Query 019594
Match_columns 338
No_of_seqs 165 out of 1291
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iub_A CORA, divalent cation t 100.0 3.4E-46 1.2E-50 363.1 29.1 246 11-283 113-362 (363)
2 4ev6_A Magnesium transport pro 100.0 1.1E-44 3.6E-49 349.5 31.6 244 11-284 91-339 (339)
3 4egw_A Magnesium transport pro 99.9 9.3E-24 3.2E-28 197.9 22.1 184 12-220 92-280 (280)
4 3ck6_A Putative membrane trans 99.9 8.1E-24 2.8E-28 195.0 19.4 179 11-219 71-252 (252)
5 3nvo_A Zinc transport protein 99.9 2.2E-22 7.5E-27 186.5 20.4 176 11-207 83-261 (264)
6 2bbh_A Divalent cation transpo 99.8 2.6E-18 8.9E-23 159.4 16.6 162 11-190 104-269 (269)
7 2hn1_A CORA, magnesium and cob 99.7 1.6E-17 5.6E-22 154.0 14.7 154 11-186 109-265 (266)
8 2iub_A CORA, divalent cation t 95.6 1.4 4.8E-05 41.8 20.2 166 103-283 189-359 (363)
9 4ev6_A Magnesium transport pro 95.5 0.24 8.1E-06 46.7 14.0 172 90-280 156-332 (339)
10 3nvo_A Zinc transport protein 80.8 8.3 0.00028 34.2 9.5 104 103-216 156-262 (264)
11 4egw_A Magnesium transport pro 77.4 7.2 0.00025 35.2 8.1 107 103-217 165-274 (280)
12 3ck6_A Putative membrane trans 70.6 16 0.00054 32.1 8.4 100 103-217 145-247 (252)
13 2etd_A LEMA protein; bromodoma 57.3 86 0.0029 26.3 11.4 54 182-250 105-158 (171)
14 3hzq_A Large-conductance mecha 41.5 79 0.0027 24.9 6.7 46 226-274 56-103 (114)
15 3ghg_A Fibrinogen alpha chain; 39.3 3E+02 0.01 27.3 12.4 25 89-114 52-76 (562)
16 1scf_A Stem cell factor; steel 38.9 6.4 0.00022 35.3 0.0 41 271-313 230-273 (273)
17 2qij_C Core antigen; viral cap 35.7 8.4 0.00029 31.4 0.2 23 232-255 1-23 (157)
18 2lcn_A WALP19-P10 peptide; pro 33.6 48 0.0017 18.5 3.0 20 254-273 1-20 (26)
19 1oxz_A ADP-ribosylation factor 29.0 2.7E+02 0.0091 23.7 11.5 59 135-193 68-127 (186)
20 2oar_A Large-conductance mecha 28.8 61 0.0021 27.5 4.4 44 225-271 58-109 (174)
21 3ls0_A SLL1638 protein, PSBQ; 28.6 2.1E+02 0.0072 23.0 7.4 49 103-155 31-80 (133)
22 1wrd_A TOM1, target of MYB pro 27.5 2E+02 0.0069 21.8 8.5 57 137-193 7-63 (103)
23 3rvy_A ION transport protein; 27.1 59 0.002 28.9 4.4 6 252-257 209-214 (285)
24 3ghg_A Fibrinogen alpha chain; 26.8 2E+02 0.0067 28.6 8.2 19 136-154 109-128 (562)
25 1rdt_E LXXLL motif coactivator 26.7 54 0.0018 18.7 2.5 19 304-322 4-22 (26)
26 2lco_A WALP19-P8 peptide; prol 26.4 73 0.0025 17.7 2.9 19 255-273 2-20 (26)
27 3hd7_B Syntaxin-1A; membrane p 26.1 2.2E+02 0.0075 21.7 14.1 30 135-164 13-42 (109)
28 3rkg_A Magnesium transporter M 25.6 3.6E+02 0.012 24.0 19.5 148 39-207 79-254 (261)
29 2kmf_A Photosystem II 11 kDa p 25.5 2.3E+02 0.0078 22.2 7.0 25 222-248 67-94 (115)
30 1naf_A ADP-ribosylation factor 23.9 3.1E+02 0.01 22.6 8.8 55 137-191 54-109 (158)
31 1i6z_A BAG-family molecular ch 22.7 3E+02 0.01 22.1 9.0 83 103-198 36-121 (135)
32 2y6x_A PSB27, photosystem II 1 21.1 3E+02 0.01 21.5 7.4 25 222-248 63-90 (113)
33 1deq_A Fibrinogen (alpha chain 20.9 5.4E+02 0.018 24.4 11.7 12 104-115 69-80 (390)
34 1o3x_A ADP-ribosylation factor 20.6 3.3E+02 0.011 21.8 9.7 57 137-193 45-102 (140)
No 1
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=3.4e-46 Score=363.14 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=200.0
Q ss_pred EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCC-CCCHHHHHH
Q 019594 11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNV-PRTVHEVIA 89 (338)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~ll~ 89 (338)
.+++++|++++.+.. ++..+... +.+++||+++++|||+++. +...++.+++++.++.+.. ..++..+++
T Consensus 113 ~~~~~lfivl~~~~~-~~~~~~~~-~~~v~~~l~~~~liTv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~ 183 (363)
T 2iub_A 113 FFENYVFIVLKMFTY-DKNLHELE-SEQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLY 183 (363)
T ss_dssp EETTEEEEEEEEEEE-ETTTTEEE-EEEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTTTTSCHHHHHH
T ss_pred EECCEEEEEEEeeee-cccccccc-eEEEEEEEECCEEEEEEeC-------CCchHHHHHHHHHhcCCccccCCHHHHHH
Confidence 489999999999876 33222112 3789999999999999997 6788999999998763112 347888999
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hh
Q 019594 90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HL 166 (338)
Q Consensus 90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l 166 (338)
+|++.++|.|.+ +++.++++++++|++++.++.++ .+++|+.+||+++.+||++.|+++++.+|.+ ..
