Query 019595
Match_columns 338
No_of_seqs 377 out of 1542
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 99.8 1.6E-21 5.4E-26 154.0 3.4 70 140-211 11-80 (84)
2 1x4u_A Zinc finger, FYVE domai 99.8 4.2E-21 1.4E-25 151.5 5.7 71 140-211 4-79 (84)
3 2yw8_A RUN and FYVE domain-con 99.8 1E-20 3.6E-25 148.6 3.9 67 140-210 9-75 (82)
4 3t7l_A Zinc finger FYVE domain 99.8 8E-21 2.7E-25 151.9 2.6 72 137-212 7-78 (90)
5 1vfy_A Phosphatidylinositol-3- 99.8 9.5E-21 3.3E-25 145.8 1.4 67 140-211 4-70 (73)
6 1joc_A EEA1, early endosomal a 99.8 6.3E-20 2.1E-24 155.0 3.2 66 140-209 59-124 (125)
7 3zyq_A Hepatocyte growth facto 99.7 1.6E-18 5.4E-23 159.7 2.7 68 138-210 155-222 (226)
8 1wfk_A Zinc finger, FYVE domai 99.7 3.5E-18 1.2E-22 136.1 3.7 62 147-211 6-67 (88)
9 1dvp_A HRS, hepatocyte growth 99.7 3.1E-18 1.1E-22 156.7 3.3 66 139-209 153-218 (220)
10 3mpx_A FYVE, rhogef and PH dom 99.6 4.6E-17 1.6E-21 160.8 0.0 70 138-210 363-432 (434)
11 1y02_A CARP2, FYVE-ring finger 99.6 5.9E-17 2E-21 135.9 0.7 59 141-209 10-68 (120)
12 2vrw_B P95VAV, VAV1, proto-onc 97.9 2.9E-06 1E-10 82.9 2.0 45 140-184 347-391 (406)
13 1zbd_B Rabphilin-3A; G protein 96.5 0.0012 4.3E-08 55.8 3.0 55 148-207 53-107 (134)
14 2zet_C Melanophilin; complex, 96.1 0.0016 5.3E-08 56.4 1.4 50 150-207 68-117 (153)
15 3ky9_A Proto-oncogene VAV; cal 95.3 0.006 2.1E-07 62.5 2.4 43 142-184 521-563 (587)
16 2csz_A Synaptotagmin-like prot 94.1 0.028 9.5E-07 43.1 2.7 51 149-208 24-74 (76)
17 1wff_A Riken cDNA 2810002D23 p 91.9 0.17 5.9E-06 39.5 4.4 31 148-181 23-53 (85)
18 1wfh_A Zinc finger (AN1-like) 91.3 0.15 5E-06 37.8 3.2 29 149-181 14-42 (64)
19 1wfp_A Zinc finger (AN1-like) 90.5 0.29 9.8E-06 37.2 4.2 30 148-181 23-52 (74)
20 1wfl_A Zinc finger protein 216 90.0 0.33 1.1E-05 36.9 4.1 29 149-181 24-52 (74)
21 1wg2_A Zinc finger (AN1-like) 87.4 0.43 1.5E-05 35.3 3.2 29 149-181 14-42 (64)
22 1z60_A TFIIH basal transcripti 84.0 0.095 3.3E-06 38.2 -1.8 30 151-182 16-45 (59)
23 1iym_A EL5; ring-H2 finger, ub 83.1 0.58 2E-05 31.8 2.1 50 149-208 4-53 (55)
24 2ect_A Ring finger protein 126 82.1 0.74 2.5E-05 33.7 2.4 51 149-210 14-64 (78)
25 1x4j_A Ring finger protein 38; 81.2 0.24 8E-06 36.4 -0.6 52 149-211 22-73 (75)
26 3lrq_A E3 ubiquitin-protein li 80.6 0.27 9.2E-06 38.5 -0.5 48 151-210 23-70 (100)
27 1x4w_A Hypothetical protein FL 80.3 0.82 2.8E-05 34.1 2.1 32 148-181 13-45 (67)
28 2yur_A Retinoblastoma-binding 80.0 0.49 1.7E-05 34.7 0.8 49 151-210 16-64 (74)
29 2e72_A POGO transposable eleme 79.0 0.39 1.3E-05 33.6 -0.1 35 142-177 5-40 (49)
30 2ysl_A Tripartite motif-contai 78.8 0.72 2.5E-05 33.2 1.4 50 150-210 20-69 (73)
31 2ecm_A Ring finger and CHY zin 78.7 1.3 4.6E-05 29.9 2.7 50 149-208 4-53 (55)
32 1bor_A Transcription factor PM 78.6 2 6.9E-05 29.7 3.6 45 148-209 4-48 (56)
33 2a20_A Regulating synaptic mem 78.4 1.7 5.9E-05 31.6 3.2 53 148-207 7-60 (62)
34 2ecl_A Ring-box protein 2; RNF 75.0 1.1 3.8E-05 33.5 1.5 60 141-209 6-75 (81)
35 1jm7_B BARD1, BRCA1-associated 74.1 1.8 6E-05 34.5 2.6 44 151-209 23-66 (117)
36 2egp_A Tripartite motif-contai 73.0 1.2 4E-05 32.5 1.2 54 150-210 12-65 (79)
37 1twf_L ABC10-alpha, DNA-direct 70.9 1.6 5.5E-05 32.7 1.5 26 150-175 28-53 (70)
38 2ep4_A Ring finger protein 24; 68.4 0.92 3.1E-05 32.9 -0.3 52 149-211 14-65 (74)
39 2ecv_A Tripartite motif-contai 68.3 1 3.6E-05 33.0 -0.0 53 150-210 19-71 (85)
40 2kiz_A E3 ubiquitin-protein li 68.1 2.9 9.8E-05 29.7 2.4 52 148-210 12-63 (69)
41 2y43_A E3 ubiquitin-protein li 65.6 1.1 3.6E-05 34.6 -0.5 47 151-210 23-69 (99)
42 1chc_A Equine herpes virus-1 r 65.6 3.4 0.00012 29.1 2.3 49 149-210 4-52 (68)
43 1jm7_A BRCA1, breast cancer ty 65.1 1.3 4.6E-05 34.5 0.0 48 151-209 22-69 (112)
44 2ecn_A Ring finger protein 141 64.7 1.1 3.6E-05 32.1 -0.6 48 149-211 14-61 (70)
45 2d8t_A Dactylidin, ring finger 64.4 1.6 5.5E-05 31.4 0.4 48 149-210 14-61 (71)
46 2ct2_A Tripartite motif protei 64.2 2.4 8E-05 31.4 1.3 54 150-210 15-68 (88)
47 2jrp_A Putative cytoplasmic pr 63.4 7.4 0.00025 29.9 3.9 56 151-210 3-63 (81)
48 2ecw_A Tripartite motif-contai 62.6 1.3 4.4E-05 32.5 -0.5 53 150-210 19-71 (85)
49 1e4u_A Transcriptional repress 62.3 2.8 9.5E-05 31.5 1.4 52 149-210 10-62 (78)
50 2l0b_A E3 ubiquitin-protein li 60.4 1.1 3.6E-05 34.3 -1.4 50 149-209 39-88 (91)
51 2ecy_A TNF receptor-associated 59.9 1.1 3.8E-05 31.8 -1.2 48 150-210 15-62 (66)
52 2ecj_A Tripartite motif-contai 59.7 2.1 7E-05 29.2 0.2 31 150-185 15-45 (58)
53 2djb_A Polycomb group ring fin 58.9 4.1 0.00014 29.3 1.7 48 150-210 15-62 (72)
54 3fl2_A E3 ubiquitin-protein li 58.5 1.7 5.7E-05 34.9 -0.5 47 151-210 53-99 (124)
55 3l11_A E3 ubiquitin-protein li 58.3 2.7 9.3E-05 33.1 0.7 47 151-210 16-62 (115)
56 2ysj_A Tripartite motif-contai 58.2 3.3 0.00011 28.8 1.1 31 150-185 20-50 (63)
57 1t1h_A Gspef-atpub14, armadill 56.8 2.1 7.3E-05 31.2 -0.2 48 150-210 8-55 (78)
58 1x4v_A Hypothetical protein LO 56.3 8.1 0.00028 28.3 2.9 27 150-180 12-40 (63)
59 2ckl_B Ubiquitin ligase protei 55.6 2.9 9.8E-05 35.2 0.4 48 151-210 55-102 (165)
60 2csy_A Zinc finger protein 183 54.3 4.6 0.00016 29.6 1.3 46 150-209 15-60 (81)
61 2ckl_A Polycomb group ring fin 53.2 3.4 0.00012 32.2 0.4 47 151-210 16-62 (108)
62 2ct7_A Ring finger protein 31; 53.0 7.6 0.00026 29.5 2.5 33 151-183 26-59 (86)
63 1v87_A Deltex protein 2; ring- 52.9 2.5 8.6E-05 33.1 -0.3 56 151-210 26-94 (114)
64 2ea6_A Ring finger protein 4; 51.5 3.4 0.00012 28.9 0.2 52 149-209 14-67 (69)
65 4gzn_C ZFP-57, zinc finger pro 51.3 5.5 0.00019 28.1 1.3 26 152-177 6-42 (60)
66 4ayc_A E3 ubiquitin-protein li 51.1 2.7 9.2E-05 34.5 -0.5 46 151-210 54-99 (138)
67 2jne_A Hypothetical protein YF 50.6 8.1 0.00028 30.8 2.2 25 151-176 33-57 (101)
68 3ng2_A RNF4, snurf, ring finge 50.3 3.3 0.00011 29.3 -0.0 53 149-210 9-63 (71)
69 2lv2_A Insulinoma-associated p 48.9 10 0.00036 28.5 2.6 13 150-162 28-40 (85)
70 2xeu_A Ring finger protein 4; 48.8 3.1 0.00011 28.7 -0.4 52 150-210 3-56 (64)
71 3ztg_A E3 ubiquitin-protein li 47.6 4.3 0.00015 30.4 0.3 48 150-208 13-60 (92)
72 2lce_A B-cell lymphoma 6 prote 47.4 14 0.00049 25.7 3.1 14 149-162 16-29 (74)
73 3uk3_C Zinc finger protein 217 47.1 10 0.00035 24.7 2.1 12 151-162 5-16 (57)
74 1wim_A KIAA0161 protein; ring 46.9 5.6 0.00019 30.2 0.8 55 150-207 5-61 (94)
75 2y1n_A E3 ubiquitin-protein li 46.6 3.2 0.00011 40.7 -0.8 48 151-211 333-380 (389)
76 3j20_Y 30S ribosomal protein S 46.5 8.1 0.00028 26.8 1.5 28 150-177 19-47 (50)
77 3cc2_Z 50S ribosomal protein L 45.1 6.2 0.00021 32.3 0.8 31 150-180 60-91 (116)
78 1bbo_A Human enhancer-binding 43.0 13 0.00045 24.2 2.2 10 152-161 3-12 (57)
79 1wys_A Riken cDNA 2310008M20 p 42.6 16 0.00053 27.6 2.7 29 150-182 14-44 (75)
80 4ap4_A E3 ubiquitin ligase RNF 42.0 2.1 7.3E-05 33.9 -2.4 54 148-210 70-125 (133)
81 3h0g_L DNA-directed RNA polyme 42.0 15 0.00052 26.8 2.4 26 150-175 21-46 (63)
82 1vd4_A Transcription initiatio 41.7 6 0.0002 27.2 0.2 11 151-161 15-25 (62)
83 2adr_A ADR1; transcription reg 41.5 14 0.00048 24.4 2.1 10 152-161 4-13 (60)
84 4a0k_B E3 ubiquitin-protein li 39.6 6.7 0.00023 31.9 0.2 58 142-208 40-110 (117)
85 1wd2_A Ariadne-1 protein homol 38.7 26 0.00091 24.9 3.3 36 149-184 5-43 (60)
86 2c2l_A CHIP, carboxy terminus 37.6 22 0.00075 31.5 3.4 48 150-210 208-255 (281)
87 2cot_A Zinc finger protein 435 37.4 37 0.0013 23.6 4.0 14 149-162 17-30 (77)
88 2ayj_A 50S ribosomal protein L 37.4 11 0.00039 26.9 1.1 23 150-175 19-41 (56)
89 2fiy_A Protein FDHE homolog; F 36.9 18 0.00062 34.2 2.8 63 149-211 181-266 (309)
90 3t6p_A Baculoviral IAP repeat- 36.6 18 0.00063 34.5 2.8 43 151-211 296-339 (345)
91 1x5w_A Zinc finger protein 64, 35.4 15 0.0005 25.3 1.4 11 151-161 10-20 (70)
92 2gmg_A Hypothetical protein PF 35.2 15 0.00051 29.6 1.6 9 152-160 69-77 (105)
93 1x6e_A Zinc finger protein 24; 34.6 15 0.00053 25.4 1.5 11 151-161 15-25 (72)
94 1z6u_A NP95-like ring finger p 34.5 10 0.00035 31.7 0.5 47 151-210 79-125 (150)
95 4ic3_A E3 ubiquitin-protein li 34.3 8.1 0.00028 28.1 -0.1 43 151-211 25-68 (74)
96 1g25_A CDK-activating kinase a 34.3 7 0.00024 27.3 -0.4 51 151-210 4-55 (65)
97 2eps_A POZ-, at HOOK-, and zin 33.9 15 0.00051 24.1 1.3 11 151-161 13-23 (54)
98 1gnf_A Transcription factor GA 33.7 18 0.0006 24.8 1.6 30 149-182 3-32 (46)
99 3k7a_M Transcription initiatio 33.3 23 0.00078 33.6 2.9 38 139-177 9-52 (345)
100 2ctd_A Zinc finger protein 512 33.2 14 0.00048 28.0 1.1 10 151-160 35-44 (96)
101 3htk_C E3 SUMO-protein ligase 32.8 9.9 0.00034 35.4 0.2 50 150-210 181-232 (267)
102 2jmo_A Parkin; IBR, E3 ligase, 32.4 47 0.0016 24.7 4.0 35 150-184 25-67 (80)
