Query 019596
Match_columns 338
No_of_seqs 242 out of 1142
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:01:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00171 photosystem light-ha 100.0 1.4E-97 3E-102 715.9 26.1 317 18-336 6-323 (324)
2 PLN00025 photosystem II light 100.0 2.6E-67 5.6E-72 496.0 17.0 214 112-335 42-255 (262)
3 PLN00187 photosystem II light- 100.0 2.2E-63 4.9E-68 473.6 15.3 202 110-336 41-285 (286)
4 PLN00098 light-harvesting comp 100.0 9.1E-62 2E-66 459.4 16.9 204 113-337 54-266 (267)
5 PLN00097 photosystem I light h 100.0 7.1E-61 1.5E-65 448.2 16.2 195 117-332 40-243 (244)
6 PLN00048 photosystem I light h 100.0 5.2E-61 1.1E-65 453.6 14.8 211 113-337 34-261 (262)
7 PLN00101 Photosystem I light-h 100.0 5.1E-61 1.1E-65 450.7 14.6 198 113-336 45-250 (250)
8 PLN00147 light-harvesting comp 100.0 4E-60 8.6E-65 445.3 19.1 203 114-336 38-250 (252)
9 PLN00099 light-harvesting comp 100.0 7.3E-59 1.6E-63 435.0 15.7 194 119-336 42-237 (243)
10 PLN00100 light-harvesting comp 100.0 9.1E-57 2E-61 420.4 13.2 178 118-335 32-209 (246)
11 PLN00170 photosystem II light- 100.0 1E-49 2.2E-54 374.9 15.3 179 119-320 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 2.7E-41 6E-46 295.0 13.3 153 132-309 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 1.1E-40 2.3E-45 306.9 14.1 158 132-317 46-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 1.2E-34 2.6E-39 265.7 12.5 145 146-316 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 1E-15 2.2E-20 146.0 6.8 69 262-330 76-151 (267)
16 PLN00101 Photosystem I light-h 99.6 2.1E-15 4.6E-20 142.6 5.8 55 262-316 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 1.2E-14 2.6E-19 137.7 5.6 53 262-314 59-111 (252)
18 PLN00170 photosystem II light- 99.5 4.1E-14 9E-19 134.1 5.8 56 262-317 71-126 (255)
19 PLN00171 photosystem light-ha 99.5 4.7E-14 1E-18 137.3 5.4 55 262-316 124-178 (324)
20 PLN00097 photosystem I light h 99.4 7.1E-14 1.5E-18 131.8 5.6 54 262-315 58-111 (244)
21 PLN00025 photosystem II light 99.4 9.7E-14 2.1E-18 132.2 5.6 53 262-314 67-119 (262)
22 PLN00100 light-harvesting comp 99.4 1.5E-13 3.3E-18 129.7 5.2 50 262-311 49-98 (246)
23 PLN00048 photosystem I light h 99.4 1.3E-13 2.7E-18 131.5 4.7 53 137-189 186-238 (262)
24 PLN00187 photosystem II light- 99.4 3.7E-13 8E-18 129.5 5.3 53 137-189 211-263 (286)
25 PLN00089 fucoxanthin-chlorophy 99.4 5.8E-13 1.2E-17 123.3 5.9 52 138-189 153-205 (209)
26 PLN00099 light-harvesting comp 99.4 4.1E-13 8.9E-18 126.8 4.7 51 262-312 58-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 2.6E-12 5.6E-17 112.5 4.7 50 135-184 107-156 (156)
28 PLN00120 fucoxanthin-chlorophy 99.0 5.1E-10 1.1E-14 103.3 5.3 40 143-186 154-193 (202)
29 PHA02337 putative high light i 98.0 4.7E-06 1E-10 57.1 3.2 28 288-315 4-31 (35)
30 PLN00084 photosystem II subuni 97.8 1.8E-05 3.9E-10 71.7 3.5 46 282-327 131-177 (214)
31 PLN00014 light-harvesting-like 97.5 7.5E-05 1.6E-09 70.5 3.1 37 286-322 159-195 (250)
32 PHA02337 putative high light i 97.1 0.0005 1.1E-08 47.2 2.9 27 162-188 3-29 (35)
33 PLN00014 light-harvesting-like 95.4 0.0077 1.7E-07 57.2 1.6 30 162-191 160-189 (250)
34 PLN00084 photosystem II subuni 92.0 0.099 2.1E-06 47.9 2.2 35 157-191 131-166 (214)
35 PLN02449 ferrochelatase 47.8 13 0.00027 39.3 2.3 22 296-317 463-484 (485)
36 PF14672 LCE: Late cornified e 25.1 33 0.00071 28.0 0.8 10 18-27 23-32 (83)
37 PHA00649 hypothetical protein 25.0 89 0.0019 25.1 3.1 31 153-184 31-68 (83)
No 1
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.4e-97 Score=715.92 Aligned_cols=317 Identities=81% Similarity=1.348 Sum_probs=295.2
Q ss_pred ccccCC-CCCchhHHHHhcCccccccccCCCCcchhhhhHhhhhhhhhhcccchhHHHHhhcChhhHHHHHHHHHhhHHh
Q 019596 18 SCCSSS-SGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAA 96 (338)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (338)
||-+|| ++.-++++++++++|++.. +++.+++|||||||+|||+||||+|||++|+||||+||++||+|++++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (324)
T PLN00171 6 SSSSSSFSGQHSLPRILASKPRRRRA--TRRPASSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAA 83 (324)
T ss_pred cccccccccccccchhhccccccccc--cCCCCccchhhHHhhhheeeeecccHHHHHHHhcCcHHHHHHHHHHHhhHHH
Confidence 444444 3445689999999999988 7778999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHh
Q 019596 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176 (338)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~ 176 (338)
+++++++++.++++|+.+.||+++|++||||+++++|+||||++|||||||||||++||++++||||+|||||||||||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~ 163 (324)
