeccccccchH
Q 019592 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 139 ~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+..+.+.+.+++++++|||++++|+.
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~ 246 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIR 246 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 88888888999999999999999985
No 452
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.00 E-value=3.7e-10 Score=120.73 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=94.3
Q ss_pred cccCccccccC--CCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CC-----------------CEEE
Q 019592 22 HMDGLEVRNKE--TGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---DQ-----------------RVVL 79 (338)
Q Consensus 22 ~l~~~~~~~~~--~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~---~~-----------------~~~~ 79 (338)
.++||+++++. ...+-+......+++|.+++|.|+||||||||++.|++++. +. .+.+
T Consensus 761 ~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~y 840 (1394)
T TIGR00956 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGY 840 (1394)
T ss_pred EEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceee
Confidence 45777666642 22345556666899999999999999999999999999875 21 1345
Q ss_pred EeCCC-CCCCCCHHHHHHccccCC---CCcccccHHHHHHHHHHhccCCccc--c----ccccCcCCccCCCCccccCCC
Q 019592 80 VNQDS-FYHNLTEQELARVHEYNF---DHPDAFDTEKLLSSMEKLRHGQAVD--I----PNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 80 l~~D~-~~~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~ 149 (338)
+.+++ ++..++..+...+..... ..+.....+.+.+.++.+....... . ..+|.++.+|+..+.+.+.++
T Consensus 841 v~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P 920 (1394)
T TIGR00956 841 VQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKP 920 (1394)
T ss_pred ecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCC
Confidence 55543 445667777655432211 1111112234556666655433211 1 158889999988888888899
Q ss_pred c-EEEEeccccccchH
Q 019592 150 D-VILLEGILVFHDSR 164 (338)
Q Consensus 150 ~-vlIldg~~~~~d~~ 164 (338)
+ ++++|||++++|+.
T Consensus 921 ~~iLlLDEPTsgLD~~ 936 (1394)
T TIGR00956 921 KLLLFLDEPTSGLDSQ 936 (1394)
T ss_pred CeEEEEcCCCCCCCHH
Confidence 6 99999999999975
No 453
>PLN03073 ABC transporter F family; Provisional
Probab=99.00 E-value=1.8e-10 Score=115.21 Aligned_cols=142 Identities=14% Similarity=0.101 Sum_probs=82.0
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh----CCC-CEEEEeCCCCCCCCCHHHH-
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL----HDQ-RVVLVNQDSFYHNLTEQEL- 94 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l----~~~-~~~~l~~D~~~~~l~~~~~- 94 (338)
+.++||+++|.+. +-......++..|..+||+|+||||||||+++|++.. +.. .+.+++++......+..+.
T Consensus 178 I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 178 IHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred EEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 4455666655321 2444455599999999999999999999999999743 111 2456666532222221100
Q ss_pred -----------HHccccCC--------------------CCcccccHHHH-------------------HHHHHHhccCC
Q 019592 95 -----------ARVHEYNF--------------------DHPDAFDTEKL-------------------LSSMEKLRHGQ 124 (338)
Q Consensus 95 -----------~~~~~~~~--------------------~~~~~~~~~~l-------------------~~~l~~l~~~~ 124 (338)
.....+.+ ..+..-...++ .+.|..+....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 00000000 00110000112 22222332221
Q ss_pred ---ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 125 ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
......+|.++.+++..+...+.+++++++|+|+.++|+.
T Consensus 336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~ 378 (718)
T PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLH 378 (718)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 1233478888888888888888999999999999999974
No 454
>PRK14532 adenylate kinase; Provisional
Probab=99.00 E-value=2e-09 Score=90.65 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=30.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~ 87 (338)
-|.|.|++||||||+++.|++.++ +.+++.++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHH
Confidence 378999999999999999999875 88899887663
No 455
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.99 E-value=3.9e-10 Score=93.56 Aligned_cols=132 Identities=16% Similarity=0.186 Sum_probs=85.9
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHcc
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVH 98 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~ 98 (338)
...++++++ ++.++.+|.|.|.|||||||+++.+++.+.+. |-..+++.+.-+ .+......+.
T Consensus 19 k~~l~~~sL---------------~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk-~~~~~RA~~l 82 (263)
T COG1101 19 KRALNGLSL---------------EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK-KSVAKRANLL 82 (263)
T ss_pred HHHHhcCce---------------eecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceeccc-CCHHHHhhHH
Confidence 345788899 99999999999999999999999999988763 344554433221 1222222222
Q ss_pred ccCCCCcc------------------------------cccHHHHHHHHHHhccCCc----cccccccCcCCccCCCCcc
Q 019592 99 EYNFDHPD------------------------------AFDTEKLLSSMEKLRHGQA----VDIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 99 ~~~~~~~~------------------------------~~~~~~l~~~l~~l~~~~~----~~~~~~~~~~~~~~~~~~~ 144 (338)
...|++|. .-..+.+.+.+..+..|-. -....+|.+..+.+....+
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MA 162 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMA 162 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHH
Confidence 22333332 1112334445555444422 2334678888877766667
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++++|+-++.+||....
T Consensus 163 tl~~pkiLLLDEHTAALDPkta~ 185 (263)
T COG1101 163 TLHPPKILLLDEHTAALDPKTAE 185 (263)
T ss_pred hcCCCcEEEecchhhcCCcchHH
Confidence 78999999999999999986443
No 456
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.98 E-value=8.2e-10 Score=88.87 Aligned_cols=109 Identities=23% Similarity=0.415 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 124 (338)
+|.+|.|+|.+||||||+|+.|.+.|... .+.+++.|.+.+.+.. .. .|+.+.=.+.+.++..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~-------dl------~fs~~dR~e~~rr~~~-- 65 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA-------DL------GFSKEDREENIRRIAE-- 65 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT-------T--------SSHHHHHHHHHHHHH--
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC-------CC------CCCHHHHHHHHHHHHH--
Confidence 57899999999999999999999988643 4678888765533321 00 1222211222222221
Q ss_pred ccccccccCcCCccCCCCccccCCCcEEEEeccccccc--hHHHhhcC----eEEEEecCHHHHHHHH
Q 019592 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVRELMN----MKIFVDTDADVRLARR 186 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d--~~~~~~~d----~~i~l~~~~~~~~~R~ 186 (338)
.+......+-++|+.....+-+ ...++.+. +.|||+||.+++.+|-
T Consensus 66 ----------------~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 66 ----------------VAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp ----------------HHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred ----------------HHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 1112234555666665444321 22334443 6899999999997664
No 457
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.98 E-value=1.2e-08 Score=82.70 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=31.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~ 88 (338)
+|.|+|++||||||+++.|++.++ +.+++.|.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~---~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG---APFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC---CEEEeCcccccH
Confidence 578999999999999999999865 788899987743
No 458
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.98 E-value=7.8e-10 Score=106.07 Aligned_cols=141 Identities=14% Similarity=0.147 Sum_probs=100.9
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----------CCEEEEeCCCCCCC
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------QRVVLVNQDSFYHN 88 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------~~~~~l~~D~~~~~ 88 (338)
.+++++|+++.-|+.. .-++.....++.|.-+.|.|+||||||||.|.|+++.+- ....+++|-.|...