T Consensus 184 ~lld~ivd~y~~-~l~~l~~~id~lE~~v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~ 254 (363)
T 2iub_A 184 SLIDALVDDYFV-LLEKIDDEIDVLEEEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL 254 (363)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHTTSSCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999 99999999999999999876433 4789999999999999999999999999985 23
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594 167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI 246 (338)
Q Consensus 167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~m 246 (338)
.+++.+.+++|+.||+.++.+.++.++++++.++|.+.|.+ |+++|++||+||++|+||+|||||||+|||||++|
T Consensus 255 ~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~i----s~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~m 330 (363)
T 2iub_A 255 IEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSV----SNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYM 330 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Confidence 34568889999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 247 PGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 247 P~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
||++ |+||||+++++|+++++++ +.||++|+|
T Consensus 331 Pel~-~~~Gy~~~l~~m~~i~~~~----~~~Fkrk~W 362 (363)
T 2iub_A 331 PELR-WKWGYPVVLAVMGVIAVIM----VVYFKKKKW 362 (363)
T ss_dssp ---------CHHHHHHHHHHHHHH----HTTTTSCC-
T ss_pred Cccc-CcHHHHHHHHHHHHHHHHH----HHHHHHccc
Confidence 9999 9999999999998887643 566777776
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-44 Score=349.49 Aligned_cols=244 Identities=18% Similarity=0.209 Sum_probs=214.5
Q ss_pred EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCC--CCCCHHHHH
Q 019594 11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN--VPRTVHEVI 88 (338)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~ll 88 (338)
.++++.|++++.+.. ++..+ +.++++|++++++||+|++ +...++++++++..++.. ..++++.++
T Consensus 91 ~~~~~~~iv~~~~~~-~~~~~----~~~v~i~l~~~~lITv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 158 (339)
T 4ev6_A 91 EDEDFYLIIYKAPLF-EEDIT----TTSLGIYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLL 158 (339)
T ss_dssp EETTEEEEECCCCCC-TTTCC----CCCCEEEEETTEEEEEESS-------CCHHHHHHHHHSSSSSSCCCCCSCHHHHH
T ss_pred EECCEEEEEEecCcc-CCCcc----eEEEEEEEECCeeEEeecC-------CcchhHHHHHHHHcCCCccccccCHHHHH
Confidence 478999999998765 33222 3677999999999999987 788899999988765421 246789999
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---
Q 019594 89 AHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--- 165 (338)
Q Consensus 89 ~~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~--- 165 (338)
+++++.++|.|.+ +++.++++++++|++++.++.++ .+++|..+||++..+||++.|+++++..|.+.
T Consensus 159 ~~lld~ivd~~~~-~l~~l~~~i~~lE~~l~~~~~~~--------~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~ 229 (339)
T 4ev6_A 159 YHILNEITRSYSR-ILMNLEDELEELEDKLLAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLP 229 (339)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHTSTTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBT
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhh--------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Confidence 9999999999999 99999999999999999876543 57899999999999999999999999999862
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 019594 166 LRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDG 245 (338)
Q Consensus 166 l~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~ 245 (338)
...++.+.+++|+.+++.++.+.++.+++.++.+.|.+.|.+ |+++|++||+||++|+||+|||||||+|||||++
T Consensus 230 ~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~i----s~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~ 305 (339)
T 4ev6_A 230 ITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLE----NIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSY 305 (339)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCC
Confidence 335568899999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 019594 246 IPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI 284 (338)
Q Consensus 246 mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~ 284 (338)
|||++ ||||||+++++|+++++++ +.||++|+|+
T Consensus 306 mPel~-~~~gy~~~l~~m~~~~~~~----~~~fkrk~WL 339 (339)
T 4ev6_A 306 LPLAN-NPQGFWLVMALMVVIIMIF----VYIFRRSGWI 339 (339)
T ss_dssp CTTSS-CTTHHHHHHHHHHHHHHHH----HHHHHTTTCC
T ss_pred CCCcc-CchHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 99999 9999999999999888755 4467888774
No 3
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=9.3e-24 Score=197.90 Aligned_cols=184 Identities=15% Similarity=0.168 Sum_probs=154.3
Q ss_pred eCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCC--CCCCHHHHHH
Q 019594 12 VAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN--VPRTVHEVIA 89 (338)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~ll~ 89 (338)
++++.|++++.+.. ++.. . +.+++||++++++||+++. +...++.+++++..++.. ..+++..+++
T Consensus 92 ~~d~~fivl~~~~~-~~~~---~-t~~v~i~l~~~~lITv~~~-------~~~~~~~v~~~l~~~~~~~~~~~g~~~ll~ 159 (280)
T 4egw_A 92 DEDFYLIIYKAPLF-EEDI---T-TTSLGIYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLLY 159 (280)
T ss_dssp CSSSEEEEEEEEEC-SSSC---E-EEEEEEEEETTEEEEEESS-------CCHHHHHHHHHHHHSCCSSSCTTTTTHHHH
T ss_pred ECCEEEEEEEeccc-cccc---e-eeeEEEEEECCEEEEEecC-------CcchHHHHHHHHHhcCcccccccCHHHHHH
Confidence 78899999998775 4322 2 4789999999999999997 788999999999876522 1357889999
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---h
Q 019594 90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH---L 166 (338)
Q Consensus 90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~---l 166 (338)
+|++.++|.|.+ +++.++++++++|+.++.++.++ .+.+|+.+||+++.+||++.|+++++.+|.+. .
