Query 019596
Match_columns 338
No_of_seqs 242 out of 1142
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 1.5E-67 5.1E-72 490.1 19.5 218 109-336 9-226 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.7E-62 5.8E-67 457.5 9.5 195 115-335 5-242 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 9.3E-60 3.2E-64 445.5 -1.0 201 115-337 58-268 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 9.1E-59 3.1E-63 440.1 3.9 209 115-337 50-275 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 4.1E-59 1.4E-63 437.7 -0.9 196 114-336 45-249 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 7.7E-55 2.6E-59 406.5 6.6 193 120-336 44-238 (241)
7 2bhw_A Chlorophyll A-B binding 99.4 1.5E-13 5.2E-18 127.6 6.6 49 264-312 39-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 1.4E-14 5E-19 135.9 -0.7 53 264-316 69-121 (251)
9 3pl9_A Chlorophyll A-B binding 99.4 2.4E-13 8.2E-18 126.9 5.0 51 139-190 172-222 (243)
10 2wsc_2 LHCA2, type II chloroph 99.4 4.3E-14 1.5E-18 133.8 -0.2 53 264-316 80-132 (269)
11 2wsc_3 LHCA3, type II chloroph 99.3 3.1E-13 1.1E-17 128.4 2.0 55 136-190 199-253 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 5.6E-13 1.9E-17 124.4 0.2 49 264-312 61-109 (241)
13 3nrt_A Putative ryanodine rece 21.5 58 0.002 26.1 2.8 23 154-176 23-47 (103)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=1.5e-67 Score=490.10 Aligned_cols=218 Identities=51% Similarity=0.907 Sum_probs=194.6
Q ss_pred hhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcc
Q 019596 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188 (338)
Q Consensus 109 ~~~~~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~ 188 (338)
.+.+.+.||+++|++||||++.++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++..
T Consensus 9 ~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~ 88 (232)
T 2bhw_A 9 VASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRN 88 (232)
T ss_dssp -CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccC
Confidence 34457889999999999998778999999999999999999999999999999999999999999999999999999887
Q ss_pred CccccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCC
Q 019596 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 268 (338)
Q Consensus 189 G~~~f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg 268 (338)
| ++|+++.||++|...+++..++|+++|.+. +.|.+.+++++|+++|+.+|.+|+.+ ++.++ ..|..||||
T Consensus 89 G-~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~--~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g~--~~d~~~Pg~ 159 (232)
T 2bhw_A 89 G-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLV--HAQSILAIWATQVILMGAVEGYRIAG----GPLGE--VVDPLYPGG 159 (232)
T ss_dssp T-CCCSCCSGGGSGGGGGSTTCEEGGGCTTSE--EECCHHHHHHHHHHHHHHHHHHHHHE----ETTEE--CSSSSCCCT
T ss_pred C-cCCcccccccccchhccccchhcccCcchh--hHHHHHHHHHHHHHHHHHHHHHhhcc----Ccccc--cccccCCCc
Confidence 7 578889999999877776678898888643 45677888999999998899998865 12222 246679999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (338)
Q Consensus 269 ~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~ 336 (338)
+ |||||+.+|+++++++|++|||||||||+|++|+++|+++||+||++||.+|++||+|||+++++.
T Consensus 160 ~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~ 226 (232)
T 2bhw_A 160 S-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT 226 (232)
T ss_dssp T-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTT
T ss_pred c-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHH
Confidence 7 999999999999999999999999999999999999999999999999999999999999999874
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.7e-62 Score=457.49 Aligned_cols=195 Identities=42% Similarity=0.700 Sum_probs=133.7
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHH-------------------------------------
Q 019596 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA------------------------------------- 157 (338)
Q Consensus 115 ~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~------------------------------------- 157 (338)
.|++++|++|+|+ .++|+|||||+|||||||||||++|||.
T Consensus 5 ~~~~~~r~~w~pg--~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYPG--AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC--CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 5777899999986 4599999999999999999999999873
Q ss_pred ------HHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHH
Q 019596 158 ------FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231 (338)
Q Consensus 158 ------~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~ 231 (338)
++||||+|||||||||||++|+++||+++ | ..||++|...+.+ .++|++.|.. +.+.++.
