Query 019592
Match_columns 338
No_of_seqs 300 out of 3052
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 04:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jeo_A Uridine-cytidine kinase 100.0 9.1E-27 3.1E-31 203.7 21.0 214 21-251 13-235 (245)
2 3asz_A Uridine kinase; cytidin 99.9 5.3E-26 1.8E-30 194.2 18.3 206 45-252 3-208 (211)
3 3tqc_A Pantothenate kinase; bi 99.9 1.2E-25 4E-30 202.2 14.5 188 45-234 89-311 (321)
4 3aez_A Pantothenate kinase; tr 99.9 2.1E-25 7.1E-30 201.0 13.1 189 45-234 87-302 (312)
5 1uj2_A Uridine-cytidine kinase 99.9 1.7E-24 6E-29 189.9 18.5 207 44-251 18-233 (252)
6 1sq5_A Pantothenate kinase; P- 99.9 2.5E-24 8.6E-29 194.2 11.7 186 46-233 78-298 (308)
7 1a7j_A Phosphoribulokinase; tr 99.9 1.4E-22 4.9E-27 180.8 10.3 185 46-231 3-215 (290)
8 3c8u_A Fructokinase; YP_612366 99.9 9.7E-22 3.3E-26 167.4 13.4 181 45-230 19-207 (208)
9 1odf_A YGR205W, hypothetical 3 99.8 1.3E-21 4.3E-26 174.5 8.1 186 44-231 27-276 (290)
10 2ga8_A Hypothetical 39.9 kDa p 99.8 6.2E-20 2.1E-24 165.5 9.0 149 77-229 156-349 (359)
11 1rz3_A Hypothetical protein rb 99.8 2.1E-20 7.3E-25 158.2 5.0 175 45-231 19-200 (201)
12 4i1u_A Dephospho-COA kinase; s 99.7 6.7E-19 2.3E-23 148.4 3.8 168 46-233 7-187 (210)
13 2qt1_A Nicotinamide riboside k 99.7 9.8E-18 3.4E-22 142.3 8.7 182 44-249 17-203 (207)
14 2grj_A Dephospho-COA kinase; T 99.7 4.6E-18 1.6E-22 142.3 5.2 155 46-233 10-172 (192)
15 3fvq_A Fe(3+) IONS import ATP- 99.6 1.5E-16 5.3E-21 144.7 5.4 141 13-168 9-176 (359)
16 2f6r_A COA synthase, bifunctio 99.6 5.1E-16 1.8E-20 137.9 8.6 184 45-245 72-266 (281)
17 1jjv_A Dephospho-COA kinase; P 99.6 3.7E-16 1.3E-20 132.4 6.8 176 48-249 2-194 (206)
18 3rlf_A Maltose/maltodextrin im 99.6 1.3E-16 4.4E-21 146.2 3.5 140 13-167 8-170 (381)
19 1bd3_D Uprtase, uracil phospho 99.6 2.6E-16 8.8E-21 134.8 5.0 83 256-338 30-112 (243)
20 2yyz_A Sugar ABC transporter, 99.6 5.8E-16 2E-20 141.3 5.4 140 13-167 8-170 (359)
21 3tui_C Methionine import ATP-b 99.6 4.8E-16 1.6E-20 141.5 4.4 123 44-166 50-199 (366)
22 1v43_A Sugar-binding transport 99.6 8.6E-16 2.9E-20 140.8 6.0 140 13-167 16-178 (372)
23 3dmp_A Uracil phosphoribosyltr 99.6 8.5E-16 2.9E-20 129.5 5.2 78 259-338 9-87 (217)
24 2it1_A 362AA long hypothetical 99.6 7.2E-16 2.4E-20 140.8 4.9 140 13-167 8-170 (362)
25 3tif_A Uncharacterized ABC tra 99.6 4.3E-16 1.5E-20 134.7 3.1 131 22-167 20-182 (235)
26 3gfo_A Cobalt import ATP-bindi 99.6 4.1E-16 1.4E-20 137.6 2.6 140 13-167 12-180 (275)
27 1vpl_A ABC transporter, ATP-bi 99.6 5.3E-16 1.8E-20 135.6 3.2 139 15-168 22-184 (256)
28 1z47_A CYSA, putative ABC-tran 99.6 6.1E-16 2.1E-20 140.8 3.7 139 15-168 21-183 (355)
29 2pcj_A ABC transporter, lipopr 99.6 5.7E-16 1.9E-20 133.0 2.3 139 14-167 10-177 (224)
30 3d31_A Sulfate/molybdate ABC t 99.6 7.8E-16 2.7E-20 139.9 3.1 136 15-168 8-165 (348)
31 2if2_A Dephospho-COA kinase; a 99.6 9.8E-15 3.3E-19 123.4 9.4 174 49-250 2-190 (204)
32 1oxx_K GLCV, glucose, ABC tran 99.6 1.5E-15 5.1E-20 138.6 4.2 140 13-167 8-177 (353)
33 4g1u_C Hemin import ATP-bindin 99.5 1.1E-15 3.8E-20 134.3 3.2 138 13-167 16-184 (266)
34 1vht_A Dephospho-COA kinase; s 99.5 1.2E-15 4.3E-20 130.3 3.4 182 47-248 3-195 (218)
35 1v9s_A Uracil phosphoribosyltr 99.5 2.9E-15 1E-19 125.6 5.0 76 261-338 3-79 (208)
36 3vaa_A Shikimate kinase, SK; s 99.5 8.6E-15 3E-19 123.3 8.0 176 19-249 11-197 (199)
37 1xtt_A Probable uracil phospho 99.5 3.7E-15 1.3E-19 125.6 5.6 78 260-338 2-81 (216)
38 4e22_A Cytidylate kinase; P-lo 99.5 5.9E-14 2E-18 122.7 13.6 96 149-246 145-243 (252)
39 2onk_A Molybdate/tungstate ABC 99.5 9.6E-16 3.3E-20 132.7 1.8 135 15-168 8-164 (240)
40 1o5o_A Uracil phosphoribosyltr 99.5 5.1E-15 1.7E-19 125.1 6.1 78 260-338 14-92 (221)
41 1g6h_A High-affinity branched- 99.5 1.3E-15 4.5E-20 133.5 2.4 140 14-168 13-191 (257)
42 1sgw_A Putative ABC transporte 99.5 1.9E-15 6.5E-20 128.4 3.3 134 16-166 18-169 (214)
43 2olj_A Amino acid ABC transpor 99.5 2.9E-15 9.8E-20 131.4 4.5 138 15-167 31-196 (263)
44 1ji0_A ABC transporter; ATP bi 99.5 3.7E-15 1.3E-19 129.2 5.2 138 14-167 12-176 (240)
45 2ehj_A Uracil phosphoribosyltr 99.5 2.5E-15 8.4E-20 126.1 3.7 76 261-338 3-79 (208)
46 2nq2_C Hypothetical ABC transp 99.5 3.3E-15 1.1E-19 130.4 4.2 138 15-167 11-165 (253)
47 2yz2_A Putative ABC transporte 99.5 4.4E-15 1.5E-19 130.7 5.0 131 22-168 22-176 (266)
48 1g29_1 MALK, maltose transport 99.5 3.1E-15 1.1E-19 137.3 3.8 140 13-167 8-176 (372)
49 1b0u_A Histidine permease; ABC 99.5 4.1E-15 1.4E-19 130.6 4.0 139 14-167 12-190 (262)
50 1uf9_A TT1252 protein; P-loop, 99.5 5.6E-15 1.9E-19 124.6 4.1 178 45-250 5-192 (203)
51 2e55_A Uracil phosphoribosyltr 99.5 7.9E-15 2.7E-19 123.0 4.7 73 265-338 5-78 (208)
52 2ff7_A Alpha-hemolysin translo 99.5 2.5E-15 8.7E-20 130.7 1.6 118 44-167 31-182 (247)
53 1cke_A CK, MSSA, protein (cyti 99.5 2.2E-14 7.4E-19 123.2 6.9 96 148-246 122-221 (227)
54 3nh6_A ATP-binding cassette SU 99.5 3.1E-15 1.1E-19 133.7 1.3 142 19-167 52-227 (306)
55 2cbz_A Multidrug resistance-as 99.5 6.3E-15 2.1E-19 127.5 1.9 120 44-167 27-164 (237)
56 2ihy_A ABC transporter, ATP-bi 99.5 8.2E-15 2.8E-19 129.6 2.3 139 15-168 28-199 (279)
57 2pze_A Cystic fibrosis transme 99.5 1.7E-14 5.7E-19 124.2 4.0 117 44-167 30-167 (229)
58 4eun_A Thermoresistant glucoki 99.5 7.5E-13 2.6E-17 111.5 13.7 163 44-251 25-193 (200)
59 3r20_A Cytidylate kinase; stru 99.5 3.1E-14 1.1E-18 122.1 5.0 187 46-250 7-226 (233)
60 2ixe_A Antigen peptide transpo 99.5 1.1E-14 3.6E-19 128.5 2.2 147 21-167 17-193 (271)
61 1mv5_A LMRA, multidrug resista 99.4 1.8E-14 6E-19 125.2 2.6 124 22-165 17-174 (243)
62 3t61_A Gluconokinase; PSI-biol 99.4 1.4E-12 4.7E-17 110.0 13.0 159 46-251 16-179 (202)
63 3lw7_A Adenylate kinase relate 99.4 3.2E-13 1.1E-17 110.7 8.9 170 49-246 2-175 (179)
64 3b5x_A Lipid A export ATP-bind 99.4 7.9E-14 2.7E-18 136.1 5.8 144 19-167 340-517 (582)
65 2pjz_A Hypothetical protein ST 99.4 2.7E-14 9.3E-19 125.2 2.1 125 21-167 19-165 (263)
66 1i5e_A Uracil phosphoribosyltr 99.4 7.3E-14 2.5E-18 117.9 4.4 77 260-338 3-80 (209)
67 2d2e_A SUFC protein; ABC-ATPas 99.4 2.7E-14 9.4E-19 124.5 1.4 138 15-167 10-180 (250)
68 2ghi_A Transport protein; mult 99.4 5.4E-14 1.8E-18 123.3 2.6 141 21-167 18-192 (260)
69 2qi9_C Vitamin B12 import ATP- 99.4 6.3E-14 2.2E-18 121.9 2.4 127 21-167 14-170 (249)
70 4a82_A Cystic fibrosis transme 99.4 5.2E-14 1.8E-18 137.2 2.0 142 19-166 338-513 (578)
71 4f4c_A Multidrug resistance pr 99.4 3E-14 1E-18 150.5 -0.0 179 18-229 1074-1287(1321)
72 3gd7_A Fusion complex of cysti 99.4 7.1E-14 2.4E-18 128.9 2.4 149 19-168 18-193 (390)
73 2bwj_A Adenylate kinase 5; pho 99.4 2.9E-13 9.9E-18 113.6 5.9 119 45-191 9-138 (199)
74 2zu0_C Probable ATP-dependent 99.4 1E-13 3.5E-18 122.0 3.3 138 15-167 27-201 (267)
75 1q3t_A Cytidylate kinase; nucl 99.4 8.1E-13 2.8E-17 114.3 8.8 176 44-232 12-218 (236)
76 3b60_A Lipid A export ATP-bind 99.4 9E-14 3.1E-18 135.7 3.1 144 19-167 340-517 (582)
77 3nwj_A ATSK2; P loop, shikimat 99.4 1.5E-13 5.1E-18 119.5 4.0 40 44-86 41-83 (250)
78 3ake_A Cytidylate kinase; CMP 99.4 1.5E-12 5.3E-17 109.9 9.8 161 50-232 4-192 (208)
79 1knq_A Gluconate kinase; ALFA/ 99.4 1.6E-11 5.5E-16 100.8 15.4 161 45-249 5-171 (175)
80 1qf9_A UMP/CMP kinase, protein 99.4 1.8E-12 6.1E-17 108.1 9.7 38 46-86 4-41 (194)
81 3tr0_A Guanylate kinase, GMP k 99.4 4E-13 1.4E-17 113.3 5.6 179 44-246 3-185 (205)
82 1tev_A UMP-CMP kinase; ploop, 99.4 3E-12 1E-16 106.8 10.7 170 47-249 2-192 (196)
83 1ukz_A Uridylate kinase; trans 99.4 6.4E-12 2.2E-16 105.8 12.7 39 45-86 12-50 (203)
84 4f4c_A Multidrug resistance pr 99.3 8.1E-14 2.8E-18 147.3 0.3 140 19-164 414-588 (1321)
85 3qf4_A ABC transporter, ATP-bi 99.3 6.9E-14 2.4E-18 136.5 -0.5 143 19-167 340-516 (587)
86 2yl4_A ATP-binding cassette SU 99.3 1.7E-13 5.8E-18 134.1 2.0 143 21-166 342-519 (595)
87 1y63_A LMAJ004144AAA protein; 99.3 4.7E-12 1.6E-16 105.1 10.0 40 44-86 6-46 (184)
88 4eaq_A DTMP kinase, thymidylat 99.3 3.9E-11 1.3E-15 103.1 15.7 50 19-81 9-58 (229)
89 2c95_A Adenylate kinase 1; tra 99.3 3.2E-12 1.1E-16 106.9 8.3 38 46-86 7-44 (196)
90 3qf4_B Uncharacterized ABC tra 99.3 1.8E-13 6.2E-18 133.9 0.6 142 19-167 353-528 (598)
91 2bbs_A Cystic fibrosis transme 99.3 3.2E-13 1.1E-17 120.0 1.7 125 38-167 54-196 (290)
92 2h92_A Cytidylate kinase; ross 99.3 1E-12 3.5E-17 112.1 4.2 184 48-249 3-215 (219)
93 2pbr_A DTMP kinase, thymidylat 99.3 1.3E-11 4.5E-16 102.9 9.9 35 50-84 2-36 (195)
94 2cdn_A Adenylate kinase; phosp 99.3 5.8E-12 2E-16 106.0 7.7 40 44-86 16-55 (201)
95 3trf_A Shikimate kinase, SK; a 99.3 1.2E-12 4.2E-17 108.6 2.3 37 47-86 4-40 (185)
96 2j41_A Guanylate kinase; GMP, 99.3 5.3E-12 1.8E-16 106.5 6.0 136 44-191 2-141 (207)
97 2pt5_A Shikimate kinase, SK; a 99.2 2.9E-12 1E-16 104.5 4.1 159 50-253 2-165 (168)
98 3d3q_A TRNA delta(2)-isopenten 99.2 8.2E-13 2.8E-17 119.0 0.8 145 48-219 7-163 (340)
99 2iyv_A Shikimate kinase, SK; t 99.2 1E-12 3.4E-17 109.0 1.1 159 49-250 3-167 (184)
100 2rhm_A Putative kinase; P-loop 99.2 9.6E-12 3.3E-16 103.7 6.4 171 46-250 3-187 (193)
101 3lnc_A Guanylate kinase, GMP k 99.2 1.5E-12 5E-17 112.2 0.9 40 19-73 13-53 (231)
102 1zuh_A Shikimate kinase; alpha 99.2 7.6E-12 2.6E-16 102.1 4.6 37 47-86 6-42 (168)
103 3bk7_A ABC transporter ATP-bin 99.2 4.7E-12 1.6E-16 123.4 3.8 138 22-167 359-508 (607)
104 3ozx_A RNAse L inhibitor; ATP 99.2 3.9E-12 1.3E-16 122.4 2.7 120 44-166 290-421 (538)
105 2z0h_A DTMP kinase, thymidylat 99.2 4.5E-11 1.5E-15 99.9 8.8 34 50-83 2-35 (197)
106 2qor_A Guanylate kinase; phosp 99.2 4.2E-11 1.4E-15 101.0 8.4 183 45-248 9-197 (204)
107 3g5u_A MCG1178, multidrug resi 99.2 5.1E-12 1.7E-16 133.3 3.3 144 19-166 1029-1207(1284)
108 3kb2_A SPBC2 prophage-derived 99.2 5.3E-11 1.8E-15 97.2 8.7 35 49-86 2-36 (173)
109 3cm0_A Adenylate kinase; ATP-b 99.2 4E-11 1.4E-15 99.3 7.9 38 46-86 2-39 (186)
110 3umf_A Adenylate kinase; rossm 99.2 1E-10 3.5E-15 99.2 10.3 175 43-253 24-215 (217)
111 3g5u_A MCG1178, multidrug resi 99.2 4.3E-12 1.5E-16 133.8 2.2 140 19-164 386-560 (1284)
112 1kag_A SKI, shikimate kinase I 99.2 8.9E-12 3E-16 102.1 3.6 36 47-85 3-38 (173)
113 1qhx_A CPT, protein (chloramph 99.2 9.5E-11 3.3E-15 96.4 9.8 38 48-86 3-40 (178)
114 3a00_A Guanylate kinase, GMP k 99.2 1.7E-11 5.8E-16 101.9 4.8 26 48-73 1-26 (186)
115 3tlx_A Adenylate kinase 2; str 99.2 6.4E-11 2.2E-15 102.7 8.5 39 45-86 26-64 (243)
116 1yqt_A RNAse L inhibitor; ATP- 99.2 7.5E-12 2.6E-16 120.6 2.3 118 44-166 308-437 (538)
117 3fb4_A Adenylate kinase; psych 99.1 5.1E-11 1.7E-15 101.3 7.1 34 50-86 2-35 (216)
118 1via_A Shikimate kinase; struc 99.1 1.6E-11 5.6E-16 100.9 3.1 155 49-250 5-165 (175)
119 1e6c_A Shikimate kinase; phosp 99.1 3.3E-11 1.1E-15 98.6 4.8 35 49-86 3-37 (173)
120 3dl0_A Adenylate kinase; phosp 99.1 6.9E-11 2.4E-15 100.5 6.4 34 50-86 2-35 (216)
121 2wwf_A Thymidilate kinase, put 99.1 3.5E-11 1.2E-15 101.9 4.4 30 45-74 7-36 (212)
122 3uie_A Adenylyl-sulfate kinase 99.1 3.1E-10 1E-14 95.4 9.8 43 44-86 21-65 (200)
123 2plr_A DTMP kinase, probable t 99.1 2.8E-09 9.5E-14 89.9 15.7 30 47-76 3-32 (213)
124 3a4m_A L-seryl-tRNA(SEC) kinas 99.1 7.6E-10 2.6E-14 96.9 12.4 162 46-251 2-173 (260)
125 3iij_A Coilin-interacting nucl 99.1 4E-10 1.4E-14 92.9 10.0 38 46-86 9-46 (180)
126 2vp4_A Deoxynucleoside kinase; 99.1 4.1E-12 1.4E-16 109.3 -2.2 28 44-71 16-43 (230)
127 3tau_A Guanylate kinase, GMP k 99.1 3.9E-11 1.3E-15 101.5 3.6 179 45-246 5-187 (208)
128 3fdi_A Uncharacterized protein 99.1 2.5E-10 8.7E-15 95.9 8.2 31 48-81 6-36 (201)
129 1nn5_A Similar to deoxythymidy 99.1 5E-10 1.7E-14 94.8 10.1 33 45-77 6-38 (215)
130 3j16_B RLI1P; ribosome recycli 99.1 1.2E-10 4.2E-15 113.3 6.6 118 46-167 376-504 (608)
131 1zak_A Adenylate kinase; ATP:A 99.1 2.6E-10 8.8E-15 97.4 7.8 37 47-86 4-40 (222)
132 1nks_A Adenylate kinase; therm 99.1 2E-10 6.7E-15 95.6 6.8 36 49-84 2-39 (194)
133 3hdt_A Putative kinase; struct 99.0 5.3E-10 1.8E-14 95.3 8.8 38 44-84 10-47 (223)
134 2iw3_A Elongation factor 3A; a 99.0 6.7E-11 2.3E-15 119.8 3.6 114 44-164 457-582 (986)
135 1aky_A Adenylate kinase; ATP:A 99.0 2.5E-10 8.6E-15 97.3 6.6 38 46-86 2-39 (220)
136 1kht_A Adenylate kinase; phosp 99.0 2.6E-10 9E-15 94.7 6.4 38 48-85 3-42 (192)
137 2yvu_A Probable adenylyl-sulfa 99.0 2.5E-09 8.6E-14 88.5 12.2 42 44-85 9-52 (186)
138 2jaq_A Deoxyguanosine kinase; 99.0 4.2E-11 1.5E-15 100.6 1.4 74 167-249 123-198 (205)
139 3sr0_A Adenylate kinase; phosp 99.0 4.4E-10 1.5E-14 94.7 6.5 168 49-250 1-203 (206)
140 1zd8_A GTP:AMP phosphotransfer 99.0 4.9E-10 1.7E-14 96.0 6.6 39 45-86 4-42 (227)
141 1z6g_A Guanylate kinase; struc 99.0 2.2E-10 7.4E-15 97.7 3.9 36 22-72 12-47 (218)
142 2xb4_A Adenylate kinase; ATP-b 99.0 9.8E-10 3.4E-14 93.9 7.4 34 50-86 2-35 (223)
143 3be4_A Adenylate kinase; malar 99.0 1.1E-09 3.6E-14 93.3 7.4 37 47-86 4-40 (217)
144 1ak2_A Adenylate kinase isoenz 99.0 2E-09 6.7E-14 92.6 9.0 38 46-86 14-51 (233)
145 2pez_A Bifunctional 3'-phospho 99.0 5.2E-09 1.8E-13 86.1 11.2 38 46-83 3-42 (179)
146 1yqt_A RNAse L inhibitor; ATP- 98.9 3.9E-10 1.3E-14 108.7 3.7 139 24-164 25-192 (538)
147 2vli_A Antibiotic resistance p 98.9 4.6E-09 1.6E-13 86.5 9.4 27 47-73 4-30 (183)
148 1m7g_A Adenylylsulfate kinase; 98.9 3E-09 1E-13 90.0 8.1 43 44-86 21-66 (211)
149 2iw3_A Elongation factor 3A; a 98.9 3.1E-10 1.1E-14 114.9 2.3 54 21-74 672-725 (986)
150 4edh_A DTMP kinase, thymidylat 98.9 8.2E-09 2.8E-13 87.4 10.5 34 47-80 5-38 (213)
151 4tmk_A Protein (thymidylate ki 98.9 8.2E-09 2.8E-13 87.3 10.4 31 47-77 2-32 (213)
152 3lv8_A DTMP kinase, thymidylat 98.9 4.8E-09 1.6E-13 90.1 8.7 31 47-77 26-56 (236)
153 3bk7_A ABC transporter ATP-bin 98.9 6.4E-10 2.2E-14 108.4 3.5 139 24-164 95-262 (607)
154 4hlc_A DTMP kinase, thymidylat 98.9 4E-08 1.4E-12 82.6 14.0 26 48-73 2-27 (205)
155 1zp6_A Hypothetical protein AT 98.9 8.9E-09 3E-13 85.4 9.7 43 42-85 3-45 (191)
156 1ex7_A Guanylate kinase; subst 98.9 1.4E-09 4.9E-14 89.9 4.6 173 50-245 3-182 (186)
157 2v54_A DTMP kinase, thymidylat 98.9 1.1E-08 3.7E-13 85.8 9.9 26 47-72 3-28 (204)
158 3v9p_A DTMP kinase, thymidylat 98.9 1.4E-09 4.6E-14 93.0 4.3 31 44-74 21-51 (227)
159 1kgd_A CASK, peripheral plasma 98.9 1.3E-09 4.4E-14 89.9 4.0 27 47-73 4-30 (180)
160 3gmt_A Adenylate kinase; ssgci 98.8 1.9E-09 6.5E-14 91.8 4.3 37 47-86 7-43 (230)
161 1e4v_A Adenylate kinase; trans 98.8 7.6E-09 2.6E-13 87.7 7.9 34 50-86 2-35 (214)
162 3j16_B RLI1P; ribosome recycli 98.8 7.5E-10 2.6E-14 107.8 0.9 121 44-164 99-255 (608)
163 4gp7_A Metallophosphoesterase; 98.8 6.2E-10 2.1E-14 91.1 0.3 109 44-169 5-122 (171)
164 3ozx_A RNAse L inhibitor; ATP 98.8 9.9E-10 3.4E-14 105.7 1.4 120 45-164 22-172 (538)
165 1s96_A Guanylate kinase, GMP k 98.8 4.3E-09 1.5E-13 89.5 5.2 31 44-74 12-42 (219)
166 3ld9_A DTMP kinase, thymidylat 98.8 4.9E-09 1.7E-13 89.2 4.8 32 43-74 16-47 (223)
167 2v9p_A Replication protein E1; 98.8 1.1E-09 3.8E-14 97.5 0.7 125 21-166 102-229 (305)
168 1ly1_A Polynucleotide kinase; 98.7 1.6E-08 5.5E-13 82.9 7.3 36 48-85 2-37 (181)
169 2ze6_A Isopentenyl transferase 98.7 1.8E-08 6.2E-13 87.7 7.6 34 49-85 2-35 (253)
170 3ux8_A Excinuclease ABC, A sub 98.7 3.5E-09 1.2E-13 105.0 3.1 38 127-164 199-238 (670)
171 1ltq_A Polynucleotide kinase; 98.7 5.4E-08 1.8E-12 86.8 8.9 127 48-207 2-142 (301)
172 2bdt_A BH3686; alpha-beta prot 98.7 6.2E-08 2.1E-12 80.2 8.7 37 48-86 2-38 (189)
173 3hjn_A DTMP kinase, thymidylat 98.7 5.4E-08 1.8E-12 81.3 8.3 31 50-80 2-32 (197)
174 3ux8_A Excinuclease ABC, A sub 98.7 8.7E-09 3E-13 102.2 3.4 40 128-167 541-583 (670)
175 3ney_A 55 kDa erythrocyte memb 98.6 8E-08 2.8E-12 79.9 8.7 28 46-73 17-44 (197)
176 1lvg_A Guanylate kinase, GMP k 98.6 5.4E-08 1.8E-12 81.4 7.3 28 46-73 2-29 (198)
177 3b85_A Phosphate starvation-in 98.6 3.1E-09 1E-13 89.7 -0.5 95 46-160 20-134 (208)
178 1tq4_A IIGP1, interferon-induc 98.6 8.7E-11 3E-15 109.0 -11.4 125 15-164 31-200 (413)
179 3b9q_A Chloroplast SRP recepto 98.6 7.1E-08 2.4E-12 86.0 7.7 40 44-83 96-137 (302)
180 2gks_A Bifunctional SAT/APS ki 98.6 4.3E-08 1.5E-12 94.4 6.6 39 46-84 370-410 (546)
181 3cr8_A Sulfate adenylyltranfer 98.6 4.3E-08 1.5E-12 94.3 6.3 42 44-85 365-409 (552)
182 3zvl_A Bifunctional polynucleo 98.6 2.6E-07 8.9E-12 86.2 11.4 39 44-85 254-292 (416)
183 1p5z_B DCK, deoxycytidine kina 98.6 3.1E-08 1E-12 86.7 4.6 36 44-81 20-55 (263)
184 2ocp_A DGK, deoxyguanosine kin 98.6 2.8E-08 9.6E-13 85.8 4.2 78 168-249 149-238 (241)
185 3ch4_B Pmkase, phosphomevalona 98.6 1.1E-06 3.8E-11 72.9 13.3 41 44-84 7-47 (202)
186 2p5t_B PEZT; postsegregational 98.5 3.6E-07 1.2E-11 79.4 10.1 43 44-87 28-70 (253)
187 1htw_A HI0065; nucleotide-bind 98.5 3.8E-08 1.3E-12 79.2 3.4 43 16-73 15-58 (158)
188 1x6v_B Bifunctional 3'-phospho 98.5 4.5E-07 1.6E-11 88.0 11.4 38 47-84 51-90 (630)
189 1m8p_A Sulfate adenylyltransfe 98.5 4.5E-07 1.5E-11 87.8 10.0 41 45-85 393-436 (573)
190 2og2_A Putative signal recogni 98.5 2.3E-07 7.7E-12 84.5 7.5 41 44-84 153-195 (359)
191 2npi_A Protein CLP1; CLP1-PCF1 98.5 6.3E-10 2.2E-14 104.9 -10.1 118 44-164 134-276 (460)
192 3a8t_A Adenylate isopentenyltr 98.4 7.2E-07 2.4E-11 80.0 9.8 43 46-91 38-82 (339)
193 1gtv_A TMK, thymidylate kinase 98.4 2.7E-09 9.2E-14 90.2 -6.2 28 50-77 2-29 (214)
194 1gvn_B Zeta; postsegregational 98.4 3.3E-07 1.1E-11 81.2 6.9 42 45-87 30-71 (287)
195 2vf7_A UVRA2, excinuclease ABC 98.4 4.6E-08 1.6E-12 98.1 1.4 53 114-166 711-769 (842)
196 2x8a_A Nuclear valosin-contain 98.3 3.3E-07 1.1E-11 80.6 4.6 40 44-86 42-81 (274)
197 3sop_A Neuronal-specific septi 98.3 2.1E-07 7.2E-12 81.6 3.2 26 49-74 3-28 (270)
198 1dek_A Deoxynucleoside monopho 98.3 4E-07 1.4E-11 78.2 4.7 30 49-81 2-31 (241)
199 1znw_A Guanylate kinase, GMP k 98.3 2.8E-07 9.7E-12 77.5 3.7 30 44-73 16-45 (207)
200 2r6f_A Excinuclease ABC subuni 98.3 3.8E-07 1.3E-11 92.0 4.9 54 114-167 826-885 (972)
201 3pih_A Uvrabc system protein A 98.3 4.8E-07 1.6E-11 91.6 5.2 40 128-167 803-845 (916)
202 2pt7_A CAG-ALFA; ATPase, prote 98.3 3.4E-08 1.2E-12 89.3 -2.9 38 44-81 167-205 (330)
203 4aby_A DNA repair protein RECN 98.3 8.8E-08 3E-12 89.4 -0.8 41 17-73 44-85 (415)
204 2kjq_A DNAA-related protein; s 98.2 1.4E-06 4.7E-11 69.3 5.8 38 47-84 35-74 (149)
205 2ygr_A Uvrabc system protein A 98.2 8.4E-07 2.9E-11 89.9 5.2 53 115-167 845-903 (993)
206 2yhs_A FTSY, cell division pro 98.2 1.9E-06 6.3E-11 81.2 5.8 41 44-84 289-331 (503)
207 2qag_B Septin-6, protein NEDD5 98.1 6.1E-07 2.1E-11 83.2 1.9 42 15-71 22-65 (427)
208 2eyu_A Twitching motility prot 98.1 1.6E-06 5.4E-11 75.6 4.5 40 45-84 22-63 (261)
209 3thx_B DNA mismatch repair pro 98.1 2.1E-06 7.1E-11 87.1 5.6 37 20-71 660-696 (918)
210 3thx_A DNA mismatch repair pro 98.1 3.2E-06 1.1E-10 86.0 5.6 27 44-70 658-684 (934)
211 3tmk_A Thymidylate kinase; pho 98.0 2E-06 6.9E-11 72.6 3.4 29 46-74 3-31 (216)
212 3foz_A TRNA delta(2)-isopenten 98.0 6.4E-06 2.2E-10 72.9 6.6 44 44-90 6-51 (316)
213 3euj_A Chromosome partition pr 98.0 2E-06 6.7E-11 81.1 3.3 38 22-75 19-56 (483)
214 2gza_A Type IV secretion syste 98.0 5.5E-07 1.9E-11 82.4 -0.9 60 22-81 137-209 (361)
215 3exa_A TRNA delta(2)-isopenten 98.0 6.5E-06 2.2E-10 72.9 5.4 42 47-91 2-45 (322)
216 1ye8_A Protein THEP1, hypothet 98.0 3.6E-06 1.2E-10 69.0 3.4 24 50-73 2-25 (178)
217 2qm8_A GTPase/ATPase; G protei 98.0 5.3E-06 1.8E-10 75.1 4.9 54 15-83 36-92 (337)
218 3crm_A TRNA delta(2)-isopenten 98.0 8.1E-06 2.8E-10 72.9 5.8 36 47-85 4-39 (323)
219 2bbw_A Adenylate kinase 4, AK4 98.0 4.2E-06 1.4E-10 72.2 3.8 27 47-73 26-52 (246)
220 2obl_A ESCN; ATPase, hydrolase 98.0 2.7E-06 9.2E-11 77.3 2.6 32 44-75 67-98 (347)
221 1cr0_A DNA primase/helicase; R 97.9 4.3E-06 1.5E-10 74.2 3.7 48 21-83 23-73 (296)
222 2ehv_A Hypothetical protein PH 97.9 5.9E-06 2E-10 71.1 4.5 41 44-84 26-69 (251)
223 3e70_C DPA, signal recognition 97.9 1.8E-05 6.2E-10 71.2 6.9 42 44-85 125-168 (328)
224 2dpy_A FLII, flagellum-specifi 97.9 6.6E-06 2.3E-10 77.0 4.2 53 21-75 132-184 (438)
225 3eph_A TRNA isopentenyltransfe 97.9 1.4E-05 5E-10 73.2 6.1 41 48-91 2-44 (409)
226 1zu4_A FTSY; GTPase, signal re 97.9 1.4E-05 4.8E-10 71.7 5.9 41 44-84 101-143 (320)
227 3jvv_A Twitching mobility prot 97.9 6.6E-06 2.3E-10 74.9 3.5 51 24-74 92-149 (356)
228 1lw7_A Transcriptional regulat 97.9 8.1E-06 2.8E-10 74.8 4.2 31 44-74 164-196 (365)
229 1rj9_A FTSY, signal recognitio 97.9 1.2E-05 4.1E-10 71.6 5.0 39 46-84 100-140 (304)
230 1pzn_A RAD51, DNA repair and r 97.9 2E-05 6.8E-10 71.6 6.6 42 44-85 127-176 (349)
231 1n0w_A DNA repair protein RAD5 97.8 1.2E-05 4.2E-10 68.7 4.6 41 44-84 20-68 (243)
232 3kta_A Chromosome segregation 97.8 1.3E-05 4.5E-10 65.5 4.6 29 44-73 23-51 (182)
233 1nlf_A Regulatory protein REPA 97.8 9.6E-06 3.3E-10 71.3 3.5 29 45-73 27-55 (279)
234 1tf7_A KAIC; homohexamer, hexa 97.8 8.5E-06 2.9E-10 78.3 3.4 55 16-84 20-78 (525)
235 1svm_A Large T antigen; AAA+ f 97.8 8E-06 2.7E-10 74.8 3.0 30 44-73 165-194 (377)
236 4a74_A DNA repair and recombin 97.8 1.1E-05 3.8E-10 68.4 3.4 30 44-73 21-50 (231)
237 3szr_A Interferon-induced GTP- 97.8 2.4E-06 8.4E-11 83.4 -1.0 24 51-74 48-71 (608)
238 2i3b_A HCR-ntpase, human cance 97.8 1.1E-05 3.6E-10 66.8 3.0 26 48-73 1-26 (189)
239 1vma_A Cell division protein F 97.8 2.4E-05 8.1E-10 69.7 5.4 42 44-85 100-143 (306)
240 3ec2_A DNA replication protein 97.7 1.2E-05 4.1E-10 65.7 2.8 29 45-73 35-63 (180)
241 1ixz_A ATP-dependent metallopr 97.7 2.8E-05 9.7E-10 67.2 4.8 36 44-82 47-82 (254)
242 2f1r_A Molybdopterin-guanine d 97.7 1.2E-05 4.2E-10 65.2 2.1 28 48-75 2-29 (171)
243 2oap_1 GSPE-2, type II secreti 97.7 4E-06 1.4E-10 80.0 -1.1 38 44-81 256-294 (511)
244 1nij_A Hypothetical protein YJ 97.7 3E-05 1E-09 69.6 4.5 38 46-83 2-39 (318)
245 2axn_A 6-phosphofructo-2-kinas 97.7 7E-05 2.4E-09 71.7 7.1 42 44-85 31-74 (520)
246 1iy2_A ATP-dependent metallopr 97.6 3.9E-05 1.3E-09 67.3 4.9 36 44-82 71-106 (278)
247 1tf7_A KAIC; homohexamer, hexa 97.6 1.5E-05 5E-10 76.7 2.2 106 44-164 277-386 (525)
248 1wb9_A DNA mismatch repair pro 97.6 2.5E-05 8.5E-10 78.4 3.6 37 20-72 595-631 (800)
249 2px0_A Flagellar biosynthesis 97.6 3.8E-05 1.3E-09 68.1 4.2 40 46-85 103-145 (296)
250 3czq_A Putative polyphosphate 97.6 0.00028 9.7E-09 62.1 9.6 37 46-82 84-120 (304)
251 2ewv_A Twitching motility prot 97.6 5.1E-05 1.7E-09 69.6 5.0 30 45-74 133-162 (372)
252 1xjc_A MOBB protein homolog; s 97.6 5E-05 1.7E-09 61.4 4.2 37 47-83 3-41 (169)
253 1pui_A ENGB, probable GTP-bind 97.6 2.4E-05 8.3E-10 65.3 2.4 28 44-71 22-49 (210)
254 1p9r_A General secretion pathw 97.5 5.3E-05 1.8E-09 70.4 4.5 39 46-84 165-204 (418)
255 1ls1_A Signal recognition part 97.5 0.00011 3.7E-09 65.2 6.2 38 47-84 97-136 (295)
256 1ewq_A DNA mismatch repair pro 97.5 3.8E-05 1.3E-09 76.6 3.6 25 48-72 576-600 (765)
257 2ffh_A Protein (FFH); SRP54, s 97.5 0.0001 3.6E-09 68.4 6.0 38 47-84 97-136 (425)
258 2cvh_A DNA repair and recombin 97.5 6.6E-05 2.3E-09 63.1 4.3 40 44-84 16-55 (220)
259 1bif_A 6-phosphofructo-2-kinas 97.5 0.0003 1E-08 66.5 9.3 28 46-73 37-64 (469)
260 3lda_A DNA repair protein RAD5 97.5 8.3E-05 2.8E-09 68.7 4.9 41 44-84 174-222 (400)
261 1g8f_A Sulfate adenylyltransfe 97.5 9.3E-05 3.2E-09 70.3 5.2 39 46-84 393-435 (511)
262 2p67_A LAO/AO transport system 97.5 7.7E-05 2.6E-09 67.5 4.3 41 44-84 52-94 (341)
263 1np6_A Molybdopterin-guanine d 97.4 8.3E-05 2.8E-09 60.5 3.7 36 47-82 5-42 (174)
264 2w0m_A SSO2452; RECA, SSPF, un 97.4 5.8E-05 2E-09 63.9 2.9 40 44-83 19-60 (235)
265 1j8m_F SRP54, signal recogniti 97.4 0.00015 5E-09 64.3 5.3 41 44-85 95-137 (297)
266 2o8b_B DNA mismatch repair pro 97.4 7.7E-05 2.6E-09 76.8 3.9 25 48-73 789-813 (1022)
267 3qf7_A RAD50; ABC-ATPase, ATPa 97.4 7.2E-05 2.5E-09 68.4 3.3 28 44-72 20-47 (365)
268 2qnr_A Septin-2, protein NEDD5 97.3 4.4E-05 1.5E-09 67.9 1.0 38 13-71 3-41 (301)
269 1lv7_A FTSH; alpha/beta domain 97.3 0.00027 9.4E-09 61.0 5.9 36 50-86 47-82 (257)
270 2o5v_A DNA replication and rep 97.3 0.00014 4.9E-09 66.1 4.1 28 44-72 23-50 (359)
271 2qmh_A HPR kinase/phosphorylas 97.3 0.00021 7.1E-09 59.0 4.5 34 47-84 33-66 (205)
272 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.0047 1.6E-07 55.2 13.6 41 46-86 43-83 (322)
273 2qag_C Septin-7; cell cycle, c 97.3 9.3E-05 3.2E-09 68.7 2.4 23 51-73 34-56 (418)
274 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00028 9.7E-09 66.9 5.4 40 44-86 62-101 (499)
275 1oix_A RAS-related protein RAB 97.2 0.00018 6E-09 59.2 3.5 26 47-72 28-53 (191)
276 3ice_A Transcription terminati 97.2 0.00031 1E-08 63.9 5.1 54 18-72 131-198 (422)
277 1qhl_A Protein (cell division 97.2 3.3E-05 1.1E-09 65.7 -1.2 26 49-74 28-53 (227)
278 3b9p_A CG5977-PA, isoform A; A 97.2 0.0027 9.1E-08 55.9 10.9 38 47-85 53-90 (297)
279 1in4_A RUVB, holliday junction 97.2 0.00019 6.4E-09 64.8 3.3 36 48-84 51-86 (334)
280 3kl4_A SRP54, signal recogniti 97.1 0.00032 1.1E-08 65.3 4.7 40 46-85 95-136 (433)
281 3tvt_A Disks large 1 tumor sup 97.1 0.00032 1.1E-08 61.8 4.5 90 146-248 186-277 (292)
282 3tqf_A HPR(Ser) kinase; transf 97.1 0.00047 1.6E-08 55.4 4.9 34 47-84 15-48 (181)
283 2yv5_A YJEQ protein; hydrolase 97.1 0.00021 7E-09 63.6 3.2 28 46-74 163-190 (302)
284 1u0l_A Probable GTPase ENGC; p 97.1 0.00014 4.7E-09 64.7 2.0 28 47-74 168-195 (301)
285 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00037 1.3E-08 55.1 4.0 25 48-72 23-47 (149)
286 2rcn_A Probable GTPase ENGC; Y 97.1 0.00018 6.1E-09 65.2 2.4 27 47-73 214-240 (358)
287 2f9l_A RAB11B, member RAS onco 97.1 0.00033 1.1E-08 57.9 3.7 25 47-71 4-28 (199)
288 4b4t_J 26S protease regulatory 97.1 0.0029 1E-07 58.0 10.2 41 45-86 179-219 (405)
289 1e69_A Chromosome segregation 97.0 0.00029 1E-08 63.1 3.3 28 44-72 21-48 (322)
290 1kjw_A Postsynaptic density pr 97.0 0.0014 4.7E-08 57.9 7.5 175 45-247 102-281 (295)
291 3dm5_A SRP54, signal recogniti 97.0 0.00074 2.5E-08 62.9 6.0 40 47-86 99-140 (443)
292 2zr9_A Protein RECA, recombina 97.0 0.00062 2.1E-08 61.7 5.2 41 44-84 57-99 (349)
293 2www_A Methylmalonic aciduria 97.0 0.00052 1.8E-08 62.2 4.4 40 46-85 72-113 (349)
294 1p6x_A Thymidine kinase; P-loo 97.0 0.00039 1.3E-08 62.4 3.5 31 45-75 4-34 (334)
295 2dr3_A UPF0273 protein PH0284; 97.0 0.00066 2.3E-08 57.8 4.6 41 44-84 19-61 (247)
296 3m6a_A ATP-dependent protease 96.9 0.00051 1.7E-08 66.1 4.3 36 47-83 107-142 (543)
297 2h17_A ADP-ribosylation factor 96.9 0.00035 1.2E-08 56.7 2.6 42 29-70 2-43 (181)
298 1t9h_A YLOQ, probable GTPase E 96.9 0.00011 3.6E-09 65.4 -0.9 30 44-73 169-198 (307)
299 1of1_A Thymidine kinase; trans 96.9 0.00062 2.1E-08 61.9 3.8 34 46-79 47-80 (376)
300 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0014 4.8E-08 56.4 6.0 40 46-86 37-76 (262)
301 4b4t_H 26S protease regulatory 96.9 0.0046 1.6E-07 57.6 9.7 41 45-86 240-280 (467)
302 2vf7_A UVRA2, excinuclease ABC 96.9 0.00028 9.5E-09 71.0 1.6 33 19-66 22-54 (842)
303 1e2k_A Thymidine kinase; trans 96.8 0.00055 1.9E-08 61.3 3.3 33 47-79 3-35 (331)
304 2ce7_A Cell division protein F 96.8 0.0011 3.9E-08 62.4 5.4 40 44-86 47-86 (476)
305 3cf0_A Transitional endoplasmi 96.8 0.00073 2.5E-08 59.9 3.8 29 45-73 46-74 (301)
306 3t15_A Ribulose bisphosphate c 96.8 0.001 3.5E-08 58.8 4.6 37 45-82 33-69 (293)
307 2h57_A ADP-ribosylation factor 96.8 0.00057 2E-08 55.8 2.8 41 30-70 3-43 (190)
308 1w1w_A Structural maintenance 96.8 0.00081 2.8E-08 62.8 3.9 30 45-74 23-52 (430)
309 3pfi_A Holliday junction ATP-d 96.8 0.011 3.8E-07 52.8 11.4 35 48-83 55-89 (338)
310 3hr8_A Protein RECA; alpha and 96.7 0.0015 5E-08 59.3 5.2 43 44-86 57-101 (356)
311 1jbk_A CLPB protein; beta barr 96.7 0.001 3.4E-08 53.9 3.8 28 46-73 41-68 (195)
312 2oil_A CATX-8, RAS-related pro 96.7 0.001 3.5E-08 54.4 3.7 35 36-70 13-47 (193)
313 2ygr_A Uvrabc system protein A 96.7 0.00038 1.3E-08 70.7 1.3 31 21-66 34-64 (993)
314 3qks_A DNA double-strand break 96.7 0.0013 4.4E-08 54.7 4.4 26 48-73 23-48 (203)
315 3pih_A Uvrabc system protein A 96.7 0.00035 1.2E-08 70.8 1.0 30 21-65 12-41 (916)
316 2r6f_A Excinuclease ABC subuni 96.7 0.00039 1.3E-08 70.4 1.3 31 21-66 32-62 (972)
317 2xxa_A Signal recognition part 96.7 0.0023 7.8E-08 59.7 6.4 41 46-86 98-141 (433)
318 1udx_A The GTP-binding protein 96.7 0.00033 1.1E-08 64.9 0.7 28 44-71 153-180 (416)
319 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.00088 3E-08 61.5 3.5 27 44-70 16-42 (392)
320 3h4m_A Proteasome-activating n 96.7 0.0014 4.8E-08 57.3 4.7 40 46-86 49-88 (285)
321 1c9k_A COBU, adenosylcobinamid 96.7 0.0011 3.7E-08 53.9 3.6 33 50-84 1-33 (180)
322 2w58_A DNAI, primosome compone 96.7 0.001 3.5E-08 55.0 3.5 25 49-73 55-79 (202)
323 2wji_A Ferrous iron transport 96.7 0.00089 3E-08 53.4 3.0 23 48-70 3-25 (165)
324 2gj8_A MNME, tRNA modification 96.7 0.0009 3.1E-08 53.9 3.1 24 47-70 3-26 (172)
325 3vfd_A Spastin; ATPase, microt 96.7 0.0082 2.8E-07 55.1 9.9 37 48-85 148-184 (389)
326 2ew1_A RAS-related protein RAB 96.7 0.00099 3.4E-08 55.2 3.4 35 36-70 14-48 (201)
327 3bos_A Putative DNA replicatio 96.6 0.0011 3.7E-08 56.1 3.5 37 47-83 51-89 (242)
328 3p32_A Probable GTPase RV1496/ 96.6 0.0024 8.3E-08 57.9 6.0 40 45-84 76-117 (355)
329 3qkt_A DNA double-strand break 96.6 0.0011 3.9E-08 59.7 3.7 24 48-71 23-46 (339)
330 2zan_A Vacuolar protein sortin 96.6 0.023 7.9E-07 53.1 12.8 39 47-85 166-204 (444)
331 3k1j_A LON protease, ATP-depen 96.6 0.00045 1.5E-08 67.4 1.0 32 44-75 56-87 (604)
332 3ihw_A Centg3; RAS, centaurin, 96.6 0.0017 5.8E-08 52.8 4.3 26 45-70 17-42 (184)
333 2wjg_A FEOB, ferrous iron tran 96.6 0.0014 4.9E-08 53.1 3.8 24 47-70 6-29 (188)
334 1m2o_B GTP-binding protein SAR 96.6 0.0013 4.4E-08 53.8 3.4 26 44-70 20-45 (190)
335 2a5j_A RAS-related protein RAB 96.6 0.0015 5.2E-08 53.3 3.7 35 36-70 9-43 (191)
336 1z06_A RAS-related protein RAB 96.5 0.0016 5.6E-08 53.0 3.9 27 44-70 16-42 (189)
337 3t34_A Dynamin-related protein 96.5 0.0023 7.8E-08 58.2 5.2 22 50-71 36-57 (360)
338 2p65_A Hypothetical protein PF 96.5 0.0012 4.1E-08 53.3 3.0 27 47-73 42-68 (187)
339 2o52_A RAS-related protein RAB 96.5 0.0013 4.3E-08 54.3 3.1 37 34-70 11-47 (200)
340 1osn_A Thymidine kinase, VZV-T 96.5 0.00085 2.9E-08 60.3 2.1 33 44-76 8-41 (341)
341 1sxj_C Activator 1 40 kDa subu 96.5 0.00042 1.4E-08 62.5 0.2 24 51-74 49-72 (340)
342 1ega_A Protein (GTP-binding pr 96.5 0.0012 4.2E-08 58.5 3.1 25 46-70 6-30 (301)
343 4fcw_A Chaperone protein CLPB; 96.5 0.0019 6.5E-08 57.1 4.4 38 48-85 47-86 (311)
344 2wsm_A Hydrogenase expression/ 96.5 0.0036 1.2E-07 52.3 5.8 38 46-83 28-66 (221)
345 2v3c_C SRP54, signal recogniti 96.5 0.0013 4.5E-08 61.3 3.1 41 46-86 97-139 (432)
346 1v5w_A DMC1, meiotic recombina 96.4 0.0034 1.2E-07 56.7 5.7 41 44-84 118-166 (343)
347 2j37_W Signal recognition part 96.4 0.0029 1E-07 60.0 5.4 40 46-85 99-140 (504)
348 1tue_A Replication protein E1; 96.4 0.0016 5.3E-08 54.0 3.0 29 45-73 55-83 (212)
349 1d2n_A N-ethylmaleimide-sensit 96.4 0.0034 1.2E-07 54.5 5.4 29 45-73 61-89 (272)
350 3n70_A Transport activator; si 96.4 0.0019 6.6E-08 50.5 3.3 26 48-73 24-49 (145)
351 1ko7_A HPR kinase/phosphatase; 96.4 0.0033 1.1E-07 55.8 5.0 34 47-84 143-176 (314)
352 2lkc_A Translation initiation 96.4 0.002 7E-08 51.6 3.4 27 44-70 4-30 (178)
353 1fnn_A CDC6P, cell division co 96.4 0.0025 8.6E-08 58.1 4.4 26 50-75 46-71 (389)