T Consensus 391 ~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~ 469 (604)
T COG4178 391 HGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQ 469 (604)
T ss_pred ceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCC
Confidence 4566788888665443 445555668899999999999999999999999998763 12466666666544
Q ss_pred CCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--------ccccccCcCCccCCCCccccCCCcEEEEeccccc
Q 019592 89 LTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (338)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~ 160 (338)
-+-.+. ..|.-. +..+..+.+.+.|.+...++-+ -..+++.+..+|+..++..+++|+++++||.+..
T Consensus 470 GtLre~---l~YP~~-~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 470 GTLREA---LCYPNA-APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred ccHHHH---HhCCCC-CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 443333 233222 2236677777777776655321 2247888999998888888999999999999999
Q ss_pred cchH
Q 019592 161 HDSR 164 (338)
Q Consensus 161 ~d~~ 164 (338)
+|+.
T Consensus 546 LDe~ 549 (604)
T COG4178 546 LDEE 549 (604)
T ss_pred cChH
Confidence 8765
No 459
>PRK14527 adenylate kinase; Provisional
Probab=98.98 E-value=3.8e-09 Score=89.24 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=32.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+..++.+|.|.|++||||||+++.|++.++ +..++.++..
T Consensus 2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~ 41 (191)
T PRK14527 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDIL 41 (191)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHH
Confidence 345789999999999999999999998875 5666666544
No 460
>PRK14531 adenylate kinase; Provisional
Probab=98.97 E-value=3.9e-09 Score=88.50 Aligned_cols=141 Identities=14% Similarity=0.206 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC-CCH-HHH-HHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN-LTE-QEL-ARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~-l~~-~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
..|.|+|++||||||+++.|++.++ +.+++.+++.+. +.. .+. .....+ ...........+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~~~~~~~~~~~~~-~~~G~~v~d~l~~~~~~~~----- 73 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVAAGSALGQEAEAV-MNRGELVSDALVLAIVESQ----- 73 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHhcCCHHHHHHHHH-HHcCCCCCHHHHHHHHHHH-----
Confidence 4689999999999999999999876 778888766521 100 000 000000 0000001111111111100
Q ss_pred cccccccCcCCccCCCCccccCCCcEEEEeccccccchH--H---H----hhcCeEEEEecCHHHHHHHHHhhCccccC-
Q 019592 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR--V---R----ELMNMKIFVDTDADVRLARRIRRDTVEKG- 195 (338)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~--~---~----~~~d~~i~l~~~~~~~~~R~~~R~~~~~~- 195 (338)
+ . ......+|+||...-.+.. + . ..++.++|+++|.++..+|+..|......
T Consensus 74 -------------l----~-~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~ 135 (183)
T PRK14531 74 -------------L----K-ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNE 135 (183)
T ss_pred -------------H----h-hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCH
Confidence 0 0 0012346779865432211 1 1 13578999999999999999988543221
Q ss_pred CCHHHHHHHHhhcCcchhhhh
Q 019592 196 RDIATVLDQYSKFVKPAFDDF 216 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~ 216 (338)
..+......|.....|-.+.|
T Consensus 136 e~i~~Rl~~y~~~~~pv~~~y 156 (183)
T PRK14531 136 AVIRNRLEVYREKTAPLIDHY 156 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 122344556666565655444
No 461
>PRK13808 adenylate kinase; Provisional
Probab=98.97 E-value=2.1e-09 Score=97.03 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=29.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.|.|.||+||||||+++.|++.++ +.+++.++++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CceecccHHH
Confidence 378899999999999999999886 7888887765
No 462
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.97 E-value=3.7e-10 Score=121.66 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCHHHHHHccccCCCCcc---cccHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQELARVHEYNFDHPD---AFDTEK 112 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~ 112 (338)
++++|.+++|+|++|||||||++.|++.+++. .+.+++++.+..+.+..++..++.. ++... ..+...
T Consensus 448 ~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~ 526 (1490)
T TIGR01271 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQ 526 (1490)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHh
Confidence 99999999999999999999999999988752 3678888877766677777665432 22100 001112
Q ss_pred HHHHHHHhccCCc--c--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 113 LLSSMEKLRHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 113 l~~~l~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+.+.+..+..+.. + ..-.+|.|+.+|+..+++...+++++++|+|++.+|+...
T Consensus 527 L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~ 584 (1490)
T TIGR01271 527 LEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE 584 (1490)
T ss_pred HHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 2334444444432 1 1236889999998888888899999999999999997533
No 463
>PLN03140 ABC transporter G family member; Provisional
Probab=98.97 E-value=4.2e-10 Score=120.18 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=85.0
Q ss_pred chhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------------------CCEEEEeCCC-CCCCCCHHHHHH
Q 019592 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------------------QRVVLVNQDS-FYHNLTEQELAR 96 (338)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--------------------~~~~~l~~D~-~~~~l~~~~~~~ 96 (338)
+......+++|.+++|.|+||||||||++.|+++..+ ..+.++.+++ ++..++..+...
T Consensus 896 L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~ 975 (1470)
T PLN03140 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLI 975 (1470)
T ss_pred eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHH
Confidence 3445557889999999999999999999999997642 1134555553 345567666654
Q ss_pred ccccCCCCcccc----cHHHHHHHHHHhccCCcc--c-----cccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 97 VHEYNFDHPDAF----DTEKLLSSMEKLRHGQAV--D-----IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 97 ~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
+.... ..|... ......+.++.+...... . ...+|.++.+|+..+...+.+++++++|||++++|+..