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g------~~W~~aG~~~~~~-g~~y~g~p~~-----~~i~~l~ 148 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--G------ITWQDAGKVELIE-GSSYLGQPLP-----FSMTTLI 148 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------CCTTTHHHHHHHS-CEEETTEEEC-----CCHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--C------ccccccccccccc-ccccccCccc-----hhhHHHH
Confidence 88999999999999999999999999974 2 2588888765532 4678776542 3466788
Q ss_pred HHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc
Q 019596 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311 (338)
Q Consensus 232 ~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vT 311 (338)
++|+++|+.+|.+|+.+. + +.+..||||+ |||||+++|+++++++|++|||||||||+||+|+++|+++|
T Consensus 149 ~~qv~lmG~~E~~R~~~~---~------~~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vt 218 (243)
T 3pl9_A 149 WIEVLVIGYIEFQRNAEL---D------TEKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVT 218 (243)
T ss_dssp HHHHHHHHHHHHHHHSCC---C------TTTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc---C------CccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 999999999999998763 1 2345799997 99999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhcCCcchhHHHhh
Q 019596 312 GKGPVQNLLDHISDPLHNNLLSMV 335 (338)
Q Consensus 312 GkGPlenL~~hladP~~~N~~~~~ 335 (338)
|+||++||.+|++||+||||++++
T Consensus 219 G~Gpl~~l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 219 GKGPLNNWVTHLSDPLHTTILDRF 242 (243)
T ss_dssp SSCHHHHHHHHHHCSGGGSTTTTT
T ss_pred CCChHHHHHHHhcCcchhhhhhhc
Confidence 999999999999999999999986
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=9.3e-60 Score=445.53 Aligned_cols=201 Identities=37% Similarity=0.726 Sum_probs=136.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccccC
Q 019596 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194 (338)
Q Consensus 115 ~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f~ 194 (338)
.+|+++|++|||+ .++|+||||++||||||||+||++||++++||||+|||||||||||++|+++||+++..|.+ .
T Consensus 58 ~~~~~~r~~wlpg--~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~--~ 133 (269)
T 2wsc_2 58 TVAEPDRPLWFPG--STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL--N 133 (269)
T ss_dssp --------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS--S
T ss_pred cccCCCcccccCC--CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc--c
Confidence 5799999999986 45999999999999999999999999999999999999999999999999999999887754 3
Q ss_pred cchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCc--------cCCCCCCCC
Q 019596 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI--------FLPGDINYP 266 (338)
Q Consensus 195 ~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~--------~~pGD~~yP 266 (338)
.|.||++|.. +|+..+ ..++++|+++|+.+|.+|+.++...+..+. ...+|..||
T Consensus 134 ~p~w~~aG~~-------~~~~~~----------~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~P 196 (269)
T 2wsc_2 134 TPSWYTAGEQ-------EYFTDT----------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYP 196 (269)
T ss_dssp CCCCCSTTSS-------SSCCCT----------TSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCT
T ss_pred Cccccccchh-------hhhcch----------HHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCC
Confidence 5678876643 233322 124577888888889999876543222111 113567899
Q ss_pred CCCCCCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhh-hhhcCCcchhHHHhhhc
Q 019596 267 GGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL-DHISDPLHNNLLSMVKS 337 (338)
Q Consensus 267 Gg~gFDPLgL~k-dpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~-~hladP~~~N~~~~~~~ 337 (338)
||++||||||.+ ||++++++|.+|||||||||+||+|+++|+++||+||++||. +||+|| ||||+++++.
T Consensus 197 G~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 197 GGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred CCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 998999999985 788899999999999999999999999999999999999999 999999 9999998753
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=9.1e-59 Score=440.12 Aligned_cols=209 Identities=42% Similarity=0.732 Sum_probs=116.6
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHH------HHHHHHHHhhhhHHHHHhhhhhhhhhhhcc
Q 019596 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAF------QKYFNFEILHARWAMLGALGALVPEVLDMV 188 (338)
Q Consensus 115 ~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~------~~~ReAELkHGR~AMLA~vG~lv~Ell~~~ 188 (338)
..|+++|++|||. .++|+||||++||||||||||| +|++++ +|||++|||||||||||++|++++|+++..
