Query 019594
Match_columns 338
No_of_seqs 165 out of 1291
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09546 zntB zinc transporter 100.0 4.2E-46 9E-51 358.7 33.8 243 11-283 78-323 (324)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 2.7E-45 5.9E-50 352.8 33.0 244 12-283 75-321 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 4.3E-43 9.4E-48 336.3 32.6 246 11-284 69-318 (318)
4 PRK11085 magnesium/nickel/coba 100.0 5.2E-39 1.1E-43 307.1 33.4 246 12-283 68-315 (316)
5 PF01544 CorA: CorA-like Mg2+ 100.0 2.5E-37 5.4E-42 290.8 29.3 234 11-268 45-284 (292)
6 KOG2662 Magnesium transporters 99.2 1.7E-09 3.7E-14 104.7 21.2 144 134-283 218-411 (414)
7 COG0598 CorA Mg2+ and Co2+ tra 95.7 1.9 4.1E-05 41.7 19.6 163 103-280 148-315 (322)
8 TIGR00383 corA magnesium Mg(2+ 94.6 2.2 4.7E-05 40.8 16.3 160 103-277 143-308 (318)
9 PF11902 DUF3422: Protein of u 93.3 10 0.00022 38.2 20.6 174 96-281 211-418 (420)
10 PF07332 DUF1469: Protein of u 92.4 1.6 3.4E-05 35.7 9.8 28 253-280 72-99 (121)
11 PRK09546 zntB zinc transporter 91.8 13 0.00028 35.8 20.4 140 103-254 151-293 (324)
12 PF01544 CorA: CorA-like Mg2+ 91.8 3.4 7.3E-05 38.4 12.5 168 103-282 119-292 (292)
13 PF04156 IncA: IncA protein; 91.7 0.96 2.1E-05 40.1 8.2 63 220-286 5-68 (191)
14 PF06570 DUF1129: Protein of u 91.0 1.4 3E-05 39.8 8.7 52 137-188 9-65 (206)
15 PRK11085 magnesium/nickel/coba 89.6 21 0.00045 34.6 20.4 167 103-280 140-309 (316)
16 PF03904 DUF334: Domain of unk 88.5 20 0.00043 33.0 15.3 7 241-247 175-181 (230)
17 PF11593 Med3: Mediator comple 84.4 8.6 0.00019 37.7 9.9 88 109-203 8-95 (379)
18 PF06210 DUF1003: Protein of u 83.8 12 0.00026 30.5 9.1 72 225-299 4-75 (108)
19 PF10267 Tmemb_cc2: Predicted 82.6 56 0.0012 32.7 20.0 35 85-121 211-245 (395)
20 COG3462 Predicted membrane pro 80.6 6.4 0.00014 32.0 6.2 57 213-272 3-65 (117)
21 PF04011 LemA: LemA family; I 77.3 51 0.0011 29.1 14.7 55 181-250 119-173 (186)
22 PRK15348 type III secretion sy 77.2 2.2 4.8E-05 39.9 3.1 67 215-281 177-248 (249)
23 COG5487 Small integral membran 75.3 5.9 0.00013 27.7 4.0 24 225-250 4-27 (54)
24 COG4420 Predicted membrane pro 75.2 20 0.00043 32.0 8.3 95 219-316 52-146 (191)
25 PRK13682 hypothetical protein; 73.8 3.3 7E-05 29.1 2.4 24 225-250 4-27 (51)
26 PF10112 Halogen_Hydrol: 5-bro 73.1 26 0.00056 31.2 8.9 18 224-241 12-29 (199)
27 PF06305 DUF1049: Protein of u 71.3 8.7 0.00019 27.9 4.5 21 254-274 18-38 (68)
28 PF06609 TRI12: Fungal trichot 71.0 5.7 0.00012 41.8 4.6 39 222-263 168-206 (599)
29 PF10883 DUF2681: Protein of u 69.9 19 0.00041 28.2 6.2 64 264-327 9-72 (87)
30 COG1955 FlaJ Archaeal flagella 67.8 1.6E+02 0.0034 30.6 14.9 16 279-294 229-244 (527)
31 TIGR03185 DNA_S_dndD DNA sulfu 67.1 1.8E+02 0.0039 30.9 16.9 115 104-222 400-518 (650)
32 PF13273 DUF4064: Protein of u 66.7 10 0.00022 30.0 4.3 24 220-243 6-29 (100)
33 PF15086 UPF0542: Uncharacteri 66.4 14 0.0003 27.8 4.5 32 252-285 18-49 (74)
34 TIGR03647 Na_symport_sm probab 65.8 48 0.001 25.3 7.6 22 246-268 35-56 (77)
35 PF13994 PgaD: PgaD-like prote 64.8 21 0.00045 30.2 6.1 85 228-316 31-123 (138)
36 PRK13455 F0F1 ATP synthase sub 63.3 49 0.0011 29.1 8.5 26 219-250 1-26 (184)
37 PF01277 Oleosin: Oleosin; In 60.7 52 0.0011 27.2 7.4 67 221-301 39-105 (118)
38 PF14316 DUF4381: Domain of un 60.7 14 0.0003 31.4 4.3 30 254-283 21-50 (146)
39 COG1459 PulF Type II secretory 60.1 1.9E+02 0.0042 28.9 16.1 23 227-250 181-203 (397)
40 TIGR01598 holin_phiLC3 holin, 60.0 5.1 0.00011 30.7 1.3 29 216-244 8-36 (78)
41 PF05817 Ribophorin_II: Oligos 59.0 20 0.00044 38.1 6.0 36 228-264 557-595 (636)
42 PF08372 PRT_C: Plant phosphor 58.9 38 0.00082 29.5 6.7 34 174-207 56-89 (156)
43 TIGR03142 cytochro_ccmI cytoch 58.0 35 0.00076 27.8 6.1 58 256-315 2-67 (117)
44 PF13937 DUF4212: Domain of un 57.4 87 0.0019 24.1 8.1 16 252-267 44-59 (81)
45 KOG2775 Metallopeptidase [Gene 56.6 15 0.00034 35.3 4.2 43 281-324 67-109 (397)
46 PF02687 FtsX: FtsX-like perme 55.8 39 0.00085 26.3 6.0 32 252-283 90-121 (121)
47 COG4327 Predicted membrane pro 54.9 22 0.00047 28.2 4.0 30 231-261 30-59 (101)
48 PF05992 SbmA_BacA: SbmA/BacA- 53.9 1.2E+02 0.0026 29.4 9.8 28 228-258 139-166 (315)
49 PF10805 DUF2730: Protein of u 53.3 1.2E+02 0.0025 24.5 8.3 55 105-163 45-99 (106)
50 PF05478 Prominin: Prominin; 52.5 3.5E+02 0.0076 29.7 18.8 183 66-280 204-435 (806)
51 COG4949 Uncharacterized membra 52.3 2.3E+02 0.0051 27.5 13.8 68 211-284 353-420 (424)
52 KOG2447 Oligosaccharyltransfer 51.8 39 0.00085 32.0 5.9 48 226-274 205-255 (287)
53 PRK11677 hypothetical protein; 50.9 56 0.0012 27.7 6.3 40 257-296 3-45 (134)
54 PF05425 CopD: Copper resistan 50.9 50 0.0011 26.1 5.8 42 218-260 3-46 (105)
55 PF14163 SieB: Superinfection 50.6 1.3E+02 0.0028 25.5 8.7 36 222-264 7-42 (151)
56 PRK07668 hypothetical protein; 50.3 45 0.00098 31.3 6.2 22 222-243 105-126 (254)
57 COG3771 Predicted membrane pro 49.6 94 0.002 24.4 6.7 28 269-296 56-83 (97)
58 PF15212 SPATA19: Spermatogene 49.0 22 0.00047 28.9 3.3 30 296-327 15-44 (130)
59 PF10392 COG5: Golgi transport 48.4 1.6E+02 0.0034 24.5 12.3 62 103-166 34-95 (132)
60 PF09972 DUF2207: Predicted me 48.4 1.4E+02 0.003 29.9 10.0 65 222-293 400-464 (511)
61 PRK13454 F0F1 ATP synthase sub 48.3 44 0.00095 29.5 5.6 7 244-250 20-26 (181)
62 PF00873 ACR_tran: AcrB/AcrD/A 48.0 31 0.00067 38.6 5.6 19 227-245 444-462 (1021)
63 PF04531 Phage_holin_1: Bacter 46.2 45 0.00098 25.8 4.7 31 214-244 7-37 (84)
64 KOG1277 Endosomal membrane pro 46.0 57 0.0012 33.4 6.4 30 215-244 396-425 (593)
65 KOG3684 Ca2+-activated K+ chan 45.8 69 0.0015 32.6 6.9 54 226-298 291-344 (489)
66 KOG1691 emp24/gp25L/p24 family 45.8 87 0.0019 28.5 7.0 38 182-228 150-187 (210)
67 PF13314 DUF4083: Domain of un 44.9 93 0.002 22.4 5.6 47 256-302 8-54 (58)
68 PF07787 DUF1625: Protein of u 44.9 1.1E+02 0.0024 28.2 8.0 66 212-280 179-246 (248)
69 PF11044 TMEMspv1-c74-12: Plec 44.6 43 0.00094 22.8 3.7 17 267-283 15-31 (49)
70 PF15050 SCIMP: SCIMP protein 44.2 18 0.00039 30.0 2.2 12 252-263 4-15 (133)
71 PF13903 Claudin_2: PMP-22/EMP 43.8 37 0.0008 28.6 4.3 55 217-279 69-123 (172)
72 PRK10881 putative hydrogenase 42.6 1E+02 0.0022 30.6 7.8 51 220-277 23-78 (394)
73 PF10856 DUF2678: Protein of u 42.3 38 0.00083 27.9 3.8 43 221-268 33-75 (118)
74 PRK14584 hmsS hemin storage sy 41.0 87 0.0019 27.2 6.0 92 220-316 19-121 (153)
75 PF12263 DUF3611: Protein of u 40.9 96 0.0021 27.7 6.5 54 221-279 27-81 (183)
76 COG0398 Uncharacterized conser 40.3 60 0.0013 29.8 5.3 46 222-274 58-103 (223)
77 PRK10633 hypothetical protein; 38.2 1.9E+02 0.004 22.3 8.7 57 224-283 17-73 (80)
78 PF06127 DUF962: Protein of un 38.1 2E+02 0.0042 22.6 9.0 32 257-288 44-75 (95)
79 PF11821 DUF3341: Protein of u 37.9 1.6E+02 0.0034 26.1 7.3 39 239-278 79-117 (173)
80 PF06770 Arif-1: Actin-rearran 37.9 52 0.0011 29.6 4.3 77 219-296 37-115 (196)
81 PF09788 Tmemb_55A: Transmembr 37.5 26 0.00056 32.8 2.4 55 221-281 200-254 (256)
82 PRK02935 hypothetical protein; 37.4 72 0.0016 25.9 4.6 10 282-291 62-71 (110)
83 PRK03001 M48 family peptidase; 37.3 1.7E+02 0.0038 27.5 8.2 21 220-240 5-25 (283)
84 KOG3091 Nuclear pore complex, 37.1 1.9E+02 0.0041 29.8 8.5 30 85-115 337-368 (508)
85 PF12273 RCR: Chitin synthesis 36.9 24 0.00052 29.3 2.0 6 254-259 2-7 (130)
86 PF12056 DUF3537: Protein of u 36.8 2.3E+02 0.0049 28.4 8.9 94 213-318 111-220 (398)
87 PF14015 DUF4231: Protein of u 36.6 95 0.002 24.5 5.4 11 222-232 21-31 (112)
88 PRK06041 flagellar assembly pr 36.2 5.3E+02 0.011 27.0 12.1 18 189-206 179-196 (553)
89 PF07331 TctB: Tripartite tric 35.9 2.4E+02 0.0053 23.0 8.2 43 224-266 5-47 (141)
90 PF06196 DUF997: Protein of un 35.8 2E+02 0.0043 22.0 8.1 29 252-280 42-70 (80)
91 PF10292 7TM_GPCR_Srab: Serpen 35.2 1.5E+02 0.0033 28.3 7.6 34 211-244 227-260 (324)
92 PF11026 DUF2721: Protein of u 34.6 2.7E+02 0.0058 23.1 9.0 12 233-244 83-94 (130)
93 PF02392 Ycf4: Ycf4; InterPro 34.6 1.4E+02 0.0031 26.6 6.4 62 215-278 17-83 (180)
94 PF13779 DUF4175: Domain of un 34.4 55 0.0012 36.0 4.7 38 253-294 31-68 (820)
95 PRK00523 hypothetical protein; 33.3 1.3E+02 0.0028 22.7 5.1 11 279-289 35-45 (72)
96 PF08566 Pam17: Mitochondrial 33.2 3.5E+02 0.0075 24.0 10.5 40 257-296 77-121 (173)
97 PF08496 Peptidase_S49_N: Pept 32.5 54 0.0012 28.4 3.5 31 253-283 6-36 (155)
98 COG4881 Predicted membrane pro 32.1 72 0.0016 30.6 4.4 31 212-244 154-184 (371)
99 PRK01844 hypothetical protein; 31.4 1.5E+02 0.0032 22.4 5.1 12 279-290 34-45 (72)
100 PF08653 DASH_Dam1: DASH compl 31.4 1.9E+02 0.0042 20.8 5.6 11 233-243 37-47 (58)
101 KOG0994 Extracellular matrix g 31.3 5.4E+02 0.012 29.8 11.2 19 285-303 1420-1438(1758)
102 PRK09458 pspB phage shock prot 30.6 2.4E+02 0.0053 21.4 7.8 34 255-288 4-40 (75)
103 PRK10714 undecaprenyl phosphat 30.5 4.3E+02 0.0092 25.3 9.8 25 215-239 227-251 (325)
104 PF01102 Glycophorin_A: Glycop 29.9 76 0.0017 26.4 3.8 13 256-268 67-79 (122)
105 COG3696 Putative silver efflux 29.7 1.4E+02 0.0031 33.2 6.7 91 149-248 296-386 (1027)
106 PF13120 DUF3974: Domain of un 29.6 58 0.0013 26.0 2.9 28 258-285 8-35 (126)
107 PF10828 DUF2570: Protein of u 29.4 1.8E+02 0.0038 23.5 5.9 15 254-268 4-18 (110)
108 PF11241 DUF3043: Protein of u 29.4 58 0.0013 28.7 3.2 14 222-235 81-94 (170)
109 PF11368 DUF3169: Protein of u 29.3 3.6E+02 0.0079 24.8 8.8 19 297-316 174-192 (248)
110 PF06679 DUF1180: Protein of u 29.3 61 0.0013 28.4 3.3 27 254-283 96-122 (163)
111 PF08580 KAR9: Yeast cortical 29.0 7.6E+02 0.017 26.7 12.7 12 310-321 373-384 (683)
112 COG4499 Predicted membrane pro 28.9 2.8E+02 0.0061 27.8 8.0 66 186-281 181-246 (434)
113 PF02990 EMP70: Endomembrane p 28.9 1.5E+02 0.0032 30.7 6.6 62 218-280 369-481 (521)
114 PF08006 DUF1700: Protein of u 28.6 3.9E+02 0.0084 23.2 10.4 8 139-146 8-15 (181)
115 COG3105 Uncharacterized protei 28.5 3.6E+02 0.0078 22.8 7.4 12 297-308 55-66 (138)
116 KOG2881 Predicted membrane pro 28.2 3E+02 0.0066 26.1 7.8 53 211-270 92-147 (294)
117 PRK13460 F0F1 ATP synthase sub 28.1 2.8E+02 0.006 24.0 7.4 7 244-250 7-13 (173)
118 COG5546 Small integral membran 28.0 89 0.0019 23.7 3.4 24 218-241 11-34 (80)
119 PF11669 WBP-1: WW domain-bind 27.8 66 0.0014 25.8 3.0 11 254-264 22-32 (102)
120 PF00822 PMP22_Claudin: PMP-22 27.6 34 0.00074 28.9 1.4 56 216-278 70-125 (166)
121 PF13042 DUF3902: Protein of u 27.4 2.9E+02 0.0064 23.9 6.9 66 198-269 48-114 (161)
122 COG1422 Predicted membrane pro 27.2 3.2E+02 0.007 24.8 7.5 44 233-280 24-68 (201)
123 COG3763 Uncharacterized protei 27.1 54 0.0012 24.6 2.2 16 276-291 31-46 (71)
124 PF12877 DUF3827: Domain of un 27.0 19 0.00042 37.9 -0.2 50 252-309 265-315 (684)
125 PF05360 YiaAB: yiaA/B two hel 26.9 1.7E+02 0.0038 20.4 4.7 40 224-269 6-45 (53)
126 PRK14622 hypothetical protein; 26.8 1.8E+02 0.0039 23.3 5.4 7 240-246 95-101 (103)
127 PRK09731 putative general secr 26.8 2.1E+02 0.0045 25.5 6.2 55 252-314 24-82 (178)
128 PF13829 DUF4191: Domain of un 26.7 5.1E+02 0.011 23.9 8.9 60 253-327 51-110 (224)
129 KOG4615 Uncharacterized conser 26.2 2.3E+02 0.0051 22.2 5.6 26 242-268 57-82 (122)
130 PRK10697 DNA-binding transcrip 26.2 1.8E+02 0.0039 24.1 5.3 29 287-315 74-102 (118)
131 CHL00019 atpF ATP synthase CF0 25.8 3.6E+02 0.0078 23.6 7.7 8 236-243 17-24 (184)
132 PF10027 DUF2269: Predicted in 25.5 1.8E+02 0.0039 24.5 5.5 24 222-248 51-74 (150)
133 PF11286 DUF3087: Protein of u 25.2 1.9E+02 0.0041 25.4 5.6 8 233-240 35-42 (165)
134 PHA03240 envelope glycoprotein 24.8 90 0.002 28.6 3.6 30 235-265 179-223 (258)
135 TIGR02978 phageshock_pspC phag 24.7 3.1E+02 0.0066 22.7 6.5 24 290-313 80-103 (121)
136 PF11700 ATG22: Vacuole efflux 24.6 4.9E+02 0.011 26.6 9.4 64 209-274 338-401 (477)
137 PF07043 DUF1328: Protein of u 24.6 49 0.0011 21.9 1.4 19 228-248 2-20 (39)
138 PF02404 SCF: Stem cell factor 24.6 25 0.00054 33.0 0.0 40 272-313 231-273 (273)
139 PF14036 YlaH: YlaH-like prote 24.3 1.3E+02 0.0029 22.9 3.9 26 252-277 3-29 (77)
140 PRK00247 putative inner membra 24.3 1.5E+02 0.0032 30.1 5.4 98 224-326 1-105 (429)
141 PF07895 DUF1673: Protein of u 24.1 74 0.0016 28.8 3.0 15 269-283 170-184 (205)
142 PF12273 RCR: Chitin synthesis 24.0 96 0.0021 25.7 3.5 26 257-283 2-27 (130)
143 PF08372 PRT_C: Plant phosphor 23.4 4.9E+02 0.011 22.6 9.3 24 253-276 94-117 (156)
144 COG4200 Uncharacterized protei 23.3 1.9E+02 0.0042 26.8 5.5 19 222-240 168-186 (239)
145 PRK06041 flagellar assembly pr 23.2 8.8E+02 0.019 25.4 15.4 13 175-187 143-155 (553)
146 PF04238 DUF420: Protein of un 23.0 4.6E+02 0.0099 22.0 8.2 65 217-282 36-102 (133)
147 PF03929 PepSY_TM: PepSY-assoc 22.8 1.5E+02 0.0031 17.9 3.1 19 221-239 7-25 (27)
148 KOG0810 SNARE protein Syntaxin 22.7 6.9E+02 0.015 24.0 11.3 14 212-225 263-276 (297)
149 PF03176 MMPL: MMPL family; I 22.7 75 0.0016 30.3 2.9 56 226-283 250-307 (333)
150 PF03915 AIP3: Actin interacti 22.5 8.2E+02 0.018 24.8 14.4 88 103-198 221-317 (424)
151 PF02009 Rifin_STEVOR: Rifin/s 22.5 1.5E+02 0.0033 28.5 4.9 14 270-283 274-287 (299)
152 PF05461 ApoL: Apolipoprotein 22.5 7E+02 0.015 24.1 9.5 20 215-234 105-124 (313)
153 PHA02819 hypothetical protein; 22.5 2.2E+02 0.0047 21.4 4.6 27 253-280 43-69 (71)
154 PF10104 Brr6_like_C_C: Di-sul 22.4 2.7E+02 0.0059 23.3 5.9 34 211-244 97-130 (135)
155 PRK06531 yajC preprotein trans 22.4 1.4E+02 0.0031 24.5 4.1 14 305-318 25-38 (113)
156 PF09911 DUF2140: Uncharacteri 22.0 42 0.00091 29.9 0.9 55 252-309 3-68 (187)
157 PF12270 Cyt_c_ox_IV: Cytochro 21.9 4.4E+02 0.0096 22.4 7.0 25 219-243 5-29 (137)
158 KOG0202 Ca2+ transporting ATPa 21.9 1.2E+02 0.0026 33.4 4.4 80 210-295 235-324 (972)
159 TIGR01291 nodJ ABC-2 type tran 21.9 6.1E+02 0.013 23.1 8.8 25 258-282 227-251 (253)
160 TIGR03747 conj_TIGR03747 integ 21.7 1.9E+02 0.0041 26.8 5.2 54 252-306 11-64 (233)
161 PRK11380 hypothetical protein; 21.6 5.1E+02 0.011 25.5 8.2 78 222-305 46-131 (353)
162 TIGR01478 STEVOR variant surfa 21.5 1.3E+02 0.0028 28.7 4.1 13 172-184 162-174 (295)
163 PF07106 TBPIP: Tat binding pr 21.5 5.2E+02 0.011 22.1 8.7 61 134-201 77-137 (169)
164 PRK05585 yajC preprotein trans 21.4 1.5E+02 0.0032 24.0 3.9 11 308-318 44-54 (106)
165 PF08552 Kei1: Inositolphospho 21.3 1.4E+02 0.0031 26.7 4.2 54 225-283 15-70 (189)
166 PRK12369 putative transporter; 21.2 7.6E+02 0.016 23.9 12.5 31 277-307 188-218 (326)
167 PTZ00370 STEVOR; Provisional 21.2 1.7E+02 0.0037 28.1 4.8 13 172-184 162-174 (296)
168 PF04217 DUF412: Protein of un 21.0 2.8E+02 0.0062 23.7 5.7 54 222-283 34-88 (143)
169 PRK13955 mscL large-conductanc 21.0 3.2E+02 0.0069 23.0 5.9 40 225-266 35-78 (130)
170 TIGR02120 GspF general secreti 20.9 7.9E+02 0.017 24.0 16.2 11 66-76 22-32 (399)
171 PF09529 Intg_mem_TP0381: Inte 20.7 3.1E+02 0.0068 24.6 6.5 29 215-246 155-183 (225)
172 PF10272 Tmpp129: Putative tra 20.6 2.6E+02 0.0055 27.7 6.1 41 198-243 16-60 (358)
173 KOG4010 Coiled-coil protein TP 20.6 6.3E+02 0.014 22.7 11.6 33 134-166 49-81 (208)
174 TIGR02976 phageshock_pspB phag 20.4 3.9E+02 0.0084 20.2 7.6 21 262-282 11-31 (75)
175 COG1333 ResB ResB protein requ 20.4 93 0.002 31.9 3.1 24 252-275 52-75 (478)
176 COG4117 Thiosulfate reductase 20.1 4E+02 0.0087 24.4 6.7 58 227-285 148-208 (221)
177 PRK04406 hypothetical protein; 20.1 3.9E+02 0.0084 20.1 6.2 44 104-153 6-49 (75)
No 1
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=4.2e-46 Score=358.74 Aligned_cols=243 Identities=19% Similarity=0.303 Sum_probs=215.4
Q ss_pred EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594 11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH 90 (338)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~ 90 (338)
++++++|++++++.. ++...+.++ .+++||+++|+|||+|++ +...++++++++.++. .+.++.++++.