T PLN00171 84 VEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAA 163 (324)
T ss_pred HHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCccccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC
Q 019596 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256 (338)
Q Consensus 177 vG~lv~Ell~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g 256 (338)
+|+++||++++.|.+++++|+||++|+..+++..++|+++|+..+++.+.+.+++++|+++|+++|++|+.++...++.+
T Consensus 164 ~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g 243 (324)
T PLN00171 164 LGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG 243 (324)
T ss_pred hhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc
Confidence 99999999998888888889999999888888888898888765666788999999999999999999998876555556
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (338)
Q Consensus 257 ~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~ 336 (338)
.+.|||..||||.+|||||+++|+++++++|++|||||||||+||+||++|+.+||+||++||.+|++||+||||+++++
T Consensus 244 ~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 244 IYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred ccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 67899999999988999999999999999999999999999999999999999999999999999999999999999985
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=2.6e-67 Score=496.03 Aligned_cols=214 Identities=52% Similarity=0.942 Sum_probs=192.0
Q ss_pred ccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCcc
Q 019596 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (338)
Q Consensus 112 ~~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~ 191 (338)
+.+.||+++|++||||++.++|+||||++||||||||+||++||++++||||+|||||||||||++||++||+++..| +
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g-~ 120 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG-V 120 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC-c
Confidence 567899999999999988889999999999999999999999999999999999999999999999999999998766 4
Q ss_pred ccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCC
Q 019596 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 271 (338)
Q Consensus 192 ~f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gF 271 (338)
.|+++.||++|...++...++|++.|.+. +.+.+.++.++|+++|+.+|.+|+.+. +.++ ..|..||||+ |
T Consensus 121 ~~~~~~W~~ag~~~~~~gg~~y~~~p~~~--~~~~~~a~~~~qv~lmg~~E~~r~~~~----~~~~--~~d~~yPG~~-F 191 (262)
T PLN00025 121 KFGEAVWFKAGAQIFSEGGLDYLGNPSLV--HAQSILAIWACQVVLMGAVEGYRVNGG----PLGE--GLDPLYPGGS-F 191 (262)
T ss_pred CcCcccccccccccccccccccccCcccc--hhhhHHHHHHHHHHHHHHHHHhcccCC----cccc--cccCcCCccc-C
Confidence 57788999999877777788999887543 346667788899999999999998752 2221 2367899997 9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhh
Q 019596 272 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (338)
Q Consensus 272 DPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~ 335 (338)
|||||++|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+|||+++++
T Consensus 192 DPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~ 255 (262)
T PLN00025 192 DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYA 255 (262)
T ss_pred CccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999976
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.2e-63 Score=473.63 Aligned_cols=202 Identities=42% Similarity=0.724 Sum_probs=174.1
Q ss_pred hcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHH--------------------------------
Q 019596 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA-------------------------------- 157 (338)
Q Consensus 110 ~~~~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~-------------------------------- 157 (338)
.+..+.+|+++|++|||+. ++|+|||||+||||||||+||++||+.
T Consensus 41 ~~~~~~~~~~~r~~w~p~~--~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
T PLN00187 41 AKKKSSKVGADRPLWFPGA--KAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKS 118 (286)
T ss_pred cccCccCCCCCccccCCCC--CCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccc
Confidence 3346779999999999874 699999999999999999999999986
Q ss_pred -----------HHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccccCcchhhhhcccccCCCcccccCCCcccccchhh
Q 019596 158 -----------FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226 (338)
Q Consensus 158 -----------~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~ 226 (338)
|+||||+|||||||||||++||++||+++ |. .||++|...+... .+|++.|.. ..