354 1sxj_E Activator 1 40 kDa subu 96.4 0.0016 5.5E-08 58.8 3.0 22 51-72 39-60 (354)
355 2fn4_A P23, RAS-related protei 96.4 0.0026 8.9E-08 51.0 3.9 25 46-70 7-31 (181)
356 1f6b_A SAR1; gtpases, N-termin 96.3 0.0013 4.4E-08 54.3 2.0 26 44-70 22-47 (198)
357 1ofh_A ATP-dependent HSL prote 96.3 0.0028 9.4E-08 55.9 4.3 37 48-85 50-86 (310)
358 2fv8_A H6, RHO-related GTP-bin 96.3 0.0019 6.4E-08 53.5 3.1 27 44-70 21-47 (207)
359 1njg_A DNA polymerase III subu 96.3 0.0024 8.3E-08 53.7 3.7 26 48-73 45-70 (250)
360 2f7s_A C25KG, RAS-related prot 96.3 0.0023 8E-08 53.3 3.6 35 36-70 13-47 (217)
361 4b4t_L 26S protease subunit RP 96.3 0.0048 1.6E-07 57.4 5.9 41 45-86 212-252 (437)
362 4b4t_K 26S protease regulatory 96.3 0.0049 1.7E-07 57.2 5.9 41 45-86 203-243 (428)
363 2zej_A Dardarin, leucine-rich 96.3 0.0015 5E-08 53.2 2.1 22 49-70 3-24 (184)
364 1upt_A ARL1, ADP-ribosylation 96.3 0.0035 1.2E-07 49.7 4.4 26 45-70 4-29 (171)
365 2il1_A RAB12; G-protein, GDP, 96.3 0.0023 8E-08 52.3 3.3 26 45-70 23-48 (192)
366 4ad8_A DNA repair protein RECN 96.3 0.0011 3.9E-08 63.3 1.5 29 44-73 57-85 (517)
367 3rhf_A Putative polyphosphate 96.3 0.053 1.8E-06 47.0 11.8 36 47-82 74-109 (289)
368 2gco_A H9, RHO-related GTP-bin 96.2 0.0032 1.1E-07 51.9 4.0 26 45-70 22-47 (201)
369 1ypw_A Transitional endoplasmi 96.2 0.0024 8E-08 64.4 3.7 37 45-82 235-271 (806)
370 2ged_A SR-beta, signal recogni 96.2 0.0029 9.9E-08 51.5 3.7 26 46-71 46-71 (193)
371 3con_A GTPase NRAS; structural 96.2 0.0027 9.3E-08 51.6 3.5 24 47-70 20-43 (190)
372 3czp_A Putative polyphosphate 96.2 0.016 5.5E-07 54.7 9.1 38 45-82 40-77 (500)
373 4b4t_M 26S protease regulatory 96.2 0.0052 1.8E-07 57.1 5.6 41 45-86 212-252 (434)
374 2xkx_A Disks large homolog 4; 96.2 0.02 6.8E-07 57.0 10.2 174 46-246 529-706 (721)
375 3lxx_A GTPase IMAP family memb 96.2 0.0026 8.8E-08 54.1 3.4 26 46-71 27-52 (239)
376 3clv_A RAB5 protein, putative; 96.2 0.0041 1.4E-07 50.8 4.5 27 45-71 4-30 (208)
377 1z2a_A RAS-related protein RAB 96.2 0.0034 1.2E-07 49.6 3.8 24 47-70 4-27 (168)
378 2dyk_A GTP-binding protein; GT 96.2 0.0036 1.2E-07 49.1 3.9 22 49-70 2-23 (161)
379 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0028 9.7E-08 50.6 3.3 25 46-70 5-29 (177)
380 3lxw_A GTPase IMAP family memb 96.2 0.0027 9.3E-08 54.5 3.3 25 46-70 19-43 (247)
381 2orw_A Thymidine kinase; TMTK, 96.2 0.003 1E-07 51.7 3.4 25 48-72 3-27 (184)
382 1yrb_A ATP(GTP)binding protein 96.2 0.0072 2.5E-07 51.9 6.0 39 46-84 12-51 (262)
383 3c5c_A RAS-like protein 12; GD 96.2 0.0035 1.2E-07 51.0 3.9 25 46-70 19-43 (187)
384 1l8q_A Chromosomal replication 96.2 0.0028 9.5E-08 56.6 3.4 37 47-83 36-74 (324)
385 3tsz_A Tight junction protein 96.2 0.045 1.5E-06 50.2 11.6 94 146-248 286-381 (391)
386 3dz8_A RAS-related protein RAB 96.2 0.002 6.7E-08 52.6 2.2 27 45-71 20-46 (191)
387 1kao_A RAP2A; GTP-binding prot 96.2 0.0038 1.3E-07 49.1 3.9 23 48-70 3-25 (167)
388 3syl_A Protein CBBX; photosynt 96.1 0.003 1E-07 55.8 3.6 28 46-73 65-92 (309)
389 1ky3_A GTP-binding protein YPT 96.1 0.0038 1.3E-07 50.0 3.9 25 46-70 6-30 (182)
390 2ce2_X GTPase HRAS; signaling 96.1 0.0034 1.2E-07 49.3 3.5 22 49-70 4-25 (166)
391 2chg_A Replication factor C sm 96.1 0.0032 1.1E-07 52.1 3.5 22 51-72 41-62 (226)
392 2gf0_A GTP-binding protein DI- 96.1 0.0042 1.4E-07 50.7 4.1 26 45-70 5-30 (199)
393 2qby_A CDC6 homolog 1, cell di 96.1 0.0026 9E-08 57.8 3.0 28 46-73 43-70 (386)
394 2a9k_A RAS-related protein RAL 96.1 0.004 1.4E-07 50.1 3.8 25 46-70 16-40 (187)
395 2r62_A Cell division protease 96.1 0.0018 6E-08 56.1 1.7 23 51-73 47-69 (268)
396 2b8t_A Thymidine kinase; deoxy 96.1 0.0036 1.2E-07 52.8 3.6 28 46-73 10-37 (223)
397 1z0f_A RAB14, member RAS oncog 96.1 0.0039 1.4E-07 49.8 3.7 26 45-70 12-37 (179)
398 1um8_A ATP-dependent CLP prote 96.1 0.0053 1.8E-07 56.0 4.9 36 47-83 71-106 (376)
399 3shw_A Tight junction protein 96.1 0.015 5.2E-07 54.4 8.0 98 146-252 278-377 (468)
400 3hws_A ATP-dependent CLP prote 96.1 0.0035 1.2E-07 56.9 3.7 35 47-82 50-84 (363)
401 1u8z_A RAS-related protein RAL 96.1 0.0044 1.5E-07 48.8 3.8 23 48-70 4-26 (168)
402 1g41_A Heat shock protein HSLU 96.1 0.0052 1.8E-07 57.2 4.8 33 49-82 51-83 (444)
403 2p5s_A RAS and EF-hand domain 96.0 0.0044 1.5E-07 50.9 3.9 26 45-70 25-50 (199)
404 2hf9_A Probable hydrogenase ni 96.0 0.0042 1.4E-07 52.1 3.9 38 46-83 36-74 (226)
405 3k53_A Ferrous iron transport 96.0 0.0033 1.1E-07 54.7 3.2 24 48-71 3-26 (271)
406 3kkq_A RAS-related protein M-R 96.0 0.0052 1.8E-07 49.4 4.2 26 45-70 15-40 (183)
407 2gf9_A RAS-related protein RAB 96.0 0.0041 1.4E-07 50.5 3.6 25 46-70 20-44 (189)
408 1knx_A Probable HPR(Ser) kinas 96.0 0.004 1.4E-07 55.1 3.7 34 47-84 146-179 (312)
409 3oes_A GTPase rhebl1; small GT 96.0 0.004 1.4E-07 51.2 3.5 25 46-70 22-46 (201)
410 3d8b_A Fidgetin-like protein 1 96.0 0.0046 1.6E-07 56.1 4.2 39 47-86 116-154 (357)
411 3tw8_B RAS-related protein RAB 96.0 0.0039 1.3E-07 49.9 3.3 26 45-70 6-31 (181)
412 3auy_A DNA double-strand break 96.0 0.0037 1.3E-07 57.0 3.5 23 48-70 25-47 (371)
413 1c1y_A RAS-related protein RAP 96.0 0.005 1.7E-07 48.5 3.8 23 48-70 3-25 (167)
414 1z08_A RAS-related protein RAB 96.0 0.0044 1.5E-07 49.1 3.5 25 46-70 4-28 (170)
415 2z43_A DNA repair and recombin 96.0 0.0044 1.5E-07 55.4 3.8 41 44-84 103-151 (324)
416 1vg8_A RAS-related protein RAB 96.0 0.0049 1.7E-07 50.7 3.9 25 46-70 6-30 (207)
417 3tkl_A RAS-related protein RAB 96.0 0.0048 1.6E-07 50.2 3.7 25 46-70 14-38 (196)
418 1xx6_A Thymidine kinase; NESG, 96.0 0.0068 2.3E-07 49.8 4.6 28 45-72 5-32 (191)
419 2erx_A GTP-binding protein DI- 96.0 0.0043 1.5E-07 49.1 3.4 23 48-70 3-25 (172)
420 1g16_A RAS-related protein SEC 95.9 0.0047 1.6E-07 48.8 3.5 23 48-70 3-25 (170)
421 2r6a_A DNAB helicase, replicat 95.9 0.0032 1.1E-07 59.2 2.8 41 43-83 198-241 (454)
422 1z0j_A RAB-22, RAS-related pro 95.9 0.0044 1.5E-07 49.0 3.3 24 47-70 5-28 (170)
423 2hxs_A RAB-26, RAS-related pro 95.9 0.0056 1.9E-07 48.9 3.9 25 46-70 4-28 (178)
424 1gwn_A RHO-related GTP-binding 95.9 0.0047 1.6E-07 51.2 3.5 36 35-70 14-50 (205)
425 3llu_A RAS-related GTP-binding 95.9 0.0031 1.1E-07 51.7 2.3 30 41-70 13-42 (196)
426 3bc1_A RAS-related protein RAB 95.9 0.0052 1.8E-07 49.7 3.7 25 46-70 9-33 (195)
427 1svi_A GTP-binding protein YSX 95.9 0.0044 1.5E-07 50.5 3.2 25 46-70 21-45 (195)
428 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0049 1.7E-07 49.7 3.5 24 47-70 3-26 (189)
429 2xtp_A GTPase IMAP family memb 95.9 0.0043 1.5E-07 53.4 3.3 26 45-70 19-44 (260)
430 3eie_A Vacuolar protein sortin 95.9 0.0053 1.8E-07 54.8 4.0 35 47-82 50-84 (322)
431 1ek0_A Protein (GTP-binding pr 95.9 0.0048 1.6E-07 48.7 3.3 22 49-70 4-25 (170)
432 2nzj_A GTP-binding protein REM 95.9 0.0059 2E-07 48.6 3.8 24 47-70 3-26 (175)
433 3cf2_A TER ATPase, transitiona 95.8 0.013 4.3E-07 58.7 6.8 29 45-73 235-263 (806)
434 2bme_A RAB4A, RAS-related prot 95.8 0.0053 1.8E-07 49.5 3.4 25 46-70 8-32 (186)
435 1nrj_B SR-beta, signal recogni 95.8 0.0056 1.9E-07 51.0 3.6 26 46-71 10-35 (218)
436 2z4s_A Chromosomal replication 95.8 0.0047 1.6E-07 57.7 3.4 25 48-72 130-154 (440)
437 4ag6_A VIRB4 ATPase, type IV s 95.8 0.0046 1.6E-07 56.8 3.3 36 48-83 35-72 (392)
438 3uk6_A RUVB-like 2; hexameric 95.8 0.0048 1.6E-07 55.9 3.3 36 47-82 69-105 (368)
439 2y8e_A RAB-protein 6, GH09086P 95.8 0.0051 1.8E-07 49.1 3.2 23 48-70 14-36 (179)
440 2bjv_A PSP operon transcriptio 95.8 0.0058 2E-07 52.8 3.7 37 48-84 29-67 (265)
441 2g6b_A RAS-related protein RAB 95.8 0.0065 2.2E-07 48.6 3.7 25 46-70 8-32 (180)
442 1sxj_D Activator 1 41 kDa subu 95.8 0.0053 1.8E-07 55.2 3.5 23 51-73 61-83 (353)
443 3pqc_A Probable GTP-binding pr 95.8 0.0048 1.6E-07 50.1 2.9 25 46-70 21-45 (195)
444 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0061 2.1E-07 49.3 3.5 25 46-70 5-29 (184)
445 1fzq_A ADP-ribosylation factor 95.8 0.0063 2.2E-07 49.2 3.6 25 46-70 14-38 (181)
446 4b4t_I 26S protease regulatory 95.8 0.0078 2.7E-07 55.5 4.5 41 45-86 213-253 (437)
447 2efe_B Small GTP-binding prote 95.8 0.0062 2.1E-07 48.8 3.5 24 47-70 11-34 (181)
448 1hqc_A RUVB; extended AAA-ATPa 95.8 0.0073 2.5E-07 53.6 4.3 37 47-84 37-73 (324)
449 2qp9_X Vacuolar protein sortin 95.7 0.0057 2E-07 55.4 3.6 26 48-73 84-109 (355)
450 2fh5_B SR-beta, signal recogni 95.7 0.0055 1.9E-07 50.8 3.2 25 46-70 5-29 (214)
451 1r2q_A RAS-related protein RAB 95.7 0.006 2E-07 48.2 3.3 24 47-70 5-28 (170)
452 3bwd_D RAC-like GTP-binding pr 95.7 0.0063 2.1E-07 48.8 3.5 25 46-70 6-30 (182)
453 2v1u_A Cell division control p 95.7 0.0051 1.7E-07 55.9 3.2 27 46-72 42-68 (387)
454 1u94_A RECA protein, recombina 95.7 0.0088 3E-07 54.2 4.7 41 45-85 60-102 (356)
455 2r2a_A Uncharacterized protein 95.7 0.0063 2.2E-07 50.4 3.3 24 47-70 4-27 (199)
456 2iwr_A Centaurin gamma 1; ANK 95.7 0.0068 2.3E-07 48.5 3.5 25 46-70 5-29 (178)
457 1moz_A ARL1, ADP-ribosylation 95.7 0.0046 1.6E-07 49.7 2.5 25 46-70 16-40 (183)
458 1r8s_A ADP-ribosylation factor 95.7 0.0065 2.2E-07 47.8 3.3 21 50-70 2-22 (164)
459 1zd9_A ADP-ribosylation factor 95.7 0.0071 2.4E-07 49.1 3.6 25 46-70 20-44 (188)
460 4bas_A ADP-ribosylation factor 95.7 0.0069 2.4E-07 49.4 3.5 27 44-70 13-39 (199)
461 2bov_A RAla, RAS-related prote 95.7 0.0086 2.9E-07 49.1 4.1 24 47-70 13-36 (206)
462 3iev_A GTP-binding protein ERA 95.7 0.0055 1.9E-07 54.4 3.1 27 44-70 6-32 (308)
463 2j9r_A Thymidine kinase; TK1, 95.7 0.0081 2.8E-07 50.1 3.8 29 45-73 25-53 (214)
464 3q85_A GTP-binding protein REM 95.7 0.0063 2.2E-07 48.1 3.1 22 49-70 3-24 (169)
465 3q72_A GTP-binding protein RAD 95.6 0.0054 1.8E-07 48.4 2.7 22 49-70 3-24 (166)
466 3b1v_A Ferrous iron uptake tra 95.6 0.0061 2.1E-07 53.1 3.2 23 48-70 3-25 (272)
467 2atv_A RERG, RAS-like estrogen 95.6 0.0091 3.1E-07 48.7 4.1 25 46-70 26-50 (196)
468 3cbq_A GTP-binding protein REM 95.6 0.0061 2.1E-07 50.0 3.0 25 46-70 21-45 (195)
469 3t5g_A GTP-binding protein RHE 95.6 0.0061 2.1E-07 48.9 2.9 24 47-70 5-28 (181)
470 1sxj_A Activator 1 95 kDa subu 95.6 0.01 3.4E-07 56.7 4.8 27 47-73 76-102 (516)
471 3t1o_A Gliding protein MGLA; G 95.6 0.0066 2.3E-07 49.3 3.1 26 47-72 13-38 (198)
472 3reg_A RHO-like small GTPase; 95.6 0.0077 2.6E-07 49.1 3.5 25 46-70 21-45 (194)
473 3czp_A Putative polyphosphate 95.6 0.14 4.7E-06 48.4 12.3 38 45-82 297-334 (500)
474 2qby_B CDC6 homolog 3, cell di 95.6 0.0072 2.5E-07 55.0 3.6 27 46-72 43-69 (384)
475 3pvs_A Replication-associated 95.5 0.0074 2.5E-07 56.5 3.6 25 49-73 51-75 (447)
476 1ksh_A ARF-like protein 2; sma 95.5 0.0092 3.2E-07 48.1 3.7 25 46-70 16-40 (186)
477 2j0v_A RAC-like GTP-binding pr 95.5 0.01 3.5E-07 49.1 4.0 25 46-70 7-31 (212)
478 2fg5_A RAB-22B, RAS-related pr 95.5 0.0079 2.7E-07 49.0 3.2 25 46-70 21-45 (192)
479 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.0088 3E-07 48.1 3.5 24 47-70 4-27 (186)
480 2qgz_A Helicase loader, putati 95.5 0.0086 2.9E-07 53.2 3.6 26 48-73 152-177 (308)
481 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0085 2.9E-07 49.3 3.4 25 46-70 6-30 (206)
482 3kfv_A Tight junction protein 95.5 0.23 7.9E-06 43.7 12.6 93 146-248 195-290 (308)
483 1zj6_A ADP-ribosylation factor 95.5 0.0097 3.3E-07 48.1 3.7 25 46-70 14-38 (187)
484 2qu8_A Putative nucleolar GTP- 95.5 0.0084 2.9E-07 50.4 3.4 25 46-70 27-51 (228)
485 1mky_A Probable GTP-binding pr 95.4 0.0086 2.9E-07 55.9 3.6 25 47-71 179-203 (439)
486 2cxx_A Probable GTP-binding pr 95.4 0.0057 1.9E-07 49.4 2.1 21 50-70 3-23 (190)
487 2hup_A RAS-related protein RAB 95.4 0.009 3.1E-07 49.2 3.4 25 46-70 27-51 (201)
488 2zts_A Putative uncharacterize 95.4 0.0065 2.2E-07 51.6 2.6 39 45-83 27-68 (251)
489 3co5_A Putative two-component 95.4 0.0038 1.3E-07 48.6 0.9 23 50-72 29-51 (143)
490 2qtf_A Protein HFLX, GTP-bindi 95.4 0.0065 2.2E-07 55.3 2.6 22 49-70 180-201 (364)
491 3bh0_A DNAB-like replicative h 95.4 0.0088 3E-07 53.3 3.3 40 44-83 64-105 (315)
492 3pxi_A Negative regulator of g 95.4 0.085 2.9E-06 52.7 10.8 37 50-86 523-561 (758)
493 2r44_A Uncharacterized protein 95.4 0.0076 2.6E-07 53.9 2.9 33 48-81 46-78 (331)
494 1zbd_A Rabphilin-3A; G protein 95.3 0.0091 3.1E-07 49.0 3.2 25 46-70 6-30 (203)
495 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.0082 2.8E-07 53.3 3.0 27 45-71 120-146 (331)
496 2c9o_A RUVB-like 1; hexameric 95.3 0.01 3.5E-07 55.7 3.8 38 47-84 62-100 (456)
497 2i1q_A DNA repair and recombin 95.3 0.0077 2.6E-07 53.7 2.8 28 44-71 94-121 (322)
498 1x3s_A RAS-related protein RAB 95.3 0.008 2.7E-07 48.8 2.7 24 47-70 14-37 (195)
499 3cph_A RAS-related protein SEC 95.3 0.012 4.2E-07 48.5 3.9 25 46-70 18-42 (213)
500 3q3j_B RHO-related GTP-binding 95.3 0.013 4.3E-07 48.9 3.9 26 45-70 24-49 (214)
No 1
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.95 E-value=9.1e-27 Score=203.65 Aligned_cols=214 Identities=49% Similarity=0.892 Sum_probs=169.5
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-------CCEEEEeCCCCCCCCCHHH
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-------QRVVLVNQDSFYHNLTEQE 93 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-------~~~~~l~~D~~~~~l~~~~ 93 (338)
..|+|||| +.+++.+|||+|+|||||||+++.|++.++. ..+.++++|.+++.++..+
T Consensus 13 ~~l~~isl---------------~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 13 LGTENLYF---------------QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -------------------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHH
T ss_pred eeecceec---------------cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhH
Confidence 45899999 9999999999999999999999999998752 2466899998888888776
Q ss_pred HHHc--cccCCCCcccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCe
Q 019592 94 LARV--HEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNM 171 (338)
Q Consensus 94 ~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~ 171 (338)
+... ..+.|+.|..++.+.+.+.|+.+..+.....+.+|.++.+++.. .....+++++|+||+..+.+..+.+.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~ 156 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHL 156 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSE
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCe
Confidence 5432 34457777778888888888888776667778999999988754 35567789999999999888888888999
Q ss_pred EEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhcc
Q 019592 172 KIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (338)
Q Consensus 172 ~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~ 251 (338)
+||+.++.+.+++|++.|+. .+|.+.+....+|.....+.++.|+.|.++.||+||++..+|..+++.+.+++.+.+..
T Consensus 157 ~i~v~th~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 157 RLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp EEEEECCHHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence 99999999999999999875 67788999999999888889999999999999999977656678899999999887754
No 2
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.94 E-value=5.3e-26 Score=194.17 Aligned_cols=206 Identities=43% Similarity=0.777 Sum_probs=166.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 124 (338)
.+++.+|||+|+|||||||+++.|++.+++ .+.++++|.++.............+.|+.+..++.+.+.+.+..+..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGL 81 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCC
Confidence 467899999999999999999999998864 5899999988754321111112233466777888888889998888887
Q ss_pred ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHH
Q 019592 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (338)
.+..|.++...+++... ...+...+++++|+++.++|+.....+|.+|||+++.+.++.|++.|+...+|.+...+.+.
T Consensus 82 ~~~~~~~~~s~g~~~~~-~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 82 PVEMPVYDFRAYTRSPR-RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCEETTTTEECSS-CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CcCCCcccCcccCCCCC-eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77778777777665322 23345678999999999999999999999999999999999999998766678888888898
Q ss_pred HhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhccc
Q 019592 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQH 252 (338)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~~ 252 (338)
+.....|.|..|+.|.++.||+||+|++.+...++.+.++|.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~~~ 208 (211)
T 3asz_A 161 YLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLARM 208 (211)
T ss_dssp HHHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHTHHHHC-
T ss_pred HHHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHHHHHHhh
Confidence 888888999999999999999999998888888999999988777544
No 3
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=1.2e-25 Score=202.25 Aligned_cols=188 Identities=25% Similarity=0.409 Sum_probs=152.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHHccc-cCCCCcccccHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEK 119 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----~~~~~l~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~ 119 (338)
.+.+.+|||+|+|||||||+++.|++.+.. ..+.++++|+|+.. .......+. ..++.|.++|.+.+.+.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~--~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~ 166 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS--NAKLEKQGLMKRKGFPESYDMPSLLRVLNA 166 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC--HHHHHHTTCGGGTTSGGGBCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc--hhhhhhHHHHhhccCcccccHHHHHHHHHh
Confidence 356889999999999999999999999862 35899999999843 333332222 23667999999999999999
Q ss_pred hccCC-ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH----------HHhhcCeEEEEecCHHHHHHHHHh
Q 019592 120 LRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----------VRELMNMKIFVDTDADVRLARRIR 188 (338)
Q Consensus 120 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~----------~~~~~d~~i~l~~~~~~~~~R~~~ 188 (338)
+..+. .+..|.|++.++.+..........++++|+||++++.++. +.+.+|.+|||+++.+++++|+++
T Consensus 167 L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~ 246 (321)
T 3tqc_A 167 IKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYID 246 (321)
T ss_dssp HHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHH
T ss_pred hhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHH
Confidence 99998 8899999999998754334456788999999999987663 888999999999999999999999
Q ss_pred hCccccCC-------------------CHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCc
Q 019592 189 RDTVEKGR-------------------DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (338)
Q Consensus 189 R~~~~~~~-------------------~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (338)
|+...++. .......+|....+|.+++||.|++..||+||..+.++
T Consensus 247 Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~ 311 (321)
T 3tqc_A 247 RVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADH 311 (321)
T ss_dssp HHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTS
T ss_pred hcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCC
Confidence 98554431 12334456777777999999999999999999877554
No 4
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.93 E-value=2.1e-25 Score=200.96 Aligned_cols=189 Identities=23% Similarity=0.373 Sum_probs=150.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHh
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKL 120 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 120 (338)
.++|.+|||+|+||||||||++.|++.+.+ ..+.++++|.++...+..++..+.. .++.|.+++.+.+.+.|..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMH-RKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTT-CTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHH-hcCCChHHHHHHHHHHHHHh
Confidence 688999999999999999999999999875 3589999998874433333322211 14667888889999999988
Q ss_pred ccCCc-cccccccCcCCccCCCCccccCCCcEEEEeccccccc---hHHHhhcCeEEEEecCHHHHHHHHHhhCc-----
Q 019592 121 RHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD---SRVRELMNMKIFVDTDADVRLARRIRRDT----- 191 (338)
Q Consensus 121 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d---~~~~~~~d~~i~l~~~~~~~~~R~~~R~~----- 191 (338)
..+.. ...|.||+++.+++..+...+.+++++|+|||+.+.+ ..+.+.+|.+|||+++.+.+.+|+++|..
T Consensus 166 ~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 166 KSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp HTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred CCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 85544 6788999999999877777788999999999999964 67888999999999999999999988832
Q ss_pred cc----------cCCCHH----HHHHHHhhcCcchhhhhccCcCccccEEecCCCCc
Q 019592 192 VE----------KGRDIA----TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (338)
Q Consensus 192 ~~----------~~~~~~----~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (338)
.. .|.+.+ .+..+|.....|.+..|+.|.+..||+||+++.++
T Consensus 246 ~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~ 302 (312)
T 3aez_A 246 AFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADH 302 (312)
T ss_dssp GGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred cccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCC
Confidence 11 122333 34467888788999999999999999999887543
No 5
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.92 E-value=1.7e-24 Score=189.93 Aligned_cols=207 Identities=54% Similarity=0.910 Sum_probs=163.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------CEEEEeCCCCCCCCCHHHH--HHccccCCCCcccccHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------RVVLVNQDSFYHNLTEQEL--ARVHEYNFDHPDAFDTEKLL 114 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------~~~~l~~D~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~ 114 (338)
..+++.+|+|+|++||||||+++.|++.++.. .+.++++|+|++.+...+. ...+.+.|++|+.++.+.+.
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~ 97 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELIL 97 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHH
Confidence 34567899999999999999999999987632 4568999999987665432 34567789999999999999
Q ss_pred HHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCcccc
Q 019592 115 SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (338)
Q Consensus 115 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~ 194 (338)
+.|+.+..+..+..|.|++..+.+... .......+++|+||++.+.++.+.+.+|.+|||+++.+++++|+..|+...+
T Consensus 98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~-~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 98 KTLKEITEGKTVQIPVYDFVSHSRKEE-TVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHHHHHHTTCCEEEEEEETTTTEEEEE-EEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCeeecCccccccccCCCc-eeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence 999999888878888888877665311 1223456899999999877788888999999999999999999999875555
Q ss_pred CCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhcc
Q 019592 195 GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~ 251 (338)
+.+.+.+..+|.....+.|..++.|....||++|++..++..+++++.++|.+.+..
T Consensus 177 g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 177 GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence 677788888888777777888888988999999954333456788888888777643
No 6
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.91 E-value=2.5e-24 Score=194.23 Aligned_cols=186 Identities=25% Similarity=0.414 Sum_probs=143.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC--C--CCEEEEeCCCCCCCCCHHHHHHccc-cCCCCcccccHHHHHHHHHHh
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH--D--QRVVLVNQDSFYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKL 120 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~--~~~~~l~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l 120 (338)
+++.+|||+|+||||||||++.|++.++ + ..+.++++|+++. ........+. ..++.+..++...+...+..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~--~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH--PNQVLKERGLMKKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC--CHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC--cHHHHHhCCEeecCCCCCCccHHHHHHHHHHH
Confidence 7889999999999999999999999886 3 2378889998773 2222222111 235556778888888888888
Q ss_pred ccCCc-cccccccCcCCccCCCCccccCCCcEEEEeccccccch----------HHHhhcCeEEEEecCHHHHHHHHHhh
Q 019592 121 RHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----------RVRELMNMKIFVDTDADVRLARRIRR 189 (338)
Q Consensus 121 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~----------~~~~~~d~~i~l~~~~~~~~~R~~~R 189 (338)
..+.. +..|.|++..+.+.........+++++|+||++++.+. .+.+.+|.+|||++|.+++++|+++|
T Consensus 156 ~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R 235 (308)
T 1sq5_A 156 KSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINR 235 (308)
T ss_dssp TTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred hCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 88877 88999999998876444444567899999999998762 67889999999999999999999998
Q ss_pred Cccc---------------cCCCHH----HHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 190 DTVE---------------KGRDIA----TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 190 ~~~~---------------~~~~~~----~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
+... +|.+.+ .+..||....+|.+..|+.|.++.||+||+|+++
T Consensus 236 ~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~ 298 (308)
T 1sq5_A 236 FLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298 (308)
T ss_dssp HHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred HHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence 6211 133333 4556787777899999999999999999988754
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.87 E-value=1.4e-22 Score=180.83 Aligned_cols=185 Identities=17% Similarity=0.210 Sum_probs=136.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCCCC-CCHHHH-----HHcc--ccCCCCcccccHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHN-LTEQEL-----ARVH--EYNFDHPDAFDTEKLLS 115 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~~~~-l~~~~~-----~~~~--~~~~~~~~~~~~~~l~~ 115 (338)
.++.+|||+|++||||||+++.|++.++. ..+.++++|+||+. ...... ...+ .+.+-.|+.++.+.+.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~ 82 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER 82 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHH
Confidence 35679999999999999999999997652 23789999999963 322111 1221 23333488899888888
Q ss_pred HHHHhccCCccccccccC-----cCCccCCCCc---ccc-CCCcEEEEeccccc---cchHHHhhcCeEEEEecCHHHHH
Q 019592 116 SMEKLRHGQAVDIPNYDF-----KSYKNNVFPA---RRV-NPSDVILLEGILVF---HDSRVRELMNMKIFVDTDADVRL 183 (338)
Q Consensus 116 ~l~~l~~~~~~~~~~~~~-----~~~~~~~~~~---~~~-~~~~vlIldg~~~~---~d~~~~~~~d~~i~l~~~~~~~~ 183 (338)
.+..+..+..+..|.|++ ..+.+..... ... .+.+++|+||++.+ .+..+.+.+|++|||+++.++++
T Consensus 83 ~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 83 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHH
Confidence 888888777777777743 1222111111 122 35789999999987 35667889999999999999999
Q ss_pred HHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCccccE------EecCC
Q 019592 184 ARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI------IIPRG 231 (338)
Q Consensus 184 ~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~------iI~~~ 231 (338)
+|+++|+...+|.+.+.....+... .|.|..|+.|.++.||+ +|+|+
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred HHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCC
Confidence 9999999878888888888888777 88999999999999999 67665
No 8
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.87 E-value=9.7e-22 Score=167.39 Aligned_cols=181 Identities=20% Similarity=0.255 Sum_probs=141.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHHcccc-CCCCcccccHHHHHHHHHHhc
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEKLR 121 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~ 121 (338)
.+++.+|+|+|+||||||||++.|++.+.+. ...++++|+++ +........+.+ ..+.+..++...+.+.+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH--LDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB--CCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc--CCHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 3679999999999999999999999999742 47889999876 333333322221 134577888888888899888
Q ss_pred cCCccccccccCcCCccCCCCccccCC-CcEEEEeccccccch----HHHhhcCeEEEEecCHHHHHHHHHhhCccccCC
Q 019592 122 HGQAVDIPNYDFKSYKNNVFPARRVNP-SDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (338)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vlIldg~~~~~d~----~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~ 196 (338)
.++.+..|.++++....... ...+.. .+++|+||++.++|. .+.+.+|.+|||+++.+.+++|+++|. ..+|.
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~-~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~ 174 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAG-AAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGL 174 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTC
T ss_pred cCCceecccCCccccCCCCC-ceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCC
Confidence 88888889998887765322 223334 489999999986653 457889999999999999999999995 56688
Q ss_pred CHHHHHHHHhhcCcchhhhhccCcCccccEEecC
Q 019592 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 230 (338)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~ 230 (338)
+.+...+.|.....|.+ .|+.|.+..||+||+.
T Consensus 175 t~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 175 NHDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp CHHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred CHHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 89999998887667766 7999999999999963
No 9
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.85 E-value=1.3e-21 Score=174.45 Aligned_cols=186 Identities=18% Similarity=0.236 Sum_probs=134.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----CEEEE-eCCCCCCCCCHHHHHHcc------ccCCCCcccccHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----RVVLV-NQDSFYHNLTEQELARVH------EYNFDHPDAFDTEK 112 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----~~~~l-~~D~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~ 112 (338)
..+++.+|||+|++||||||+++.|++.+++. ....+ ++|+||......++.... ...++.|++++...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 34678999999999999999999999998742 24444 999998543333322221 11245689999999
Q ss_pred HHHHHHHhccC------CccccccccCcC----CccCCCC-ccccCCCcEEEEeccccccchH-----------------
Q 019592 113 LLSSMEKLRHG------QAVDIPNYDFKS----YKNNVFP-ARRVNPSDVILLEGILVFHDSR----------------- 164 (338)
Q Consensus 113 l~~~l~~l~~~------~~~~~~~~~~~~----~~~~~~~-~~~~~~~~vlIldg~~~~~d~~----------------- 164 (338)
+.+.+..+..+ ..+..|.|++.. +++...+ ...+ +++++|+||+++++++.
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~ 185 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV 185 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHH
Confidence 99999999888 557788887777 7776543 2334 89999999999987764
Q ss_pred ----------HHhhcCeE---EEEecCHHHHHHH-HHhh--C-cccc--CCCHHHHHHHHhhcCcchhhhhccCcC----
Q 019592 165 ----------VRELMNMK---IFVDTDADVRLAR-RIRR--D-TVEK--GRDIATVLDQYSKFVKPAFDDFILPTK---- 221 (338)
Q Consensus 165 ----------~~~~~d~~---i~l~~~~~~~~~R-~~~R--~-~~~~--~~~~~~~~~~~~~~~~p~~~~~i~~~~---- 221 (338)
+++.+|+. |||+++.+.++.| ++.| + ..++ |.+.+.+ .+|....+|.|+.|+.|..