T Consensus 78 ~~~~~~~iil~~~~~-~~~~~~~~~-~~l~~~l~~~~lITv~~~-------~~~~~~~~~~~~~~~~--~~~~~~~ll~~ 146 (324)
T PRK09546 78 RLGEGTLITLRCING-NTDERPDQL-VAMRVYITDRLIVSTRHR-------KVLALDDVVSDLQEGT--GPTDCGGWLVD 146 (324)
T ss_pred EECCEEEEEEEeccC-CCCCChhhe-EEEEEEEeCCEEEEEecC-------CcccHHHHHHHHHhCC--CCCCHHHHHHH
Confidence 489999999999876 444333344 899999999999999987 7899999999998875 56678899999
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhc
Q 019594 91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLR 167 (338)
Q Consensus 91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~ 167 (338)
+++.++|.|.+ .++.++++++++|++++.++.. .+++|+.+||+++++|+++.|+++++.+|.+ ...
T Consensus 147 lld~ivd~~~~-~l~~i~~~ld~lE~~l~~~~~~---------~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~ 216 (324)
T PRK09546 147 VCDALTDHASE-FIEELHDKIIDLEDNLLDQQIP---------PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWM 216 (324)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999 8999999999999999875322 1469999999999999999999999999984 233
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 019594 168 GNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIP 247 (338)
Q Consensus 168 ~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP 247 (338)
+++.+.+++|+.+|+.++.++++++++++..++|.+.+.+ |+++|++||+||++|+||+|||||||+|||||++||
T Consensus 217 ~~~~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~----s~~~N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mP 292 (324)
T PRK09546 217 SDDDRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVM----AEAMNRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIP 292 (324)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Confidence 5568999999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 248 GADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 248 ~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
|++ |+||||+++++|++++++++| ||++|||
T Consensus 293 el~-~~~gy~~~l~im~~i~~~~~~----~fkrk~W 323 (324)
T PRK09546 293 GGG-WPFGFSIFCLLLVVLIGGVAW----WLKRSKW 323 (324)
T ss_pred CcC-CcchHHHHHHHHHHHHHHHHH----HHHhccc
Confidence 999 999999999999998876544 5666776
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-45 Score=352.79 Aligned_cols=244 Identities=20% Similarity=0.270 Sum_probs=219.9
Q ss_pred eCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 019594 12 VAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHL 91 (338)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~L 91 (338)
++++.|++++++.. ++..+..+ +.+++|+++++++||+|+. +..+++.+++++.++. ..++++.++++++
T Consensus 75 ~d~~~~i~~~~~~~-~~~~~~~~-~~~v~~i~~~~~liT~r~~-------~~~~~~~vr~r~~~~~-~~~~~~~~l~~~l 144 (322)
T COG0598 75 YDDYLFIVLRDVNL-EEEEDKAE-TEPVSIIVGKRRLITIRHR-------PLPAFDRVRERLEKGT-LLTRGADELLYAL 144 (322)
T ss_pred eCCEEEEEEEeecc-cccccccc-ceeEEEEEeCCEEEEEecC-------CCccHHHHHHHHhccc-cccCCHHHHHHHH
Confidence 78889999999876 33332223 3899999999999999997 7899999999999863 3688999999999
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---hcc
Q 019594 92 ACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH---LRG 168 (338)
Q Consensus 92 l~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~---l~~ 168 (338)
++.++|+|.+ .++.++++++++|++++..+.++ .+.+|+.+||.++.+|+++.|+++++..+.+. ...
T Consensus 145 ld~i~d~~~~-~le~i~~~~~~ie~~l~~~~~~~--------~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~ 215 (322)
T COG0598 145 LDAIVDNYFP-VLEQIEDELEAIEDQLLASTTNE--------ELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLS 215 (322)
T ss_pred HHHHHHhhHH-HHHHHHHHHHHHHHHHhcCccHH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCC
Confidence 9999999999 89999999999999999987653 47899999999999999999999999999863 346
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 019594 169 NVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPG 248 (338)
Q Consensus 169 ~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~ 248 (338)
++.+.+++|+.+|+.++.+.++.++++++.++|.+.|.+ |++||++||+||++|+||+|||+|||+|||||++|||
T Consensus 216 ~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~i----s~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPe 291 (322)
T COG0598 216 EEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLI----NNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPE 291 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcC
Confidence 679999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 249 ADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 249 l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
++ ||||||+++++|+++++++ ..|+++|+|
T Consensus 292 l~-~~~Gy~~~l~~m~~~~~~~----~~~frrk~W 321 (322)
T COG0598 292 LD-WPYGYPIALILMLLLALLL----YLYFRRKGW 321 (322)
T ss_pred CC-CcccHHHHHHHHHHHHHHH----HHHHHhcCc
Confidence 99 9999999999999998855 556677766
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=4.3e-43 Score=336.32 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=214.0
Q ss_pred EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594 11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH 90 (338)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~ 90 (338)
.++++.|++++.+.. ++..+. . +.+++|+++++++||++++ +...++.+.+++..++.....++.+++++
T Consensus 69 ~~~~~~~i~~~~~~~-~~~~~~-~-~~~l~~~l~~~~liTv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 138 (318)
T TIGR00383 69 EDEDHLFIISFFLNE-DEDDTF-E-TEQVSFILGKNLLFTIHER-------ELPAFDSIRERIRTSQKVFEKGADYLLYD 138 (318)
T ss_pred EECCEEEEEEEeeec-cCCCcc-e-eEEEEEEEECCEEEEEEcC-------CCCcHHHHHHHHHhCchhhhCCHHHHHHH
Confidence 478999999998775 322222 2 3789999999999999987 67889999998876541123478999999
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--h--
Q 019594 91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--L-- 166 (338)
Q Consensus 91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~--l-- 166 (338)
+++.++++|.+ .++.++++++++|+.+++++.++ .+.+|+.+|+++..+|+++.|+++++.++.+. .
T Consensus 139 il~~ivd~~~~-~l~~l~~~~~~le~~l~~~~~~~--------~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~ 209 (318)
T TIGR00383 139 IFDAIIDSYFP-LLENIEDELEELEDEIISGPTST--------LMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPI 209 (318)
T ss_pred HHHHHHhccHH-HHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999 89999999999999999875433 47899999999999999999999999999852 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594 167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI 246 (338)
Q Consensus 167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~m 246 (338)
..++.+.+++|+.+++.++.+.++.+++.++.++|.+.+.+ |+++|++||+||++|+||+|||||||+|||||++|
T Consensus 210 ~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~----s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~m 285 (318)
T TIGR00383 210 QTEEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLV----NNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFM 285 (318)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 23557889999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 019594 247 PGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI 284 (338)
Q Consensus 247 P~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~ 284 (338)
|+++ |+||||+++++|++++++ .+.||++|+|+
T Consensus 286 P~l~-~~~gy~~~l~~m~~i~~~----~~~~fkrk~Wl 318 (318)
T TIGR00383 286 PELN-WKYGYPAVLIVMAVIALG----PLIYFRRKGWL 318 (318)
T ss_pred cccc-chhHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 9999 999999999999998875 45567777763
No 4
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=100.00 E-value=5.2e-39 Score=307.10 Aligned_cols=246 Identities=11% Similarity=0.060 Sum_probs=206.0
Q ss_pred eCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 019594 12 VAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHL 91 (338)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~L 91 (338)
+++++++...-... .+...+. +.+++|+++++++||+|+. +...+..+++++..++. ...++.++++.|
T Consensus 68 ~~~~~~~~~~~~~~-~~~~~~~--~~~v~fil~~~~LvTvr~~-------~~~~f~~~~~r~~~~~~-~~~~~~~vl~~L 136 (316)
T PRK11085 68 DEDGLHIHSFFFFE-DAEDHAG--NSTVAFTIRDGRLFTLRER-------ELPAFRLYRMRARSQTL-VDGNAYELLLDL 136 (316)
T ss_pred ECCeEEEEEEEEec-CCCCCcc--ceeEEEEEECCEEEEEecC-------CcchHHHHHHHHHhCCc-ccCCHHHHHHHH
Confidence 56666655544443 2222232 3789999999999999998 78899999999977751 255889999999
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--hcch
Q 019594 92 ACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--LRGN 169 (338)
Q Consensus 92 l~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~--l~~~ 169 (338)
++.++|++.+ .++.++.++|+++..++.++...+ ...++++|.++++.+..+|+++.|.++++..+.+. +..
T Consensus 137 ld~iVd~~ad-~lE~~~~~ld~ls~~if~~~~~~~----~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~- 210 (316)
T PRK11085 137 FETKIEQLAD-EIENIYSDLEKLSRVIMEGHQGDE----YDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPG- 210 (316)
T ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHhccCCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCh-
Confidence 9999999999 999999999999999997542222 23567899999999999999999999999988752 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 019594 170 VARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGA 249 (338)
Q Consensus 170 ~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l 249 (338)
+....++++.+++.++.+..+.+++++..++|.+.+.+ |+++|++||+||++|+||+|||+|||+|||||++|||+
T Consensus 211 ~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i----~~~~N~~mk~lTv~s~if~pptliagiyGMNf~~mP~~ 286 (316)
T PRK11085 211 GQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFI----NIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPEL 286 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCC
Confidence 24456788888999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 250 DNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 250 ~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
+ |+||||+++++|+++++++ +.|+++|+|
T Consensus 287 ~-~~~g~~~~l~~~~~~~~~~----~~~f~rk~W 315 (316)
T PRK11085 287 K-WSFGYPGAIILMILAGLAP----YLYFKRKNW 315 (316)
T ss_pred C-CcHHHHHHHHHHHHHHHHH----HHHHHHccc
Confidence 9 9999999999999988755 345666666
No 5
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=100.00 E-value=2.5e-37 Score=290.85 Aligned_cols=234 Identities=24% Similarity=0.324 Sum_probs=197.6
Q ss_pred EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594 11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH 90 (338)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~ 90 (338)
.++++.+++++.+.. .+....... .+++++++++++||++++ +...++++.+++.... ..+.++.++++.
T Consensus 45 ~~~~~~~~~l~~~~~-~~~~~~~~~-~~l~~~~~~~~lit~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~ll~~ 114 (292)
T PF01544_consen 45 VFDDYLFIVLRAPEY-EEEDDIDEE-SPLSFILGDNFLITVHRD-------PLPFIDELRERLESRN-ERPSSPEDLLYA 114 (292)
T ss_dssp EETTEEEEEEEEEEE-STTCCECCE-EEEEEEEETTEEEEEESS-------SSHCHHHHHHHHHSTT-CSCSSHHHHHHH
T ss_pred EECCeEEEEEEEcch-hhccccccc-ceEEEEEecceEEEEECC-------CChHHHHHHHHhhccC-CCCCCHHHHHHH
Confidence 478999999999887 443333222 579999999999999997 7888999999988222 377899999999
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----hh
Q 019594 91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HL 166 (338)
Q Consensus 91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~----~l 166 (338)
+++.+++.+.+ .++.++++++++|+.+.+.+.++ ..++|..+|+++..+++.+.+.++++.++.+ ..
T Consensus 115 il~~~~~~~~~-~l~~l~~~l~~le~~~~~~~~~~--------~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~ 185 (292)
T PF01544_consen 115 ILDEIVDDYFE-VLEELEDELDELEDELDDRPSNE--------LLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPF 185 (292)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHTHTTTHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTT
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhcccccchh--------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh
Confidence 99999999999 89999999999999995554433 5789999999999999999999999977775 22
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594 167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI 246 (338)
Q Consensus 167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~m 246 (338)
.+++...+++++.+++.++.+.++.+++++..+.+.+.+.+ +.++|++||+||++|+||+|+|||||+|||||++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~ 261 (292)
T PF01544_consen 186 ISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKL----SNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGM 261 (292)
T ss_dssp SHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS--
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCC
Confidence 34457888999999999999999999999999999999998 88999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHH--HHHHHHHHH
Q 019594 247 PGADNTPYAFGLF--TAILFFIGV 268 (338)
Q Consensus 247 P~l~~~~~gf~~~--~~imv~i~~ 268 (338)
|+.+ |+|||+++ +++|+++++
T Consensus 262 p~~~-~~~g~~~~~~~~~~~~~~~ 284 (292)
T PF01544_consen 262 PELD-WPYGYFFVIILGLMILVAI 284 (292)
T ss_dssp -SSS-SSS-SHHH--HHHHHHHHH
T ss_pred CccC-CccHHHHHHHHHHHHHHHH
Confidence 9999 99988777 666666554
No 6
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.7e-09 Score=104.71 Aligned_cols=144 Identities=22% Similarity=0.316 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------hh---------------cc----------------hh
Q 019594 134 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQ------------HL---------------RG----------------NV 170 (338)
Q Consensus 134 ~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~------------~l---------------~~----------------~~ 170 (338)
.++++..+++.+..+-.=....++.+.+|++ ++ .. .+
T Consensus 218 nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~d 297 (414)
T KOG2662|consen 218 NLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGED 297 (414)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccc
Confidence 4788889999999888877888888888762 11 00 00
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccCC
Q 019594 171 ART----LLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVT---HNLAVFGGCGVVLTVITGLFGINV 243 (338)
Q Consensus 171 ~~~----~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vm---k~LTivs~IflPlT~ItGifGMNf 243 (338)
+.. .++.-..++..+.+.++.+++.++.-.|.+.=. ++++.|..| -.||+-|.++..-++++|+||||.
T Consensus 298 d~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~----LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl 373 (414)
T KOG2662|consen 298 DVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQ----LDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNL 373 (414)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 011 111112234444444555555555544444433 366677766 468999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 244 DGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 244 ~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
+ .+.-+ .+|+|+++.++++++|++++...+-|.+.||-
T Consensus 374 ~-~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL 411 (414)
T KOG2662|consen 374 P-SSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKRL 411 (414)
T ss_pred c-chhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9 56656 78999999999999999998887777777763
No 7
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=95.70 E-value=1.9 Score=41.70 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR 179 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~ 179 (338)
..+.+..-++++|+++-.=.. . .....-....+++..+|+.+.-.++.+..+.+ .+........-.+..
T Consensus 148 i~d~~~~~le~i~~~~~~ie~--~------l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~ 219 (322)
T COG0598 148 IVDNYFPVLEQIEDELEAIED--Q------LLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDR 219 (322)
T ss_pred HHHhhHHHHHHHHHHHHHHHH--H------HhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHH
Confidence 567777778888877643210 0 01112224777788888888888777666543 333332224456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCc-hH-H
Q 019594 180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPY-AF-G 257 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~-gf-~ 257 (338)
+.++.+.+++..+.++++.+.+..+++.++..+.-.|+.=.++-++|++-..+.-.|=+-|. |+ |=.-. -|- .+ |
T Consensus 220 ~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagi-yG-MNf~~-mPel~~~~ 296 (322)
T COG0598 220 EYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGF-YG-MNFKG-MPELDWPY 296 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcc-cc-cCCCC-CcCCCCcc
Confidence 88999999999999999999999999999999999999889999999999999999999996 54 66544 453 33 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 019594 258 LFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 258 ~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
...+++ ++++.+++.-+..
T Consensus 297 Gy~~~l----~~m~~~~~~~~~~ 315 (322)
T COG0598 297 GYPIAL----ILMLLLALLLYLY 315 (322)
T ss_pred cHHHHH----HHHHHHHHHHHHH
Confidence 334333 3344566655543
No 8
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=94.61 E-value=2.2 Score=40.82 Aligned_cols=160 Identities=14% Similarity=0.175 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhH-HHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVA-RTLLEGI 178 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~-~~~l~dv 178 (338)
.++.+...++++|+++.+=.. +++ ...-....+++..+|+.+.-.+..+..... .+..... ...-.+.