T Consensus 160 ~lld~ivd~y~~-~l~~i~~~id~lE~~l~~~~~~~--------~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~ 230 (280)
T 4egw_A 160 HILNEITRSYSR-ILMNLEDELEELEDKLLAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI 230 (280)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchh--------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccc
Confidence 999999999999 99999999999999999876543 57899999999999999999999999999862 3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTH 220 (338)
Q Consensus 167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk 220 (338)
..++.+.+|+|+.+|+.++.+.++.+++.++.+.|.+.|.+ |++||++||
T Consensus 231 ~~~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~i----s~~~N~iMK 280 (280)
T 4egw_A 231 TTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLE----NIKMNQIMK 280 (280)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----C--------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhC
Confidence 45668999999999999999999999999999999999998 899999997
No 4
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.92 E-value=8.1e-24 Score=195.02 Aligned_cols=179 Identities=15% Similarity=0.180 Sum_probs=153.4
Q ss_pred EeCC-eEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHH
Q 019594 11 RVAG-GLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIA 89 (338)
Q Consensus 11 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~ 89 (338)
.+++ ++|++++++.. ++..++.+. ++++||+++++|||+++. +...++.+++++.++. .+.++.++++
T Consensus 71 ~~~d~~lfivl~~~~~-~~~~~~~~~-~~l~i~l~~~~lITvr~~-------~~~~~~~v~~~l~~~~--~~~~~~~ll~ 139 (252)
T 3ck6_A 71 PLDDDNFMLILRGINM-NENASPEDM-LSIRILYFQGALISTRKI-------PSRAIMEIRQALAEHK--GPKSLASLLN 139 (252)
T ss_dssp ECSTTCEEEEEEECCC-STTCCTTSC-EEEEEEEETTEEEEEESS-------CCHHHHHHHHHHHTTC--SCSSHHHHHH
T ss_pred EeCCceEEEEEecCcc-CCCCCcccE-EEEEEEEeCCEEEEEeCC-------CcchHHHHHHHHHhCC--CCCCHHHHHH
Confidence 4889 99999999886 444334444 899999999999999997 7889999999998876 5689999999
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--hc
Q 019594 90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--LR 167 (338)
Q Consensus 90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~--l~ 167 (338)
+|++.++|+|.+ +++.++++++++|+. . + .+.+|+.+||+++.+||++.|+++++.+|.+. ..
T Consensus 140 ~lld~ivd~y~~-~l~~l~~~id~lE~~--~----~--------~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~ 204 (252)
T 3ck6_A 140 QIIEGLNGKIDL-YLDTIEETLNEFDVN--D----E--------STYNHIAAQKALISIKRFIRPQQYAIRDLIESESEL 204 (252)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHTCCTT--C----G--------GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHcC--c----h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999 899999999999987 1 1 24689999999999999999999999999852 13
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 168 GNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVT 219 (338)
Q Consensus 168 ~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vm 219 (338)
.++.+.+++|+.||+.++.+.+++++|++..++|.+.|.+ +++||++|
T Consensus 205 ~~~~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~----s~~~N~~m 252 (252)
T 3ck6_A 205 VTSRPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNR----DEKTNKNS 252 (252)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHccCC
Confidence 4457889999999999999999999999999999999998 88999876
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.90 E-value=2.2e-22 Score=186.50 Aligned_cols=176 Identities=15% Similarity=0.226 Sum_probs=147.4
Q ss_pred EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594 11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH 90 (338)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~ 90 (338)
.+++++|++++++.. ++..++.+. .+++||+++++|||+++. +...++.+++++.++. .+.++..++++
T Consensus 83 ~~~~~~fivl~~~~~-~~~~~~~~~-~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~--~~~~~~~ll~~ 151 (264)
T 3nvo_A 83 RMGEGTLITLRCING-STDERPDQL-VAMRLYMDERFIVSTRQR-------KVLALDDVVSDLQEGT--GPVDCGGWLVD 151 (264)
T ss_dssp EETTEEEEEEECC-----------C-CEEEEEECSSEEEEEESS-------CCHHHHHHHHHHHTTC--SCSSHHHHHHH
T ss_pred EECCEEEEEEEeccc-CCCCCCcce-EEEEEEEeCCEEEEEecC-------CcCcHHHHHHHHHhCC--CCCCHHHHHHH
Confidence 489999999999886 444333343 899999999999999997 7889999999998886 56899999999
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhc
Q 019594 91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLR 167 (338)
Q Consensus 91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~ 167 (338)
|++.++|+|.+ +++.++++++++|+.++.+ .++ .+.+|+.+||+++.+||++.|+++++.+|.+ ...