T Consensus 119 ~~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~------~W~~aG~~~~~~g-~~y~g~~~p-----~~ 184 (286)
T PLN00187 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV------TWQDAGKVELVDG-SSYLGQPLP-----FS 184 (286)
T ss_pred cccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC------ccccccccccccc-ccccccccc-----hh
Confidence 69999999999999999999999999973 32 5999997654322 247766521 23
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019596 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306 (338)
Q Consensus 227 i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~ 306 (338)
+..+.++|+++|+++|.+|+.+. + ..|..||||++|||||+.+|+++++++|++|||||||||+|++||++
T Consensus 185 ~~~l~~iqvllmG~~E~~R~~~~---~------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~v 255 (286)
T PLN00187 185 ITTLIWIEVLVIGYIEFQRNAEL---D------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAV 255 (286)
T ss_pred HHHHHHHHHHHHHHHHhhhccCC---C------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56678999999999999997642 1 23567999988999999999999999999999999999999999999
Q ss_pred hhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596 307 QAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (338)
Q Consensus 307 Qe~vTGkGPlenL~~hladP~~~N~~~~~~ 336 (338)
|+++||+||++||.+|++||+||||++++.
T Consensus 256 q~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 256 QAAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred HHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 999999999999999999999999999874
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=9.1e-62 Score=459.40 Aligned_cols=204 Identities=38% Similarity=0.705 Sum_probs=173.4
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccc
Q 019596 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (338)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~ 192 (338)
...+|+++|++|+|+. ++|+||||++|||+||||+||++|+++++||||+|||||||||||++|+++||+++..|.
T Consensus 54 ~~~~~~~~r~~w~Pg~--~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-- 129 (267)
T PLN00098 54 VCEPLPPDRPLWFPGS--SPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-- 129 (267)
T ss_pred ccccCCCCccccCCCC--CCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc--
Confidence 4567999999999874 599999999999999999999999999999999999999999999999999999887775
Q ss_pred cCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC-------ccC-CCCCC
Q 019596 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-------IFL-PGDIN 264 (338)
Q Consensus 193 f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g-------~~~-pGD~~ 264 (338)
+..+.||++|.. +|++.| ..+.++|+++|+.+|.+|+.++...+..+ ... .+|..
T Consensus 130 ~~~~~w~~Ag~~-------~~~~~~----------~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~ 192 (267)
T PLN00098 130 IENFSWYDAGAR-------EYFADP----------TTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVG 192 (267)
T ss_pred ccccccccccch-------hhccCc----------hHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCC
Confidence 345679988753 344433 13567899999999999987753221111 011 23668
Q ss_pred CCCCCCCCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhhc
Q 019596 265 YPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 337 (338)
Q Consensus 265 yPGg~gFDPLgL~k-dpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~~ 337 (338)
||||++||||||.+ |+++++++|+||||||||||+||+||++|+.+||+||++||.+||+||+||||++++..
T Consensus 193 yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 193 YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99999999999975 89999999999999999999999999999999999999999999999999999999864
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=7.1e-61 Score=448.16 Aligned_cols=195 Identities=39% Similarity=0.628 Sum_probs=166.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccccCcc
Q 019596 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196 (338)
Q Consensus 117 y~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f~~p 196 (338)
.+++|++|||+. ++|+||||++||||||||+||++|+++++|||++||+||||||||++|+++||+++..|.. ..+
T Consensus 40 ~~~~R~~w~Pg~--~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~--~~p 115 (244)
T PLN00097 40 AAADRPTWLPGK--AAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA--DLP 115 (244)
T ss_pred cCCCCcccCCCC--CCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc--cCC
Confidence 457899999764 6999999999999999999999999999999999999999999999999999999887753 346
Q ss_pred hhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccC-----CC----CccCCCCCCCCC
Q 019596 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALE-----PL----GIFLPGDINYPG 267 (338)
Q Consensus 197 ~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~-----p~----g~~~pGD~~yPG 267 (338)
.||++|... .|+.. ...+..+|+++|+.+|.+|+.++...+ |. ....++|..|||
T Consensus 116 ~W~~Ag~~~------~~~~~----------~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPg 179 (244)
T PLN00097 116 NWIDAAKWD------GYWAG----------AGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPK 179 (244)
T ss_pred ccccCCcch------hcccc----------chhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCC
Confidence 899987431 13211 123567788899999999988764321 11 113467889999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHH
Q 019596 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 332 (338)
Q Consensus 268 g~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~ 332 (338)
+. ||||||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+|||++
T Consensus 180 g~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 180 GL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 95 99999999999999999999999999999999999999999999999999999999999987
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=5.2e-61 Score=453.63 Aligned_cols=211 Identities=42% Similarity=0.678 Sum_probs=175.1
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHH------HHHHHHHHHHhhhhHHHHHhhhhhhhhhhh
Q 019596 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM------AFQKYFNFEILHARWAMLGALGALVPEVLD 186 (338)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe------~~~~~ReAELkHGR~AMLA~vG~lv~Ell~ 186 (338)
...+|+++|++|+++ .++|+||||++|||||||||||+ ||+ +.+|+|++||+||||||||++|+++||+++
T Consensus 34 ~~~~~~~~r~~w~p~--~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 34 PPAKQGADRQLWFAS--KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCCCceecCC--CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 456789999999976 46999999999999999999998 443 568999999999999999999999999998
Q ss_pred ccCccccC-cchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC--------c
Q 019596 187 MVGAFHLV-EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------I 257 (338)
Q Consensus 187 ~~G~~~f~-~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g--------~ 257 (338)
+.|.+... ...||++|.... ....+|++.| .++.++|+++|+++|.+|+.++...++.+ .