T Consensus 976 ~~a~l-r~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 976 YSAFL-RLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHh-CCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 43211 111111 122345566655543211 1 13588899999888888899999999999999999753
No 464
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=9e-10 Score=87.29 Aligned_cols=125 Identities=9% Similarity=0.079 Sum_probs=81.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCC--CCCCHHHHHH---ccccCC---------------
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY--HNLTEQELAR---VHEYNF--------------- 102 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-~~~~~l~~D~~~--~~l~~~~~~~---~~~~~~--------------- 102 (338)
+-+.|..+.+.||||+||||+.+.|.-+--| .|-..+....|- ...+...... -.+..|
T Consensus 24 ~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enl 103 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL 103 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHH
Confidence 8899999999999999999999988654333 233333333332 2222222111 111112
Q ss_pred --------CCcccccHHHHHHHHHHhccCCcc-ccc-cccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 103 --------DHPDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 103 --------~~~~~~~~~~l~~~l~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+.+.........+.|.++...... .+| .++.+..+|+..+++.+..+.++++|+|++.+||++-..
T Consensus 104 ieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaq 179 (242)
T COG4161 104 IEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred HhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHH
Confidence 122233344556677777665443 344 688899999888888889999999999999999976543
No 465
>PRK13973 thymidylate kinase; Provisional
Probab=98.97 E-value=2e-08 Score=86.24 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
+|.+|+|.|..||||||.++.|++.|...+..++..
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 378999999999999999999999997655555433
No 466
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.96 E-value=3.3e-10 Score=121.13 Aligned_cols=128 Identities=14% Similarity=0.079 Sum_probs=88.0
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC----C-C-------------------CE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH----D-Q-------------------RV 77 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~----~-~-------------------~~ 77 (338)
.|+|||+ ..++|.+++|.|+||||||||++.|++.+. + . .+
T Consensus 76 iL~~vs~---------------~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i 140 (1394)
T TIGR00956 76 ILKPMDG---------------LIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDV 140 (1394)
T ss_pred eeeCCEE---------------EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCcee
Confidence 4789999 999999999999999999999999999752 1 1 14
Q ss_pred EEEeCCC-CCCCCCHHHHHHccccCCC---CcccccH----HH-HHHHHHHhccCCcc-------ccccccCcCCccCCC
Q 019592 78 VLVNQDS-FYHNLTEQELARVHEYNFD---HPDAFDT----EK-LLSSMEKLRHGQAV-------DIPNYDFKSYKNNVF 141 (338)
Q Consensus 78 ~~l~~D~-~~~~l~~~~~~~~~~~~~~---~~~~~~~----~~-l~~~l~~l~~~~~~-------~~~~~~~~~~~~~~~ 141 (338)
.++.+++ ++..++..+...+...... .+..... +. ....++.+...+.. ....+|.++.+|+..
T Consensus 141 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsI 220 (1394)
T TIGR00956 141 VYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSI 220 (1394)
T ss_pred EEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHH
Confidence 5556653 4466777776554322110 0001111 11 22345555443321 234699999999988
Q ss_pred CccccCCCcEEEEeccccccchH
Q 019592 142 PARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+...+.+++++++|||+.++|+.
T Consensus 221 A~aL~~~p~vlllDEPTsgLD~~ 243 (1394)
T TIGR00956 221 AEASLGGAKIQCWDNATRGLDSA 243 (1394)
T ss_pred HHHHHhCCCEEEEeCCCCCcCHH
Confidence 88888999999999999999975
No 467
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.95 E-value=5.1e-10 Score=114.88 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=97.2
Q ss_pred CCcccccc--cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE------------
Q 019592 14 SGVHFSGF--HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV------------ 78 (338)
Q Consensus 14 ~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~------------ 78 (338)
..+-|+.+ +++++++ .++++.+.|+.|+|||||||+.+++.+...+. |-.
T Consensus 570 L~k~y~~~~~Av~~ls~---------------~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 570 LSKVYGGKDGAVRGLSF---------------AVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD 634 (885)
T ss_pred eeeeecchhhhhcceEE---------------EecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc
Confidence 34556555 5888888 99999999999999999999999999987752 222
Q ss_pred ---------EEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc--cccccccCcCCccCCCCcccc
Q 019592 79 ---------LVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 79 ---------~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.+|. .+...++..+...+.....+-|..--.+.....++.+..... .....|+.++.+++..+.+.+
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI 714 (885)
T ss_pred hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh
Confidence 23332 233445555554443333333332122234455666665543 355789999999988888889
Q ss_pred CCCcEEEEeccccccchHHHhh
Q 019592 147 NPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~~ 168 (338)
..++++++|+|..+.||..+..
T Consensus 715 g~p~vi~LDEPstGmDP~arr~ 736 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRH 736 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHH
Confidence 9999999999999999875543
No 468
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.95 E-value=4.4e-09 Score=90.74 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=49.6
Q ss_pred cCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccC-cCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 169 MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 169 ~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~-~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
.|++|||+++++.+++|+.+|+.... ..+...|.......|..++.+ +...+++++.+. ++..+++.+++.|.
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~e----~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-~~~~~~e~i~~~I~ 216 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPHE----MKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-TEAGDTEKVVEDIE 216 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCchh----hcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-CChhhHHHHHHHHH
Confidence 58999999999999999988863211 123344555555566666544 345678777654 56678888887765
No 469
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.95 E-value=2.4e-10 Score=96.81 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=70.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE-eC---CCCCCCCC--HHHHHHccccCCCCcccc----cHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV-NQ---DSFYHNLT--EQELARVHEYNFDHPDAF----DTEKL 113 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l-~~---D~~~~~l~--~~~~~~~~~~~~~~~~~~----~~~~l 113 (338)
+..++ +++|+|+||||||||+++|...+++.....+ .. +-++.... .........+.|++|..+ ....+
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~ 97 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDV 97 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhH
Confidence 77788 9999999999999999999988754211000 00 11111100 001112234456655432 22344
Q ss_pred HHHHHHhccCCccccccccCcCCccCCCCcccc----CCCcEEEEeccccccchHHH
Q 019592 114 LSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRV----NPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 114 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.++. ..........++.++.+++..+...+ .+++++++|+|+.++|+...
