BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019595
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 67.8 bits (164), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 136 VLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRER 195
VL + P W+PDS CM C FT T+ RHHCR CG VFC +C +C L +E
Sbjct: 6 VLGQKQPTWVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQYLEKE- 63
Query: 196 NPQRVCDACYDRLDPLQG 213
RVC CY+ + Q
Sbjct: 64 --ARVCVVCYETISKAQA 79
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 143 EWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCD 202
+W D+ CM C F+ R RHHCR CG +FC C+ L P + P RVCD
Sbjct: 2 KWAEDNEVQNCMACGKGFSVTVR-RHHCRQCGNIFCAECSAKNALTP---SSKKPVRVCD 57
Query: 203 ACYDRL 208
AC++ L
Sbjct: 58 ACFNDL 63
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 144 WLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA 203
WL D T C QC F+ ++R +HHCR CG +FC C+ LP + P RVCD+
Sbjct: 13 WLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNELALPSYPK---PVRVCDS 68
Query: 204 CYDRL 208
C+ L
Sbjct: 69 CHTLL 73
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 143 EWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCD 202
+W D+ CM C F+ R RHHCR CG +FC C+ L P + P RVCD
Sbjct: 62 KWAEDNEVQNCMACGKGFSVTVR-RHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCD 117
Query: 203 ACYDRL 208
AC++ L
Sbjct: 118 ACFNDL 123
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 134 KEVLEA-EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRF 192
KEV +A + WL D T C QC F+ ++R +HHCR CG +FC C+ LP
Sbjct: 9 KEVNQALKGHAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNELALPSYP 67
Query: 193 RERNPQRVCDACYDRL 208
+ P RVCD+C+ L
Sbjct: 68 K---PVRVCDSCHTLL 80
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 144 WLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA 203
W D C C FT R RHHCR CG V C C++ R +P+R P+RVCDA
Sbjct: 15 WQEDEDAPACNGCGCVFTTTVR-RHHCRNCGYVLCGDCSRHRAAIPMRGIT-EPERVCDA 72
Query: 204 CY 205
CY
Sbjct: 73 CY 74
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 137 LEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERN 196
L PP +P + C C F+ LT RHHC CG + CR C++ + P+++ +
Sbjct: 362 LGERPPTLVPVTHVXXCXNCGCDFS-LTLRRHHCHACGKIVCRNCSRNK--YPLKYLKDR 418
Query: 197 PQRVCDACYDRL 208
+VCD C+ L
Sbjct: 419 XAKVCDGCFGEL 430
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 107 DTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRG 166
DTY V P E D + + A + P+W+ C +C F +TR
Sbjct: 131 DTYQIMKVEGHVFPEFKESDAM-FAAER------APDWVDAEE---CHRCRVQFGVMTR- 179
Query: 167 RHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209
+HHCR CG +FC C+ +P +F RVC+ CY++L+
Sbjct: 180 KHHCRACGQIFCGKCSSKYSTIP-KFGIEKEVRVCEPCYEQLN 221
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 142 PEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVC 201
P W + VC +C FT T +HHCR CG VFC CT +C LP ++ RVC
Sbjct: 156 PNW---ADGRVCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQCPLP-KYGIEKEVRVC 210
Query: 202 DACYDRL 208
D C+ L
Sbjct: 211 DGCFAAL 217
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRV 200
P +W+ + CM C+ F+ L R +HHCR CGGVFC+ + LP P RV
Sbjct: 5 PADWI---DSDACMICSKKFSLLNR-KHHCRSCGGVFCQEHSSNSIPLP-DLGIYEPVRV 59
Query: 201 CDACYD 206
CD+C++
Sbjct: 60 CDSCFE 65
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 ITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPS 118
I+G+ K+P E VSF GS K G Y+ + IPS
Sbjct: 47 ISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPS 88
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 132 AYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHC 170
+Y + LE +P WLP+ + V PF+A G+ C
Sbjct: 375 SYDDNLEFDPDRWLPERAANVPKYAMKPFSA---GKRKC 410
>pdb|3J21|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 239
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 253 YKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKL 301
Y TLR + +P R+ P+A + G+ L +A G+LV ++
Sbjct: 35 YTQEKTLRGVVEEIMHDPGRTAPVARVKFENGIEKLIIAPEGLLVGQEI 83
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 66 LKNVLSGIFAIITGQNKTPSDCMNQQESSSNV-SFFGSGKNGDTYL 110
+ N+L+GI + G+ K D ++ + S+ V + G+ G+TYL
Sbjct: 206 ITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYL 251
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From Mus
Musculus
Length = 88
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 153 CMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERN-PQRVCDACYDRL 208
C C FT L + + C+ CG FC C L+P R N Q+VC C+ L
Sbjct: 12 CYGCAVKFT-LFKKEYGCKNCGRAFCNGCLSFSALVP---RAGNTQQKVCKQCHTIL 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,662,619
Number of Sequences: 62578
Number of extensions: 442692
Number of successful extensions: 1019
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 18
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)