T Consensus 186 n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~ 264 (290)
T 1odf_A 186 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSES 264 (290)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhcc
Confidence 24446777 9999966666655 6666 3 1223 7777775 6778888999888886632
Q ss_pred --ccccEEecCC
Q 019592 222 --KYADIIIPRG 231 (338)
Q Consensus 222 --~~aD~iI~~~ 231 (338)
+.||+|+..+
T Consensus 265 ~~~~adlvl~~~ 276 (290)
T 1odf_A 265 LGSIATLTLGID 276 (290)
T ss_dssp SSSSEEEEEEEC
T ss_pred CCCCCCEEEEEC
Confidence 3689988655
No 10
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.80 E-value=6.2e-20 Score=165.55 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=117.7
Q ss_pred EEEEeCCCCCCCCCHHHHHHc-----cccCCCCcccccHHHHHHHHHHhccC----------------------------
Q 019592 77 VVLVNQDSFYHNLTEQELARV-----HEYNFDHPDAFDTEKLLSSMEKLRHG---------------------------- 123 (338)
Q Consensus 77 ~~~l~~D~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~l~~~---------------------------- 123 (338)
+.++++|+|| ++...+..+ ....++.|.+||...+.+.++.+..+
T Consensus 156 v~vi~mDgFh--~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 233 (359)
T 2ga8_A 156 AQIVPMDGFH--LSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQT 233 (359)
T ss_dssp EEEEEGGGGB--CCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETT
T ss_pred EEEEecCcCC--CCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCccccccccccccccccccccccccccc
Confidence 5688999999 444444332 24457889999999999988888766
Q ss_pred -CccccccccCcCCccCCCCccccCCCcEEEEeccccccch----HHHhhcC-----eEEEEecCHHHHHHHHHhhCccc
Q 019592 124 -QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMN-----MKIFVDTDADVRLARRIRRDTVE 193 (338)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~----~~~~~~d-----~~i~l~~~~~~~~~R~~~R~~~~ 193 (338)
..+..|.|++..+.+..........++++|+||.+++++. .+.+.+| ++|||+++.+++++|+++|+. .
T Consensus 234 ~~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~ 312 (359)
T 2ga8_A 234 IPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-Q 312 (359)
T ss_dssp CCCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-H
T ss_pred CceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-c
Confidence 4578999999998876443333445799999997777662 4567898 899999999999999999973 4
Q ss_pred cCC--CHHHHHHHHhhcCcchhhhhccCcCccccEEec
Q 019592 194 KGR--DIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 229 (338)
Q Consensus 194 ~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~ 229 (338)
+|. +.+....++.....|.. +||.|.+..||+|+.
T Consensus 313 ~Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 313 SGLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp TTSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred cCCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 566 78888888888888866 899999999998875
No 11
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.80 E-value=2.1e-20 Score=158.20 Aligned_cols=175 Identities=20% Similarity=0.334 Sum_probs=104.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHHccccCC--CCcccccHHHHHHHH-HH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYNF--DHPDAFDTEKLLSSM-EK 119 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~~~l-~~ 119 (338)
.+++.+|+|+|++||||||+++.|++.+.+. .+.+++.|.+++.. ......+.... -.++.+|.+.+.+.+ ..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~ 96 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER--AKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQ 96 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH--HHHSSSSSCHHHHHHHTSSCHHHHHHHTGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH--HHHHhcCCCCccCCCccccCHHHHHHHHHHH
Confidence 4678999999999999999999999988533 35677788877432 11100000000 002457777776653 66
Q ss_pred hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHH
Q 019592 120 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (338)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 199 (338)
+..+..+.+|.|++....... ........+++|+||++.+ ...+.+.+|.+|||++|.+++++|+++|+ ...
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~-~~~~~~~~d~~i~v~~~~~~~~~R~~~R~----~~~-- 168 (201)
T 1rz3_A 97 LKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQ-RKEWRPFFDFVVYLDCPREIRFARENDQV----KQN-- 168 (201)
T ss_dssp TTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTT-STTTGGGCSEEEEECCC------------------C--
T ss_pred HhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhc-cHHHHhhcCEEEEEeCCHHHHHHHHhcCC----HHH--
Confidence 666667777888776433211 1223356789999999987 56778889999999999999999999997 222
Q ss_pred HHHHHHhhcCcchhhhhccCc--CccccEEecCC
Q 019592 200 TVLDQYSKFVKPAFDDFILPT--KKYADIIIPRG 231 (338)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~--~~~aD~iI~~~ 231 (338)
...+.....|.++.|+.+. ...||+||+|+
T Consensus 169 --~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 169 --IQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred --HHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 2333222345667776554 57899999876
No 12
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.74 E-value=6.7e-19 Score=148.40 Aligned_cols=168 Identities=18% Similarity=0.236 Sum_probs=109.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC------CHHHH-HHccccCCCCcccccHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL------TEQEL-ARVHEYNFDHPDAFDTEKLLSSME 118 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l------~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~ 118 (338)
..+.-|||+|.+||||||+++.|++ + |+.+++.|...+.+ ...+. ..++...|...+..|...+.+.+-
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~---g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF 82 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-R---GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIF 82 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-C---CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHh
Confidence 4567899999999999999999998 4 58999999744321 22233 345555565556677766655431
Q ss_pred H----hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccc-hHHHhhcCeEEEEecCHHHHHHHHHhhCccc
Q 019592 119 K----LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-SRVRELMNMKIFVDTDADVRLARRIRRDTVE 193 (338)
Q Consensus 119 ~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d-~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~ 193 (338)
. +..-+.+..|.....+.+.. ...+.+++++|.|+.+ + ..+...||.+|||++|++++++|+++|++.
T Consensus 83 ~d~~~~~~L~~i~HP~I~~~~~~~~-----~~~~~~~vv~d~pLL~-E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~- 155 (210)
T 4i1u_A 83 SDEDARRRLEAITHPLIRAETEREA-----RDAQGPYVIFVVPLLV-ESRNWKARCDRVLVVDCPVDTQIARVMQRNGF- 155 (210)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHH-----HTCCSSSEEEECTTCT-TCHHHHHHCSEEEEEECCHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHH-----HhcCCCEEEEEEeccc-ccCCccccCCeEEEEECCHHHHHHHHHhcCCC-
Confidence 1 11111233343322222211 1124568999999988 6 888899999999999999999999999744
Q ss_pred cCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCC-CC
Q 019592 194 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG-GD 233 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~-~~ 233 (338)
+.+.....+... .|... ..+.||+||+|+ ++
T Consensus 156 ---s~eea~~ri~~Q-~~~ee-----k~~~AD~VIdN~~gs 187 (210)
T 4i1u_A 156 ---TREQVEAIIARQ-ATREA-----RLAAADDVIVNDAAT 187 (210)
T ss_dssp ---CHHHHHHHHHHS-CCHHH-----HHHTCSEEEECSSCC
T ss_pred ---CHHHHHHHHHHc-CChHH-----HHHhCCEEEECCCCC
Confidence 444444433332 22222 258899999988 54
No 13
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.72 E-value=9.8e-18 Score=142.34 Aligned_cols=182 Identities=17% Similarity=0.268 Sum_probs=110.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccc---cCCCCcccccHHHHHHHHHHh
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHE---YNFDHPDAFDTEKLLSSMEKL 120 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~l 120 (338)
..+++.+|+|+|++||||||+++.|++.++ ++.++++|+++... .. ..... ..++.+..++...+.+.+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 91 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDDFFKPE--SE-IETDKNGFLQYDVLEALNMEKMMSAISCW 91 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGGGBCCG--GG-SCBCTTSCBCCSSGGGBCHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCccccCH--hH-hhccccCCChhHHHHHhHHHHHHHHHHHH
Confidence 677899999999999999999999999763 48999999887432 11 11111 112334456666666555443
Q ss_pred ccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHH
Q 019592 121 RHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~ 200 (338)
... ...|..+.++ ....+.+++|+||++.+.+..+.+.+|.++|++++.+++++|+..|. .........
T Consensus 92 l~~--~~~~~~~~~~--------~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~-~~~e~~~~~ 160 (207)
T 2qt1_A 92 MES--ARHSVVSTDQ--------ESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRV-YQPPDSPGY 160 (207)
T ss_dssp HHH--HTTSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSC-CSSCCCTTH
T ss_pred HhC--CCCCCcCCCe--------eecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcC-CCccchHHH
Confidence 221 0112221111 11345689999999887556777889999999999999999998885 222222222
Q ss_pred HHHHHhhcCcchhhhhccCcCccccEE--ecCCCCcHHHHHHHHHHHHHHh
Q 019592 201 VLDQYSKFVKPAFDDFILPTKKYADII--IPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~aD~i--I~~~~~~~~~~~~~~~~i~~~l 249 (338)
+. ...++.|..+.....+.+|.+ |+++. +++++.+.|.+.+
T Consensus 161 ~~----~~~~~~~~~~~~~~~~~~~~v~~Id~~~----~~eev~~~I~~~l 203 (207)
T 2qt1_A 161 FD----GHVWPMYLKYRQEMQDITWEVVYLDGTK----SEEDLFLQVYEDL 203 (207)
T ss_dssp HH----HTHHHHHHHHHHHGGGCSSCCEEEETTS----CHHHHHHHHHHHH
T ss_pred HH----HHHhHHHHHHHHHHHhcCCeEEEecCCC----CHHHHHHHHHHHH
Confidence 22 122233333333334566755 66553 3555555555544
No 14
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.71 E-value=4.6e-18 Score=142.32 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=100.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH---H-HHHccccCCCCcccccHHHHHHHH----
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ---E-LARVHEYNFDHPDAFDTEKLLSSM---- 117 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~l~~~l---- 117 (338)
....+|||+|++||||||+++.|++.++ +.++++|.+++.+... + ...++...++ ++.+|...+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~ 85 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESR 85 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCH
Confidence 4578999999999999999999999765 8999999987554332 1 1234444455 5667766554422
Q ss_pred HHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCC
Q 019592 118 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (338)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 197 (338)
+.+.....+..|.+......+. .....++++|+|+.+ +..+.+.+|.+|||++|.+++++|++
T Consensus 86 ~~~~~l~~i~hP~i~~~~~~~~------~~~~~~vv~d~pll~-e~~~~~~~d~vi~v~a~~e~r~~Rli---------- 148 (192)
T 2grj_A 86 ENLKKLELLVHPLMKKRVQEII------NKTSGLIVIEAALLK-RMGLDQLCDHVITVVASRETILKRNR---------- 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HTCCEEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHCS----------
T ss_pred HHHHHHHhhhCHHHHHHHHHHH------HHcCCEEEEEEecee-ecChHHhCCEEEEEECCHHHHHHHHH----------
Confidence 0011111223344332222211 011468999999887 45678889999999999999999881
Q ss_pred HHHHHHHHhhcCcchhhhhccCcCccccEEecCCCC
Q 019592 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (338)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (338)
..|+.. |+.+..+.||+||+|+++
T Consensus 149 ----~~q~~~--------~~~~~~~~AD~vI~n~~~ 172 (192)
T 2grj_A 149 ----EADRRL--------KFQEDIVPQGIVVANNST 172 (192)
T ss_dssp ----SHHHHH--------TTCTTCCCCSEEEECSSC
T ss_pred ----HhcCCc--------hhhhHHhcCCEEEECCCC
Confidence 122222 122336899999998853
No 15
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.63 E-value=1.5e-16 Score=144.67 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=107.4
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..+.|++.. |+|||| ++++|.+++|.||||||||||+++|++++.+
T Consensus 9 ~ls~~y~~~~~L~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 9 HLSKSFQNTPVLNDISL---------------SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp EEEEEETTEEEEEEEEE---------------EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSC
T ss_pred eEEEEECCEEEEEeeEE---------------EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccc
Confidence 4467787665 799999 9999999999999999999999999998765
Q ss_pred ------CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccc
Q 019592 75 ------QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 75 ------~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (338)
.++.++.|+ .++..++..++..++......+.....+++.+.++.+...... ....+|.++.+|+..+++.
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 135666666 3456678888776654333333334445667777777665432 3457999999999888889
Q ss_pred cCCCcEEEEeccccccchHHHhh
Q 019592 146 VNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+.+++++++|||++.+|+..+..
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHH
Confidence 99999999999999999875543
No 16
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.63 E-value=5.1e-16 Score=137.93 Aligned_cols=184 Identities=12% Similarity=0.173 Sum_probs=104.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC-----C-HHHH-HHccccCCCCcccccHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL-----T-EQEL-ARVHEYNFDHPDAFDTEKLLSSM 117 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l-----~-~~~~-~~~~~~~~~~~~~~~~~~l~~~l 117 (338)
.+.+.+|+|+|++||||||+++.|+. + ++.+++.|.+++.+ . ..+. ..++...+...+.++...+...+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~-l---g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~v 147 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN-L---GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRV 147 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH-H---TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-C---CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHH
Confidence 35678999999999999999999995 4 47899998763211 1 1111 12222223222334444332110
Q ss_pred ----HHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccc
Q 019592 118 ----EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE 193 (338)
Q Consensus 118 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~ 193 (338)
..+.....+..|.+......++. .....+.+++|+||++.+ +..+...+|.+|||++|.+++++|+..|+
T Consensus 148 f~~~~~~~~l~~i~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~-~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~--- 221 (281)
T 2f6r_A 148 FGNKKQMKILTDIVWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLL-EAGWQSMVHEVWTVVIPETEAVRRIVERD--- 221 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred hCCHHHHHHhhcccChHHHHHHHHHHH--HHhccCCCEEEEEechhh-ccchHHhCCEEEEEcCCHHHHHHHHHHcC---
Confidence 00000011222322222111110 011233578999999876 45667789999999999999999999985
Q ss_pred cCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHH
Q 019592 194 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 245 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i 245 (338)
+.+.+.....+... .+... + ...||++|+|+++.+...+++.+.+
T Consensus 222 -g~s~e~~~~ri~~q-~~~~~-~----~~~AD~vIdn~~s~eel~~~I~~~l 266 (281)
T 2f6r_A 222 -GLSEAAAQSRLQSQ-MSGQQ-L----VEQSNVVLSTLWESHVTQSQVEKAW 266 (281)
T ss_dssp -CCCHHHHHHHHHTS-CCHHH-H----HHTCSEEEECSSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHc-CChHh-h----HhhCCEEEECCCCHHHHHHHHHHHH
Confidence 34555655555554 22222 2 2568999988753333333333333
No 17
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.62 E-value=3.7e-16 Score=132.43 Aligned_cols=176 Identities=17% Similarity=0.275 Sum_probs=96.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCH------HHH-HHccccCCCCcccccHHHHHH-----
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE------QEL-ARVHEYNFDHPDAFDTEKLLS----- 115 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~------~~~-~~~~~~~~~~~~~~~~~~l~~----- 115 (338)
+.+|+|+|++||||||+++.|++ + ++.+++.|.+++.... .+. ..++...+...+..+...+..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l---g~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 77 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L---GVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH 77 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T---TCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C---CCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCC
Confidence 46899999999999999999998 4 4788888876533211 111 112222222112222222211
Q ss_pred -----HHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhC
Q 019592 116 -----SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (338)
Q Consensus 116 -----~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 190 (338)
.+.. +..|.+.....+.. .. .....+|+|++..+. ..+.+.+|.+|||++|.+++++|+..|+
T Consensus 78 ~~~~~~l~~------~~~p~v~~~~~~~~----~~-~~~~~vv~~~~~l~e-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 145 (206)
T 1jjv_A 78 DEDKLWLNN------LLHPAIRERMKQKL----AE-QTAPYTLFVVPLLIE-NKLTALCDRILVVDVSPQTQLARSAQRD 145 (206)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHH----HT-CCSSEEEEECTTTTT-TTCGGGCSEEEEEECCHHHHHHHHC---
T ss_pred HHHHHHHHh------ccCHHHHHHHHHHH----Hh-cCCCEEEEEechhhh-cCcHhhCCEEEEEECCHHHHHHHHHHcC
Confidence 1111 11122211111110 00 124588999988763 3467789999999999999999999886
Q ss_pred ccccCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHh
Q 019592 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
. .+.+.+...+... .+... ..+.||++|+|+++.+..++++.++|.+.+
T Consensus 146 ~----~~~e~~~~r~~~q-~~~~~-----~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~ 194 (206)
T 1jjv_A 146 N----NNFEQIQRIMNSQ-VSQQE-----RLKWADDVINNDAELAQNLPHLQQKVLELH 194 (206)
T ss_dssp ------CHHHHHHHHHHS-CCHHH-----HHHHCSEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHhc-CChHH-----HHHhCCEEEECCCCccccHHHHHHHHHHHH
Confidence 3 3445555444432 22222 135799999988644434445555555544
No 18
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.61 E-value=1.3e-16 Score=146.18 Aligned_cols=140 Identities=15% Similarity=0.086 Sum_probs=106.8
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..+.|++.. |+|||| ++++|.+++|.||||||||||+++|++++.+
T Consensus 8 ~l~~~yg~~~~L~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 8 NVTKAWGEVVVSKDINL---------------DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp EEEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG
T ss_pred eEEEEECCEEEEeeeEE---------------EECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH
Confidence 3457787665 799999 9999999999999999999999999998875
Q ss_pred --CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCC
Q 019592 75 --QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 75 --~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.++.++.|+ .++..++..++..++...+..+.....++..+.++.+...... ....+|.++.+|+..+++.+.++
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 246777777 4456778888766544333333333345666777776664432 34479999999998888889999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++++|||++.+|+..+.
T Consensus 153 ~lLLLDEPts~LD~~~~~ 170 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRV 170 (381)
T ss_dssp SEEEEESTTTTSCHHHHH
T ss_pred CEEEEECCCcCCCHHHHH
Confidence 999999999999986544
No 19
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=99.61 E-value=2.6e-16 Score=134.80 Aligned_cols=83 Identities=48% Similarity=0.921 Sum_probs=78.7
Q ss_pred ccCCCcccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeCCCeeEEEe
Q 019592 256 KIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFCKRLCGVSV 335 (338)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~~~~~~v~i 335 (338)
+++++++++.+||+++++++++||++|.+.+||++.+||+++|+||+++++|+++.+|+||+|..|.|..+.+++|+|||
T Consensus 30 ~~~~~v~~~~~hp~i~~~lt~lRd~~t~~~~Fr~~~~rl~~ll~yEa~~~lp~~~~~v~TP~g~~~~g~~~~~~l~~V~I 109 (243)
T 1bd3_D 30 TRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSI 109 (243)
T ss_dssp HHCTTEEECCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEECTTSCEEEEEEECCCEEEEEE
T ss_pred cCCCcEEEecCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCcceEeeeeccCcEEEEEE
Confidence 45678888888899999999999999999999999999999999999999999999999999988999988899999999
Q ss_pred ecC
Q 019592 336 IRR 338 (338)
Q Consensus 336 lra 338 (338)
|||
T Consensus 110 LRa 112 (243)
T 1bd3_D 110 VRA 112 (243)
T ss_dssp ETT
T ss_pred Ecc
Confidence 997
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.59 E-value=5.8e-16 Score=141.27 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=104.9
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..+.|++.. |+++|| ++++|.+++|.||||||||||+++|++++.+
T Consensus 8 ~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 8 NLKKYFGKVKAVDGVSF---------------EVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp EEEEEETTEEEEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred EEEEEECCEEEEeeeEE---------------EEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh
Confidence 3457776654 799999 9999999999999999999999999998875
Q ss_pred --CCEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCC
Q 019592 75 --QRVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 75 --~~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.++.++.++. ++..++..++..++......+.......+.+.++.+...... ....+|.++.+|+..+++.+.++
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2466777763 456678888776654322222222234566777777654322 33479999999988888889999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++++|||++.+|+..+.
T Consensus 153 ~lLLLDEP~s~LD~~~r~ 170 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRM 170 (359)
T ss_dssp SEEEEESTTTTSCHHHHH
T ss_pred CEEEEECCcccCCHHHHH
Confidence 999999999999986543
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.59 E-value=4.8e-16 Score=141.53 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=90.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------------CEEEEeCC-CCCCCCCHHHHHHcc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------------RVVLVNQD-SFYHNLTEQELARVH 98 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------------~~~~l~~D-~~~~~l~~~~~~~~~ 98 (338)
++++|.++||.||||||||||+++|++++.|. ++.++.|+ .++..++..++..+.
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999988751 35566665 334556666655443
Q ss_pred ccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 99 EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
...+..+.....+++.+.|+.+...... ....+|.++.+|+..+++.+.+++++++|||++++|+...
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~ 199 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 3223223333344566777776654432 3347999999999888889999999999999999998543
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.59 E-value=8.6e-16 Score=140.81 Aligned_cols=140 Identities=17% Similarity=0.146 Sum_probs=100.1
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------- 75 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------- 75 (338)
+..+.|++. .|+++|| +++++.+++|.||||||||||+++|++++.+.
T Consensus 16 ~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 16 NLTKRFGNFTAVNKLNL---------------TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp EEEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred EEEEEECCEEEEeeeEE---------------EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh
Confidence 345677665 4788998 99999999999999999999999999988751
Q ss_pred ---CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCC
Q 019592 76 ---RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 76 ---~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
++.++.++ .++..++..++..++......+.......+.+.++.+...... ....+|.++.+|+..+++.+.++
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 160 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 160 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35666676 3456677777776543222222222234566777776654322 33479999999998888889999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++++|||++.+|+..+.
T Consensus 161 ~lLLLDEP~s~LD~~~r~ 178 (372)
T 1v43_A 161 DVLLMDEPLSNLDAKLRV 178 (372)
T ss_dssp SEEEEESTTTTSCHHHHH
T ss_pred CEEEEcCCCccCCHHHHH
Confidence 999999999999986544
No 23
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=99.58 E-value=8.5e-16 Score=129.47 Aligned_cols=78 Identities=28% Similarity=0.319 Sum_probs=74.0
Q ss_pred CCcccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeec
Q 019592 259 PNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIR 337 (338)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilr 337 (338)
+++++++| |+++++++++||++|.+.+||++.+||+++|+||+++++|+++.+|+||+| .|.|..+. +++|+|||||
T Consensus 9 ~~v~v~~h-p~i~~~lt~lRd~~t~~~~Fr~~~~rl~~lL~yEa~~~lp~~~~~V~TP~g-~~~g~~~~~~~i~~V~IlR 86 (217)
T 3dmp_A 9 PNLFILDH-PLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLV-EIDAPVIAGKKLAIVPVLR 86 (217)
T ss_dssp TTEEEECC-HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEECSSC-EEEEEEECGGGEEEEEEET
T ss_pred CCeEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCe-EEEEEEecCCcEEEEEecc
Confidence 56788865 999999999999999999999999999999999999999999999999999 89999997 8999999999
Q ss_pred C
Q 019592 338 R 338 (338)
Q Consensus 338 a 338 (338)
|
T Consensus 87 a 87 (217)
T 3dmp_A 87 A 87 (217)
T ss_dssp T
T ss_pred c
Confidence 7
No 24
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.58 E-value=7.2e-16 Score=140.82 Aligned_cols=140 Identities=17% Similarity=0.128 Sum_probs=103.2
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----------------- 74 (338)
+..+.|++. .|+|+|| +++++.+++|.||||||||||+++|++++.+
T Consensus 8 ~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 8 NIVKKFGNFTALNNINL---------------KIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp EEEEESSSSEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred eEEEEECCEEEEEeeEE---------------EECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 345677665 4799999 9999999999999999999999999998875
Q ss_pred --CCEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCC
Q 019592 75 --QRVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 75 --~~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
.++.++.++. ++..++..++..++......+.....+.+.+.++.+...... ....+|.++.+|+..+++.+.++
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2356676763 455677777765543222222222234566777777665432 34479999999988888889999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++++|||++.+|+..+.
T Consensus 153 ~lLLLDEP~s~LD~~~r~ 170 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRL 170 (362)
T ss_dssp SEEEEESGGGGSCHHHHH
T ss_pred CEEEEECccccCCHHHHH
Confidence 999999999999986443
No 25
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.58 E-value=4.3e-16 Score=134.67 Aligned_cols=131 Identities=14% Similarity=0.076 Sum_probs=94.1
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------C
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------------R 76 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------------------~ 76 (338)
.|+|||| ++++|.+++|+||||||||||++.|++.+.+. +
T Consensus 20 ~L~~isl---------------~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 84 (235)
T 3tif_A 20 ALKNVNL---------------NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDK 84 (235)
T ss_dssp EEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred eEEeeeE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhcc
Confidence 5889999 99999999999999999999999999988751 2
Q ss_pred EEEEeCCC-CCCCCCHHHHHHccccCC---CCcccccHHHHHHHHHHhccCCc---cccccccCcCCccCCCCccccCCC
Q 019592 77 VVLVNQDS-FYHNLTEQELARVHEYNF---DHPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPS 149 (338)
Q Consensus 77 ~~~l~~D~-~~~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
+.++.++. ++..++..++..+..... ..+.....+.+.+.+..+..... .....+|.++.+|+..+++.+.++
T Consensus 85 i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p 164 (235)
T 3tif_A 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164 (235)
T ss_dssp EEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 56666663 344556666554432211 11122223445566666655432 234578999999988888889999
Q ss_pred cEEEEeccccccchHHHh
Q 019592 150 DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 150 ~vlIldg~~~~~d~~~~~ 167 (338)
+++|+|||++++|+....
T Consensus 165 ~llllDEPts~LD~~~~~ 182 (235)
T 3tif_A 165 PIILADQPTWALDSKTGE 182 (235)
T ss_dssp SEEEEESTTTTSCHHHHH
T ss_pred CEEEEeCCcccCCHHHHH
Confidence 999999999999886543
No 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.57 E-value=4.1e-16 Score=137.62 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=95.1
Q ss_pred cCCccccc-c-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q 019592 13 SSGVHFSG-F-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------- 75 (338)
Q Consensus 13 ~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------- 75 (338)
+..+.|++ . .|+|||| ++++|.+++|+||||||||||++.|++.+.+.
T Consensus 12 ~ls~~y~~~~~~L~~isl---------------~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 12 ELNYNYSDGTHALKGINM---------------NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSR 76 (275)
T ss_dssp EEEEECTTSCEEEEEEEE---------------EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSH
T ss_pred EEEEEECCCCeEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccc
Confidence 34566643 3 5788888 99999999999999999999999999988752
Q ss_pred --------CEEEEeCCC--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCc
Q 019592 76 --------RVVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 76 --------~~~~l~~D~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~ 143 (338)
.+.++.|+. .+..++..++..++...+..+.....+.+.+.++.+...... ....+|.++.+|+..++
T Consensus 77 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr 156 (275)
T 3gfo_A 77 KGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 156 (275)
T ss_dssp HHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred ccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 234444432 122344444443332222222222234455666666554322 33478999999988888
Q ss_pred cccCCCcEEEEeccccccchHHHh
Q 019592 144 RRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+.+++++|+|||++++|+....
T Consensus 157 aL~~~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 157 VLVMEPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHH
Confidence 889999999999999999887544
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.57 E-value=5.3e-16 Score=135.61 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=95.3
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------ 75 (338)
.+.|++. .|++||| ++++|.+++|.||||||||||++.|++.+++.
T Consensus 22 ~~~y~~~~vl~~vsl---------------~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 22 RKRIGKKEILKGISF---------------EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp EEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred EEEECCEEEEEeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHH
Confidence 3555443 4677777 99999999999999999999999999988752
Q ss_pred --CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 76 --RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 76 --~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
.+.++.++. ++..++..++..+....+..+.....+.+.+.++.+...... ....+|.++.+|+..+++.+.+++
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 245555553 334456655544322111111111123455667766554332 334789999999888888899999
Q ss_pred EEEEeccccccchHHHhh
Q 019592 151 VILLEGILVFHDSRVREL 168 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~~ 168 (338)
++++|||++++|+..+..
T Consensus 167 lllLDEPts~LD~~~~~~ 184 (256)
T 1vpl_A 167 LAILDEPTSGLDVLNARE 184 (256)
T ss_dssp EEEEESTTTTCCHHHHHH
T ss_pred EEEEeCCccccCHHHHHH
Confidence 999999999998875443
No 28
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.57 E-value=6.1e-16 Score=140.82 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=100.3
Q ss_pred Cccc-ccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------------------
Q 019592 15 GVHF-SGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------------ 74 (338)
Q Consensus 15 ~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~------------------ 74 (338)
.+.| ++. .|+|||| +++++.+++|.||||||||||+++|++++.+
T Consensus 21 ~~~y~g~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 21 EKIYPGGARSVRGVSF---------------QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EECCTTSTTCEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG
T ss_pred EEEEcCCCEEEeeeEE---------------EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChh
Confidence 4555 444 3677777 9999999999999999999999999998875
Q ss_pred -CCEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc
Q 019592 75 -QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 75 -~~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
.++.++.++ .++..++..++..++......+.....+.+.+.++.+...... ....+|.++.+|+..+++.+.+++
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 135666666 3456677777765543222222222234566677776654322 344799999999888888899999
Q ss_pred EEEEeccccccchHHHhh
Q 019592 151 VILLEGILVFHDSRVREL 168 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~~ 168 (338)
++++|||++.+|+..+..
T Consensus 166 lLLLDEP~s~LD~~~r~~ 183 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRE 183 (355)
T ss_dssp EEEEESTTCCSSHHHHHH
T ss_pred EEEEeCCcccCCHHHHHH
Confidence 999999999999865543
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.56 E-value=5.7e-16 Score=132.97 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=92.8
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
..+.|++. .|+|+|| ++++|.+++|.||||||||||++.|++.++|. |
T Consensus 10 l~~~y~~~~~l~~vsl---------------~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 10 IKKVIRGYEILKGISL---------------SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEETTEEEEEEEEE---------------EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHH
T ss_pred EEEEECCEeeEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHH
Confidence 34666544 4799999 99999999999999999999999999988752 1
Q ss_pred ---------EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcc
Q 019592 77 ---------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 77 ---------~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 144 (338)
+.++.++. ++..++..++..+.......+.....+.+.+.++.+...... ....+|.++.+++..+.+
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 23333332 223334444333221111111111223455666666554332 334789999999888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++++|||++++|+....
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~ 177 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTK 177 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHH
T ss_pred HHcCCCEEEEeCCCCCCCHHHHH
Confidence 88999999999999999886544
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.56 E-value=7.8e-16 Score=139.94 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=100.7
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------- 75 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------- 75 (338)
.+.|++..|+++|| ++++|.+++|.||||||||||+++|++++.+.
T Consensus 8 ~~~y~~~~l~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 8 SRKWKNFSLDNLSL---------------KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEECSSCEEEEEEE---------------EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHH
T ss_pred EEEECCEEEeeeEE---------------EEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhC
Confidence 46675557799999 99999999999999999999999999988752
Q ss_pred CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 76 RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 76 ~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
++.++.++. ++..++..++..++......+.. +.+.+.++.+...... ....+|.++.+|+..+++.+.+++++
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lL 149 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL 149 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 245666653 44566777765543221111221 5566777777665432 34479999999988888889999999
Q ss_pred EEeccccccchHHHhh
Q 019592 153 LLEGILVFHDSRVREL 168 (338)
Q Consensus 153 Ildg~~~~~d~~~~~~ 168 (338)
++|||++.+|+..+..
T Consensus 150 LLDEP~s~LD~~~~~~ 165 (348)
T 3d31_A 150 LLDEPLSALDPRTQEN 165 (348)
T ss_dssp EEESSSTTSCHHHHHH
T ss_pred EEECccccCCHHHHHH
Confidence 9999999999865543
No 31
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.55 E-value=9.8e-15 Score=123.36 Aligned_cols=174 Identities=20% Similarity=0.281 Sum_probs=98.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCC---HH---HHH-HccccCCCCcccccHHHHHHHHHHhc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT---EQ---ELA-RVHEYNFDHPDAFDTEKLLSSMEKLR 121 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~---~~---~~~-~~~~~~~~~~~~~~~~~l~~~l~~l~ 121 (338)
.+|+|+|++||||||+++.|++ ++ +.+++.|.+++... .. ... .++...|..++..+...+... .
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~----~ 73 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADI----V 73 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHT----T
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHH----H
Confidence 4799999999999999999999 64 88999887764321 11 111 122222322223443333221 1
Q ss_pred cCCc--------cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccc
Q 019592 122 HGQA--------VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE 193 (338)
Q Consensus 122 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~ 193 (338)
.... +..|.+....... ........++|+|+++.+ +..+...+|.+|||++|.+++.+|+..|.
T Consensus 74 f~~~~~~~~l~~l~~~~v~~~~~~~----~~~~~~~~~vive~~~l~-~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~--- 145 (204)
T 2if2_A 74 FKDEEKLRKLEEITHRALYKEIEKI----TKNLSEDTLFILEASLLV-EKGTYKNYDKLIVVYAPYEVCKERAIKRG--- 145 (204)
T ss_dssp SSCHHHHHHHHHHHHHHHTTTHHHH----HHHSCTTCCEEEECSCST-TTTCGGGSSEEEEECCCHHHHHHHHHHTC---
T ss_pred hCCHHHHHHHHHhhCHHHHHHHHHH----HHhccCCCEEEEEccccc-cCCchhhCCEEEEEECCHHHHHHHHHHcC---
Confidence 1000 0112111111000 000112268999999766 45566778999999999999999999872
Q ss_pred cCCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 194 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
.+.+.+...+.... +.+ ++.+.||++|+++. +++.+.+.|.+.+.
T Consensus 146 --~~~~~~~~~~~~~~-~~~-----~~~~~ad~vId~~~----~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 146 --MSEEDFERRWKKQM-PIE-----EKVKYADYVIDNSG----SIEETYKQVKKVYE 190 (204)
T ss_dssp --CCHHHHHHHHTTSC-CHH-----HHGGGCSEECCCSS----CHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHhCC-Chh-----HHHhcCCEEEECCC----CHHHHHHHHHHHHH
Confidence 33444444444432 221 22467899997763 34555555555543
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.55 E-value=1.5e-15 Score=138.57 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=103.2
Q ss_pred cCCcccccc---cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q 019592 13 SSGVHFSGF---HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------- 75 (338)
Q Consensus 13 ~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-------------- 75 (338)
+..+.|++. .|+|||| ++++|.+++|.||||||||||+++|++++.+.
T Consensus 8 ~l~~~y~~~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 8 NVSKVFKKGKVVALDNVNI---------------NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72 (353)
T ss_dssp EEEEEEGGGTEEEEEEEEE---------------EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEET
T ss_pred eEEEEECCEeeeeEeceEE---------------EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccc
Confidence 345677655 5799999 99999999999999999999999999987651
Q ss_pred ----------CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCC
Q 019592 76 ----------RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFP 142 (338)
Q Consensus 76 ----------~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~ 142 (338)
++.++.++ .++..++..++..++......+.....+.+.+.++.+...... ....+|.++.+|+..+
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 24566665 3456678888776654332222222334566777776654332 3347999999998888
Q ss_pred ccccCCCcEEEEeccccccchHHHh
Q 019592 143 ARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++.+.+++++++|||++.+|+..+.
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHH
Confidence 8889999999999999999986443
No 33
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.55 E-value=1.1e-15 Score=134.34 Aligned_cols=138 Identities=11% Similarity=0.084 Sum_probs=97.9
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------- 76 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-------------- 76 (338)
+..+.|++.. |++||| ++++|.+++|+||||||||||++.|++.+.+. |
T Consensus 16 ~l~~~~~~~~vL~~vsl---------------~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 16 HLHYHVQQQALINDVSL---------------HIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEETTEEEEEEEEE---------------EEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH
T ss_pred eEEEEeCCeeEEEeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH
Confidence 3356665554 799999 99999999999999999999999999988762 2
Q ss_pred ------EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccC
Q 019592 77 ------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 77 ------~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (338)
+.++.++. ++..++..++..++...+ ......+.+.+.++.+...... ....+|.++.+|+..+++.+.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 34444442 224455555555443322 1223345566777776654332 344789999999888888887
Q ss_pred ------CCcEEEEeccccccchHHHh
Q 019592 148 ------PSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 148 ------~~~vlIldg~~~~~d~~~~~ 167 (338)
+++++|+|||++++|+....
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred ccccCCCCCEEEEeCccccCCHHHHH
Confidence 99999999999999986543
No 34
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.55 E-value=1.2e-15 Score=130.34 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=101.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCC------HHHH-HHccccCCCCcccccHHHHHHHHH-
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT------EQEL-ARVHEYNFDHPDAFDTEKLLSSME- 118 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~------~~~~-~~~~~~~~~~~~~~~~~~l~~~l~- 118 (338)
++.+|+|+|++||||||+++.|++ + ++.+++.|.+++... ..+. ..++...+.....++...+...+-
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l---g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~ 78 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L---GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFA 78 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c---CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhC
Confidence 578999999999999999999998 4 478999887653321 1111 122333333223344433332210
Q ss_pred ---HhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccC
Q 019592 119 ---KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG 195 (338)
Q Consensus 119 ---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~ 195 (338)
.+.....+..|.+....... .... ...++++|+++.. +..+...+|.+|||++|.+++++|+..|+.
T Consensus 79 ~~~~~~~l~~~~~p~v~~~~~~~----~~~~-~~~~vi~~~~~l~-~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~---- 148 (218)
T 1vht_A 79 NPEEKNWLNALLHPLIQQETQHQ----IQQA-TSPYVLWVVPLLV-ENSLYKKANRVLVVDVSPETQLKRTMQRDD---- 148 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----HHHC-CSSEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHhHCHHHHHHHHHH----HHhc-CCCEEEEEeeeee-ccCccccCCEEEEEECCHHHHHHHHHHcCC----
Confidence 00000011112221111110 0001 2357888998765 333667789999999999999999998853
Q ss_pred CCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHH
Q 019592 196 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
.+.+.+...+... .+.+. +...||++|+++.+.+...+.+.+.+...
T Consensus 149 ~~~~~~~~~~~~~-~~~~~-----~~~~ad~vId~~~~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 149 VTREHVEQILAAQ-ATREA-----RLAVADDVIDNNGAPDAIASDVARLHAHY 195 (218)
T ss_dssp CCHHHHHHHHHHS-CCHHH-----HHHHCSEEEECSSCTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-CChHH-----HHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 2334444444332 22222 13568999988864444445555555443
No 35
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.54 E-value=2.9e-15 Score=125.62 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=71.0
Q ss_pred cccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 261 LYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 261 ~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
+++. +||+++++++++||++|.+.+||++.+||+++|+||+++++|+++.+|+||+| .|.|..++ +++|+||||||
T Consensus 3 v~v~-~~p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~g-~~~g~~~~g~~l~~V~ILra 79 (208)
T 1v9s_A 3 ITLV-DHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIA-PARVKVLSGKKLALVAILRA 79 (208)
T ss_dssp EEEC-CCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEECSSS-EEEEEEECSSCCEEEEETTT
T ss_pred eEEc-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHccCCCeEEEEECCCc-eEEEEEecCCceEEEEeccc
Confidence 3444 45999999999999999999999999999999999999999999999999999 88999997 89999999997
No 36
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=8.6e-15 Score=123.34 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=87.4
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHcc
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVH 98 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~ 98 (338)
....++|||| .+.++.+|+|+|++||||||+++.|++.++ ..+++.|++...........+
T Consensus 11 ~~~~~~~~~~---------------~~~~~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~d~~~~~~~g~~i~~~- 71 (199)
T 3vaa_A 11 VDLGTENLYF---------------QSNAMVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDLDWYIEERFHKTVGEL- 71 (199)
T ss_dssp ----------------------------CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHHTSCHHHH-
T ss_pred CCCCCCceeE---------------ecCCCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcchHHHHHHhCCcHHHH-
Confidence 3456889999 888999999999999999999999999986 667777764311000000000
Q ss_pred ccCCCCcc-cccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchH---HHhhcCeEEE
Q 019592 99 EYNFDHPD-AFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR---VRELMNMKIF 174 (338)
Q Consensus 99 ~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~---~~~~~d~~i~ 174 (338)
|...+ ........+.+..+ .....++|..|.....+.. .....+.+||
T Consensus 72 ---~~~~~~~~~~~~e~~~l~~l-------------------------~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~ 123 (199)
T 3vaa_A 72 ---FTERGEAGFRELERNMLHEV-------------------------AEFENVVISTGGGAPCFYDNMEFMNRTGKTVF 123 (199)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH-------------------------TTCSSEEEECCTTGGGSTTHHHHHHHHSEEEE
T ss_pred ---HHhcChHHHHHHHHHHHHHH-------------------------hhcCCcEEECCCcEEccHHHHHHHHcCCEEEE
Confidence 00000 00000001111111 1233445554433322332 2234689999
Q ss_pred EecCHHHHHHHHH-hhCccc--cCCCHHH---HHHHHhhcCcchhhhhccCcCccccEEecCCC-CcHHHHHHHHHHHHH
Q 019592 175 VDTDADVRLARRI-RRDTVE--KGRDIAT---VLDQYSKFVKPAFDDFILPTKKYADIIIPRGG-DNHVAIDLIVQHIRT 247 (338)
Q Consensus 175 l~~~~~~~~~R~~-~R~~~~--~~~~~~~---~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~-~~~~~~~~~~~~i~~ 247 (338)
+++|.+++.+|+. .|.... .+...+. ....+.....|.| .. ||++|+++. +.+...+++++.+..
T Consensus 124 L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y-------~~-ad~~Idt~~~s~ee~~~~I~~~l~~ 195 (199)
T 3vaa_A 124 LNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFY-------TQ-AQYIFNADELEDRWQIESSVQRLQE 195 (199)
T ss_dssp EECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHH-------TT-SSEEEECCCCSSHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHH-------hh-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999998 442222 2333322 2222222222333 23 999998875 344566677777665
Q ss_pred Hh
Q 019592 248 KL 249 (338)
Q Consensus 248 ~l 249 (338)
.+
T Consensus 196 ~l 197 (199)
T 3vaa_A 196 LL 197 (199)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 37
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=99.54 E-value=3.7e-15 Score=125.63 Aligned_cols=78 Identities=27% Similarity=0.283 Sum_probs=70.7
Q ss_pred CcccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeee-C-CCeeEEEeec
Q 019592 260 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDF-C-KRLCGVSVIR 337 (338)
Q Consensus 260 ~~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~-~-~~~~~v~ilr 337 (338)
++++++ ||+++++++++||++|.+.+||++.+||+++|+||+++++|+++.+|+||+|..+.|..+ . +++|+|||||
T Consensus 2 ~v~v~~-hp~~~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~yEa~~~l~~~~~~v~TP~g~~~~~~~~~~~~~i~iV~IlR 80 (216)
T 1xtt_A 2 PLYVID-KPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILR 80 (216)
T ss_dssp CEEECC-CHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEEECGGGGSEEEEEEET
T ss_pred ceEEcC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhCCceeEEEECCCccEecceEecCCCcEEEEeecC
Confidence 356666 699999999999999999999999999999999999999999999999999977777544 4 7899999999
Q ss_pred C
Q 019592 338 R 338 (338)
Q Consensus 338 a 338 (338)
|
T Consensus 81 a 81 (216)
T 1xtt_A 81 A 81 (216)
T ss_dssp T
T ss_pred C
Confidence 7
No 38
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.54 E-value=5.9e-14 Score=122.66 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred CcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCcc-ccCCCHHHHHHHHhhcCcchhhhhccCcCcccc-E
Q 019592 149 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-I 226 (338)
Q Consensus 149 ~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~ 226 (338)
...+++||...+. .+.+..|++|||+++.+++.+|+.++... ..+.+.+.....+..+........+.|....+| +
T Consensus 145 ~~~~V~~gr~~~~--~v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~ 222 (252)
T 4e22_A 145 APGLIADGRDMGT--IVFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADAL 222 (252)
T ss_dssp SSCEEEEESSCCC--CCSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEE
T ss_pred CCCEEEEeceece--eecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeE
Confidence 3457888866542 13344689999999999999998763111 123456677777666666666677888888888 8
Q ss_pred EecCCCCcH-HHHHHHHHHHH
Q 019592 227 IIPRGGDNH-VAIDLIVQHIR 246 (338)
Q Consensus 227 iI~~~~~~~-~~~~~~~~~i~ 246 (338)
+|+++..+. ..++.+.+.+.