T Consensus 143 ivd~~~~~l~~l~~~~~~le~----~l~----~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~ 214 (318)
T TIGR00383 143 IIDSYFPLLENIEDELEELED----EII----SGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEV 214 (318)
T ss_pred HHhccHHHHHHHHHHHHHHHH----HHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHH
Confidence 566777788888877743211 000 001123445677888877766666555443 3433321 1122556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCch--H
Q 019594 179 RKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYA--F 256 (338)
Q Consensus 179 ~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~g--f 256 (338)
...++.+.++++.+.+.++.+.+...+..+...+...|+.=+++-.+|++-+..+-.|=+=|. |+ |=.-. -|.. -
T Consensus 215 ~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGi-yG-MNf~~-mP~l~~~ 291 (318)
T TIGR00383 215 REYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGI-YG-MNFKF-MPELNWK 291 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCccc-Cccccch
Confidence 677888888999999999999999999999999999999999999999999999999999997 54 66544 4542 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019594 257 GLFTAILFFIGVVLIAVGLLY 277 (338)
Q Consensus 257 ~~~~~imv~i~~~l~~~~~~~ 277 (338)
|...+++ ++++.+++.-
T Consensus 292 ~gy~~~l----~~m~~i~~~~ 308 (318)
T TIGR00383 292 YGYPAVL----IVMAVIALGP 308 (318)
T ss_pred hHHHHHH----HHHHHHHHHH
Confidence 4344333 2334466543
No 9
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=93.27 E-value=10 Score=38.23 Aligned_cols=174 Identities=17% Similarity=0.219 Sum_probs=91.9
Q ss_pred HhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHH--------
Q 019594 96 SRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSL---HAREEIVFELYQ-------- 164 (338)
Q Consensus 96 ~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l---~~~~~vi~~L~~-------- 164 (338)
+....+ .+..+|.++.+|=..+-+....++ .++.+|..|--++-.+.-.. ....+++.++..
T Consensus 211 Ar~~~~-~L~~~E~~L~~l~~~~~~~~~~~~------~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~iV~~RL~eLrE 283 (420)
T PF11902_consen 211 ARELSP-ELSELEQRLAALTQRMASSEDTDD------ELLDELTRLAAEVEALAARTSYRFSASRAYYEIVEQRLAELRE 283 (420)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhcc
Confidence 344445 577777777777777776643332 36677777777665542211 111223333331
Q ss_pred -hhcc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 019594 165 -HLRG-----NVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVR-----------------AWLQDRSLRVTHN 221 (338)
Q Consensus 165 -~l~~-----~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~-----------------~~~~~~~N~vmk~ 221 (338)
++.+ +-..+.+.-....|..+.+.++.+.+++....+...+.++ +.++-++.+..-=
T Consensus 284 ~~i~g~~tl~eF~~RRl~PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rRa~lQLrLQqtVEG 363 (420)
T PF11902_consen 284 ERIPGYQTLSEFLERRLTPAMRTCEAVERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRRARLQLRLQQTVEG 363 (420)
T ss_pred cccCCCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111 1112222222333333333333333333333222222221 2244555556666
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 019594 222 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK 281 (338)
Q Consensus 222 LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~ 281 (338)
|+|+++-.- +.|+.|-=++++.... +|+.--++.++++-+.++.+|+++++.+.|
T Consensus 364 LSVvAIsYY----~vgL~~y~~k~l~~~g-~~~~~~l~~g~~vP~v~~~vw~~~rrir~~ 418 (420)
T PF11902_consen 364 LSVVAISYY----VVGLLGYLLKGLKAAG-LPVDPELATGLAVPVVLLAVWLGVRRIRRR 418 (420)
T ss_pred HHHHHHHHH----HHHHHHHHHhhHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777766544 4566666677777766 777666677777777788888888877654
No 10
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=92.43 E-value=1.6 Score=35.71 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594 253 PYAFGLFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 253 ~~gf~~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
.+|++++.++.+++++++++++.+.+..
T Consensus 72 ~~a~liv~~~~l~la~i~~~~~~~~l~~ 99 (121)
T PF07332_consen 72 WLAFLIVAGLYLLLALILLLIGRRRLRR 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3688888989999999888888888874
No 11
>PRK09546 zntB zinc transporter; Reviewed
Probab=91.76 E-value=13 Score=35.80 Aligned_cols=140 Identities=9% Similarity=0.001 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR 179 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~ 179 (338)
.++.+...++++|+++.+=. + .+.+.=...++++..+||.+...+..+..... .+........-++..
T Consensus 151 ivd~~~~~l~~i~~~ld~lE---~------~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~ 221 (324)
T PRK09546 151 LTDHASEFIEELHDKIIDLE---D------NLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDR 221 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHH---H------HHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHH
Confidence 56677777788887764321 0 01111001346788888888877776665543 344322222235566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCc
Q 019594 180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPY 254 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~ 254 (338)
.+++.+.+++..+.+.++...+...+..+...+...|+.=.++-++|++-.-..-.|=+-|. |+ |=.-+ -|.
T Consensus 222 ~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~IaGi-yG-MNf~~-mPe 293 (324)
T PRK09546 222 RRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLTGL-FG-VNLGG-IPG 293 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc-cccCC-CCC
Confidence 77888888888888888888887777766667777777666666776666555555666665 43 66544 555
No 12
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=91.76 E-value=3.4 Score=38.39 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---hcc-hhHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIIL-NQEIRRLSRQVIRVKWSLHAREEIVFELYQH---LRG-NVARTLLEG 177 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~-~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~---l~~-~~~~~~l~d 177 (338)
.++.....++.+++++..-.. .+ ...=...-+++..+|+.+...+..+.....- +.. ......-.+
T Consensus 119 ~~~~~~~~l~~l~~~l~~le~---------~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~ 189 (292)
T PF01544_consen 119 IVDDYFEVLEELEDELDELED---------ELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDE 189 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------hcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhh
Confidence 466667777777776532110 01 1122234455667777776666665554432 111 112222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHH
Q 019594 178 IRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFG 257 (338)
Q Consensus 178 v~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~ 257 (338)
....++.+.++++.+.++++.+.+...+..+...+...++.=+.+..+|++-+...=+|=+=|. |+ |-... -|..-|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~-fG-MN~~~-~p~~~~ 266 (292)
T PF01544_consen 190 DKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGI-FG-MNFKG-MPELDW 266 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS-TT-S-SS----SSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCccC-CCccCC
Confidence 4566888999999999999999999999998888999999778888877666666444555554 44 65544 454332
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhccCC
Q 019594 258 L-FTAILFFIGVVLIAVGLLYLGLKK 282 (338)
Q Consensus 258 ~-~~~imv~i~~~l~~~~~~~~~~~~ 282 (338)
- .....+++++.++..++.|+.+||
T Consensus 267 ~~g~~~~~~~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 267 PYGYFFVIILGLMILVAILLYWWFKR 292 (292)
T ss_dssp SS-SHHH--HHHHHHHHHHHHCCTTS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHheeC
Confidence 2 223333344555556666666665
No 13
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.67 E-value=0.96 Score=40.06 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHhccCCCCch
Q 019594 220 HNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTA-ILFFIGVVLIAVGLLYLGLKKPITE 286 (338)
Q Consensus 220 k~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~-imv~i~~~l~~~~~~~~~~~~~~~~ 286 (338)
++.+++++|..-+-+++|+-|-=+. .|++. -.|...++ ++++++++++..|+.++..+++.+.
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv~~-~~~l~---~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~ 68 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALVLF-ISGLG---ALISFILGIALLALGVVLLSLGLLCLLSKRPVQS 68 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 4455566666666666777664343 34333 23333333 3444578888899999988887664
No 14
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=91.05 E-value=1.4 Score=39.84 Aligned_cols=52 Identities=29% Similarity=0.317 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHH
Q 019594 137 EIRRLSRQVIRVKWSLHAREEIVFELYQHLR-----GNVARTLLEGIRKNAREMIEE 188 (338)
Q Consensus 137 ~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~-----~~~~~~~l~dv~d~~~~l~~~ 188 (338)
=+.++++++..-.-.-...++++.++.+++. +..++..+.+..++++++++.
T Consensus 9 y~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~tA~~lfG~P~~~a~eli~~ 65 (206)
T PF06570_consen 9 YIFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKTARQLFGDPKEYADELIKP 65 (206)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHcCCHHHHHHHHhcc
Confidence 3445555553333333344445555554432 334566666666667666654
No 15
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=89.64 E-value=21 Score=34.61 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR 179 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~ 179 (338)
.++.+.+.++.++..+-+-... .+.......+.++=+++.++++.....++.+..+.+ .+... .....+..
T Consensus 140 iVd~~ad~lE~~~~~ld~ls~~----if~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~--~~~~~~~~ 213 (316)
T PRK11085 140 KIEQLADEIENIYSDLEKLSRV----IMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRK--ARLPGGQL 213 (316)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH----hccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCChhHH
Confidence 5677777777777766543211 011000013344447788888888888887766554 23221 12233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHH
Q 019594 180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLF 259 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~ 259 (338)
+++..+.++++.+.++++.+.|...+.+++.++...|+.=.++-++|++-....-.|=+-|+ |+ |-.-. -|..-|-
T Consensus 214 ~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagi-yG-MNf~~-mP~~~~~- 289 (316)
T PRK11085 214 EQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASS-YG-MNFEF-MPELKWS- 289 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-cc-cccCC-CCCCCCc-
Confidence 67888999999999999999999999999999999999999999999999999999999998 54 77555 5643332
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 019594 260 TAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 260 ~~imv~i~~~l~~~~~~~~~~ 280 (338)
.+.. +..++++..++..+..
T Consensus 290 ~g~~-~~l~~~~~~~~~~~~~ 309 (316)
T PRK11085 290 FGYP-GAIILMILAGLAPYLY 309 (316)
T ss_pred HHHH-HHHHHHHHHHHHHHHH
Confidence 2221 2223344466555543
No 16
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=88.49 E-value=20 Score=32.95 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=3.9
Q ss_pred cCCCCCC
Q 019594 241 INVDGIP 247 (338)
Q Consensus 241 MNf~~mP 247 (338)
|+|=|+|
T Consensus 175 m~fl~v~ 181 (230)
T PF03904_consen 175 MDFLHVD 181 (230)
T ss_pred hhhhhHH
Confidence 5665555
No 17
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=84.43 E-value=8.6 Score=37.74 Aligned_cols=88 Identities=11% Similarity=0.191 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 019594 109 GAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEE 188 (338)
Q Consensus 109 ~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~~~~~~~~l~dv~d~~~~l~~~ 188 (338)
-.+|+||+++-.+....| .+..+|...|+.++-+|-.+...-..+..|. +..+....+-|--|++++.++.+.
T Consensus 8 ~~LeeLe~kLa~~d~~Kd------~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie-~~~~~s~qeKFl~IR~KlleL~~~ 80 (379)
T PF11593_consen 8 LKLEELEEKLASNDNSKD------SVMDKISEAQDSILPLRLQFNEFIQTMANIE-EMNNKSPQEKFLLIRSKLLELYNK 80 (379)
T ss_pred CcHHHHHHHHhcCCchHH------HHHHHHHHHHhccccHHHHHHHHHHHHHHhh-cccccCHHHHHHHHHHHHHHHHHH
Confidence 357888888886544443 4677888888888877766655555444442 344444555666677777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 019594 189 QEAVRGRLFTIQDVM 203 (338)
Q Consensus 189 l~~~re~l~~l~d~~ 203 (338)
+..+..-...|+=.+
T Consensus 81 lQ~lS~df~~LqPLF 95 (379)
T PF11593_consen 81 LQELSSDFQKLQPLF 95 (379)
T ss_pred HHHHHHHHHHhchHH
Confidence 777666655555433
No 18
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=83.82 E-value=12 Score=30.51 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Q 019594 225 FGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQEL 299 (338)
Q Consensus 225 vs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (338)
++.|..=..+++++.|.|.-..+...=.||.|. +.-+++.+...+..-++.....+. ++++..--+.|++--
T Consensus 4 ~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFi--lLnl~lS~~Aa~~ap~IlmsQNRq-~~~dr~ra~~D~~in 75 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILLNILAPPRPAFDPYPFI--LLNLVLSLEAAYQAPLILMSQNRQ-AARDRLRAELDYQIN 75 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCccHH--HHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHHHHH
Confidence 345555667888999999976554221455554 334444444455555666655554 444444444555433
No 19
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=82.58 E-value=56 Score=32.72 Aligned_cols=35 Identities=3% Similarity=0.105 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcc
Q 019594 85 HEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNR 121 (338)
Q Consensus 85 ~~ll~~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~ 121 (338)
...+..+.+.+.+.-. ....+++.++.|.+.+..+
T Consensus 211 ~~~l~~~~~el~eik~--~~~~L~~~~e~Lk~~~~~e 245 (395)
T PF10267_consen 211 NLGLQKILEELREIKE--SQSRLEESIEKLKEQYQRE 245 (395)
T ss_pred cchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4456666666655433 3577888888888876654
No 20
>COG3462 Predicted membrane protein [Function unknown]
Probab=80.56 E-value=6.4 Score=31.99 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHh--hhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 019594 213 DRSLRVTHNL----AVFGGCGVVLTVITG--LFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIA 272 (338)
Q Consensus 213 ~~~N~vmk~L----Tivs~IflPlT~ItG--ifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~ 272 (338)
.+.|+...+| ++++++-+.++.+.| +|-||.-+|-|. -||.|++.-+|.+++++.+.
T Consensus 3 k~ven~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG---~yGm~lImpI~~~vvli~lv 65 (117)
T COG3462 3 KKVENFAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGG---LYGMWLIMPIFWAVVLIFLV 65 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccc---hhhhHHHHHHHHHHHHHHHH
Confidence 3444544444 444444444444433 444666556654 47888777776666554433
No 21
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=77.32 E-value=51 Score=29.05 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 019594 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGAD 250 (338)
Q Consensus 181 ~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~ 250 (338)
...++.++++...+++....+.|...+ ..-|. .+--.|-++++|++|+ +-+|..+
T Consensus 119 ~~~~l~~~l~~~E~~I~~aR~~YN~av-----~~yN~--------~i~~FP~~lvA~~~gf--~~~~~f~ 173 (186)
T PF04011_consen 119 NFQQLMAQLEETENRIAAARRAYNDAV-----RDYNT--------AIRQFPTNLVAGIFGF--KPKEYFE 173 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--------HH---------------------S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--------HHHhccHHHHHHhcCC--CcCCCcc
Confidence 355666677777777777777787776 35555 2223699999999995 4456543
No 22
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=77.19 E-value=2.2 Score=39.90 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCCCCCC--CC--CchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 019594 215 SLRVTHNLAVFGGCGVVLTVITG-LFGINVDGIPGAD--NT--PYAFGLFTAILFFIGVVLIAVGLLYLGLK 281 (338)
Q Consensus 215 ~N~vmk~LTivs~IflPlT~ItG-ifGMNf~~mP~l~--~~--~~gf~~~~~imv~i~~~l~~~~~~~~~~~ 281 (338)
-+++.-+.+-++.-+.|++-=.. +||||+..=|-.. +| .|+||.++++++++-++++..|..|+..|
T Consensus 177 ~enVTVvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 177 YSKISILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred ccceEEEecCCccccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34433334444455556544333 8999998655331 13 46788888888877777888887777655
No 23
>COG5487 Small integral membrane protein [Function unknown]
Probab=75.29 E-value=5.9 Score=27.69 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCC
Q 019594 225 FGGCGVVLTVITGLFGINVDGIPGAD 250 (338)
Q Consensus 225 vs~IflPlT~ItGifGMNf~~mP~l~ 250 (338)
|+.||+...+|+|.+| |.|+.+..
T Consensus 4 waliFlvialIa~~lG--FgGiagaa 27 (54)
T COG5487 4 WALIFLVIALIAGALG--FGGIAGAA 27 (54)
T ss_pred HHHHHHHHHHHHHHhC--cccHHHHH
Confidence 7889999999999999 77787765
No 24
>COG4420 Predicted membrane protein [Function unknown]
Probab=75.23 E-value=20 Score=32.04 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 019594 219 THNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQE 298 (338)
Q Consensus 219 mk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (338)
-+++..++.|+.-..++.-+-+.|....|+..-.||.| ++.=+++.+...+..-++....++. .++|.+.-+.|+|-
T Consensus 52 a~f~Gsw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPF--i~LnLllS~~AaiqAp~IlmSQNRQ-a~rDr~~a~~d~qv 128 (191)
T COG4420 52 ARFGGSWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPF--ILLNLLLSTLAAIQAPLILMSQNRQ-AERDRLRAELDYQV 128 (191)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccH--HHHHHHHHHHHHHHHhHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 34566677777777777777788998888744134444 4444444444444455555555544 56677777777776
Q ss_pred HHHHhHHHHHHHHHHhhh
Q 019594 299 LVKKFQHEAETHAQVRKN 316 (338)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~ 316 (338)
-.+-=|..+.=|+++..-
T Consensus 129 nlkaE~e~~~l~~kLd~l 146 (191)
T COG4420 129 NLKAEQEVAALHEKLDEL 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666667777543
No 25
>PRK13682 hypothetical protein; Provisional
Probab=73.82 E-value=3.3 Score=29.08 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCC
Q 019594 225 FGGCGVVLTVITGLFGINVDGIPGAD 250 (338)
Q Consensus 225 vs~IflPlT~ItGifGMNf~~mP~l~ 250 (338)
|+.+|+...+|+|++| |.|+-+..
T Consensus 4 waliFliiA~iA~~lG--F~GiAg~a 27 (51)
T PRK13682 4 WAIIFLVIALIAAVLG--FGGIAGAA 27 (51)
T ss_pred HHHHHHHHHHHHHHhc--cchHHHHH
Confidence 6889999999999999 66666654
No 26
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=73.07 E-value=26 Score=31.24 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 019594 224 VFGGCGVVLTVITGLFGI 241 (338)
Q Consensus 224 ivs~IflPlT~ItGifGM 241 (338)
+++++..-++++++++|-
T Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (199)
T PF10112_consen 12 ILGVLIAAITFLVSFFGF 29 (199)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444445555555553
No 27
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=71.29 E-value=8.7 Score=27.90 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 019594 254 YAFGLFTAILFFIGVVLIAVG 274 (338)
Q Consensus 254 ~gf~~~~~imv~i~~~l~~~~ 274 (338)
...++++++++++|+++.++.
T Consensus 18 ~pl~l~il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLL 38 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 455555555666655554433
No 28
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=70.95 E-value=5.7 Score=41.85 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHH
Q 019594 222 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAIL 263 (338)
Q Consensus 222 LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~im 263 (338)
+.+.+.-++|.+++.+.++..+. +... |+|+||+.++..
T Consensus 168 ~~~~~~~~i~~~~~~~~ia~~~~--~~~~-WRw~~~~~~i~~ 206 (599)
T PF06609_consen 168 LAIASIPFIITTWISPLIAQLFA--AHSG-WRWIFYIFIIWS 206 (599)
T ss_pred hHHHHHHHHhhhcccHHHHHHhc--cCCC-cchHHHHHHHHH
Confidence 45566677788888899998775 3446 999998876543
No 29
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=69.95 E-value=19 Score=28.22 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCCCCCCc
Q 019594 264 FFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGD 327 (338)
Q Consensus 264 v~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (338)
++++++..++|..||..++--.+-+-.-.+-+-..-.+.=...+=+|.++|+....+.+.++.|
T Consensus 9 ~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~ 72 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRD 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHH
Confidence 3444445556677776666522211111111112223333334446888888766444444444
No 30
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.84 E-value=1.6e+02 Score=30.59 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=11.2
Q ss_pred ccCCCCchHHHHHHHH
Q 019594 279 GLKKPITEEQVEVRKL 294 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~ 294 (338)
...+..|++|..+|++
T Consensus 229 h~~~~kt~~~~~i~~~ 244 (527)
T COG1955 229 HRLRIKTKEQIKIRRL 244 (527)
T ss_pred ccCCCCcHHHHHHHHH
Confidence 4455567888888876
No 31
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.10 E-value=1.8e+02 Score=30.94 Aligned_cols=115 Identities=10% Similarity=0.069 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc---ch-hHHHHHHHHH
Q 019594 104 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLR---GN-VARTLLEGIR 179 (338)
Q Consensus 104 ~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~---~~-~~~~~l~dv~ 179 (338)
++.++.++++++.++-..+..++. ..+..++..+++++-.++.-+....+-+..+...+. .. ........-.