T Consensus 98 ~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~ 153 (197)
T cd03278 98 SEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANV 153 (197)
T ss_pred HHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHH
Confidence 555554 11112233467777777765544432 46699999999999987643
No 470
>PLN02199 shikimate kinase
Probab=98.94 E-value=7.1e-09 Score=91.42 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=89.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC----CHHHHHHccccCCCCcccccHHHHHHHHHHhcc
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL----TEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH 122 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 122 (338)
.+.-|.|+|.+||||||+++.|++.++ +.+++.|...... +..+.... ++ +..-.+...+.|..+.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD~lIe~~~~G~sI~eIf~~----~G--E~~FR~~E~e~L~~L~- 170 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLG---YTFFDCDTLIEQAMNGTSVAEIFVH----HG--ENFFRGKETDALKKLS- 170 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEehHHHHHHHhcCCCHHHHHHH----hC--HHHHHHHHHHHHHHHH-
Confidence 467899999999999999999999876 8899998765332 11111110 11 0111111122333221
Q ss_pred CCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh--cCeEEEEecCHHHHHHHHHh-----hCccccC
Q 019592 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIR-----RDTVEKG 195 (338)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~--~d~~i~l~~~~~~~~~R~~~-----R~~~~~~ 195 (338)
....++|--|......+..+.. ...+|||+++.+...+|+.. |-... +
T Consensus 171 ------------------------~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~-~ 225 (303)
T PLN02199 171 ------------------------SRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLH-D 225 (303)
T ss_pred ------------------------hcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCC-C
Confidence 1123445444444445543333 25899999999999999974 21111 1
Q ss_pred CCH------HHHHHHHhhcCcchhhhhccCcCccccEEec------------CCCCcH-HHHHHHHHHHHHHhcc
Q 019592 196 RDI------ATVLDQYSKFVKPAFDDFILPTKKYADIIIP------------RGGDNH-VAIDLIVQHIRTKLGQ 251 (338)
Q Consensus 196 ~~~------~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~------------~~~~~~-~~~~~~~~~i~~~l~~ 251 (338)
... ...+....+...|.| .+ ||++|+ .+..+. ..+.++++.+...+..
T Consensus 226 ~~~d~~~~~~~~L~~L~~~R~plY-------~~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~ 292 (303)
T PLN02199 226 ESGDAYSVAFKRLSAIWDERGEAY-------TN-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK 292 (303)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHH-------Hh-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 111 122333333334555 24 999997 232333 4456777777766643
No 471
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=2.5e-09 Score=85.58 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=80.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCC--HHHHHHc--------ccc-----------
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLT--EQELARV--------HEY----------- 100 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~--~~~~~~~--------~~~----------- 100 (338)
+++.|..+++-|+|||||||++++|-..+.+. .+.+-+++++..-.. ..+..+. .++
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLd 112 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALD 112 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHH
Confidence 99999999999999999999999998877653 245555665542211 1111000 000
Q ss_pred -------CCCCcccccHHHHHHHHHHhccCCcc---ccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 101 -------NFDHPDAFDTEKLLSSMEKLRHGQAV---DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 101 -------~~~~~~~~~~~~l~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
..+.+..-...+....|.++...+.. ....||.+..+|+..++..+.+.+++++|+|++.+|..
T Consensus 113 VvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~ 186 (235)
T COG4778 113 VVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAT 186 (235)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccccc
Confidence 01111122234455666666665542 22379999999998888888899999999999988754
No 472
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.94 E-value=1.6e-08 Score=85.88 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=35.8
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCC
Q 019592 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFY 86 (338)
Q Consensus 43 ~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~ 86 (338)
...++|.+|+|+|++||||||+++.|++.+.+. +..+++.|.+.
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 345789999999999999999999999987543 36777777654
No 473
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.93 E-value=1.1e-08 Score=86.52 Aligned_cols=29 Identities=24% Similarity=0.396 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~ 76 (338)
+.+|+|.|+.||||||+++.|++.+...|
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g 31 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENG 31 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 78999999999999999999999987544
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.93 E-value=6.5e-09 Score=88.77 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.+++.+|+|+|++||||||+++.|++.++
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999999999865
No 475
>PTZ00243 ABC transporter; Provisional
Probab=98.92 E-value=6.7e-10 Score=119.91 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=90.4
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------CCEEEEeCCCCCCCCCHHH
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDSFYHNLTEQE 93 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--------~~~~~l~~D~~~~~l~~~~ 93 (338)
.|+|+|| ++++|.+++|+|+||||||||++.|++.+.+ ..+.+++++.+..+.+..+
T Consensus 675 iL~~isl---------------~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~e 739 (1560)
T PTZ00243 675 LLRDVSV---------------SVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRG 739 (1560)
T ss_pred eEeeeEE---------------EECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHH
Confidence 5789999 9999999999999999999999999998865 2467888887665667777
Q ss_pred HHHccccCCCCcccc----cHHHHHHHHHHhccCCc--c--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHH
Q 019592 94 LARVHEYNFDHPDAF----DTEKLLSSMEKLRHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (338)
Q Consensus 94 ~~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~ 165 (338)
+..++.. + +...+ +...+.+.++.+..|.. + ....+|.++.+|+..+++...+++++++|+|++.+|+..
T Consensus 740 nI~~~~~-~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 740 NILFFDE-E-DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHcCCh-h-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 6554321 1 11111 11122333444432321 1 223688888888888888889999999999999999753
No 476
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.91 E-value=3.2e-09 Score=88.34 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSF 85 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~~ 85 (338)
+++.+|+|+|++||||||+++.|++.+...+ +.+++.|.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4688999999999999999999999886443 567777754
No 477
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.91 E-value=1.3e-07 Score=78.58 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=83.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 126 (338)
.+.+++|.|+|||||||+++.|++.+++ ..++.|+++..... ........+.....+. ....+......
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~~~~~~--r~~~~g~~~~~~~~~~---~~~~~~~~~~~--- 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLHPAKNI--DKMSQGIPLTDEDRLP---WLERLNDASYS--- 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccCCHhHH--HHHhcCCCCCcccchH---HHHHHHHHHHH---
Confidence 3678999999999999999999999873 57788876532111 1111223333222111 11111111100
Q ss_pred ccccccCcCCccCCCCccccCCCcEEEEeccccc-cchHHHhhcC--eEEEEecCHHHHHHHHHhhCccccCCCHHHHHH
Q 019592 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF-HDSRVRELMN--MKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (338)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~-~d~~~~~~~d--~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (338)
.+ .. . ...+|+...+.- +....++... ..||++++.++..+|+.+|.. ..-..+....
T Consensus 71 ---~~------------~~-~-~~g~iv~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~--~~~~~~vl~~ 131 (176)
T PRK09825 71 ---LY------------KK-N-ETGFIVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAG--HFMPPDLLQS 131 (176)
T ss_pred ---HH------------hc-C-CCEEEEEEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccC--CCCCHHHHHH
Confidence 00 00 0 122344322211 1112222222 678999999999999999964 2234555555
Q ss_pred HHhhcCcchhhhhccCcCccccEE-ecCCCCcHHHHHHHHHHHHHH
Q 019592 204 QYSKFVKPAFDDFILPTKKYADII-IPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~i-I~~~~~~~~~~~~~~~~i~~~ 248 (338)
|...... |.....+++ |+.+......++.+.+.+...