103 2d9h_A Zinc finger protein 692 32.4 15 0.00053 25.7 1.2 11 151-161 8-18 (78)
104 2gqj_A Zinc finger protein KIA 31.9 14 0.00047 27.6 0.9 11 151-161 25-35 (98)
105 2ecg_A Baculoviral IAP repeat- 31.9 11 0.00037 27.4 0.2 43 151-211 26-69 (75)
106 2lcq_A Putative toxin VAPC6; P 31.3 15 0.00053 30.8 1.2 24 151-175 133-156 (165)
107 3knv_A TNF receptor-associated 31.3 12 0.00041 30.9 0.5 46 150-208 31-76 (141)
108 1wfe_A Riken cDNA 2310008M20 p 31.3 19 0.00065 27.8 1.6 28 150-181 25-54 (86)
109 3j21_g 50S ribosomal protein L 31.2 20 0.00068 25.1 1.5 23 151-176 15-37 (51)
110 1pft_A TFIIB, PFTFIIBN; N-term 30.9 21 0.00073 24.0 1.6 8 151-158 6-13 (50)
111 3vk6_A E3 ubiquitin-protein li 30.5 8.3 0.00028 30.9 -0.6 53 151-215 2-54 (101)
112 2ea5_A Cell growth regulator w 29.8 20 0.0007 25.7 1.5 45 149-211 14-59 (68)
113 1vq8_Z 50S ribosomal protein L 29.0 17 0.00058 27.9 0.9 29 151-180 28-58 (83)
114 3j21_i 50S ribosomal protein L 29.0 22 0.00076 27.4 1.6 27 151-180 36-66 (83)
115 3iz5_m 60S ribosomal protein L 27.3 27 0.00094 27.4 1.9 26 151-179 37-66 (92)
116 2elu_A Zinc finger protein 406 26.1 16 0.00055 23.4 0.2 10 167-176 9-18 (37)
117 3jyw_9 60S ribosomal protein L 26.0 36 0.0012 25.5 2.2 26 151-179 27-56 (72)
118 2kvh_A Zinc finger and BTB dom 25.8 25 0.00087 18.8 1.1 11 167-177 3-13 (27)
119 1ffk_W Ribosomal protein L37AE 25.6 25 0.00085 26.4 1.3 29 149-180 26-58 (73)
120 3hct_A TNF receptor-associated 25.5 17 0.00059 28.6 0.4 47 151-210 19-65 (118)
121 2m0e_A Zinc finger and BTB dom 25.5 26 0.00088 18.7 1.1 10 168-177 3-12 (29)
122 2kdx_A HYPA, hydrogenase/ureas 25.4 26 0.00089 28.0 1.5 10 152-161 75-84 (119)
123 1rmd_A RAG1; V(D)J recombinati 25.3 18 0.00062 28.2 0.5 47 151-210 24-70 (116)
124 2yu4_A E3 SUMO-protein ligase 25.0 19 0.00063 27.4 0.5 31 151-185 8-38 (94)
125 2epr_A POZ-, at HOOK-, and zin 24.7 22 0.00075 22.5 0.8 11 151-161 13-23 (48)
126 3izc_m 60S ribosomal protein R 24.3 34 0.0011 26.9 1.8 26 151-179 37-66 (92)
127 2k4x_A 30S ribosomal protein S 24.2 42 0.0014 23.5 2.2 27 150-176 18-45 (55)
128 2fc7_A ZZZ3 protein; structure 24.0 32 0.0011 26.1 1.7 31 151-183 22-56 (82)
129 2ct1_A Transcriptional repress 23.9 29 0.00098 24.2 1.3 11 151-161 16-26 (77)
130 1ard_A Yeast transcription fac 23.9 26 0.00088 18.8 0.9 10 168-177 3-12 (29)
131 2kvf_A Zinc finger and BTB dom 23.8 30 0.001 18.6 1.2 12 167-178 3-14 (28)
132 2m0d_A Zinc finger and BTB dom 23.4 30 0.001 18.6 1.1 12 167-178 3-14 (30)
133 2dmd_A Zinc finger protein 64, 23.2 57 0.0019 23.3 2.9 12 151-162 9-20 (96)
134 3dpl_R Ring-box protein 1; ubi 23.1 23 0.00077 28.0 0.7 58 142-208 29-99 (106)
135 2wbt_A B-129; zinc finger; 2.7 22.8 25 0.00085 27.1 0.9 11 167-177 74-84 (129)
136 1rik_A E6APC1 peptide; E6-bind 22.7 32 0.0011 18.5 1.1 12 167-178 2-13 (29)
137 2ee8_A Protein ODD-skipped-rel 22.2 59 0.002 23.8 2.9 11 151-161 18-28 (106)
138 2m0f_A Zinc finger and BTB dom 22.1 32 0.0011 18.3 1.1 10 168-177 3-12 (29)
139 3k1f_M Transcription initiatio 22.1 37 0.0013 29.9 1.8 19 140-158 10-29 (197)
140 3hcs_A TNF receptor-associated 21.6 23 0.00079 29.6 0.5 48 150-210 18-65 (170)
141 3ifu_A Non-structural protein; 21.4 50 0.0017 28.0 2.5 19 173-191 20-38 (180)
142 2kmk_A Zinc finger protein GFI 21.3 37 0.0013 23.4 1.5 10 152-161 3-12 (82)
143 4ayb_P DNA-directed RNA polyme 20.6 59 0.002 22.5 2.2 24 152-175 5-31 (48)
144 2d8v_A Zinc finger FYVE domain 20.1 57 0.0019 24.1 2.2 29 149-183 7-36 (67)
145 2lvu_A Zinc finger and BTB dom 25.4 22 0.00076 18.9 0.0 13 167-179 2-14 (26)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.83 E-value=1.6e-21 Score=153.97 Aligned_cols=70 Identities=40% Similarity=0.816 Sum_probs=62.2
Q ss_pred CCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
..+.|+||+++..|+.|+++|+ +++||||||+||+|||++||+++..+|. ....+++|||+.||..|...
T Consensus 11 ~~~~W~pd~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 11 SKGYWQEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRSS 80 (84)
T ss_dssp CCSCCCCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHTS
T ss_pred CCCccccCCCCCCCcCcCCccc-cchhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhhc
Confidence 3679999999999999999999 6689999999999999999999998883 33368999999999988643
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-21 Score=151.50 Aligned_cols=71 Identities=24% Similarity=0.523 Sum_probs=61.1
Q ss_pred CCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCC-----CCcceeeccccccccccc
Q 019595 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFR-----ERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~-----~~~p~RVC~~C~~~l~~~ 211 (338)
..+.|+||+++..|+.|+++|+ +++||||||+||+|||+.|++++..+|.... ..+++|||+.||.+|...
T Consensus 4 ~~~~W~pd~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~ 79 (84)
T 1x4u_A 4 GSSGRYPTNNFGNCTGCSATFS-VLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKS 79 (84)
T ss_dssp CCCCSCSCCCCSSCSSSCCCCC-SSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSC
T ss_pred CCCccccCCCCCcCcCcCCccc-cchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhcc
Confidence 3678999999999999999999 6789999999999999999999988873211 137899999999988653
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.80 E-value=1e-20 Score=148.62 Aligned_cols=67 Identities=40% Similarity=0.921 Sum_probs=56.1
Q ss_pred CCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..+.|+||+++..|+.|+++|+ +++||||||+||+|||+.|++++..+|. ..+|+|||+.||..|..
T Consensus 9 ~~~~W~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 9 KGHAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp ------CCCCCCBCTTTCCBCB-TTBCCEECTTTCCEECSGGGCEEECCTT---CSSCEEECHHHHHHTTC
T ss_pred CCCccccCccCCcccCcCCccc-CccccccCCCCCCEEChHHhCCeeecCC---CCCcCEECHHHHHHHHH
Confidence 3578999999999999999999 6789999999999999999999988873 36899999999998864
No 4
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.80 E-value=8e-21 Score=151.88 Aligned_cols=72 Identities=43% Similarity=1.025 Sum_probs=63.9
Q ss_pred cccCCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccccc
Q 019595 137 LEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQ 212 (338)
Q Consensus 137 ~~~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~~ 212 (338)
+...+|.|++|+++..|+.|+++|+ +++||||||+||++||..|++++..+|. ..+++|||+.||..|+..+
T Consensus 7 l~~~~p~W~~d~~~~~C~~C~~~F~-~~~RrhhCr~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~~~ 78 (90)
T 3t7l_A 7 LGQKQPTWVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQY---LEKEARVCVVCYETISKAQ 78 (90)
T ss_dssp TTTSCCCCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEEEETT---TTEEEEECHHHHHHHHHHC
T ss_pred cCCCCCcCcccccCCcCcCCCCccc-chhhCccccCCCCEECCcccCCeeecCC---CCCCCeECHHHHHHHHHHh
Confidence 4556899999999999999999999 6789999999999999999999988873 2589999999999987543
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.79 E-value=9.5e-21 Score=145.75 Aligned_cols=67 Identities=37% Similarity=0.958 Sum_probs=56.2
Q ss_pred CCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
.+|.|+++ ..|+.|+++|+ +++||||||+||++||+.|++++..+|. ++..+|+|||+.||..|+..
T Consensus 4 ~~p~W~~~---~~C~~C~~~F~-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 4 TPADWIDS---DACMICSKKFS-LLNRKHHCRSCGGVFCQEHSSNSIPLPD-LGIYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp ---CCCCC---SBCTTTCCBCB-TTBCCEECTTTCCEECGGGSCEEEEEGG-GTEEEEEEECHHHHHHHHHH
T ss_pred CCCcCccC---CcccCCCCccC-CccccccCCCCCEEEcccccCCeEEccc-CCCCCCCEECHHHHHHHHHH
Confidence 48899997 58999999999 6789999999999999999999988873 44457999999999987543
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.77 E-value=6.3e-20 Score=155.03 Aligned_cols=66 Identities=41% Similarity=0.985 Sum_probs=59.9
Q ss_pred CCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
..|.|+||+++..|+.|+++|+ +++||||||+||+|||+.||+++..+|. ..+|+|||+.||..|+
T Consensus 59 ~~~~W~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~vfC~~Cs~~~~~~p~---~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 59 LNRKWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HHCCCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred CCCccccCCCCCCCcCcCCccc-cccccccCCCCCeEEChHHhCCccccCC---CCCCCEeCHHHHHHhc
Confidence 3678999999999999999999 6789999999999999999999988873 3689999999999874
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.71 E-value=1.6e-18 Score=159.72 Aligned_cols=68 Identities=32% Similarity=0.945 Sum_probs=59.5
Q ss_pred ccCCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 138 EAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 138 ~~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...+|.|+++ ..|+.|+++|+ +++||||||+||++||+.||+++..+| .++..+|+|||+.||+.|+.