T Consensus 223 ~Idts~~~~eev~~~I~~~i~ 243 (252)
T 4e22_A 223 VLDSTSMSIEQVIEQALAYAQ 243 (252)
T ss_dssp EEECSSSCHHHHHHHHHHHHH
T ss_pred EEECcCCCHHHHHHHHHHHHH
Confidence 887775332 33344444443
No 39
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.54 E-value=9.6e-16 Score=132.72 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=93.8
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------- 76 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~----------------- 76 (338)
.+.|++. |+|||| ++++ .+++|.||||||||||++.|++.+.|. |
T Consensus 8 ~~~y~~~-l~~isl---------------~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 8 EKRLGNF-RLNVDF---------------EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp EEEETTE-EEEEEE---------------EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTS
T ss_pred EEEeCCE-EeeeEE---------------EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhC
Confidence 4566554 899999 9999 999999999999999999999998752 1
Q ss_pred -EEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEE
Q 019592 77 -VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (338)
Q Consensus 77 -~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (338)
+.++.++. ++..++..++..+....+.. ..+.+.+.+.++.+...... ....+|.++.+|+..+++.+.+++++
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 148 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 23333432 23345555555443211110 11234456667766654332 34479999999988888889999999
Q ss_pred EEeccccccchHHHhh
Q 019592 153 LLEGILVFHDSRVREL 168 (338)
Q Consensus 153 Ildg~~~~~d~~~~~~ 168 (338)
++|||++++|+.....
T Consensus 149 lLDEPts~LD~~~~~~ 164 (240)
T 2onk_A 149 LLDEPLSAVDLKTKGV 164 (240)
T ss_dssp EEESTTSSCCHHHHHH
T ss_pred EEeCCcccCCHHHHHH
Confidence 9999999998875443
No 40
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=99.54 E-value=5.1e-15 Score=125.07 Aligned_cols=78 Identities=23% Similarity=0.257 Sum_probs=73.0
Q ss_pred CcccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 260 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 260 ~~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
+...+.++|+++++++++||++|.+.+||++.+||+++|+||+++++|+++.+|+||+| .|.|..++ +++|+||||||
T Consensus 14 ~~~~~~~~p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~yEa~~~lp~~~~~v~TP~g-~~~g~~~~g~~lviV~Ilrg 92 (221)
T 1o5o_A 14 KNLVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPIT-KTIGYRINDKDIVVVPILRA 92 (221)
T ss_dssp TTEEECCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSSC-EEEEEECCSTTEEEEEEETT
T ss_pred ceEEecCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-eEEEEEecCCeEEEEEEecc
Confidence 44556677999999999999999999999999999999999999999999999999999 88999998 89999999997
No 41
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.54 E-value=1.3e-15 Score=133.46 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=95.6
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
..+.|++. .|+|||| ++++|.+++|.||||||||||++.|++.+.|.
T Consensus 13 l~~~y~~~~vl~~vsl---------------~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 13 IVKYFGEFKALDGVSI---------------SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp EEEEETTEEEEEEECC---------------EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred eEEEECCEeeEeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 35666554 4788888 99999999999999999999999999988752
Q ss_pred -----CEEEEeCCC-CCCCCCHHHHHHccccC--CC-----------CcccccHHHHHHHHHHhccCCcc--ccccccCc
Q 019592 76 -----RVVLVNQDS-FYHNLTEQELARVHEYN--FD-----------HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFK 134 (338)
Q Consensus 76 -----~~~~l~~D~-~~~~l~~~~~~~~~~~~--~~-----------~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~ 134 (338)
++.++.++. ++..++..++..+.... .. .+.......+.+.++.+...... ....+|.+
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHH
Confidence 134444442 22334555554443221 11 11111234455667766554322 33478999
Q ss_pred CCccCCCCccccCCCcEEEEeccccccchHHHhh
Q 019592 135 SYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 135 ~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+.+++..+.+.+.+++++++|||++++|+.....
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~ 191 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 9999888888889999999999999998875443
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.54 E-value=1.9e-15 Score=128.45 Aligned_cols=134 Identities=10% Similarity=0.191 Sum_probs=95.0
Q ss_pred cccccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------CEEE
Q 019592 16 VHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------RVVL 79 (338)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------~~~~ 79 (338)
+.|++..|+++|| ++++|.+++|.||||||||||++.|++.+++. .+.+
T Consensus 18 ~~y~~~il~~vsl---------------~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~ 82 (214)
T 1sgw_A 18 VGYDKPVLERITM---------------TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82 (214)
T ss_dssp EESSSEEEEEEEE---------------EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred EEeCCeEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE
Confidence 4454434677777 99999999999999999999999999988752 2456
Q ss_pred EeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-ccccccccCcCCccCCCCccccCCCcEEEEecc
Q 019592 80 VNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGI 157 (338)
Q Consensus 80 l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~ 157 (338)
+.++. ++..++..++..+....+.. ..+.+.+.+.++.+.... ......+|.++.+++..+++.+.+++++++|||
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP 160 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYGV--KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 66664 34556766665543211111 112455667777765543 223347888999998888888899999999999
Q ss_pred ccccchHHH
Q 019592 158 LVFHDSRVR 166 (338)
Q Consensus 158 ~~~~d~~~~ 166 (338)
++++|+...
T Consensus 161 ts~LD~~~~ 169 (214)
T 1sgw_A 161 VVAIDEDSK 169 (214)
T ss_dssp TTTSCTTTH
T ss_pred CcCCCHHHH
Confidence 999987543
No 43
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.54 E-value=2.9e-15 Score=131.39 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=92.8
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .|+|||| ++++|.+++|.||||||||||++.|++.++|. |
T Consensus 31 ~~~y~~~~vL~~vsl---------------~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 31 KKSFGSLEVLKGINV---------------HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp EEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCH
T ss_pred EEEECCEEEEEeeEE---------------EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccH
Confidence 4555443 4677777 99999999999999999999999999988752 1
Q ss_pred ------EEEEeCCC-CCCCCCHHHHHHccc-cCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCcccc
Q 019592 77 ------VVLVNQDS-FYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 77 ------~~~l~~D~-~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++.++. ++..++..++..++. .....+.....+.+.+.++.+...... ....+|.++.+|+..+++.+
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 33444442 334445555544321 111111111223455666666554322 33478999999988888889
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|||++++|+....
T Consensus 176 ~~p~lllLDEPts~LD~~~~~ 196 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVG 196 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHH
T ss_pred CCCCEEEEeCCcccCCHHHHH
Confidence 999999999999999986543
No 44
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.54 E-value=3.7e-15 Score=129.25 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=97.5
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------- 75 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~----------------- 75 (338)
..+.|++. .|++||| ++++|.+++|.||||||||||++.|++.+.|.
T Consensus 12 l~~~y~~~~vl~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 12 LHVYYGAIHAIKGIDL---------------KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEETTEEEEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred EEEEECCeeEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHH
Confidence 35666554 4788999 99999999999999999999999999988751
Q ss_pred -----CEEEEeCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhc-cCC--ccccccccCcCCccCCCCcccc
Q 019592 76 -----RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 76 -----~~~~l~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 146 (338)
++.++.++. ++..++..++..+..... .+.......+.+.++.+. ... ......+|.++.+|+..+++.+
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 266777764 345567777766543211 111122234455555542 222 2234578999999988888889
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|||++++|+....
T Consensus 156 ~~p~lllLDEPts~LD~~~~~ 176 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVS 176 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHH
T ss_pred cCCCEEEEcCCcccCCHHHHH
Confidence 999999999999999886544
No 45
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=2.5e-15 Score=126.08 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=71.0
Q ss_pred cccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 261 LYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 261 ~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
+++. +||+++++++++||++|.+.+||++.+||+++|+||+++++|+++.+|+||+| .|.|..++ +++|+||||||
T Consensus 3 v~v~-~hp~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~~-~~~g~~~~g~~l~~V~ILra 79 (208)
T 2ehj_A 3 IVEV-KHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNG-PVEIDQIKGKKITVVPILRA 79 (208)
T ss_dssp EEEC-CCHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEEETTE-EEEEEEECSSCCEEEEBTTG
T ss_pred eEEc-CCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-cEEEEEecCCceEEEEeecC
Confidence 3444 45999999999999999999999999999999999999999999999999999 88999998 89999999997
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.53 E-value=3.3e-15 Score=130.41 Aligned_cols=138 Identities=13% Similarity=0.160 Sum_probs=100.9
Q ss_pred Ccccc-c-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCC
Q 019592 15 GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDS 84 (338)
Q Consensus 15 ~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------~~~~l~~D~ 84 (338)
.+.|+ + ..|+++|| ++++|.+++|.|+||||||||++.|++.+++. .+.++.++.
T Consensus 11 ~~~y~~~~~vl~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~ 75 (253)
T 2nq2_C 11 GFYYQAENFLFQQLNF---------------DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFF 75 (253)
T ss_dssp EEEETTTTEEEEEEEE---------------EEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCC
T ss_pred EEEeCCCCeEEEEEEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCC
Confidence 45554 3 34788888 99999999999999999999999999998752 467788874
Q ss_pred -CCCCCCHHHHHHccccCC-C---CcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEecc
Q 019592 85 -FYHNLTEQELARVHEYNF-D---HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGI 157 (338)
Q Consensus 85 -~~~~l~~~~~~~~~~~~~-~---~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~ 157 (338)
++..++..++..++...+ . .+...+.+.+.+.++.+...... ....+|.++.+++..+++.+.+++++++|||
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP 155 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345677777766543211 1 12222334566677766554322 3447899999998888888999999999999
Q ss_pred ccccchHHHh
Q 019592 158 LVFHDSRVRE 167 (338)
Q Consensus 158 ~~~~d~~~~~ 167 (338)
++++|+....
T Consensus 156 ts~LD~~~~~ 165 (253)
T 2nq2_C 156 TSALDLANQD 165 (253)
T ss_dssp STTSCHHHHH
T ss_pred cccCCHHHHH
Confidence 9999886543
No 47
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.53 E-value=4.4e-15 Score=130.74 Aligned_cols=131 Identities=15% Similarity=0.110 Sum_probs=96.6
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------CEEEEeCC
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------RVVLVNQD 83 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~------------------~~~~l~~D 83 (338)
.|+|+|| ++++|.+++|.|+||||||||++.|++.+++. .+.++.++
T Consensus 22 vl~~vsl---------------~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~ 86 (266)
T 2yz2_A 22 ALENVSL---------------VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQY 86 (266)
T ss_dssp EEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSS
T ss_pred eeeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEecc
Confidence 5788888 99999999999999999999999999988752 24566666
Q ss_pred C--CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC--Ccc--ccccccCcCCccCCCCccccCCCcEEEEecc
Q 019592 84 S--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG--QAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGI 157 (338)
Q Consensus 84 ~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~ 157 (338)
. ++..++..++..+....+ .+.....+.+.+.++.+... ... ....+|.++.+|+..+++.+.+++++++|||
T Consensus 87 ~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 165 (266)
T 2yz2_A 87 PEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165 (266)
T ss_dssp GGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred chhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 3 344567777665533222 12222345566777777665 322 3347899999998888888999999999999
Q ss_pred ccccchHHHhh
Q 019592 158 LVFHDSRVREL 168 (338)
Q Consensus 158 ~~~~d~~~~~~ 168 (338)
++++|+.....
T Consensus 166 ts~LD~~~~~~ 176 (266)
T 2yz2_A 166 LVGLDREGKTD 176 (266)
T ss_dssp TTTCCHHHHHH
T ss_pred cccCCHHHHHH
Confidence 99998875543
No 48
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.52 E-value=3.1e-15 Score=137.29 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=101.0
Q ss_pred cCCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q 019592 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------- 75 (338)
Q Consensus 13 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------- 75 (338)
+..+.|++. .|+|+|| +++++.+++|.||||||||||+++|++++.+.
T Consensus 8 ~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 8 DVWKVFGEVTAVREMSL---------------EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEETTEEEEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG
T ss_pred eEEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc
Confidence 345677665 4799999 99999999999999999999999999987652
Q ss_pred ---------CEEEEeCC-CCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCc
Q 019592 76 ---------RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 76 ---------~~~~l~~D-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~ 143 (338)
++.++.++ .++..++..++..++......+.....+.+.+.++.+...... ....+|.++.+|+..++
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 24455555 3445667777665543222222222234566677776654322 34479999999988888
Q ss_pred cccCCCcEEEEeccccccchHHHh
Q 019592 144 RRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+.+.+++++++|||++.+|+..+.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~ 176 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRV 176 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHH
T ss_pred HHhcCCCEEEECCCCccCCHHHHH
Confidence 889999999999999999986443
No 49
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.52 E-value=4.1e-15 Score=130.56 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=93.5
Q ss_pred CCcccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------
Q 019592 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------- 76 (338)
Q Consensus 14 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------- 76 (338)
..+.|++. .|+|||| ++++|.+++|.||||||||||++.|++.+.|. |
T Consensus 12 l~~~y~~~~vl~~vsl---------------~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 12 LHKRYGGHEVLKGVSL---------------QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK 76 (262)
T ss_dssp EEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECT
T ss_pred EEEEECCEEEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccc
Confidence 35666554 4789999 99999999999999999999999999988752 1
Q ss_pred ------------------EEEEeCCC-CCCCCCHHHHHHccc-cCCCCcccccHHHHHHHHHHhccCCc-c--ccccccC
Q 019592 77 ------------------VVLVNQDS-FYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKLRHGQA-V--DIPNYDF 133 (338)
Q Consensus 77 ------------------~~~l~~D~-~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~-~--~~~~~~~ 133 (338)
+.++.++. ++..++..++..++. .....+.....+.+.+.++.+..... . ....+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 156 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence 23333432 233445444443321 11111111122345566666655433 2 3347899
Q ss_pred cCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 134 ~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
++.+|+..+++.+.+++++|+|||++++|+....
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~ 190 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 9999988888889999999999999999886544
No 50
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.51 E-value=5.6e-15 Score=124.55 Aligned_cols=178 Identities=19% Similarity=0.277 Sum_probs=100.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCC-H--HHHHHccccCCCCcccccHHHHHHHH----
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT-E--QELARVHEYNFDHPDAFDTEKLLSSM---- 117 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~-~--~~~~~~~~~~~~~~~~~~~~~l~~~l---- 117 (338)
.+++.+|+|+|++||||||+++.|++. ++.+++.|.+++... . .+........|. .+.++...+.+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~-~g~i~~~~l~~~~~~~~ 79 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW----GYPVLDLDALAARARENKEEELKRLFPEAVV-GGRLDRRALARLVFSDP 79 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEE-TTEECHHHHHHHHTTSH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC----CCEEEcccHHHHHhcCChHHHHHHHHHHHHh-CCCcCHHHHHHHHhCCH
Confidence 356789999999999999999999995 588999998764332 1 111111011121 1233433332211
Q ss_pred ---HHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCcccc
Q 019592 118 ---EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (338)
Q Consensus 118 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~ 194 (338)
..+. .+..|.+. .+.+. .....+..++|+|+++.+ +..+.+.+|.+|||+++.+++++|+..|+..
T Consensus 80 ~~~~~l~---~~~~~~i~---~~~i~--~~~~~g~~~vi~d~~~l~-~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~-- 148 (203)
T 1uf9_A 80 ERLKALE---AVVHPEVR---RLLME--ELSRLEAPLVFLEIPLLF-EKGWEGRLHGTLLVAAPLEERVRRVMARSGL-- 148 (203)
T ss_dssp HHHHHHH---HHHHHHHH---HHHHH--HHHTCCCSEEEEECTTTT-TTTCGGGSSEEEEECCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHH---HHhChHHH---HHHHH--HhhhcCCCEEEEEeccee-ccCchhhCCEEEEEECCHHHHHHHHHHcCCC--
Confidence 0000 00112111 00000 001123679999998766 3455567899999999999999999988632
Q ss_pred CCCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 195 GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
+.+.....+... .+.+. +...||++|++++ +++++.+.|.+.+.
T Consensus 149 --~~~~~~~~i~~~-~~~~~-----~~~~ad~vId~~~----~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 149 --SREEVLARERAQ-MPEEE-----KRKRATWVLENTG----SLEDLERALKAVLA 192 (203)
T ss_dssp --TTHHHHHHHTTS-CCHHH-----HHHHCSEEECCSS----HHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHC-CChhH-----HHHhCCEEEECCC----CHHHHHHHHHHHHH
Confidence 233333333332 22221 1366899997663 45556666655543
No 51
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=99.51 E-value=7.9e-15 Score=122.98 Aligned_cols=73 Identities=19% Similarity=0.069 Sum_probs=69.6
Q ss_pred cccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 265 HSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 265 ~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
.+||+++++++++||++|.+.+||++.+||+++|+||+++++|+++.+|+||+| .+.|..++ +++|+||||||
T Consensus 5 ~~hp~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~~-~~~~~~~~g~~~~~V~ILra 78 (208)
T 2e55_A 5 LSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIG-NKRFNYLNEEEIVFVPILRA 78 (208)
T ss_dssp CCCHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEETTE-EEEEEECCGGGEEEEEEETT
T ss_pred cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCceeEEeCCCC-ceEeeeecCCcEEEEEEecc
Confidence 346999999999999999999999999999999999999999999999999999 88999997 89999999997
No 52
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.50 E-value=2.5e-15 Score=130.73 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=79.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEEEEeCCCCCCCCCHHHHHHccccCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVNQDSFYHNLTEQELARVHEYNF 102 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~~l~~D~~~~~l~~~~~~~~~~~~~ 102 (338)
++++|.+++|+|+||||||||++.|++.+.+. .+.++.++......+..++..++.
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~--- 107 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--- 107 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTC---
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccC---
Confidence 99999999999999999999999999988752 134555553322334444443321
Q ss_pred CCcccccHHHHHHHHHHhccCCcc-------------ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 103 DHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 103 ~~~~~~~~~~l~~~l~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+ ....+.+.+.+..+...... ....+|.++.+|+..+++.+.+++++++|||++++|+....
T Consensus 108 --~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~ 182 (247)
T 2ff7_A 108 --P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182 (247)
T ss_dssp --T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred --C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1 11223333344333221111 12368889999988888889999999999999999886544
No 53
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.50 E-value=2.2e-14 Score=123.21 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=50.9
Q ss_pred CCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCC--CHHHHHHHHhhcCcchhhhhccCcCcc-c
Q 019592 148 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKY-A 224 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~-a 224 (338)
....+++||+... ..+.+.+|.+||++++.+++++|+..+ ...+|. +.+....++..+..+.|..+..|.... +
T Consensus 122 ~~~~~vldg~~~~--~~~~~~~d~~i~l~~~~e~~~~R~~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~ 198 (227)
T 1cke_A 122 ELPGLIADGRDMG--TVVFPDAPVKIFLDASSEERAHRRMLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAAD 198 (227)
T ss_dssp CTTCEEEEESSCC--CCCCTTCSEEEEEECCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC-------------CCCCTT
T ss_pred hCCCEEEECCCcc--ceEecCCCEEEEEeCCHHHHHHHHHHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCC
Confidence 3467999998543 234456899999999999999997543 112232 455566666554444555555665444 3
Q ss_pred cEEecCCC-CcHHHHHHHHHHHH
Q 019592 225 DIIIPRGG-DNHVAIDLIVQHIR 246 (338)
Q Consensus 225 D~iI~~~~-~~~~~~~~~~~~i~ 246 (338)
+++|+++. +.+...+++.+.+.
T Consensus 199 ~~~Id~~~~~~~ev~~~I~~~l~ 221 (227)
T 1cke_A 199 ALVLDSTTLSIEQVIEKALQYAR 221 (227)
T ss_dssp CEEEETTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 48887763 32233344444443
No 54
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.49 E-value=3.1e-15 Score=133.69 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=100.2
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++||+|+|+. ..+.+.....++++|.+++|+|+||||||||++.|++.+.+. .+
T Consensus 52 ~~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 45778999999974 345677778899999999999999999999999999988762 36
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhcc---------CCc--c--ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQA--V--DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~---------~~~--~--~~~~~~~~~~~~~~~~~~ 144 (338)
.++.|+.+....+..++..++.... ..+.+.+.+..... +-. + ....+|.++.+|+..+++
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~------~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVTA------GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTTC------CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEecCCccCcccHHHHHHhhcccC------CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 7777776554556666655443221 12222233222211 111 1 113688888899888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++|+|+|++.+|+....
T Consensus 205 L~~~p~iLlLDEPts~LD~~~~~ 227 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSNER 227 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHH
Confidence 88999999999999999876443
No 55
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.48 E-value=6.3e-15 Score=127.51 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=83.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS 115 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (338)
++++|.+++|+|+||||||||++.|++.++|. .+.++.++.++..++..++..+... +. .. ....+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~-~~-~~--~~~~~~~ 102 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQ-LE-EP--YYRSVIQ 102 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSC-CC-TT--HHHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccc-cC-HH--HHHHHHH
Confidence 99999999999999999999999999988652 3677888876666677776655332 11 11 1111222
Q ss_pred H---HHHhccCC-------ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 116 S---MEKLRHGQ-------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 116 ~---l~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
. +..+.... ......+|.++.+|+..+++.+.+++++++|||++++|+....
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~ 164 (237)
T 2cbz_A 103 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164 (237)
T ss_dssp HTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHH
T ss_pred HHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 1 11121100 1123478889999988888888999999999999999876443
No 56
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.47 E-value=8.2e-15 Score=129.65 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=90.3
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~---------------- 76 (338)
.+.|++. .|+|||| ++++|.+++|.|+||||||||++.|++.+++. |
T Consensus 28 ~~~y~~~~vL~~isl---------------~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 28 GRMKQGKTILKKISW---------------QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEETTEEEEEEEEE---------------EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH
T ss_pred EEEECCEEEEEeeeE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH
Confidence 4556543 4688888 99999999999999999999999999988753 2
Q ss_pred ------EEEEeCCC---CCCCCCHHHHHHccccC----CCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCC
Q 019592 77 ------VVLVNQDS---FYHNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (338)
Q Consensus 77 ------~~~l~~D~---~~~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~ 141 (338)
+.++.++. +...++..++..++... +..+.....+.+.+.++.+...... ....+|.++.+|+..
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 22333321 11122444443332110 1111111223455666666553322 344789999999888
Q ss_pred CccccCCCcEEEEeccccccchHHHhh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVREL 168 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~~ 168 (338)
+++.+.+++++|+|||++++|+.....
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~ 199 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARES 199 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHH
Confidence 888899999999999999998875443
No 57
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.47 E-value=1.7e-14 Score=124.22 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=80.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS 115 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (338)
++++|.+++|.||||||||||++.|++.++|. .+.++.++......+..++..++.. + . .....+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~-~--~----~~~~~~ 102 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVS-Y--D----EYRYRS 102 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSC-C--C----HHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCC-c--C----hHHHHH
Confidence 99999999999999999999999999998762 3667888755434477776654321 1 1 111111
Q ss_pred HHHHh---------ccCCc--c--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 116 SMEKL---------RHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 116 ~l~~l---------~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+... ..+.. + ....+|.++.+|+..+++.+.+++++++|||++++|+....
T Consensus 103 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~ 167 (229)
T 2pze_A 103 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167 (229)
T ss_dssp HHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHH
Confidence 11111 11100 0 12478888888888888888999999999999999876443
No 58
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.46 E-value=7.5e-13 Score=111.47 Aligned_cols=163 Identities=14% Similarity=0.140 Sum_probs=90.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
+.+++.+|+|+|+|||||||+++.|++.++ ..+++.|++.... ........+.|+.+..+. ....+.....
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g---~~~i~~d~~~~~~--~~~~~~~g~~~~~~~~~~---~~~~~~~~~~- 95 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETG---LEFAEADAFHSPE--NIATMQRGIPLTDEDRWP---WLRSLAEWMD- 95 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHC---CEEEEGGGGSCHH--HHHHHHTTCCCCHHHHHH---HHHHHHHHHH-
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CeEEcccccccHH--HHHHHhcCCCCCCccccc---HHHHHHHHHH-
Confidence 446789999999999999999999999884 7888888765211 111112233343221111 0111111100
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhc------CeEEEEecCHHHHHHHHHhhCccccCCC
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM------NMKIFVDTDADVRLARRIRRDTVEKGRD 197 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~------d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 197 (338)
........+|+|..+. .+..+..+ ..+|||++|.+++++|+..|+... ..
T Consensus 96 --------------------~~~~~g~~viid~~~~--~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~--~~ 151 (200)
T 4eun_A 96 --------------------ARADAGVSTIITCSAL--KRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF--MP 151 (200)
T ss_dssp --------------------HHHHTTCCEEEEECCC--CHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS--SC
T ss_pred --------------------HHHhcCCCEEEEchhh--hHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC--CC
Confidence 0111122345555432 23333322 267999999999999998886432 23
Q ss_pred HHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhcc
Q 019592 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (338)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~ 251 (338)
.+.+..++.... .++...+|++|+++. +++++++.|.+.+..
T Consensus 152 ~~~l~~~~~~~~--------~~~~~~~~~~Id~~~----~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 152 ASLLQSQLATLE--------ALEPDESGIVLDLRQ----PPEQLIERALTWLDI 193 (200)
T ss_dssp GGGHHHHHHHCC--------CCCTTSCEEEEETTS----CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhC--------CCCCCCCeEEEECCC----CHHHHHHHHHHHHHh
Confidence 344444444432 233456899998763 456666666666543
No 59
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.46 E-value=3.1e-14 Score=122.07 Aligned_cols=187 Identities=18% Similarity=0.223 Sum_probs=108.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC--
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-- 123 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-- 123 (338)
.++.+|+|.|++||||||+++.|++.++ +.+++.|.+|+.+...... .+... -+.+.+.+.+..+...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d~g~~~r~~~~~~~~--~gi~~-----~d~~~~~~~~~~~~~~~~ 76 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG---ARYLDTGAMYRIATLAVLR--AGADL-----TDPAAIEKAAADAEIGVG 76 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHHHH--HTCCT-----TCHHHHHHHHHTCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCCcHHHHHHHHHHH--cCCCc-----hhhHHHHHHHHhCCEEEe
Confidence 4578999999999999999999999886 7888888876443211111 11111 1222233333321110
Q ss_pred -----Cccc------------------------cccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEE
Q 019592 124 -----QAVD------------------------IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIF 174 (338)
Q Consensus 124 -----~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~ 174 (338)
..+. .|.....+.. .+.........+|+||-..+. .+.+..+++||
T Consensus 77 ~~~~~~~v~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~---~qr~~a~~~~~~V~~GRd~gt--~V~pda~lkif 151 (233)
T 3r20_A 77 SDPDVDAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVD---IQRKLATEGGRVVVEGRDIGT--VVLPDADVKIF 151 (233)
T ss_dssp CCTTSCCEEETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHH---HHHHHHTSSSCEEEEESSCCC--CCCTTCSEEEE
T ss_pred ecCCCcEEEECCeehhhhhcchHHHHHHHHHhcchHHHHHHHH---HHHHHHHhcCcEEEeccccee--EEcCCCCEEEE
Confidence 0000 0000000000 001112221568889875541 12234679999
Q ss_pred EecCHHHHHHHHHhhCcc-ccCCCHHHHHHHHhhcCcchhhhhccCcCcccc-EEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 175 VDTDADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 175 l~~~~~~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
|++|.++|.+|+.++... ..+.+.+........+...+...+..|.....| ++|+++.. +++++++.|.+.+.
T Consensus 152 l~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l---~iee~v~~I~~~i~ 226 (233)
T 3r20_A 152 LTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDM---DQAQVIAHLLDLVT 226 (233)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTS---CHHHHHHHHHHHC-
T ss_pred EECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCC---CHHHHHHHHHHHHH
Confidence 999999999999874211 124567777777777777677788899887777 88876643 45666666665553
No 60
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.46 E-value=1.1e-14 Score=128.51 Aligned_cols=147 Identities=9% Similarity=0.043 Sum_probs=94.7
Q ss_pred ccccCccccccC-CCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEE
Q 019592 21 FHMDGLEVRNKE-TGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVV 78 (338)
Q Consensus 21 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~ 78 (338)
+.++||+++|.. ...+.+.....++++|.+++|+|+||||||||++.|++.+.+. .+.
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 96 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVA 96 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEE
Confidence 556777777754 1234555666699999999999999999999999999988752 245
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCccccc----HHHHHHHHHHhc--cCC--ccccccccCcCCccCCCCccccCCCc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLR--HGQ--AVDIPNYDFKSYKNNVFPARRVNPSD 150 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~l~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
++.++..+...+..++..++........... ...+.+.+..+. ... ......+|.++.+|+..+++.+.+++
T Consensus 97 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 176 (271)
T 2ixe_A 97 AVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPR 176 (271)
T ss_dssp EECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCS
T ss_pred EEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 6666643333455565544321111100000 011223344331 111 12334788999999888888899999
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++++|||++++|+....
T Consensus 177 lllLDEPts~LD~~~~~ 193 (271)
T 2ixe_A 177 LLILDNATSALDAGNQL 193 (271)
T ss_dssp EEEEESTTTTCCHHHHH
T ss_pred EEEEECCccCCCHHHHH
Confidence 99999999999876543
No 61
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.45 E-value=1.8e-14 Score=125.22 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=83.5
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEE
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLV 80 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--------------------~~~l 80 (338)
.|++||| ++++|.+++|.|+||||||||++.|++.+.+. | +.++
T Consensus 17 vl~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 17 ILRDISF---------------EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp SEEEEEE---------------EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred eEEEeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 4677777 99999999999999999999999999988752 2 3344
Q ss_pred eCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc-------------ccccccCcCCccCCCCccccC
Q 019592 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPARRVN 147 (338)
Q Consensus 81 ~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 147 (338)
.++..+...+..++..++. .+ ......+.+.++.+...... ....+|.++.+|+..+++.+.
T Consensus 82 ~q~~~l~~~tv~enl~~~~----~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGL----EG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCT----TS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred cCCCccccccHHHHHhhhc----cC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 4443222223334333210 11 12334455555555443222 123688888888888888889
Q ss_pred CCcEEEEeccccccchHH
Q 019592 148 PSDVILLEGILVFHDSRV 165 (338)
Q Consensus 148 ~~~vlIldg~~~~~d~~~ 165 (338)
+++++++|||++++|+..
T Consensus 157 ~p~lllLDEPts~LD~~~ 174 (243)
T 1mv5_A 157 NPKILMLDEATASLDSES 174 (243)
T ss_dssp CCSEEEEECCSCSSCSSS
T ss_pred CCCEEEEECCcccCCHHH
Confidence 999999999999998753
No 62
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.43 E-value=1.4e-12 Score=109.97 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=88.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (338)
..+.+|+|+|++||||||+++.|++.++ ..+++.|.++....... .. ....|.. ......+..+..
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~~~~~~~~~-~~-~g~~~~~------~~~~~~~~~l~~--- 81 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDALHPPENIRK-MS-EGIPLTD------DDRWPWLAAIGE--- 81 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGGCCHHHHHH-HH-HTCCCCH------HHHHHHHHHHHH---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcCcchhhHHH-Hh-cCCCCCc------hhhHHHHHHHHH---
Confidence 3467999999999999999999999885 78888888753211111 11 1112211 111112221111
Q ss_pred cccccccCcCCccCCCCccccCCCcEEEEeccccccc--hHHHhhc---CeEEEEecCHHHHHHHHHhhCccccCCCHHH
Q 019592 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (338)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d--~~~~~~~---d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~ 200 (338)
.+.....+|+|+.+.... ..+.... +.+|||++|.+++++|+..|+.. ....+.
T Consensus 82 -------------------~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~--~~~~~~ 140 (202)
T 3t61_A 82 -------------------RLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH--FMPSSL 140 (202)
T ss_dssp -------------------HHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS--CCCHHH
T ss_pred -------------------HHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc--CCCHHH
Confidence 002233466776553211 1222222 48999999999999999988632 122333
Q ss_pred HHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhcc
Q 019592 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (338)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~ 251 (338)
+..++.... .++...++++|+++.+ ++++.+.|.+.+..
T Consensus 141 ~~~~~~~~~--------~~~~~~~~~~Id~~~~----~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 141 LQTQLETLE--------DPRGEVRTVAVDVAQP----LAEIVREALAGLAR 179 (202)
T ss_dssp HHHHHHHCC--------CCTTSTTEEEEESSSC----HHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--------CCCCCCCeEEEeCCCC----HHHHHHHHHHHHHH
Confidence 334443322 2234668999987743 34444444444433
No 63
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.43 E-value=3.2e-13 Score=110.72 Aligned_cols=170 Identities=14% Similarity=0.179 Sum_probs=87.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 128 (338)
++|+|+|++||||||+++.| +.++ +.+++.|++++.. ....+ ....+...+...+... .+.....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~~~~----~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~ 66 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVVRKR----YSIEA------KPGERLMDFAKRLREI-YGDGVVA 66 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHHHHH----HHHHC---------CCHHHHHHHHHHH-HCTTHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHHHHH----HHhcC------CChhHHHHHHHHHHhh-CCHHHHH
Confidence 48999999999999999999 6654 7777776544211 11100 0011111111111110 0100000
Q ss_pred ccccCcCCccCCCCccccCCCcEEEEeccccccc-hHHHhhc---CeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHH
Q 019592 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d-~~~~~~~---d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (338)
... .. .......+.+|+||.....+ ..+.+.+ +.+|||++|.+++++|+..|+....+...+.+...
T Consensus 67 ~~~----~~-----~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r 137 (179)
T 3lw7_A 67 RLC----VE-----ELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRR 137 (179)
T ss_dssp HHH----HH-----HHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHH
T ss_pred HHH----HH-----HHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHH
Confidence 000 00 00013556799999622111 1233333 38999999999999999999755445566666655
Q ss_pred HhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
+....... ..++...||++|+|+++.+...+++.+.+.
T Consensus 138 ~~~~~~~~----~~~~~~~ad~vId~~~~~~~~~~~i~~~l~ 175 (179)
T 3lw7_A 138 DREELKLG----IGEVIAMADYIITNDSNYEEFKRRCEEVTD 175 (179)
T ss_dssp HHHHHHHT----HHHHHHTCSEEEECCSCHHHHHHHHHHHHH
T ss_pred HHhhhccC----hHhHHHhCCEEEECCCCHHHHHHHHHHHHH
Confidence 43211100 122357899999887533333344444433
No 64
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.43 E-value=7.9e-14 Score=136.11 Aligned_cols=144 Identities=12% Similarity=0.144 Sum_probs=101.7
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++||+++|++...+.+.....++++|.+++|+|+|||||||+++.|++.++|. .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 357789999999754456777888899999999999999999999999999988752 35
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc-------------ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~ 144 (338)
.++.|+.+..+.+..++..++.. +. .+.+.+.+.++.....+.+ ....+|.|+.+|+..+++
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~----~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 420 ALVSQNVHLFNDTIANNIAYAAE----GE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred EEEcCCCccccccHHHHHhccCC----CC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 56666654434455555544321 11 2233444444433221111 113688999999888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++++|||++.+|+....
T Consensus 495 l~~~p~illlDEpts~LD~~~~~ 517 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESER 517 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHH
Confidence 89999999999999999876443
No 65
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.42 E-value=2.7e-14 Score=125.17 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=89.7
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------EE-EEe
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-----------------VV-LVN 81 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-----------------~~-~l~ 81 (338)
..|+++|| +++ +.+++|.|+||||||||++.|++.+ |. | +. ++.
T Consensus 19 ~il~~vsl---------------~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~ 81 (263)
T 2pjz_A 19 FSLENINL---------------EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLP 81 (263)
T ss_dssp EEEEEEEE---------------EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCG
T ss_pred eeEEeeeE---------------EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeC
Confidence 35799999 999 9999999999999999999999988 62 1 33 444
Q ss_pred CCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC-Ccc--ccccccCcCCccCCCCccccCCCcEEEEeccc
Q 019592 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-QAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (338)
Q Consensus 82 ~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~ 158 (338)
++..+ .++..++..+....+ ..+.+.+.+.++.+... ... ....+|.++.+|+..+++.+.+++++++|||+
T Consensus 82 Q~~~l-~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 82 EAYEI-GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp GGSCT-TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred CCCcc-CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 44333 445555443322111 12345566777777655 322 34478899999988888888999999999999
Q ss_pred cccchHHHh
Q 019592 159 VFHDSRVRE 167 (338)
Q Consensus 159 ~~~d~~~~~ 167 (338)
+++|+..+.
T Consensus 157 s~LD~~~~~ 165 (263)
T 2pjz_A 157 ENVDAARRH 165 (263)
T ss_dssp TTCCHHHHH
T ss_pred cccCHHHHH
Confidence 999886544
No 66
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=99.42 E-value=7.3e-14 Score=117.94 Aligned_cols=77 Identities=25% Similarity=0.317 Sum_probs=71.3
Q ss_pred CcccccccceeeeceeeeccCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeeC-CCeeEEEeecC
Q 019592 260 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 338 (338)
Q Consensus 260 ~~~~~~~~~~l~~~~~~lrd~~t~~~~f~~~~~~l~~~l~~~~~~~l~~~~~~v~tp~~~~~~~~~~~-~~~~~v~ilra 338 (338)
++++.+ ||+++++++++||++|++.+||++.++|+++|+||+++++|+++..|+||+| .+.|..++ +++|+||||||
T Consensus 3 ~v~~~~-~p~~~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~V~tPl~-~~~~~~~~~~~~~vV~Ilr~ 80 (209)
T 1i5e_A 3 KVYVFD-HPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVS-KARAKVIAGKKLGVIPILRA 80 (209)
T ss_dssp CEEECC-CHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHGGGCCEEEEEEECSSC-EEEEEEECCCCEEEEEBTTG
T ss_pred CeEEcC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCc-eeeeeEecCCceEEEEEecC
Confidence 455544 5999999999999999999999999999999999999999999999999998 88899887 89999999996
No 67
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.41 E-value=2.7e-14 Score=124.50 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=82.0
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHH--hCC-CCEEEEeCCCC-----
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ--LHD-QRVVLVNQDSF----- 85 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~--l~~-~~~~~l~~D~~----- 85 (338)
.+.|++. .|+|||| ++++|.+++|.|+||||||||++.|++. +.+ .|-..++..+.
T Consensus 10 ~~~y~~~~vl~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 10 WASIDGETILKGVNL---------------VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74 (250)
T ss_dssp EEEETTEEEEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCH
T ss_pred EEEECCEEEEeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCH
Confidence 4566543 4789999 9999999999999999999999999997 433 12223322111
Q ss_pred -----------------CCCCCHHHHHHcccc---CCCCcccccHHHHHHHHHHhccC-Ccc--cccc-ccCcCCccCCC
Q 019592 86 -----------------YHNLTEQELARVHEY---NFDHPDAFDTEKLLSSMEKLRHG-QAV--DIPN-YDFKSYKNNVF 141 (338)
Q Consensus 86 -----------------~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~-~~~--~~~~-~~~~~~~~~~~ 141 (338)
+..++..++..+... ....+.......+.+.++.+... ... .... +|.++.+|+..
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 122222222211100 00000000112344555555542 222 2235 89999999888
Q ss_pred CccccCCCcEEEEeccccccchHHHh
Q 019592 142 PARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 142 ~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+++.+.+++++|+|||++++|+....
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 88888999999999999999886544
No 68
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.40 E-value=5.4e-14 Score=123.29 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=89.0
Q ss_pred ccccCccccccCCC-CCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------CEEE
Q 019592 21 FHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RVVL 79 (338)
Q Consensus 21 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------------------~~~~ 79 (338)
+.++||+++|.... .+.+.....++++|.+++|.|+||||||||++.|++.+.+. .+.+
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 97 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGI 97 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEE
Confidence 44566666654321 23444555599999999999999999999999999987642 2445
Q ss_pred EeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC-------c------cccccccCcCCccCCCCcccc
Q 019592 80 VNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-------A------VDIPNYDFKSYKNNVFPARRV 146 (338)
Q Consensus 80 l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-------~------~~~~~~~~~~~~~~~~~~~~~ 146 (338)
+.++..+...+..++..++.. . ...+.+.+.++.+.... . .....+|.++.+|+..+++.+
T Consensus 98 v~Q~~~l~~~tv~enl~~~~~-----~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 98 VPQDTILFNETIKYNILYGKL-----D-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp ECSSCCCCSEEHHHHHHTTCT-----T-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EcCCCcccccCHHHHHhccCC-----C-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 555533323344444433211 0 11223333333222110 0 112368888889988888888
Q ss_pred CCCcEEEEeccccccchHHHh
Q 019592 147 NPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 147 ~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+++++++|||++++|+....
T Consensus 172 ~~p~lllLDEPts~LD~~~~~ 192 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEY 192 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHH
T ss_pred cCCCEEEEECccccCCHHHHH
Confidence 999999999999999886543
No 69
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.39 E-value=6.3e-14 Score=121.90 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=90.4
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--------------------EEEE
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--------------------VVLV 80 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--------------------~~~l 80 (338)
..|+++|| ++++|.+++|.|+||||||||++.|++.+++.| +.++
T Consensus 14 ~vl~~vsl---------------~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 14 TRLGPLSG---------------EVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp TTEEEEEE---------------EEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEE
Confidence 45788999 999999999999999999999999999886521 3445
Q ss_pred eCCC-CCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCc-------
Q 019592 81 NQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD------- 150 (338)
Q Consensus 81 ~~D~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------- 150 (338)
.++. ++..++..++..+..... ...+.+.+.++.+...... ....+|.++.+|+..+++.+.+++
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHDK-----TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSST-----TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred CCCCccCCCCcHHHHHHHhhccC-----CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 5543 233455555554432111 1244556677766554322 344788899999877778888888
Q ss_pred EEEEeccccccchHHHh
Q 019592 151 VILLEGILVFHDSRVRE 167 (338)
Q Consensus 151 vlIldg~~~~~d~~~~~ 167 (338)
++++|||++++|+....