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p----------~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~ 179 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIPP-AGTYDYWADP----------YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEK 179 (262)
T ss_pred cCCcccccccccccccccccc-ccccccccch----------hHHHHHHHHHhhheeeeccccccCCCcccccccccchh
Confidence 77764322 236999886432 2345676554 24567899999999999988754322211 0
Q ss_pred cC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhh
Q 019596 258 FL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (338)
Q Consensus 258 ~~--pGD~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~ 335 (338)
.. .+|..||||++|||||+++|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++++
T Consensus 180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~ 259 (262)
T PLN00048 180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259 (262)
T ss_pred ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccc
Confidence 11 2477899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hc
Q 019596 336 KS 337 (338)
Q Consensus 336 ~~ 337 (338)
++
T Consensus 260 ~~ 261 (262)
T PLN00048 260 KF 261 (262)
T ss_pred cc
Confidence 64
No 7
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=5.1e-61 Score=450.72 Aligned_cols=198 Identities=39% Similarity=0.776 Sum_probs=168.4
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccc
Q 019596 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (338)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~ 192 (338)
.+.++.++|+.|+|.. ++|+||||++|||+||||+||++|+++++|||++||+||||||||++|+++||+++..|.+
T Consensus 45 ~~~~~~~~r~~W~P~~--~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~- 121 (250)
T PLN00101 45 RSFKVEAKKGEWLPGL--ASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII- 121 (250)
T ss_pred ccccccccccccCCCC--CCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc-
Confidence 4567778999999764 5999999999999999999999999999999999999999999999999999999887764
Q ss_pred cCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC--------ccCCCCCC
Q 019596 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------IFLPGDIN 264 (338)
Q Consensus 193 f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g--------~~~pGD~~ 264 (338)
..|.||++|.. +|++.+ ..+.++|+++|+.+|++|+.++...+..+ ...+||..
T Consensus 122 -~~p~w~~ag~~-------~~~~~~----------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~ 183 (250)
T PLN00101 122 -NAPQWYDAGKA-------EYFASS----------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 183 (250)
T ss_pred -CCCccccccch-------hhcccc----------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCcccc
Confidence 34689998753 243322 24567788999999999988765322211 12368899
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (338)
Q Consensus 265 yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~ 336 (338)
||||. ||||||+++ +++|+||||||||||+||+||++|+++||+||++||.+||+||+||||+++++
T Consensus 184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 99995 999999876 37999999999999999999999999999999999999999999999999863
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=4e-60 Score=445.32 Aligned_cols=203 Identities=41% Similarity=0.727 Sum_probs=170.8
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCcccc
Q 019596 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193 (338)
Q Consensus 114 ~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f 193 (338)
+..++++|++|+|.. ++|+||||++|||+||||+||++|+++++||||+|||||||||||++|+++||+++..|.+.
T Consensus 38 ~~~~~~~R~~wlP~~--~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~- 114 (252)
T PLN00147 38 NPVVAQERPTWLPGL--DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN- 114 (252)
T ss_pred cccCCCCccccCCCC--CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC-
Confidence 457789999999875 59999999999999999999999999999999999999999999999999999988777533
Q ss_pred CcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC---cc-------CCCCC
Q 019596 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG---IF-------LPGDI 263 (338)
Q Consensus 194 ~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g---~~-------~pGD~ 263 (338)
.|.||++|...+. + . ....++++|+++|+.+|.+|+.++...+... .+ ..-|.
T Consensus 115 -~p~w~~ag~~~~~-----~-~----------~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~ 177 (252)
T PLN00147 115 -LPVWYEAGAVKFE-----F-A----------STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEP 177 (252)
T ss_pred -Ccchhhcccchhc-----c-c----------cchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCC
Confidence 4679987743321 1 1 1134678899888889999987654321110 00 01246
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (338)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~ 336 (338)
.||||++||||||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++++.
T Consensus 178 ~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~ 250 (252)
T PLN00147 178 GYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLS 250 (252)
T ss_pred CCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999975
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=7.3e-59 Score=434.99 Aligned_cols=194 Identities=41% Similarity=0.717 Sum_probs=161.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccccCcchh
Q 019596 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198 (338)
Q Consensus 119 ~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f~~p~W 198 (338)
++|..|+|.. ++|+||||++|||+||||+||++++++++||||+|||||||||||++|+++||+++. +.|
T Consensus 42 ~~~~~w~P~~--~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~--------~~w 111 (243)
T PLN00099 42 TMSADWMPGQ--PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--------GNW 111 (243)
T ss_pred cccccccCCC--CCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------CCc
Confidence 5667888764 599999999999999999999999999999999999999999999999999998642 247
Q ss_pred hhhccc-ccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 019596 199 WRVGYS-KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (338)
Q Consensus 199 ~~aG~~-~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~ 277 (338)
++++.- .+.+...+|++.|. ....++.++++|+++++.+|.+|+... .+++..|||| .|||||+.