T Consensus 155 ~~~~p~W~~~---~~C~~C~~~F~-~~~RrhHCR~CG~v~C~~Cs~~~~~~p-~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 155 AERAPDWVDA---EECHRCRVQFG-VMTRKHHCRACGQIFCGKCSSKYSTIP-KFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCCCCCCCCC---SBCTTTCCBCB-TTBCCEECTTTCCEECTTTCCEEEEEG-GGTEEEEEEECHHHHHHHCC
T ss_pred cccccccccC---CCCcCcCCCCC-ccccccccCCCcCEeChhhcCCcccCC-CCCCCCCCEeCHHHHHHhhh
Confidence 4458999986 58999999999 678999999999999999999998888 34456899999999998864
No 8
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.70 E-value=3.5e-18 Score=136.08 Aligned_cols=62 Identities=29% Similarity=0.611 Sum_probs=54.0
Q ss_pred CCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 147 DSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 147 d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
++++..|+.|+++|+ +++||||||+||+|||+.|++++..+|. + ..+++|||+.||..|...
T Consensus 6 ~~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~lp~-~-g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 6 SGMESRCYGCAVKFT-LFKKEYGCKNCGRAFCNGCLSFSALVPR-A-GNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCCCSBCTTTCCBCC-SSSCEEECSSSCCEEETTTSCEEEEETT-T-TSEEEEECHHHHHHHHHC
T ss_pred CCcCCCCcCcCCccc-CccccccCCCCCCEEChhHcCCceeccc-c-CCCcCEECHHHHHHHHhc
Confidence 356789999999999 6689999999999999999999998883 2 257999999999988654
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.70 E-value=3.1e-18 Score=156.72 Aligned_cols=66 Identities=42% Similarity=1.046 Sum_probs=58.3
Q ss_pred cCCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 139 AEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 139 ~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
..+|.|+++ ..|+.|+++|+ +++||||||+||++||+.||+++..+| .++..+|+|||+.||..|+
T Consensus 153 ~~~~~W~~~---~~C~~C~~~F~-~~~rrhhCr~CG~v~C~~Cs~~~~~~~-~~~~~~~~RvC~~C~~~l~ 218 (220)
T 1dvp_A 153 DTAPNWADG---RVCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQCPLP-KYGIEKEVRVCDGCFAALQ 218 (220)
T ss_dssp SCCCCCCCC---SBCTTTCCBCC-SSSCCEECTTTCCEECSTTSCEEEEEG-GGTEEEEEEECHHHHHHHH
T ss_pred cccccCCCC---CccCCCCCccC-CcccccccCCcCCEEChHHhCCeeecC-cCCCCCCCEeCHHHHHHHh
Confidence 458899986 69999999999 678999999999999999999999888 3455689999999998874
No 10
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=4.6e-17 Score=160.76 Aligned_cols=70 Identities=34% Similarity=0.886 Sum_probs=0.0
Q ss_pred ccCCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 138 EAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 138 ~~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...+|.|+||.++..|+.|+.+|+ +++||||||+||++||..||+++..+| +...+++|||+.||..|..
T Consensus 363 ~~~~p~w~~~~~~~~c~~c~~~f~-~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~--~~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 363 GERPPTLVPVTHVMMCMNCGCDFS-LTLRRHHCHACGKIVCRNCSRNKYPLK--YLKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccCCCcCCCcccCCcCCCcCCCCC-CcchhhhcccCcCEeehhhCCCeeeCC--CCCCCcCEecHHHHHHHHh
Confidence 445899999999999999999999 678999999999999999999988776 4456899999999998853
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.61 E-value=5.9e-17 Score=135.86 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=42.5
Q ss_pred CCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 141 ~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
.+.|.||.++..|+.|+.+|+ +++||||||+||++||++||+++.. ++|||+.||..+.
T Consensus 10 ~~~~~Pd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~ifC~~Cs~~~~~---------~vRVC~~C~~~~~ 68 (120)
T 1y02_A 10 SSFPSPTGLEPSCKSCGAHFA-NTARKQTCLDCKKNFCMTCSSQVGN---------GPRLCLLCQRFRA 68 (120)
T ss_dssp ----------CCCTTTCCCCS-SGGGCEECTTTCCEECGGGEEC-------------CCEEHHHHHHHH
T ss_pred ccCCcCccccCcccCcCCccc-cccccccCCCCCCeeCHHHhCCCCC---------CceECHHHHHHHh
Confidence 346889999999999999999 6789999999999999999988742 4999999998764
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.90 E-value=2.9e-06 Score=82.92 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=40.5
Q ss_pred CCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCc
Q 019595 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKG 184 (338)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~ 184 (338)
..+.|.++...+.|+.|+..|..+++|+||||.||.++|..|+..
T Consensus 347 h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 347 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 456799999999999999999667899999999999999999864
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=96.51 E-value=0.0012 Score=55.82 Aligned_cols=55 Identities=18% Similarity=0.511 Sum_probs=45.2
Q ss_pred CCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccc
Q 019595 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (338)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (338)
.....|..|+++|+++..+.|-|..|.+-||.+|.... + .......-+|..|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~--~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---S--NNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---C--CSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc---C--CCCCccceechhhHHH
Confidence 35689999999999777889999999999999998643 1 1235678999999974
No 14
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=96.09 E-value=0.0016 Score=56.43 Aligned_cols=50 Identities=28% Similarity=0.738 Sum_probs=43.3
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (338)
...|..|.++|+++..+.+-|..|..-||.+|... ++ ....-+|..|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~-----~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP-----EEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS-----SSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---cC-----CCCcEeeHHHHHH
Confidence 58999999999999899999999999999999842 22 3578999999965
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.34 E-value=0.006 Score=62.47 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCc
Q 019595 142 PEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKG 184 (338)
Q Consensus 142 p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~ 184 (338)
..|.+....+.|+.|+..|..++++.|||+.||.++|..|...
T Consensus 521 F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 521 FQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp EEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred eeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 3467778889999999998447889999999999999999864
No 16
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.07 E-value=0.028 Score=43.11 Aligned_cols=51 Identities=25% Similarity=0.604 Sum_probs=42.7
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (338)
....|..|+++|++|+.|---|+.|-+-+|.+|-... ..+.-.|..|++..
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~---------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE---------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC---------STTCEEEHHHHSSC
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccccC---------CCCCEEEeeCchhh
Confidence 4579999999999999999999999999999996321 12688999998764
No 17
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=91.94 E-value=0.17 Score=39.47 Aligned_cols=31 Identities=29% Similarity=0.701 Sum_probs=25.1
Q ss_pred CCCCccCCCCcCCccccccccccccCCceEeCCC
Q 019595 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (338)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (338)
.....|..|++.-. |+. ..+|| ||.+||...
T Consensus 23 ~~~~rC~~C~kkvg-l~~-~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 23 KIMKHCFLCGKKTG-LAT-SFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCBCSSSCCBCS-SSS-CEECT-TCCEECTTT
T ss_pred ccCccchhhCCeec-ccC-CeEcC-CCCEecccC
Confidence 44579999999988 432 59998 999999875
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=91.32 E-value=0.15 Score=37.81 Aligned_cols=29 Identities=34% Similarity=0.787 Sum_probs=23.9
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCC
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (338)
....|..|++.-. |+ ...|| ||..||...
T Consensus 14 ~~~rC~~C~kkvg-l~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 14 RPNRCTVCRKRVG-LT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp SCCCCTTTCCCCC-TT--CEECS-SSCEECTTT
T ss_pred cCCcChhhCCccC-cc--CEEee-cCCEecccc
Confidence 3478999999988 44 58996 999999875
No 19
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=90.49 E-value=0.29 Score=37.25 Aligned_cols=30 Identities=37% Similarity=0.926 Sum_probs=24.3
Q ss_pred CCCCccCCCCcCCccccccccccccCCceEeCCC
Q 019595 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (338)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (338)
.....|..|++.-. |+ ..+|| ||..||...
T Consensus 23 ~~~~RC~~C~kkvg-L~--~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 23 STATRCLSCNKKVG-VT--GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCCCBCSSSCCBCT-TT--CEECT-TSCEECTTT
T ss_pred ccCccchhhcCccc-cc--ceEec-cCCEecccc
Confidence 34578999999988 44 58995 999999875
No 20
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=89.96 E-value=0.33 Score=36.94 Aligned_cols=29 Identities=34% Similarity=0.935 Sum_probs=24.1
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCC
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (338)
....|..|++.-. |+ ...|| ||..||...
T Consensus 24 ~~nRC~~CrKkvg-L~--gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 24 KKNRCFMCRKKVG-LT--GFDCR-CGNLFCGLH 52 (74)
T ss_dssp CTTBCSSSCCBCG-GG--CEECT-TSCEECSSS
T ss_pred cCCcChhhCCccc-cc--CeecC-CCCEechhc
Confidence 3478999999988 44 48999 999999865
No 21
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=87.44 E-value=0.43 Score=35.31 Aligned_cols=29 Identities=24% Similarity=0.741 Sum_probs=23.7
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCC
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (338)
....|..|++.-. |+ ...| .||..||...
T Consensus 14 ~~~rC~~C~kkvg-l~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVG-VM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCT-TS--CEEC-TTSCEECSSS
T ss_pred cCCcChhhCCccc-cc--CeEe-ecCCEecccC
Confidence 3478999999988 44 5899 5999999875
No 22
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=83.97 E-value=0.095 Score=38.21 Aligned_cols=30 Identities=27% Similarity=0.743 Sum_probs=24.9
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCC
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICT 182 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs 182 (338)
..|..|+++|.. ..+..|..|+.+||..|=
T Consensus 16 ~~C~~C~~~~~~--~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKD--QHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTT--SEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCC--CccEECCccCcCcccchh
Confidence 569999999962 235889999999999984
No 23
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=83.09 E-value=0.58 Score=31.83 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=32.0
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (338)
+...|.+|...|.. ...-.....||++||..|..... +....|-.|...+
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~---------~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWL---------GSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTT---------TTCCSCSSSCCCS
T ss_pred CCCcCccCCccccC-CCceEECCCCCCcccHHHHHHHH---------HcCCcCcCCCCEe
Confidence 34689999998873 11112223599999999986542 1234688876554
No 24
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=82.06 E-value=0.74 Score=33.74 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
+...|.+|...|.. . ....--.||++||..|...... ..+.|-.|...+..
T Consensus 14 ~~~~C~IC~~~~~~-~-~~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYAL-G-ESVRQLPCNHLFHDSCIVPWLE---------QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCT-T-SCEEECTTSCEEETTTTHHHHT---------TTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccC-C-CCEEEeCCCCeecHHHHHHHHH---------cCCcCcCcCCccCC
Confidence 34689999998862 1 1122235999999999876521 12579999887754
No 25
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.23 E-value=0.24 Score=36.38 Aligned_cols=52 Identities=23% Similarity=0.479 Sum_probs=36.2
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
+...|.+|...|.. ......-.||++||..|...... ....|-.|...+.+.
T Consensus 22 ~~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~---------~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES--RQLLRVLPCNHEFHAKCVDKWLK---------ANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB--TCEEEEETTTEEEETTHHHHHHH---------HCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC--CCeEEEECCCCHhHHHHHHHHHH---------cCCcCcCcCCcCCCC
Confidence 45689999998872 22344556999999999876521 124788888776543
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=80.59 E-value=0.27 Score=38.45 Aligned_cols=48 Identities=19% Similarity=0.499 Sum_probs=35.4
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|. ....|-.||++||..|....... ....|-.|...+..
T Consensus 23 ~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTE--------QRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHH--------TCSBCTTTCCBCCG
T ss_pred CCCccCCcccc----CccccCCCCChhhHHHHHHHHHH--------CcCCCCCCCCcCCH
Confidence 57999998776 35667899999999998654221 11689999887753
No 27
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.27 E-value=0.82 Score=34.08 Aligned_cols=32 Identities=34% Similarity=0.770 Sum_probs=24.5
Q ss_pred CCCCccCCCCcCCcccccc-ccccccCCceEeCCC
Q 019595 148 SSTTVCMQCTAPFTALTRG-RHHCRFCGGVFCRIC 181 (338)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rR-rHHCR~CG~vfC~~C 181 (338)
.....|..|++.-. |+.. -.+| .||.+||...
T Consensus 13 ~~~~rC~~C~kk~g-L~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 13 KSRRRCFQCQTKLE-LVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp SCTTBCSSSCCBCC-HHHHHHHCC-SSSCCCCTTT
T ss_pred ccCCcchhhCCeec-ccccCceEe-cCCCEehhcc
Confidence 45679999999988 5421 2789 7999999865
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=79.95 E-value=0.49 Score=34.71 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=32.7
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|.- ...-..||++||..|....... ...+.|-.|...+..