T Consensus 154 lllLDEPts~LD~~~~~ 170 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQS 170 (249)
T ss_dssp EEEESSTTTTCCHHHHH
T ss_pred EEEEECCcccCCHHHHH
Confidence 99999999999886543
No 70
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.39 E-value=5.2e-14 Score=137.25 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=104.5
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++|++++|++...+.+.....++++|.+++|+|||||||||+++.|.+.++|. .+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 457789999999887778888888899999999999999999999999999998761 46
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhc---------cCCc--c--ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQA--V--DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~---------~~~~--~--~~~~~~~~~~~~~~~~~~ 144 (338)
.++.|+.+..+.+..++..++.. . ...+.+.+.++... .|-+ + .-..+|.|+.+|+..+++
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRP-----T-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCS-----S-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEEeCCCccCcccHHHHHhcCCC-----C-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 78888876655577776655432 1 11223333332221 1111 1 112588888899888888
Q ss_pred ccCCCcEEEEeccccccchHHH
Q 019592 145 RVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.+++++++|||++.+|+...
T Consensus 492 l~~~p~illlDEpts~LD~~~~ 513 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLESE 513 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHHH
T ss_pred HHcCCCEEEEECccccCCHHHH
Confidence 8899999999999999987643
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.39 E-value=3e-14 Score=150.54 Aligned_cols=179 Identities=12% Similarity=0.150 Sum_probs=127.1
Q ss_pred cccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------C
Q 019592 18 FSGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------Q 75 (338)
Q Consensus 18 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~ 75 (338)
.+.+.++||+|+||+. ..|.+.....++++|..|||+|+|||||||+++.|.+.+.| .
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4678899999999975 45788999999999999999999999999999999999876 3
Q ss_pred CEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhcc---------CCcccc----ccccCcCCccCCCC
Q 019592 76 RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVDI----PNYDFKSYKNNVFP 142 (338)
Q Consensus 76 ~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~---------~~~~~~----~~~~~~~~~~~~~~ 142 (338)
.+.+++||.+.-+-+..++..++. +|.....+.+.+.++.... |-+..+ ..+|.|++|++..+
T Consensus 1154 ~i~~V~Qdp~LF~gTIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDCSIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp TEEEECSSCCCCSEEHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred heEEECCCCEeeCccHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence 578889998876666777655432 2334455555555543322 211111 24777788888788
Q ss_pred ccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCc
Q 019592 143 ARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKK 222 (338)
Q Consensus 143 ~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~ 222 (338)
++.+.+++++|+||+++.+|+.. |..+++.+++ ...+++...+.|.... ..
T Consensus 1230 RAllr~~~ILiLDEaTSaLD~~t--------------E~~Iq~~l~~--~~~~~TvI~IAHRLsT-------------i~ 1280 (1321)
T 4f4c_A 1230 RALVRNPKILLLDEATSALDTES--------------EKVVQEALDR--AREGRTCIVIAHRLNT-------------VM 1280 (1321)
T ss_dssp HHHHSCCSEEEEESCCCSTTSHH--------------HHHHHHHHTT--TSSSSEEEEECSSSST-------------TT
T ss_pred HHHHhCCCEEEEeCccccCCHHH--------------HHHHHHHHHH--HcCCCEEEEeccCHHH-------------HH
Confidence 88899999999999999986653 4444455544 2345555555554322 47
Q ss_pred cccEEec
Q 019592 223 YADIIIP 229 (338)
Q Consensus 223 ~aD~iI~ 229 (338)
.||.|+.
T Consensus 1281 ~aD~I~V 1287 (1321)
T 4f4c_A 1281 NADCIAV 1287 (1321)
T ss_dssp TCSEEEE
T ss_pred hCCEEEE
Confidence 7896664
No 72
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.39 E-value=7.1e-14 Score=128.88 Aligned_cols=149 Identities=11% Similarity=0.190 Sum_probs=96.1
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHcc
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVH 98 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~ 98 (338)
+.+.++||+++|++...+.+.....+++++.+++|.||||||||||+++|++++...|-..++..+. ..+...+.....
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i-~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSW-DSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBT-TSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEEC-CcCChHHHhCCE
Confidence 4566788888886555566677777999999999999999999999999999765322233332221 112222222222
Q ss_pred ccCCCCcc--------------cccHHHHHHHHHHhccCCcc-ccc-c-----------ccCcCCccCCCCccccCCCcE
Q 019592 99 EYNFDHPD--------------AFDTEKLLSSMEKLRHGQAV-DIP-N-----------YDFKSYKNNVFPARRVNPSDV 151 (338)
Q Consensus 99 ~~~~~~~~--------------~~~~~~l~~~l~~l~~~~~~-~~~-~-----------~~~~~~~~~~~~~~~~~~~~v 151 (338)
.+.|+++. ....+.+.+.++.+...... ..| . +|.++.+|+..+++.+.++++
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 22233221 12233445555554432211 122 2 889999998888888999999
Q ss_pred EEEeccccccchHHHhh
Q 019592 152 ILLEGILVFHDSRVREL 168 (338)
Q Consensus 152 lIldg~~~~~d~~~~~~ 168 (338)
+++|||++.+|+..+..
T Consensus 177 LLLDEPts~LD~~~~~~ 193 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQI 193 (390)
T ss_dssp EEEESHHHHSCHHHHHH
T ss_pred EEEeCCccCCCHHHHHH
Confidence 99999999998876543
No 73
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=113.60 Aligned_cols=119 Identities=15% Similarity=0.235 Sum_probs=69.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCH------HHHHHccccCCCCcccccHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE------QELARVHEYNFDHPDAFDTEKLLSSME 118 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~ 118 (338)
.+++.+|+|+|++||||||+++.|++.++ +.+++.|++++.... ...... +........+.+...+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~----~~~g~~~~~~~~~~~~~ 81 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREELASESERSKLIRDI----MERGDLVPSGIVLELLK 81 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHH----HHTTCCCCHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHhCCHHHHHHHHH----HHcCCcCCHHHHHHHHH
Confidence 34578999999999999999999999886 788888776522110 000000 00000011111111111
Q ss_pred HhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccch--HHHh---hcCeEEEEecCHHHHHHHHHhhCc
Q 019592 119 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RVRE---LMNMKIFVDTDADVRLARRIRRDT 191 (338)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~--~~~~---~~d~~i~l~~~~~~~~~R~~~R~~ 191 (338)
... .........+|+||.....+. .+.. .+|.+|||++|.+++.+|+..|+.
T Consensus 82 ~~i---------------------~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 82 EAM---------------------VASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp HHH---------------------HHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred HHH---------------------hcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 000 011124567899985432111 1222 468999999999999999998863
No 74
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.39 E-value=1e-13 Score=122.01 Aligned_cols=138 Identities=12% Similarity=0.020 Sum_probs=88.5
Q ss_pred Ccccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-C---------------
Q 019592 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-Q--------------- 75 (338)
Q Consensus 15 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l--~~-~--------------- 75 (338)
.+.|++. .|+|||| ++++|.+++|.|+||||||||++.|++.+ .+ .
T Consensus 27 ~~~y~~~~vl~~vsl---------------~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 27 HVSVEDKAILRGLSL---------------DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp EEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred EEEECCEEEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 4555443 4677777 99999999999999999999999999974 22 1
Q ss_pred ------CEEEEeCCC-CCCCCCHHHHHHccc--c--CCCC---cccccHHHHHHHHHHhccCC-cc-ccc--cccCcCCc
Q 019592 76 ------RVVLVNQDS-FYHNLTEQELARVHE--Y--NFDH---PDAFDTEKLLSSMEKLRHGQ-AV-DIP--NYDFKSYK 137 (338)
Q Consensus 76 ------~~~~l~~D~-~~~~l~~~~~~~~~~--~--~~~~---~~~~~~~~l~~~l~~l~~~~-~~-~~~--~~~~~~~~ 137 (338)
++.++.++. ++..++..++..... . .+.. +.......+.+.++.+.... .. ..+ .+|.++.+
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q 171 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 171 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 134445542 233344433322110 0 0000 00011234556677666542 22 222 39999999
Q ss_pred cCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 138 NNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 138 ~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
|+..+++.+.+++++|+|||++++|+....
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~ 201 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLDIDALK 201 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 988888888999999999999999886544
No 75
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.38 E-value=8.1e-13 Score=114.25 Aligned_cols=176 Identities=20% Similarity=0.282 Sum_probs=93.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhcc-
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH- 122 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~- 122 (338)
..+++.+|+|+|++||||||+++.|++.++ +.+++.|.+++....... . ....++. .+.+.+.+..+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg---~~~~d~d~~~~~~~~~~~-~-~g~~~~~-----~~~~~~~~~~~~~~ 81 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFG---FTYLDTGAMYRAATYMAL-K-NQLGVEE-----VEALLALLDQHPIS 81 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHHH-H-TTCCTTC-----HHHHHHHHHHSCCE
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcC---CceecCCCeeEcceeeee-c-cCCCccc-----HHHHHHHHHhcccc
Confidence 456788999999999999999999999876 788888877632110000 0 1111111 1122222221110
Q ss_pred -------CCcccc-cc-ccCcCCc------------------cCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEE
Q 019592 123 -------GQAVDI-PN-YDFKSYK------------------NNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFV 175 (338)
Q Consensus 123 -------~~~~~~-~~-~~~~~~~------------------~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l 175 (338)
+..+.. -. +...... .+......+.....+++||.... ..+...+|.+|||
T Consensus 82 f~~~~~~~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~--~~~l~~~d~vi~L 159 (236)
T 1q3t_A 82 FGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIG--TVVLPQAELKIFL 159 (236)
T ss_dssp EEEETTTEEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCS--SSSGGGCSEEEEE
T ss_pred ccccCCccceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcch--hhhccCCCEEEEE
Confidence 000000 00 0000000 00000001223456778987653 2244567999999
Q ss_pred ecCHHHHHHHHHhhCccccC--CCHHHHHHHHhhcCcchhhhhccCcCcccc-EEecCCC
Q 019592 176 DTDADVRLARRIRRDTVEKG--RDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGG 232 (338)
Q Consensus 176 ~~~~~~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~ 232 (338)
+++.+++++|++.|. ..++ .+.+.....+..+..+....++.|....+| ++|++++
T Consensus 160 ~a~~e~~~~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~ 218 (236)
T 1q3t_A 160 VASVDERAERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTG 218 (236)
T ss_dssp ECCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSS
T ss_pred ECCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCC
Confidence 999999999985431 1222 245555555554444444445566666666 8888774
No 76
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.38 E-value=9e-14 Score=135.71 Aligned_cols=144 Identities=12% Similarity=0.117 Sum_probs=103.3
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++|++++|++...+.+.....++++|.+++|+|+|||||||+++.|++.++|. .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 357789999999754456778888899999999999999999999999999998761 35
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCc-----------c--ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA-----------V--DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-----------~--~~~~~~~~~~~~~~~~~~ 144 (338)
.++.|+.+..+.+..++..++.. +. .+.+.+.+.++.....+. + ....+|.|+.+|+..+++
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~----~~-~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 420 ALVSQNVHLFNDTVANNIAYART----EE-YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEECSSCCCCSSBHHHHHHTTTT----SC-CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred eEEccCCcCCCCCHHHHHhccCC----CC-CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 67777765544566666654321 11 223344444443222111 1 113688888898888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++++|||++.+|+....
T Consensus 495 l~~~p~illlDEpts~LD~~~~~ 517 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESER 517 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHH
T ss_pred HHhCCCEEEEECccccCCHHHHH
Confidence 88999999999999999876544
No 77
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.38 E-value=1.5e-13 Score=119.47 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCCC---cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 44 LHRQ---PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~---~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+ +.+|+|+|++||||||+++.|++.++ +.+++.|.++
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~d~~~ 83 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDCDTLI 83 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeCcHHH
Confidence 8887 99999999999999999999999886 7888887654
No 78
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.38 E-value=1.5e-12 Score=109.91 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=86.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC------
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG------ 123 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------ 123 (338)
+|+|+|++||||||+++.|++.++ +.+++.|.+++....... .....++++ ..+.+.+..+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg---~~~~d~d~~~~~~~~~~~--~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG---VPYLSSGLLYRAAAFLAL--RAGVDPGDE-----EGLLALLEGLGVRLLAQAE 73 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHHHHH--HHTCCTTCH-----HHHHHHHHHTTCEEECCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CceeccchHHHhhhhhhH--hcCCCCCCH-----HHHHHHHHhCceeeeecCC
Confidence 899999999999999999999886 788888877633211100 011112211 2222333322110
Q ss_pred -Ccccc---ccccCc-------------CCccC----CCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHH
Q 019592 124 -QAVDI---PNYDFK-------------SYKNN----VFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVR 182 (338)
Q Consensus 124 -~~~~~---~~~~~~-------------~~~~~----~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~ 182 (338)
..+.. ..+... .+..+ ........ ..+|+||+..+ ..+.+.+|++|||++|.+++
T Consensus 74 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~--~~~~~~~d~~i~l~a~~e~~ 149 (208)
T 3ake_A 74 GNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG--TAVFPEAAHKFYLTASPEVR 149 (208)
T ss_dssp CCEEEETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC--CCCCTTCSEEEEEECCHHHH
T ss_pred CceEEECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee--EEEecCCcEEEEEECCHHHH
Confidence 00000 000000 00000 00000012 57899999866 23445689999999999999
Q ss_pred HHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCcccc-EEecCCC
Q 019592 183 LARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGG 232 (338)
Q Consensus 183 ~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~ 232 (338)
++|+..|.. .+.+.....+..+.. .|..+. ...+| ++|++++
T Consensus 150 ~~R~~~r~~----~~~~~~~~~~~~R~~-~~~~~~---~~~ad~~~Id~~~ 192 (208)
T 3ake_A 150 AWRRARERP----QAYEEVLRDLLRRDE-RDKAQS---APAPDALVLDTGG 192 (208)
T ss_dssp HHHHHHTSS----SCHHHHHHHHHHHHH-TC--CC---CCCTTCEEEETTT
T ss_pred HHHHHhhcc----cCHHHHHHHHHHHHH-HHhhcc---cCCCCEEEEECCC
Confidence 999998863 233444444433211 111110 45677 9998774
No 79
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.37 E-value=1.6e-11 Score=100.83 Aligned_cols=161 Identities=15% Similarity=0.179 Sum_probs=86.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHH-ccccCCCCcccccHHHHHHHHHHhccC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
..++.+|+|+|++||||||+++.|++.++ ..+++.|.+.+. ..... .....+..+ .....+..+..
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~g---~~~i~~d~~~~~---~~~~~~~~g~~~~~~------~~~~~~~~~~~- 71 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPR---RNIEKMASGEPLNDD------DRKPWLQALND- 71 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGGCCH---HHHHHHHTTCCCCHH------HHHHHHHHHHH-
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhhC---cEEEeCccccch---HHHHHhhcCcCCCcc------ccccHHHHHHH-
Confidence 35689999999999999999999999874 788888876531 11111 112222211 11111111100
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccc--hHHHhhc-C-eEEEEecCHHHHHHHHHhhCccccCCCHH
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVRELM-N-MKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d--~~~~~~~-d-~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 199 (338)
. . .........+|+|..+.... ..+.+.. + .+|||++|.+++++|+..|+.... ...
T Consensus 72 --~----~-----------~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~--~~~ 132 (175)
T 1knq_A 72 --A----A-----------FAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF--KTQ 132 (175)
T ss_dssp --H----H-----------HHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC--CHH
T ss_pred --H----H-----------HHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCC--chH
Confidence 0 0 00011123456665432210 1222222 5 799999999999999998863321 122
Q ss_pred HHHHHHhhcCcchhhhhccC-cCccccEEecCCCCcHHHHHHHHHHHHHHh
Q 019592 200 TVLDQYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~-~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
....++.... .+ +...+|++|+++. +++++.+.|.+.+
T Consensus 133 ~~~~~~~~~~--------~~~~~~~~~~~Id~~~----~~~~~~~~i~~~l 171 (175)
T 1knq_A 133 MLVTQFETLQ--------EPGADETDVLVVDIDQ----PLEGVVASTIEVI 171 (175)
T ss_dssp HHHHHHHHCC--------CCCTTCTTEEEEECSS----CHHHHHHHHHHHH
T ss_pred HHHHHHHhhh--------CcccCCCCeEEEeCCC----CHHHHHHHHHHHH
Confidence 2333332221 12 3466899998763 3445555555443
No 80
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.37 E-value=1.8e-12 Score=108.07 Aligned_cols=38 Identities=32% Similarity=0.512 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+.+|+|+|++||||||+++.|++.++ +.+++.|++.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~ 41 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLL 41 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHH
Confidence 3468999999999999999999999876 7888877654
No 81
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.37 E-value=4e-13 Score=113.33 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=86.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
.+++|.+++|+|||||||||++++|++.++ .+ .+......+...... ..-..+.|.++.. +..... .+
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~---~~ 70 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA--EI-KISISHTTRPKRPGD-QEGVDYFFIDETR-----FQAMVK---EG 70 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS--SE-EECCCEECSCCCTTC-CBTTTBEECCHHH-----HHHHHH---HT
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC--Ce-EEeceeccCCCchhH-hcCceEEeccHHH-----HHHHHh---cC
Confidence 456789999999999999999999999864 22 222222111110000 0011223333221 111111 01
Q ss_pred CccccccccCcCCccC-CCCccccCCCcEEEEeccccccchHHHhhcC--eEEEEec-CHHHHHHHHHhhCccccCCCHH
Q 019592 124 QAVDIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRELMN--MKIFVDT-DADVRLARRIRRDTVEKGRDIA 199 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d--~~i~l~~-~~~~~~~R~~~R~~~~~~~~~~ 199 (338)
.......+........ ......+.....+++|+...+. ..+...++ ..||+.+ +.+++.+|+..|+....+ ...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~-~i~ 148 (205)
T 3tr0_A 71 AFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGA-RQIRELFPPALSIFILPPSIEALRERLIKRRQDDTA-IIE 148 (205)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSS-THH
T ss_pred cEEeeeeeecccccchHHHHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHH-HHH
Confidence 1111111100000000 0001123456678888754443 33444443 4677766 588999999988744333 344
Q ss_pred HHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
.......... .....+|+||.|+ +.+...+++.+.|.
T Consensus 149 ~rl~~~~~~~---------~~~~~~d~vi~n~-~~~~~~~~l~~~i~ 185 (205)
T 3tr0_A 149 QRLALAREEM---------AHYKEFDYLVVND-NFDQAVQNLIHIIS 185 (205)
T ss_dssp HHHHHHHHHH---------TTGGGCSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------hcccCCCEEEECC-CHHHHHHHHHHHHH
Confidence 4333322211 1147789999877 44444455544443
No 82
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.36 E-value=3e-12 Score=106.84 Aligned_cols=170 Identities=15% Similarity=0.295 Sum_probs=87.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCC-------HHHHHHccccCCCCcccccHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT-------EQELARVHEYNFDHPDAFDTEKLLSSMEK 119 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 119 (338)
++.+|+|+|++||||||+++.|++.++ +.+++.|++.+... ......+.. .......+.....+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~l~~ 74 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNPDSQYGELIEKYIK----EGKIVPVEITISLLKR 74 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCTTSTTHHHHHHHHH----TTCCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhccCChHHHHHHHHHH----CCCcCCHHHHHHHHHH
Confidence 468999999999999999999999876 67888776542110 000000000 0000000111111110
Q ss_pred hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccch--HHHh------hcCeEEEEecCHHHHHHHHHhhCc
Q 019592 120 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RVRE------LMNMKIFVDTDADVRLARRIRRDT 191 (338)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~--~~~~------~~d~~i~l~~~~~~~~~R~~~R~~ 191 (338)
. .... .........+|+||....... .+.+ .+|.+||+++|.+++++|+..|+.
T Consensus 75 ~--------------~~~~----~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 75 E--------------MDQT----MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp H--------------HHHH----HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred H--------------HHhh----hccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 0 0000 011223567889986543221 1222 367899999999999999998863
Q ss_pred c-ccC-CCHHH---HHHHHhhcCcchhhhhccCcCccccE-EecCCCCcHHHHHHHHHHHHHHh
Q 019592 192 V-EKG-RDIAT---VLDQYSKFVKPAFDDFILPTKKYADI-IIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 192 ~-~~~-~~~~~---~~~~~~~~~~p~~~~~i~~~~~~aD~-iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
. .+. ...+. ....|.....|....| .+.+++ +|+++. +++++.+.|.+.+
T Consensus 137 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y----~~~~~~~~id~~~----~~~~v~~~i~~~l 192 (196)
T 1tev_A 137 SSGRSDDNRESLEKRIQTYLQSTKPIIDLY----EEMGKVKKIDASK----SVDEVFDEVVQIF 192 (196)
T ss_dssp TSSCCSCCHHHHHHHHHHHHHHHHHHHHHH----HHTTCEEEEETTS----CHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHhHHHHHHHH----HhcCCEEEEECCC----CHHHHHHHHHHHH
Confidence 2 111 12222 3344444433332222 345676 676552 3445555554443
No 83
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.36 E-value=6.4e-12 Score=105.82 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=33.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+++.+|+|+|++||||||+++.|++.++ +.+++.|+++
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~ 50 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLL 50 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHH
Confidence 45678999999999999999999999875 7888887654
No 84
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.35 E-value=8.1e-14 Score=147.27 Aligned_cols=140 Identities=13% Similarity=0.213 Sum_probs=109.4
Q ss_pred ccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 019592 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~ 76 (338)
+.+.++|++|+|+.. ..|.+.....++++|..++|+|++||||||+++.|.+.+.+. .
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 468899999999864 568899999999999999999999999999999999998761 3
Q ss_pred EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHH---------HHHhccCCcccc----ccccCcCCccCCCCc
Q 019592 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQAVDI----PNYDFKSYKNNVFPA 143 (338)
Q Consensus 77 ~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------l~~l~~~~~~~~----~~~~~~~~~~~~~~~ 143 (338)
+.+++|+.+.-+-+..++..++. |+ .+.+.+.+. +..+..|....+ -.+|.|+++|+..++
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~-----~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGK-----EG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIAR 567 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHH
T ss_pred ccccCCcceeeCCchhHHHhhhc-----cc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHH
Confidence 78899999887778888877553 22 233333333 344444433222 258888889988888
Q ss_pred cccCCCcEEEEeccccccchH
Q 019592 144 RRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~ 164 (338)
+...+++++|+|++++.+|+.
T Consensus 568 Al~~~~~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 568 ALVRNPKILLLDEATSALDAE 588 (1321)
T ss_dssp HHTTCCSEEEEESTTTTSCTT
T ss_pred HHccCCCEEEEecccccCCHH
Confidence 889999999999999998764
No 85
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.34 E-value=6.9e-14 Score=136.50 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=102.2
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++|++|+|++...+.+.....++++|.+++|+|+|||||||+++.|.+.+++. .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 457889999999887778888888899999999999999999999999999998762 25
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHH---------HHhccCCc--c--ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQA--V--DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l---------~~l~~~~~--~--~~~~~~~~~~~~~~~~~~ 144 (338)
.+++||.+..+.+..++..++. +. .+.+...+.+ ..+..|-+ + .-..+|.++.+|+..+++
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa 493 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGR-----ED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTC-----SS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH
T ss_pred EEECCCCcCcCccHHHHHhccC-----CC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH
Confidence 6667776554445555544322 11 1122222222 22211211 1 113688888899888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++++|||++.+|+....
T Consensus 494 l~~~p~illlDEpts~LD~~~~~ 516 (587)
T 3qf4_A 494 LVKKPKVLILDDCTSSVDPITEK 516 (587)
T ss_dssp HHTCCSEEEEESCCTTSCHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHH
Confidence 89999999999999999876543
No 86
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.34 E-value=1.7e-13 Score=134.12 Aligned_cols=143 Identities=12% Similarity=0.093 Sum_probs=103.0
Q ss_pred ccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEE
Q 019592 21 FHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVV 78 (338)
Q Consensus 21 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~~ 78 (338)
+.++||+++|++. ..+.+.....++++|.+++|.|+|||||||+++.|++.++|. .+.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 7889999999754 346777888899999999999999999999999999988751 366
Q ss_pred EEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhcc---------CCccc----cccccCcCCccCCCCccc
Q 019592 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVD----IPNYDFKSYKNNVFPARR 145 (338)
Q Consensus 79 ~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~---------~~~~~----~~~~~~~~~~~~~~~~~~ 145 (338)
++.|+.+..+.+..++..++.... ...+.+.+.+.++.... +-+.. -..+|.|+.+|+..+++.
T Consensus 422 ~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 422 TVSQEPILFSCSIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EECSSCCCCSSBHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred EEccCCcccCCCHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 777776554456666665533211 11333444454444322 11111 136888888888888888
Q ss_pred cCCCcEEEEeccccccchHHH
Q 019592 146 VNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~ 166 (338)
+.+++++++|||++.+|+...
T Consensus 499 ~~~p~illlDEpts~LD~~~~ 519 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENE 519 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHH
T ss_pred HcCCCEEEEECcccCCCHHHH
Confidence 899999999999999987643
No 87
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.33 E-value=4.7e-12 Score=105.11 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=34.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH-hCCCCEEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ-LHDQRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~-l~~~~~~~l~~D~~~ 86 (338)
..+++.+|+|+|++||||||+++.|++. ++ +.+++.|.+.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g---~~~id~d~~~ 46 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDG---FQHLEVGKLV 46 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTT---EEEEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCC---CEEeeHHHHH
Confidence 6677889999999999999999999998 44 8899888654
No 88
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.33 E-value=3.9e-11 Score=103.10 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=30.6
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~ 81 (338)
+|..|.++++.. ....++.+|+|.|++||||||+++.|++.++. +..++.
T Consensus 9 ~~~~~~~~~~~~------------~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 9 SGVDLGTENLYF------------QSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -----------C------------CCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred cCcCccCCCeeE------------eecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566676666611 01347899999999999999999999999986 544443
No 89
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.32 E-value=3.2e-12 Score=106.89 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.++.+|+|+|++||||||+++.|++.++ +.+++.|+++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~ 44 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLL 44 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHH
Confidence 4678999999999999999999999886 6788887654
No 90
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.32 E-value=1.8e-13 Score=133.87 Aligned_cols=142 Identities=12% Similarity=0.171 Sum_probs=100.1
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~~ 77 (338)
+.+.++|++++|+++ .+.+.....++++|.+++|+|||||||||+++.|++.++|. .+
T Consensus 353 ~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 457789999999643 45677777889999999999999999999999999998762 36
Q ss_pred EEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHH---------HHhccCCcc----ccccccCcCCccCCCCcc
Q 019592 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQAV----DIPNYDFKSYKNNVFPAR 144 (338)
Q Consensus 78 ~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l---------~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 144 (338)
.++.||.+..+.+..++..++.... +.+.+.+.+ ..+..+-.. .-..+|.|+.+|+..+++
T Consensus 432 ~~v~Q~~~lf~~tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 432 GIVLQDTILFSTTVKENLKYGNPGA------TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp EEECTTCCCCSSBHHHHHHSSSTTC------CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred EEEeCCCccccccHHHHHhcCCCCC------CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 6777776665556666665432211 111222222 222111110 112588889999888888
Q ss_pred ccCCCcEEEEeccccccchHHHh
Q 019592 145 RVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 145 ~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+++++++|||++.+|+....
T Consensus 506 l~~~p~illlDEpts~LD~~~~~ 528 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKTEK 528 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHH
Confidence 89999999999999999876543
No 91
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.31 E-value=3.2e-13 Score=119.97 Aligned_cols=125 Identities=15% Similarity=0.201 Sum_probs=81.6
Q ss_pred chhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCHHHHHHccccCCCCccccc
Q 019592 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFD 109 (338)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 109 (338)
+.....++++|.+++|.|+||||||||++.|++.+.+. .+.++.++..+...+..++.. +. .+ .. ..
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~-~~-~~--~~-~~ 128 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GV-SY--DE-YR 128 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHH-TT-CC--CH-HH
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhh-Cc-cc--ch-HH
Confidence 33333499999999999999999999999999988752 367788875543346666554 21 11 11 01
Q ss_pred HHHHH------HHHHHhccCCc--c--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 110 TEKLL------SSMEKLRHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 110 ~~~l~------~~l~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
..... +.+..+..+.. + ....+|.++.+|+..+++.+.+++++++|||++++|+....
T Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 129 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 11111 11111111000 0 12368889999988888888999999999999999886543
No 92
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.30 E-value=1e-12 Score=112.10 Aligned_cols=184 Identities=16% Similarity=0.256 Sum_probs=94.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCC-----------HHHHHH-----c------cccCCCCc
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT-----------EQELAR-----V------HEYNFDHP 105 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~-----------~~~~~~-----~------~~~~~~~~ 105 (338)
+.+|+|+|++||||||+++.|++.++ +.+++.|.+++... ..+... + +...+...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g---~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS---MIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC---CceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCC
Confidence 56899999999999999999999876 78899887763211 000000 0 00000000
Q ss_pred ----ccccHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHH
Q 019592 106 ----DAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADV 181 (338)
Q Consensus 106 ----~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~ 181 (338)
..+....+.+.+..+.. .|......... ...+.....++++|+... ..+.+.+|.+|||++|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-----~p~v~~~~~~~----~~~~~~~~~~vi~g~~~~--~~~~~~~~~vi~l~a~~e~ 148 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVAS-----KEPVRSFAVKK----QKELAAEKGIVMDGRDIG--TVVLPDADLKVYMIASVEE 148 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHT-----SHHHHHHHHHH----HHHHHTTCCEEEEESSCC--CCCCTTCSEEEEEECCHHH
T ss_pred ccchhhcCcHHHHHHHHHhcc-----CHHHHHHHHHH----HHHhccCCcEEEEcCCcc--ceecCCCCEEEEEECCHHH
Confidence 00111111111111100 01000000000 001112345788887542 2344567899999999999
Q ss_pred HHHHHHhhCccccCC--CHHHHHHHHhhcCcchhhhhccCcCcccc-EEecCCCCcHHHHHHHHHHHHHHh
Q 019592 182 RLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKL 249 (338)
Q Consensus 182 ~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~~~~~~~~~~i~~~l 249 (338)
+.+|+++|. ..++. +.+.....+..+..+.....+.|....+| ++|++++. +++++++.|.+.+
T Consensus 149 ~~~R~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~---~~ee~~~~I~~~l 215 (219)
T 2h92_A 149 RAERRYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGK---SIEEVTDEILAMV 215 (219)
T ss_dssp HHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCC---CHHHHHHHHHHHH
Confidence 999987531 11222 45555555544332333334445555677 99987742 2444455554443
No 93
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.28 E-value=1.3e-11 Score=102.88 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=29.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
+|+|+|++||||||+++.|++.++..++.+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999999999999988434566676664
No 94
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.28 E-value=5.8e-12 Score=105.99 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=33.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
....+.+|+|+|++||||||+++.|++.++ +.+++.|++.
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~ 55 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELF 55 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHH
Confidence 455678999999999999999999999886 5677776544
No 95
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.26 E-value=1.2e-12 Score=108.58 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+..|+|+|++||||||+++.|++.++ +.+++.|.+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~d~~~ 40 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDSDKEI 40 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHH
Confidence 356899999999999999999999886 6788887654
No 96
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.25 E-value=5.3e-12 Score=106.51 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
++++|.+|+|+|++||||||+++.|++.+.+ ...+.-.+... ....... .-..+.|.++. .+... ...+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~~~i~~~~~-~~~~~~~-~~~~~~~~~~~-----~~~~~---~~~~ 70 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST-SYKYSISMTTR-QMREGEV-DGVDYFFKTRD-----AFEAL---IKDD 70 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC-CEECCCCEECS-CCCTTCC-BTTTBEECCHH-----HHHHH---HHTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC-CeEEecccccC-CCCCCcc-CCCceEEcCHH-----HHHHH---HHcC
Confidence 4567899999999999999999999998743 22211011111 1000000 00122232221 11111 1222
Q ss_pred CccccccccCcCCccC-CCCccccCCCcEEEEeccccccchHHHhhc-C-eEEEEe-cCHHHHHHHHHhhCc
Q 019592 124 QAVDIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRELM-N-MKIFVD-TDADVRLARRIRRDT 191 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlIldg~~~~~d~~~~~~~-d-~~i~l~-~~~~~~~~R~~~R~~ 191 (338)
..+..+.+........ ......+..+..+|+|+++.+. ..+...+ | ..+|+. ++.+++.+|+..|+.
T Consensus 71 ~~~~~~~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~ 141 (207)
T 2j41_A 71 QFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGA-KQVRKKFPDALFIFLAPPSLEHLRERLVGRGT 141 (207)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGH-HHHHHHCTTSEEEEEECCC-------------
T ss_pred CeEEEEeECCeecCCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCeEEEEEECCCHHHHHHHHHhcCC
Confidence 2232232221100000 0001123346789999988763 5556656 6 445554 457789999888863
No 97
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.25 E-value=2.9e-12 Score=104.51 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=82.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHH-HHHHHHhccCCcccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL-LSSMEKLRHGQAVDI 128 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~l~~~~~~~~ 128 (338)
.|+|+|++||||||+++.|++.++ +.+++.|.+.+.........+.. .++ ...+ ..+ .+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~g~~~~~~~~-~~~-~~~~--~~~~~~~l~~--------- 65 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEVQKREGLSIPQIFE-KKG-EAYF--RKLEFEVLKD--------- 65 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHHTSCHHHHHH-HSC-HHHH--HHHHHHHHHH---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHHHHHcCCCHHHHHH-HhC-hHHH--HHHHHHHHHH---------
Confidence 699999999999999999999886 67777776542110000000000 000 0000 000 011111
Q ss_pred ccccCcCCccCCCCccccCCCcEEEEeccccccchHH---HhhcCeEEEEecCHHHHHHHHHhhCccccC-CCHHHHHHH
Q 019592 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV---RELMNMKIFVDTDADVRLARRIRRDTVEKG-RDIATVLDQ 204 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~---~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~-~~~~~~~~~ 204 (338)
......++|.+|....+.+.. .+.+|.+|||++|.+++++|+..|...... .....+...
T Consensus 66 ----------------l~~~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~ 129 (168)
T 2pt5_A 66 ----------------LSEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNL 129 (168)
T ss_dssp ----------------HTTSSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHH
T ss_pred ----------------HhccCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHH
Confidence 111345666654322222222 223789999999999999999876411110 112223333
Q ss_pred HhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhcccc
Q 019592 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHD 253 (338)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~~~ 253 (338)
|.... +. +.. +|++| ++.. +++++.+.|.+.+....
T Consensus 130 ~~~~~-~~-------~~~-~~~~i-~~~~---~~~~~~~~i~~~l~~~~ 165 (168)
T 2pt5_A 130 FEERR-KI-------YSK-ADIKV-KGEK---PPEEVVKEILLSLEGNA 165 (168)
T ss_dssp HHHHH-HH-------HTT-SSEEE-ECSS---CHHHHHHHHHHHHHTSC
T ss_pred HHHHH-HH-------HHh-CCEEE-CCCC---CHHHHHHHHHHHHHhcc
Confidence 33211 11 134 89999 6532 45566666666655444
No 98
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.25 E-value=8.2e-13 Score=118.96 Aligned_cols=145 Identities=18% Similarity=0.246 Sum_probs=84.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC--CCCCCHH-------HHHHccccCCCCcccccHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF--YHNLTEQ-------ELARVHEYNFDHPDAFDTEKLLSSME 118 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~--~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l~~~l~ 118 (338)
+.+|+|+||+||||||+++.|++.++ ..+++.|++ |+.+... +.........+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~d--------------- 68 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID--------------- 68 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSS---------------
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC---CceeccccccccccccccccCCCHHHHHHHHHHHHH---------------
Confidence 47999999999999999999999986 899999998 7665431 11111000000
Q ss_pred HhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEe-cCHH--HHHHHHHhhCccccC
Q 019592 119 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD-TDAD--VRLARRIRRDTVEKG 195 (338)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~-~~~~--~~~~R~~~R~~~~~~ 195 (338)
+..+.. .++.+++....+.........+..+++++|.. ++...+...+| +|++ ++.+ ++++|++.| ...+|
T Consensus 69 -i~~~~~-~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~-ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G 142 (340)
T 3d3q_A 69 -ILPPDA-SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTG-LYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLN 142 (340)
T ss_dssp -CBCTTS-CCCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSC
T ss_pred -HhCCcc-ccCHHHHHHHHHHHHHHHHhCCCcEEEECChh-hhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcC
Confidence 000000 11112211111100001112344566666666 44566666665 7788 8888 677788887 66666
Q ss_pred CCHHHHHHHHhhcCcchhhhhccC
Q 019592 196 RDIATVLDQYSKFVKPAFDDFILP 219 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~ 219 (338)
. ....++.....|.+..++.|
T Consensus 143 ~---~~l~~~L~~vdP~~a~~I~p 163 (340)
T 3d3q_A 143 N---NKLHEYLASFDKESAKDIHP 163 (340)
T ss_dssp H---HHHHHHHHHHCHHHHHHSCT
T ss_pred H---HHHHHHHHhhCcHHHhhcCc
Confidence 3 35677777778888887765
No 99
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.24 E-value=1e-12 Score=109.04 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=85.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHH-HHHHHHhccCCccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL-LSSMEKLRHGQAVD 127 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~l~~~~~~~ 127 (338)
.+|+|+|++||||||+++.|++.++ +.+++.|.+++.......... |...+...+... .+.+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~D~~~~~~~g~~~~~~----~~~~g~~~~~~~~~~~~~~~------- 68 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQRTGRSIADI----FATDGEQEFRRIEEDVVRAA------- 68 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHSSCHHHH----HHHHCHHHHHHHHHHHHHHH-------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC---CCEEeCchHHHHHcCCCHHHH----HHHhChHHHHHHHHHHHHHH-------
Confidence 4699999999999999999999886 778888876421100000000 000000000000 0111111
Q ss_pred cccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhh--cCeEEEEecCHHHHHHHHHhhCccc--cCCCHHHHH-
Q 019592 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIRRDTVE--KGRDIATVL- 202 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~--~d~~i~l~~~~~~~~~R~~~R~~~~--~~~~~~~~~- 202 (338)
......++.+|....+++..+.. ++.+|||++|.+++.+|+..|+... .........
T Consensus 69 ------------------~~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~ 130 (184)
T 2iyv_A 69 ------------------LADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYR 130 (184)
T ss_dssp ------------------HHHCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHH
T ss_pred ------------------HhcCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHH
Confidence 01122344445433334433332 6799999999999999998875321 112223323
Q ss_pred HHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
.++... .|.| ...+|++|+++.. +++++.+.|.+.+.
T Consensus 131 ~~~~~r-~~~~-------~~~~~~~Idt~~~---s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 131 ALMAKR-APLY-------RRVATMRVDTNRR---NPGAVVRHILSRLQ 167 (184)
T ss_dssp HHHHHH-HHHH-------HHHCSEEEECSSS---CHHHHHHHHHTTSC
T ss_pred HHHHHH-HHHH-------hccCCEEEECCCC---CHHHHHHHHHHHHh
Confidence 333221 1222 3568999987632 35667777766654
No 100
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.23 E-value=9.6e-12 Score=103.69 Aligned_cols=171 Identities=18% Similarity=0.240 Sum_probs=87.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHH-HHHHhccCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS-SMEKLRHGQ 124 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~l~~~~ 124 (338)
+++.+|.|+|++||||||+++.|++.++ +.+++.|.+... .. ....+.. ..+. ..+.. ....+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~~D~~~~~-----~~--~~~~~~~-~~~~-~~~~~~~~~~~~~-- 68 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR---LPLLSKDAFKEV-----MF--DGLGWSD-REWS-RRVGATAIMMLYH-- 68 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT---CCEEEHHHHHHH-----HH--HHHCCCS-HHHH-HHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC---CeEecHHHHHHH-----HH--HhcCccc-hHHH-HHhhHHHHHHHHH--
Confidence 4678999999999999999999999885 567776654211 11 1111111 1110 00100 0010000
Q ss_pred ccccccccCcCCccCCCCccccCCCcEEEEeccccccc--hH---HHhh---cCeEEEEecCHHHHHHHHHhhCcc-cc-
Q 019592 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SR---VREL---MNMKIFVDTDADVRLARRIRRDTV-EK- 194 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d--~~---~~~~---~d~~i~l~~~~~~~~~R~~~R~~~-~~- 194 (338)
.....+..+..+|+|+.+.... .. +... .+.+||+++|.+++++|+..|... .+
T Consensus 69 ----------------~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~ 132 (193)
T 2rhm_A 69 ----------------TAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARH 132 (193)
T ss_dssp ----------------HHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC-
T ss_pred ----------------HHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccC
Confidence 0001112344678888762210 01 1211 247899999999999999887521 11
Q ss_pred -CCCHHHHHH--HHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 195 -GRDIATVLD--QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 195 -~~~~~~~~~--~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
+........ ++... +..+...+...++++|+++.......+++++.|.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~ 187 (193)
T 2rhm_A 133 PGHCDDRSPADLELVRS----RGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQ 187 (193)
T ss_dssp -------CHHHHHHHHH----SCCCCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHH
T ss_pred cccccCccCcchhhHHH----HhcCCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHH
Confidence 110011111 11111 12211122236889998775555567778888776653
No 101
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.22 E-value=1.5e-12 Score=112.22 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=22.3
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHH-HHhC
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMII-QQLH 73 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~-~~l~ 73 (338)
+.-+.+++|| ++++|.+++|+|||||||||++++|+ +.++
T Consensus 13 ~~~~~~~~sl---------------~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 13 EAQTQGPGSM---------------LKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ---------C---------------CEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hhcccCCCCc---------------ccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4445678888 88999999999999999999999999 8765
No 102
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.21 E-value=7.6e-12 Score=102.12 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+|+|+|++||||||+++.|++.++ +.+++.|.+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~ 42 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMII 42 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHH
Confidence 467899999999999999999999886 7788887654
No 103
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.20 E-value=4.7e-12 Score=123.43 Aligned_cols=138 Identities=17% Similarity=0.066 Sum_probs=93.0
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------CCEEEEeCCCCC-CCCCHH
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDSFY-HNLTEQ 92 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--------~~~~~l~~D~~~-~~l~~~ 92 (338)
.+++++++|.+ .+......++.+|.+++|.|+||||||||++.|++.+.+ ..+.++.++... ..++..
T Consensus 359 ~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~ 435 (607)
T 3bk7_A 359 EYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVY 435 (607)
T ss_dssp EECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHH
T ss_pred EEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHH
Confidence 35666665532 122222235678999999999999999999999998875 246788887432 445554
Q ss_pred HHHHcc-ccCCCCcccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 93 ELARVH-EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 93 ~~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..... ...+ .+.....+.+..+...... ....+|.++.+++..+.+.+.+++++|+|||++++|+..+.
T Consensus 436 e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~ 508 (607)
T 3bk7_A 436 ELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508 (607)
T ss_dssp HHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHH
T ss_pred HHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHH
Confidence 443221 0001 1223445666666654332 34578999999988888888999999999999999876443
No 104
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.19 E-value=3.9e-12 Score=122.37 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=81.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CEEEEeCCCCC-CCCCHHHHHHccccCCCCcccccHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSFY-HNLTEQELARVHEYNFDHPDAFDTEKL 113 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------~~~~l~~D~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l 113 (338)
++.+|.++||+|+||||||||+++|++.+.+. .+.+++++.+. ...+..++.......+... .....