T Consensus 50 ~~~g~~R~~wlP~--~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~ 126 (276)
T 2wsc_3 50 VKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126 (276)
T ss_dssp --------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSC
T ss_pred cccCCCccccCCC--CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccc
Confidence 3499999999964 4699999999999999999999 588999 999999999999999999999999999877
Q ss_pred CccccCcc-hhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCc----------
Q 019596 189 GAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI---------- 257 (338)
Q Consensus 189 G~~~f~~p-~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~---------- 257 (338)
|.+....+ .|++.|.....| ..+|++.+. .+.++|+++|+.+|.+|+.++...+..+.
T Consensus 127 g~~~~~~p~~w~~~g~ip~aG-~~~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~ 195 (276)
T 2wsc_3 127 GLIPQETALPWFRTGFIPPAG-TYNYWADSY----------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGL 195 (276)
T ss_dssp CCCCCSSCCSSSSCCCC------CCCSCCCC----------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCC
T ss_pred ccccccCcchhhhhhcccchh-HHHHhccch----------HHHHHHHHHHHHHHHhhhcccccCCcccccccccccccc
Confidence 75422223 498876643333 345665442 24577888888899999876543222111
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhhc
Q 019596 258 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 337 (338)
Q Consensus 258 ~~pGD~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~~ 337 (338)
...+|..||||++||||||.+|+++++++|++|||||||||+||+|+++|+++||+||++||.+|++||+|||+++++.+
T Consensus 196 ~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 196 GGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp CCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred cccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 11346789999889999999988889999999999999999999999999999999999999999999999999999753
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=4.1e-59 Score=437.72 Aligned_cols=196 Identities=41% Similarity=0.752 Sum_probs=128.9
Q ss_pred CccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccc
Q 019596 114 SLWYGE-ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (338)
Q Consensus 114 ~~wy~~-~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~ 192 (338)
..||++ +|++|+|+ .++|+||||++|||+||||+||++|+++++|||++|||||||||||++|++++|+++..|.+
T Consensus 45 ~~~~~~~~r~~~~pg--~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~- 121 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG--LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII- 121 (251)
T ss_dssp --------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS-
T ss_pred ccccCcchhhhccCC--CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc-
Confidence 358999 89999986 45999999999999999999999999999999999999999999999999999998877754
Q ss_pred cCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCc-------c-CCCCCC
Q 019596 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI-------F-LPGDIN 264 (338)
Q Consensus 193 f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~-------~-~pGD~~ 264 (338)
..|.||++|.. +|++.+. .++++|+++|+.+|.+|+.++...++.+. . ..+|..
T Consensus 122 -~~p~w~~aG~~-------~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~ 183 (251)
T 2wsc_4 122 -NVPKWYAAGKE-------EYFASSS----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 183 (251)
T ss_dssp -CCCCCSCCCSS-------SCSSCSS----------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHH
T ss_pred -CCccccccchH-------hhhccch----------HHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccc
Confidence 34678876643 3444331 13466888888889998876433222210 0 112457
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (338)
Q Consensus 265 yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~ 336 (338)
||||+ ||||++.+ ++++|+|||||||| ||||+||++|+++||++|++||.+|++||+|||+++++.
T Consensus 184 yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 184 YPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp SSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred CCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 99997 99999976 67899999999999 999999999999999999999999999999999999875
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=7.7e-55 Score=406.50 Aligned_cols=193 Identities=43% Similarity=0.740 Sum_probs=138.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCccccCcchhh
Q 019596 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199 (338)
Q Consensus 120 ~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f~~p~W~ 199 (338)
.|+.|+|.. ++|+||||++|||+||||+||++|+++++||||+|||||||||||++|+++||+++. +.|+
T Consensus 44 m~~~w~P~~--~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~~~~ 113 (241)
T 2wsc_1 44 MAAHWMPGE--PRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------GNWV 113 (241)
T ss_dssp -------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C---
T ss_pred cccccCCCC--CCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------Cccc
Confidence 355677654 489999999999999999999999999999999999999999999999999998643 2355
Q ss_pred hhcc-cccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCCC
Q 019596 200 RVGY-SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278 (338)
Q Consensus 200 ~aG~-~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~k 278 (338)
+++. ..+++...+|++.|. .++.++.+.++|+++|+.+|.+|+.+. .+.+..|||| .|||||+.+
T Consensus 114 ~a~~~~~~~~g~a~~~~~~~----~~~~~~~i~~iq~l~ig~~E~~r~~~~---------~~~~~~yPgg-~fDPlgl~~ 179 (241)
T 2wsc_1 114 KAQEWAALPGGQATYLGNPV----PWGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYSK 179 (241)
T ss_dssp --CCCCSCSSCSSCCSSSCS----SSSSHHHHHHHHHHHTHHHHHHHTSCC---------SSCCSSSCSC-CSCSSSCSC
T ss_pred cccchhccCCcchhhhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCCCCCCC-ccccccccc
Confidence 4432 223444445665542 134567788899998888999886531 1235579999 699999999
Q ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (338)
Q Consensus 279 dpe~~~~lk~kELKNGRLAMlA~lGf~~Qe-~vTGkGPlenL~~hladP~~~N~~~~~~ 336 (338)
|+++++++|++|||||||||+|++|+++|+ ++||+||++||.+|++||+|||+++++.