T Consensus 16 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHH-------SSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHh-------cCCCcCCCCCCcCCC
Confidence 579999887762 2333449999999998654321 124578888876543
No 29
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.96 E-value=0.39 Score=33.55 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=26.5
Q ss_pred CCccCCCCCCccCCCCcCCccc-cccccccccCCceE
Q 019595 142 PEWLPDSSTTVCMQCTAPFTAL-TRGRHHCRFCGGVF 177 (338)
Q Consensus 142 p~W~pd~~~~~C~~C~~~F~~l-~rRrHHCR~CG~vf 177 (338)
+.|+.. ....|..|+..|+.+ ..|+|-|..||.++
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 346544 678999999999942 23689999999864
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.79 E-value=0.72 Score=33.21 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=34.3
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...|.+|...|.-- .. -.||++||..|...... .......|-.|...+..
T Consensus 20 ~~~C~IC~~~~~~~----~~-~~CgH~fC~~Ci~~~~~------~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 20 EVICPICLDILQKP----VT-IDCGHNFCLKCITQIGE------TSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCBCTTTCSBCSSE----EE-CTTCCEEEHHHHHHHCS------SSCSCCCCSSSCCCCCC
T ss_pred CCEeccCCcccCCe----EE-cCCCChhhHHHHHHHHH------cCCCCCCCCCCCCcCCc
Confidence 46899999987731 11 27999999999865422 11345678888877653
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=78.74 E-value=1.3 Score=29.85 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=33.6
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (338)
+...|.+|...|.. ..+......||++||..|....... ...|-.|...+
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-SRVVAHVLPCGHLLHRTCYEEMLKE---------GYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT-TTSCEEECTTSCEEETTHHHHHHHH---------TCCCTTSCCSS
T ss_pred CCCcCcccChhhcC-CCcCeEecCCCCcccHHHHHHHHHc---------CCcCCCCCCcC
Confidence 44689999998852 1233455679999999998654221 15677776554
No 32
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.62 E-value=2 Score=29.73 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
.+...|.+|...|..- .--.||+.||..|... ....|-.|...+.
T Consensus 4 ~~~~~C~IC~~~~~~p-----~~l~CgH~fC~~Ci~~------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP-----KLLPCLHTLCSGCLEA------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC-----SCSTTSCCSBTTTCSS------------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe-----EEcCCCCcccHHHHcc------------CCCCCCcCCcEee
Confidence 3456799999887631 2246999999999754 1345777776654
No 33
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=78.39 E-value=1.7 Score=31.62 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=39.6
Q ss_pred CCCCccCCCCc-CCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccc
Q 019595 148 SSTTVCMQCTA-PFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (338)
Q Consensus 148 ~~~~~C~~C~~-~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (338)
.+...|.+|.+ +|. =. --|.|..|-.-||..|.-+. .+ ..++-.-||..|...
T Consensus 7 ~d~~~C~iC~KTKFA-DG-~Gh~C~yCk~r~CaRCGg~v-~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFA-DG-CGHNCSYCQTKFCARCGGRV-SL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCC-SS-CCEEBTTTCCEECTTSEEEE-ES----STTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceec-cC-CCccccccCCeeecccCCEe-ee----cCCeEEEEehhhhhc
Confidence 45679999998 565 22 36999999999999998654 22 335778899988653
No 34
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.05 E-value=1.1 Score=33.53 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=40.2
Q ss_pred CCCccCCCCCCccCCCCcCCccc---------ccc-ccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 141 PPEWLPDSSTTVCMQCTAPFTAL---------TRG-RHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 141 ~p~W~pd~~~~~C~~C~~~F~~l---------~rR-rHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
.+.|.-|.+...|.+|...|... ... ...-..||++|+..|...... ....|-.|...+.
T Consensus 6 ~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 6 SGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK---------QNNRCPLCQQDWV 75 (81)
T ss_dssp CCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT---------TCCBCTTTCCBCC
T ss_pred eEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH---------hCCCCCCcCCCcc
Confidence 45677777788999999999621 000 112225999999999876521 1248988887664
No 35
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.10 E-value=1.8 Score=34.53 Aligned_cols=44 Identities=23% Similarity=0.460 Sum_probs=30.9
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
-.|.+|...|.- ...-..||+.||..|...... ..|-.|...+.
T Consensus 23 ~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBCS
T ss_pred CCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcCc
Confidence 579999887752 222227999999999865411 56888887764
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=73.00 E-value=1.2 Score=32.49 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=35.8
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...|.+|...|.-- .. -.||++||..|........ .........|-.|...+..
T Consensus 12 ~~~C~IC~~~~~~p----~~-l~CgH~fC~~Ci~~~~~~~--~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEP----LS-LDCGHSLCRACITVSNKEA--VTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSC----CC-CSSSCCCCHHHHSCCCCCC--SSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCe----eE-CCCCCHHHHHHHHHHHHhc--ccCCCCCCcCCCCCCcCCH
Confidence 46899999987631 11 3699999999987653321 1111346789999887754
No 37
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=70.88 E-value=1.6 Score=32.66 Aligned_cols=26 Identities=19% Similarity=0.662 Sum_probs=18.6
Q ss_pred CCccCCCCcCCccccccccccccCCc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGG 175 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (338)
.-.|..|+..|...-.-.-+|+.||.
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCc
Confidence 35799999998843233467888887
No 38
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.42 E-value=0.92 Score=32.86 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=34.3
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
....|.+|...|.. .. ...--.||++||..|...... ..+.|-.|...+...
T Consensus 14 ~~~~C~IC~~~~~~-~~-~~~~~~C~H~f~~~Ci~~~~~---------~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKP-RD-ELGICPCKHAFHRKCLIKWLE---------VRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCS-SS-CEEEETTTEEEEHHHHHHHHH---------HCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCC-CC-cEEEcCCCCEecHHHHHHHHH---------cCCcCCCcCcccccc
Confidence 34689999998862 11 121126999999999865421 124799998777543
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.30 E-value=1 Score=32.98 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=34.6
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...|.+|...|.-- .. -.||++||..|......... .......|-.|...+..
T Consensus 19 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQP----LS-LDCGHSFCQACLTANHKKSM---LDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSC----BC-CSSSCCBCTTHHHHHHHHHH---HTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCc----ee-CCCCCHHHHHHHHHHHHHhh---cCCCCCcCCCCCCccCH
Confidence 36899999987631 11 27999999999865422100 01235789889887764
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=68.10 E-value=2.9 Score=29.68 Aligned_cols=52 Identities=13% Similarity=0.386 Sum_probs=35.0
Q ss_pred CCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
.....|.+|...|.. ......-.||++||..|....... ...|-.|...+..
T Consensus 12 ~~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLIT---------NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHHc---------CCCCcCcCccccC
Confidence 345689999998852 123444569999999998654221 2358888877653
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=65.60 E-value=1.1 Score=34.57 Aligned_cols=47 Identities=17% Similarity=0.409 Sum_probs=33.0
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|.- ......||+.||..|...... ....|-.|...+..
T Consensus 23 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLS---------YKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHT---------TCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC----cCEECCCCCHhhHHHHHHHHH---------CCCCCCCCCCcCCh
Confidence 579999987762 223347999999999865421 13578888877653
No 42
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=65.57 E-value=3.4 Score=29.13 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=34.1
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
+...|..|...|.. ......||++||..|...... ....|-.|...+..
T Consensus 4 ~~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN----YSMALPCLHAFCYVCITRWIR---------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHH---------HSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHh---------CcCcCcCCChhhHh
Confidence 34689999998762 123457999999999865421 12578889877753
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.07 E-value=1.3 Score=34.46 Aligned_cols=48 Identities=17% Similarity=0.445 Sum_probs=31.9
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
..|.+|...|.-- .--.||+.||..|....... ......|-.|...+.
T Consensus 22 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP-----VSTKCDHIFCKFCMLKLLNQ------KKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC-----CBCTTSCCCCSHHHHHHHHS------SSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe-----EECCCCCHHHHHHHHHHHHh------CCCCCCCcCCCCcCC
Confidence 4799998877521 11379999999998654221 122357888877664
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.69 E-value=1.1 Score=32.14 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=34.1
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
+...|.+|...|.. .--.||++||..|..... .....|-.|...+...
T Consensus 14 ~~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~---------~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD------LILPCAHSFCQKCIDKWS---------DRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS------EEETTTEEECHHHHHHSS---------CCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC------cccCCCCcccHHHHHHHH---------HCcCcCCCcCCcccCC
Confidence 34689999998773 335699999999986531 1356788888776543
No 45
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.40 E-value=1.6 Score=31.41 Aligned_cols=48 Identities=23% Similarity=0.548 Sum_probs=32.6
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
+...|.+|...|.-- .--.||++||..|...... ....|-.|...+..
T Consensus 14 ~~~~C~IC~~~~~~~-----~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHP-----VSLPCKHVFCYLCVKGASW---------LGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSE-----EEETTTEEEEHHHHHHCTT---------CSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCC-----EEccCCCHHHHHHHHHHHH---------CCCcCcCcCchhCH
Confidence 346899999877521 1126999999999864321 12678888877753
No 46
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.21 E-value=2.4 Score=31.42 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=35.6
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...|.+|...|.. ..+.-.--.||++||..|....... ......|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~-~~~~~~~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTE-EQLRPKLLHCGHTICRQCLEKLLAS------SINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCT-TSSCEEECSSSCEEEHHHHHHHHHH------CSSCBCCTTTCCCBCC
T ss_pred CCCCccCCccccc-cCCCeEECCCCChhhHHHHHHHHHc------CCCCcCCCCCCCcccc
Confidence 4689999998873 1211223379999999998654321 1235678889877653
No 47
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=63.41 E-value=7.4 Score=29.93 Aligned_cols=56 Identities=16% Similarity=0.375 Sum_probs=32.4
Q ss_pred CccCCCCcCCccccccccccccCCce-----EeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGV-----FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-----fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|..|+.+-. ...+.+||..|+.- ||..|-..-..++.- +...-.|..|.+.+++
T Consensus 3 ~~CP~C~~~l~-~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkAC---GA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 3 ITCPVCHHALE-RNGDTAHCETCAKDFSLQALCPDCRQPLQVLKAC---GAVDYFCQNGHGLISK 63 (81)
T ss_dssp CCCSSSCSCCE-ECSSEEECTTTCCEEEEEEECSSSCSCCCEEEET---TEEEECCTTTTCCCCT
T ss_pred CCCCCCCCccc-cCCCceECccccccCCCcccCcchhhHHHHHHhc---CCcCeeeccCCCEeec
Confidence 46888888776 34457778888864 566665433222211 1224556666665543
No 48
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.57 E-value=1.3 Score=32.49 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=34.9
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...|.+|...|..- .. -.||++||..|......... .......|-.|...+..
T Consensus 19 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEP----VS-ADCNHSFCRACITLNYESNR---NTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSC----EE-CTTSCCBCHHHHHHHHHHSB---CTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcc----ee-CCCCCHHHHHHHHHHHHhcc---CCCCCCCCCCCCCcCCH
Confidence 35899999887621 12 36999999999865432210 12236789999887753
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=62.28 E-value=2.8 Score=31.46 Aligned_cols=52 Identities=23% Similarity=0.593 Sum_probs=34.5
Q ss_pred CCCccCCCCcCCccccc-cccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 149 STTVCMQCTAPFTALTR-GRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~r-RrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
+...|.+|-.+|+ +.. +-.-| .||+.||..|..... ......|-.|...+..
T Consensus 10 ~~~~CpICle~~~-~~d~~~~p~-~CGH~fC~~Cl~~~~--------~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLE-IDDINFFPC-TCGYQICRFCWHRIR--------TDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCC-TTTTTCCSS-TTSCCCCHHHHHHHT--------TSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCc-ccccccccc-CCCCCcCHHHHHHHH--------hcCCCCCCCCCCccCC
Confidence 4468999999886 221 11223 599999999975431 0134679999887764
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=60.37 E-value=1.1 Score=34.33 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
+...|.+|...|.. . .....-.||++||..|...+.. ....|-.|...+.