T Consensus 400 ~~~~e~el~~l~~~l~~~~~~e~i----~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 400 LRELEEELAEVDKKISTIPSEEQI----AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667888899999888776543431 234455556666665555555444444443332111 00 0001111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNL 222 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~L 222 (338)
+...+.++..+.+++.+....+.........++..+|++.+-|
T Consensus 476 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l 518 (650)
T TIGR03185 476 FELERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKL 518 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666665555555554444556666544444
No 32
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=66.70 E-value=10 Score=29.97 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Q 019594 220 HNLAVFGGCGVVLTVITGLFGINV 243 (338)
Q Consensus 220 k~LTivs~IflPlT~ItGifGMNf 243 (338)
++|+.++.++.-+..+.+++...+
T Consensus 6 ~iL~~Ig~il~il~~~~~l~~~~~ 29 (100)
T PF13273_consen 6 KILGWIGGILGILFGFFGLLIGFF 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777766654444444444
No 33
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=66.40 E-value=14 Score=27.83 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=19.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 019594 252 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPIT 285 (338)
Q Consensus 252 ~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~ 285 (338)
+||||...++++ ++-.+++.++.=|.+.|.+-
T Consensus 18 dP~~Fl~~vll~--LtPlfiisa~lSwkLaK~ie 49 (74)
T PF15086_consen 18 DPYEFLTTVLLI--LTPLFIISAVLSWKLAKAIE 49 (74)
T ss_pred ChHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHH
Confidence 899998655433 34445555666666665543
No 34
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=65.85 E-value=48 Score=25.32 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=14.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHH
Q 019594 246 IPGADNTPYAFGLFTAILFFIGV 268 (338)
Q Consensus 246 mP~l~~~~~gf~~~~~imv~i~~ 268 (338)
+.... +|.|||++.-+.+++-+
T Consensus 35 ~~~~G-fPlgfw~aaQGsi~~fv 56 (77)
T TIGR03647 35 FTFFG-FPLGFWFAQQGSIYVFV 56 (77)
T ss_pred CeeCC-CChHHHHHHhhHHHHHH
Confidence 34445 89999987765544433
No 35
>PF13994 PgaD: PgaD-like protein
Probab=64.83 E-value=21 Score=30.16 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHH-HHHHHhhhccCCCC--CCCCCCCCchHHHHHHHHH-----HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Q 019594 228 CGVV-LTVITGLFGINVDG--IPGADNTPYAFGLFTAILF-----FIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQEL 299 (338)
Q Consensus 228 IflP-lT~ItGifGMNf~~--mP~l~~~~~gf~~~~~imv-----~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (338)
++.| +|++.+++|.+..+ |+ .. ..-+....+.+-+ ..++++.|..+.++++++. ++.......+.+|.
T Consensus 31 L~~pl~~ll~~ll~~~~~~~~~~-~~-~~~~~~~~l~~y~~i~~~~a~~Li~Wa~yn~~Rf~~~--~rr~~~~~~~~~el 106 (138)
T PF13994_consen 31 LWRPLLTLLAWLLGLHLFYPQMS-LG-GFLSSLNTLQIYLLIALVNAVILILWAKYNRLRFRGR--RRRRRPPPVSDEEL 106 (138)
T ss_pred HHHHHHHHHHHHHccccccchhh-hc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhccCCCCCCHHHH
Confidence 4455 47888899988763 22 11 1112221221111 1122233344444433333 11111122667778
Q ss_pred HHHhHHHHHHHHHHhhh
Q 019594 300 VKKFQHEAETHAQVRKN 316 (338)
Q Consensus 300 ~~~~~~~~~~~~~~~~~ 316 (338)
-+.|+=.++.-+++|+.
T Consensus 107 A~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 107 ARSFGLSPEQLQQLRQA 123 (138)
T ss_pred HHHcCCCHHHHHHHHhC
Confidence 89999999999999875
No 36
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=63.33 E-value=49 Score=29.12 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 019594 219 THNLAVFGGCGVVLTVITGLFGINVDGIPGAD 250 (338)
Q Consensus 219 mk~LTivs~IflPlT~ItGifGMNf~~mP~l~ 250 (338)
||.+..+.+ ++|+...++= | |||..+
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~-g----~~~~~~ 26 (184)
T PRK13455 1 MKLLSALAA-LAASPALAAG-G----PFFSLS 26 (184)
T ss_pred CchHHHHHH-HccchHhhcC-C----CCCCCc
Confidence 455555543 3666555551 1 466665
No 37
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=60.73 E-value=52 Score=27.24 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Q 019594 221 NLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300 (338)
Q Consensus 221 ~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (338)
.|-++|=|+.|..+.+|+-.+-| ...+ .+.+.++....|.+.|++-++|...++++--|--.+|.-
T Consensus 39 LfvifSPVlVPaai~~~l~~~Gf-------------l~sg-~~g~~~ls~lsW~~~y~rg~~~~~~~q~d~Ak~ri~d~a 104 (118)
T PF01277_consen 39 LFVIFSPVLVPAAIAIGLAVAGF-------------LTSG-AFGLTALSSLSWMYNYFRGRHPPGPDQLDYAKRRIADTA 104 (118)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH-------------HHhH-HHHHHHHHHHHHHHHHhccCCCCCCccHHHHHHHHHHHH
Confidence 35556666666666666544433 2111 112222334467889999999888777766665555544
Q ss_pred H
Q 019594 301 K 301 (338)
Q Consensus 301 ~ 301 (338)
+
T Consensus 105 ~ 105 (118)
T PF01277_consen 105 S 105 (118)
T ss_pred H
Confidence 3
No 38
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=60.73 E-value=14 Score=31.44 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 254 YAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 254 ~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
+|||+++++++++.++.++...+++..+++
T Consensus 21 ~GWwll~~lll~~~~~~~~~~~r~~~~~~y 50 (146)
T PF14316_consen 21 PGWWLLLALLLLLLILLLWRLWRRWRRNRY 50 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 789988888777777666666666666555
No 39
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.09 E-value=1.9e+02 Score=28.94 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCC
Q 019594 227 GCGVVLTVITGLFGINVDGIPGAD 250 (338)
Q Consensus 227 ~IflPlT~ItGifGMNf~~mP~l~ 250 (338)
.+|..|.|..-+=|||-+ +|...
T Consensus 181 l~~VvP~f~~if~~~~~~-LP~lT 203 (397)
T COG1459 181 LIFVVPQFAEIFESLGAE-LPALT 203 (397)
T ss_pred HHHHhccHHHHHhhcCCC-CcHHH
Confidence 345566777767778887 88664
No 40
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=59.98 E-value=5.1 Score=30.72 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 019594 216 LRVTHNLAVFGGCGVVLTVITGLFGINVD 244 (338)
Q Consensus 216 N~vmk~LTivs~IflPlT~ItGifGMNf~ 244 (338)
++-...+++++++|++..-+.+.||+.+.
T Consensus 8 kNk~fw~ali~al~l~~q~v~~~fG~~~~ 36 (78)
T TIGR01598 8 KNKATLIALLGALFLAIQSILDNFGVLWL 36 (78)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33345689999999999999999999765
No 41
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=59.04 E-value=20 Score=38.06 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhh---ccCCCCCCCCCCCCchHHHHHHHHH
Q 019594 228 CGVVLTVITGLF---GINVDGIPGADNTPYAFGLFTAILF 264 (338)
Q Consensus 228 IflPlT~ItGif---GMNf~~mP~l~~~~~gf~~~~~imv 264 (338)
+..|+-++.+.| |.|+.++|..- +..+|...++.+.
T Consensus 557 vlapl~~Ll~~W~~lG~Nl~~l~~~~-~~~~F~~~l~ai~ 595 (636)
T PF05817_consen 557 VLAPLLVLLILWLKLGANLSNLPFSP-SAILFHGGLGAIE 595 (636)
T ss_pred HHHHHHHHHHHHHHcCcchhhCCCCc-hHHHHHHHHHHHH
Confidence 444544444443 78999999765 4444544444443
No 42
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=58.92 E-value=38 Score=29.46 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 174 LLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV 207 (338)
Q Consensus 174 ~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~ 207 (338)
.++.=.|+++.+...++.+.+.+.+.-|-+.++.
T Consensus 56 ~lr~Rydrlr~va~rvQ~vlgd~At~gERl~all 89 (156)
T PF08372_consen 56 SLRMRYDRLRSVAGRVQNVLGDVATQGERLQALL 89 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444444444444444443
No 43
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=58.01 E-value=35 Score=27.85 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC---CCc--hHHHHHHHHHHHHHHHHhHH---HHHHHHHHhh
Q 019594 256 FGLFTAILFFIGVVLIAVGLLYLGLKK---PIT--EEQVEVRKLELQELVKKFQH---EAETHAQVRK 315 (338)
Q Consensus 256 f~~~~~imv~i~~~l~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 315 (338)
||++++++++++++++++-+. +.++ ... ..+..+=+--|.|+..--.+ .+++|++.|.
T Consensus 2 fWl~~a~l~~~a~~~v~~pl~--r~~~~~~~~~~~~~n~~iyr~qL~ELe~d~~~G~l~~~e~~~~~~ 67 (117)
T TIGR03142 2 FWIVAALLTLVALLFLLLPLL--RRRRAAATVDRDELNLAVYRDRLAELERDLAEGLLDEAEAEAARA 67 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCccccccccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 788888877766654444333 2222 122 23445555555666555443 2344444443
No 44
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=57.38 E-value=87 Score=24.13 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=11.1
Q ss_pred CCchHHHHHHHHHHHH
Q 019594 252 TPYAFGLFTAILFFIG 267 (338)
Q Consensus 252 ~~~gf~~~~~imv~i~ 267 (338)
+|.|||++.=+.+++-
T Consensus 44 fPlgfw~aaQGsi~~f 59 (81)
T PF13937_consen 44 FPLGFWFAAQGSIIVF 59 (81)
T ss_pred CChHHHHHHHhHHHHH
Confidence 8899998766554443
No 45
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=56.63 E-value=15 Score=35.26 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=32.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCCCC
Q 019594 281 KKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPT 324 (338)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (338)
.+..+|+..++...+-+. -.-..++||+|+|+|+.+.+...|.
T Consensus 67 ~r~tdeekr~ler~~~~i-~~d~rraAE~HRqvR~yv~s~ikPG 109 (397)
T KOG2775|consen 67 DRTTDEEKRELERTESDI-YQDLRRAAEAHRQVRKYVQSIIKPG 109 (397)
T ss_pred cccchHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHhccCc
Confidence 566778888887765443 4557789999999999888777664
No 46
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=55.81 E-value=39 Score=26.27 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=20.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 252 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 252 ~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
.++.+....+++++++.+..++..++..+++|
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~k~~P 121 (121)
T PF02687_consen 90 SPWSFLIVFIIILLISIIASLIPIRRILKINP 121 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 44555666666666666666676666666554
No 47
>COG4327 Predicted membrane protein [Function unknown]
Probab=54.91 E-value=22 Score=28.16 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=19.4
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCchHHHHHH
Q 019594 231 VLTVITGLFGINVDGIPGADNTPYAFGLFTA 261 (338)
Q Consensus 231 PlT~ItGifGMNf~~mP~l~~~~~gf~~~~~ 261 (338)
-.||++-+|---+..|-... ||.|||..-=
T Consensus 30 lVSfvvi~fa~alst~rifg-~pf~ywma~Q 59 (101)
T COG4327 30 LVSFVVILFARALSTMRIFG-WPFGYWMAQQ 59 (101)
T ss_pred HHHHHHHHHHHhhcccEEec-cchhhhhhcC
Confidence 34555566655555566667 8889997543
No 48
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=53.87 E-value=1.2e+02 Score=29.41 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCchHHH
Q 019594 228 CGVVLTVITGLFGINVDGIPGADNTPYAFGL 258 (338)
Q Consensus 228 IflPlT~ItGifGMNf~~mP~l~~~~~gf~~ 258 (338)
.|+|+-+-- +-+++.+|...+.|++-.+
T Consensus 139 aFlPiL~~l---S~~V~~lp~~g~i~~~Lv~ 166 (315)
T PF05992_consen 139 AFLPILWEL---SSHVSELPFFGEIPHSLVW 166 (315)
T ss_pred HHHHHHHHH---hccCCcCcccCCCchHHHH
Confidence 355654432 3367778877656666433
No 49
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=53.32 E-value=1.2e+02 Score=24.45 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019594 105 KTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELY 163 (338)
Q Consensus 105 ~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~ 163 (338)
+..+.+++.+|.++-+-|+.++.+ .+..++..++.++-.+...+.+......-|.
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~----~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVH----DLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334888889998888877665532 2344566666666655555555544444443
No 50
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=52.49 E-value=3.5e+02 Score=29.65 Aligned_cols=183 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhhhhHhHHHHHH---HHHHHHHHHhcccCcchhhHHHHHHHHHHHHHH
Q 019594 66 ITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFG---AADEIELKFVNRRNLEDMNLFAIILNQEIRRLS 142 (338)
Q Consensus 66 ~~~l~~~l~~~~~~~~~~~~~ll~~Ll~~l~d~~~~~~~~~i~~---~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LR 142 (338)
+++..+++... .......+...+.+.+-....+ .++.+.+ .+.+..+.+..-..... .+.....+|+
T Consensus 204 y~~~~~~v~~~---L~~~~~~lg~~i~~~l~~~~~~-~L~~i~~l~~~~~~~~~~L~~v~~~~~------~L~~~~~qL~ 273 (806)
T PF05478_consen 204 YSELKDHVSSD---LDNIGSLLGGDIQDQLGSNVYP-ALDSILDLAQAMQETKELLQNVNSSLK------DLQEYQSQLR 273 (806)
T ss_pred HHHHHHHHHHH---HHhccchhhHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHH------HHHHHHhhcc--------------------------------hhHHHHHHHHHHHHH-
Q 019594 143 RQVIRVKWSLHAREEI------VFELYQHLRG--------------------------------NVARTLLEGIRKNAR- 183 (338)
Q Consensus 143 r~l~~lrr~l~~~~~v------i~~L~~~l~~--------------------------------~~~~~~l~dv~d~~~- 183 (338)
..+...|+.+...... ...+.+.... .+....++++-+.+.
T Consensus 274 ~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~ 353 (806)
T PF05478_consen 274 DGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNVTSQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQN 353 (806)
T ss_pred HHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCChHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchH
Q 019594 184 -------EMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAF 256 (338)
Q Consensus 184 -------~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf 256 (338)
.+.+.++...+.+....+.+...+.+..+.-.+++.+...-+ .|..+ +|++
T Consensus 354 qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~--------------------~~~~~--~y~~ 411 (806)
T PF05478_consen 354 QTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSF--------------------EDEYE--KYDS 411 (806)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--------------------hhHHH--HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 019594 257 GLFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 257 ~~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
+...+..++.+++++++.+.++|+
T Consensus 412 yR~~~~lil~~~llLIv~~~~lGL 435 (806)
T PF05478_consen 412 YRWIVGLILCCVLLLIVLCLLLGL 435 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 51
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=52.28 E-value=2.3e+02 Score=27.53 Aligned_cols=68 Identities=18% Similarity=0.029 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 019594 211 LQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI 284 (338)
Q Consensus 211 ~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~ 284 (338)
++-++.....=|+|+++ --.+.|++|-=-+ |..+.||.+--+++++.+=++++.+||+.+..++|+-.
T Consensus 353 lQlrLQqtVEGLSvaAv----sYYVvGLiGYl~K--~~sh~~p~~pevvt~~~VP~av~~vw~~vrRiRr~h~e 420 (424)
T COG4949 353 LQLRLQQTVEGLSVAAV----SYYVVGLIGYLAK--AWSHGWPVDPEVVTGGSVPFAVLGVWWVVRRIRRKHLE 420 (424)
T ss_pred HHHHHHHHhccceehhh----hHHHHHHHHHHHH--HHHhCCCCChhHhhccchhHHHHHHHHHHHHHHHhhcc
Confidence 34444444444555543 3567788888776 66666899999999999999999999999888777653
No 52
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=51.78 E-value=39 Score=32.02 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhh---ccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 019594 226 GGCGVVLTVITGLF---GINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVG 274 (338)
Q Consensus 226 s~IflPlT~ItGif---GMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~ 274 (338)
..|+.|+-.+.+.| |.||.+.|..-.|.-||.+-++++.++ ..++|+.
T Consensus 205 ~iiv~pll~Llv~W~klg~Nv~n~pss~~s~~~Fh~gi~g~~vL-~f~yWlq 255 (287)
T KOG2447|consen 205 GIIVSPLLGLLVLWLKLGANVSNFPSSPTSTLGFHAGIAGILVL-FFVYWLQ 255 (287)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCchhhhhhhHHHHHHHH-HHHHHHH
Confidence 45778887777777 689999996542333444444333332 2244444
No 53
>PRK11677 hypothetical protein; Provisional
Probab=50.88 E-value=56 Score=27.68 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC--CCC-chHHHHHHHHHH
Q 019594 257 GLFTAILFFIGVVLIAVGLLYLGLK--KPI-TEEQVEVRKLEL 296 (338)
Q Consensus 257 ~~~~~imv~i~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 296 (338)
|+++++.+++++++-+++.++...+ +.- .+++.+-.|.||
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAEL 45 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Confidence 4444455555555555555553222 121 256666666666
No 54
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=50.87 E-value=50 Score=26.13 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCchHHHHH
Q 019594 218 VTHNLAVFGGCGVVLTVITGLFGI--NVDGIPGADNTPYAFGLFT 260 (338)
Q Consensus 218 vmk~LTivs~IflPlT~ItGifGM--Nf~~mP~l~~~~~gf~~~~ 260 (338)
+.+.++.++...++..++||+|-+ .++ .+.+-+++||-++..
T Consensus 3 ~~~rFs~~a~~av~~l~~TG~~~a~~~~~-~~~l~~t~yG~~Ll~ 46 (105)
T PF05425_consen 3 VLRRFSWIAWAAVAVLVVTGLVMAWLRLG-FDALFTTPYGRLLLV 46 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chhhccChhHHHHHH
Confidence 345578888888888999998864 323 222222788865443
No 55
>PF14163 SieB: Superinfection exclusion protein B
Probab=50.60 E-value=1.3e+02 Score=25.50 Aligned_cols=36 Identities=11% Similarity=-0.179 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHH
Q 019594 222 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILF 264 (338)
Q Consensus 222 LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv 264 (338)
++..+.+|+|-+++..+.==+|. ..|++|+.+++.+
T Consensus 7 i~~~~llf~P~~~~~~l~l~~~~-------~~y~~~i~~~fl~ 42 (151)
T PF14163_consen 7 IFSGLLLFLPESLLEWLNLDKFE-------IKYQPWIGLIFLF 42 (151)
T ss_pred HHHHHHHHCCHHHHHHhCcchHH-------HhcchHHHHHHHH
Confidence 44455778999998875433433 3455555444433
No 56
>PRK07668 hypothetical protein; Validated
Probab=50.33 E-value=45 Score=31.31 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 019594 222 LAVFGGCGVVLTVITGLFGINV 243 (338)
Q Consensus 222 LTivs~IflPlT~ItGifGMNf 243 (338)
++++..+..|+.++.|+.|-++
T Consensus 105 ~s~~~iig~~~~~~l~i~~~~~ 126 (254)
T PRK07668 105 YSLIQLIGYPISLILTIIGLIF 126 (254)
T ss_pred eeehHHhhHHHHHHHHHHHHHH
Confidence 5666666667777666666443
No 57
>COG3771 Predicted membrane protein [Function unknown]
Probab=49.59 E-value=94 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=14.4
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHH
Q 019594 269 VLIAVGLLYLGLKKPITEEQVEVRKLEL 296 (338)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.++.|+.|++.|-..-.-..|+|+++.