T Consensus 180 ~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~ 238 (241)
T 2wsc_1 180 DPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 (241)
T ss_dssp SSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC--------
T ss_pred chhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeec
Confidence 999999999999999999999999999999 6899999999999999999999999864
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.42 E-value=1.5e-13 Score=127.58 Aligned_cols=49 Identities=29% Similarity=0.454 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccC
Q 019596 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312 (338)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTG 312 (338)
.+|||++||||||++|+++++++|..||||||+||+|++|+++|++++.
T Consensus 39 ~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 39 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 5799999999999999999999999999999999999999999999764
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.41 E-value=1.4e-14 Score=135.85 Aligned_cols=53 Identities=36% Similarity=0.612 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 019596 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (338)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPl 316 (338)
.+|||++||||||++||+++++++.+||||||+||+|++|+++||++|+.|++
T Consensus 69 ~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999999999999999999999999999998876
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.37 E-value=2.4e-13 Score=126.91 Aligned_cols=51 Identities=39% Similarity=0.466 Sum_probs=47.7
Q ss_pred CCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCc
Q 019596 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190 (338)
Q Consensus 139 slpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~ 190 (338)
.+|||+ |||+||++|+++++++|.+||||||+||+|++|+++||+++..|.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gp 222 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGP 222 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCh
Confidence 589999 999999999999999999999999999999999999999876653
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.37 E-value=4.3e-14 Score=133.79 Aligned_cols=53 Identities=32% Similarity=0.476 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 019596 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (338)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPl 316 (338)
.+|||++||||||++||++++++|.+||||||+||+|++|+++|+++++.|.+
T Consensus 80 ~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp --------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 57899899999999999999999999999999999999999999999987654
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.31 E-value=3.1e-13 Score=128.35 Aligned_cols=55 Identities=29% Similarity=0.373 Sum_probs=44.7
Q ss_pred CCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCc
Q 019596 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190 (338)
Q Consensus 136 LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~ 190 (338)
.|..+|||++|||+||++|+++++++|++||||||+||||++|+++||+++..|.
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~ 253 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGP 253 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCC
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCh
Confidence 3556999999999999988888999999999999999999999999999875553
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.25 E-value=5.6e-13 Score=124.42 Aligned_cols=49 Identities=35% Similarity=0.483 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccC
Q 019596 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312 (338)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTG 312 (338)
.+|||++||||||++|+++++++|..||||||+||+|++|+++|++++.
T Consensus 61 ~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred CCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 5799999999999999999999999999999999999999999999753
No 13
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron}
Probab=21.52 E-value=58 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=16.1
Q ss_pred CHHHHHHHHH--HHHhhhhHHHHHh
Q 019596 154 DPMAFQKYFN--FEILHARWAMLGA 176 (338)
Q Consensus 154 dpe~~~~~Re--AELkHGR~AMLA~ 176 (338)
-|..+...+| ||..|.||||==+
T Consensus 23 L~~~le~lvE~LAen~H~~Wa~~r~ 47 (103)
T 3nrt_A 23 LPESLIQLSERIAENVHEVWAKARI 47 (103)
T ss_dssp CCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554 8999999998554
Done!