T Consensus 39 ~~~~C~IC~~~~~~-~-~~~~~l~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVK-G-DVATELPCHHYFHKPCVSIWLQ---------KSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCT-T-CEEEEETTTEEEEHHHHHHHHT---------TTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcC-C-CcEEecCCCChHHHHHHHHHHH---------cCCcCcCcCccCC
Confidence 44689999998873 1 1233345999999999866521 1247888887664
No 51
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.89 E-value=1.1 Score=31.76 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=32.8
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...|.+|...|.-- . --.||++||..|...... .....|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~p----~-~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP----K-QTECGHRFCESCMAALLS--------SSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESSC----C-CCSSSCCCCHHHHHHHHT--------TSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcCe----e-ECCCCCHHHHHHHHHHHH--------hCcCCCCCCCcCCCh
Confidence 36799998876521 1 148999999999865421 234568888877653
No 52
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.66 E-value=2.1 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=23.1
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCce
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~ 185 (338)
...|.+|...|..- .--.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCcc-----EeCCCCCccCHHHHHHH
Confidence 46899999887631 11479999999998654
No 53
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.85 E-value=4.1 Score=29.29 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=33.9
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...|.+|...|.- ...-..||++||..|...... ..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLID----ATTITECLHTFCKSCIVRHFY---------YSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHH---------HCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHH---------cCCcCCCcCcccCc
Confidence 3689999887762 233358999999999865421 14578888877754
No 54
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=58.52 E-value=1.7 Score=34.93 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=33.3
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|.--. --.||+.||..|...... .....|-.|...+..
T Consensus 53 ~~C~IC~~~~~~p~-----~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPI-----TTVCQHNVCKDCLDRSFR--------AQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEE-----ECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcE-----EeeCCCcccHHHHHHHHh--------HCcCCCCCCCccCCC
Confidence 57999998776211 127999999999865421 234589999887754
No 55
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=58.31 E-value=2.7 Score=33.10 Aligned_cols=47 Identities=17% Similarity=0.443 Sum_probs=32.9
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
-.|.+|...|.--. --.||+.||..|...... .....|-.|...+..
T Consensus 16 ~~C~iC~~~~~~p~-----~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEPV-----TLPCNHTLCKPCFQSTVE--------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSCE-----ECTTSCEECHHHHCCCCC--------TTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCcee-----EcCCCCHHhHHHHHHHHh--------HCcCCCCCCCcccCc
Confidence 57999998776211 127999999999865421 123679999887753
No 56
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.23 E-value=3.3 Score=28.84 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCce
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~ 185 (338)
...|.+|...|.-- .. -.||++||..|....
T Consensus 20 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 20 EVICPICLDILQKP----VT-IDCGHNFCLKCITQI 50 (63)
T ss_dssp CCBCTTTCSBCSSC----EE-CTTSSEECHHHHHHH
T ss_pred CCCCCcCCchhCCe----EE-eCCCCcchHHHHHHH
Confidence 46899999877621 11 279999999998654
No 57
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=56.77 E-value=2.1 Score=31.17 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=33.2
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
.-.|..|...|.-- .--.||++||..|...... .....|-.|...+..
T Consensus 8 ~~~C~IC~~~~~~P-----v~~~CgH~fc~~Ci~~~~~--------~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 8 YFRCPISLELMKDP-----VIVSTGQTYERSSIQKWLD--------AGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSCTTTSCCCSSE-----EEETTTEEEEHHHHHHHHT--------TTCCBCTTTCCBCSS
T ss_pred cCCCCCccccccCC-----EEcCCCCeecHHHHHHHHH--------HCcCCCCCCcCCCCh
Confidence 46899999877621 1237999999999865421 125678888877753
No 58
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.30 E-value=8.1 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=20.9
Q ss_pred CCccCC--CCcCCccccccccccccCCceEeCC
Q 019595 150 TTVCMQ--CTAPFTALTRGRHHCRFCGGVFCRI 180 (338)
Q Consensus 150 ~~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~ 180 (338)
...|.. |++. . |+ ..+|+.|+..||..
T Consensus 12 ~~~Cs~~~Ck~~-~-ll--~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQR-E-MM--KLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCC-C-SS--CCBCSSSCCBCCHH
T ss_pred CCCCCccCCCCC-C-cc--ceECCCCCcccCcc
Confidence 467887 9987 4 33 57999999999963
No 59
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=55.63 E-value=2.9 Score=35.21 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=34.7
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|.- ...+..||++||..|...... .....|-.|...+..
T Consensus 55 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN----TMTTKECLHRFCADCIITALR--------SGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHH--------TTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC----cCEeCCCCChhHHHHHHHHHH--------hCcCCCCCCCCcCCC
Confidence 479999887762 334458999999999866522 124679999988754
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.25 E-value=4.6 Score=29.65 Aligned_cols=46 Identities=20% Similarity=0.451 Sum_probs=32.6
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
...|.+|...|.-- .--.||++||..|...... ....|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNP-----VVTKCRHYFCESCALEHFR---------ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSE-----EECTTSCEEEHHHHHHHHH---------HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCe-----eEccCCCHhHHHHHHHHHH---------CCCcCCCcCcccc
Confidence 45899998877621 1257999999999865421 2457888887764
No 61
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=53.15 E-value=3.4 Score=32.22 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=33.4
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|.- ....-.||+.||..|...... ....|-.|...+..
T Consensus 16 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLE---------TSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHT---------SCSBCTTTCCBSCS
T ss_pred CCCccCChHHhC----cCEeCCCCChhhHHHHHHHHH---------hCCcCcCCCccccc
Confidence 579999887752 233348999999999865421 12679999887764
No 62
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=53.04 E-value=7.6 Score=29.51 Aligned_cols=33 Identities=27% Similarity=0.626 Sum_probs=23.3
Q ss_pred CccCCCCcCCccc-cccccccccCCceEeCCCCC
Q 019595 151 TVCMQCTAPFTAL-TRGRHHCRFCGGVFCRICTK 183 (338)
Q Consensus 151 ~~C~~C~~~F~~l-~rRrHHCR~CG~vfC~~Cs~ 183 (338)
..|..|+..|..- ..++-.|..||..||..|-.
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred eECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3477787765311 12457899999999999975
No 63
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=52.95 E-value=2.5 Score=33.12 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=35.7
Q ss_pred CccCCCCcCCcccc----------c---cccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALT----------R---GRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~----------r---RrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|..-. . ..-..-.||++||..|........ .......|-.|...+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~----~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG----NKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT----CCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc----cCCCCCcCCCCCCccCC
Confidence 58999999885210 0 011145699999999987653221 11345789999877653
No 64
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.47 E-value=3.4 Score=28.93 Aligned_cols=52 Identities=21% Similarity=0.573 Sum_probs=34.1
Q ss_pred CCCccCCCCcCCcccc--ccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595 149 STTVCMQCTAPFTALT--RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~--rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (338)
+...|.+|...|..-. .+.-.-..||++||..|...... ....|-.|...+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH---------HCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH---------cCCCCCCCCCccC
Confidence 4468999999876211 12224568999999999865421 1346887876654
No 65
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=51.31 E-value=5.5 Score=28.06 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=15.0
Q ss_pred ccCCCCcCCccc-----------cccccccccCCceE
Q 019595 152 VCMQCTAPFTAL-----------TRGRHHCRFCGGVF 177 (338)
Q Consensus 152 ~C~~C~~~F~~l-----------~rRrHHCR~CG~vf 177 (338)
.|..|++.|... ..|.+.|..||+.|
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F 42 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEE
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCc
Confidence 577777777531 12345566666655
No 66
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=51.07 E-value=2.7 Score=34.47 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=31.5
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|.- -.--.||+.||..|..... .....|..|...+..
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~---------~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWM---------KRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHT---------TTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHH---------HcCCcCCCCCCcCCC
Confidence 369999987752 1223699999999976431 123469999877653
No 67
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=50.56 E-value=8.1 Score=30.80 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=17.9
Q ss_pred CccCCCCcCCccccccccccccCCce
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGV 176 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v 176 (338)
..|..|+.+.. +....+||..|..-
T Consensus 33 ~~CP~Cq~eL~-~~g~~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCPQCQHVLD-QDNGHARCRSCGEF 57 (101)
T ss_dssp CBCSSSCSBEE-EETTEEEETTTCCE
T ss_pred ccCccCCCcce-ecCCEEECccccch
Confidence 68999999877 34456667777653
No 68
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=50.28 E-value=3.3 Score=29.30 Aligned_cols=53 Identities=21% Similarity=0.555 Sum_probs=35.6
Q ss_pred CCCccCCCCcCCcccc--ccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 149 STTVCMQCTAPFTALT--RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~--rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
+...|.+|...|..-. .+.-....||++||..|...... ....|-.|...+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH---------HCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH---------cCCCCCCCCCccCh
Confidence 4468999999876210 12225568999999999875421 12478888877753
No 69
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=48.95 E-value=10 Score=28.53 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=9.6
Q ss_pred CCccCCCCcCCcc
Q 019595 150 TTVCMQCTAPFTA 162 (338)
Q Consensus 150 ~~~C~~C~~~F~~ 162 (338)
...|..|++.|..
T Consensus 28 ~h~C~~Cgk~F~~ 40 (85)
T 2lv2_A 28 CHLCPVCGESFAS 40 (85)
T ss_dssp TEECTTSCCEESS
T ss_pred CEECCCCCCCcCc
Confidence 3578888888863
No 70
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=48.79 E-value=3.1 Score=28.71 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=34.6
Q ss_pred CCccCCCCcCCccc--cccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTAL--TRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l--~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
...|.+|...|..- ..+.-....||++||..|...... ....|-.|...+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH---------HCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH---------cCCCCCCCCccCCc
Confidence 45799999877621 112224568999999999865421 13478888877654
No 71
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=47.61 E-value=4.3 Score=30.44 Aligned_cols=48 Identities=21% Similarity=0.563 Sum_probs=32.1
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (338)
.-.|.+|...|.- -..-..||+.||..|......- .....|-.|...+
T Consensus 13 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHH-------CTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHh-------cCCCcCcCCCCcC
Confidence 4689999987752 2233349999999998654211 1236788888765
No 72
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.45 E-value=14 Score=25.67 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.5
Q ss_pred CCCccCCCCcCCcc
Q 019595 149 STTVCMQCTAPFTA 162 (338)
Q Consensus 149 ~~~~C~~C~~~F~~ 162 (338)
..-.|..|++.|..
T Consensus 16 ~~~~C~~C~k~f~~ 29 (74)
T 2lce_A 16 KPYKCDRCQASFRY 29 (74)
T ss_dssp CSBCCTTSSCCBSC
T ss_pred CCeECCCCCceeCC
Confidence 34579999998863
No 73
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=47.15 E-value=10 Score=24.73 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=8.6
Q ss_pred CccCCCCcCCcc
Q 019595 151 TVCMQCTAPFTA 162 (338)
Q Consensus 151 ~~C~~C~~~F~~ 162 (338)
-.|..|++.|..
T Consensus 5 ~~C~~C~~~f~~ 16 (57)
T 3uk3_C 5 RECSYCGKFFRS 16 (57)
T ss_dssp CBCTTTCCBCSC
T ss_pred ccCCCCcchhCC
Confidence 468888888863
No 74
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.90 E-value=5.6 Score=30.22 Aligned_cols=55 Identities=18% Similarity=0.458 Sum_probs=32.4
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccc--cccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA--CYDR 207 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~--C~~~ 207 (338)
...|.+|-..|.. - .-..-..||+.||..|.......-... +......|-. |...
T Consensus 5 ~~~C~IC~~~~~~-~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~-g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPV-E-QMTTIAQCQCIFCTLCLKQYVELLIKE-GLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBG-G-GEEEETTTTEEEEHHHHHHHHHHHHHH-CSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccc-c-cceEcCCCCCcccHHHHHHHHHHHhhc-CCcccccCccccCCCC
Confidence 4579999887752 1 112223699999999987553321111 1112356877 8776
No 75
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=46.60 E-value=3.2 Score=40.72 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=34.5
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
..|.+|...|. .-..-.||++||..|...... ...+.|-.|...+...
T Consensus 333 ~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~--------~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQE--------SEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHH--------HTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHh--------cCCCCCCCCCCccCCc
Confidence 68999987664 234578999999999854311 1356799998877654
No 76
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.53 E-value=8.1 Score=26.82 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=17.5
Q ss_pred CCccCCCCcC-CccccccccccccCCceE
Q 019595 150 TTVCMQCTAP-FTALTRGRHHCRFCGGVF 177 (338)
Q Consensus 150 ~~~C~~C~~~-F~~l~rRrHHCR~CG~vf 177 (338)
...|..|+.. |-.-...|++|..||.++
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 3578888763 321223478888888764
No 77
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=45.06 E-value=6.2 Score=32.33 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=19.6
Q ss_pred CCccCCCCcC-CccccccccccccCCceEeCC
Q 019595 150 TTVCMQCTAP-FTALTRGRHHCRFCGGVFCRI 180 (338)
Q Consensus 150 ~~~C~~C~~~-F~~l~rRrHHCR~CG~vfC~~ 180 (338)
...|..|++. +.......+||+.||..|-..