T Consensus 56 gwli~g~fy~k~~l~~~~l~rqiKr~~~ 83 (97)
T COG3771 56 GWLICGLFYLKVRLSLMRLERQIKRLEN 83 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566666555444444455555544
No 58
>PF15212 SPATA19: Spermatogenesis-associated protein 19, mitochondrial
Probab=49.00 E-value=22 Score=28.92 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=25.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhccCCCCCCCc
Q 019594 296 LQELVKKFQHEAETHAQVRKNVRNNLTPTAGD 327 (338)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (338)
+|+|.|| .++|+-+++.+..|.|-||++|.
T Consensus 15 vqhwlkK--teEEASq~IKeKmS~n~~pthg~ 44 (130)
T PF15212_consen 15 VQHWLKK--TEEEASQGIKEKMSTNCPPTHGQ 44 (130)
T ss_pred HHHHHHH--hHhhhhHHHHHHhcCCCCCccCc
Confidence 4778876 67788889999999999999985
No 59
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=48.43 E-value=1.6e+02 Score=24.47 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHL 166 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l 166 (338)
.++.+...+++++.++-..-...+..||. -...+..++..+-.++..+......+.+|...+
T Consensus 34 ~l~kL~~~i~eld~~i~~~v~~~~~~LL~--q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 34 PLKKLNFDIQELDKRIRSQVTSNHEDLLS--QASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777766543222222222 223455555555556656655555566655443
No 60
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=48.36 E-value=1.4e+02 Score=29.90 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Q 019594 222 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRK 293 (338)
Q Consensus 222 LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (338)
+.+++++++.+.++...+++.+..+. ++..+.++.++++++.+.++++..+..+..|++-.+...
T Consensus 400 ~~~~~~i~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~T~~G~~~~~ 464 (511)
T PF09972_consen 400 LIILGIILLILGFILLIVLFIAFNSL-------IFIALGILSIVLIIIGIIALIIFYKVMPRRTPEGAELYA 464 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Confidence 56666666666666554555443222 111111122222222333444444555557766655544
No 61
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=48.27 E-value=44 Score=29.50 Aligned_cols=7 Identities=43% Similarity=0.881 Sum_probs=5.4
Q ss_pred CCCCCCC
Q 019594 244 DGIPGAD 250 (338)
Q Consensus 244 ~~mP~l~ 250 (338)
+|||.++
T Consensus 20 ~gmp~ld 26 (181)
T PRK13454 20 PGMPQLD 26 (181)
T ss_pred CCCCCCc
Confidence 4689887
No 62
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=48.01 E-value=31 Score=38.64 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 019594 227 GCGVVLTVITGLFGINVDG 245 (338)
Q Consensus 227 ~IflPlT~ItGifGMNf~~ 245 (338)
++|+|+.|+.|.-|--|..
T Consensus 444 ~vF~Pl~f~~G~~g~~~~~ 462 (1021)
T PF00873_consen 444 AVFLPLLFMPGIAGQFFRP 462 (1021)
T ss_dssp HHTCGGGGSBHHHHHHHHH
T ss_pred HHhhhhhhcCCchHHHHHH
Confidence 6799999999999998863
No 63
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=46.23 E-value=45 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 019594 214 RSLRVTHNLAVFGGCGVVLTVITGLFGINVD 244 (338)
Q Consensus 214 ~~N~vmk~LTivs~IflPlT~ItGifGMNf~ 244 (338)
|..+-...+++++++++|..-+.|+||...+
T Consensus 7 R~kN~~~w~ali~~i~l~vq~~~~~fg~~~~ 37 (84)
T PF04531_consen 7 RFKNKAFWVALISAILLLVQQVGGLFGWGAD 37 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444455689999999999999999998554
No 64
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.97 E-value=57 Score=33.36 Aligned_cols=30 Identities=23% Similarity=0.109 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 019594 215 SLRVTHNLAVFGGCGVVLTVITGLFGINVD 244 (338)
Q Consensus 215 ~N~vmk~LTivs~IflPlT~ItGifGMNf~ 244 (338)
--.+.-+++++..+..|+|++.|+.|=|-+
T Consensus 396 fgt~v~v~~iw~fv~~PL~~~G~i~GkN~~ 425 (593)
T KOG1277|consen 396 FGTIVVVLLIWLFVISPLTVLGGIAGKNRS 425 (593)
T ss_pred ccchHHHHHHHHHHhchHHHcccccccccc
Confidence 344567899999999999999999999964
No 65
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=45.80 E-value=69 Score=32.61 Aligned_cols=54 Identities=24% Similarity=0.172 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 019594 226 GGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQE 298 (338)
Q Consensus 226 s~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (338)
|..+++.||.+=-||= -.|..- +--|-.+++|+|...+..+ +. +|..||+||-.
T Consensus 291 smWli~iTFlsiGYGD---iVP~Ty-cGr~v~l~tGivGa~~sal--lv-------------AvisRKLeLt~ 344 (489)
T KOG3684|consen 291 SMWLIAITFLSIGYGD---IVPNTY-CGRGVALLTGIVGAGCSSL--LV-------------AVIARKLELTK 344 (489)
T ss_pred hHHHHHHHHhhcccCc---ccCCcc-ccchHHHHhhhhhhhHHHH--HH-------------HHHHHHHHHHH
Confidence 3456667777766772 347655 5556666666654443322 22 45568887744
No 66
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.80 E-value=87 Score=28.53 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 182 AREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGC 228 (338)
Q Consensus 182 ~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~I 228 (338)
+..+.+++.-+|+|=+.+++ .|+++|.-|..|+++|.+
T Consensus 150 ~~sI~~e~~YLr~REeemr~---------~nesTNsrv~~fSi~Sl~ 187 (210)
T KOG1691|consen 150 VESIHEEMYYLREREEEMRN---------TNESTNSRVAWFSILSLV 187 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------hhhhhhhHHHHHHHHHHH
Confidence 44455555555655444444 277888888888887644
No 67
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=44.90 E-value=93 Score=22.42 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Q 019594 256 FGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKK 302 (338)
Q Consensus 256 f~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (338)
|.+..++.+++.++.+..-+++...+.+..+++++-=+..||+.+.-
T Consensus 8 y~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeL 54 (58)
T PF13314_consen 8 YYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIEL 54 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 44433444444444444446666666555555544445555666544
No 68
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=44.86 E-value=1.1e+02 Score=28.24 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594 212 QDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPY--AFGLFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 212 ~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~--gf~~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
|..+...++.+..+ .+|+-++++++..+-=++.+|.+. .-. |..++. +++.+++.++.+++.|+.-
T Consensus 179 n~~~tW~lR~~G~l-lmf~G~~~~~~~l~~l~~~~P~lg-~l~~~~~~~~~-~~~s~~lsl~~Ia~aW~~y 246 (248)
T PF07787_consen 179 NNTLTWILRFIGWL-LMFIGFFLLFSPLYTLVDWIPLLG-NLVGFGLFLVA-FIISFSLSLLTIALAWLFY 246 (248)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhceee-chhhhHHHHHH-HHHHHHHHHHHHHHhheee
Confidence 34455555544444 334446666666666566788776 433 443333 3333444455566666543
No 69
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=44.59 E-value=43 Score=22.79 Aligned_cols=17 Identities=18% Similarity=0.036 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhccCCC
Q 019594 267 GVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 267 ~~~l~~~~~~~~~~~~~ 283 (338)
.++..|+|+.-|.+-+.
T Consensus 15 l~If~~iGl~IyQkikq 31 (49)
T PF11044_consen 15 LGIFAWIGLSIYQKIKQ 31 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677666644433
No 70
>PF15050 SCIMP: SCIMP protein
Probab=44.17 E-value=18 Score=29.99 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=8.3
Q ss_pred CCchHHHHHHHH
Q 019594 252 TPYAFGLFTAIL 263 (338)
Q Consensus 252 ~~~gf~~~~~im 263 (338)
|..-||+++++.
T Consensus 4 Wr~nFWiiLAVa 15 (133)
T PF15050_consen 4 WRDNFWIILAVA 15 (133)
T ss_pred HHhchHHHHHHH
Confidence 556788877754
No 71
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=43.81 E-value=37 Score=28.57 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 019594 217 RVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLG 279 (338)
Q Consensus 217 ~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~ 279 (338)
+.+-.+.+++.+++-..++.+++|+ + + .++....+.+++.+++++...+++.++.
T Consensus 69 ~~~~~~~~l~~~~~~~a~~~~~~~~-----~--~-~~~~~~~~~~~~~~~ag~~~l~~l~~~~ 123 (172)
T PF13903_consen 69 RATIAFLILGLLLLLFAFVFALIGF-----C--K-RSYTLYLFAGILFILAGLCILIALIVFV 123 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----h--c-cccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555554433 1 1 2333333344555556666666655553
No 72
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=42.64 E-value=1e+02 Score=30.64 Aligned_cols=51 Identities=20% Similarity=0.051 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhh---hccCCCCCCCCCCCCchHHHHH-H-HHHHHHHHHHHHHHHH
Q 019594 220 HNLAVFGGCGVVLTVITGL---FGINVDGIPGADNTPYAFGLFT-A-ILFFIGVVLIAVGLLY 277 (338)
Q Consensus 220 k~LTivs~IflPlT~ItGi---fGMNf~~mP~l~~~~~gf~~~~-~-imv~i~~~l~~~~~~~ 277 (338)
-.+.++++...-..+..|+ .|||=+ .+||+|++. . ..+.++++.+.++...
T Consensus 23 ~~l~~~g~~~~~~~~~~Glg~vtg~~~~-------~~WGl~I~~y~~~~vglaag~~~is~~~ 78 (394)
T PRK10881 23 GPLIVICMLLIVKRFVFGLGSVSNLNGG-------YPWGIWIAFDVLIGTGFACGGWALAWLV 78 (394)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCCCC-------CCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445565654 566553 789999885 3 2334555555544444
No 73
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=42.26 E-value=38 Score=27.93 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 019594 221 NLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGV 268 (338)
Q Consensus 221 ~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~ 268 (338)
+..++|.++.-.|+|.|++ |+..| -+ -.+=|++++++++.++.
T Consensus 33 iiG~vT~l~VLvtii~afv---f~~~~-p~-p~~iffavcI~l~~~s~ 75 (118)
T PF10856_consen 33 IIGAVTSLFVLVTIISAFV---FPQDP-PK-PLHIFFAVCILLICISA 75 (118)
T ss_pred ehHHHHHHHHHHHHhheEE---ecCCC-CC-ceEEehHHHHHHHHHHH
Confidence 4556666666668887765 44333 11 22345555555544443
No 74
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=41.02 E-value=87 Score=27.15 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC-----------CCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHH
Q 019594 220 HNLAVFGGCGVVLTVITGLFGINVDGIPGADN-----------TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQ 288 (338)
Q Consensus 220 k~LTivs~IflPlT~ItGifGMNf~~mP~l~~-----------~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~ 288 (338)
.+||+++=+..---|.-|+++| +.+=|-... |.-.++++++++-. .+++.|.-+.++++++ |.-
T Consensus 19 ~~lT~~aW~gfi~l~~~~~~~~-~~~~~~~gp~~~~~~~~s~~~tl~~yl~ial~nA-vlLI~WA~YN~~RF~~---eRR 93 (153)
T PRK14584 19 IILTALAWFGFLFLLVRGLLEM-ISRAPHMGPIPLRIYILSGLTTIALYLAIAAFNA-VLLIIWAKYNQVRFQV---ERR 93 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccCcccCCcchhHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc---ccc
Confidence 3577777777777788898888 432221100 01112222222111 1223344445555543 333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 019594 289 VEVRKLELQELVKKFQHEAETHAQVRKN 316 (338)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (338)
.-...++.+|.-.-|.=..|.-+++|+.
T Consensus 94 ~~~~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 94 GHRPDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCCCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4445667778888888888888888874
No 75
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=40.91 E-value=96 Score=27.67 Aligned_cols=54 Identities=17% Similarity=0.069 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHH-HhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 019594 221 NLAVFGGCGVVLTVI-TGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLG 279 (338)
Q Consensus 221 ~LTivs~IflPlT~I-tGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~ 279 (338)
+|++++++.+-.+++ +|-.+=+-. -|+. .+|++++.+..++++. .++++++|-+
T Consensus 27 vLgvVs~~iL~F~~~~~~~~~~~~~-~~G~---~~gl~~a~~gl~~l~~-si~~~fry~R 81 (183)
T PF12263_consen 27 VLGVVSAVILLFANLFSGRATSPNR-NPGL---GIGLFLAICGLVALFF-SIFWSFRYTR 81 (183)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCc-CCCc---chHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 588888777766653 222221111 2333 4676665555444433 4566666653
No 76
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=40.34 E-value=60 Score=29.76 Aligned_cols=46 Identities=9% Similarity=-0.198 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 019594 222 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVG 274 (338)
Q Consensus 222 LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~ 274 (338)
..+.+.-+.|.+.++-.=|.=|+ .-+|+++.++...+-+.+.++++
T Consensus 58 ~l~~~~~~iP~~il~l~~g~ifG-------~~~G~~~s~~G~~~gs~~~Fll~ 103 (223)
T COG0398 58 YLVATLPIIPGSILTLAGGLLFG-------PFLGFLYSLIGATAGSTLAFLLA 103 (223)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777776676665 34688888887777666666665
No 77
>PRK10633 hypothetical protein; Provisional
Probab=38.18 E-value=1.9e+02 Score=22.33 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 224 VFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 224 ivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
.++.+.+..-.++++.+=|- |+.-.-|-.|+..|++.-++..++.++..++..+-=+
T Consensus 17 ~L~l~y~~~W~~~aY~~~~~---~~i~GlP~WF~~sCi~~p~lfi~l~~~~Vk~vFkDi~ 73 (80)
T PRK10633 17 GLTLLYLAAWLVAAYLPGNA---PGFTGLPHWFEMACLLLPLLFILLCWLMVKFIFRDIP 73 (80)
T ss_pred HHHHHHHHHHHHHHhccCCC---CcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444445555555533333 3322256677777876555555555555544443333
No 78
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=38.10 E-value=2e+02 Score=22.57 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCchHH
Q 019594 257 GLFTAILFFIGVVLIAVGLLYLGLKKPITEEQ 288 (338)
Q Consensus 257 ~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~ 288 (338)
|...+.+.+++.++-++|=.++..|||-+=++
T Consensus 44 ~~~~l~~~~~g~~~q~~GH~~~E~~~Pa~~~~ 75 (95)
T PF06127_consen 44 WWLALAVFVVGWGLQFIGHFFFEKNKPAFFDN 75 (95)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCCCcchhc
Confidence 33444556667778888988899999966444
No 79
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=37.93 E-value=1.6e+02 Score=26.05 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=32.7
Q ss_pred hccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 019594 239 FGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL 278 (338)
Q Consensus 239 fGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~ 278 (338)
|=||+.|=|... ||--.++..=++++.+++...+|+.+.
T Consensus 79 yP~~iGGKP~~S-~Pafipi~FEltVL~aa~~~~~g~l~~ 117 (173)
T PF11821_consen 79 YPLNIGGKPLFS-WPAFIPITFELTVLFAALGTVLGMLIL 117 (173)
T ss_pred cceecCCCCCCC-CcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999988 887778777788888888888888776
No 80
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=37.92 E-value=52 Score=29.64 Aligned_cols=77 Identities=9% Similarity=-0.059 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 019594 219 THNLAVFGGCGVVLTVITGLFGINVDGIPGADN--TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLEL 296 (338)
Q Consensus 219 mk~LTivs~IflPlT~ItGifGMNf~~mP~l~~--~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+..++.+..++-|..+++|.||| .+-+|..+. ++--.+.....+.++++.++.....|..+..++.-=||..|.-|.
T Consensus 37 v~N~S~l~~vyG~~l~~~~~~~~-~~~~~~~~~~~y~~~~~~l~~~la~l~~m~f~~~~~~ivk~GHvP~LDv~~R~yD~ 115 (196)
T PF06770_consen 37 VFNCSGLVFVYGPLLLLVTTWGV-YKITSKMRSNFYMKIIIPLVNSLAMLCWMLFVCFQPWIVKYGHVPALDVLYRDYDR 115 (196)
T ss_pred cEeehHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhhhcCC
Confidence 34477778889999999999999 111243320 111112222222233333333333556666666666666665554
No 81
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=37.48 E-value=26 Score=32.83 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 019594 221 NLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK 281 (338)
Q Consensus 221 ~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~ 281 (338)
.+.+++++|+-..+ ||.+.-..-.+ ..-|.|+++++++++++++..=++.|+.+|
T Consensus 200 ~f~llgllfliiai-----gltvGT~~~A~-~~~giY~~wv~~~l~a~~~~~rs~yy~~mk 254 (256)
T PF09788_consen 200 IFFLLGLLFLIIAI-----GLTVGTWTYAK-TYGGIYVSWVGLFLIALICLIRSIYYCCMK 254 (256)
T ss_pred HHHHHHHHHHHHHH-----HHhhhhHHHHh-hcCcEeHHHHHHHHHHHHHHHHhheeEEEe
Confidence 46666666654433 44444223333 445677788888888888888888887765
No 82
>PRK02935 hypothetical protein; Provisional
Probab=37.39 E-value=72 Score=25.90 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=6.1
Q ss_pred CCCchHHHHH
Q 019594 282 KPITEEQVEV 291 (338)
Q Consensus 282 ~~~~~~~~~~ 291 (338)
...|.++|||
T Consensus 62 GmlStkavqV 71 (110)
T PRK02935 62 GMLSTKAVQV 71 (110)
T ss_pred hhhcccceee
Confidence 3556666665
No 83
>PRK03001 M48 family peptidase; Provisional
Probab=37.32 E-value=1.7e+02 Score=27.50 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 019594 220 HNLAVFGGCGVVLTVITGLFG 240 (338)
Q Consensus 220 k~LTivs~IflPlT~ItGifG 240 (338)
|.+-+.++++.++-.+.-++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (283)
T PRK03001 5 KTAMLMAAITALFIVIGGMIG 25 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444454444444444
No 84
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.05 E-value=1.9e+02 Score=29.78 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=16.6
Q ss_pred HHHHHHH--HHHHHhhhhhHhHHHHHHHHHHHH
Q 019594 85 HEVIAHL--ACRLSRWDDRLFRKTIFGAADEIE 115 (338)
Q Consensus 85 ~~ll~~L--l~~l~d~~~~~~~~~i~~~ld~LE 115 (338)
.+|..++ =+..++.+.. .+++|.+++.+|.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~-ri~~i~e~v~eLq 368 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRI-RINAIGERVTELQ 368 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444432 2334555555 5677777777666
No 85
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.91 E-value=24 Score=29.33 Aligned_cols=6 Identities=0% Similarity=0.047 Sum_probs=2.3
Q ss_pred chHHHH
Q 019594 254 YAFGLF 259 (338)
Q Consensus 254 ~gf~~~ 259 (338)
|.+|++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 334433
No 86
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.