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~----~~~~l~~~~~iqvl~ig~~E~~r~~~~---------~~~~~~yPGd-~FDPlGl~ 177 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPV----PWGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYS 177 (243)
T ss_pred ccccchhccCcchhhhccCcc----chhhHHHHHHHHHHHHHHHHHHhhccC---------CCCCCcCCCC-cCCccccc
Confidence 766531 23333445655542 123467788999888888898875321 1234579999 79999999
Q ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (338)
Q Consensus 278 kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe-~vTGkGPlenL~~hladP~~~N~~~~~~ 336 (338)
+|+++++++|+||||||||||+||+||++|+ ++||+||++||.+||+||+|||+++.+.
T Consensus 178 kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~ 237 (243)
T PLN00099 178 KDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 237 (243)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeec
Confidence 9999999999999999999999999999999 6799999999999999999999998763
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=9.1e-57 Score=420.44 Aligned_cols=178 Identities=37% Similarity=0.651 Sum_probs=151.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccccCcch
Q 019596 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197 (338)
Q Consensus 118 ~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f~~p~ 197 (338)
..+|++|+|.. ++|+||||++||||||||+||++|+++++||||+|||||||||||++|+++||+++ + |.
T Consensus 32 ~~~r~~W~P~~--~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~------~--P~ 101 (246)
T PLN00100 32 ARARPMWYPGA--TAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG------L--PK 101 (246)
T ss_pred cCCCcccCCCC--CCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc------c--cc
Confidence 46788888653 59999999999999999999999999999999999999999999999999999854 2 35
Q ss_pred hhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 019596 198 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (338)
Q Consensus 198 W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~ 277 (338)
||++|... |.. .+..++++|+++|+.+|.+|+.++.. +|+.++||+++|||||++
T Consensus 102 w~~ag~~~-------~~~----------~~~~l~~iqill~g~~E~~r~~~~~~--------~g~~~~pg~~~FDPLGl~ 156 (246)
T PLN00100 102 FWEAGAEK-------YGL----------DLQTLVLIQVVVMAVLEAARYRGFMK--------TGESGVLSFFPFDPTGMD 156 (246)
T ss_pred hhhcchhh-------hcc----------chhHHHHHHHHHHHHHhhhccccccc--------ccccCCCCCCCCCccccc
Confidence 88876432 110 12356788999998899999876421 244557888899999996
Q ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhh
Q 019596 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (338)
Q Consensus 278 kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~ 335 (338)
+ +++|+||||||||||+||+||++|+++||+||++||.+|++||+||||+++.
T Consensus 157 ~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 157 S-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred H-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 3 6899999999999999999999999999999999999999999999999864
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1e-49 Score=374.92 Aligned_cols=179 Identities=37% Similarity=0.615 Sum_probs=145.9
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccccC
Q 019596 119 EERPRWLGPIP----YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194 (338)
Q Consensus 119 ~~r~~wl~~~~----~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f~ 194 (338)
.+|+.|++... ...|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++ |
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g----- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G----- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--C-----
Confidence 56667776542 257999999999999999999999999999999999999999999999999999964 2
Q ss_pred cchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC--------------ccCC
Q 019596 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------------IFLP 260 (338)
Q Consensus 195 ~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g--------------~~~p 260 (338)
..||++|... .++ .| ..+.++..+|+++|+++|.+|+.++...+... ....
T Consensus 122 -~~w~~aG~~~------~~~-~p-------~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~ 186 (255)
T PLN00170 122 -IPWFEAGADP------GAI-AP-------FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANAT 186 (255)
T ss_pred -CChhhCCccc------ccc-Cc-------cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccC
Confidence 2599988642 011 11 12345778899999999999998875322110 0124
Q ss_pred CCCCCCCCCCCCCCCCCC---------CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhh
Q 019596 261 GDINYPGGALFDPLNLSK---------DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 320 (338)
Q Consensus 261 GD~~yPGg~gFDPLgL~k---------dpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~ 320 (338)
||..||||..||||||++ |+++++++|+||||||||||+|++||++|+ .||+||++||.