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 3678899872 211112358899999887654
No 78
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=42.95 E-value=13 Score=24.18 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=7.5
Q ss_pred ccCCCCcCCc
Q 019595 152 VCMQCTAPFT 161 (338)
Q Consensus 152 ~C~~C~~~F~ 161 (338)
.|..|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 5777888775
No 79
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=42.63 E-value=16 Score=27.63 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=21.9
Q ss_pred CCccCC--CCcCCccccccccccccCCceEeCCCC
Q 019595 150 TTVCMQ--CTAPFTALTRGRHHCRFCGGVFCRICT 182 (338)
Q Consensus 150 ~~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~Cs 182 (338)
...|.. |++. . |+ ...|+.|+.+||...-
T Consensus 14 g~~Cs~~~C~~~-d-fl--pf~C~~C~~~FC~~HR 44 (75)
T 1wys_A 14 GQHCQVQHCRQR-D-FL--PFVCDGCSGIFCLEHR 44 (75)
T ss_dssp CCCCSCTTTCCC-S-CC--CEECTTTCCEECSTTC
T ss_pred CCCcCcccCCCc-c-ce--eeECcccCcCcCcccC
Confidence 357886 9886 4 33 5889999999998653
No 80
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=42.01 E-value=2.1 Score=33.88 Aligned_cols=54 Identities=22% Similarity=0.576 Sum_probs=35.5
Q ss_pred CCCCccCCCCcCCcccc--ccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 148 SSTTVCMQCTAPFTALT--RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 148 ~~~~~C~~C~~~F~~l~--rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
.+...|.+|...|.... .+.-..-.||++||..|..... +..+.|-.|...+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~---------~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---------KNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH---------HHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH---------HcCCCCCCCCCcCCh
Confidence 34567888888776321 1122455799999999986542 124578888877754
No 81
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=42.00 E-value=15 Score=26.83 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=18.2
Q ss_pred CCccCCCCcCCccccccccccccCCc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGG 175 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (338)
.-.|..|+..|.+-..-.-.|+.||.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 36899999999832223467777775
No 82
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=41.75 E-value=6 Score=27.22 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=7.7
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 15 ~~C~~C~k~F~ 25 (62)
T 1vd4_A 15 FKCPVCSSTFT 25 (62)
T ss_dssp EECSSSCCEEE
T ss_pred ccCCCCCchhc
Confidence 46777777775
No 83
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=41.51 E-value=14 Score=24.41 Aligned_cols=10 Identities=50% Similarity=1.089 Sum_probs=7.3
Q ss_pred ccCCCCcCCc
Q 019595 152 VCMQCTAPFT 161 (338)
Q Consensus 152 ~C~~C~~~F~ 161 (338)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 5777777775
No 84
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=39.55 E-value=6.7 Score=31.90 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=5.2
Q ss_pred CCccCCCCCCccCCCCcCCccccc---------ccccc----ccCCceEeCCCCCceeecCccCCCCcceeecccccccc
Q 019595 142 PEWLPDSSTTVCMQCTAPFTALTR---------GRHHC----RFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (338)
Q Consensus 142 p~W~pd~~~~~C~~C~~~F~~l~r---------RrHHC----R~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (338)
..|.-|.....|.+|...|...-. ....| -.||++|+..|...... ...+|..|....
T Consensus 40 a~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~---------~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 40 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---------TRQVCPLDNREW 110 (117)
T ss_dssp EEEEECCCC-----------------------------------------------------------------------
T ss_pred EEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH---------cCCcCCCCCCee
Confidence 345556667899999999862100 01112 26999999999876522 145788886553
No 85
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.74 E-value=26 Score=24.92 Aligned_cols=36 Identities=25% Similarity=0.594 Sum_probs=25.4
Q ss_pred CCCccCCCCcCCccc-ccccccccc--CCceEeCCCCCc
Q 019595 149 STTVCMQCTAPFTAL-TRGRHHCRF--CGGVFCRICTKG 184 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l-~rRrHHCR~--CG~vfC~~Cs~~ 184 (338)
....|..|+...... .--.-.|+. |+..||..|...
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 356899999866521 112457888 999999999754
No 86
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=37.55 E-value=22 Score=31.53 Aligned_cols=48 Identities=6% Similarity=-0.161 Sum_probs=31.5
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
.-.|.+|...|. .-..-.||+.||..|......- . ...|..|...+..
T Consensus 208 ~~~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~~~------~--~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 208 YLCGKISFELMR-----EPCITPSGITYDRKDIEEHLQR------V--GHFNPVTRSPLTQ 255 (281)
T ss_dssp TTBCTTTCSBCS-----SEEECSSCCEEETTHHHHHHHH------T--CSSCTTTCCCCCG
T ss_pred ccCCcCcCCHhc-----CCeECCCCCEECHHHHHHHHHH------C--CCCCcCCCCCCch
Confidence 357888888665 2334569999999997654211 0 1238888877754
No 87
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.41 E-value=37 Score=23.60 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=10.2
Q ss_pred CCCccCCCCcCCcc
Q 019595 149 STTVCMQCTAPFTA 162 (338)
Q Consensus 149 ~~~~C~~C~~~F~~ 162 (338)
..-.|..|++.|..
T Consensus 17 ~~~~C~~C~~~f~~ 30 (77)
T 2cot_A 17 RRYKCDECGKSFSH 30 (77)
T ss_dssp CSSBCSSSCCBCSC
T ss_pred CCEECCCCCcccCC
Confidence 34578889988863
No 88
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=37.40 E-value=11 Score=26.94 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=17.7
Q ss_pred CCccCCCCcCCccccccccccccCCc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGG 175 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (338)
...|+.|..... -|-.+||.||.
T Consensus 19 k~ICrkC~ARnp---~~A~~CRKCg~ 41 (56)
T 2ayj_A 19 KKVCRKCGALNP---IRATKCRRCHS 41 (56)
T ss_dssp CEEETTTCCEEC---TTCSSCTTTCC
T ss_pred hhhhccccCcCC---cccccccCCCC
Confidence 357889988777 26899998883
No 89
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.85 E-value=18 Score=34.15 Aligned_cols=63 Identities=21% Similarity=0.499 Sum_probs=38.7
Q ss_pred CCCccCCCCcCC--ccc-------cccccccccCCc------eEeCCCCCceeecCccCC--------CCcceeeccccc
Q 019595 149 STTVCMQCTAPF--TAL-------TRGRHHCRFCGG------VFCRICTKGRCLLPVRFR--------ERNPQRVCDACY 205 (338)
Q Consensus 149 ~~~~C~~C~~~F--~~l-------~rRrHHCR~CG~------vfC~~Cs~~~~~lP~~~~--------~~~p~RVC~~C~ 205 (338)
....|..|+..= +.+ ..|..||-.||. +-|..|-+.+..--.... ....+-+|+.|.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~ 260 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQ 260 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTT
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEccccc
Confidence 357999999843 211 125789999985 478888765421100111 223466999999
Q ss_pred cccccc
Q 019595 206 DRLDPL 211 (338)
Q Consensus 206 ~~l~~~ 211 (338)
..++..
T Consensus 261 ~YlK~~ 266 (309)
T 2fiy_A 261 GYLKQF 266 (309)
T ss_dssp EEEEEE
T ss_pred chHhhh
Confidence 877543
No 90
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=36.55 E-value=18 Score=34.54 Aligned_cols=43 Identities=21% Similarity=0.526 Sum_probs=31.5
Q ss_pred CccCCCCcCCccccccccccccCCce-EeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
..|.+|...|.-. ---.||+. ||..|.... +.|-.|...+...
T Consensus 296 ~~C~IC~~~~~~~-----v~lpCgH~~fC~~C~~~~-------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 296 RTCKVCMDKEVSV-----VFIPCGHLVVCQECAPSL-------------RKCPICRGIIKGT 339 (345)
T ss_dssp CBCTTTSSSBCCE-----EEETTCCEEECTTTGGGC-------------SBCTTTCCBCCEE
T ss_pred CCCCccCCcCCce-----EEcCCCChhHhHHHHhcC-------------CcCCCCCCCccCe
Confidence 5799998877522 22379999 999997531 6799998877643
No 91
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.45 E-value=15 Score=25.31 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=7.0
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 35666777665
No 92
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.22 E-value=15 Score=29.58 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=5.3
Q ss_pred ccCCCCcCC
Q 019595 152 VCMQCTAPF 160 (338)
Q Consensus 152 ~C~~C~~~F 160 (338)
.|..|+-.|
T Consensus 69 ~C~~CG~~F 77 (105)
T 2gmg_A 69 QCRKCGFVF 77 (105)
T ss_dssp BBTTTCCBC
T ss_pred ChhhCcCee
Confidence 566666555
No 93
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.59 E-value=15 Score=25.39 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=7.6
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 15 ~~C~~C~k~f~ 25 (72)
T 1x6e_A 15 YGCVECGKAFS 25 (72)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCccC
Confidence 46777777775
No 94
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=34.51 E-value=10 Score=31.69 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=32.8
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|.-- .--.||+.||..|...... .....|-.|...+..
T Consensus 79 ~~C~IC~~~~~~p-----v~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQP-----VTTECFHNVCKDCLQRSFK--------AQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCC-----EEcCCCCchhHHHHHHHHH--------hCCCcCCCCCccCCC
Confidence 5799998877621 1148999999999865421 123579999877754
No 95
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=34.30 E-value=8.1 Score=28.10 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=30.3
Q ss_pred CccCCCCcCCccccccccccccCCce-EeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
..|..|...|.-. ---.||+. ||..|.... +.|-.|...+...
T Consensus 25 ~~C~iC~~~~~~~-----~~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 25 KLCKICMDRNIAI-----VFVPCGHLVTCKQCAEAV-------------DKCPMCYTVITFK 68 (74)
T ss_dssp TBCTTTSSSBCCE-----EEETTCCBCCCHHHHTTC-------------SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCE-----EEcCCCChhHHHHhhhcC-------------ccCCCcCcCccCc
Confidence 5799998866522 22479999 999996532 6788887776543
No 96
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.26 E-value=7 Score=27.32 Aligned_cols=51 Identities=18% Similarity=0.442 Sum_probs=31.6
Q ss_pred CccCCCCc-CCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTA-PFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~-~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|.. .|.-- .++..=..||++||..|...... +....|-.|...+..
T Consensus 4 ~~C~IC~~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDLLFV--------RGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCS-SCCEEECTTCCCEEHHHHHHHHH--------TTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCC-ccCeecCCCCCHhHHHHHHHHHH--------cCCCcCCCCCCcccc
Confidence 57999987 55411 11112247999999999865421 123468888877754
No 97
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=33.90 E-value=15 Score=24.13 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=7.9
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 46778888775
No 98
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=33.72 E-value=18 Score=24.76 Aligned_cols=30 Identities=30% Similarity=0.638 Sum_probs=18.1
Q ss_pred CCCccCCCCcCCccccccccccccCCceEeCCCC
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICT 182 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs 182 (338)
+...|..|+..-+++.||-- =|..+|+.|.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp----~G~~LCNaCG 32 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDR----TGHYLCNACG 32 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCT----TCCCBCSHHH
T ss_pred CCCCCCCcCCCCCCcCccCC----CCCccchHHH
Confidence 34678888888877765422 1445555554
No 99
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=33.34 E-value=23 Score=33.56 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=19.1
Q ss_pred cCCCCccCCCC-CCccCCCCcC-----CccccccccccccCCceE
Q 019595 139 AEPPEWLPDSS-TTVCMQCTAP-----FTALTRGRHHCRFCGGVF 177 (338)
Q Consensus 139 ~~~p~W~pd~~-~~~C~~C~~~-----F~~l~rRrHHCR~CG~vf 177 (338)
.....|.||-. ...|..|+.. +. ..+.---|..||.|+
T Consensus 9 ~~~~~~~~~~~~~~~Cp~Cg~~~~~iv~D-~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 9 KRAGRRGPNLNIVLTCPECKVYPPKIVER-FSEGDVVCALCGLVL 52 (345)
T ss_dssp --------CCCCCCCCSTTCCSCCCCCCC-SSSCSCCCSSSCCCC
T ss_pred hcccccCccccCCCcCcCCCCCCCceEEE-CCCCCEecCCCCeEc
Confidence 33344777654 5689999874 22 223455677777775
No 100
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.18 E-value=14 Score=27.95 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=8.5
Q ss_pred CccCCCCcCC
Q 019595 151 TVCMQCTAPF 160 (338)
Q Consensus 151 ~~C~~C~~~F 160 (338)
-.|..|++.|
T Consensus 35 ~~C~~C~k~F 44 (96)
T 2ctd_A 35 VSCPTCQAVG 44 (96)
T ss_dssp EECTTTCSCE
T ss_pred cCCCCCCCCc
Confidence 4799999988
No 101
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=32.77 E-value=9.9 Score=35.40 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=34.0
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccc--ccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA--CYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~--C~~~l~~ 210 (338)
.-.|.+|...|.- ---...||++||..|...... ......|-. |...+..