Probab=36.78 E-value=2.3e+02 Score=28.39 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----CCCCCCCCCCchHHHHHHHHHHHHHHHHHH-----HHHHhccCC
Q 019594 213 DRSLRVTHNLAVFGGCGVVLTVITGLFGINV-----DGIPGADNTPYAFGLFTAILFFIGVVLIAV-----GLLYLGLKK 282 (338)
Q Consensus 213 ~~~N~vmk~LTivs~IflPlT~ItGifGMNf-----~~mP~l~~~~~gf~~~~~imv~i~~~l~~~-----~~~~~~~~~ 282 (338)
.++|+.++.|+ .+.+|-.++-..|-+=+ ..+|... .++.+ -.++..+.++-++|-. ++.-|++-=
T Consensus 111 ~~l~~sfrlLa---~~vLPcf~~e~~~ki~~~~~~~~~~P~~~-~~~~~-~sva~~l~l~SW~YrT~ifl~~CvLFrLiC 185 (398)
T PF12056_consen 111 RQLNRSFRLLA---CWVLPCFLVEAAYKIWWYSSVAVQIPYIG-HPSWW-NSVACLLELASWLYRTTIFLLVCVLFRLIC 185 (398)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHheEEeeccccCCccC-CccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777764 45788877777665532 2367655 33222 2222222223333333 333334322
Q ss_pred CCchHHHHHHHHHHHHHHHHhHHHH------HHHHHHhhhhc
Q 019594 283 PITEEQVEVRKLELQELVKKFQHEA------ETHAQVRKNVR 318 (338)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 318 (338)
. .+-+-++++-|.|++++ ++|-.+|+..+
T Consensus 186 ~-------LQiLr~~~~~klfe~~sdv~~il~EH~RiR~qL~ 220 (398)
T PF12056_consen 186 N-------LQILRFEGYAKLFERDSDVGVILEEHLRIRRQLS 220 (398)
T ss_pred H-------HhheehHhHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 1 23455589999998876 46777777543
No 87
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=36.64 E-value=95 Score=24.49 Aligned_cols=11 Identities=27% Similarity=0.033 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 019594 222 LAVFGGCGVVL 232 (338)
Q Consensus 222 LTivs~IflPl 232 (338)
+.+++++++.+
T Consensus 21 ~~~~~i~~~~~ 31 (112)
T PF14015_consen 21 LRIASIILSVL 31 (112)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 88
>PRK06041 flagellar assembly protein J; Reviewed
Probab=36.19 E-value=5.3e+02 Score=27.01 Aligned_cols=18 Identities=22% Similarity=0.001 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019594 189 QEAVRGRLFTIQDVMQST 206 (338)
Q Consensus 189 l~~~re~l~~l~d~~~s~ 206 (338)
.+...+.++.+.|.|-+.
T Consensus 179 ~~~~le~L~~~~E~Yvt~ 196 (553)
T PRK06041 179 YERALYSLDVWKDLYVSL 196 (553)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444455555444
No 89
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=35.86 E-value=2.4e+02 Score=23.01 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHH
Q 019594 224 VFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFI 266 (338)
Q Consensus 224 ivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i 266 (338)
+.+.+++-......+.+.+++..+...-.|-.|+..+++..++
T Consensus 5 i~~~~~~~~~~~~~~~a~~~~~~~~~~~gp~~fP~~l~~~l~~ 47 (141)
T PF07331_consen 5 IIGLVFLAFGAVFLYQAFQIPSFPSGSPGPGFFPRLLGILLLI 47 (141)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCChHHHHHHHHHHHH
Confidence 4566666667777777766653332221355677665544333
No 90
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=35.79 E-value=2e+02 Score=22.03 Aligned_cols=29 Identities=10% Similarity=-0.069 Sum_probs=15.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594 252 TPYAFGLFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 252 ~~~gf~~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
-|-.|+..|++..++..++.++..+++.+
T Consensus 42 lPlWF~~SCi~~~il~~~l~~~~vk~~Fk 70 (80)
T PF06196_consen 42 LPLWFFYSCIGGPILFIILVWLMVKFFFK 70 (80)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666665555555555555444443
No 91
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=35.16 E-value=1.5e+02 Score=28.30 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 019594 211 LQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVD 244 (338)
Q Consensus 211 ~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~ 244 (338)
.|-+.-+.++.++++..+|.-...+++++...|.
T Consensus 227 ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~ 260 (324)
T PF10292_consen 227 ENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFN 260 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677778888899999999999999988888775
No 92
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=34.65 E-value=2.7e+02 Score=23.13 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=7.3
Q ss_pred HHHHhhhccCCC
Q 019594 233 TVITGLFGINVD 244 (338)
Q Consensus 233 T~ItGifGMNf~ 244 (338)
.|+.+++++|++
T Consensus 83 lf~~~~~~~~~~ 94 (130)
T PF11026_consen 83 LFLSALLSIDLS 94 (130)
T ss_pred HHHHHHHccchH
Confidence 455666766654
No 93
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=34.63 E-value=1.4e+02 Score=26.56 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC-----CCchHHHHHHHHHHHHHHHHHHHHHHh
Q 019594 215 SLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADN-----TPYAFGLFTAILFFIGVVLIAVGLLYL 278 (338)
Q Consensus 215 ~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~-----~~~gf~~~~~imv~i~~~l~~~~~~~~ 278 (338)
.|-.--....++++..-++-+.+++|+|+ +|..+. -|-|-....=..+.+.+.++.|..++|
T Consensus 17 SN~~wa~ii~~G~lGFll~G~sSYl~~nl--l~~~~~~~i~FiPQGivM~FYGi~gl~ls~Ylw~tI~w 83 (180)
T PF02392_consen 17 SNYFWAFIIFLGGLGFLLVGISSYLGKNL--LPFSDSSQIPFIPQGIVMCFYGIAGLFLSFYLWLTIFW 83 (180)
T ss_pred HHHHHHHHHHHhhHHHHHhHHHHHhCCCc--cccCCcceeeEECccHHHHHHHHHHHHHHHHHhhheeE
Confidence 34333445666788888899999999998 465541 256655444445555555666777766
No 94
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=34.43 E-value=55 Score=35.96 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 019594 253 PYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKL 294 (338)
Q Consensus 253 ~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 294 (338)
+|+-|+++++.++.+++.++++++.| +++|..++. +++
T Consensus 31 ~~~~~~~l~~~~~a~~~al~~~lrrf---r~Pt~~ea~-~RL 68 (820)
T PF13779_consen 31 DWLRWALLAAFAAAALAALVRGLRRF---RWPTRAEAL-RRL 68 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCHHHHH-HHH
Confidence 34555555554444444444444443 455655544 444
No 95
>PRK00523 hypothetical protein; Provisional
Probab=33.26 E-value=1.3e+02 Score=22.71 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=7.1
Q ss_pred ccCCCCchHHH
Q 019594 279 GLKKPITEEQV 289 (338)
Q Consensus 279 ~~~~~~~~~~~ 289 (338)
....|++|+.+
T Consensus 35 ~~NPpine~mi 45 (72)
T PRK00523 35 RENPPITENMI 45 (72)
T ss_pred HHCcCCCHHHH
Confidence 44567777765
No 96
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=33.22 E-value=3.5e+02 Score=23.98 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHhccCCCCchHHHHHHHHHH
Q 019594 257 GLFTAILFFIGVVLIAV-----GLLYLGLKKPITEEQVEVRKLEL 296 (338)
Q Consensus 257 ~~~~~imv~i~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
.++++++.+.|+++-|+ |=..|++.+.-..++.+.|+-||
T Consensus 77 ~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF 121 (173)
T PF08566_consen 77 FMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEF 121 (173)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45556655555555443 33445555554445555555554
No 97
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=32.49 E-value=54 Score=28.45 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 253 PYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 253 ~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
.||-+++=++.++++++.+..++.-...|+.
T Consensus 6 ~yglFlaK~vTvVvaI~~vv~~I~~~~~k~k 36 (155)
T PF08496_consen 6 EYGLFLAKIVTVVVAILAVVGLIVAAAQKKK 36 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4777777777777777777777776666666
No 98
>COG4881 Predicted membrane protein [Function unknown]
Probab=32.13 E-value=72 Score=30.62 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 019594 212 QDRSLRVTHNLAVFGGCGVVLTVITGLFGINVD 244 (338)
Q Consensus 212 ~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~ 244 (338)
-++..++||+|+++.++. ..+-++++||=+.
T Consensus 154 ~erlr~~~KiLaii~vil--~alw~iYp~~Ll~ 184 (371)
T COG4881 154 VERLRRVVKILAIIGVIL--AALWHIYPDILLA 184 (371)
T ss_pred chhHHHHHHHHHHHHHHH--HHHHHhchHHHHH
Confidence 467888888887766543 3566777888664
No 99
>PRK01844 hypothetical protein; Provisional
Probab=31.38 E-value=1.5e+02 Score=22.44 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=7.4
Q ss_pred ccCCCCchHHHH
Q 019594 279 GLKKPITEEQVE 290 (338)
Q Consensus 279 ~~~~~~~~~~~~ 290 (338)
....|++|+.+.
T Consensus 34 k~NPpine~mir 45 (72)
T PRK01844 34 QKNPPINEQMLK 45 (72)
T ss_pred HHCCCCCHHHHH
Confidence 445577777653
No 100
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=31.36 E-value=1.9e+02 Score=20.81 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=5.9
Q ss_pred HHHHhhhccCC
Q 019594 233 TVITGLFGINV 243 (338)
Q Consensus 233 T~ItGifGMNf 243 (338)
+|=+=+|||+.
T Consensus 37 SFasfLYGl~m 47 (58)
T PF08653_consen 37 SFASFLYGLNM 47 (58)
T ss_pred HHHHHHHHHHH
Confidence 44444566654
No 101
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=31.27 E-value=5.4e+02 Score=29.79 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 019594 285 TEEQVEVRKLELQELVKKF 303 (338)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ 303 (338)
.+.++..++.|.++..++-
T Consensus 1420 ~~~~l~~~~ae~eq~~~~v 1438 (1758)
T KOG0994|consen 1420 ADTQLRSKLAEAEQTLSMV 1438 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555666666666665543
No 102
>PRK09458 pspB phage shock protein B; Provisional
Probab=30.63 E-value=2.4e+02 Score=21.43 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCC---CchHH
Q 019594 255 AFGLFTAILFFIGVVLIAVGLLYLGLKKP---ITEEQ 288 (338)
Q Consensus 255 gf~~~~~imv~i~~~l~~~~~~~~~~~~~---~~~~~ 288 (338)
.|.++-.+++++-++.+|+.+=|-.++|. .|+++
T Consensus 4 ~fl~~PliiF~ifVaPiWL~LHY~sk~~~~~~Ls~~d 40 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLWLHYRSKRQGSQGLSQEE 40 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhcccccCCCCCCHHH
Confidence 34444445555555666776666655553 55443
No 103
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=30.53 E-value=4.3e+02 Score=25.31 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 019594 215 SLRVTHNLAVFGGCGVVLTVITGLF 239 (338)
Q Consensus 215 ~N~vmk~LTivs~IflPlT~ItGif 239 (338)
...=++.++.++.++.-+.++.|+|
T Consensus 227 s~~Plr~~~~~g~~~~~~~~~~~~~ 251 (325)
T PRK10714 227 TTTPLRLLSLLGSIIAIGGFSLAVL 251 (325)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677888888888777777765
No 104
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.88 E-value=76 Score=26.42 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 019594 256 FGLFTAILFFIGV 268 (338)
Q Consensus 256 f~~~~~imv~i~~ 268 (338)
.++++++|+.+.+
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 4555555554433
No 105
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=29.66 E-value=1.4e+02 Score=33.19 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 149 KWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGC 228 (338)
Q Consensus 149 rr~l~~~~~vi~~L~~~l~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~I 228 (338)
+......++-+.++.+.++..-...-.-|=.+-+++.++.+..-.=.-..+.-.+.... =+|- .-++++++
T Consensus 296 ~~V~~aV~~kl~elk~~LP~gVki~~~ydRs~lid~AI~tv~k~LiEg~vlV~iVl~lF------Lgn~---RsAli~~~ 366 (1027)
T COG3696 296 REVIAAVKEKLEELKKSLPEGVKIVTTYDRSELIDKAIDTVSKTLIEGSVLVIIVLALF------LGNF---RSALIVII 366 (1027)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEEEeeHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------hccH---HHHHHHHH
Q ss_pred HHHHHHHHhhhccCCCCCCC
Q 019594 229 GVVLTVITGLFGINVDGIPG 248 (338)
Q Consensus 229 flPlT~ItGifGMNf~~mP~ 248 (338)
.+||++..++-+||+-+++.
T Consensus 367 ~lPLS~li~f~~M~~~gi~~ 386 (1027)
T COG3696 367 SLPLSLLIAFIVMNFFGISA 386 (1027)
T ss_pred HHHHHHHHHHHHHHHcCCcc
No 106
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=29.64 E-value=58 Score=25.96 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 019594 258 LFTAILFFIGVVLIAVGLLYLGLKKPIT 285 (338)
Q Consensus 258 ~~~~imv~i~~~l~~~~~~~~~~~~~~~ 285 (338)
..+++.+++.+..+.+.+.|||.|...|
T Consensus 8 l~l~g~llligftivvl~vyfgrk~yls 35 (126)
T PF13120_consen 8 LLLIGTLLLIGFTIVVLLVYFGRKFYLS 35 (126)
T ss_pred HHHHHHHHHHHHHHHhhhheecceeeee
Confidence 3344445555566778889999988765
No 107
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=29.44 E-value=1.8e+02 Score=23.47 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=6.4
Q ss_pred chHHHHHHHHHHHHH
Q 019594 254 YAFGLFTAILFFIGV 268 (338)
Q Consensus 254 ~gf~~~~~imv~i~~ 268 (338)
|++..+.++++++++
T Consensus 4 ~~~~~l~~lvl~L~~ 18 (110)
T PF10828_consen 4 YIYIALAVLVLGLGG 18 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444333333
No 108
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=29.42 E-value=58 Score=28.74 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 019594 222 LAVFGGCGVVLTVI 235 (338)
Q Consensus 222 LTivs~IflPlT~I 235 (338)
+--++.+++.++|+
T Consensus 81 fmP~alv~lv~~~v 94 (170)
T PF11241_consen 81 FMPVALVLLVLSFV 94 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 109
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=29.34 E-value=3.6e+02 Score=24.75 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHhhh
Q 019594 297 QELVKKFQHEAETHAQVRKN 316 (338)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~ 316 (338)
++|+.- ..|+|+|+-.+.+
T Consensus 174 kk~i~s-~DEgEk~i~y~~~ 192 (248)
T PF11368_consen 174 KKWIES-CDEGEKQINYEAS 192 (248)
T ss_pred HHHHHh-CCHHHHHHHHHHH
Confidence 455654 4788888766553
No 110
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=29.28 E-value=61 Score=28.40 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 254 YAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 254 ~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
-+++++++++ ++++.|+.++.+++||+
T Consensus 96 R~~~Vl~g~s---~l~i~yfvir~~R~r~~ 122 (163)
T PF06679_consen 96 RALYVLVGLS---ALAILYFVIRTFRLRRR 122 (163)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence 4555555544 55566888899988885
No 111
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=29.03 E-value=7.6e+02 Score=26.67 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=7.7
Q ss_pred HHHHhhhhccCC
Q 019594 310 HAQVRKNVRNNL 321 (338)
Q Consensus 310 ~~~~~~~~~~~~ 321 (338)
.+|+|..++..+
T Consensus 373 ~q~lr~sis~~~ 384 (683)
T PF08580_consen 373 SQQLRDSISSIL 384 (683)
T ss_pred cccccccccccc
Confidence 567777777433
No 112
>COG4499 Predicted membrane protein [Function unknown]
Probab=28.95 E-value=2.8e+02 Score=27.81 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHH
Q 019594 186 IEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFF 265 (338)
Q Consensus 186 ~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~ 265 (338)
+-+.+.+.+.++.+.+.++-. .+..|+ |...+|-.. |..-=|+.+|+.++
T Consensus 181 il~a~Tld~l~e~i~e~~~kE-----~e~~~k------------------------n~a~VpK~k-~~ifk~~giGliil 230 (434)
T COG4499 181 ILDAETLDDLAEFIDEEYQKE-----TEKINK------------------------NYAFVPKKK-YTIFKYFGIGLIIL 230 (434)
T ss_pred HhhhhhHHHHHHHHHHHHHHH-----HHHHhc------------------------ceeeccccc-ceehhhHHHhHHHH
Confidence 334455666666666666544 345555 677789766 55445777777777
Q ss_pred HHHHHHHHHHHHhccC
Q 019594 266 IGVVLIAVGLLYLGLK 281 (338)
Q Consensus 266 i~~~l~~~~~~~~~~~ 281 (338)
++.+++|+.+.||...
T Consensus 231 lvl~li~~~Y~~f~~~ 246 (434)
T COG4499 231 LVLLLIYFTYYYFSNQ 246 (434)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 7777888777777543
No 113
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.90 E-value=1.5e+02 Score=30.68 Aligned_cols=62 Identities=26% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCC--------------CCCCCC-------------------------------
Q 019594 218 VTHNLAVFGGCGVVLTVITGLFGINVDGI--------------PGADNT------------------------------- 252 (338)
Q Consensus 218 vmk~LTivs~IflPlT~ItGifGMNf~~m--------------P~l~~~------------------------------- 252 (338)
+..++.++-.|.+|+++++|++|.-.... |... |
T Consensus 369 ~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~-~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W 447 (521)
T PF02990_consen 369 ILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQP-WYLSPFFSILIGGILPFGAIFIELYFIFSSLW 447 (521)
T ss_pred HHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCc-cccCCccceeecchHHHHHHHHHHHHHHHHhh
Q ss_pred ------CchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594 253 ------PYAFGLFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 253 ------~~gf~~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
.|||..+..++.++..+.+.+.+-|+.+
T Consensus 448 ~~~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L 481 (521)
T PF02990_consen 448 SNKFYYLFGFLLLVFILLIITCAEVSIILTYFQL 481 (521)
T ss_pred cCcceEEehHHHHHHHHHHHHHHHHHHHHHHHHH
No 114
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=28.63 E-value=3.9e+02 Score=23.15 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 019594 139 RRLSRQVI 146 (338)
Q Consensus 139 ~~LRr~l~ 146 (338)
..|++.+-
T Consensus 8 ~~L~~~L~ 15 (181)
T PF08006_consen 8 NELEKYLK 15 (181)
T ss_pred HHHHHHHH
Confidence 34454443
No 115
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.45 E-value=3.6e+02 Score=22.79 Aligned_cols=12 Identities=67% Similarity=0.864 Sum_probs=8.4
Q ss_pred HHHHHHhHHHHH
Q 019594 297 QELVKKFQHEAE 308 (338)
Q Consensus 297 ~~~~~~~~~~~~ 308 (338)
+|+++-|-+.||
T Consensus 55 qel~~HFa~sAe 66 (138)
T COG3105 55 QELVKHFARSAE 66 (138)
T ss_pred HHHHHHHHHHHH
Confidence 356777777776
No 116
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=28.22 E-value=3e+02 Score=26.15 Aligned_cols=53 Identities=26% Similarity=0.479 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 019594 211 LQDRSLRVTHNLAVFGGCGV---VLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVL 270 (338)
Q Consensus 211 ~~~~~N~vmk~LTivs~Ifl---PlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l 270 (338)
|..|-++ +||++.... .+|++++.+|+-.++++-- .|-|++..++.++.++-+
T Consensus 92 mAmr~~R----~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr---~~T~~~~t~LF~iFGlkm 147 (294)
T KOG2881|consen 92 MAMRYPR----LTVFSGAMSALALMTILSVLLGWAAPNLIPR---KYTYYLATALFLIFGLKM 147 (294)
T ss_pred HHhhccc----hhHHHHHHHHHHHHHHHHHHHHHhhhhhchH---HHHHHHHHHHHHHHHHHH
Confidence 4556666 566654433 3588889999987555532 355666555555554433
No 117
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=28.14 E-value=2.8e+02 Score=24.03 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=4.5
Q ss_pred CCCCCCC
Q 019594 244 DGIPGAD 250 (338)
Q Consensus 244 ~~mP~l~ 250 (338)
+|||-++
T Consensus 7 ~~~~~l~ 13 (173)
T PRK13460 7 KGLSLLD 13 (173)
T ss_pred CCCCccC
Confidence 4677666
No 118
>COG5546 Small integral membrane protein [Function unknown]
Probab=27.96 E-value=89 Score=23.73 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 019594 218 VTHNLAVFGGCGVVLTVITGLFGI 241 (338)
Q Consensus 218 vmk~LTivs~IflPlT~ItGifGM 241 (338)
-....+++++||+-..=+.|+||.