T Consensus 152 lld~ivd~y~~-~l~~l~~~id~lE~~l~~~-~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~ 221 (264)
T 3nvo_A 152 VCDALTDHASE-FIEELHDKIIDLEDNLLDQ-QIP--------PRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWM 221 (264)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHTTC-----CCC--------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTS
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC-Cch--------hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccC
Confidence 99999999999 8999999999999999977 433 3679999999999999999999999999985 234
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 168 GNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV 207 (338)
Q Consensus 168 ~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~ 207 (338)
.++.+.+++|+.+|+.++.+.++.+++++..++|.++|.+
T Consensus 222 ~~~~~~~l~Dv~d~~~~~~e~~~~~re~l~~l~d~~~s~~ 261 (264)
T 3nvo_A 222 SDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVM 261 (264)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5668999999999999999999999999999999888775
No 6
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.78 E-value=2.6e-18 Score=159.45 Aligned_cols=162 Identities=13% Similarity=0.061 Sum_probs=111.2
Q ss_pred EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCC-CCCCHHHHHH
Q 019594 11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN-VPRTVHEVIA 89 (338)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~ll~ 89 (338)
.+++++|++++.+.. ++..+... +.+++||+++++|||+++. +...++.+++++.++.+. ...++..+++
T Consensus 104 ~~~d~lfivl~~~~~-~~~~~~~~-~~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~ 174 (269)
T 2bbh_A 104 FFENYVFIVLKMFTY-DKNLHELE-SEQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLY 174 (269)
T ss_dssp ECSSEEEEEEEEEEC-CC--CCCE-EEEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTGGGSCHHHHHH
T ss_pred EECCEEEEEEEeeee-cCCcCcee-EEEEEEEEECCEEEEEECC-------CCCcHHHHHHHHHhcCCchhhCCHHHHHH
Confidence 488999999999876 43322112 3789999999999999997 678899999999876311 2357778999
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hh
Q 019594 90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HL 166 (338)
Q Consensus 90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l 166 (338)
+|++.++|+|.+ +++.+++++++||+.++.++.++ .+.+|+.+||+++.+||++.|+++++.+|.+ ..
T Consensus 175 ~lld~ivd~y~~-~l~~i~~~id~lE~~v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~ 245 (269)
T 2bbh_A 175 SLIDALVDDYFV-LLEKIDDEIDVLEEEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL 245 (269)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999 99999999999999999876433 3679999999999999999999999999985 23
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 019594 167 RGNVARTLLEGIRKNAREMIEEQE 190 (338)
Q Consensus 167 ~~~~~~~~l~dv~d~~~~l~~~l~ 190 (338)
.+++.+.+++|+.||+.++.+.++
T Consensus 246 ~~~~~~~~lrDv~dh~~r~~e~~e 269 (269)
T 2bbh_A 246 IEKETVPYFRDVYDHTIQIADTVE 269 (269)
T ss_dssp TC----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcC
Confidence 455688999999999999987653
No 7
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.74 E-value=1.6e-17 Score=154.02 Aligned_cols=154 Identities=11% Similarity=0.032 Sum_probs=130.7
Q ss_pred EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594 11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH 90 (338)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~ 90 (338)
.+++++|++++.+.. ++ .. . +.+++||+++++|||+++. +...++.+++++.+++.....++..++++
T Consensus 109 ~~~d~lfivl~~~~~-~~--~~-~-~~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~ll~~ 176 (266)
T 2hn1_A 109 DYDDHLFLVLKILLY-NE--TL-E-IDQLSLVLKKNLVATFEER-------EYWILDSIRSRLKSGGRMRKLAGDYLAYT 176 (266)
T ss_dssp ECSSEEEEEEEEEEE-SS--SE-E-EEEEEEEEETTEEEEEESS-------SSCSTHHHHHHHHSSSHHHHSCHHHHHHH
T ss_pred EECCEEEEEEEeccc-cC--cc-c-eEEEEEEEECCEEEEEEcC-------CCChHHHHHHHHHhCCchhhcCHHHHHHH
Confidence 488999999999886 43 22 2 4788999999999999997 67889999999987631012678889999
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhc
Q 019594 91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLR 167 (338)
Q Consensus 91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~ 167 (338)
|++.++|.|.+ +++.+++++++||+.++.++. +. +.+|+.+||+++.+||++.|+++++.+|.+ ...
T Consensus 177 lld~ivd~y~~-~l~~i~~~id~lE~~l~~~~~-~~--------l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~ 246 (266)
T 2hn1_A 177 ILDAVVDSYFE-ALLKISDEIEVLEDEVVSGDS-TL--------IGKIHSLKREILAFRNAVWPLRDVLSFFTRVEHELI 246 (266)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTC-CC--------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCTTS
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 99999999999 999999999999999998765 42 579999999999999999999999999985 233
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 019594 168 GNVARTLLEGIRKNAREMI 186 (338)
Q Consensus 168 ~~~~~~~l~dv~d~~~~l~ 186 (338)
.++.+.+++|+.||+.++.
T Consensus 247 ~~~~~~~lrDv~dh~~r~~ 265 (266)
T 2hn1_A 247 GEEVKVYYRDVYDHAVRLM 265 (266)
T ss_dssp CTTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5568899999999998875
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=95.64 E-value=1.4 Score=41.76 Aligned_cols=166 Identities=12% Similarity=0.146 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR 179 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~ 179 (338)
.++.+..-++.+++++-.=... ++ ...-....+++..+||.+...+..+..+.. .+........-.+..
T Consensus 189 ivd~y~~~l~~l~~~id~lE~~----v~----~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~ 260 (363)
T 2iub_A 189 LVDDYFVLLEKIDDEIDVLEEE----VL----ERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETV 260 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TT----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hh----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHH
Confidence 5677777788888776532110 00 001124456788888888888777766553 344322222235666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCch--HH
Q 019594 180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYA--FG 257 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~g--f~ 257 (338)
..++.+.+++..+.+.++.+.|...+..+..++...|+.=.++-++|++-+...-.|=+-|. |+ |=.-. -|.- .|
T Consensus 261 ~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGi-yG-MNf~~-mPel~~~~ 337 (363)
T 2iub_A 261 PYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGI-YG-MNFEY-MPELRWKW 337 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc-ccCCC-CCcccCcH
Confidence 77888999999999999999999999999999999999999999999999999999999996 55 76654 5653 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594 258 LFTAILFFIGVVLIAVGLLYLGLKKP 283 (338)
Q Consensus 258 ~~~~imv~i~~~l~~~~~~~~~~~~~ 283 (338)
...+++ ++++.+++.-+..=|.