T Consensus 187 g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 187 GLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred CCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 677899997799999985 789999999999999999999999999999 79999999973
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=2.7e-41 Score=295.04 Aligned_cols=153 Identities=44% Similarity=0.671 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCc-cccC-cchhhhhcccccCCC
Q 019596 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA-FHLV-EPVWWRVGYSKLQGE 209 (338)
Q Consensus 132 ~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~-~~f~-~p~W~~aG~~~~~g~ 209 (338)
+|+||||+++||+||||+||++++ +++|||++|||||||||||++|++++|+++..+. ..+. .+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 489999999999999999999887 9999999999999999999999999999754321 1111 122433210
Q ss_pred cccccCCCcccccchhhHHHHHHHHHHHhhh-hhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 019596 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288 (338)
Q Consensus 210 ~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g-~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lk~ 288 (338)
+ + ++..+++|++++++ +|.++.......+..+ ..+..|||+++|||+|+.+|+++++++|+
T Consensus 74 -~-----~---------~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~---~~~~~~pG~~~~dplgl~~~~~~~~~~~~ 135 (156)
T PF00504_consen 74 -I-----P---------VPAAGWAQILLFIGALEPWRQQGVPEPGEGG---GKDGRYPGDLGFDPLGLAKDPEEKEFMQL 135 (156)
T ss_dssp -S-----S---------SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS---SSSSSSSSSSSSSTSSTSSSCHSHHCHHH
T ss_pred -h-----h---------hhhHHHHHHHHHHhHhhhhhcccccCCcccc---cccccCccccccchhhhhhhhhhhHHHHH
Confidence 0 0 22345556665554 5988776532211111 23457999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhh
Q 019596 289 KEIKNGRLAMVAWLGFYIQAA 309 (338)
Q Consensus 289 kELKNGRLAMlA~lGf~~Qe~ 309 (338)
+|||||||||+||+|+++|+.
T Consensus 136 ~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 136 AELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999983
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=306.90 Aligned_cols=158 Identities=29% Similarity=0.361 Sum_probs=117.7
Q ss_pred CCCCCCCCCCCCCCCcCCCCCC-CHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCcc-ccCcchhhhhcccccCCC
Q 019596 132 YPSYLTGELPGDYGFDVAGLSK-DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYSKLQGE 209 (338)
Q Consensus 132 ~P~~LdGslpGD~GFDPLGLs~-dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~-~f~~p~W~~aG~~~~~g~ 209 (338)
.|+.|||+ .||+||||+||++ ++++++|||++|||||||||||++|+++||.++.+|.+ .|.
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~--------------- 109 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFA--------------- 109 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcccccc---------------
Confidence 57789999 9999999999985 67889999999999999999999999999997766632 111
Q ss_pred cccccCCCcccccchhhHHHHH-HHHHHHhhh-hhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCC-CCCHHHHHHH
Q 019596 210 TLDYLGIPGLHLAGSQGVIVIA-ICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEEL 286 (338)
Q Consensus 210 ~l~yl~~p~l~~a~~~~i~~i~-~~Qill~~g-~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL-~kdpe~~~~l 286 (338)
+.|+. ....+.++..+ ++|++++++ +|....... . .....+ ..||||++|||||| .+|+++++++
T Consensus 110 -----~~p~~-~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~----~-~~~~~~-~~~PGd~gfdplgl~~~d~~~~~~~ 177 (209)
T PLN00089 110 -----AIPKT-IDAHDALLKSGAMIQIFAWIGFVDLAVSAPA----A-AAAAEF-DRTPGDFGFDLLALYPKDAAKMEKK 177 (209)
T ss_pred -----ccccH-HHHHHhhcccccHHHHHHHHHHHHHHHhhcc----c-cccccC-CCCCCCcCccccccCCCCHHHHHHH
Confidence 11110 01111222222 568887665 485321110 0 001123 36899999999999 4689999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhccCCCchh
Q 019596 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 317 (338)
Q Consensus 287 k~kELKNGRLAMlA~lGf~~Qe~vTGkGPle 317 (338)
|++|||||||||+||+||++|+++||+|+++
T Consensus 178 ~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 178 KDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999998763
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=265.71 Aligned_cols=145 Identities=27% Similarity=0.393 Sum_probs=104.5
Q ss_pred CcCCCCC--CCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhh-hhccCccccCcchhhhhcccccCCCcccccCCCccccc
Q 019596 146 FDVAGLS--KDPMAFQKYFNFEILHARWAMLGALGALVPEV-LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 222 (338)
Q Consensus 146 FDPLGLs--~dpe~~~~~ReAELkHGR~AMLA~vG~lv~El-l~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a 222 (338)
|||+||+ +|+++++|||++|||||||||||++|+++||+ ++.+|.+. +.+.. |-++|.. ..