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~ 366 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALST---SSWFF 366 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCT---TSHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccch---hHHHH
Confidence 67899999999999999999999999988762 35666666432 2345555433321111111 11223
Q ss_pred HHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 114 LSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 114 ~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.++.+..... .....+|.++.+|+..+++.+.+++++|+|||+.++|+..+
T Consensus 367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 421 (538)
T 3ozx_A 367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421 (538)
T ss_dssp HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 344444333222 24457899999998888888999999999999999987644
No 105
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.19 E-value=4.5e-11 Score=99.91 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=26.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D 83 (338)
+|+|+|++||||||+++.|++.+...++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7999999999999999999998843345555443
No 106
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.19 E-value=4.2e-11 Score=101.00 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=90.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 124 (338)
+.++.+|+|+|+|||||||+++.|++.++. .+.. +.....+.....+.. -..+.|. +.+.+...+ ..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~-~~~~-~~~~ttR~~~~~e~~-g~~~~~~-----~~~~~~~~~---~~~~ 77 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPS-RFRF-SISCTTRNKREKETN-GVDYYFV-----DKDDFERKL---KEGQ 77 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTT-TEEE-CCEEECSCCCTTCCB-TTTEEEC-----CHHHHHHHH---HTTC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCcc-ceee-eeeecCCCCCCCCCC-CcceeeC-----CHHHHHHHH---HcCC
Confidence 457889999999999999999999998742 1221 110000000000000 0011121 222232222 2222
Q ss_pred ccccccccCcCCccCC-CCccccCCCcEEEEeccccccchHHHhhc---C-eEEEEe-cCHHHHHHHHHhhCccccCCCH
Q 019592 125 AVDIPNYDFKSYKNNV-FPARRVNPSDVILLEGILVFHDSRVRELM---N-MKIFVD-TDADVRLARRIRRDTVEKGRDI 198 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~-~~~~~~~~~~vlIldg~~~~~d~~~~~~~---d-~~i~l~-~~~~~~~~R~~~R~~~~~~~~~ 198 (338)
.+....+......... .....+..+..+|+|....+. ..+++.+ + .+|||+ ++.+++.+|+..|... +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~----~~ 152 (204)
T 2qor_A 78 FLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGV-KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTE----KP 152 (204)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTS----CH
T ss_pred CEEeHHhCCCeecCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCC----CH
Confidence 2222222111111000 001123467788998755443 3344443 3 789998 8999999999877521 22
Q ss_pred HHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHH
Q 019592 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
+.+...+.....+.... +...+|++|.|+ +.+..++++.+.|...
T Consensus 153 ~~i~~rl~~~~~~~~~~----~~~~~d~vi~n~-~~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 153 EEINKRMQELTREMDEA----DKVGFNYFIVND-DLARTYAELREYLLGS 197 (204)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHTCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----hhccCcEEEECc-CHHHHHHHHHHHHHHH
Confidence 33332222211111000 246789998877 5445566666666544
No 107
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.19 E-value=5.1e-12 Score=133.30 Aligned_cols=144 Identities=11% Similarity=0.158 Sum_probs=102.0
Q ss_pred ccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------------------CC
Q 019592 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QR 76 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---------------------~~ 76 (338)
+.+.++||+|+|+.. ..+.+.....++++|.++||+|+|||||||+++.|.+.+++ .+
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 457789999999854 34678888889999999999999999999999999998875 24
Q ss_pred EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhcc---------CCc--c--ccccccCcCCccCCCCc
Q 019592 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQA--V--DIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 77 ~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~---------~~~--~--~~~~~~~~~~~~~~~~~ 143 (338)
+.+++||.+....+..++..++... .....+.+.+.++.... +-+ + .-..+|.|..+|+..++
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iAR 1184 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCCSS----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHH
T ss_pred eEEECCCCccccccHHHHHhccCCC----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHH
Confidence 6788888766556666665543211 11222333333332211 111 0 01257888888888888
Q ss_pred cccCCCcEEEEeccccccchHHH
Q 019592 144 RRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
+.+.+++++|+|||++++|+...
T Consensus 1185 al~~~p~iLiLDEpTs~lD~~~~ 1207 (1284)
T 3g5u_A 1185 ALVRQPHILLLDEATSALDTESE 1207 (1284)
T ss_dssp HHHHCCSSEEEESCSSSCCHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHH
Confidence 88899999999999999987643
No 108
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.19 E-value=5.3e-11 Score=97.22 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+|+|+|++||||||+++.|++.++ +.+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK---YPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC---CCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CeeecCcccc
Confidence 4899999999999999999999886 6788888654
No 109
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.18 E-value=4e-11 Score=99.34 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=31.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+|.+|+|+|++||||||+++.|++.++ +.+++.|++.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~ 39 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDIL 39 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHH
Confidence 4578999999999999999999999875 6788776544
No 110
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.18 E-value=1e-10 Score=99.17 Aligned_cols=175 Identities=19% Similarity=0.268 Sum_probs=94.5
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC----CCHHH--HHHccccCCCCcccccHHHHHHH
Q 019592 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN----LTEQE--LARVHEYNFDHPDAFDTEKLLSS 116 (338)
Q Consensus 43 ~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~----l~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 116 (338)
...+++.+|.|.||+||||||.|+.|++.++ +..++..+.++. -+... ...+....--.|+..-...+.+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~ 100 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEA 100 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999999986 788887665421 01000 00000000001111111111111
Q ss_pred HHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccc-cccch-HH---HhhcCeEEEEecCHHHHHHHHHhhCc
Q 019592 117 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGIL-VFHDS-RV---RELMNMKIFVDTDADVRLARRIRRDT 191 (338)
Q Consensus 117 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~-~~~d~-~~---~~~~d~~i~l~~~~~~~~~R~~~R~~ 191 (338)
+.. .......+|+||.= ...+. .+ ....+.+|+++++.++..+|+..|..
T Consensus 101 l~~-------------------------~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~ 155 (217)
T 3umf_A 101 MIK-------------------------LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE 155 (217)
T ss_dssp HHH-------------------------HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred Hhh-------------------------ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence 111 11233468899832 21111 11 12357899999999999999988853
Q ss_pred cc-cC----CCHHHHHHHHhhcCcchhhhhccCcCccccE-EecCCCCcHHHHHHHHHHHHHHhcccc
Q 019592 192 VE-KG----RDIATVLDQYSKFVKPAFDDFILPTKKYADI-IIPRGGDNHVAIDLIVQHIRTKLGQHD 253 (338)
Q Consensus 192 ~~-~~----~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~-iI~~~~~~~~~~~~~~~~i~~~l~~~~ 253 (338)
.. +. .++...+..|.+...|-.+.| .+.-.+ .|+.+ .+++++.+.|.+.|.+.+
T Consensus 156 ~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y----~~~~~l~~Idg~----~~~eeV~~~I~~~l~k~G 215 (217)
T 3umf_A 156 TSNRVDDNEETIVKRFRTFNELTKPVIEHY----KQQNKVITIDAS----GTVDAIFDKVNHELQKFG 215 (217)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTHHHHHHH----HTTTCEEEEETT----SCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HhcCCEEEEECC----CCHHHHHHHHHHHHHHcC
Confidence 21 11 123334456666666655544 222233 34322 356777777777765544
No 111
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.18 E-value=4.3e-12 Score=133.84 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=103.6
Q ss_pred ccccccCccccccCC-CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 019592 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~---------------------~ 76 (338)
+.+.++||+|+|+.. ..+.+.....++++|.+++|+|+||||||||++.|.+.+++. .
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 467899999999865 457888888999999999999999999999999999988762 2
Q ss_pred EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHH---------HHHhccCCcc----ccccccCcCCccCCCCc
Q 019592 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQAV----DIPNYDFKSYKNNVFPA 143 (338)
Q Consensus 77 ~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------l~~l~~~~~~----~~~~~~~~~~~~~~~~~ 143 (338)
+.+++||.+....+..++..++... ...+.+.+. +..+..+.+. .-..+|.++.+|+..++
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiAR 539 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGRED------VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIAR 539 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSS------CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHH
T ss_pred eEEEcCCCccCCccHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHH
Confidence 6788888776566777776654321 122222222 2223222111 11257888888888888
Q ss_pred cccCCCcEEEEeccccccchH
Q 019592 144 RRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 144 ~~~~~~~vlIldg~~~~~d~~ 164 (338)
+.+.+++++|+|+|++.+|+.
T Consensus 540 al~~~p~iliLDEpts~LD~~ 560 (1284)
T 3g5u_A 540 ALVRNPKILLLDEATSALDTE 560 (1284)
T ss_dssp HHHHCCSEEEEESTTCSSCHH
T ss_pred HHhcCCCEEEEECCCCCCCHH
Confidence 888999999999999999975
No 112
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.18 E-value=8.9e-12 Score=102.10 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=30.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
.+.+|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~d~~ 38 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQE 38 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEeccHH
Confidence 356899999999999999999999886 577777654
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.17 E-value=9.5e-11 Score=96.35 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+.+|.|+|++||||||+++.|++.++ ..+..++.|.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~-~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP-EPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS-SCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-CCeEEeccchHh
Confidence 56899999999999999999999986 235556676543
No 114
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.16 E-value=1.7e-11 Score=101.90 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.+++|+|||||||||++++|++.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999999876
No 115
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.16 E-value=6.4e-11 Score=102.73 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=33.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..++.+|+|+|++||||||+++.|++.++ +.+++.|+..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~ 64 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLL 64 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHH
Confidence 45789999999999999999999999875 7888877654
No 116
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.15 E-value=7.5e-12 Score=120.64 Aligned_cols=118 Identities=18% Similarity=0.087 Sum_probs=81.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------CCEEEEeCCCCC-CCCCHHHHHHcc-ccCCCCcccccHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDSFY-HNLTEQELARVH-EYNFDHPDAFDTEKL 113 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--------~~~~~l~~D~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~l 113 (338)
++.+|.++||+|+||||||||++.|++.+.+ ..+.++.++... ..++..+..... ...+ .+.+..
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-----~~~~~~ 382 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKL-----NSNFYK 382 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-----TCHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCC-----CHHHHH
Confidence 5678999999999999999999999998875 246788887533 344554432211 0001 112334
Q ss_pred HHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 114 LSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 114 ~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
.+.+..+...... ....+|.++.+++..+.+.+.+++++|+|||+.++|+...
T Consensus 383 ~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 383 TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 4455544443222 3347888899998888888899999999999999987643
No 117
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.15 E-value=5.1e-11 Score=101.29 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.|+|+|++||||||+++.|++.++ +.+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~ 35 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMF 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHH
Confidence 589999999999999999998875 6777777654
No 118
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.13 E-value=1.6e-11 Score=100.86 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=82.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC---CHHHHHHccccCCCCcccccHHHH-HHHHHHhccCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL---TEQELARVHEYNFDHPDAFDTEKL-LSSMEKLRHGQ 124 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~l~~~~ 124 (338)
.+|+|+|++||||||+++.|++.++ +.+++.|.++... ...+. |...+...+... .+.+..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~~~~~g~~~~~~-------~~~~g~~~~~~~~~~~~~~l---- 70 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLIEQKFNQKVSEI-------FEQKRENFFREQEQKMADFF---- 70 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHHTSCHHHH-------HHHHCHHHHHHHHHHHHHHH----
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHHHHHcCCCHHHH-------HHHcCHHHHHHHHHHHHHHH----
Confidence 3699999999999999999999886 7888888654210 00000 000000000000 1111111
Q ss_pred ccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhcCeEEEEecCHHHHHHHHHhhC--ccccCCCHHHHH
Q 019592 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD--TVEKGRDIATVL 202 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~d~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~ 202 (338)
......+|..|.....+.. ....+.+||+++|.+++.+|+..|. ........+.+.
T Consensus 71 ---------------------~~~~~~vi~~g~~~~~~~~-l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~ 128 (175)
T 1via_A 71 ---------------------SSCEKACIATGGGFVNVSN-LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAK 128 (175)
T ss_dssp ---------------------TTCCSEEEECCTTGGGSTT-GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHH
T ss_pred ---------------------HccCCEEEECCCCEehhhH-HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHH
Confidence 1122233332322111211 2345789999999999999987762 111111134444
Q ss_pred HHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhc
Q 019592 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
..|.... |.| ...+|++|+++.. +++++++.|.+.+.
T Consensus 129 ~~~~~r~-~~y-------~~~~~~~Idt~~~---~~eev~~~I~~~l~ 165 (175)
T 1via_A 129 KLYNERL-SKY-------EQKANFILNIENK---NIDELLSEIKKVIK 165 (175)
T ss_dssp HHHHHHH-HHH-------HHHCSEEEECTTC---CHHHHHHHHHHHHC
T ss_pred HHHHHHH-HHH-------HhcCCEEEECCCC---CHHHHHHHHHHHHH
Confidence 4444322 222 2457999976633 35666666666654
No 119
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.13 E-value=3.3e-11 Score=98.64 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+|+|+|++||||||+++.|++.++ +.+++.|.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHH
Confidence 5799999999999999999999886 7788887654
No 120
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.11 E-value=6.9e-11 Score=100.49 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.|+|+|++||||||+++.|++.++ +.+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~ 35 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMF 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHH
Confidence 589999999999999999998875 7788887654
No 121
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.11 E-value=3.5e-11 Score=101.88 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
..++.+|+|+|++||||||+++.|++.++.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999998763
No 122
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.10 E-value=3.1e-10 Score=95.36 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=35.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEE--EEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVV--LVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~--~l~~D~~~ 86 (338)
+.+++.+|+|+|+|||||||+++.|++.++..+.. +++.|++.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 67889999999999999999999999988633443 77776654
No 123
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.10 E-value=2.8e-09 Score=89.92 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=26.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~ 76 (338)
++.+|+|.|++||||||+++.|++.++..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999987543
No 124
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.10 E-value=7.6e-10 Score=96.91 Aligned_cols=162 Identities=15% Similarity=0.228 Sum_probs=85.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE--eCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV--NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l--~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 123 (338)
.++.+|.|+|++||||||+++.|++.+...++.++ +.|.+...+. . |... ....+........
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~--------~--~~~~---~e~~~~~~~~~~i-- 66 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP--------V--WKEK---YEEFIKKSTYRLI-- 66 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS--------S--CCGG---GHHHHHHHHHHHH--
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh--------h--hhHH---HHHHHHHHHHHHH--
Confidence 35789999999999999999999998543334443 6664332211 1 2110 0011111110000
Q ss_pred CccccccccCcCCccCCCCccccCCCcEEEEeccccccc--hHHHhh------cCeEEEEecCHHHHHHHHHhhCccccC
Q 019592 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVREL------MNMKIFVDTDADVRLARRIRRDTVEKG 195 (338)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d--~~~~~~------~d~~i~l~~~~~~~~~R~~~R~~~~~~ 195 (338)
...+.. ..+|+|+...... ..+... .+.+||+++|.+++++|..+|.. .
T Consensus 67 -------------------~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~---~ 123 (260)
T 3a4m_A 67 -------------------DSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE---K 123 (260)
T ss_dssp -------------------HHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC---S
T ss_pred -------------------HHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC---C
Confidence 011123 6788888543211 112221 26899999999999999988852 1
Q ss_pred CCHHHHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHHHhcc
Q 019592 196 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~~l~~ 251 (338)
...+.+...+.....|.. .| .+..++++|+.+.. .+.+++.+.|...+..
T Consensus 124 ~~~~~l~~~~~~~e~~~~-~~---~~~~~~~~Id~~~~--~~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 124 IPNEVIKKMYEKFDEPGK-KY---KWDEPFLIIDTTKD--IDFNEIAKKLIEKSKE 173 (260)
T ss_dssp SCHHHHHHHHHHCCCTTS-SC---GGGCCSEEEETTSC--CCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcCccc-cC---CCCCCEEEEeCCCC--CCHHHHHHHHHhcccC
Confidence 222222222222222110 00 01457899976642 2366777777766544
No 125
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.09 E-value=4e-10 Score=92.87 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=31.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.++.+|+|+|++||||||+++.|++.++ +.+++.|+++
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~d~~~ 46 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG---LKYINVGDLA 46 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEHHHHH
Confidence 4567899999999999999999999886 6777776543
No 126
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.09 E-value=4.1e-12 Score=109.34 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=25.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
..++|.+|+|.|++||||||+++.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 5578999999999999999999999987
No 127
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=3.9e-11 Score=101.53 Aligned_cols=179 Identities=17% Similarity=0.154 Sum_probs=80.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 124 (338)
.++|.+|+|+|||||||||+++.|++.+++.-...++. .-+.....+. .-..+.| .+...+.+.+ ..+.
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~--~tr~~~~~e~-~g~~y~~-----~~~~~f~~~~---~~~~ 73 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM--TTRLPREGEQ-DGVDYYF-----RSREVFEQAI---KDGK 73 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE--ESSCCCTTCC-BTTTBEE-----CCHHHHHHHH---HTTC
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec--ccccCcCccc-CCceeEE-----ecHHHHHHHH---hcCc
Confidence 46789999999999999999999999876311111110 0000000000 0001111 1222333322 1222
Q ss_pred ccccccccCcCCccC-CCCccccCCCcEEEEeccccccchHHHhhc-C-eEEEEecC-HHHHHHHHHhhCccccCCCHHH
Q 019592 125 AVDIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRELM-N-MKIFVDTD-ADVRLARRIRRDTVEKGRDIAT 200 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~~~~~~vlIldg~~~~~d~~~~~~~-d-~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~ 200 (338)
......+........ ......+..+..+|+|....+. ..+...+ + ..||+.++ .+++.+|+.+|+.. ....+..
T Consensus 74 ~le~~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~-~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~-~~e~i~~ 151 (208)
T 3tau_A 74 MLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGA-MQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTE-SMEVVEE 151 (208)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHH-HHHHHHCTTSEEEEEECTTTTTSSCC--------CCHHHHH
T ss_pred EEEEEEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHH-HHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCC-CHHHHHH
Confidence 222111111110000 0011223456678888765553 3333333 3 57888766 78888888877532 1222222
Q ss_pred HHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
.+....... +....+|++|.|+ +.+.+++++.+.|.
T Consensus 152 Rl~~~~~e~---------~~~~~~d~vivN~-~~~~~~~~l~~~i~ 187 (208)
T 3tau_A 152 RMETAKKEI---------EMMASYDYAVVND-VVANAVQKIKGIVE 187 (208)
T ss_dssp HHHHHHHHH---------HHGGGSSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------HhhccCCEEEECc-CHHHHHHHHHHHHH
Confidence 222221111 1146789999887 44444555554443
No 128
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.08 E-value=2.5e-10 Score=95.94 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~ 81 (338)
..+|+|.|++||||||+++.|++.|+ +.+++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg---~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN---IPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT---CCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC---cCEEC
Confidence 45999999999999999999999987 67776
No 129
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.08 E-value=5e-10 Score=94.80 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=27.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~ 77 (338)
.+++.+|+|+|++||||||+++.|++.++..++
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 356889999999999999999999998764333
No 130
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.2e-10 Score=113.35 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=80.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCC-CCCCHHHHHHccccCCCCcccccHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFY-HNLTEQELARVHEYNFDHPDAFDTEKLLSS 116 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--------~~~~l~~D~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (338)
..+.++||+|+||||||||++.|++.+.+. ++.++.++... ...+..++..... .. ...+.....+.
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~--~~--~~~~~~~~~~~ 451 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKI--RG--QFLNPQFQTDV 451 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHC--SS--TTTSHHHHHHT
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHh--hc--ccccHHHHHHH
Confidence 344789999999999999999999998763 36777776322 2334444322111 10 11223344556
Q ss_pred HHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHh
Q 019592 117 MEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 117 l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~ 167 (338)
+..+...... ....+|.++.+|+..+.+.+.+++++++|||++++|+....
T Consensus 452 l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 504 (608)
T 3j16_B 452 VKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI 504 (608)
T ss_dssp HHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred HHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence 6666554432 34478999999988888889999999999999999876443
No 131
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.06 E-value=2.6e-10 Score=97.40 Aligned_cols=37 Identities=24% Similarity=0.562 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+|.|.|++||||||+++.|++.++ ..+++.|+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHH
Confidence 467899999999999999999999886 5777766554
No 132
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.06 E-value=2e-10 Score=95.55 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~ 84 (338)
.+|+|+|++||||||+++.|++.++..+ +.+++.|+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 5899999999999999999999887433 55665443
No 133
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.04 E-value=5.3e-10 Score=95.34 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
+...+.+|+|.|++||||||+++.|++.++ +.+++.|.
T Consensus 10 m~~~~~iI~i~g~~gsGk~~i~~~la~~lg---~~~~d~~~ 47 (223)
T 3hdt_A 10 MGNKNLIITIEREYGSGGRIVGKKLAEELG---IHFYDDDI 47 (223)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHHHT---CEEECHHH
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHcC---CcEEcHHH
Confidence 334568999999999999999999999986 77777653
No 134
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.04 E-value=6.7e-11 Score=119.79 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=80.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH-hC------CCCEEEEeCC--CCCCCCCHHHHHHccccCCCCcccccHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ-LH------DQRVVLVNQD--SFYHNLTEQELARVHEYNFDHPDAFDTEKLL 114 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~-l~------~~~~~~l~~D--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (338)
++.+|.+++|+|+||||||||++.|++- +. ..++.++.++ .++..++..++... . .+. . ...+.
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~-~-~~~----~-~~~v~ 529 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE-S-GVG----T-KEAIK 529 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHT-T-CSS----C-HHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHH-h-hcC----H-HHHHH
Confidence 9999999999999999999999999851 11 0124555544 23445555554432 1 111 1 45566
Q ss_pred HHHHHhccCC---ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 115 SSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 115 ~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
+.++.+.... ......+|.|+.+|+..++..+.+++++|+|||++++|+.
T Consensus 530 ~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~ 582 (986)
T 2iw3_A 530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582 (986)
T ss_dssp HHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHH
T ss_pred HHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 7777776532 1234578999999988888888999999999999999985
No 135
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.03 E-value=2.5e-10 Score=97.31 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+++.+|+|.|++||||||+++.|++.++ +.+++.|+++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~ 39 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDML 39 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHH
Confidence 3567899999999999999999999886 6888887665
No 136
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.03 E-value=2.6e-10 Score=94.65 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSF 85 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~~ 85 (338)
+.+|+|+|++||||||+++.|++.++..+ +.+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 56899999999999999999999887444 566765544
No 137
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.03 E-value=2.5e-09 Score=88.54 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~~ 85 (338)
...++.+|+|+|++||||||+++.|++.+...+ +.+++.|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 445789999999999999999999999886433 456665543
No 138
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.03 E-value=4.2e-11 Score=100.60 Aligned_cols=74 Identities=11% Similarity=0.273 Sum_probs=42.7
Q ss_pred hhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHH-HHHhhcCcchhhhhccCcC-ccccEEecCCCCcHHHHHHHHHH
Q 019592 167 ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVL-DQYSKFVKPAFDDFILPTK-KYADIIIPRGGDNHVAIDLIVQH 244 (338)
Q Consensus 167 ~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~-~~~~~~~~p~~~~~i~~~~-~~aD~iI~~~~~~~~~~~~~~~~ 244 (338)
..+|.+|||++|.+++++|+..|... .+... ..+.......|..+..++. ..+|++|+++. +++++.+.
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~r~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~----~~~~v~~~ 193 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRGRS-----EELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL----DVKTQIEL 193 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHTCH-----HHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS----CHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCh-----hhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC----CHHHHHHH
Confidence 35689999999999999999887421 11100 0122222233333333334 67899998774 34445555
Q ss_pred HHHHh
Q 019592 245 IRTKL 249 (338)
Q Consensus 245 i~~~l 249 (338)
|.+.+
T Consensus 194 I~~~l 198 (205)
T 2jaq_A 194 IMNKL 198 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 139
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.00 E-value=4.4e-10 Score=94.73 Aligned_cols=168 Identities=13% Similarity=0.190 Sum_probs=89.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCcccc
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 128 (338)
++|.|.||+||||+|.|+.|++.++ +.+++..++++. +... .+.....+.+. +..|..+.-
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~----~i~~---------~t~lg~~~~~~---~~~G~lvpd 61 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILRE----AVQK---------GTPLGKKAKEY---MERGELVPD 61 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH----HHHH---------TCHHHHHHHHH---HHHTCCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHH----HHHh---------cChhhhhHHHH---HhcCCcCCH
Confidence 3688999999999999999999986 888888765521 1100 00000001111 111211100
Q ss_pred ccccCcCCccCCCCccccCCCcEEEEeccc-cccchH-----HH---hhcCeEEEEecCHHHHHHHHHhhCccc------
Q 019592 129 PNYDFKSYKNNVFPARRVNPSDVILLEGIL-VFHDSR-----VR---ELMNMKIFVDTDADVRLARRIRRDTVE------ 193 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vlIldg~~-~~~d~~-----~~---~~~d~~i~l~~~~~~~~~R~~~R~~~~------ 193 (338)
.....-.. ..+...+.+|+||.= ...+.. +. ..+|.+|++++|.++.++|+..|....
T Consensus 62 ~iv~~lv~-------~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y 134 (206)
T 3sr0_A 62 DLIIALIE-------EVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVY 134 (206)
T ss_dssp HHHHHHHH-------HHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEE
T ss_pred HHHHHHHH-------HhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCcee
Confidence 00000000 011223348899842 221111 11 136789999999999999999884110
Q ss_pred ---------------c-C---CCHHHHHHHHhhcCcchhhhhccCcCccccE-EecCCCCcHHHHHHHHHHHHHHhc
Q 019592 194 ---------------K-G---RDIATVLDQYSKFVKPAFDDFILPTKKYADI-IIPRGGDNHVAIDLIVQHIRTKLG 250 (338)
Q Consensus 194 ---------------~-~---~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~-iI~~~~~~~~~~~~~~~~i~~~l~ 250 (338)
+ . ..+...+..|.+...|..+.| .+...+ .|+.+ .+++++.+.|.+.|.
T Consensus 135 ~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y----~~~~~l~~Idg~----~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 135 HVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYY----KKKGILRIIDAS----KPVEEVYRQVLEVIG 203 (206)
T ss_dssp ETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHH----HTTTCEEEEETT----SCHHHHHHHHHHHHC
T ss_pred eeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHH----HhcCCEEEEECC----CCHHHHHHHHHHHHc
Confidence 1 1 123344566777777765555 222223 34322 356677777776654
No 140
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.99 E-value=4.9e-10 Score=96.04 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..++.+|+|.|++||||||+++.|++.++ +.+++.|+++
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~ 42 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLL 42 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHH
Confidence 34578999999999999999999999875 7788887655
No 141
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.98 E-value=2.2e-10 Score=97.67 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=25.5
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
.|+|||| ++++|.+++|+||||||||||++.|++.+
T Consensus 12 ~l~~isl---------------~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRG---------------SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------------------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCce---------------ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999 99999999999999999999999999988
No 142
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.96 E-value=9.8e-10 Score=93.92 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=29.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+|+|.|++||||||+++.|++.++ +.+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHH
Confidence 689999999999999999999885 6788877654
No 143
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.96 E-value=1.1e-09 Score=93.27 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=31.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
++..|+|.|++||||||+++.|++.++ +.+++.|+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li 40 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDML 40 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHH
Confidence 356899999999999999999999886 7888887654
No 144
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.95 E-value=2e-09 Score=92.63 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+..|+|.|++||||||+++.|++.++ +.+++.|+++
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li 51 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDML 51 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHH
Confidence 4567899999999999999999999886 7788887654
No 145
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.95 E-value=5.2e-09 Score=86.07 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE--EEEeCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV--VLVNQD 83 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~--~~l~~D 83 (338)
.++.+|+|+|++||||||+++.|++.+.+.++ ..++.|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 35889999999999999999999998844343 334444
No 146
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.92 E-value=3.9e-10 Score=108.67 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=80.1
Q ss_pred cCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC-CC---CCCCCCHHHH--HH-
Q 019592 24 DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ-DS---FYHNLTEQEL--AR- 96 (338)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~-D~---~~~~l~~~~~--~~- 96 (338)
+||+++|... .+.+.... .+.+|.+++|+|+||||||||+++|++.+.|..-..... +. .+........ ..
T Consensus 25 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 4566666432 12333333 568999999999999999999999999886521100000 00 0111111100 00
Q ss_pred ---c-cccCCCC----cc----cc--------cHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEE
Q 019592 97 ---V-HEYNFDH----PD----AF--------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 97 ---~-~~~~~~~----~~----~~--------~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
. ..+.++. +. .. ....+.+.+..+...... ....+|.++.+++..+.+.+.+++++|+
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlL 182 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFF 182 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 0011111 10 00 011244556666554322 3347888999998888888899999999
Q ss_pred eccccccchH
Q 019592 155 EGILVFHDSR 164 (338)
Q Consensus 155 dg~~~~~d~~ 164 (338)
|||++.+|+.
T Consensus 183 DEPTs~LD~~ 192 (538)
T 1yqt_A 183 DEPSSYLDIR 192 (538)
T ss_dssp ESTTTTCCHH
T ss_pred ECCcccCCHH
Confidence 9999999985
No 147
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.91 E-value=4.6e-09 Score=86.49 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
++.+|+|+|++||||||+++.|++.++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567999999999999999999999876
No 148
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.90 E-value=3e-09 Score=89.98 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=34.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC-CCC--EEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH-DQR--VVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~-~~~--~~~l~~D~~~ 86 (338)
...++.+|+|.|++||||||+++.|++.++ ..+ +.+++.|.+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 457789999999999999999999999886 233 6667655543
No 149
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.90 E-value=3.1e-10 Score=114.93 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=45.0
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
+.++|++++|+....+.+.....++..|.+++|.|+||||||||++.|++.+.+
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 446888888864434556677778999999999999999999999999998875
No 150
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.89 E-value=8.2e-09 Score=87.39 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV 80 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l 80 (338)
++.+|.|.|++||||||+++.|++.+...+..++
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 5899999999999999999999999876555333
No 151
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.89 E-value=8.2e-09 Score=87.33 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=27.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~ 77 (338)
+|.+|.|.|++||||||+++.|++.+...++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999999998875554
No 152
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.88 E-value=4.8e-09 Score=90.09 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=27.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~ 77 (338)
++.+|.|.|++||||||+++.|++.+...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999998875443
No 153
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.88 E-value=6.4e-10 Score=108.43 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=82.5
Q ss_pred cCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe-CCC---CCCCCCHHHH----H
Q 019592 24 DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN-QDS---FYHNLTEQEL----A 95 (338)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~-~D~---~~~~l~~~~~----~ 95 (338)
+||+++|.... ..+.... .+.+|.++||+|+||||||||++.|++.+.|..-.... .+. .+........ .
T Consensus 95 ~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 67777774321 2344444 57899999999999999999999999988653111000 000 0111111110 0
Q ss_pred H--c-cccCCCC----cc----cc--------cHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEE
Q 019592 96 R--V-HEYNFDH----PD----AF--------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (338)
Q Consensus 96 ~--~-~~~~~~~----~~----~~--------~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIl 154 (338)
. . ..+.++. +. .. ..+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 0 0000111 10 00 012344566666554332 3347899999998888888999999999
Q ss_pred eccccccchH
Q 019592 155 EGILVFHDSR 164 (338)
Q Consensus 155 dg~~~~~d~~ 164 (338)
|||++++|+.
T Consensus 253 DEPTs~LD~~ 262 (607)
T 3bk7_A 253 DEPSSYLDIR 262 (607)
T ss_dssp ECTTTTCCHH
T ss_pred ECCcccCCHH
Confidence 9999999985
No 154
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.87 E-value=4e-08 Score=82.63 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+..|+|.|+.||||||+++.|++.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999999886
No 155
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.87 E-value=8.9e-09 Score=85.42 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=33.6
Q ss_pred hcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 42 ~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
|..++++.+|+|+|+|||||||+++.|++.+. .+...++.|++
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~-~g~i~i~~d~~ 45 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPG-VPKVHFHSDDL 45 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTCSS-SCEEEECTTHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhccC-CCeEEEcccch
Confidence 44678899999999999999999999999743 45667777654
No 156
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.86 E-value=1.4e-09 Score=89.87 Aligned_cols=173 Identities=15% Similarity=0.181 Sum_probs=79.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE--eCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCCccc
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLV--NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l--~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 127 (338)
.|.|+||||||||||++.|.+.++. .+.+. .+- +.....+. .-..|.|- ..+.+.+. +..+..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~-~~~~svs~TT---R~pR~gE~-~G~dY~Fv-----s~~eF~~~---i~~g~flE 69 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD-SFGFSVSSTT---RTPRAGEV-NGKDYNFV-----SVDEFKSM---IKNNEFIE 69 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT-TEEECCCEEC---SCCCTTCC-BTTTBEEC-----CHHHHHHH---HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC-CeEEEEEEec---cCCCCCCc-CCceeEee-----cHHHHHHH---HHcCCEEE
Confidence 3789999999999999999887642 22211 110 11000000 00122232 22223332 33344443
Q ss_pred cccccCcCCccC-CCCccccCCCcEEEEeccccccchHHHhhc--C-eEEEEecCH-HHHHHHHHhhCccccCCCHHHHH
Q 019592 128 IPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRELM--N-MKIFVDTDA-DVRLARRIRRDTVEKGRDIATVL 202 (338)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~~~~~~~vlIldg~~~~~d~~~~~~~--d-~~i~l~~~~-~~~~~R~~~R~~~~~~~~~~~~~ 202 (338)
+-.+.....--. ......+..++.+|+|.-..+. ..+++.+ + ..||+..|. +...+|+..|.. + +.+.+.
T Consensus 70 ~~~~~g~~YGt~~~~v~~~l~~g~~vil~id~~g~-~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~-e---~~e~i~ 144 (186)
T 1ex7_A 70 WAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGV-KSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-E---TEESIN 144 (186)
T ss_dssp EEEETTEEEEEEHHHHHHHHHHTSEEEEECCHHHH-HHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-S---CHHHHH
T ss_pred EEEEcCceeeeecceeeehhhCCCEEEecCCHHHH-HHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC-C---CHHHHH
Confidence 333322111100 0011223456788998866654 4455433 2 568887665 555556556642 2 222332
Q ss_pred HHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHH
Q 019592 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 245 (338)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i 245 (338)
..+..... ..... .....|+||.|+ +.+.+++++.+.|
T Consensus 145 ~Rl~~a~~-e~~~~---~~~~fD~vIvNd-dle~a~~~l~~iI 182 (186)
T 1ex7_A 145 KRLSAAQA-ELAYA---ETGAHDKVIVND-DLDKAYKELKDFI 182 (186)
T ss_dssp HHHHHHHH-HHHHH---TTTCSSEEEECS-SHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhc---cccCCcEEEECc-CHHHHHHHHHHHH
Confidence 22222110 00100 124579999887 4444444444433
No 157
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.85 E-value=1.1e-08 Score=85.76 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
++.+|+|+|++||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
No 158
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.85 E-value=1.4e-09 Score=92.98 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=23.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
++.++.+|.|.|++||||||+++.|++.+..
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999999998863
No 159
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.85 E-value=1.3e-09 Score=89.93 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=24.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
++.+++|+||||||||||++.|.+.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 567999999999999999999999875
No 160
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.83 E-value=1.9e-09 Score=91.77 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=30.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+..||.|++||||||+++.|++.++ +.+++.++++
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdll 43 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG---IPQISTGDML 43 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC---CCeeechHHH
Confidence 356789999999999999999999886 7888887654
No 161
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.82 E-value=7.6e-09 Score=87.68 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.|+|+|++||||||+++.|++.++ +.+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g---~~~i~~d~~~ 35 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDML 35 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHH
Confidence 589999999999999999999875 6777776554
No 162
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.80 E-value=7.5e-10 Score=107.81 Aligned_cols=121 Identities=14% Similarity=0.195 Sum_probs=74.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC------CCCCCCHHHH-HH-----cc-----ccCCC---
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS------FYHNLTEQEL-AR-----VH-----EYNFD--- 103 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~------~~~~l~~~~~-~~-----~~-----~~~~~--- 103 (338)
...+|.++||.||||||||||+++|++.+.|..-.+..... ++........ .. .. .+...
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 46789999999999999999999999988753211100000 0111111000 00 00 00000
Q ss_pred ---C-----------cccccHHHHHHHHHHhccCCcc--ccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 104 ---H-----------PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 104 ---~-----------~~~~~~~~l~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
. ....+...+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|||++++|+.
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~ 255 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHH
Confidence 0 0011224566677777665433 34578888889888888888999999999999999974
No 163
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.80 E-value=6.2e-10 Score=91.11 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=59.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccc--c---HHHHHHHH-
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAF--D---TEKLLSSM- 117 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~l~~~l- 117 (338)
++++|.+++|+|+|||||||+++.+.. +..+++.|.+ ..+.+.++... . .+.+....
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~~~d~~------------~g~~~~~~~~~~~~~~~~~~~~~~~~ 67 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHFK-----PTEVISSDFC------------RGLMSDDENDQTVTGAAFDVLHYIVS 67 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHSC-----GGGEEEHHHH------------HHHHCSSTTCGGGHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHcc-----CCeEEccHHH------------HHHhcCcccchhhHHHHHHHHHHHHH
Confidence 889999999999999999999996432 1222222211 01112222111 1 11111111
Q ss_pred HHhccCCcc---ccccccCcCCccCCCCccccCCCcEEEEeccccccchHHHhhc
Q 019592 118 EKLRHGQAV---DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM 169 (338)
Q Consensus 118 ~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~~~~ 169 (338)
..+..+... .....+.+..+++..+.+...+++++++|+|+..+|+......
T Consensus 68 ~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 68 KRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred HHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 112222211 1112233444455555666788999999999999887655443
No 164
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.79 E-value=9.9e-10 Score=105.66 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=69.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC---CC---CCCCCCHHHH----HH--c-----cccCCCCc--
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ---DS---FYHNLTEQEL----AR--V-----HEYNFDHP-- 105 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~---D~---~~~~l~~~~~----~~--~-----~~~~~~~~-- 105 (338)
.++|.++||+||||||||||+++|++.+.|..-.+... +. .+........ .. . ..+....+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 56899999999999999999999999887531100000 00 0000000000 00 0 00000000
Q ss_pred --ccc--------cHHHHHHHHHHhccCCc--cccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 106 --DAF--------DTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 106 --~~~--------~~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
... ......+.++.+..... .....+|.++.+++..+.+.+.+++++|+|||++++|+.
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~ 172 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 000 01123344555444322 234578888899988888888999999999999999984
No 165
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.79 E-value=4.3e-09 Score=89.54 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
..++|.+++|+||||||||||++.|.+.+++
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3578999999999999999999999998863
No 166
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.76 E-value=4.9e-09 Score=89.18 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=26.9
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 43 ~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
+...+|.+|.|.|++||||||+++.|++.+..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567999999999999999999999998864
No 167
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.76 E-value=1.1e-09 Score=97.47 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=76.3
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE--EeCCCCCCCCCHHHHHHcc
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL--VNQDSFYHNLTEQELARVH 98 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~--l~~D~~~~~l~~~~~~~~~ 98 (338)
+.+++|+|+|+ .+.+......+++|.+++|+||||||||||++.|++.+ .|-.+ +.++..+...+..+ .
T Consensus 102 i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~----~ 172 (305)
T 2v9p_A 102 FNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLAD----T 172 (305)
T ss_dssp HHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTT----C
T ss_pred EEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHH----H
Confidence 55677887775 34555666699999999999999999999999999998 34332 23333221111100 0
Q ss_pred ccCCCCcccccHHHHHHHHHH-hccCCccccccccCcCCccCCCCccccCCCcEEEEeccccccchHHH
Q 019592 99 EYNFDHPDAFDTEKLLSSMEK-LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (338)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~~~ 166 (338)
...+. +. .. +.+.+.+.. +..+- ....+|.++.+| +++.+..++++| ++.+|+...
T Consensus 173 ni~~~-~~-~~-~~~~~~i~~~L~~gl--dg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~ 229 (305)
T 2v9p_A 173 RAALV-DD-AT-HACWRYFDTYLRNAL--DGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAE 229 (305)
T ss_dssp SCEEE-EE-EC-HHHHHHHHHTTTGGG--GTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTC
T ss_pred hhccC-cc-cc-HHHHHHHHHHhHccC--CccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHH
Confidence 11111 11 11 133444554 32221 234688888888 677788999998 666676543
No 168
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.75 E-value=1.6e-08 Score=82.90 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
+.+|.|+|++||||||+++.|++. ..++.+++.|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~--~~~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK--NPGFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--STTEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh--cCCcEEecHHHH
Confidence 578999999999999999999983 124788887653
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.73 E-value=1.8e-08 Score=87.72 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
.+|+|+|++||||||+++.|++.++ ..+++.|++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~---~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG---WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC---CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC---CeEEeccHH
Confidence 5899999999999999999999886 678888885
No 170
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.72 E-value=3.5e-09 Score=104.97 Aligned_cols=38 Identities=5% Similarity=-0.087 Sum_probs=31.9
Q ss_pred ccccccCcCCccCCCCccccCCCc--EEEEeccccccchH
Q 019592 127 DIPNYDFKSYKNNVFPARRVNPSD--VILLEGILVFHDSR 164 (338)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~--vlIldg~~~~~d~~ 164 (338)
....+|.++.+|+..+++.+..++ ++++|||++++|+.
T Consensus 199 ~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 199 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 345789999999888788877777 99999999999974
No 171
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.67 E-value=5.4e-08 Score=86.78 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=69.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHccccCCCCcccccHH--H-HHHHHHHhccCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTE--K-LLSSMEKLRHGQ 124 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~-l~~~l~~l~~~~ 124 (338)
+.+|.|+|++||||||+++.|++.+ .++.+++.|.+...+ ... ...+ ...+... . ..+.+....
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~--~~~~~i~~D~~r~~~-----~~~-~~g~--~~~~~~~~~~~~~~~~~~~~--- 68 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN--PGFYNINRDDYRQSI-----MAH-EERD--EYKYTKKKEGIVTGMQFDTA--- 68 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS--TTEEEECHHHHHHHH-----TTS-CCCC-----CCHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC--CCcEEecccHHHHHh-----ccC-Cccc--ccccchhhhhHHHHHHHHHH---
Confidence 4789999999999999999999864 248888887432110 000 0000 0011111 1 111111100
Q ss_pred ccccccccCcCCccCCCCcccc---CCCcEEEEeccccccc--hHHHhh-----c-CeEEEEecCHHHHHHHHHhhCccc
Q 019592 125 AVDIPNYDFKSYKNNVFPARRV---NPSDVILLEGILVFHD--SRVREL-----M-NMKIFVDTDADVRLARRIRRDTVE 193 (338)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~---~~~~vlIldg~~~~~d--~~~~~~-----~-d~~i~l~~~~~~~~~R~~~R~~~~ 193 (338)
...+ .....+|+|+...... ..+.+. . ..+||+++|.+++++|...|..