T Consensus 338 Gy~~~l----~~m~~i~~~~~~~Fkr 359 (363)
T 2iub_A 338 GYPVVL----AVMGVIAVIMVVYFKK 359 (363)
T ss_dssp -CHHHH----HHHHHHHHHHHTTTTS
T ss_pred HHHHHH----HHHHHHHHHHHHHHHH
Confidence 333332 3345567766655443
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=95.49 E-value=0.24 Score=46.74 Aligned_cols=172 Identities=10% Similarity=0.122 Sum_probs=112.2
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hh
Q 019594 90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HL 166 (338)
Q Consensus 90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l 166 (338)
.++..+.| . .++.+..-++++++++..=... ++ ...=....+++..+|+.+...+..+..... .+
T Consensus 156 ~ll~~lld---~-ivd~~~~~l~~l~~~i~~lE~~----l~----~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L 223 (339)
T 4ev6_A 156 FLLYHILN---E-ITRSYSRILMNLEDELEELEDK----LL----AGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLL 223 (339)
T ss_dssp HHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHT----ST----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHh----hh----hhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 35555554 3 5677777888888876532110 00 011124566788888888777776655442 23
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594 167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI 246 (338)
Q Consensus 167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~m 246 (338)
........-.+....++.+.+++..+.+.++...+...+..+..++...|+.=.++-++|++-+...-.|=+-|. |+ |
T Consensus 224 ~~~~~~~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi-yG-M 301 (339)
T 4ev6_A 224 KRKYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI-YG-M 301 (339)
T ss_dssp HHSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH-TT-C
T ss_pred hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc-C
Confidence 222122223456677888999999999999999999999998889999999888888888888888888888886 54 7
Q ss_pred CCCCCCCch--HHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594 247 PGADNTPYA--FGLFTAILFFIGVVLIAVGLLYLGL 280 (338)
Q Consensus 247 P~l~~~~~g--f~~~~~imv~i~~~l~~~~~~~~~~ 280 (338)
=.-. -|.. -|.+.+++ ++++.+++..+..
T Consensus 302 Nf~~-mPel~~~~gy~~~l----~~m~~~~~~~~~~ 332 (339)
T 4ev6_A 302 NFSY-LPLANNPQGFWLVM----ALMVVIIMIFVYI 332 (339)
T ss_dssp CCSC-CTTSSCTTHHHHHH----HHHHHHHHHHHHH
T ss_pred cCCC-CCCccCchHHHHHH----HHHHHHHHHHHHH
Confidence 6544 5543 34454443 3344566665543
No 10
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=80.85 E-value=8.3 Score=34.25 Aligned_cols=104 Identities=6% Similarity=-0.041 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR 179 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~ 179 (338)
.++.+..-++++++++..=... +...-....+++..+||.+...+..+.-+.. .+........-.+..
T Consensus 156 ivd~y~~~l~~l~~~id~lE~~---------l~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~ 226 (264)
T 3nvo_A 156 LTDHASEFIEELHDKIIDLEDN---------LLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHR 226 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-------------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HhcCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHH
Confidence 5677778888888877542211 1111123456789999999888887776653 454332222335667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSL 216 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N 216 (338)
..++.+.+++..+.+.++.+.|...++.. ..++++|
T Consensus 227 ~~l~Dv~d~~~~~~e~~~~~re~l~~l~d-~~~s~~~ 262 (264)
T 3nvo_A 227 RRMQDIADRLGRGLDEIDACIARTGIMAD-EIAQVMQ 262 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Confidence 78889999999999999999888877763 3444454
No 11
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=77.41 E-value=7.2 Score=35.18 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR 179 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~ 179 (338)
+++.+..-++.+++++-.=.. .++. ... ....+++..+||.+...+..+..+.. .+........-.+..
T Consensus 165 ivd~y~~~l~~i~~~id~lE~----~l~~-~~~---~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~ 236 (280)
T 4egw_A 165 ITRSYSRILMNLEDELEELED----KLLA-GYD---REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDR 236 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HTTT-CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHh-CCc---hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccCCHHHH
Confidence 567777788888887653210 0010 011 23456778888888777776665543 333322222334566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLR 217 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~ 217 (338)
..++.+.+++..+.+.++...+...++++..++...|+
T Consensus 237 ~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~~ 274 (280)
T 4egw_A 237 ENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIK 274 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888889999999999998888887666666665
No 12
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=70.62 E-value=16 Score=32.14 Aligned_cols=100 Identities=10% Similarity=-0.021 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR 179 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~ 179 (338)
.++.+..-++.+++++-.= ++ + .....++..+||.+...+..+..+.. .+...... .-.+..