T Consensus 132 Q~~~~e~--------~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 132 QFDALER--------PCADEHDIARIDVNHDIENVTEQCRQAVQAF 169 (176)
T ss_pred HHHHcCC--------CCCCcCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 5544332 112334544 434433224455666665544
No 478
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.91 E-value=2.5e-08 Score=80.35 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=37.9
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCCCCCC
Q 019592 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFYHNL 89 (338)
Q Consensus 43 ~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~~~~~l 89 (338)
...+++.+|.++|.|||||||+|.+|.+.|...+ +.+++.|..-+.+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL 66 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL 66 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc
Confidence 3566789999999999999999999999887654 4777777655443
No 479
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.90 E-value=2.6e-08 Score=83.62 Aligned_cols=175 Identities=17% Similarity=0.167 Sum_probs=83.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~-~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 126 (338)
+.+|.|+||+||||+|+++.|.+..+. ....+..+-...+. .+.. -..+.|- ..+.+. ..+..+..+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~---~e~~-g~dy~fv-----s~~ef~---~~i~~g~fv 69 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRP---GEVN-GVDYHFV-----SREEFE---DDIKSGLFL 69 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCC---CCcC-CceEEEC-----CHHHHH---HHHHcCCeE
Confidence 568999999999999999999987641 11222222211111 0000 0112221 112222 223334444
Q ss_pred ccccccCcCCccC-CCCccccCCCcEEEEeccccccchHHHh-hcC-eEEEEecCH-HHHHHHHHhhCccccCCCHHHHH
Q 019592 127 DIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRE-LMN-MKIFVDTDA-DVRLARRIRRDTVEKGRDIATVL 202 (338)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~~~~vlIldg~~~~~d~~~~~-~~d-~~i~l~~~~-~~~~~R~~~R~~~~~~~~~~~~~ 202 (338)
.+..+......-. ......+...+.+|+|....+. ..+.+ ..+ .+|||.++. +...+|+..|... +.+.+.
T Consensus 70 e~~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~-~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~----~~~~i~ 144 (184)
T smart00072 70 EWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGV-KQLRKAQLYPIVIFIAPPSSEELERRLRGRGTE----TAERIQ 144 (184)
T ss_pred EEEEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCC----CHHHHH
Confidence 3333332111110 0111223467888988876654 33333 334 789998555 4566666656421 222333
Q ss_pred HHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
........ .... ...+|.+|.|+ +...+.+++.+.|.
T Consensus 145 ~rl~~a~~-~~~~-----~~~fd~~I~n~-~l~~~~~~l~~~i~ 181 (184)
T smart00072 145 KRLAAAQK-EAQE-----YHLFDYVIVND-DLEDAYEELKEILE 181 (184)
T ss_pred HHHHHHHH-HHhh-----hccCCEEEECc-CHHHHHHHHHHHHH
Confidence 22222110 0111 25689999887 44445555555543
No 480
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.90 E-value=4.9e-09 Score=72.95 Aligned_cols=23 Identities=43% Similarity=0.804 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999975
No 481
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.90 E-value=1.5e-08 Score=85.08 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=35.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~~~ 86 (338)
+.++|.+|+|+|++||||||+++.|.+.+...+ +.+++.|.+.
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 567899999999999999999999999885433 5667766543
No 482
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.89 E-value=3.2e-10 Score=89.07 Aligned_cols=114 Identities=23% Similarity=0.365 Sum_probs=59.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcccccc
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPN 130 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 130 (338)
|+|.|++||||||+++.|++.+..........+...... ...........++.+.....+..+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 67 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSI-------DDNPDWKENKRLDMEFQDELLDSIIQAI------ 67 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSH-------CCHHCCCCCCCSCHHHHHHHHHHHHHHH------
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccc-------cccchhhhhhhhhhhhHHHHHHHHHHhh------
Confidence 789999999999999999998610000000000000000 0000011112233333333333332200
Q ss_pred ccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeE-EEEecCHHHHHHHHHhhCcc
Q 019592 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMK-IFVDTDADVRLARRIRRDTV 192 (338)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~-i~l~~~~~~~~~R~~~R~~~ 192 (338)
........+|+|+........ ...... |||+||++++++|+..|...
T Consensus 68 -------------~~~~~~~~~iid~~~~~~~~~--~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 68 -------------RRMNKGRNIIIDGILSNLELE--RLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp -------------HHHTTTSCEEEEESSEEECET--TEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred -------------cccccCCcEEEecccchhccc--ccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 023456678999988764322 222233 99999999999999998643
No 483
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=6.1e-10 Score=115.70 Aligned_cols=172 Identities=13% Similarity=0.220 Sum_probs=106.5
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CCE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~~ 77 (338)
|.+.++|+++||.++.++.+......++++.-|||+|.+||||||++.+|-+...+ .++
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 68889999999999999999999999999999999999999999999999998875 245
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcc---cccHHHHHHHHHHhccCCcccc--ccccCcCCcc--CCCCccccCCCc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPD---AFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKN--NVFPARRVNPSD 150 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~ 150 (338)
.+|+||...-.-+.+.+.+..+. |.+.+ +.+...+++.+..+..+-+..+ .--+++.++| +-.+++.+.+.+
T Consensus 1217 sIIPQdPvLFsGTvR~NLDPf~e-~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDE-YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred eeeCCCCceecCccccccCcccc-cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 66677665432222222111000 00000 1112223333332222211111 1133344444 344667789999
Q ss_pred EEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 019592 151 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (338)
++++||.++..|+. .|..+++.++.. -.+.++..+.|....
T Consensus 1296 ILvLDEATAsVD~~--------------TD~lIQ~tIR~~--F~dcTVltIAHRl~T 1336 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPE--------------TDALIQKTIREE--FKDCTVLTIAHRLNT 1336 (1381)
T ss_pred EEEEecccccCChH--------------HHHHHHHHHHHH--hcCCeEEEEeeccch
Confidence 99999999987654 444555555432 234555555555444
No 484
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.89 E-value=1.7e-09 Score=93.79 Aligned_cols=53 Identities=8% Similarity=-0.013 Sum_probs=35.7
Q ss_pred HHHHHhccCC---ccccccccCcCCccCCCCccccCCC--cEEEEeccccccchHHHh
Q 019592 115 SSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPS--DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 115 ~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~vlIldg~~~~~d~~~~~ 167 (338)
+.+..+.... ......+|.++.+++..+.+.+.++ +++|+|+|+.++|+....