T Consensus 69 ------------------~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~-- 128 (301)
T 1ltq_A 69 ------------------KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT-- 128 (301)
T ss_dssp ------------------HHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG--
T ss_pred ------------------HHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC--
Confidence 0011 3456789998664311 122211 1 2789999999999999998864
Q ss_pred cCCCHHHHHHHHhh
Q 019592 194 KGRDIATVLDQYSK 207 (338)
Q Consensus 194 ~~~~~~~~~~~~~~ 207 (338)
+....+.+..++..
T Consensus 129 ~~~~~e~i~~~~~~ 142 (301)
T 1ltq_A 129 KAVPIDVLRSMYKS 142 (301)
T ss_dssp GCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 23334445555444
No 172
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.67 E-value=6.2e-08 Score=80.24 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=29.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+.+++|+|+|||||||+++.|++.+. +..+++.|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~--g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC--CeEEEcccchh
Confidence 57899999999999999999998543 45677776553
No 173
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.67 E-value=5.4e-08 Score=81.34 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLV 80 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l 80 (338)
+|+|.|+.||||||.++.|++.|...+..++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 6899999999999999999998875554333
No 174
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.65 E-value=8.7e-09 Score=102.17 Aligned_cols=40 Identities=8% Similarity=-0.122 Sum_probs=31.7
Q ss_pred cccccCcCCccCCCCccccCCC---cEEEEeccccccchHHHh
Q 019592 128 IPNYDFKSYKNNVFPARRVNPS---DVILLEGILVFHDSRVRE 167 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~---~vlIldg~~~~~d~~~~~ 167 (338)
...+|.++.+|+..+++.+.++ +++++|||++++|+....
T Consensus 541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~ 583 (670)
T 3ux8_A 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA 583 (670)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHH
T ss_pred chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHH
Confidence 3478999999987777776554 699999999999886443
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.65 E-value=8e-08 Score=79.93 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.++.+|+|+||||||||||++.|.+.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999999999765
No 176
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.63 E-value=5.4e-08 Score=81.43 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+++.+++|+|||||||||+++.|.+.++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3577899999999999999999999875
No 177
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.63 E-value=3.1e-09 Score=89.69 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=55.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-E--EEEeCCCCCCCCCHHHHHHccccCCCCc-ccc------------
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-V--VLVNQDSFYHNLTEQELARVHEYNFDHP-DAF------------ 108 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-~--~~l~~D~~~~~l~~~~~~~~~~~~~~~~-~~~------------ 108 (338)
+++.+++|.|+||||||||++.|++. .+. | + ..+.... . . ......+.++.+ +.+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~-~-~-----~~~~ig~v~q~~~enl~~~~~~~~~~~~ 91 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPA-V-E-----AGEKLGFLPGTLNEKIDPYLRPLHDALR 91 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECS-C-C-----TTCCCCSSCC------CTTTHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCc-h-h-----hhcceEEecCCHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999998 541 1 1 1111110 0 0 000112222222 000
Q ss_pred ---cHHHHHHHHHHhccCCccccccccCcCCccCCCCccccCCCcEEEEeccccc
Q 019592 109 ---DTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (338)
Q Consensus 109 ---~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~ 160 (338)
+...+.+.+.. ..++.+++..+++.+.+++++|+|||+++
T Consensus 92 ~~~~~~~~~~~l~~------------glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 92 DMVEPEVIPKLMEA------------GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp TTSCTTHHHHHHHT------------TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HhccHHHHHHHHHh------------CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 00111122211 23888888888888899999999999988
No 178
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.61 E-value=8.7e-11 Score=108.98 Aligned_cols=125 Identities=11% Similarity=-0.047 Sum_probs=73.2
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcE--------------------EEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPF--------------------VIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
.+.++...|++|++ .+.+|. +++|+|+||||||||++.|.+.+.+
T Consensus 31 ~k~~~~~~l~~is~---------------~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 31 RKIISQEILNLIEL---------------RMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp GCSSCHHHHHHHHH---------------HHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred cccCCHHHhhhccc---------------eecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 45556667899999 666666 9999999999999999999997664
Q ss_pred CC-E-----------EEEeCCCCCCCCCHHHHHHccccCCCCccc-ccHHHHHHHHHHhccCCccccccccCc--CCccC
Q 019592 75 QR-V-----------VLVNQDSFYHNLTEQELARVHEYNFDHPDA-FDTEKLLSSMEKLRHGQAVDIPNYDFK--SYKNN 139 (338)
Q Consensus 75 ~~-~-----------~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~~~~~~~~--~~~~~ 139 (338)
.. . .++.++..+..++.. +.|.- .....+.+.+..+........+.++.+ +.+++
T Consensus 96 ~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~----------D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv 165 (413)
T 1tq4_A 96 EEGAAKTGVVEVTMERHPYKHPNIPNVVFW----------DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI 165 (413)
T ss_dssp STTSCCCCC----CCCEEEECSSCTTEEEE----------ECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHH
T ss_pred cCceEEECCeecceeEEeccccccCCeeeh----------HhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHH
Confidence 21 1 122222221111111 11110 011224455555544332222347776 55554
Q ss_pred CCCccccC----------CCcEEEEeccccccchH
Q 019592 140 VFPARRVN----------PSDVILLEGILVFHDSR 164 (338)
Q Consensus 140 ~~~~~~~~----------~~~vlIldg~~~~~d~~ 164 (338)
..+.+... +++++++|+|+.++|+.
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~ 200 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTF 200 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHhcCCCeEEEEecCcccccCcccccCCHH
Confidence 43344444 78889999999988863
No 179
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.61 E-value=7.1e-08 Score=86.03 Aligned_cols=40 Identities=30% Similarity=0.447 Sum_probs=32.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-EEEEeCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-VVLVNQD 83 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-~~~l~~D 83 (338)
..++|.+++|+|+|||||||+++.|++.+.+. + +.+...|
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 78899999999999999999999999998653 2 4444444
No 180
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.60 E-value=4.3e-08 Score=94.43 Aligned_cols=39 Identities=26% Similarity=0.541 Sum_probs=31.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~ 84 (338)
+.+.+|+++|++||||||+++.|++.++.. .+.+++.|.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 347899999999999999999999987532 256666654
No 181
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.59 E-value=4.3e-08 Score=94.28 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=34.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC---EEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR---VVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~---~~~l~~D~~ 85 (338)
...++.+|+|+|+|||||||+++.|++.+.+.+ +.+++.|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 356899999999999999999999999987543 456766643
No 182
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.59 E-value=2.6e-07 Score=86.23 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=33.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
..+.+.+|.|+|++||||||+++.|++.++ +.+++.|.+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~D~~ 292 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTL 292 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCGGGS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEccchH
Confidence 455688999999999999999999998765 788888875
No 183
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.58 E-value=3.1e-08 Score=86.73 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~ 81 (338)
+.+++.+|+|.|+.||||||+++.|++.+. ++.++.
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~--~~~~i~ 55 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLCE--DWEVVP 55 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGCT--TEEEEC
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhcC--CCEEEe
Confidence 346789999999999999999999999884 255553
No 184
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.58 E-value=2.8e-08 Score=85.77 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=46.4
Q ss_pred hcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccC---------cCccccEEecCCCC---cH
Q 019592 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP---------TKKYADIIIPRGGD---NH 235 (338)
Q Consensus 168 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~---------~~~~aD~iI~~~~~---~~ 235 (338)
..|++||+++|.+++++|+.+|+.... .. ....|.......|..|+.+ +.....++|+.+.+ ..
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e-~~---~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~ 224 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEE-KG---IELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEV 224 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTT-TT---CCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCccc-cc---CCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCH
Confidence 579999999999999999988863221 11 0112333344556666543 12233456654432 33
Q ss_pred HHHHHHHHHHHHHh
Q 019592 236 VAIDLIVQHIRTKL 249 (338)
Q Consensus 236 ~~~~~~~~~i~~~l 249 (338)
..++.+++.|.+.+
T Consensus 225 ~~i~~i~~~i~~~l 238 (241)
T 2ocp_A 225 TKQEDLMREVNTFV 238 (241)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777776654
No 185
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.57 E-value=1.1e-06 Score=72.94 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
...++.+|+|+|.+||||+|+++.+.+.++..++.+++..+
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 34578899999999999999999999877544566666543
No 186
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.54 E-value=3.6e-07 Score=79.42 Aligned_cols=43 Identities=28% Similarity=0.528 Sum_probs=35.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~ 87 (338)
....+.+|.|+|++||||||+++.|++.++ .+..+++.|.+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHHHH
Confidence 346689999999999999999999999886 3467888887643
No 187
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.53 E-value=3.8e-08 Score=79.21 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=37.6
Q ss_pred ccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 16 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.|++ ..++++|| +++++.+++|.|+||||||||++.|++.++
T Consensus 15 ~~~g~~~~l~~vsl---------------~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 15 LRFGKKFAEILLKL---------------HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp HHHHHHHHHHHHHH---------------CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccc---------------ccCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45544 35799999 999999999999999999999999999883
No 188
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.53 E-value=4.5e-07 Score=88.02 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~ 84 (338)
++.+|.|+|.+||||||+++.|++.+...+ +..++.|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 688999999999999999999999883222 44444443
No 189
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.48 E-value=4.5e-07 Score=87.81 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=33.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSF 85 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---~~~~~l~~D~~ 85 (338)
.+++.+|.|+|.+||||||+++.|++.+.. ..+.+++.|.+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 346789999999999999999999998863 23677776653
No 190
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.48 E-value=2.3e-07 Score=84.52 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=33.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~ 84 (338)
..++|.+|+|+|+|||||||+++.|++.+.+. .+.+...|.
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 77899999999999999999999999998653 244444443
No 191
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.46 E-value=6.3e-10 Score=104.92 Aligned_cols=118 Identities=9% Similarity=-0.007 Sum_probs=65.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-E-EEEeCCCC----C-----------CCCCHHHHHHccccCCCCc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-V-VLVNQDSF----Y-----------HNLTEQELARVHEYNFDHP 105 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-~-~~l~~D~~----~-----------~~l~~~~~~~~~~~~~~~~ 105 (338)
.+.+|.+++|+|+||||||||+++|++.+.+. | - .+++.+.- + ..++..++. ++......+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~ 212 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA 212 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-cccccccCc
Confidence 78899999999999999999999999987542 3 2 44444210 0 000111000 000000000
Q ss_pred ccccHHHHHHHHHHhccCCccccccccCcCCccCCCCcc--ccCCCcE----EEEec-cccccchH
Q 019592 106 DAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPAR--RVNPSDV----ILLEG-ILVFHDSR 164 (338)
Q Consensus 106 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v----lIldg-~~~~~d~~ 164 (338)
.+.....+.+..+..........++.++.+++..+.+ .+.++++ +|+|+ |++.+|+.
T Consensus 213 --~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 213 --TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp --CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred --chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 0000001111111111111234567777777777777 7789999 99999 99988764
No 192
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.45 E-value=7.2e-07 Score=80.03 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC--CCCCCH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF--YHNLTE 91 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~--~~~l~~ 91 (338)
.++.+|.|+||+|||||||+..|++.++ ..+++.|.+ |+.++.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs~Ds~qvYr~mdI 82 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP---LEVINSDKMQVYKGLDI 82 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC---EEEEECCSSTTBSSCTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC---CcEEcccccccccceee
Confidence 4567999999999999999999999876 789999975 455443
No 193
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.43 E-value=2.7e-09 Score=90.23 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=24.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~ 77 (338)
+|+|.|++||||||+++.|++.++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~ 29 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999998864333
No 194
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.42 E-value=3.3e-07 Score=81.19 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=34.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~~ 87 (338)
...|.+|.|+|++||||||+++.|++.++ .++.+++.|.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDNDTFKQ 71 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECTHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechHhHH
Confidence 45689999999999999999999999874 3578888876643
No 195
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.42 E-value=4.6e-08 Score=98.11 Aligned_cols=53 Identities=8% Similarity=-0.016 Sum_probs=37.7
Q ss_pred HHHHHHhccCC---ccccccccCcCCccCCCCccccCC---CcEEEEeccccccchHHH
Q 019592 114 LSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNP---SDVILLEGILVFHDSRVR 166 (338)
Q Consensus 114 ~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~vlIldg~~~~~d~~~~ 166 (338)
.+.|..+..+. ......+|.++.+++..+.+...+ ++++|+|+|+.++|+...
T Consensus 711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~ 769 (842)
T 2vf7_A 711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADV 769 (842)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHH
T ss_pred HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHH
Confidence 44555555543 123457888888888777776664 799999999999987643
No 196
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.33 E-value=3.3e-07 Score=80.64 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=32.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+++ ++|.||+||||||+++.|++.+++ +...++..++.
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~ 81 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELL 81 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTC
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHH
Confidence 77777 999999999999999999999874 45566655543
No 197
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.32 E-value=2.1e-07 Score=81.65 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
+.++|+|+||||||||++.|.+...+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57899999999999999999998764
No 198
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.32 E-value=4e-07 Score=78.21 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=25.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~ 81 (338)
.+|||+|+.||||||+++.|.+.++ +.++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g---~~~~~ 31 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC---EEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CeEEe
Confidence 6899999999999999999998754 55544
No 199
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.31 E-value=2.8e-07 Score=77.49 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
++.++.+++|+|||||||||++++|++.++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 678999999999999999999999999885
No 200
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.30 E-value=3.8e-07 Score=92.01 Aligned_cols=54 Identities=7% Similarity=-0.058 Sum_probs=37.8
Q ss_pred HHHHHHhccCC-c--cccccccCcCCccCCCCccccCC---CcEEEEeccccccchHHHh
Q 019592 114 LSSMEKLRHGQ-A--VDIPNYDFKSYKNNVFPARRVNP---SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 114 ~~~l~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~---~~vlIldg~~~~~d~~~~~ 167 (338)
.+.+..+..+. . .....+|.++.+++..+.+.+.+ ++++|+|+|+.++|+....
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~ 885 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA 885 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHH
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHH
Confidence 34555555543 2 23457888888888777777654 5999999999999876443
No 201
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.28 E-value=4.8e-07 Score=91.61 Aligned_cols=40 Identities=5% Similarity=-0.128 Sum_probs=31.0
Q ss_pred cccccCcCCccCCCCccccCC---CcEEEEeccccccchHHHh
Q 019592 128 IPNYDFKSYKNNVFPARRVNP---SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~---~~vlIldg~~~~~d~~~~~ 167 (338)
...+|.++.+|+..+.+.... ++++|+|||+.++|+....
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~ 845 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVR 845 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHH
Confidence 347899999998777666543 5899999999999876433
No 202
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.28 E-value=3.4e-08 Score=89.32 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN 81 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~ 81 (338)
.++.+.+++|+|+|||||||+++.|++.+++. +...+.
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 67789999999999999999999999998763 444544
No 203
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.26 E-value=8.8e-08 Score=89.40 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=34.8
Q ss_pred cccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 17 HFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 17 ~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.+.+|. +++++| .+.++ +++|+|+||||||||+++|...++
T Consensus 44 ~i~nf~~l~~v~l---------------~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 44 EIRNLATITQLEL---------------ELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEETTEEEEEE---------------ECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred hhccccceeeEEE---------------ecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 344554 688888 99999 999999999999999999987775
No 204
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.23 E-value=1.4e-06 Score=69.29 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=30.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~ 84 (338)
.+..++|.|++||||||+++.+++.+.+.+ ..+++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 678999999999999999999999886544 55555543
No 205
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.22 E-value=8.4e-07 Score=89.85 Aligned_cols=53 Identities=8% Similarity=-0.037 Sum_probs=36.4
Q ss_pred HHHHHhccCC-c--cccccccCcCCccCCCCccccCC---CcEEEEeccccccchHHHh
Q 019592 115 SSMEKLRHGQ-A--VDIPNYDFKSYKNNVFPARRVNP---SDVILLEGILVFHDSRVRE 167 (338)
Q Consensus 115 ~~l~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~---~~vlIldg~~~~~d~~~~~ 167 (338)
+.|..+..+. . .....+|.++.+++..+.+.+.+ ++++|+|+|+.++|+....
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~ 903 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIR 903 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHH
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHH
Confidence 4455544432 1 23347888888888777776654 5999999999999876443
No 206
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.15 E-value=1.9e-06 Score=81.17 Aligned_cols=41 Identities=34% Similarity=0.500 Sum_probs=33.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-EEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-VVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~-~~~l~~D~ 84 (338)
..++|.+|+|+|+|||||||+++.|++.+.+. + +.+...|.
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 88999999999999999999999999988653 2 34444554
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.13 E-value=6.1e-07 Score=83.19 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=33.5
Q ss_pred CcccccccccCccccccCCCCCcchhhhcCCCCcEE--EEEeCCCCCcHHHHHHHHHHH
Q 019592 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFV--IGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i--I~I~G~sGSGKTTl~~~L~~~ 71 (338)
.+.|++..+++++| .++.|.+ ++|+|+||||||||++.|++.
T Consensus 22 ~~~y~~~~L~~vsl---------------~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 22 HVGFDSLPDQLVNK---------------SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CC--CHHHHHH---------------SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCeecCCCce---------------EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45565555777888 9999999 999999999999999999986
No 208
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.13 E-value=1.6e-06 Score=75.62 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~ 84 (338)
.+++.+++|+|||||||||+++.|++.+++ .+-..+..++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 578999999999999999999999998865 3444444443
No 209
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.11 E-value=2.1e-06 Score=87.10 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=32.8
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.+.++|++| ..+.+.+++|+|||||||||+++.++..
T Consensus 660 ~~V~ndvsl---------------~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 660 QYVPNNTDL---------------SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSCCEEEEE---------------CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ceecccccc---------------cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 566788888 8889999999999999999999998753
No 210
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.05 E-value=3.2e-06 Score=85.96 Aligned_cols=27 Identities=15% Similarity=0.072 Sum_probs=24.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..+.+.+++|+|||||||||+++.++.
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 788899999999999999999999843
No 211
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.05 E-value=2e-06 Score=72.63 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=26.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
.+|.+|.|.|++||||||+++.|++.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999999974
No 212
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.04 E-value=6.4e-06 Score=72.87 Aligned_cols=44 Identities=32% Similarity=0.377 Sum_probs=36.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC--CCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS--FYHNLT 90 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~--~~~~l~ 90 (338)
..+.+.+|+|+||+|||||||+..|++.++ ..+++.|+ +|+.++
T Consensus 6 ~~~~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~qvY~~~~ 51 (316)
T 3foz_A 6 KASLPKAIFLMGPTASGKTALAIELRKILP---VELISVDSALIYKGMD 51 (316)
T ss_dssp -CCCCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEECCTTTTBTTCC
T ss_pred cCCCCcEEEEECCCccCHHHHHHHHHHhCC---CcEEeccccccccccc
Confidence 345678999999999999999999999876 78899987 455554
No 213
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.03 E-value=2e-06 Score=81.14 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=34.8
Q ss_pred cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 019592 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (338)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~ 75 (338)
.|++++| .+++ .+++|+||||||||||+++|++.+.+.
T Consensus 19 ~l~~vsl---------------~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 19 GFFARTF---------------DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp TEEEEEE---------------ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cccceEE---------------EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4789999 8899 999999999999999999999998763
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.01 E-value=5.5e-07 Score=82.40 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=42.4
Q ss_pred cccCcccc---ccCCCCCcc---------hhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe
Q 019592 22 HMDGLEVR---NKETGQPTI---------SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN 81 (338)
Q Consensus 22 ~l~~~~~~---~~~~~~~~~---------~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~ 81 (338)
.+++++|+ |++...+.+ ......++++.+++|+|+|||||||+++.|.+.+++. +...+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 56777776 543111111 3344467889999999999999999999999998763 445554
No 215
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.98 E-value=6.5e-06 Score=72.94 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=35.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC--CCCCCH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF--YHNLTE 91 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~--~~~l~~ 91 (338)
++.+|+|+||+|||||||+..|++.++ ..+++.|.+ |+.++.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~QvYr~~~i 45 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSMQVYRGMDI 45 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGGGGBTTCCT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcccceeeeee
Confidence 356899999999999999999999876 789999976 665543
No 216
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.97 E-value=3.6e-06 Score=69.00 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.++|+|+||||||||++.|++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999885
No 217
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.97 E-value=5.3e-06 Score=75.12 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=41.9
Q ss_pred Cccccc-ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCC
Q 019592 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQD 83 (338)
Q Consensus 15 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D 83 (338)
.+.|++ ..++++++ ...++.+++|+|++|||||||++.|.+.+.+ ..+.+...|
T Consensus 36 ~~~~~~~~~l~~i~~---------------~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 36 DHRAAVRDLIDAVLP---------------QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp HHHHHHHHHHHHHGG---------------GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccccChHHHHHhCCc---------------ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 344543 34688888 8899999999999999999999999988754 235555554
No 218
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.96 E-value=8.1e-06 Score=72.93 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
.+.+|+|+||+||||||+++.|++.++ ..+++.|++
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~---~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP---CELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---CcEEeccch
Confidence 356899999999999999999999876 889999876
No 219
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.96 E-value=4.2e-06 Score=72.19 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=24.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
++.+|+|+|+|||||||+++.|++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999998775
No 220
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.95 E-value=2.7e-06 Score=77.26 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=30.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~ 75 (338)
++.+|.+++|.|+||||||||+++|++...+.
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 89999999999999999999999999998753
No 221
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.94 E-value=4.3e-06 Score=74.22 Aligned_cols=48 Identities=23% Similarity=0.139 Sum_probs=40.3
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--EEEEeCC
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--VVLVNQD 83 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~--~~~l~~D 83 (338)
..|+++++ .++++.+++|+|+||||||||++.|+..+.+. + +.+++.+
T Consensus 23 ~~Ld~i~~---------------~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 23 TGINDKTL---------------GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTHHHHHC---------------SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHHhc---------------CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 34789998 89999999999999999999999999987643 3 5666654
No 222
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.94 E-value=5.9e-06 Score=71.07 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHH--HH-hCCCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMII--QQ-LHDQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~--~~-l~~~~~~~l~~D~ 84 (338)
.++++.+++|.||||||||||++.|+ .. ....+..++..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 45789999999999999999999998 55 3344566666543
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.89 E-value=1.8e-05 Score=71.15 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=33.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~ 85 (338)
..++|.+++|+|+|||||||+++.|++.+.+. .+.+...|.+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 34679999999999999999999999988753 3455555543
No 224
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.89 E-value=6.6e-06 Score=77.02 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=39.6
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~ 75 (338)
..++++++.|.. ....+... .++.+|.+++|.|+||||||||++.|++...+.
T Consensus 132 l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 132 LQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 445666665532 12234444 599999999999999999999999999998753
No 225
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.88 E-value=1.4e-05 Score=73.20 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=35.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC--CCCCCCH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS--FYHNLTE 91 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~--~~~~l~~ 91 (338)
+.+|+|+||+|||||||+..|++.++ ..+++.|. +|+.++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds~QvYr~l~i 44 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDSMQVYKDIPI 44 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCTTTTBSSCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC---CeEeecCccceeccccc
Confidence 46899999999999999999999986 67899997 6776653
No 226
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.88 E-value=1.4e-05 Score=71.70 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=35.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~ 84 (338)
..+++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 7788999999999999999999999998764 3467777774
No 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.86 E-value=6.6e-06 Score=74.91 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=37.1
Q ss_pred cCccccccCCCCCcchhhhc-------CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 24 DGLEVRNKETGQPTISAAEN-------LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
..+++|+.....+++..-.. ...++.+++|+||+||||||+++.|.+.+++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 35677776655554443221 2345669999999999999999999998875
No 228
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.86 E-value=8.1e-06 Score=74.75 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=28.3
Q ss_pred CCCC--cEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 44 LHRQ--PFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 44 ~~~~--~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
.+.+ +..++|+|+||||||||++.|++.+++
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5667 899999999999999999999999875
No 229
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.86 E-value=1.2e-05 Score=71.60 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~ 84 (338)
++|.+|+|+|+|||||||+++.|++.+.+.+ +.+...|-
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 3688999999999999999999999987642 44444443
No 230
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.85 E-value=2e-05 Score=71.64 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------CCEEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--------~~~~~l~~D~~ 85 (338)
.++.+.+++|.|++|||||||++.|+..... ..+.+++....
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 6789999999999999999999999998731 12467776543
No 231
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.83 E-value=1.2e-05 Score=68.72 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=32.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH--hC------CCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ--LH------DQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~--l~------~~~~~~l~~D~ 84 (338)
-++++.+++|.|++|||||||++.|+.. ++ ..++.+++.+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3567899999999999999999999984 42 23467777654
No 232
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.83 E-value=1.3e-05 Score=65.49 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=26.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
...++ +.+|+|+|||||||++++|...+.
T Consensus 23 ~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 23 PFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp ECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 66667 899999999999999999998876
No 233
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.81 E-value=9.6e-06 Score=71.33 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
++++.+++|.|++|||||||+..|+..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999999997654
No 234
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.80 E-value=8.5e-06 Score=78.32 Aligned_cols=55 Identities=16% Similarity=0.047 Sum_probs=41.2
Q ss_pred cccccc-cccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHH--HHHHhC-CCCEEEEeCCC
Q 019592 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDM--IIQQLH-DQRVVLVNQDS 84 (338)
Q Consensus 16 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~--L~~~l~-~~~~~~l~~D~ 84 (338)
+.++++ .|++|++ ..++++.+++|+|+||||||||++. +++.++ ..+..+++..+
T Consensus 20 ~~~~g~~~Ld~i~~--------------G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 20 KMRTMIEGFDDISH--------------GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EECCCCTTHHHHTT--------------SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cccCCchhHHHhcC--------------CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 334444 4788877 2467899999999999999999999 678776 35667776544
No 235
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.80 E-value=8e-06 Score=74.83 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=28.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.++++.+++|.||+||||||+++.|++.+.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 889999999999999999999999999875
No 236
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.78 E-value=1.1e-05 Score=68.38 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
-++++.+++|+|+||||||||++.|++.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999999998654
No 237
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.77 E-value=2.4e-06 Score=83.43 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
|+|+|+||||||||++.|++.+.|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 999999999999999999998754
No 238
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=1.1e-05 Score=66.79 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.+++|+|+|||||||+++.|++.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 35799999999999999999999875
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.77 E-value=2.4e-05 Score=69.69 Aligned_cols=42 Identities=40% Similarity=0.636 Sum_probs=34.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~ 85 (338)
..+++.+|+|+|++||||||++..|+..+.+. .+.++..|.+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 45678999999999999999999999988643 4677777753
No 240
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=1.2e-05 Score=65.71 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.+++..++|.||+||||||+++.+++.+.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998774
No 241
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.70 E-value=2.8e-05 Score=67.19 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=29.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
..+++ ++|.||+||||||+++.+++.++ .+...++.
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~ 82 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 82 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeH
Confidence 66777 89999999999999999999886 44555544
No 242
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.69 E-value=1.2e-05 Score=65.25 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=24.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~ 75 (338)
+.+++|+|+||||||||++.|.+.+.+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3589999999999999999999998864
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.68 E-value=4e-06 Score=79.99 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=31.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN 81 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~ 81 (338)
.+..+..++|+|++||||||++++|.+.+++. +...+.
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 45678889999999999999999999998753 444443
No 244
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.67 E-value=3e-05 Score=69.57 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D 83 (338)
++..+++|+|++||||||+++.|.+.....++.++..|
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 35679999999999999999999997655566666554
No 245
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.65 E-value=7e-05 Score=71.69 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~ 85 (338)
....+.+|.++|.+||||||+++.|++.++.. ...+++.|++
T Consensus 31 ~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp --CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 34567899999999999999999999887522 3456777653
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.64 E-value=3.9e-05 Score=67.34 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
..+++ ++|.||+||||||+++.|++.+. .+...++.
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~ 106 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 106 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecH
Confidence 66666 89999999999999999999886 44555544
No 247
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.64 E-value=1.5e-05 Score=76.67 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=60.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhc
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR 121 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 121 (338)
.+.++.+++|.|++|||||||++.|++...+.+ +.++..++- ..+...... .++ ++... +....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-----~~~l~~~~~-~~g----~~~~~----~~~~g 342 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-----RAQLLRNAY-SWG----MDFEE----MERQN 342 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-----HHHHHHHHH-TTS----CCHHH----HHHTT
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-----HHHHHHHHH-HcC----CCHHH----HHhCC
Confidence 567899999999999999999999998876543 334433321 112111100 111 12111 11110
Q ss_pred cCC--ccccccccCcCCccCCCCccccCCCcEEEEeccccccchH
Q 019592 122 HGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (338)
Q Consensus 122 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlIldg~~~~~d~~ 164 (338)
... ......++.++.++...+.+...+++++|+| |+.++|..
T Consensus 343 ~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~ 386 (525)
T 1tf7_A 343 LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARG 386 (525)
T ss_dssp SEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSS
T ss_pred CEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhh
Confidence 000 1111235556666655555666889999999 99887654
No 248
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.62 E-value=2.5e-05 Score=78.38 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=31.8
Q ss_pred cccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
.+.++|++| . +.+.+++|+|||||||||+++.+++..
T Consensus 595 ~~vlndisl---------------~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNL---------------S-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEE---------------C-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeecccc---------------c-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 455678888 6 788999999999999999999999863
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.60 E-value=3.8e-05 Score=68.12 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=33.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSF 85 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---~~~~~l~~D~~ 85 (338)
.++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 46789999999999999999999998863 25788888864
No 250
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.60 E-value=0.00028 Score=62.07 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=33.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
+.+.+|.+-|.-||||||.++.|.+.|.+.++.++..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 4689999999999999999999999999988877654
No 251
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.59 E-value=5.1e-05 Score=69.57 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=27.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
.+++.+++|+||+||||||+++.|++.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 578899999999999999999999998875
No 252
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.58 E-value=5e-05 Score=61.35 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQD 83 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D 83 (338)
.+.+++|+|++||||||++..|...+... .+.++..|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 35689999999999999999999887543 35666554
No 253
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.58 E-value=2.4e-05 Score=65.27 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=25.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
...++..|+|+|++|||||||++.|.+.
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6788999999999999999999998763
No 254
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.55 E-value=5.3e-05 Score=70.40 Aligned_cols=39 Identities=33% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS 84 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~ 84 (338)
.++.+++|+||+||||||+++.|.+.+++. +-.++..|+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 578899999999999999999999998763 333333343
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.54 E-value=0.00011 Score=65.16 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=31.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~ 84 (338)
++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 7899999999999999999999998764 3466777664
No 256
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.54 E-value=3.8e-05 Score=76.64 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=23.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
+.+++|+|||||||||+++.+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 8999999999999999999999864
No 257
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.52 E-value=0.0001 Score=68.41 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~ 84 (338)
++.+|+|+|++||||||++..|+..+... .+.+++.|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 78999999999999999999999988753 466777764
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.51 E-value=6.6e-05 Score=63.05 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=32.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
.++++.+++|.|++|||||||++.|+. ....++.+++.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 467899999999999999999999998 3334577777764
No 259
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.51 E-value=0.0003 Score=66.48 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.+.+|.++|.+||||||+++.|++.+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999998765
No 260
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.49 E-value=8.3e-05 Score=68.66 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH--HhCC------CCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ--QLHD------QRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~--~l~~------~~~~~l~~D~ 84 (338)
-++++.+++|.|++|||||||++.|+- .+++ .++.+++.+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 356788999999999999999997653 2211 2367777765
No 261
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.48 E-value=9.3e-05 Score=70.29 Aligned_cols=39 Identities=8% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDS 84 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~----~~~~~l~~D~ 84 (338)
+++.+|.|+|.+||||||+++.|++.|+. ..+.+++.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 46799999999999999999999999974 2356777765
No 262
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.46 E-value=7.7e-05 Score=67.53 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=34.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~ 84 (338)
...++.+|+|+|++||||||+++.|++.+.+ ..+.+++.|.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 7889999999999999999999999987642 3467777664
No 263
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.43 E-value=8.3e-05 Score=60.47 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQ 82 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~ 82 (338)
...+++|+|++||||||+++.|.+.+... .+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 35689999999999999999999876533 2444443
No 264
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.43 E-value=5.8e-05 Score=63.90 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQD 83 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D 83 (338)
.++++.+++|.|++|||||||++.|+..+.+ ..+.+++.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3567899999999999999999999976532 346666655
No 265
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.41 E-value=0.00015 Score=64.34 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=33.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~ 85 (338)
..+ +.+|+++|++|+||||++..|+..+.. ..+.+++.|.+
T Consensus 95 ~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 95 DKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 544 899999999999999999999988753 34677777753
No 266
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.40 E-value=7.7e-05 Score=76.79 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.+++|+|||||||||+++.+ +.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 799999999999999999999 6543
No 267
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.40 E-value=7.2e-05 Score=68.40 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
..+.+ +++|+|+|||||||+..+|.-.+
T Consensus 20 ~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 20 EFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 66777 78899999999999999998654
No 268
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.33 E-value=4.4e-05 Score=67.88 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=20.6
Q ss_pred cCCccccccc-ccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 13 SSGVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 13 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
+..++|++.. +++++| . |+|+|+||||||||++.|.+.
T Consensus 3 ~l~~~~~~~~~l~~~~~---------------~------I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEF---------------T------LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ---------------CE---------------E------EEEEEETTSSHHHHHHHHHC-
T ss_pred CCcceECCEEEEcCCCE---------------E------EEEECCCCCCHHHHHHHHhCC
Confidence 4457776655 688888 3 399999999999999998764
No 269
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.32 E-value=0.00027 Score=60.99 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
-+.|.|++|+||||+++.|++.++. .+..++..++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~-~~~~i~~~~~~ 82 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFV 82 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC-CEEEECSCSST
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCC-CEEEEeHHHHH
Confidence 3889999999999999999998863 35666655443
No 270
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.31 E-value=0.00014 Score=66.06 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
..+++ +.+|.|+|||||||++++|....
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 77778 99999999999999999998754
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.29 E-value=0.00021 Score=58.97 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=28.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
.+..|.|+|++||||||++..|++.. ..+++.|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g----~~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG----HRLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT----CEEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC----CeEEecch
Confidence 57889999999999999999999854 36777774
No 272
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.26 E-value=0.0047 Score=55.22 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+.-+.|.||+|+|||++++.+++.+....+..++..++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 34567889999999999999999998843445556655443
No 273
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.26 E-value=9.3e-05 Score=68.70 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
|+|+|+||||||||++.|.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999998654
No 274
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.23 E-value=0.00028 Score=66.94 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+++ ++|.||+|+||||++++|++.++ .++..++..++.
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~ 101 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFV 101 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGT
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHH
Confidence 56666 89999999999999999999886 456677765554
No 275
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.22 E-value=0.00018 Score=59.24 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
....|+|+|++|||||||++.|.+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35789999999999999999999854
No 276
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.21 E-value=0.00031 Score=63.93 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=43.2
Q ss_pred cccccccCccccccCCCCCcch--------------hhhcCCCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 18 FSGFHMDGLEVRNKETGQPTIS--------------AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
-+.+.++|+++.||.... .+. .....+.+|..++|.|++|+||||+++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~er~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBC-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCcc-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 356778999999986522 222 455678899999999999999999999998865
No 277
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.20 E-value=3.3e-05 Score=65.66 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
.+++|+|||||||||++++|+..+.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccccc
Confidence 57899999999999999999999875
No 278
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.17 E-value=0.0027 Score=55.88 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
.+.-+.|.||+|+||||+++.+++.++. .+..++...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-~~~~i~~~~l 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA-TFLNISAASL 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC-EEEEEESTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEeeHHHH
Confidence 3567899999999999999999998762 3445555443
No 279
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.17 E-value=0.00019 Score=64.76 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
+..++|.||+|+||||+++.|++.++. .+...+...
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~ 86 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPV 86 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechH
Confidence 367899999999999999999999863 244444443
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.15 E-value=0.00032 Score=65.28 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~ 85 (338)
.++.+|+++|++||||||++..|+..+.. ..+.+++.|.+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 35899999999999999999999987754 34677787754
No 281
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.14 E-value=0.00032 Score=61.79 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=48.4
Q ss_pred cCCCcEEEEeccccccchHHHh--hcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCcc
Q 019592 146 VNPSDVILLEGILVFHDSRVRE--LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~~--~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~ 223 (338)
+..++.+|+|.-..+.. .++. ..-+.|||.+|.-..++++++|... ...+.+..+.... ..+| ...
T Consensus 186 ~~~gk~viLdid~qg~~-~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~---e~~~~~~~r~~k~----e~e~----~~~ 253 (292)
T 3tvt_A 186 AEKGKHCILDVSGNAIK-RLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE---EQAKKTYERAIKM----EQEF----GEY 253 (292)
T ss_dssp HHHTCEEEECCCTHHHH-HHHHTTCCCEEEEECCSCHHHHHHTCTTSCT---THHHHHHHHHHHH----HHHH----TTT
T ss_pred HHcCCcEEEeccchhhh-hcccccccceEEEEECCCHHHHHHHHhCCCc---hhHHHHHHHHHHH----HHhh----hhh
Confidence 34667888887554432 2222 2247899999877777666554321 1222222222111 1111 456
Q ss_pred ccEEecCCCCcHHHHHHHHHHHHHH
Q 019592 224 ADIIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 224 aD~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
.|+||.|+ +.+.+++++.+.|.+.
T Consensus 254 fD~vIvNd-dle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 254 FTGVVQGD-TIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp CSEEECCS-SHHHHHHHHHHHHHHH
T ss_pred CCEEEECc-CHHHHHHHHHHHHHHh
Confidence 89999887 4445555555555433
No 282
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.13 E-value=0.00047 Score=55.43 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=28.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
.+.-+.|+|+||+||||++..|.+ .+..+++.|.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~----rG~~lvaDD~ 48 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID----RGHQLVCDDV 48 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH----TTCEEEESSE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH----cCCeEecCCE
Confidence 577899999999999999999988 4677777664
No 283
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.13 E-value=0.00021 Score=63.57 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
-.+.+++|.|+||||||||++.|. .+.+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 357899999999999999999999 6653
No 284
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.13 E-value=0.00014 Score=64.67 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=25.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
.+.+++|.|+||||||||++.|++...+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 5779999999999999999999997764
No 285
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.10 E-value=0.00037 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
+.+.+|.|+|||||||++.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999998654
No 286
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.09 E-value=0.00018 Score=65.25 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.+.+++|+|+||||||||++.|.+.+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 577999999999999999999998654
No 287
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.07 E-value=0.00033 Score=57.86 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
....|+|.|++|||||||++.|.+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3567999999999999999999985
No 288
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0029 Score=58.04 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+.=|.+.||+|+|||++|+++|+.++. .+..++...+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~-~f~~v~~s~l~ 219 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC-KFIRVSGAELV 219 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC-EEEEEEGGGGS
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC-CceEEEhHHhh
Confidence 344566889999999999999999999872 34455554443
No 289
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.04 E-value=0.00029 Score=63.15 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
...++ +.+|+|+|||||||++.+|.-.+
T Consensus 21 ~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 21 GFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp ECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred ecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 55667 99999999999999999998765
No 290
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.03 E-value=0.0014 Score=57.95 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE-Ee-CCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhcc
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL-VN-QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH 122 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~-l~-~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 122 (338)
...+..|.|+|| ||+|+.+.|.+.++. ++.+ ++ +- +.....+.. -..|.|- -..+.+.+. +..
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~-~~~~~vs~TT---R~~R~gE~~-G~dY~Fv----~s~eef~~~---i~~ 166 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEFPD-KFGSCVPHTT---RPKREYEID-GRDYHFV----SSREKMEKD---IQA 166 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHCTT-TEECCCCEEC---SCCCTTCCB-TTTBEEC----SCHHHHHHH---HHT
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhCcc-ceeeeeeecc---cCCCCcccc-CceeEec----CCHHHHHHH---HHC
Confidence 345678889998 799999999987642 2211 10 00 000000000 0012222 022223332 333
Q ss_pred CCccccccccCcCCc-cCCCCccccCCCcEEEEeccccccchHHH--hhcCeEEEEecCHHHHHHHHHhhCccccCCCHH
Q 019592 123 GQAVDIPNYDFKSYK-NNVFPARRVNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (338)
Q Consensus 123 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vlIldg~~~~~d~~~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 199 (338)
+..+.+..+.....- ........+..++.+|+|.-..+.. .+. ..+-+.|||.+|....++++..|. . .+
T Consensus 167 g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~-~l~~~~~~pi~IfI~pps~~~L~~L~~R~-t-----~~ 239 (295)
T 1kjw_A 167 HKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVR-RLQAAHLHPIAIFIRPRSLENVLEINKRI-T-----EE 239 (295)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHH-HHHHTTCCCEEEEECCSSHHHHHHHCTTS-C-----HH
T ss_pred CCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHH-HHHhcccCCeEEEEECCCHHHHHHHHhcC-C-----HH
Confidence 444433333221111 0000112235677888987654432 222 234589999988777777743332 1 12
Q ss_pred HHHHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHHH
Q 019592 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (338)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~~ 247 (338)
.+...+....+ ....+ ...+|++|.|+ +.+.+++.+.+.|..
T Consensus 240 ~i~~rl~~a~~-~e~~~----~~~fd~vivNd-~le~a~~~l~~ii~~ 281 (295)
T 1kjw_A 240 QARKAFDRATK-LEQEF----TECFSAIVEGD-SFEEIYHKVKRVIED 281 (295)
T ss_dssp HHHHHHHHHHH-HHHHH----GGGCSEEECCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhc----cccCeEEEECc-CHHHHHHHHHHHHHh
Confidence 22222222111 01111 35689999877 545555665555543
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.03 E-value=0.00074 Score=62.88 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=33.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFY 86 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~~~ 86 (338)
++.+|+++|++||||||++..|+..+... .+.+++.|.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 58999999999999999999999877543 46788888654
No 292
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.01 E-value=0.00062 Score=61.68 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~~~~~~l~~D~ 84 (338)
-.+++.++.|.|++|||||||+..++.... ...+.+++.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 355789999999999999999998875442 23578888874
No 293
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.98 E-value=0.00052 Score=62.23 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~ 85 (338)
+.+.+|+|+|++|||||||++.|.+.+.+ ..+.++..|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 45889999999999999999999987643 34677776643
No 294
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.98 E-value=0.00039 Score=62.38 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=27.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~ 75 (338)
..++..|.|.|+.||||||+++.|++.+...