T Consensus 11 kvf~vail~~ifllAQqll~~fGI 34 (80)
T COG5546 11 KVFLVAILGAIFLLAQQLLGWFGI 34 (80)
T ss_pred ceehHHHHHHHHHHHHHHHHHeee
Confidence 344578999999999999999994
No 119
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=27.79 E-value=66 Score=25.81 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=5.6
Q ss_pred chHHHHHHHHH
Q 019594 254 YAFGLFTAILF 264 (338)
Q Consensus 254 ~gf~~~~~imv 264 (338)
|.||+++++++
T Consensus 22 w~FWlv~~lii 32 (102)
T PF11669_consen 22 WYFWLVWVLII 32 (102)
T ss_pred HHHHHHHHHHH
Confidence 45665544443
No 120
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=27.61 E-value=34 Score=28.91 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 019594 216 LRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL 278 (338)
Q Consensus 216 N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~ 278 (338)
.+..+.+.++|.++.-+.++.++.||.-....+.. .. .+++.+++++...++..+|
T Consensus 70 ~~a~r~l~i~s~il~~l~~~l~~~g~~~~~~~~~~-~~------ag~l~~~agl~~l~~~~~y 125 (166)
T PF00822_consen 70 LQAARALMILSIILGFLGLILALFGLCCTKRGPRP-KV------AGILFILAGLCLLIAVSWY 125 (166)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccccCCCC-Cc------ceeeeHHHhhhhheeEEEE
Confidence 45566788999999999999999999774333322 12 3344444555555555555
No 121
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=27.37 E-value=2.9e+02 Score=23.90 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC-chHHHHHHHHHHHHHH
Q 019594 198 TIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTP-YAFGLFTAILFFIGVV 269 (338)
Q Consensus 198 ~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~-~gf~~~~~imv~i~~~ 269 (338)
.+.+.+.... -.++.+++.+.-+++|--|..+-++.|++=++-+ |.-- +- -.||....+.-+++++
T Consensus 48 ~li~Ly~~~t---y~k~~~k~l~kt~~iSF~~avLGiifgI~~qll~--~Wsl-siM~wYWll~LlLyl~tii 114 (161)
T PF13042_consen 48 ILIDLYCKNT---YDKKFSKVLIKTNVISFNFAVLGIIFGIIHQLLG--KWSL-SIMMWYWLLILLLYLITII 114 (161)
T ss_pred HHHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhh-HHHHHHHHHHHHHHHHHHH
Confidence 3455555443 2567777778888999999999999999988876 4322 12 2355555555554443
No 122
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.17 E-value=3.2e+02 Score=24.77 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=26.6
Q ss_pred HHHHhhhcc-CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594 233 TVITGLFGI-NVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 233 T~ItGifGM-Nf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
++..|+||- |+--.|-++ +.++.+++.++++++++. ..+.+..+
T Consensus 24 ~~~~~i~~~ln~~f~P~i~--~~~p~lvilV~avi~gl~--~~i~~~~l 68 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLS--PLPPHLVILVAAVITGLY--ITILQKLL 68 (201)
T ss_pred HHHHHHHHHHHHHHhhhcc--ccccHHHHHHHHHHHHHH--HHHHHHHh
Confidence 555666654 666678886 577777776666665533 34444433
No 123
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.06 E-value=54 Score=24.59 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=10.4
Q ss_pred HHhccCCCCchHHHHH
Q 019594 276 LYLGLKKPITEEQVEV 291 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~ 291 (338)
.+++...|++|+.+.+
T Consensus 31 k~lk~NPpine~~iR~ 46 (71)
T COG3763 31 KQLKDNPPINEEMIRM 46 (71)
T ss_pred HHHhhCCCCCHHHHHH
Confidence 3456667788887643
No 124
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=26.96 E-value=19 Score=37.89 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=37.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH-HHHHHhHHHHHH
Q 019594 252 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQ-ELVKKFQHEAET 309 (338)
Q Consensus 252 ~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 309 (338)
-+.-.|+++|+.+-++++++++.++||.+-+. .|+||| |-+..+|.++.-
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk--------~K~eFqpDa~~niqqR~K~ 315 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIIIILYWKLCRK--------NKLEFQPDAMSNIQQRQKP 315 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHHHHHHHHhcc--------cccCCCchhhhhccccccc
Confidence 45678888888888888888888999988777 677775 556666655543
No 125
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=26.91 E-value=1.7e+02 Score=20.41 Aligned_cols=40 Identities=8% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 019594 224 VFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVV 269 (338)
Q Consensus 224 ivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~ 269 (338)
-++.+..-.....|+|= +|..- |.-||+....++.+.+.+
T Consensus 6 ~~~f~i~~~~~~iGl~~-----~~~~l-~~KGy~~~~~l~~l~s~~ 45 (53)
T PF05360_consen 6 WISFGISIVLMLIGLWN-----APLDL-SEKGYYAMGLLFLLFSAF 45 (53)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHHHHHHHH
Confidence 33444444566778883 34334 677999888877776654
No 126
>PRK14622 hypothetical protein; Provisional
Probab=26.81 E-value=1.8e+02 Score=23.33 Aligned_cols=7 Identities=57% Similarity=1.161 Sum_probs=4.1
Q ss_pred ccCCCCC
Q 019594 240 GINVDGI 246 (338)
Q Consensus 240 GMNf~~m 246 (338)
|||++||
T Consensus 95 g~~lPG~ 101 (103)
T PRK14622 95 GIKIPGI 101 (103)
T ss_pred CCCCCCC
Confidence 7775443
No 127
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=26.75 E-value=2.1e+02 Score=25.45 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=33.1
Q ss_pred CCchHHHHHH----HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 019594 252 TPYAFGLFTA----ILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVR 314 (338)
Q Consensus 252 ~~~gf~~~~~----imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (338)
|-.+||--+- -++..|++++.+++.|++.=.|.++.. ++....++.+++..+-|.
T Consensus 24 ~~~~~W~~ls~REq~ll~~~g~vL~l~i~Y~~iWqPl~~~~--------~~a~~~l~~~~qll~wvq 82 (178)
T PRK09731 24 WLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERI--------EQQETMLQQLVAMNTRLK 82 (178)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 5566664433 245556667778888999999988633 333444555555554443
No 128
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=26.68 E-value=5.1e+02 Score=23.91 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCCCCCCc
Q 019594 253 PYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGD 327 (338)
Q Consensus 253 ~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (338)
.|-||+++++++.+.+.+++++ ..+++.-|.+...+==-.+..-.++|++-.-.- |.+.+
T Consensus 51 ~~~~~~i~gi~~g~l~am~vl~--------------rra~ra~Y~qieGqpGAa~avL~~lr~~W~~~~-pVa~n 110 (224)
T PF13829_consen 51 SWWYWLIIGILLGLLAAMIVLS--------------RRAQRAAYAQIEGQPGAAGAVLDNLRRGWRVTE-PVAVN 110 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhcCCCchHHHHHHhhcCCcccCC-ceeec
Confidence 3678888888888887777777 112333333333333334455566676444122 66665
No 129
>KOG4615 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=2.3e+02 Score=22.22 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHH
Q 019594 242 NVDGIPGADNTPYAFGLFTAILFFIGV 268 (338)
Q Consensus 242 Nf~~mP~l~~~~~gf~~~~~imv~i~~ 268 (338)
||..-.+.+ .-||-.+..-+.+++++
T Consensus 57 nfqessgik-sgwgavilaeiialiaa 82 (122)
T KOG4615|consen 57 NFQESSGIK-SGWGAVILAEIIALIAA 82 (122)
T ss_pred ccccccCcc-cchhHHHHHHHHHHHhc
Confidence 887777887 77886665555555544
No 130
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=26.15 E-value=1.8e+02 Score=24.08 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 019594 287 EQVEVRKLELQELVKKFQHEAETHAQVRK 315 (338)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (338)
++.+..+.-|++.-.+|.+-+..=++|=+
T Consensus 74 ~~~~s~~~~l~~~~~~~~~~e~Rlr~mE~ 102 (118)
T PRK10697 74 EQQPSSSELLDEVDRELAAGEQRLREMER 102 (118)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666688889999888888888733
No 131
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=25.84 E-value=3.6e+02 Score=23.57 Aligned_cols=8 Identities=50% Similarity=0.978 Sum_probs=4.9
Q ss_pred HhhhccCC
Q 019594 236 TGLFGINV 243 (338)
Q Consensus 236 tGifGMNf 243 (338)
+|.||.|.
T Consensus 17 ~~~f~~n~ 24 (184)
T CHL00019 17 AGSFGFNT 24 (184)
T ss_pred cCccCCcc
Confidence 46677664
No 132
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=25.49 E-value=1.8e+02 Score=24.45 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCC
Q 019594 222 LAVFGGCGVVLTVITGLFGINVDGIPG 248 (338)
Q Consensus 222 LTivs~IflPlT~ItGifGMNf~~mP~ 248 (338)
+|..+++. ..+||++=+...+.|.
T Consensus 51 ~~~~~~~~---~~vtG~~l~~~~g~~~ 74 (150)
T PF10027_consen 51 FTAPGGIL---LPVTGLWLAWLLGWPL 74 (150)
T ss_pred HHHHHHHH---HHHHHHHHHHHhCCCc
Confidence 44444444 5566777666655554
No 133
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.19 E-value=1.9e+02 Score=25.40 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=6.2
Q ss_pred HHHHhhhc
Q 019594 233 TVITGLFG 240 (338)
Q Consensus 233 T~ItGifG 240 (338)
++...+||
T Consensus 35 ~llI~lFg 42 (165)
T PF11286_consen 35 QLLIALFG 42 (165)
T ss_pred HHHHHHcC
Confidence 66777888
No 134
>PHA03240 envelope glycoprotein M; Provisional
Probab=24.84 E-value=90 Score=28.63 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHhhhccCCCCCC---------------CCCCCCchHHHHHHHHHH
Q 019594 235 ITGLFGINVDGIP---------------GADNTPYAFGLFTAILFF 265 (338)
Q Consensus 235 ItGifGMNf~~mP---------------~l~~~~~gf~~~~~imv~ 265 (338)
+|+-=|-|+.|+| -.+ .++..|+++++.++
T Consensus 179 ~t~p~~y~vtgl~~~~~ds~agnveaqr~~~-aaH~~WIiilIIiI 223 (258)
T PHA03240 179 RTSPDDYNVTGLEEGFADSFTGNFEAHRSKD-AAHIAWIFIAIIII 223 (258)
T ss_pred ccCCCCceeeccccccccccccceeeecccc-cchHhHHHHHHHHH
Confidence 3444566666666 222 45666766655443
No 135
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=24.71 E-value=3.1e+02 Score=22.75 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 019594 290 EVRKLELQELVKKFQHEAETHAQV 313 (338)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~ 313 (338)
+..+.-|++.-.+|...+..=++|
T Consensus 80 ~~~~~~l~~~~~~~~~~e~Rl~~m 103 (121)
T TIGR02978 80 QSPRQALREVKREFRDLERRLRNM 103 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788888888877777777
No 136
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=24.64 E-value=4.9e+02 Score=26.55 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 019594 209 AWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVG 274 (338)
Q Consensus 209 ~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~ 274 (338)
.+++++.+-..|..-+++.++..+.-+.|++||... -.+.+ ++|.||++-++..+..+.....+
T Consensus 338 g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~-~~g~~-~~~~f~~~a~~~G~~~G~~qs~s 401 (477)
T PF11700_consen 338 GWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS-FFGLK-SPWEFWVLAVLIGLFMGGIQSAS 401 (477)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc-ccCcc-cHHHHHHHHHHHHHHhhhHHHHH
Confidence 346666665444555666777778888899999776 45677 88998876655444333333333
No 137
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=24.61 E-value=49 Score=21.92 Aligned_cols=19 Identities=32% Similarity=0.756 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhccCCCCCCC
Q 019594 228 CGVVLTVITGLFGINVDGIPG 248 (338)
Q Consensus 228 IflPlT~ItGifGMNf~~mP~ 248 (338)
+|+.+.+++|++| |.|+-+
T Consensus 2 iFliiAliAg~lG--F~Giag 20 (39)
T PF07043_consen 2 IFLIIALIAGVLG--FGGIAG 20 (39)
T ss_pred chHHHHHHHHHcC--cccHHH
Confidence 6889999999999 454444
No 138
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=24.60 E-value=25 Score=33.04 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCCc---hHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019594 272 AVGLLYLGLKKPIT---EEQVEVRKLELQELVKKFQHEAETHAQV 313 (338)
Q Consensus 272 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (338)
++|..||++|++-. .|++|+-+- ++=++|.|+.+.++++|
T Consensus 231 vlG~l~WKkkq~~~~~~~eni~~~ee--dNEiSMLq~~~~e~~~v 273 (273)
T PF02404_consen 231 VLGALYWKKKQRSLTQEVENIQINEE--DNEISMLQEKEREFQEV 273 (273)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHhhccccccccccccccch--hhHHHHHHhhhhhhhcC
Confidence 46667777776633 455666644 55678888888777664
No 139
>PF14036 YlaH: YlaH-like protein
Probab=24.32 E-value=1.3e+02 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=19.9
Q ss_pred CCc-hHHHHHHHHHHHHHHHHHHHHHH
Q 019594 252 TPY-AFGLFTAILFFIGVVLIAVGLLY 277 (338)
Q Consensus 252 ~~~-gf~~~~~imv~i~~~l~~~~~~~ 277 (338)
||+ |+|...+..++++++.+-.|+..
T Consensus 3 ~~~~~~~~~y~~i~vLs~iVy~lgFA~ 29 (77)
T PF14036_consen 3 NPEAGMWLLYLTIFVLSIIVYNLGFAR 29 (77)
T ss_pred CHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 78888888888888888888765
No 140
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=24.27 E-value=1.5e+02 Score=30.07 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Q 019594 224 VFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKF 303 (338)
Q Consensus 224 ivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
++..+.-|.+.|--+|+.-|.++=|.+ +.++||+.+++++++.= +.+.-+..+..-|.+..+.-+=+++++-++|
T Consensus 1 m~~~~~~Pvs~vm~~~h~~~~~~~G~~-~~l~W~isIi~ltiiVR----liLlPL~~~q~ks~~km~~lqPel~~iq~ky 75 (429)
T PRK00247 1 MLDIFIYPVSGVMKLWHLLLHNVLGLD-DSLAWFASLFGLVITVR----AIIAPFTWQQYKSGRTAAHIRPKRKALREEY 75 (429)
T ss_pred CccHHHHHHHHHHHHHHHHHhccccCc-CCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Q ss_pred HHH------HHHHHHHhhhhc-cCCCCCCC
Q 019594 304 QHE------AETHAQVRKNVR-NNLTPTAG 326 (338)
Q Consensus 304 ~~~------~~~~~~~~~~~~-~~~~~~~~ 326 (338)
+.. .+....+.+--. ++..|.+|
T Consensus 76 k~~~d~e~~~~~qqe~~~LyKe~ginP~~g 105 (429)
T PRK00247 76 KGKTDEASIRELQQKQKDLNKEYGYNPLAG 105 (429)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCCchHH
No 141
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=24.06 E-value=74 Score=28.79 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=8.3
Q ss_pred HHHHHHHHHhccCCC
Q 019594 269 VLIAVGLLYLGLKKP 283 (338)
Q Consensus 269 ~l~~~~~~~~~~~~~ 283 (338)
.+.+.-..||++|.+
T Consensus 170 wl~y~q~iywekkn~ 184 (205)
T PF07895_consen 170 WLVYFQIIYWEKKNH 184 (205)
T ss_pred HHHHHHHheeeccCc
Confidence 344455566666655
No 142
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.97 E-value=96 Score=25.67 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 257 GLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 257 ~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
|+++++.+++ ++++++++.+..+|+.
T Consensus 2 W~l~~iii~~-i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 2 WVLFAIIIVA-ILLFLFLFYCHNRRRR 27 (130)
T ss_pred eeeHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 5555555444 4444444444444443
No 143
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=23.35 E-value=4.9e+02 Score=22.56 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=13.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 019594 253 PYAFGLFTAILFFIGVVLIAVGLL 276 (338)
Q Consensus 253 ~~gf~~~~~imv~i~~~l~~~~~~ 276 (338)
|..-+++++++++.+++++.+.++
T Consensus 94 P~aT~lf~~~clv~avvly~vP~r 117 (156)
T PF08372_consen 94 PRATALFVVFCLVAAVVLYFVPFR 117 (156)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhHH
Confidence 455555566666666655555544
No 144
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.30 E-value=1.9e+02 Score=26.82 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 019594 222 LAVFGGCGVVLTVITGLFG 240 (338)
Q Consensus 222 LTivs~IflPlT~ItGifG 240 (338)
....-.||+|..|++.-++
T Consensus 168 ~al~igI~l~a~fva~~~s 186 (239)
T COG4200 168 VALVIGIFLPALFVASAES 186 (239)
T ss_pred HhHHHHHhHHHHHHHhccc
Confidence 3444456679999999888
No 145
>PRK06041 flagellar assembly protein J; Reviewed
Probab=23.22 E-value=8.8e+02 Score=25.39 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 019594 175 LEGIRKNAREMIE 187 (338)
Q Consensus 175 l~dv~d~~~~l~~ 187 (338)
++|..+++...++
T Consensus 143 l~~fl~~l~~~i~ 155 (553)
T PRK06041 143 FADFLDRLAYSID 155 (553)
T ss_pred HHHHHHHHHHHHh
Confidence 4555444444443
No 146
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=23.00 E-value=4.6e+02 Score=22.03 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHhccCC
Q 019594 217 RVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAI--LFFIGVVLIAVGLLYLGLKK 282 (338)
Q Consensus 217 ~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~i--mv~i~~~l~~~~~~~~~~~~ 282 (338)
+.|..-++++++|+..=..-=.+|=+.+ .++.+..++-|..+++. .+.+..+..++--.+.++|+
T Consensus 36 ~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~-f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~ 102 (133)
T PF04238_consen 36 KLMLTAFVLSALFLVSYLYYHFLGGSTP-FGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG 102 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466677778888876554333333333 45544244445544443 33333334444445556665
No 147
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=22.82 E-value=1.5e+02 Score=17.95 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 019594 221 NLAVFGGCGVVLTVITGLF 239 (338)
Q Consensus 221 ~LTivs~IflPlT~ItGif 239 (338)
.+-.++++++-...+||++
T Consensus 7 w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLI 25 (27)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666654
No 148
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.74 E-value=6.9e+02 Score=24.02 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 019594 212 QDRSLRVTHNLAVF 225 (338)
Q Consensus 212 ~~~~N~vmk~LTiv 225 (338)
.++-++-.|+..++
T Consensus 263 ~qkkaRK~k~i~ii 276 (297)
T KOG0810|consen 263 YQKKARKWKIIIII 276 (297)
T ss_pred HHHHhhhceeeeeh
Confidence 34444434444333
No 149
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=22.66 E-value=75 Score=30.30 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHH-HHHHH-HHHHHhccCCC
Q 019594 226 GGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIG-VVLIA-VGLLYLGLKKP 283 (338)
Q Consensus 226 s~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~-~~l~~-~~~~~~~~~~~ 283 (338)
++++.-+|.+.|+..+.|...|... ..|...++++++... .+++. ..+.+++.+.+
T Consensus 250 ~i~~s~ltt~~gf~~L~~s~~~~~~--~~G~~~~~gi~~~~l~~l~llPall~~~~~~~~ 307 (333)
T PF03176_consen 250 AILLSALTTAIGFGSLLFSPFPPLR--QFGLLAAIGILIALLLSLTLLPALLSLLGRWRW 307 (333)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 4556667899999999999899886 678776666543222 22222 34444555544
No 150
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.54 E-value=8.2e+02 Score=24.80 Aligned_cols=88 Identities=9% Similarity=0.085 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--------hcc-hhHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--------LRG-NVART 173 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~--------l~~-~~~~~ 173 (338)
-++.+.+-+++|-..+..++-.. ....+-.+.+++-.+..-+..+.+-+....+. +.. -+.+.