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~ 176 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDND 176 (226)
T ss_pred HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHH
Confidence 4455544432 1133467888888877666666665 699999999999876544
No 485
>PRK13975 thymidylate kinase; Provisional
Probab=98.88 E-value=5.6e-08 Score=82.35 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.+|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999999987
No 486
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.87 E-value=1.7e-08 Score=86.49 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=29.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
|.|.|++||||||+++.|++.++ +.+++.++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHH
Confidence 78999999999999999999875 7888887765
No 487
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.86 E-value=4.3e-08 Score=84.73 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=34.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~ 87 (338)
..++.|.|.|++||||||+++.|++.++ +.+++.+++++
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr 42 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILR 42 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHH
Confidence 4456699999999999999999999886 89999998763
No 488
>PRK02496 adk adenylate kinase; Provisional
Probab=98.86 E-value=1.7e-08 Score=84.62 Aligned_cols=167 Identities=15% Similarity=0.283 Sum_probs=83.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH--H-HHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE--L-ARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~--~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
..|+|.|++||||||+++.|++.++ +..++.++..+.....+ . .....+ .........+.....+....
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~~~~~~g~~~~~~-~~~g~~~~~~~~~~~l~~~l---- 73 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIKEQTPLGIKAQGY-MDKGELVPDQLVLDLVQERL---- 73 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHhccChhHHHHHHH-HHCCCccCHHHHHHHHHHHH----
Confidence 4589999999999999999999876 66777665442110000 0 000000 00000011111111111100
Q ss_pred cccccccCcCCccCCCCccccCCCcEEEEecccc-c-----cchHHH---hhcCeEEEEecCHHHHHHHHHhhCcccc-C
Q 019592 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILV-F-----HDSRVR---ELMNMKIFVDTDADVRLARRIRRDTVEK-G 195 (338)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~-~-----~d~~~~---~~~d~~i~l~~~~~~~~~R~~~R~~~~~-~ 195 (338)
........+|+||.-. . ++..+. ...|.+|++++|.+.+.+|+..|..... .
T Consensus 74 ------------------~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~ 135 (184)
T PRK02496 74 ------------------QQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTE 135 (184)
T ss_pred ------------------hCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCH
Confidence 0011123588898532 1 111111 2468999999999999999998853211 1
Q ss_pred CCHHHHHHHHhhcCcchhhhhccCcCcccc-EEecCCCCcHHHHHHHHHHHHHHh
Q 019592 196 RDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
.........|.....|-.+.| ..... +.|+.+ .+++.+.+.|.+.+
T Consensus 136 ~~~~~r~~~y~~~~~~v~~~~----~~~~~~~~Ida~----~~~~~V~~~i~~~l 182 (184)
T PRK02496 136 EVIRRRLEVYREQTAPLIDYY----RDRQKLLTIDGN----QSVEAVTTELKAAL 182 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhcCCEEEEECC----CCHHHHHHHHHHHh
Confidence 223334445555444444433 11112 334333 34666666666543
No 489
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.86 E-value=1.3e-09 Score=113.28 Aligned_cols=147 Identities=19% Similarity=0.239 Sum_probs=105.0
Q ss_pred cccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------CCEEEEeCCCCCCCCC
Q 019592 20 GFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDSFYHNLT 90 (338)
Q Consensus 20 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--------~~~~~l~~D~~~~~l~ 90 (338)
.+.++|.+|+-..+ ..|++......+++|..++|+|+.|||||+|+.++.+.++. ..+.|++|..|..+-+
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngT 597 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGT 597 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCc
Confidence 35567777743321 33477777779999999999999999999999999998874 2468999999988888
Q ss_pred HHHHHHccccCCCCccccc----HHHHHHHHHHhccCCcccc----ccccCcCCccCCCCccccCCCcEEEEeccccccc
Q 019592 91 EQELARVHEYNFDHPDAFD----TEKLLSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d 162 (338)
.+++.-++.. |+. +.++ --.+.+.++.+..|+...+ -.+|+|+++|...+++...+.++.++|-|++.+|
T Consensus 598 vreNILFG~~-~d~-~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 598 VRENILFGSP-YDE-ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD 675 (1381)
T ss_pred HHHhhhcCcc-ccH-HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence 8887665432 211 1111 1123334455555544322 2688888999888888889999999999999999
Q ss_pred hHHHhh
Q 019592 163 SRVREL 168 (338)
Q Consensus 163 ~~~~~~ 168 (338)
....+.
T Consensus 676 ahvg~~ 681 (1381)
T KOG0054|consen 676 AHVGKH 681 (1381)
T ss_pred HhhhHH
Confidence 876654
No 490
>PRK14528 adenylate kinase; Provisional
Probab=98.85 E-value=2e-08 Score=84.41 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=75.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 128 (338)
..|.|.|++||||||+++.|++.++ +.+++.++..+...... ..++ ..+... +..|..+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~~~-~~~g------------~~~~~~---~~~g~lvp~ 62 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVKNQ-TAMG------------IEAKRY---MDAGDLVPD 62 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhhcC-CHHH------------HHHHHH---HhCCCccCH
Confidence 4689999999999999999999876 77788776652210000 0000 000000 111111000
Q ss_pred ccccCcCCccCCCCccccCCCcEEEEecccccc------chHHH---hhcCeEEEEecCHHHHHHHHHhhCccc-cC-CC
Q 019592 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFH------DSRVR---ELMNMKIFVDTDADVRLARRIRRDTVE-KG-RD 197 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~------d~~~~---~~~d~~i~l~~~~~~~~~R~~~R~~~~-~~-~~ 197 (338)
........+++ ........+|+||.-.-. +..+. ...|.+|++++|.+++++|+..|.... +. .+
T Consensus 63 ~~~~~~~~~~l----~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~ 138 (186)
T PRK14528 63 SVVIGIIKDRI----READCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDN 138 (186)
T ss_pred HHHHHHHHHHH----hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCC
Confidence 00000000000 001123458889842211 11111 247899999999999999999884221 11 12
Q ss_pred ---HHHHHHHHhhcCcchhhhh
Q 019592 198 ---IATVLDQYSKFVKPAFDDF 216 (338)
Q Consensus 198 ---~~~~~~~~~~~~~p~~~~~ 216 (338)
+......|.....|-.+.|
T Consensus 139 ~e~i~~Rl~~y~~~~~pv~~~y 160 (186)
T PRK14528 139 EATIKNRLDNYNKKTLPLLDFY 160 (186)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3334456666666666655
No 491
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.85 E-value=3.3e-09 Score=98.95 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=92.0
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC--C---CCCCCCHHH---
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD--S---FYHNLTEQE--- 93 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D--~---~~~~l~~~~--- 93 (338)
.+.||+|+|+++. -.-.+...-+.....|+++||||+||||+++.+.+.+.|.. ..++-. . .|+.....+
T Consensus 391 ~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~-G~vs~~~H~~~~~y~Qh~~e~ldl 468 (614)
T KOG0927|consen 391 MVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI-GMVSRHSHNKLPRYNQHLAEQLDL 468 (614)
T ss_pred EEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc-ccccccccccchhhhhhhHhhcCc
Confidence 3689999888764 22333444677889999999999999999999999888631 111111 0 111111111
Q ss_pred ----HHHccccCCCCcccccHHHHHHHHHHhccCCc---cccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 94 ----LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 94 ----~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
.... .-.| ++....+.+...|.++..... +....+|.++..++..++..+.++.++++|+|+.++|..