T Consensus 145 ivd~y~~~l~~l~~~id~l---E~----------~-~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~-~~~~~~ 209 (252)
T 3ck6_A 145 LNGKIDLYLDTIEETLNEF---DV----------N-DESTYNHIAAQKALISIKRFIRPQQYAIRDLIESESE-LVTSRP 209 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CT----------T-CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHH---Hc----------C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHH
Confidence 4666666777777766431 11 2 34566788888888887777766553 34332223 344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLR 217 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~ 217 (338)
..++.+.+.+..+.+.++.+.|...+.....++...|+
T Consensus 210 ~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~ 247 (252)
T 3ck6_A 210 HQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEK 247 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999888886666666554
No 13
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=57.30 E-value=86 Score=26.30 Aligned_cols=54 Identities=11% Similarity=0.178 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 019594 182 AREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGAD 250 (338)
Q Consensus 182 ~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~ 250 (338)
..++.++++..-+++......|...+ ..-|..+ --.|-++++|+||. +-+|..+
T Consensus 105 f~~Lq~eL~~~EnrIa~ARr~YN~aV-----~~yN~~i--------~~FP~~ivA~l~gf--~~~~~f~ 158 (171)
T 2etd_A 105 FRQLMDELAGTENRIAVARRDYNEAV-----XXYNTAI--------XXFPGVIFAXMFGF--EEXQYFE 158 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--------CC----------CC--CCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhccc--------ccCcHHHHHHHhCC--CCCchhh
Confidence 44456666677777777777777776 3455422 22599999999986 4456544
No 14
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=41.46 E-value=79 Score=24.88 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=26.4
Q ss_pred HHHHHHHH-HHHhhhccCCC-CCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 019594 226 GGCGVVLT-VITGLFGINVD-GIPGADNTPYAFGLFTAILFFIGVVLIAVG 274 (338)
Q Consensus 226 s~IflPlT-~ItGifGMNf~-~mP~l~~~~~gf~~~~~imv~i~~~l~~~~ 274 (338)
.-|.+|+- .++| |.||. ++-... ..||-++..++-+++.+..+++.
T Consensus 56 ~dIImPlIg~l~g--g~df~~~l~~~~-i~yG~Fi~avInFlIiA~viF~~ 103 (114)
T 3hzq_A 56 ENIIMPLIGKIFG--SVDFAKEWSFWG-IKYGLFIQSVIDFIIIAFALFIF 103 (114)
T ss_dssp HHTHHHHHHHSSS--CSCCCTTCCCSS-CCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCcccCeeeee-eeHHHHHHHHHHHHHHHHHHHHH
Confidence 33556652 2233 67888 665444 67997777766555555444433
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.34 E-value=3e+02 Score=27.34 Aligned_cols=25 Identities=8% Similarity=-0.172 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHH
Q 019594 89 AHLACRLSRWDDRLFRKTIFGAADEI 114 (338)
Q Consensus 89 ~~Ll~~l~d~~~~~~~~~i~~~ld~L 114 (338)
..+++..-..+.. .++.|..+++++
T Consensus 52 QglLdkqErDltk-rINELKnqLEdl 76 (562)
T 3ghg_A 52 KGLIDEVNQDFTN-RINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHTHH
T ss_pred hhhHHhhcCcHHH-HHHHHHHHHHHH
Confidence 3344443333333 455555555555
No 16
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=38.89 E-value=6.4 Score=35.26 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCC---CchHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019594 271 IAVGLLYLGLKKP---ITEEQVEVRKLELQELVKKFQHEAETHAQV 313 (338)
Q Consensus 271 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (338)
+++|-+||.+|.| .+-|+.|.-+= ++-++|.|..+.++++|
T Consensus 230 f~~ga~~wk~k~~~~~~~~e~iq~~~e--~ne~smlq~~~~e~~~v 273 (273)
T 1scf_A 230 FAFGALYWKKRQPSLTRAVENIQINEE--DNEISMLQEKEREFQEV 273 (273)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHhhcccCCccchhhhhcccccc--hhHHHHHHHhhhhhccC
Confidence 3577788777764 33455555533 67788888887777654
No 17
>2qij_C Core antigen; viral capsid protein, icosahedral virus; 8.90A {Hepatitis b virus subtype adyw}
Probab=35.74 E-value=8.4 Score=31.41 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=9.6
Q ss_pred HHHHHhhhccCCCCCCCCCCCCch
Q 019594 232 LTVITGLFGINVDGIPGADNTPYA 255 (338)
Q Consensus 232 lT~ItGifGMNf~~mP~l~~~~~g 255 (338)
+|.||++|||+.+-.++.. .++-
T Consensus 1 ~~~~~WLWGMDIDPYKEFg-AsvE 23 (157)
T 2qij_C 1 MTMITDSLEFHIDPYKEFG-ATVE 23 (157)
T ss_dssp ---------CCCCTTGGGT-CCHH
T ss_pred CceeeeecccccCcccccc-chHH
Confidence 3789999999999777666 4443
No 18
>2lcn_A WALP19-P10 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=33.57 E-value=48 Score=18.47 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 019594 254 YAFGLFTAILFFIGVVLIAV 273 (338)
Q Consensus 254 ~gf~~~~~imv~i~~~l~~~ 273 (338)
.|||..+++.-.+++.++|.
T Consensus 1 ~gwwlalalapalalalwwa 20 (26)
T 2lcn_A 1 XGWWLALALAPALALALWWA 20 (26)
T ss_pred ChHHHHHHHhHHHHHHHHHH
Confidence 38888888877776666553
No 19
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.02 E-value=2.7e+02 Score=23.65 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHHHHH
Q 019594 135 NQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNV-ARTLLEGIRKNAREMIEEQEAVR 193 (338)
Q Consensus 135 ~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~~~~-~~~~l~dv~d~~~~l~~~l~~~r 193 (338)
.+.+.+.+.++-.++..+.-..+++......-.... +...++++++.|+++-..+..+.