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 3457899999999999999999999998743
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.95 E-value=0.00066 Score=57.83 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=31.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHh-C-CCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL-H-DQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l-~-~~~~~~l~~D~ 84 (338)
-.+++.+++|.|++||||||++..++... . ..++.+++.+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 45788999999999999999988776433 2 23577777653
No 296
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.95 E-value=0.00051 Score=66.12 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D 83 (338)
++..++|.||+|+||||+++.|++.+++ ....+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~ 142 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLG 142 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEec
Confidence 6789999999999999999999999864 24444443
No 297
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.94 E-value=0.00035 Score=56.69 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=21.7
Q ss_pred cccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 29 RNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.||.+..++.+.......+..-|+|+|.+|+|||||++.|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 2 GSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -------------------CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CcccccccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 355555555555545566788999999999999999999986
No 298
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.90 E-value=0.00011 Score=65.42 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
...++.+++|+|+||||||||++.|.+.+.
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 345688999999999999999999987654
No 299
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00062 Score=61.86 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=25.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL 79 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~ 79 (338)
.++..|.|.|+.||||||+++.|++.+...++.+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~ 80 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVY 80 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCCEEE
Confidence 4678999999999999999999999887555333
No 300
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.86 E-value=0.0014 Score=56.39 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
+.+.-+.|.||+|+||||+++.+++.++. .+..++..++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~-~~~~~~~~~~~ 76 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQV-PFLAMAGAEFV 76 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC-CEEEEETTTTS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC-CEEEechHHHH
Confidence 34455889999999999999999998863 45666665544
No 301
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0046 Score=57.59 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+.=|.+.||+|+|||++++++|+.++. .+..++...+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~-~fi~vs~s~L~ 280 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA-TFIRVIGSELV 280 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC-EEEEEEGGGGC
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC-CeEEEEhHHhh
Confidence 456677889999999999999999999872 34455554443
No 302
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.86 E-value=0.00028 Score=70.96 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=29.1
Q ss_pred ccccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHH
Q 019592 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCD 66 (338)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~ 66 (338)
+..-|+||++ .++.+.+++|+|.||||||||+-
T Consensus 22 r~hNLkni~v---------------~iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 22 RQHNLKDISV---------------KVPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp CSTTCCSEEE---------------EEESSSEEEEESSTTSSHHHHHT
T ss_pred cccCCCCeeE---------------EecCCCEEEEECCCCCCHHHHHH
Confidence 3344899999 99999999999999999999984
No 303
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.85 E-value=0.00055 Score=61.29 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=24.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL 79 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~ 79 (338)
.+..|.|.|+.||||||+++.|++.+...++.+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~ 35 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVY 35 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CCEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCCEEE
Confidence 568999999999999999999999887555333
No 304
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.82 E-value=0.0011 Score=62.42 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=30.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+++ +.|.||+|+||||+++.+++..+. .+..++..++.
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~~~-~f~~is~~~~~ 86 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEANV-PFFHISGSDFV 86 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGTT
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHcCC-CeeeCCHHHHH
Confidence 44445 789999999999999999998863 35566655544
No 305
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.81 E-value=0.00073 Score=59.91 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=25.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
...+..+.|.||+|+||||+++.+++.++
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45677899999999999999999999876
No 306
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.80 E-value=0.001 Score=58.76 Aligned_cols=37 Identities=19% Similarity=0.649 Sum_probs=29.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
.+.+..+.|.||+|+|||++++.+++.++ ..+..++.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~-~~~i~v~~ 69 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG-INPIMMSA 69 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT-CCCEEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeH
Confidence 35567888999999999999999999986 33555554
No 307
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.79 E-value=0.00057 Score=55.80 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=21.3
Q ss_pred ccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 30 NKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
||++.++..+.......+..-|+|+|.+|+|||||++.|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 3 SSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp ------------------CEEEEEEECTTSSHHHHHHHTSC
T ss_pred ccccccccccCcccCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 55554444444444456678899999999999999999865
No 308
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.77 E-value=0.00081 Score=62.79 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
...+.+++|+|+|||||||++++|...+.+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 456789999999999999999999998764
No 309
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.76 E-value=0.011 Score=52.84 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D 83 (338)
..-+.|.|++|+||||+++.++..++. .+..++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~~ 89 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSA-NIKTTAAP 89 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEGG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEecch
Confidence 345899999999999999999998763 35555543
No 310
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.73 E-value=0.0015 Score=59.26 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=33.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~~ 86 (338)
-++++.++.|.|++|||||||+..++..+.. ..+.+++.+...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3557899999999999999999999887542 346788776543
No 311
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.001 Score=53.92 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
..+..+.|.|++|+||||+++.+++.+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3455678999999999999999998764
No 312
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.71 E-value=0.001 Score=54.36 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=23.7
Q ss_pred CcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+..+......+...-|+|+|.+|+|||||++.|.+
T Consensus 13 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 13 GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp -------CCCSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccccccccccCcceEEEEECcCCCCHHHHHHHHhc
Confidence 33333333344567899999999999999999987
No 313
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.71 E-value=0.00038 Score=70.66 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=28.0
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHH
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCD 66 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~ 66 (338)
.-|+||++ .+++..+++|+|.|||||||||=
T Consensus 34 hNLkni~v---------------~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 34 HNLRSVDL---------------DLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp SSCCSEEE---------------EEESSSEEEEEESTTSSHHHHHT
T ss_pred cccCceee---------------eccCCCEEEEECCCCCcHHHHHH
Confidence 33889999 99999999999999999999984
No 314
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.70 E-value=0.0013 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.+.+|+|+|||||||++.+|.-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999986654
No 315
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.70 E-value=0.00035 Score=70.83 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=28.0
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHH
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVC 65 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~ 65 (338)
.-|+||++ .+++..+++|+|.|||||||||
T Consensus 12 hNLkni~~---------------~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITV---------------RIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCC---------------EEETTSEEEEEESTTSSSHHHH
T ss_pred cccCccee---------------ccCCCcEEEEECCCCCcHHHHH
Confidence 34899999 9999999999999999999998
No 316
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.70 E-value=0.00039 Score=70.40 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred ccccCccccccCCCCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHH
Q 019592 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCD 66 (338)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~ 66 (338)
.-|+||++ .+++..+++|+|.|||||||||=
T Consensus 32 hNLkni~v---------------~iP~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 32 HNLKNIDV---------------EIPRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp SSCCSEEE---------------EEETTSEEEEEESTTSSHHHHHT
T ss_pred ccCCceee---------------eccCCcEEEEECCCCCCHHHHHH
Confidence 34889999 99999999999999999999873
No 317
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.70 E-value=0.0023 Score=59.66 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=33.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC---CCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH---DQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~---~~~~~~l~~D~~~ 86 (338)
+++.+|+++|++|+||||++..|+..+. ...+.+++.|.+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4678999999999999999999997764 3467888888653
No 318
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.70 E-value=0.00033 Score=64.93 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
+.+.+..|+|+|++|||||||++.|++.
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 6778889999999999999999999875
No 319
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.69 E-value=0.00088 Score=61.53 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=25.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..+++..+||+|++|||||||.++|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 566789999999999999999999998
No 320
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0014 Score=57.27 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
..+.-+.|.||+|+||||+++.+++.++. .+..+....+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~~~~~ 88 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNA-TFIRVVGSELV 88 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEGGGGC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehHHHH
Confidence 44556899999999999999999998863 34555554443
No 321
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.68 E-value=0.0011 Score=53.94 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=26.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
+|.|+|++||||||+|..|+.. + ..+.|+.+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-PQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-SSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-CCeEEEecCC
Confidence 3789999999999999999865 3 3467777653
No 322
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.68 E-value=0.001 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
..+.|.|++|+||||+++.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999998774
No 323
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.67 E-value=0.00089 Score=53.41 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
...|+|.|++|+|||||++.|.+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999986
No 324
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.67 E-value=0.0009 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
++..|+|+|++|+|||||++.|.+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999986
No 325
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.67 E-value=0.0082 Score=55.07 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=28.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
+.-+.|.|++|+|||++++.++..++ ..+..++...+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~-~~~~~v~~~~l 184 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN-ATFFNISAASL 184 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT-CEEEEECSCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc-CcEEEeeHHHh
Confidence 46789999999999999999999876 23455555444
No 326
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.00099 Score=55.23 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=23.6
Q ss_pred CcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
|.....+...+...-|+|+|.+|+|||||++.|.+
T Consensus 14 ~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 14 LVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp --------CCSEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCCccccccceEEEEECcCCCCHHHHHHHHHh
Confidence 33334444455567899999999999999999886
No 327
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.64 E-value=0.0011 Score=56.07 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=28.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQD 83 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D 83 (338)
.+..+.|.|++|+||||+++.+++.+... .+.+++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 56788999999999999999999876532 24444443
No 328
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.63 E-value=0.0024 Score=57.93 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=32.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~ 84 (338)
.++..+|+|+|++|+||||++..|+..+.. ..+.+++.|.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 456789999999999999999999987632 4577777773
No 329
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.62 E-value=0.0011 Score=59.70 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
+.+.+|+|||||||||++.+|.-.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999987543
No 330
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.62 E-value=0.023 Score=53.09 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
.+.-+.|.||+|+|||++++.++..+....+..++..++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 446788999999999999999999883233455555443
No 331
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.60 E-value=0.00045 Score=67.43 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~ 75 (338)
....+..++|.||+|+||||+++.|++.+++.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 45567799999999999999999999998754
No 332
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.59 E-value=0.0017 Score=52.84 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..+..-|+|+|.+|+|||||++.+.+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999988876
No 333
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0014 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+...|+|+|++|+|||||++.|.+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999986
No 334
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.56 E-value=0.0013 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=20.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..+ ...|+|.|++|+|||||++.|.+
T Consensus 20 ~~~-~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 20 WNK-HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHH
T ss_pred cCC-ccEEEEECCCCCCHHHHHHHHhc
Confidence 443 34789999999999999999986
No 335
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.55 E-value=0.0015 Score=53.32 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=25.9
Q ss_pred CcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
|..+..........-|+|+|.+|+|||||++.|.+
T Consensus 9 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 9 HHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp -CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccccccccccCcceEEEEECcCCCCHHHHHHHHhc
Confidence 33333333445567899999999999999999986
No 336
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.54 E-value=0.0016 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=22.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
...+..-|+|+|.+|||||||++.|.+
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHc
Confidence 344567899999999999999999976
No 337
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.54 E-value=0.0023 Score=58.21 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.|+|+|.+|||||||++.|.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999983
No 338
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.0012 Score=53.34 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=23.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.+..+.|.|++|+||||+++.+++.+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999998874
No 339
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=54.35 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCCcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 34 GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 34 ~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+.++.+......+...-|+|+|.+|+|||||++.|.+
T Consensus 11 ~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 11 SSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp -----------CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred ccccccccccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 3455555544556678899999999999999999874
No 340
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.52 E-value=0.00085 Score=60.28 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=28.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHH-HHHHHHhCCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVC-DMIIQQLHDQR 76 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~-~~L~~~l~~~~ 76 (338)
+..++.+|.|.|+.||||||++ +.|++.++..+
T Consensus 8 ~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 8 VKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred ccCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 3456889999999999999999 99999887544
No 341
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.00042 Score=62.50 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLHD 74 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~~ 74 (338)
+.+.||+|+||||+++.+++.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999998753
No 342
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.52 E-value=0.0012 Score=58.47 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+...|+|+|++|||||||++.|.+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456899999999999999999987
No 343
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.50 E-value=0.0019 Score=57.11 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSF 85 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~--~~~l~~D~~ 85 (338)
...+.|.||+|+||||+++.|++.+...+ +..++...+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 45899999999999999999999875332 455555443
No 344
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.0036 Score=52.30 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=29.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-~~~~~l~~D 83 (338)
.....|+|+|.+||||||+++.|...+.. ..+.++..|
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 35678999999999999999999886532 235666655
No 345
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.47 E-value=0.0013 Score=61.27 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=33.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~~ 86 (338)
.++.+|+|+|++||||||++..|+..+.. ..+.+++.|.+.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 34679999999999999999999987642 347888888754
No 346
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.45 E-value=0.0034 Score=56.69 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=32.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH--hC------CCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ--LH------DQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~--l~------~~~~~~l~~D~ 84 (338)
-++.+.++.|.|++|||||||+..++.. ++ ..++.+++.+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4678999999999999999999999875 21 23467887765
No 347
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.44 E-value=0.0029 Score=59.98 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=31.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~ 85 (338)
.++.+|+|+|++||||||++..|+..+.. ..+.+++.|.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 45789999999999999999999976642 45788888764
No 348
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.43 E-value=0.0016 Score=54.04 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=24.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.++..-+.|.||+|+||||++..|++.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44555699999999999999999999875
No 349
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.42 E-value=0.0034 Score=54.53 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
...+.-+.|.||+|+||||+++.++..++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45567899999999999999999999876
No 350
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.40 E-value=0.0019 Score=50.47 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.-|.|.|++|+|||++|+.++....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 34478999999999999999998653
No 351
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.38 E-value=0.0033 Score=55.77 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
.+.-+.|+|+||+||||++..|.+ .+..++..|.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~----~g~~lv~dD~ 176 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK----RGHRLVADDN 176 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH----TTCEEEESSE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh----cCCceecCCe
Confidence 578899999999999999999988 3566665553
No 352
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.37 E-value=0.002 Score=51.55 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..++...|+|+|.+|||||||++.|.+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345678899999999999999999975
No 353
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.36 E-value=0.0025 Score=58.09 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHDQ 75 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~~ 75 (338)
.+.|.|++|+||||+++.+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999988654
No 354
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.0016 Score=58.81 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 019592 51 IGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l 72 (338)
+.|.||+|+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999954
No 355
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.35 E-value=0.0026 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+..-|+|+|.+|||||||++.|.+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999987
No 356
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.33 E-value=0.0013 Score=54.30 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=21.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..+. .-|+|.|++|+|||||++.|.+
T Consensus 22 ~~~~-~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 22 YKKT-GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TTCC-EEEEEEEETTSSHHHHHHHHSC
T ss_pred cCCC-cEEEEECCCCCCHHHHHHHHhc
Confidence 5444 4689999999999999999864
No 357
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.33 E-value=0.0028 Score=55.91 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=29.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~ 85 (338)
+.-+.|.|++|+||||+++.+++.++. .+..++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~-~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEcchhc
Confidence 446779999999999999999999863 4566665443
No 358
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0019 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=23.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+.....-|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 445567899999999999999999987
No 359
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.32 E-value=0.0024 Score=53.66 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+..+.|.|++|+||||+++.+++.+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34889999999999999999998775
No 360
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.31 E-value=0.0023 Score=53.26 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=23.2
Q ss_pred CcchhhhcCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
++.+......+...-|+|+|.+|+|||||++.|.+
T Consensus 13 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 13 GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp --------CCSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred CcCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhc
Confidence 44444433445567899999999999999999875
No 361
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0048 Score=57.37 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+.=|.+.||+|+|||++++++|+.++. .+..++..++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~-~~~~v~~s~l~ 252 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA-NFIFSPASGIV 252 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGGTC
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehhhhc
Confidence 455677889999999999999999999873 35555555544
No 362
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0049 Score=57.19 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+.=|.+.||+|+|||++++++|+.++ ..+..++...+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~-~~~~~v~~~~l~ 243 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK-AAFIRVNGSEFV 243 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT-CEEEEEEGGGTC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC-CCeEEEecchhh
Confidence 44566689999999999999999999987 235555554444
No 363
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.29 E-value=0.0015 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.-|+|+|++|+|||||++.|.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999976
No 364
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.28 E-value=0.0035 Score=49.69 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.++..-|+|+|.+|+|||||++.|.+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 35678899999999999999999976
No 365
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0023 Score=52.29 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....-|+|+|.+|+|||||++.|.+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhc
Confidence 34456799999999999999999864
No 366
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.26 E-value=0.0011 Score=63.33 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=26.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
...++ +.+|+|+|||||||++.+|.-.++
T Consensus 57 ~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp ECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred ecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 77777 999999999999999999988765
No 367
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=96.26 E-value=0.053 Score=47.04 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=33.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
.+.+|.+-|.-||||+++.+.|.+.++|.++.+...
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~ 109 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF 109 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC
Confidence 589999999999999999999999999988877754
No 368
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.25 E-value=0.0032 Score=51.87 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....-|+|+|.+|+|||||++.|.+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999987
No 369
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.24 E-value=0.0024 Score=64.44 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
...+.-|+|.|++||||||+++.|++.++. .+..++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~-~~i~v~~ 271 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA-FFFLING 271 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC-EEEEEEH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC-cEEEEEc
Confidence 466778999999999999999999998763 2344443
No 370
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0029 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.....|+|+|++|||||||++.|.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999873
No 371
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.23 E-value=0.0027 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+..-|+|+|.+|||||||++.|.+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999986
No 372
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=96.22 E-value=0.016 Score=54.72 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
.+.+.+|.|-|.-||||+|.++.|.+.++|.++.+...
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~ 77 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSF 77 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEe
Confidence 46789999999999999999999999999988877654
No 373
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0052 Score=57.09 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=31.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+.=|.+.||+|+|||++|+++|+.++. .+..++..++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~-~f~~v~~s~l~ 252 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA-TFLKLAAPQLV 252 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGGGC
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC-CEEEEehhhhh
Confidence 455677899999999999999999999872 34555554444
No 374
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.22 E-value=0.02 Score=56.95 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=79.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE-EeCCCCCCCCCHHHHHHccccCCCCcccccHHHHHHHHHHhccCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL-VNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~-l~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 124 (338)
..+..|.|+||+ |+|+.+.|...++. ++.+ ++.- -+.....+. .-..|.|-. ..+.+.+ .+..+.
T Consensus 529 ~~~r~vvl~GP~---K~tl~~~L~~~~~~-~~~~~vs~T--TR~~r~gE~-~G~dY~Fv~----s~~~f~~---~i~~~~ 594 (721)
T 2xkx_A 529 HYARPIIILGPT---KDRANDDLLSEFPD-KFGSCVPHT--TRPKREYEI-DGRDYHFVS----SREKMEK---DIRAHK 594 (721)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHhCcc-ceeeccccc--ccCCCCCcc-CCceeEEec----CHHHHHH---HHhcCC
Confidence 456788999993 99999999887642 1211 1100 000000000 001222320 2222222 233344
Q ss_pred ccccccccCcCCc-cCCCCccccCCCcEEEEeccccccchHHH--hhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHH
Q 019592 125 AVDIPNYDFKSYK-NNVFPARRVNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATV 201 (338)
Q Consensus 125 ~~~~~~~~~~~~~-~~~~~~~~~~~~~vlIldg~~~~~d~~~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~ 201 (338)
.+.+-.+....+- ........+...+.+|+|.-..+. ..+. ..+-+.|||..+....++++..|. . .+.+
T Consensus 595 flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~-~~l~~~~~~p~~ifi~pps~~~L~~l~~R~-t-----~~~~ 667 (721)
T 2xkx_A 595 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAV-RRLQAAHLHPIAIFIRPRSLENVLEINKRI-T-----EEQA 667 (721)
T ss_pred ceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHH-HHHHhcccCCEEEEEeCCcHHHHHHHhccC-C-----HHHH
Confidence 4433333222111 101111234567788888744332 1122 344589999988877777744443 1 1122
Q ss_pred HHHHhhcCcchhhhhccCcCccccEEecCCCCcHHHHHHHHHHHH
Q 019592 202 LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (338)
Q Consensus 202 ~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~~~~i~ 246 (338)
...+....+ ... .+...+|++|.|+ +.+.+++++.+.|.
T Consensus 668 ~~rl~~a~~-~e~----~~~~~fd~vi~Nd-~l~~a~~~l~~~i~ 706 (721)
T 2xkx_A 668 RKAFDRATK-LEQ----EFTECFSAIVEGD-SFEEIYHKVKRVIE 706 (721)
T ss_pred HHHHHHHHH-HHH----hccccCcEEEECc-CHHHHHHHHHHHHH
Confidence 222222110 001 1145789999887 44445555555544
No 375
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.21 E-value=0.0026 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.....|+|+|++|+|||||++.|.+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34578999999999999999999863
No 376
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.21 E-value=0.0041 Score=50.76 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.+...-|+|+|++|+|||||++.|.+.
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999874
No 377
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.20 E-value=0.0034 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
...-|+|+|++|||||||++.|.+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999986
No 378
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.19 E-value=0.0036 Score=49.06 Aligned_cols=22 Identities=14% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.-|+|.|++|+|||||++.|.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999987
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.19 E-value=0.0028 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|++|||||||++.|.+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999999976
No 380
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.18 E-value=0.0027 Score=54.46 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....|+|+|.+|+|||||++.|.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 4567899999999999999999976
No 381
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.17 E-value=0.003 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
+.++.|+|+.||||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999986555443
No 382
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.17 E-value=0.0072 Score=51.92 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC-CCCEEEEeCCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH-DQRVVLVNQDS 84 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~-~~~~~~l~~D~ 84 (338)
.+..++++.|..||||||++..|+..+. ...+.+++.|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5678999999999999999999997664 13467887774
No 383
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.17 E-value=0.0035 Score=50.97 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|.+|+|||||++.|.+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 4567899999999999999999886
No 384
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.16 E-value=0.0028 Score=56.60 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=28.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQD 83 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D 83 (338)
.+..+.|.||+|+||||+++.+++.+.. ..+.+++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3457889999999999999999987732 235555543
No 385
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.16 E-value=0.045 Score=50.17 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=53.2
Q ss_pred cCCCcEEEEeccccccchHHH--hhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCcc
Q 019592 146 VNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~ 223 (338)
+..++.+|+|--..+. ..++ ...-+.|||..|.-..++++.+|...+.............+.+ .+| ...
T Consensus 286 ~~~Gk~~iLdId~qg~-~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e----~~~----~~~ 356 (391)
T 3tsz_A 286 IDQDKHALLDVTPNAV-DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLR----KNN----HHL 356 (391)
T ss_dssp HTTTCEEEECCCHHHH-HHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHH----HHH----GGG
T ss_pred HHcCCEEEEEeCHHHH-HHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----Hhc----ccc
Confidence 4567888998755442 2222 2334899999998888887655532222223333333221111 111 467
Q ss_pred ccEEecCCCCcHHHHHHHHHHHHHH
Q 019592 224 ADIIIPRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 224 aD~iI~~~~~~~~~~~~~~~~i~~~ 248 (338)
.|++|.|+.....+++++.+.|.+.
T Consensus 357 fd~vivNd~l~~~a~~~l~~ii~~~ 381 (391)
T 3tsz_A 357 FTTTINLNSMNDGWYGALKEAIQQQ 381 (391)
T ss_dssp CSEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CcEEEECCCcHHHHHHHHHHHHHHh
Confidence 8999988833325666666666544
No 386
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.002 Score=52.62 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.+...-|+|+|.+|+|||||++.|.+.
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcC
Confidence 445678999999999999999999874
No 387
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.15 E-value=0.0038 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..-|+|.|++|||||||++.|.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999886
No 388
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.14 E-value=0.003 Score=55.77 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.+.-+.|.||+|+||||+++.+++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999998874
No 389
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.14 E-value=0.0038 Score=50.03 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|++|||||||++.|.+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999986
No 390
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.14 E-value=0.0034 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.-|++.|.+|||||||++.|.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999986
No 391
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.13 E-value=0.0032 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 019592 51 IGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l 72 (338)
+.|.|++|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999875
No 392
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0042 Score=50.72 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....-|+|+|.+|||||||++.|.+
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 34567899999999999999999986
No 393
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.10 E-value=0.0026 Score=57.75 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
..+..+.|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998773
No 394
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.09 E-value=0.004 Score=50.11 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+..-|+|+|.+|||||||++.|.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Confidence 3457899999999999999999986
No 395
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.08 E-value=0.0018 Score=56.13 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.|.||+|+||||+++.+++.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 77999999999999999999876
No 396
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.08 E-value=0.0036 Score=52.77 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.++.++.++|++||||||++-.++..+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999888877663
No 397
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.08 E-value=0.0039 Score=49.76 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....-|+|+|.+|+|||||++.|.+
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHc
Confidence 34567899999999999999999987
No 398
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.08 E-value=0.0053 Score=56.03 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D 83 (338)
.+.-+.|.||+|+||||+++.|++.++ ..+..++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~ 106 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD-IPIAISDAT 106 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC-CCEEEecch
Confidence 345688999999999999999999886 235555543
No 399
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.07 E-value=0.015 Score=54.39 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=55.5
Q ss_pred cCCCcEEEEeccccccchHHH--hhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCcc
Q 019592 146 VNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~ 223 (338)
+..++.+|+|--..+. ..++ ...-+.|||..|.-..++++.+|.................+.. .+| ...
T Consensus 278 l~~Gk~~iLdId~qg~-~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e----~~~----~~~ 348 (468)
T 3shw_A 278 IDQDKHALLDVTPNAV-DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLR----KNN----HHL 348 (468)
T ss_dssp HTTTCEEEECCCHHHH-HHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHH----HHH----GGG
T ss_pred HHCCCeEEEEeCHHHH-HHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHH----Hhh----hcc
Confidence 4567888998755442 2222 2334899999998888887555532222233333333221111 111 467
Q ss_pred ccEEecCCCCcHHHHHHHHHHHHHHhccc
Q 019592 224 ADIIIPRGGDNHVAIDLIVQHIRTKLGQH 252 (338)
Q Consensus 224 aD~iI~~~~~~~~~~~~~~~~i~~~l~~~ 252 (338)
.|+||.|+...+.+++++.+.|...-.+-
T Consensus 349 fD~vIvNddl~d~a~~~L~~ii~~~~~~~ 377 (468)
T 3shw_A 349 FTTTINLNSMNDGWYGALKEAIQQQQNQL 377 (468)
T ss_dssp CSEEEECBTTBCHHHHHHHHHHHHHHTSC
T ss_pred CCEEEECCCcHHHHHHHHHHHHHHhcCCC
Confidence 89999887332367777777776554333
No 400
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.06 E-value=0.0035 Score=56.94 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=26.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
.+.-+.|.||+|+||||+|+.|++.++. .+..++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~-~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDV-PFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC-CEEEech
Confidence 3456889999999999999999998862 2444433
No 401
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.06 E-value=0.0044 Score=48.81 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..-|+|+|.+|||||||++.|.+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999999986
No 402
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.05 E-value=0.0052 Score=57.24 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=26.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
.-|.+.||+|+||||+++.|++.++. .+..++.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~ 83 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA 83 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC-Cceeecc
Confidence 34889999999999999999999873 3444544
No 403
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.05 E-value=0.0044 Score=50.86 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.++..-|+|+|.+|+|||||++.|.+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 45578899999999999999999986
No 404
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.05 E-value=0.0042 Score=52.06 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=28.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCC
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l~~-~~~~~l~~D 83 (338)
.+...|+|+|.+|||||||+..|...+.. ..+..+..|
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 35688999999999999999999876432 235555544
No 405
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.04 E-value=0.0033 Score=54.66 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
...|+|+|++|||||||.+.|.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999874
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.04 E-value=0.0052 Score=49.45 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..+..-|+|+|.+|+|||||++.|.+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 34467899999999999999999986
No 407
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.03 E-value=0.0041 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+...-|+|+|.+|+|||||++.|.+
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Confidence 4467899999999999999999986
No 408
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.03 E-value=0.004 Score=55.10 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=27.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
.+.-+.|+|+||+||||++..|.. .|..++..|.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~----~G~~lv~DD~ 179 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN----KNHLFVGDDA 179 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT----TTCEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH----cCCEEEeCCE
Confidence 577899999999999999998876 4566666654
No 409
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.02 E-value=0.004 Score=51.22 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+..-|+|+|.+|+|||||++.|.+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHh
Confidence 4567899999999999999999987
No 410
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.02 E-value=0.0046 Score=56.10 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.-+.|.|++|+||||+++.+++.++ ..+..++..++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~-~~~~~i~~~~l~ 154 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG-ATFFSISASSLT 154 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT-CEEEEEEGGGGC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC-CeEEEEehHHhh
Confidence 455788999999999999999999876 234555554443
No 411
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.0039 Score=49.88 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....-|+|+|.+|||||||++.|.+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999999864
No 412
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.98 E-value=0.0037 Score=57.03 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+.+.+|+|+|||||||+..+|.=
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 413
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.98 E-value=0.005 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..-|+|+|.+|||||||.+.|.+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999986
No 414
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.98 E-value=0.0044 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|.+|+|||||++.|.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc
Confidence 3456799999999999999999986
No 415
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.98 E-value=0.0044 Score=55.44 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--------CCCEEEEeCCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--------DQRVVLVNQDS 84 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--------~~~~~~l~~D~ 84 (338)
-.+.+.++.|.|++|||||||+..++.... ..++.+++.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 356788999999999999999999987542 23467777765
No 416
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.97 E-value=0.0049 Score=50.71 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|.+|+|||||++.|.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc
Confidence 4567899999999999999999986
No 417
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.96 E-value=0.0048 Score=50.24 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|++|+|||||++.|.+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3456799999999999999999986
No 418
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.96 E-value=0.0068 Score=49.81 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=24.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
..++.++.++|++||||||.+-.++..+
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3558899999999999999998888776
No 419
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0043 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..-|+|+|.+|||||||++.|.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999975
No 420
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.95 E-value=0.0047 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..-|+|+|++|+|||||++.|.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45699999999999999999986
No 421
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.94 E-value=0.0032 Score=59.19 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=33.2
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCC
Q 019592 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQD 83 (338)
Q Consensus 43 ~~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~---~~~~~l~~D 83 (338)
.-..++.++.|+|++|+|||||+..++..... ..+.+++.+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 36789999999999999999999999876532 247777765
No 422
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.93 E-value=0.0044 Score=49.02 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+..-|+|+|++|+|||||++.|.+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 356799999999999999999986
No 423
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.93 E-value=0.0056 Score=48.91 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+..-|+|+|.+|+|||||++.|.+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 3457799999999999999999975
No 424
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.92 E-value=0.0047 Score=51.17 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=22.1
Q ss_pred CCcchhhhcC-CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 35 QPTISAAENL-HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 35 ~~~~~~~~~~-~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+|+.+..|.. .+...-|+|+|.+|+|||||++.|.+
T Consensus 14 ~~~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 14 LVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp -------------CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCCCCCcccceeeEEEEECCCCCCHHHHHHHHhc
Confidence 3444443332 34567899999999999999999987
No 425
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.91 E-value=0.0031 Score=51.74 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred hhcCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 41 ~~~~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....++..-|+|+|.+|+|||||++.+.+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHh
Confidence 333455667899999999999999997765
No 426
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.91 E-value=0.0052 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|.+|+|||||++.|.+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999986
No 427
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.91 E-value=0.0044 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....|+|+|++|||||||++.|.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999975
No 428
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.90 E-value=0.0049 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+..-|+|+|++|||||||++.|.+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 356799999999999999999986
No 429
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.90 E-value=0.0043 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
......|+|+|.+|||||||++.|.+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhC
Confidence 34567899999999999999999975
No 430
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.89 E-value=0.0053 Score=54.78 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=27.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
.+.-+.|.||+|+|||++++.+++.++. .+..++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~-~~~~v~~ 84 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANS-TFFSVSS 84 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTC-EEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCC-CEEEEch
Confidence 3456899999999999999999998762 2444443
No 431
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0048 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.-|+|+|++|||||||++.|.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999976
No 432
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.88 E-value=0.0059 Score=48.55 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
...-|+|+|++|+|||||++.|.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 356799999999999999999875
No 433
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.84 E-value=0.013 Score=58.69 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=25.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
...+.=|.+.||+|+|||++++.+++.++
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567789999999999999999999876
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.84 E-value=0.0053 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+...-|+|+|++|||||||++.|.+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999999976
No 435
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.83 E-value=0.0056 Score=50.96 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.....|+|+|++|+|||||++.|.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999874
No 436
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.82 E-value=0.0047 Score=57.74 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
+.-+.|.||+|+||||+++.+++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999876
No 437
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.81 E-value=0.0046 Score=56.80 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQD 83 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D 83 (338)
..-++|+|++||||||+++.+...+... .+.+++.+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457899999999999999998765432 34555443
No 438
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.80 E-value=0.0048 Score=55.94 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ 82 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~ 82 (338)
.+..+.|.||+|+||||+++.+++.+... .+..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 34689999999999999999999988732 2344443
No 439
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.80 E-value=0.0051 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..-|+|+|+.|+|||||++.|.+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999975
No 440
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.79 E-value=0.0058 Score=52.76 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~--~~~~l~~D~ 84 (338)
+.-+.|.|++|+|||++++.++...... .+..++...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 3457799999999999999999876532 245555443
No 441
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0065 Score=48.62 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+...-|+|+|.+|+|||||++.|.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4456799999999999999999986
No 442
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.78 E-value=0.0053 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q 019592 51 IGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 51 I~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.|.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 443
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.77 E-value=0.0048 Score=50.09 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....|+|+|.+|||||||++.|.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999999876
No 444
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.77 E-value=0.0061 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|++|+|||||++.|.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhc
Confidence 4567799999999999999999987
No 445
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.77 E-value=0.0063 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....|+|+|++|+|||||++.|.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4578899999999999999999865
No 446
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0078 Score=55.55 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~~~ 86 (338)
.+.+.=|.+.||+|+|||++|+++|+.++. .+..++..++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~-~fi~v~~s~l~ 253 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA-TFLRIVGSELI 253 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTC-EEEEEESGGGC
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCC-CEEEEEHHHhh
Confidence 445667899999999999999999999872 34555554443
No 447
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.75 E-value=0.0062 Score=48.79 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
...-|+|+|.+|+|||||++.|.+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999976
No 448
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.75 E-value=0.0073 Score=53.64 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~D~ 84 (338)
.+..+.|.|++|+||||+++.++..++ ..+..++...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~ 73 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG-VNLRVTSGPA 73 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT-CCEEEECTTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeccc
Confidence 345688999999999999999999886 3355555544
No 449
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.75 E-value=0.0057 Score=55.44 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.-|.|.||+|+|||++++.+++.++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34578899999999999999999886
No 450
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.74 E-value=0.0055 Score=50.84 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+...|+|+|.+|+|||||++.|.+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456799999999999999999987
No 451
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.74 E-value=0.006 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+..-|+|.|.+|+|||||++.|.+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999999986
No 452
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.73 E-value=0.0063 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+..-|+|+|.+|+|||||++.+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4566799999999999999999986
No 453
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.72 E-value=0.0051 Score=55.88 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
..+..+.|.||+|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999877
No 454
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.72 E-value=0.0088 Score=54.19 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~--~~~~~~l~~D~~ 85 (338)
.+++.++.|.|++|||||||+..++.... ...+.+++.+.-
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 55788999999999999999998886542 235788888643
No 455
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.70 E-value=0.0063 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.++++.|+|++|||||+++..+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHH
Confidence 356899999999999999987643
No 456
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.70 E-value=0.0068 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+..-|+|.|.+|+|||||++.|.+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457799999999999999999987
No 457
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.68 E-value=0.0046 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
++..-|+|+|++|||||||++.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999988763
No 458
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.68 E-value=0.0065 Score=47.78 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 019592 50 VIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~ 70 (338)
-|+|.|.+|+|||||++.|.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999976
No 459
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.68 E-value=0.0071 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
++..-|+|+|..|+|||||++.|.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4467899999999999999999986
No 460
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.67 E-value=0.0069 Score=49.38 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=21.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.......|+|+|.+|+|||||++.|.+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345677899999999999999999864
No 461
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.66 E-value=0.0086 Score=49.10 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
...-|+|+|.+|||||||++.|.+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999986
No 462
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.66 E-value=0.0055 Score=54.38 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
..+++-.|+|+|.+|||||||++.|.+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 345677999999999999999999976
No 463
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.65 E-value=0.0081 Score=50.11 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=24.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
..++.+..++|+.||||||.+-.++..+.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~ 53 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQ 53 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45689999999999999999988876654
No 464
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.65 E-value=0.0063 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.-|+|.|++|+|||||++.|.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999864
No 465
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.64 E-value=0.0054 Score=48.38 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.-|+|+|.+|+|||||++.|.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4589999999999999998853
No 466
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.63 E-value=0.0061 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
...|+|+|.+|+|||||.+.|.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46799999999999999999986
No 467
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0091 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+..-|+|+|.+|+|||||++.|.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999999999987
No 468
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.61 E-value=0.0061 Score=50.01 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999998854
No 469
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.60 E-value=0.0061 Score=48.92 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+..-|+|+|.+|+|||||++.|.+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999999985
No 470
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.60 E-value=0.01 Score=56.73 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.+..+.|.||+|+||||+++.+++.++
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346889999999999999999999885
No 471
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.58 E-value=0.0066 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
...-|+|+|.+|+|||||++.+.+.+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999999888754
No 472
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.58 E-value=0.0077 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+..-|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc
Confidence 4467899999999999999999987
No 473
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=95.57 E-value=0.14 Score=48.39 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=33.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~~ 82 (338)
.+.+.+|.+-|.-||||+|.++.|.+.++|.++.+...
T Consensus 297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~ 334 (500)
T 3czp_A 297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPI 334 (500)
T ss_dssp GGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEEC
T ss_pred CCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEe
Confidence 35789999999999999999999999999888776654
No 474
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.56 E-value=0.0072 Score=54.96 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
..+..+.|.||+|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 475
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.54 E-value=0.0074 Score=56.50 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
.-+.|.||+|+||||+++.|++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4688999999999999999999876
No 476
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.51 E-value=0.0092 Score=48.13 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
++..-|+|.|++|+|||||++.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4678899999999999999999875
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.49 E-value=0.01 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|.+|+|||||++.|..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999986
No 478
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0079 Score=49.00 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
++..-|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc
Confidence 4457899999999999999999986
No 479
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.48 E-value=0.0088 Score=48.06 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+..-|+|+|.+|+|||||++.|.+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999999976
No 480
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.47 E-value=0.0086 Score=53.16 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~ 73 (338)
+.-+.|.|++|+|||+++++++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999998654
No 481
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.47 E-value=0.0085 Score=49.34 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+...-|+|+|.+|+|||||++.|.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4467899999999999999999986
No 482
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=95.46 E-value=0.23 Score=43.70 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=53.2
Q ss_pred cCCCcEEEEeccccccchHHH--hhcCeEEEEecCHHHHHHHHHhhCccccCCCHHHHHHHHhhcCcchhhhhccCcCcc
Q 019592 146 VNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (338)
Q Consensus 146 ~~~~~vlIldg~~~~~d~~~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~ 223 (338)
+..++.+|+|--..+. ..++ ...-+.|||..|.-..++++..|...+...........-.+.. ..| ...
T Consensus 195 l~~Gk~~ILDId~QGa-~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE----~~~----~~~ 265 (308)
T 3kfv_A 195 AEKDKHALLDVTPSAI-ERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLR----KHS----SHL 265 (308)
T ss_dssp HHTTCEEEECCCHHHH-HHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHH----HHH----GGG
T ss_pred HHCCCcEEEEECHHHH-HHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----Hhh----hcc
Confidence 3467788888755443 2222 2334899999988888887666532222223333322211110 111 367
Q ss_pred ccEEe-cCCCCcHHHHHHHHHHHHHH
Q 019592 224 ADIII-PRGGDNHVAIDLIVQHIRTK 248 (338)
Q Consensus 224 aD~iI-~~~~~~~~~~~~~~~~i~~~ 248 (338)
.|+|| .|+ +.+.+++++.+.|.+.
T Consensus 266 FD~vI~VND-dle~A~~~L~~iI~~~ 290 (308)
T 3kfv_A 266 FTATIPLNG-TSDTWYQELKAIIREQ 290 (308)
T ss_dssp CSEEEEECS-SSTHHHHHHHHHHHHH
T ss_pred CcEEEEcCC-CHHHHHHHHHHHHHHh
Confidence 89999 677 5556777777766654
No 483
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0097 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
++..-|+|+|.+|+|||||++.|.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678899999999999999999985
No 484
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.45 E-value=0.0084 Score=50.42 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....|+|+|.+|+|||||++.|.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999999875
No 485
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.43 E-value=0.0086 Score=55.94 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=22.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
....|+|+|++|||||||++.|.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999875
No 486
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.42 E-value=0.0057 Score=49.45 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 019592 50 VIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~ 70 (338)
-|+|+|.+|+|||||++.|.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 487
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.42 E-value=0.009 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+...-|+|+|..|+|||||++.|.+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 4457899999999999999999976
No 488
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.42 E-value=0.0065 Score=51.60 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=28.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH--hC-CCCEEEEeCC
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ--LH-DQRVVLVNQD 83 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~--l~-~~~~~~l~~D 83 (338)
.+++.++.|+|++|+|||||+..++.. .. ...+.+++.+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 467889999999999999999876532 22 2346666655
No 489
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.40 E-value=0.0038 Score=48.61 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQL 72 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l 72 (338)
-|.|.|++|+|||++++.++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 37799999999999999998754
No 490
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.38 E-value=0.0065 Score=55.26 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 019592 49 FVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 49 ~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.+|+|+|++|||||||++.|.+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHC
Confidence 3599999999999999999986
No 491
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.38 E-value=0.0088 Score=53.26 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=31.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCC
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQD 83 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D 83 (338)
-..++.++.|+|++|+|||||+..++...-. ..+.+++.+
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 6788999999999999999999998854321 235666655
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.36 E-value=0.085 Score=52.74 Aligned_cols=37 Identities=11% Similarity=0.304 Sum_probs=29.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 019592 50 VIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (338)
Q Consensus 50 iI~I~G~sGSGKTTl~~~L~~~l~~--~~~~~l~~D~~~ 86 (338)
.+.|.||+|+|||++++.|+..+.. ..+..+++..+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 6899999999999999999998732 346777776554
No 493
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.35 E-value=0.0076 Score=53.86 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=25.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 019592 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (338)
Q Consensus 48 ~~iI~I~G~sGSGKTTl~~~L~~~l~~~~~~~l~ 81 (338)
+.-+.|.|++|+|||++++.+++.++. .+..+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~-~~~~i~ 78 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDL-DFHRIQ 78 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC-CeEEEe
Confidence 346889999999999999999998863 344343
No 494
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.35 E-value=0.0091 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+...-|+|+|.+|+|||||++.|.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 4457799999999999999999875
No 495
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.34 E-value=0.0082 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
.+++.++.|.|++|+|||||+..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445678899999999999999999875
No 496
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.33 E-value=0.01 Score=55.75 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS 84 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~~l~~~-~~~~l~~D~ 84 (338)
.+.-+.+.||+|+|||++++.+++.++.. .+..++...
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~ 100 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHH
Confidence 34568899999999999999999998631 244444433
No 497
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.32 E-value=0.0077 Score=53.71 Aligned_cols=28 Identities=25% Similarity=0.118 Sum_probs=24.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 019592 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (338)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTl~~~L~~~ 71 (338)
-.+.+.++.|.|++|||||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999864
No 498
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.008 Score=48.76 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 47 ~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
+..-|+|+|.+|+|||||++.|.+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 356899999999999999999976
No 499
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.32 E-value=0.012 Score=48.48 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
....-|+|+|++|+|||||++.|.+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999986
No 500
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.29 E-value=0.013 Score=48.85 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 019592 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (338)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTl~~~L~~ 70 (338)
.....-|+|+|.+|+|||||++.|.+
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhc
Confidence 34567899999999999999999986
Done!