T Consensus 469 ~~s~le~~-~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 469 DKSSLEFM-MPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE 543 (614)
T ss_pred chhHHHHH-HHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence 0000 0012 224666778888888877643 355678888888888777788999999999999998753
No 492
>PLN02674 adenylate kinase
Probab=98.84 E-value=1.8e-08 Score=87.49 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=32.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+....|.|.|++||||||+++.|++.++ +.+++.++.+
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~---~~his~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHH
Confidence 4456788999999999999999999886 7888888765
No 493
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.84 E-value=8.9e-09 Score=85.44 Aligned_cols=163 Identities=15% Similarity=0.221 Sum_probs=85.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHH-hccCCcccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK-LRHGQAVDI 128 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~~~~~ 128 (338)
.|.|.|++||||||+|+.|++.++ +..++.+++++.-.... ..+...... +..++-+.-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~~~-----------------t~lg~~~k~~i~~g~lv~d 61 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIAER-----------------TELGEEIKKYIDKGELVPD 61 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhccC-----------------ChHHHHHHHHHHcCCccch
Confidence 578999999999999999999966 88899887763311110 000111111 112221111
Q ss_pred ccccCcCCccCCCCccccCCCcEEEEec-cccccchHHH--------hhcCeEEEEecCHHHHHHHHHhhCc--cccCCC
Q 019592 129 PNYDFKSYKNNVFPARRVNPSDVILLEG-ILVFHDSRVR--------ELMNMKIFVDTDADVRLARRIRRDT--VEKGRD 197 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vlIldg-~~~~~d~~~~--------~~~d~~i~l~~~~~~~~~R~~~R~~--~~~~~~ 197 (338)
..++.....++. .......+|+|| |-........ ...|..+.++.+.+..+.|...|.. ......
T Consensus 62 ~i~~~~v~~rl~----~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~ 137 (178)
T COG0563 62 EIVNGLVKERLD----EADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEET 137 (178)
T ss_pred HHHHHHHHHHHH----hhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHH
Confidence 111111111111 111112566666 3322112211 2558999999999999999998853 112223
Q ss_pred HHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHH
Q 019592 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
.......|.....|..+.| . +.|+ ....++++.+.+.+.
T Consensus 138 ~~~R~~~y~~~~~pli~~y-----~---~~id----~~~~i~~v~~~i~~~ 176 (178)
T COG0563 138 VKKRLKVYHEQTAPLIEYY-----S---VTID----GSGEIEEVLADILKA 176 (178)
T ss_pred HHHHHHHHHhcccchhhhh-----e---eecc----CCCCHHHHHHHHHHh
Confidence 4444555665555544433 1 4442 234566666666543
No 494
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.84 E-value=1.8e-07 Score=79.37 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=28.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~ 77 (338)
+|++|+|-|.-||||||.++.|++.+...+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~ 32 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI 32 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 5889999999999999999999999987664
No 495
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.82 E-value=1.4e-08 Score=85.12 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=82.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
++.+|.|+||+|||||||++.|.+.++.. +..+..+..-.+. .+.. -..|.|-.. +.+.+ ....+..
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~---~E~~-g~~y~fvs~-----~~f~~---~~~~~~f 68 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRP---GEVD-GVDYHFVSK-----EEFER---MIKAGEF 68 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGT---TS-T-TTSEEE--H-----HHHHH---HHHTTHE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcc---cccC-CcceEEEee-----chhhh---hhccccE
Confidence 35689999999999999999999987631 1223322211100 0000 012223221 22222 2233333
Q ss_pred cccccccCcCCccC-CCCccccCCCcEEEEeccccccchHHHhh-c-CeEEEEecCHHHHHHHHHhhCccccCCCHHHHH
Q 019592 126 VDIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVREL-M-NMKIFVDTDADVRLARRIRRDTVEKGRDIATVL 202 (338)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~~~~~~vlIldg~~~~~d~~~~~~-~-d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~ 202 (338)
+.+..+.....--. ......+..++.+++|.-..+. ..+.+. + -..|||.++....+++++++.... +.+.+.