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~-------------~~g~~--~~~~p~~-~~ 110 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDID-------------YSGTS--FSDIPNG-FA 110 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccc-------------ccccc--ccccccc-hh
Confidence 9999997 47899999999999999999999999999997 33333211 11211 2122221 12
Q ss_pred chhhHHHHHHHHHHHhhhh-hhhhhccccccCCCC-ccCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHhhhHHHH
Q 019596 223 GSQGVIVIAICQALLMVGP-ECARYCGIEALEPLG-IFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298 (338)
Q Consensus 223 ~~~~i~~i~~~Qill~~g~-E~~r~~g~~~~~p~g-~~~pGD~~yPG--g~gFDPLgL~kdpe~~~~lk~kELKNGRLAM 298 (338)
....++..+++|+++++++ |..+..+. .+ .+.|||.. || |++|||+ |+++++++|+||||||||||
T Consensus 111 a~~~vp~~g~~qi~~~ig~~E~~~~~~~-----~~~~~~pGd~~-~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAM 180 (202)
T PLN00120 111 ALDAIPTAGLLQILAFIGFLELAVMKDI-----TGEGEFVGDFR-NGYIDFGWDSF----DEETKLKKRAIELNQGRAAQ 180 (202)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHhhccc-----ccCCCCCCccC-CCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 2345666789999988875 97665432 11 13344431 22 4556655 78899999999999999999
Q ss_pred HHHHHHHHhhhccCCCch
Q 019596 299 VAWLGFYIQAAFTGKGPV 316 (338)
Q Consensus 299 lA~lGf~~Qe~vTGkGPl 316 (338)
|||+||++|+.++|+.|+
T Consensus 181 iai~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 181 MGILALMVHEQLGVELPI 198 (202)
T ss_pred HHHHHHHHHHHccCCCcC
Confidence 999999999999999886
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.60 E-value=1e-15 Score=145.98 Aligned_cols=69 Identities=30% Similarity=0.443 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhh-------hhhhcCCcchh
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL-------LDHISDPLHNN 330 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL-------~~hladP~~~N 330 (338)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++|+++++.|++++. .+++.||..-.
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~ 151 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLF 151 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHH
Confidence 3468999999999999999999999999999999999999999999999998877643 23567775433
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.57 E-value=2.1e-15 Score=142.63 Aligned_cols=55 Identities=35% Similarity=0.572 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPl 316 (338)
|..+|||++||||||++|+++++++|++|||||||||+|++|+++|+++|+.|++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4468999999999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.51 E-value=1.2e-14 Score=137.67 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCC
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkG 314 (338)
|..+|||++||||||.+|+++++++|.+||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 45689999999999999999999999999999999999999999999998765
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.47 E-value=4.1e-14 Score=134.13 Aligned_cols=56 Identities=36% Similarity=0.571 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchh
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 317 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPle 317 (338)
|..+|||++||||+|.+|++.++++|.+||+|||+||+|++|+++|+++||...++
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 34689999999999999999999999999999999999999999999999875443
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.46 E-value=4.7e-14 Score=137.34 Aligned_cols=55 Identities=40% Similarity=0.466 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPl 316 (338)
|..+|||+|||||||++||++++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 3467999999999999999999999999999999999999999999998866543
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.45 E-value=7.1e-14 Score=131.85 Aligned_cols=54 Identities=31% Similarity=0.397 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCc
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 315 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGP 315 (338)
|...|||++||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 335799999999999999999999999999999999999999999999998764
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.44 E-value=9.7e-14 Score=132.17 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCC
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkG 314 (338)
|..+|||++||||||++||++++++|..||||||+||+|++|+++|+++++.|
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 33579999999999999999999999999999999999999999999998654
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.41 E-value=1.5e-13 Score=129.70 Aligned_cols=50 Identities=36% Similarity=0.485 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vT 311 (338)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 44689999999999999999999999999999999999999999999975
No 23
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.41 E-value=1.3e-13 Score=131.49 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=49.0
Q ss_pred CCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccC
Q 019596 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (338)
Q Consensus 137 dGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G 189 (338)
|..+|||++|||+||++|+++++++|..||||||+||+|++||++|++++..|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 34699999999999999999999999999999999999999999999976544
No 24
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.38 E-value=3.7e-13 Score=129.50 Aligned_cols=53 Identities=36% Similarity=0.372 Sum_probs=49.1
Q ss_pred CCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccC
Q 019596 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (338)
Q Consensus 137 dGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G 189 (338)
+..+|||++|||+||++|+++++++|..||||||+||+|++|+++|++++..|
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 45689999999999999999999999999999999999999999999987554
No 25
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.37 E-value=5.8e-13 Score=123.35 Aligned_cols=52 Identities=31% Similarity=0.482 Sum_probs=47.4
Q ss_pred CCCCCCCCCcCCCC-CCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccC
Q 019596 138 GELPGDYGFDVAGL-SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (338)
Q Consensus 138 GslpGD~GFDPLGL-s~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G 189 (338)
+.+|||+||||+|| .+|+++++++|..||+|||+||+|++|+++||+++..|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 46899999999999 46899999999999999999999999999999976544
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.36 E-value=4.1e-13 Score=126.78 Aligned_cols=51 Identities=35% Similarity=0.449 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccC
Q 019596 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312 (338)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTG 312 (338)
|..+|||++||||+|++++++++++|.+||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 456899999999999999999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.28 E-value=2.6e-12 Score=112.48 Aligned_cols=50 Identities=38% Similarity=0.499 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhh
Q 019596 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184 (338)
Q Consensus 135 ~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~El 184 (338)
+.++.+|||.+|||+|+.+|++..+++|.+||+|||.||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45688999999999999989999999999999999999999999999983
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=98.98 E-value=5.1e-10 Score=103.32 Aligned_cols=40 Identities=33% Similarity=0.407 Sum_probs=35.0
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhh
Q 019596 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186 (338)
Q Consensus 143 D~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~ 186 (338)
|+||||+ |+++.+++|..||||||+||+|++|++++|++.