T Consensus 68 ~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li 127 (186)
T 1oxz_A 68 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLA 127 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777776665555554444332111112 34677777777776665554444
No 20
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=28.79 E-value=61 Score=27.46 Aligned_cols=44 Identities=14% Similarity=-0.095 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCC--------CCCCCchHHHHHHHHHHHHHHHH
Q 019594 225 FGGCGVVLTVITGLFGINVDGIPG--------ADNTPYAFGLFTAILFFIGVVLI 271 (338)
Q Consensus 225 vs~IflPlT~ItGifGMNf~~mP~--------l~~~~~gf~~~~~imv~i~~~l~ 271 (338)
+.-|.+|+--+. =|.||.++-. .. ..||-++..++-+++.+..+
T Consensus 58 V~dIImPlIgl~--Gg~dfs~l~~~l~~~~~~~~-i~yG~Fi~avInFlIIA~vI 109 (174)
T 2oar_A 58 TDSIITPLINRI--GVNAQSDVGILRIGIGGGQT-IDLNVLLSAAINFFLIAFAV 109 (174)
T ss_dssp HHHHHHHHHHHH--CCCCEEECCCCTTTCCSCEE-ECHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHhh--CCCCcccceEEEecCCCcee-eeHHHHHHHHHHHHHHHHHH
Confidence 455677764333 3678876531 12 46787776666554444333
No 21
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=28.58 E-value=2.1e+02 Score=23.04 Aligned_cols=49 Identities=8% Similarity=0.143 Sum_probs=33.7
Q ss_pred hHHHHHHHHHH-HHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019594 103 FRKTIFGAADE-IELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAR 155 (338)
Q Consensus 103 ~~~~i~~~ld~-LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~ 155 (338)
-+....+++++ |+.-+-++.+.+-+|. +.+-+..+|+++..+-+.+.|.
T Consensus 31 ~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~----IhGPlg~lr~~m~~l~~~Llp~ 80 (133)
T 3ls0_A 31 PIAVARDGMEKRLQGLIADQNWVDTQTY----IHGPLGQLRRDMLGLASSLLPK 80 (133)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCHHHHHHH----HHTTTTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHhHHHHHHHhhhcchHHHHHH----HhchHHHHHHHHHHHHHhcChh
Confidence 46777888888 9888877766443332 3456677888888877776443
No 22
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=27.48 E-value=2e+02 Score=21.79 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 137 EIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVR 193 (338)
Q Consensus 137 ~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~~~~~~~~l~dv~d~~~~l~~~l~~~r 193 (338)
++.+++.++-.++..+.-..+++....+.-........+.+++..|+++-..+..+.
T Consensus 7 q~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li 63 (103)
T 1wrd_A 7 QIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELI 63 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777766655555554433211112344566777777766655444433
No 23
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=27.12 E-value=59 Score=28.92 Aligned_cols=6 Identities=50% Similarity=0.899 Sum_probs=2.9
Q ss_pred CCchHH
Q 019594 252 TPYAFG 257 (338)
Q Consensus 252 ~~~gf~ 257 (338)
.+||+.
T Consensus 209 ~~~~~~ 214 (285)
T 3rvy_A 209 YPYAWV 214 (285)
T ss_dssp CTTTHH
T ss_pred CChHHh
Confidence 455543
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.80 E-value=2e+02 Score=28.62 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=9.9
Q ss_pred HHHH-HHHHHHHHHHHHhHH
Q 019594 136 QEIR-RLSRQVIRVKWSLHA 154 (338)
Q Consensus 136 ~~I~-~LRr~l~~lrr~l~~ 154 (338)
.++. .|||++.+|+.-+..
T Consensus 109 nE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3444 566666665554433
No 25
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=26.67 E-value=54 Score=18.66 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhccCCC
Q 019594 304 QHEAETHAQVRKNVRNNLT 322 (338)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~ 322 (338)
|..|.+|.|+++-.+..-|
T Consensus 4 qDaaakhkqLSeLLR~g~~ 22 (26)
T 1rdt_E 4 PDAASKHKQLSELLRGGSG 22 (26)
T ss_pred hhHHHHHHHHHHHHcCCCC
Confidence 7789999999887664433
No 26
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=26.36 E-value=73 Score=17.74 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019594 255 AFGLFTAILFFIGVVLIAV 273 (338)
Q Consensus 255 gf~~~~~imv~i~~~l~~~ 273 (338)
|||..++-.+.+++.++|.
T Consensus 2 gwwlalapalalalalwwa 20 (26)
T 2lco_A 2 GWWLALAPALALALALWWA 20 (26)
T ss_pred chHHHHhHHHHHHHHHHHH
Confidence 7888777666666555443
No 27
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=26.14 E-value=2.2e+02 Score=21.72 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019594 135 NQEIRRLSRQVIRVKWSLHAREEIVFELYQ 164 (338)
Q Consensus 135 ~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~ 164 (338)
+.++..-.+++..+.+.+....+++..|..
T Consensus 13 l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~ 42 (109)
T 3hd7_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAM 42 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666666665543
No 28
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=25.57 E-value=3.6e+02 Score=24.04 Aligned_cols=148 Identities=9% Similarity=0.030 Sum_probs=79.2
Q ss_pred EEEEEeCCEEEEEeecCCCCCCCCc------ccHHHHHHHHHcCCCCCCCCHHH--HHHHHHHHHHhhhhhHhHHHHHH-
Q 019594 39 LRSWQAQNFLITALHVKGPVSSNNV------LGITEVQELLFVGGYNVPRTVHE--VIAHLACRLSRWDDRLFRKTIFG- 109 (338)
Q Consensus 39 l~~~l~~~~LITv~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~--ll~~Ll~~l~d~~~~~~~~~i~~- 109 (338)
++.++..+.++-+.... +. ..+.++..++..+. ...-|.+ .+-+++..++..+.. -...++.