T Consensus 181 el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~~~-------~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEA----PLISRKCNHVFDRDGIQNYLQ-------GYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHHST-------TCSCEECSGGGCSCEECG
T ss_pred eeECcCccCcccC----CeeeCCCCCcccHHHHHHHHH-------hCCCCCCCcccccCcCch
Confidence 3589999998762 122357999999999754321 124478998 9887753
No 102
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.40 E-value=47 Score=24.71 Aligned_cols=35 Identities=29% Similarity=0.720 Sum_probs=23.8
Q ss_pred CCccCC--CCcCCcc-ccccccccc-----cCCceEeCCCCCc
Q 019595 150 TTVCMQ--CTAPFTA-LTRGRHHCR-----FCGGVFCRICTKG 184 (338)
Q Consensus 150 ~~~C~~--C~~~F~~-l~rRrHHCR-----~CG~vfC~~Cs~~ 184 (338)
...|.. |+..... -..++-.|. .||..||..|...
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 556664 7765431 123567897 8999999999753
No 103
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.37 E-value=15 Score=25.70 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=6.8
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (78)
T 2d9h_A 8 LQCEICGFTCR 18 (78)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCeeC
Confidence 35666666664
No 104
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.90 E-value=14 Score=27.65 Aligned_cols=11 Identities=27% Similarity=0.636 Sum_probs=9.0
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 25 ~~C~~C~k~f~ 35 (98)
T 2gqj_A 25 AVCPTCNVVTR 35 (98)
T ss_dssp CCCTTTCCCCS
T ss_pred cCCCCCCCChh
Confidence 57888888887
No 105
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.89 E-value=11 Score=27.38 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=30.2
Q ss_pred CccCCCCcCCccccccccccccCCce-EeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
..|.+|...|.- .---.||+. ||..|.. ..+.|-.|...+...
T Consensus 26 ~~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~-------------~~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNIA-----IVFVPCGHLVTCKQCAE-------------AVDKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCCC-----BCCSSSCCCCBCHHHHH-------------HCSBCTTTCCBCCCC
T ss_pred CCCCcCCCCCCC-----EEEecCCCHHHHHHHhh-------------CCCCCccCCceecCc
Confidence 479999887652 222579999 9999973 126788888777543
No 106
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=31.33 E-value=15 Score=30.83 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=11.6
Q ss_pred CccCCCCcCCccccccccccccCCc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGG 175 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (338)
-.|..|++.|..+ .....|..||.
T Consensus 133 y~C~~Cg~~~~~~-~~~~~Cp~CG~ 156 (165)
T 2lcq_A 133 YVCIGCGRKFSTL-PPGGVCPDCGS 156 (165)
T ss_dssp EEESSSCCEESSC-CGGGBCTTTCC
T ss_pred EECCCCCCcccCC-CCCCcCCCCCC
Confidence 4566666666522 22234555543
No 107
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=31.33 E-value=12 Score=30.94 Aligned_cols=46 Identities=20% Similarity=0.515 Sum_probs=31.7
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (338)
.-.|.+|...|.-- .. -.||+.||..|...... .....|-.|...+
T Consensus 31 ~~~C~IC~~~~~~p----v~-~~CgH~FC~~Ci~~~~~--------~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLRRP----FQ-AQCGHRYCSFCLASILS--------SGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCSSE----EE-CTTSCEEEHHHHHHHGG--------GSCEECHHHHHTT
T ss_pred CcCCCCCChhhcCc----EE-CCCCCccCHHHHHHHHh--------cCCCCCCCCCCcc
Confidence 35799999877521 22 38999999999865421 2235798887754
No 108
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.26 E-value=19 Score=27.78 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=21.1
Q ss_pred CCccCC--CCcCCccccccccccccCCceEeCCC
Q 019595 150 TTVCMQ--CTAPFTALTRGRHHCRFCGGVFCRIC 181 (338)
Q Consensus 150 ~~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (338)
...|.. |++. . |+ ..+|+.||..||...
T Consensus 25 ~~~C~~~~Ck~~-~-~l--~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 25 SYSCSFKGCTDV-E-LV--AVICPYCEKNFCLRH 54 (86)
T ss_dssp CEECCSTTCCCE-E-SS--CEECTTTCCEECGGG
T ss_pred CCCCCCcCCCCC-C-cc--ceECCCCCccccccc
Confidence 367887 9886 3 32 479999999999754
No 109
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.19 E-value=20 Score=25.12 Aligned_cols=23 Identities=39% Similarity=0.842 Sum_probs=15.2
Q ss_pred CccCCCCcCCccccccccccccCCce
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGV 176 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v 176 (338)
..|+.|+..-. .+..+||.||..
T Consensus 15 ~iCpkC~a~~~---~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNP---WGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEEC---TTCSSCSSSSSC
T ss_pred ccCCCCCCcCC---CCceecCCCCCc
Confidence 56778877622 356778877764
No 110
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=30.93 E-value=21 Score=24.04 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=4.5
Q ss_pred CccCCCCc
Q 019595 151 TVCMQCTA 158 (338)
Q Consensus 151 ~~C~~C~~ 158 (338)
..|..|+.
T Consensus 6 ~~CP~C~~ 13 (50)
T 1pft_A 6 KVCPACES 13 (50)
T ss_dssp CSCTTTSC
T ss_pred EeCcCCCC
Confidence 34666655
No 111
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=30.50 E-value=8.3 Score=30.86 Aligned_cols=53 Identities=21% Similarity=0.529 Sum_probs=38.1
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccccccch
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVL 215 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~~~~l 215 (338)
..|..|..+|. .. .---.|.++||-.|..... .+....|..|-+.+...+...
T Consensus 2 hfC~~C~~Pi~-iy---gRmIPCkHvFCydCa~~~~--------~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 2 HFCDKCGLPIK-VY---GRMIPCKHVFCYDCAILHE--------KKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp CBCTTTCSBCS-EE---EEEETTCCEEEHHHHHHHH--------HTTCCBCTTTCCBCSEEEEEE
T ss_pred eecCccCCCeE-EE---eeeccccccHHHHHHHHHH--------hccCCCCcCcCCeeeeeEEec
Confidence 46999999998 43 3355788899999974321 134678999998887766543
No 112
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.78 E-value=20 Score=25.71 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=30.9
Q ss_pred CCCccCCCCcCCccccccccccccCCce-EeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (338)
+...|.+|...+.. .---.||++ ||..|... .+.|-.|...+...
T Consensus 14 ~~~~C~IC~~~~~~-----~v~~pCgH~~~C~~C~~~-------------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN-----WVLLPCRHTCLCDGCVKY-------------FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCC-----CEETTTTBCCSCTTHHHH-------------CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCC-----EEEECCCChhhhHHHHhc-------------CCCCCCCCcchhce
Confidence 34689999775542 233579999 99999751 35688887776543
No 113
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=29.02 E-value=17 Score=27.88 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=15.2
Q ss_pred CccCCCCcC--CccccccccccccCCceEeCC
Q 019595 151 TVCMQCTAP--FTALTRGRHHCRFCGGVFCRI 180 (338)
Q Consensus 151 ~~C~~C~~~--F~~l~rRrHHCR~CG~vfC~~ 180 (338)
..|..|+.. |. ......+|..||..|-..
T Consensus 28 y~Cp~CG~~~v~r-~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 28 HACPNCGEDRVDR-QGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp EECSSSCCEEEEE-EETTEEEETTTCCEEECC
T ss_pred CcCCCCCCcceec-cCCCeEECCCCCCEecCC
Confidence 457777662 11 112346666666666543
No 114
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.95 E-value=22 Score=27.36 Aligned_cols=27 Identities=22% Similarity=0.604 Sum_probs=18.0
Q ss_pred CccCCCCcCCcccccc----ccccccCCceEeCC
Q 019595 151 TVCMQCTAPFTALTRG----RHHCRFCGGVFCRI 180 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~~ 180 (338)
..|..|++. . + +| --||+.||..|-..
T Consensus 36 y~CpfCGk~-~-v-kR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 36 HTCPVCGRK-A-V-KRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp BCCSSSCSS-C-E-EEEETTEEEETTTCCEEECC
T ss_pred cCCCCCCCc-e-e-EecCcCeEEcCCCCCEEeCC
Confidence 578888875 3 3 33 24788888877543
No 115
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=27.31 E-value=27 Score=27.35 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=15.8
Q ss_pred CccCCCCcCCcccccc----ccccccCCceEeC
Q 019595 151 TVCMQCTAPFTALTRG----RHHCRFCGGVFCR 179 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~ 179 (338)
..|..|++. . + +| --||+.||..|-.
T Consensus 37 y~CpfCgk~-~-v-kR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 37 YFCEFCGKF-A-V-KRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp BCCTTTCSS-C-B-EEEETTEEECSSSCCEEEC
T ss_pred ccCcccCCC-e-e-EecCcceEEcCCCCCEEeC
Confidence 467777764 3 3 22 2477777777644
No 116
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=26.09 E-value=16 Score=23.40 Aligned_cols=10 Identities=50% Similarity=1.354 Sum_probs=7.6
Q ss_pred ccccccCCce
Q 019595 167 RHHCRFCGGV 176 (338)
Q Consensus 167 rHHCR~CG~v 176 (338)
+.|||.|-+-
T Consensus 9 kqhcrfckkk 18 (37)
T 2elu_A 9 KQHCRFCKKK 18 (37)
T ss_dssp CCEETTTTEE
T ss_pred HHHHHHHHHH
Confidence 6899988653
No 117
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=25.99 E-value=36 Score=25.51 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=16.6
Q ss_pred CccCCCCcCCcccccc----ccccccCCceEeC
Q 019595 151 TVCMQCTAPFTALTRG----RHHCRFCGGVFCR 179 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~ 179 (338)
..|..|++. . + +| --||+.||..|-.
T Consensus 27 y~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 27 YDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp BCCSSCCSS-C-B-SBCSSSCBCCSSSCCCCCC
T ss_pred ccCCCCCCc-e-e-EecCCCeEECCCCCCEEeC
Confidence 578888864 3 3 23 2578888877643
No 118
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.84 E-value=25 Score=18.83 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=7.3
Q ss_pred ccccccCCceE
Q 019595 167 RHHCRFCGGVF 177 (338)
Q Consensus 167 rHHCR~CG~vf 177 (338)
.+.|..||+.|
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvh_A 3 PFSCSLCPQRS 13 (27)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCcChhh
Confidence 45677777765
No 119
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=25.55 E-value=25 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=18.4
Q ss_pred CCCccCCCCcCCcccccc----ccccccCCceEeCC
Q 019595 149 STTVCMQCTAPFTALTRG----RHHCRFCGGVFCRI 180 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~~ 180 (338)
....|..|++. . + +| --+|+.||..|=..
T Consensus 26 ~ky~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 26 KKYKCPVCGFP-K-L-KRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred cCccCCCCCCc-e-e-EEEEeEEEECCCCCcEEECC
Confidence 34678888862 2 2 23 36788888877543
No 120
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=25.53 E-value=17 Score=28.60 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=32.2
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
-.|.+|...|.-- .. -.||++||..|....... ....|-.|...+..
T Consensus 19 ~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALREA----VQ-TPCGHRFCKACIIKSIRD--------AGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSSE----EE-CTTSCEEEHHHHHHHHHH--------HCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcCe----EE-CCcCChhhHHHHHHHHhh--------CCCCCCCCCCCcCH
Confidence 5899999877621 22 369999999998654211 12278889877754
No 121
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.51 E-value=26 Score=18.69 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=4.5
Q ss_pred cccccCCceE
Q 019595 168 HHCRFCGGVF 177 (338)
Q Consensus 168 HHCR~CG~vf 177 (338)
+.|..||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 3444444443
No 122
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.38 E-value=26 Score=28.02 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=5.5
Q ss_pred ccCCCCcCCc
Q 019595 152 VCMQCTAPFT 161 (338)
Q Consensus 152 ~C~~C~~~F~ 161 (338)
.|..|+..|.