T Consensus 154 d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~ 193 (202)
T PLN00120 154 DFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQLG 193 (202)
T ss_pred CCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4556665 788999999999999999999999999999863
No 29
>PHA02337 putative high light inducible protein
Probab=98.02 E-value=4.7e-06 Score=57.07 Aligned_cols=28 Identities=36% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhccCCCc
Q 019596 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGP 315 (338)
Q Consensus 288 ~kELKNGRLAMlA~lGf~~Qe~vTGkGP 315 (338)
..|+-||||||+||...+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999974
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.78 E-value=1.8e-05 Score=71.74 Aligned_cols=46 Identities=33% Similarity=0.431 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcc-CCCchhhhhhhhcCCc
Q 019596 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFT-GKGPVQNLLDHISDPL 327 (338)
Q Consensus 282 ~~~~lk~kELKNGRLAMlA~lGf~~Qe~vT-GkGPlenL~~hladP~ 327 (338)
...+.|..|+.||||||+||+--++-|++| |+||+.|+...-.-|.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 457788899999999999999999999999 9999999876555553
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.47 E-value=7.5e-05 Score=70.47 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=33.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhh
Q 019596 286 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDH 322 (338)
Q Consensus 286 lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~h 322 (338)
+...|+-|||+|||||+..++-|++||+|.+.++.+.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 4558999999999999999999999999999988543
No 32
>PHA02337 putative high light inducible protein
Probab=97.08 E-value=0.0005 Score=47.22 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhhcc
Q 019596 162 FNFEILHARWAMLGALGALVPEVLDMV 188 (338)
Q Consensus 162 ReAELkHGR~AMLA~vG~lv~Ell~~~ 188 (338)
..+|..|||+||+|++-.+..|+++.-
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq 29 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQ 29 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCC
Confidence 369999999999999999999997643
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.36 E-value=0.0077 Score=57.16 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=26.4
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhhccCcc
Q 019596 162 FNFEILHARWAMLGALGALVPEVLDMVGAF 191 (338)
Q Consensus 162 ReAELkHGR~AMLA~vG~lv~Ell~~~G~~ 191 (338)
.++|+.|||+||+|++-.++.|+++.-|.+
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 479999999999999999999998766643
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=92.00 E-value=0.099 Score=47.94 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhhhhhhhhh-ccCcc
Q 019596 157 AFQKYFNFEILHARWAMLGALGALVPEVLD-MVGAF 191 (338)
Q Consensus 157 ~~~~~ReAELkHGR~AMLA~vG~lv~Ell~-~~G~~ 191 (338)
..+..+..|+.+||+||||++-.++.|+++ .-|.+
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 344556789999999999999999999987 55644
No 35
>PLN02449 ferrochelatase
Probab=47.78 E-value=13 Score=39.26 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhccCCCchh
Q 019596 296 LAMVAWLGFYIQAAFTGKGPVQ 317 (338)
Q Consensus 296 LAMlA~lGf~~Qe~vTGkGPle 317 (338)
+||+||+.+++-++++|+||+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999973
No 36
>PF14672 LCE: Late cornified envelope
Probab=25.15 E-value=33 Score=28.03 Aligned_cols=10 Identities=90% Similarity=1.893 Sum_probs=6.6
Q ss_pred ccccCCCCCc
Q 019596 18 SCCSSSSGGC 27 (338)
Q Consensus 18 ~~~~~~~~~~ 27 (338)
+||.++||||
T Consensus 23 sCC~~ssGgC 32 (83)
T PF14672_consen 23 SCCGSSSGGC 32 (83)
T ss_pred ccccCCCCCc
Confidence 6777666666
No 37
>PHA00649 hypothetical protein
Probab=24.99 E-value=89 Score=25.08 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhhhh-------HHHHHhhhhhhhhh
Q 019596 153 KDPMAFQKYFNFEILHAR-------WAMLGALGALVPEV 184 (338)
Q Consensus 153 ~dpe~~~~~ReAELkHGR-------~AMLA~vG~lv~El 184 (338)
.+|+..+.|| +.+.||| -.||+++|.++..+
T Consensus 31 ~~P~~VEEFr-~D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 31 DVPEQVEEFR-EDLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3777777777 4678887 36899999888776
Done!