T Consensus 69 ie~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~-~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~---~~~~i~ 144 (183)
T PF00625_consen 69 IEYGEYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGV-KQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDE---SEEEIE 144 (183)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTTEEEEEETHHHH-HHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHC---HHHHHH
T ss_pred EEEeeecchhhhhccchhhHhhhcCCcEEEEccHHHH-HHHHhcccCceEEEEEccchHHHHHHHhccccc---cHHHHH
Confidence 43333322221110 0111223466677777654443 333332 2 268999988777777776553221 122222
Q ss_pred HHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHH
Q 019592 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 245 (338)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i 245 (338)
.+..... ..+.. ...+|.+|.|+ +.+.++.++.+.|
T Consensus 145 ~r~~~~~-~~~~~-----~~~fd~vi~n~-~le~~~~~l~~ii 180 (183)
T PF00625_consen 145 ERLERAE-KEFEH-----YNEFDYVIVND-DLEEAVKELKEII 180 (183)
T ss_dssp HHHHHHH-HHHGG-----GGGSSEEEECS-SHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhH-----hhcCCEEEECc-CHHHHHHHHHHHH
Confidence 2222111 11111 12289999877 4334444444443
No 496
>PLN02459 probable adenylate kinase
Probab=98.80 E-value=5.5e-08 Score=84.86 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=33.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+.++.|.|.|++||||||+++.|++.++ +.+++.++++
T Consensus 25 ~~~~~~~ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdll 64 (261)
T PLN02459 25 AKGRNVNWVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLV 64 (261)
T ss_pred cccCccEEEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHH
Confidence 344456788899999999999999999876 7888887765
No 497
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.79 E-value=1.8e-08 Score=86.09 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.+.+.+|.|+||+||||||+++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 457899999999999999999999864
No 498
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.79 E-value=2.3e-08 Score=81.78 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=79.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccccccccCcCC
Q 019592 57 AASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSY 136 (338)
Q Consensus 57 sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 136 (338)
+||||||+++.|++.|+ +.+++.|.++..........+... . ..+.| .....+.+..+
T Consensus 1 ~GsGKStvg~~lA~~L~---~~fiD~D~~i~~~~g~si~~i~~~-~-G~~~f-r~~E~~~l~~l---------------- 58 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG---RPFIDLDDEIEERTGMSISEIFAE-E-GEEAF-RELESEALREL---------------- 58 (158)
T ss_dssp TTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHTSHHHHHHHH-H-HHHHH-HHHHHHHHHHH----------------
T ss_pred CCCcHHHHHHHHHHHhC---CCccccCHHHHHHhCCcHHHHHHc-C-ChHHH-HHHHHHHHHHH----------------
Confidence 69999999999999997 899999976522111011000000 0 00000 11111222222
Q ss_pred ccCCCCccccCCCcEEEEeccccccchHHHhh---cCeEEEEecCHHHHHHHHHhhCccccCCCHH---HHHHHHhhcCc
Q 019592 137 KNNVFPARRVNPSDVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRIRRDTVEKGRDIA---TVLDQYSKFVK 210 (338)
Q Consensus 137 ~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~---~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~---~~~~~~~~~~~ 210 (338)
......||.-|......+..++. ...+|||+++.+...+|+..++....-.... .....+. ...
T Consensus 59 ---------~~~~~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R~ 128 (158)
T PF01202_consen 59 ---------LKENNCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-ERE 128 (158)
T ss_dssp ---------HCSSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HHH
T ss_pred ---------hccCcEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HHH
Confidence 12225666666555545554443 3589999999999999998876522111111 2223333 233
Q ss_pred chhhhhccCcCccccEEecCCCCc-HHHHHHHHHHH
Q 019592 211 PAFDDFILPTKKYADIIIPRGGDN-HVAIDLIVQHI 245 (338)
Q Consensus 211 p~~~~~i~~~~~~aD~iI~~~~~~-~~~~~~~~~~i 245 (338)
|.| .+.+|++++.+... +...+.+++.|
T Consensus 129 ~~Y-------~~~a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 129 PLY-------EQAADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp HHH-------HHHSSEEEETSSCHHHHHHHHHHHHH
T ss_pred HHH-------HhcCeEEEeCCCCCHHHHHHHHHHHh
Confidence 455 46789999877655 34455555554
No 499
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.77 E-value=3.6e-08 Score=96.01 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHH-HHHHHHhccCCc
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL-LSSMEKLRHGQA 125 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~l~~~~~ 125 (338)
+...|.++|.+||||||+++.|++.++ +.+++.|.+...........+ |...+.-.+..+ .+.+..+.
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~ie~~~g~si~ei----f~~~Ge~~FR~~E~~~l~~~~---- 73 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEIEREIGMSIPSY----FEEYGEPAFREVEADVVADML---- 73 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHHCcCHHHH----HHHHHHHHHHHHHHHHHHHHH----
Confidence 456789999999999999999999987 889999976522111111111 110011111111 12222211
Q ss_pred cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh-------hcCeEEEEecCHHHHHHHHHhhCccc--cCC
Q 019592 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE-------LMNMKIFVDTDADVRLARRIRRDTVE--KGR 196 (338)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~-------~~d~~i~l~~~~~~~~~R~~~R~~~~--~~~ 196 (338)
.....+|.-|.....++..+. ....+|||+++.++..+|+..+..+. .+.
T Consensus 74 ---------------------~~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~ 132 (542)
T PRK14021 74 ---------------------EDFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGD 132 (542)
T ss_pred ---------------------hcCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCC
Confidence 112335545444433444333 23479999999999999985432111 111
Q ss_pred CHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcH-HHHHHHHHHHH
Q 019592 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIR 246 (338)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~~~~i~ 246 (338)
..+.+.+-|.. ..|.| .+.||++|+.+..+. ...+.+++.+.
T Consensus 133 ~~~~~~~l~~~-R~~~Y-------~~~Ad~~i~~~~~~~~~~~~~i~~~~~ 175 (542)
T PRK14021 133 ANKRWKKLFKQ-RDPVF-------RQVANVHVHTRGLTPQAAAKKLIDMVA 175 (542)
T ss_pred cHHHHHHHHHH-HHHHH-------HhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 22333333333 34444 477999998665443 34455555554
No 500
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.76 E-value=7.9e-08 Score=84.67 Aligned_cols=157 Identities=17% Similarity=0.264 Sum_probs=80.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 127 (338)
+|.++|++||||||+++.|++.+... .+.+++.|.+...+. . +.. ... ..+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~--------~--~~~--~~e-~~~~~~~~~~------- 60 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP--------V--WKE--KYE-EFIRDSTLYL------- 60 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH--------H--hhH--HhH-HHHHHHHHHH-------
Confidence 48899999999999999999987532 355665554321100 0 100 000 0011110000
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccc--hHHHh---hc---CeEEEEecCHHHHHHHHHhhCccccCCCHH
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVRE---LM---NMKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d--~~~~~---~~---d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 199 (338)
....+.....+|+|+...... ..+.. .. ...||+++|.+.+++|...|+.. ...+
T Consensus 61 --------------i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~---~~~~ 123 (249)
T TIGR03574 61 --------------IKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK---IPNE 123 (249)
T ss_pred --------------HHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC---CCHH
Confidence 011123345688888543211 12221 11 26789999999999999887532 1222
Q ss_pred HHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHh
Q 019592 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
.+...+.....|.... .+..++++|+.+.. ...+++.+.|...+
T Consensus 124 ~i~~l~~r~e~p~~~~----~wd~~~~~vd~~~~--~~~~ei~~~i~~~~ 167 (249)
T TIGR03574 124 VIKDMYEKFDEPGTKY----SWDLPDLTIDTTKK--IDYNEILEEILEIS 167 (249)
T ss_pred HHHHHHHhhCCCCCCC----CccCceEEecCCCC--CCHHHHHHHHHHHh
Confidence 2333333333332211 13568899865422 24456666665543
Done!