T Consensus 221 kVdDLQD~VE~LRkDV~~RgvRp--------~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQq 292 (424)
T PF03915_consen 221 KVDDLQDLVEDLRKDVVQRGVRP--------SPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQ 292 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666776654322 23455555555555555555555555555431 110 02344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 174 LLEGIRKNAREMIEEQEAVRGRLFT 198 (338)
Q Consensus 174 ~l~dv~d~~~~l~~~l~~~re~l~~ 198 (338)
+|..-.+-+..+.++++.+.+....
T Consensus 293 fL~~QedL~~DL~eDl~k~~etf~l 317 (424)
T PF03915_consen 293 FLKLQEDLLSDLKEDLKKASETFAL 317 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555554444443
No 151
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.50 E-value=1.5e+02 Score=28.54 Aligned_cols=14 Identities=36% Similarity=0.244 Sum_probs=6.5
Q ss_pred HHHHHHHHhccCCC
Q 019594 270 LIAVGLLYLGLKKP 283 (338)
Q Consensus 270 l~~~~~~~~~~~~~ 283 (338)
.+++-+||-++||+
T Consensus 274 IIYLILRYRRKKKm 287 (299)
T PF02009_consen 274 IIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHhhh
Confidence 33444444454554
No 152
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=22.50 E-value=7e+02 Score=24.08 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019594 215 SLRVTHNLAVFGGCGVVLTV 234 (338)
Q Consensus 215 ~N~vmk~LTivs~IflPlT~ 234 (338)
..-+--+||+++..+.|.|+
T Consensus 105 ~g~vsGilsIlGLaLAPvT~ 124 (313)
T PF05461_consen 105 TGAVSGILSILGLALAPVTA 124 (313)
T ss_pred HHHHhhHHHHHhHHhccccc
Confidence 33344456666666666654
No 153
>PHA02819 hypothetical protein; Provisional
Probab=22.48 E-value=2.2e+02 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=12.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594 253 PYAFGLFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 253 ~~gf~~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
++++++++.+ ++.+++++.+.+.|++.
T Consensus 43 ~~~~~~~ii~-l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 43 SFLRYYLIIG-LVTIVFVIIFIIFYLKV 69 (71)
T ss_pred ChhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 4444443333 33333344556666543
No 154
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=22.37 E-value=2.7e+02 Score=23.34 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 019594 211 LQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVD 244 (338)
Q Consensus 211 ~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~ 244 (338)
+.+-.|.-+..++.=|.+|+-+++++++++-||.
T Consensus 97 laeiiN~Fie~is~Kt~~fll~~~~~~~~~~N~~ 130 (135)
T PF10104_consen 97 LAEIINSFIEPISWKTLIFLLLIILIWIFASNFA 130 (135)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677677788888899999999999999984
No 155
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.37 E-value=1.4e+02 Score=24.45 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhhc
Q 019594 305 HEAETHAQVRKNVR 318 (338)
Q Consensus 305 ~~~~~~~~~~~~~~ 318 (338)
|++.+|++++.++.
T Consensus 25 Kr~Ke~~em~~sLk 38 (113)
T PRK06531 25 KQAQERQNQLNAIQ 38 (113)
T ss_pred HHHHHHHHHHHhcC
Confidence 34455666665544
No 156
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=21.98 E-value=42 Score=29.93 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=28.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCc---h--------HHHHHHHHHHHHHHHHhHHHHHH
Q 019594 252 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPIT---E--------EQVEVRKLELQELVKKFQHEAET 309 (338)
Q Consensus 252 ~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~ 309 (338)
|.|+||..+++.+++++ +++.+-+...++.+ . -.+..-|-++..++..|-+...+
T Consensus 3 WK~aF~~Lla~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~qlN~li~~YL~~~~k 68 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVI---VVFFRLFQPSEPEPSTSSKQKKGDASFTITTNKEQLNALIASYLKKYQK 68 (187)
T ss_pred HHHHHHHHHHHHHHHHh---heeeEEEccCCCcccccccccCCCcEEEEEeCHHHHHHHHHHHHHHhcc
Confidence 88888886665444333 22222222222111 1 12344566777777777766553
No 157
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.93 E-value=4.4e+02 Score=22.40 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 019594 219 THNLAVFGGCGVVLTVITGLFGINV 243 (338)
Q Consensus 219 mk~LTivs~IflPlT~ItGifGMNf 243 (338)
-|++..+++.|++.+.+-|++-.=.
T Consensus 5 a~lF~~l~~Ff~~~~~vY~~~t~~~ 29 (137)
T PF12270_consen 5 AKLFYGLAVFFLVVAVVYGFWTKWS 29 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4679999999999999999987733
No 158
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=21.89 E-value=1.2e+02 Score=33.38 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH-HhhhccCCCCCCCCCC-C--CchHHHHHHHHHHHHHH-----HHHHHHHHhc
Q 019594 210 WLQDRSLRVTHNLA-VFGGCGVVLTVI-TGLFGINVDGIPGADN-T--PYAFGLFTAILFFIGVV-----LIAVGLLYLG 279 (338)
Q Consensus 210 ~~~~~~N~vmk~LT-ivs~IflPlT~I-tGifGMNf~~mP~l~~-~--~~gf~~~~~imv~i~~~-----l~~~~~~~~~ 279 (338)
.+++.+++.-+.|| +++.+..-.-++ .|+|= .|-... | .+-|++.+++.+.++++ .+....+-+|
T Consensus 235 PLqk~ld~~G~qLs~~is~i~v~v~~~nig~f~-----~p~~~g~~fk~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG 309 (972)
T KOG0202|consen 235 PLQKKLDEFGKQLSKVISFICVGVWLLNIGHFL-----DPVHGGSWFKGALYYFKIAVSLAVAAIPEGLPAVVTTTLALG 309 (972)
T ss_pred cHHHHHHHHHHHHHHHheehhhhHHHhhhhhhc-----cccccccchhchhhhhhHHHHHHHHhccCCCcchhhhhHHHh
Confidence 46889999999999 887766555555 55553 231110 1 23355555555555443 2233344456
Q ss_pred cCCCCchHHHHHHHHH
Q 019594 280 LKKPITEEQVEVRKLE 295 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~ 295 (338)
-+++ ++|++.|||+.
T Consensus 310 ~~rM-akknaIVRkLP 324 (972)
T KOG0202|consen 310 TRRM-AKKNAIVRKLP 324 (972)
T ss_pred HHHH-Hhhhhhhhccc
Confidence 6655 66788899884
No 159
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=21.87 E-value=6.1e+02 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Q 019594 258 LFTAILFFIGVVLIAVGLLYLGLKK 282 (338)
Q Consensus 258 ~~~~imv~i~~~l~~~~~~~~~~~~ 282 (338)
..++.+++.+++...++.+.+++|.
T Consensus 227 ~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 227 LHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666667777777766543
No 160
>TIGR03747 conj_TIGR03747 integrating conjugative element membrane protein, PFL_4697 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.73 E-value=1.9e+02 Score=26.82 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=38.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhHHH
Q 019594 252 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHE 306 (338)
Q Consensus 252 ~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (338)
+|+.+..++.++.++++++-|.|+.+++...--.|.+ +|=.-|++.+...|-++
T Consensus 11 l~~~l~g~l~~sl~~silie~~G~~~~w~~~g~~hs~-~~~~~el~~ls~~~~~s 64 (233)
T TIGR03747 11 LPFRLLGVLLGSLIFSILIEWVGMAFFWPEQGWLHSQ-QMMTTELGWLSEGFTRS 64 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHHHHHhhhHH
Confidence 5677777788888888888899999887765544433 44444788888777654
No 161
>PRK11380 hypothetical protein; Provisional
Probab=21.56 E-value=5.1e+02 Score=25.53 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH------HHHHh--ccCCCCchHHHHHHH
Q 019594 222 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAV------GLLYL--GLKKPITEEQVEVRK 293 (338)
Q Consensus 222 LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~------~~~~~--~~~~~~~~~~~~~~~ 293 (338)
+|++-+|......|+|.+=-.-++.|... -|+.++.+++.+..++-..+ -.+|+ +.-.++||||-+.=.
T Consensus 46 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~l~~~~~~~~~~~~~eq~~yy~~~~~~~LteEq~r~L~ 122 (353)
T PRK11380 46 LTCVVAVMFVFAAITSNGLNERGYLLLIT---AGCSFLYLLIMLGLIVRAGFKKAKKEQLRYYQAKGIEPLSEEKRQALQ 122 (353)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHH---HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHhHH
Q 019594 294 LELQELVKKFQH 305 (338)
Q Consensus 294 ~~~~~~~~~~~~ 305 (338)
+.- |..||+
T Consensus 123 L~a---Vya~~~ 131 (353)
T PRK11380 123 LIA---VYRFYH 131 (353)
T ss_pred Hhh---HHHHHh
No 162
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.54 E-value=1.3e+02 Score=28.74 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 019594 172 RTLLEGIRKNARE 184 (338)
Q Consensus 172 ~~~l~dv~d~~~~ 184 (338)
..||..+..++.+
T Consensus 162 DkYLkhLK~rC~~ 174 (295)
T TIGR01478 162 DNYLKNLKKGCTA 174 (295)
T ss_pred hHHHHhhhccCCC
Confidence 3467766666544
No 163
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.50 E-value=5.2e+02 Score=22.13 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 134 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQD 201 (338)
Q Consensus 134 ~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d 201 (338)
+-.+|..++.++..++......+.-+..|......++ +.+.+..+-+++..+.+++..+.+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e-------l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE-------LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888777777766666666654333332 333444444555555555555444
No 164
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.39 E-value=1.5e+02 Score=24.02 Aligned_cols=11 Identities=9% Similarity=0.298 Sum_probs=5.5
Q ss_pred HHHHHHhhhhc
Q 019594 308 ETHAQVRKNVR 318 (338)
Q Consensus 308 ~~~~~~~~~~~ 318 (338)
++|++++.++.
T Consensus 44 k~~~~~~~~Lk 54 (106)
T PRK05585 44 KEHKKMLSSLA 54 (106)
T ss_pred HHHHHHHHhcC
Confidence 44555555443
No 165
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=21.33 E-value=1.4e+02 Score=26.72 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhcc--CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 225 FGGCGVVLTVITGLFGI--NVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 225 vs~IflPlT~ItGifGM--Nf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
+...++.++=++|+||. =|.|-|.-- ++|.+++-..++ ++++.+|+...++.+|
T Consensus 15 li~l~~l~NK~sG~YGlLAlfTG~~ls~-~Q~s~YlySi~~----L~~~~~~l~~Irk~~~ 70 (189)
T PF08552_consen 15 LILLFLLFNKVSGLYGLLALFTGHPLSF-LQLSMYLYSILA----LVLFAWGLPHIRKQSP 70 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHH----HHHHHHHhHHhccCCH
Confidence 34455667888888887 455666544 667666554443 3344566666665554
No 166
>PRK12369 putative transporter; Reviewed
Probab=21.18 E-value=7.6e+02 Score=23.90 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=15.4
Q ss_pred HhccCCCCchHHHHHHHHHHHHHHHHhHHHH
Q 019594 277 YLGLKKPITEEQVEVRKLELQELVKKFQHEA 307 (338)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
+.|++-.--.-+-|-++.|+.--..+-...|
T Consensus 188 ~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~a 218 (326)
T PRK12369 188 FVGIKLPGLEYNNQKVEAAFRKELVYAEDDK 218 (326)
T ss_pred HHcCcCchhhHHHHHHHHHHHHHHHhhccch
Confidence 3444444335556666777654444433333
No 167
>PTZ00370 STEVOR; Provisional
Probab=21.16 E-value=1.7e+02 Score=28.06 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 019594 172 RTLLEGIRKNARE 184 (338)
Q Consensus 172 ~~~l~dv~d~~~~ 184 (338)
..||..+..++.+
T Consensus 162 DkYLkhLK~rC~~ 174 (296)
T PTZ00370 162 DKYLKHLKHRCTG 174 (296)
T ss_pred hHHHhhhhccCCC
Confidence 3466666665543
No 168
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=21.04 E-value=2.8e+02 Score=23.74 Aligned_cols=54 Identities=19% Similarity=0.122 Sum_probs=31.2
Q ss_pred HHHHHHHHHHH-HHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 222 LAVFGGCGVVL-TVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 222 LTivs~IflPl-T~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
.|-++.=++|+ ..++-.|=+.|. + +.++-..+.+++.++.+=.=|+.|+|+|-.
T Consensus 34 aTrfa~k~MP~lAv~s~~~Q~~~~---~-----~~~lp~ai~~aLFalSLPlQGl~WLGkRa~ 88 (143)
T PF04217_consen 34 ATRFAIKFMPALAVFSLLWQIAFN---G-----GQALPQAIATALFALSLPLQGLYWLGKRAN 88 (143)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh---h-----hhhhHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 56677777775 556666777772 1 122223333444444555677888887754
No 169
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=20.96 E-value=3.2e+02 Score=23.04 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHHH-HHHhhhccCCCCCCCCC---CCCchHHHHHHHHHHH
Q 019594 225 FGGCGVVLT-VITGLFGINVDGIPGAD---NTPYAFGLFTAILFFI 266 (338)
Q Consensus 225 vs~IflPlT-~ItGifGMNf~~mP~l~---~~~~gf~~~~~imv~i 266 (338)
+.-|++|+- .++| |.||+++-... .-.||=++..++-+++
T Consensus 35 V~dii~PlI~~~~g--~~~~~~~~~~~~~~~i~yG~fl~avInFlI 78 (130)
T PRK13955 35 VKDIITPLLGMVLG--GVDFTDLKFTFGKSSIMYGNFIQTIFDFLI 78 (130)
T ss_pred HHHHHHHHHHhccC--CCCcccceeecccceeeHHHHHHHHHHHHH
Confidence 344666653 2223 77888652211 0236655544443333
No 170
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=20.87 E-value=7.9e+02 Score=24.01 Aligned_cols=11 Identities=9% Similarity=-0.176 Sum_probs=5.1
Q ss_pred HHHHHHHHHcC
Q 019594 66 ITEVQELLFVG 76 (338)
Q Consensus 66 ~~~l~~~l~~~ 76 (338)
-++..+.+...
T Consensus 22 ~~~a~~~L~~~ 32 (399)
T TIGR02120 22 ARAARLQLRER 32 (399)
T ss_pred HHHHHHHHHHC
Confidence 34455555443
No 171
>PF09529 Intg_mem_TP0381: Integral membrane protein (intg_mem_TP0381); InterPro: IPR011737 This entry represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=20.68 E-value=3.1e+02 Score=24.59 Aligned_cols=29 Identities=17% Similarity=0.012 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594 215 SLRVTHNLAVFGGCGVVLTVITGLFGINVDGI 246 (338)
Q Consensus 215 ~N~vmk~LTivs~IflPlT~ItGifGMNf~~m 246 (338)
..+++..+.++.++....+.++ |-|+-.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~N~~~---~~NY~yl 183 (225)
T PF09529_consen 155 FWRSFIFLNILAIIIFIVNYIL---GSNYFYL 183 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---CCCeEee
Confidence 4444555555555555555554 9998654
No 172
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=20.63 E-value=2.6e+02 Score=27.72 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 019594 198 TIQDVMQSTVRA----WLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINV 243 (338)
Q Consensus 198 ~l~d~~~s~~~~----~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf 243 (338)
++++.+++..++ +..-.+.++. +|++.=-+||+.. +.||++
T Consensus 16 Tv~~lfs~~LgsE~~~FV~YHikRT~--~tllvHs~LPlgY---~~~~~~ 60 (358)
T PF10272_consen 16 TVQNLFSSWLGSEDYDFVQYHIKRTS--ATLLVHSCLPLGY---FIGMCF 60 (358)
T ss_pred cHHHHHHHhhCccccchHHHHHhHhH--HHHHHHHHHHHHH---HhheeE
Confidence 455555555532 3455555544 5555556677766 556665
No 173
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=20.61 E-value=6.3e+02 Score=22.74 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 019594 134 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHL 166 (338)
Q Consensus 134 ~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l 166 (338)
+..+|.++..++..||..+.+.+.-..+|++.+
T Consensus 49 lr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 49 LRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777777778888888888888777777644
No 174
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.40 E-value=3.9e+02 Score=20.24 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 019594 262 ILFFIGVVLIAVGLLYLGLKK 282 (338)
Q Consensus 262 imv~i~~~l~~~~~~~~~~~~ 282 (338)
+.+++.++.+|+.+-|..+++
T Consensus 11 iif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 11 IIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 344444445555555554443
No 175
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=20.40 E-value=93 Score=31.86 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=19.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Q 019594 252 TPYAFGLFTAILFFIGVVLIAVGL 275 (338)
Q Consensus 252 ~~~gf~~~~~imv~i~~~l~~~~~ 275 (338)
+-|+=||++++++++++-++.+.+
T Consensus 52 ~Vy~SwWfl~iivlL~VSLv~C~l 75 (478)
T COG1333 52 DVYSSWWFLAIIVLLGVSLVGCSL 75 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567888899998888887776665
No 176
>COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]
Probab=20.14 E-value=4e+02 Score=24.37 Aligned_cols=58 Identities=24% Similarity=0.067 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhh-ccCCCCCCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHhccCCCCc
Q 019594 227 GCGVVLTVITGLF-GINVDGIPGADNTPYAFGLFTA--ILFFIGVVLIAVGLLYLGLKKPIT 285 (338)
Q Consensus 227 ~IflPlT~ItGif-GMNf~~mP~l~~~~~gf~~~~~--imv~i~~~l~~~~~~~~~~~~~~~ 285 (338)
.+.+|++++||+= +++.. .|+++.++-|+-.+-. ..+++.++.+++.=+++..+-+.+
T Consensus 148 ~~LlpLlvlTGLam~~p~~-~p~l~~~~Ggrq~ar~vHFa~m~~~v~FiivHl~l~~~~~p~ 208 (221)
T COG4117 148 YGLLPLLVLTGLAMLKPQQ-LPWLDELPGGRQTARWVHFALMLIVVGFIIVHLLLCLLAGPT 208 (221)
T ss_pred HHHHHHHHHHHHHHccccc-cchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 4568999999973 55555 6766546655533222 222233334455556666666633
No 177
>PRK04406 hypothetical protein; Provisional
Probab=20.13 E-value=3.9e+02 Score=20.12 Aligned_cols=44 Identities=7% Similarity=0.103 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019594 104 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLH 153 (338)
Q Consensus 104 ~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~ 153 (338)
++.++.++++||.++.-....- ..+++.+..-.+++-.+++-+.
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tI------e~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTI------EELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777665322111 1245555666666655555443
Done!