T Consensus 79 irAII~~d~Vllfd~~~------~~~~~~~~~f~~~l~~~l~~~~--~~~lPFEfraLEa~L~~v~~~Le~-e~~~l~~~ 149 (261)
T 3rkg_A 79 IKALIERDKVYVFDTTN------PSAAAKLSVLMYDLESKLSSTK--NNSQFYEHRALESIFINVMSALET-DFKLHSQI 149 (261)
T ss_dssp EEEEECSSCEEEECCSC------HHHHHHHHHHHHHHHHHHHCSS--CCSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred ceEEEEcceEEEEcCCC------chhhhhHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 56667777766664321 11 12334555665542 1223443 344555555554444 3333433
Q ss_pred ---HHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------hhcc----h----h
Q 019594 110 ---AADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ--------HLRG----N----V 170 (338)
Q Consensus 110 ---~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~--------~l~~----~----~ 170 (338)
-++++|..+ +.. -++++...++.+..+..-+...++.+.+++. .+.. . +
T Consensus 150 ~~~~L~~L~~~i----~~~--------~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~~~~d~eE 217 (261)
T 3rkg_A 150 CIQILNDLENEV----NRL--------KLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNFSD 217 (261)
T ss_dssp HHHHHHHHHHSC----CHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCCTTSCCHH
T ss_pred HHHHHHHHHhcC----CHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCCCccchHH
Confidence 445555433 111 3566777777888888888888888888873 1211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594 171 ARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV 207 (338)
Q Consensus 171 ~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~ 207 (338)
-...++.-..++..+.+.++.+++.+....|.+.-..
T Consensus 218 lEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~L 254 (261)
T 3rkg_A 218 LEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIIL 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333345566666666777766666666655554
No 29
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=25.45 E-value=2.3e+02 Score=22.21 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhh---ccCCCCCCC
Q 019594 222 LAVFGGCGVVLTVITGLF---GINVDGIPG 248 (338)
Q Consensus 222 LTivs~IflPlT~ItGif---GMNf~~mP~ 248 (338)
+..++++=.-++-++|.| | |.+ ||+
T Consensus 67 ~~Sf~tm~tAlNaLAGHY~s~g-~~P-lPe 94 (115)
T 2kmf_A 67 LKSFTTMQTALNSLAGYYTSYG-ARP-IPE 94 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS-SCC-CCH
T ss_pred cchHHHHHHHHHHHHHHHhhcC-CCC-CCH
Confidence 667777777788888876 7 777 885
No 30
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.92 E-value=3.1e+02 Score=22.63 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHHH
Q 019594 137 EIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNV-ARTLLEGIRKNAREMIEEQEA 191 (338)
Q Consensus 137 ~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~~~~-~~~~l~dv~d~~~~l~~~l~~ 191 (338)
.+.+.+.++-.++..+.-..+++....+.-.... +...+.++++.|.++-..+..
T Consensus 54 ~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~ 109 (158)
T 1naf_A 54 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFR 109 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554444333444333321100111 224556666666555444333
No 31
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=22.65 E-value=3e+02 Score=22.14 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-hhcch--hHHHHHHHHH
Q 019594 103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ-HLRGN--VARTLLEGIR 179 (338)
Q Consensus 103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~-~l~~~--~~~~~l~dv~ 179 (338)
.++.++.+++.||..++..+. ....+..+.+++...--. .-.++..|-. .++.+ ..+..-..+.
T Consensus 36 ~l~~l~~el~~iekGFL~k~l----------~~ea~~kl~Krik~~~E~---~Mk~LE~LDs~~ip~~~~~~R~kRK~lV 102 (135)
T 1i6z_A 36 HLQELNKELSGIQQGFLAKEL----------QAEALCKLDRKVKATIEQ---FMKILEEIDTMVLPEQFKDSRLKRKNLV 102 (135)
T ss_dssp HHHHHHHHHHHHHTSSSCHHH----------HHHHHHHHHHHHHHHHHH---HHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhh----------hhhHHHHHHHHHHHHHHH---HHHHHHHhccccCCccHHHHHHHHHHHH
Confidence 345556666666655554321 234556666655544111 1112222221 23322 2344444555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019594 180 KNAREMIEEQEAVRGRLFT 198 (338)
Q Consensus 180 d~~~~l~~~l~~~re~l~~ 198 (338)
+.+...+..+|.++.++..
T Consensus 103 ~~iQ~~L~~~D~l~~~~~~ 121 (135)
T 1i6z_A 103 KKVQVFLAECDTVEQYICQ 121 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666655555443
No 32
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=21.08 E-value=3e+02 Score=21.46 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhh---ccCCCCCCC
Q 019594 222 LAVFGGCGVVLTVITGLF---GINVDGIPG 248 (338)
Q Consensus 222 LTivs~IflPlT~ItGif---GMNf~~mP~ 248 (338)
+..++++=.-++-++|.| | |.+ ||+
T Consensus 63 ~~Sfttm~tAlNaLAGHY~s~g-~~P-lPe 90 (113)
T 2y6x_A 63 LSSFMTMQTALNSLAGHYSSYP-NRP-LPE 90 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCT-TSC-CCH
T ss_pred cchHHHHHHHHHHHHHHHhhcC-CCC-CCH
Confidence 777777778889999987 7 777 885
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.95 E-value=5.4e+02 Score=24.38 Aligned_cols=12 Identities=0% Similarity=-0.122 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 019594 104 RKTIFGAADEIE 115 (338)
Q Consensus 104 ~~~i~~~ld~LE 115 (338)
++.|...++++.
T Consensus 69 Ie~L~~~L~~~s 80 (390)
T 1deq_A 69 INKLRDSLFNYQ 80 (390)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 34
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=20.58 E-value=3.3e+02 Score=21.84 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHHHHH
Q 019594 137 EIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNV-ARTLLEGIRKNAREMIEEQEAVR 193 (338)
Q Consensus 137 ~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~~~~-~~~~l~dv~d~~~~l~~~l~~~r 193 (338)
.+.+.+.++-.++..+.-..+++....+.-.... +...+.++++.|.++-..+..+.
T Consensus 45 ~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li 102 (140)
T 1o3x_A 45 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444443332111112 34566666666666554444433
Done!