T Consensus 75 ~C~~CG~~~e 84 (119)
T 2kdx_A 75 ECKDCSHVFK 84 (119)
T ss_dssp ECSSSSCEEC
T ss_pred EcCCCCCEEe
Confidence 4555555555
No 123
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=25.33 E-value=18 Score=28.19 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=32.3
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
..|.+|...|.-- .. -.||++||..|....... ..+.|-.|...+..
T Consensus 24 ~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADP----VE-TSCKHLFCRICILRCLKV--------MGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSE----EE-CTTSCEEEHHHHHHHHHH--------TCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCc----EE-cCCCCcccHHHHHHHHhH--------CcCcCCCCCCCCCH
Confidence 5799998877631 11 479999999998654221 13468888877654
No 124
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.97 E-value=19 Score=27.43 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=21.7
Q ss_pred CccCCCCcCCccccccccccccCCceEeCCCCCce
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~ 185 (338)
-.|.+|...|.- -.--..||++||..|....
T Consensus 8 ~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~ 38 (94)
T 2yu4_A 8 FTCPITKEEMKK----PVKNKVCGHTYEEDAIVRM 38 (94)
T ss_dssp CBCTTTCSBCSS----EEEESSSCCEEEHHHHHHH
T ss_pred eECcCcCchhcC----CEEcCCCCCeecHHHHHHH
Confidence 579999887652 1222359999999997654
No 125
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.71 E-value=22 Score=22.50 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=8.2
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 46888888775
No 126
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=24.31 E-value=34 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=15.2
Q ss_pred CccCCCCcCCcccccc----ccccccCCceEeC
Q 019595 151 TVCMQCTAPFTALTRG----RHHCRFCGGVFCR 179 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~ 179 (338)
..|..|++. . + +| --||+.||..|-.
T Consensus 37 y~CpfCgk~-~-v-kR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 37 YDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCCSSSCSS-C-C-EEEETTEEECTTTCCEEEC
T ss_pred CcCCCCCCc-e-e-eecccceEEcCCCCCEEeC
Confidence 567777753 3 3 22 2467777776644
No 127
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=24.24 E-value=42 Score=23.54 Aligned_cols=27 Identities=30% Similarity=0.584 Sum_probs=16.0
Q ss_pred CCccCCCCc-CCccccccccccccCCce
Q 019595 150 TTVCMQCTA-PFTALTRGRHHCRFCGGV 176 (338)
Q Consensus 150 ~~~C~~C~~-~F~~l~rRrHHCR~CG~v 176 (338)
...|..|+. .|-.-..-|++|..||..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCE
Confidence 467888887 331111136777777765
No 128
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.99 E-value=32 Score=26.05 Aligned_cols=31 Identities=29% Similarity=0.675 Sum_probs=20.5
Q ss_pred CccCCCCcCCccccccccccccCCc----eEeCCCCC
Q 019595 151 TVCMQCTAPFTALTRGRHHCRFCGG----VFCRICTK 183 (338)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~----vfC~~Cs~ 183 (338)
-.|..|++.- +.-+|.+|..|-. -+|..|-.
T Consensus 22 ~~Cd~C~~~p--I~G~RykC~~C~d~~~yDLC~~C~~ 56 (82)
T 2fc7_A 22 FKCDNCGIEP--IQGVRWHCQDCPPEMSLDFCDSCSD 56 (82)
T ss_dssp CCCSSSCCSS--EESCEEEESSSCSSSCCEEEGGGTT
T ss_pred CCCCCCCCCc--ceeceEECCcCCCCcceecHHHHHh
Confidence 4799998621 3346899998864 46666643
No 129
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.93 E-value=29 Score=24.21 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=7.4
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 16 ~~C~~C~k~f~ 26 (77)
T 2ct1_A 16 YECYICHARFT 26 (77)
T ss_dssp EECTTTCCEES
T ss_pred eECCCcCchhC
Confidence 45777777775
No 130
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.91 E-value=26 Score=18.83 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=5.5
Q ss_pred cccccCCceE
Q 019595 168 HHCRFCGGVF 177 (338)
Q Consensus 168 HHCR~CG~vf 177 (338)
+.|..||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4566666554
No 131
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.81 E-value=30 Score=18.56 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=7.8
Q ss_pred ccccccCCceEe
Q 019595 167 RHHCRFCGGVFC 178 (338)
Q Consensus 167 rHHCR~CG~vfC 178 (338)
.+.|..||+.|-
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 456777777663
No 132
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.42 E-value=30 Score=18.58 Aligned_cols=12 Identities=33% Similarity=1.043 Sum_probs=7.9
Q ss_pred ccccccCCceEe
Q 019595 167 RHHCRFCGGVFC 178 (338)
Q Consensus 167 rHHCR~CG~vfC 178 (338)
.+.|..||+.|-
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 466777777663
No 133
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.20 E-value=57 Score=23.33 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=9.5
Q ss_pred CccCCCCcCCcc
Q 019595 151 TVCMQCTAPFTA 162 (338)
Q Consensus 151 ~~C~~C~~~F~~ 162 (338)
-.|..|++.|..
T Consensus 9 ~~C~~C~~~f~~ 20 (96)
T 2dmd_A 9 HKCEVCGKCFSR 20 (96)
T ss_dssp CCBTTTTBCCCC
T ss_pred eECCCCCCccCC
Confidence 478999998863
No 134
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=23.15 E-value=23 Score=27.99 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=36.6
Q ss_pred CCccCCCCCCccCCCCcCCccccc---------ccccc----ccCCceEeCCCCCceeecCccCCCCcceeecccccccc
Q 019595 142 PEWLPDSSTTVCMQCTAPFTALTR---------GRHHC----RFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (338)
Q Consensus 142 p~W~pd~~~~~C~~C~~~F~~l~r---------RrHHC----R~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (338)
..|.-|.+...|.+|...|...-. ....| -.||++|+..|...... ....|-.|....
T Consensus 29 ~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---------~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 29 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---------TRQVCPLDNREW 99 (106)
T ss_dssp EEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT---------TCSBCSSSCSBC
T ss_pred eEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH---------cCCcCcCCCCcc
Confidence 346556667899999998872100 00111 46999999999866521 135688887654
No 135
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=22.80 E-value=25 Score=27.14 Aligned_cols=11 Identities=27% Similarity=0.630 Sum_probs=6.0
Q ss_pred ccccccCCceE
Q 019595 167 RHHCRFCGGVF 177 (338)
Q Consensus 167 rHHCR~CG~vf 177 (338)
.+.|..||+.|
T Consensus 74 ~~~C~~C~k~f 84 (129)
T 2wbt_A 74 QFVCPLCLMPF 84 (129)
T ss_dssp SEECTTTCCEE
T ss_pred CeECCCCCccc
Confidence 34456665555
No 136
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.75 E-value=32 Score=18.51 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=7.3
Q ss_pred ccccccCCceEe
Q 019595 167 RHHCRFCGGVFC 178 (338)
Q Consensus 167 rHHCR~CG~vfC 178 (338)
.+.|..||+.|-
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 355666776653
No 137
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=22.21 E-value=59 Score=23.78 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=8.5
Q ss_pred CccCCCCcCCc
Q 019595 151 TVCMQCTAPFT 161 (338)
Q Consensus 151 ~~C~~C~~~F~ 161 (338)
-.|..|++.|.
T Consensus 18 ~~C~~C~~~f~ 28 (106)
T 2ee8_A 18 FICKFCGRHFT 28 (106)
T ss_dssp CBCSSSCCBCS
T ss_pred eECCCCCCccC
Confidence 46888888885
No 138
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.07 E-value=32 Score=18.33 Aligned_cols=10 Identities=50% Similarity=1.115 Sum_probs=5.9
Q ss_pred cccccCCceE
Q 019595 168 HHCRFCGGVF 177 (338)
Q Consensus 168 HHCR~CG~vf 177 (338)
+.|..||+.|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2m0f_A 3 LKCRECGKQF 12 (29)
T ss_dssp EECTTTSCEE
T ss_pred ccCCCCCCcc
Confidence 4566666655
No 139
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.06 E-value=37 Score=29.95 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=11.2
Q ss_pred CCCCccCCCCC-CccCCCCc
Q 019595 140 EPPEWLPDSST-TVCMQCTA 158 (338)
Q Consensus 140 ~~p~W~pd~~~-~~C~~C~~ 158 (338)
.++.|.++-.. ..|..|+.
T Consensus 10 ~~~~~~~~ln~~~~CPECGs 29 (197)
T 3k1f_M 10 RAGRRGPNLNIVLTCPECKV 29 (197)
T ss_dssp ---CCSSCCCCCCCCTTTCC
T ss_pred CccccccccccCeECcCCCC
Confidence 45678776444 36888887
No 140
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=21.64 E-value=23 Score=29.56 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=32.5
Q ss_pred CCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeecccccccccc
Q 019595 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (338)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (338)
.-.|.+|...|.. -..+ .||++||..|....... ....|-.|...+..
T Consensus 18 ~~~C~IC~~~~~~----pv~~-~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMALRE----AVQT-PCGHRFCKACIIKSIRD--------AGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSBCSS----EEEC-TTSCEEEHHHHHHHHHH--------HCSBCTTTCCBCCG
T ss_pred CCCCCCCChhhcC----cEEC-CCCCHHHHHHHHHHHHh--------CCCCCCCCccCcch
Confidence 3589999987762 2234 79999999998654211 12278888777654
No 141
>3ifu_A Non-structural protein; PRRSV, NSP1, zinc finger, papain-like cysteine protease, transcription; 2.42A {Porcine reproductive and respiratorysyndrome virus}
Probab=21.44 E-value=50 Score=27.99 Aligned_cols=19 Identities=42% Similarity=0.934 Sum_probs=16.4
Q ss_pred CCceEeCCCCCceeecCcc
Q 019595 173 CGGVFCRICTKGRCLLPVR 191 (338)
Q Consensus 173 CG~vfC~~Cs~~~~~lP~~ 191 (338)
=|+|+|..|.+.+.++|..
T Consensus 20 ~gqvyctrclsar~llpl~ 38 (180)
T 3ifu_A 20 EGQVYCTRCLSARSLLPLN 38 (180)
T ss_dssp SSCEEETTTCCBCCCCCSS
T ss_pred cCeEeeeehhcccccCChh
Confidence 4999999999999988743
No 142
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=21.26 E-value=37 Score=23.44 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=6.6
Q ss_pred ccCCCCcCCc
Q 019595 152 VCMQCTAPFT 161 (338)
Q Consensus 152 ~C~~C~~~F~ 161 (338)
.|..|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (82)
T 2kmk_A 3 DCKICGKSFK 12 (82)
T ss_dssp ECSSSCCEES
T ss_pred cCCCCccccc
Confidence 4667777764
No 143
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.56 E-value=59 Score=22.46 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=15.7
Q ss_pred ccCCCCcCCccccc---cccccccCCc
Q 019595 152 VCMQCTAPFTALTR---GRHHCRFCGG 175 (338)
Q Consensus 152 ~C~~C~~~F~~l~r---RrHHCR~CG~ 175 (338)
.|..|++.|+.--- ---+|..||.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCc
Confidence 68899999874211 1356777775
No 144
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=20.08 E-value=57 Score=24.09 Aligned_cols=29 Identities=28% Similarity=0.768 Sum_probs=21.5
Q ss_pred CCCccCCCCcCCccccccccccccC-CceEeCCCCC
Q 019595 149 STTVCMQCTAPFTALTRGRHHCRFC-GGVFCRICTK 183 (338)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~C-G~vfC~~Cs~ 183 (338)
+-.-|.+|..-=+ ..|.-| |.+||..|-.
T Consensus 7 e~pWC~ICneDAt------lrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 7 GLPWCCICNEDAT------LRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CCSSCTTTCSCCC------EEETTTTSEEECSSHHH
T ss_pred CCCeeEEeCCCCe------EEecCCCCceehHHHHH
Confidence 4457999998633 348888 8999999864
No 145
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.36 E-value=22 Score=18.91 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=8.1
Q ss_pred ccccccCCceEeC
Q 019595 167 RHHCRFCGGVFCR 179 (338)
Q Consensus 167 rHHCR~CG~vfC~ 179 (338)
.+.|..||+.|-.
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 4567777776643
Done!