BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019598
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFF--YSHPEE 59
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +ELHG V
Sbjct: 60 FYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNV 119
Query: 230 YTVVCLDC 237
C+ C
Sbjct: 120 EEYYCVRC 127
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 41/172 (23%)
Query: 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYS----------SGFK--PIT 157
++I + + S +V TGAGIS E GIP +R +G + SGFK P
Sbjct: 3 DEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRA 62
Query: 158 HQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHR 217
+F + A+PNPAH+A+A LE+ G + +ITQN+D LH R
Sbjct: 63 FWEFSMEMKDK--------------LFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQR 108
Query: 218 AGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268
AGS LELHG++ + CLDC ++ W+E +E + G
Sbjct: 109 AGSRRVLELHGSMDKLDCLDCHETY--------------DWSEFVEDFNKGE 146
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSF 241
C C SF
Sbjct: 123 RCTSCNNSF 131
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSF 241
C C SF
Sbjct: 123 RCTSCNNSF 131
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 15 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 73
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 74 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 133
Query: 233 VCLDCGFSF 241
C C SF
Sbjct: 134 RCTSCNNSF 142
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSF 241
C C SF
Sbjct: 123 RCTSCNNSF 131
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +EL+G V
Sbjct: 62 RFAKEGIFP--MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYGNV 119
Query: 230 YTVVCLDC 237
C+ C
Sbjct: 120 EEYYCVRC 127
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG++ E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSF 241
C C SF
Sbjct: 123 RCTSCNNSF 131
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +EL G V
Sbjct: 62 RFAKEGIFP--MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELAGNV 119
Query: 230 YTVVCLDC 237
C+ C
Sbjct: 120 EEYYCVRC 127
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN A+ A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSF 241
C C SF
Sbjct: 123 RCTSCNNSF 131
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 30/166 (18%)
Query: 88 APASPKVLRDKKAVPDA-DPPSI--EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRS 144
A SP + K +P+ DPP + +L + S+ ++ TGAGIST GIPD+R
Sbjct: 7 AGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRG 66
Query: 145 PNGAYS---SGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAG 201
P+G ++ G P F +A+P H AL LE+ G
Sbjct: 67 PHGVWTMEERGLAP---------------------KFDTTFESARPTQTHMALVQLERVG 105
Query: 202 RIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCGFSFCRD 244
+ +++QNVD LH R+G ELHG ++ C C + RD
Sbjct: 106 LLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRD 151
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 30/163 (18%)
Query: 91 SPKVLRDKKAVPDA-DPPSI--EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147
SP + K +P+ DPP + +L + S+ ++ TGAGIST GIPD+R P+G
Sbjct: 10 SPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHG 69
Query: 148 AYS---SGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRID 204
++ G P +F F +A+P H AL LE+ G +
Sbjct: 70 VWTMEERGLAP----KF-----------------DTTFESARPTQTHMALVQLERVGLLR 108
Query: 205 CMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCGFSFCRD 244
+++QNVD LH R+G ELHG ++ C C + RD
Sbjct: 109 FLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRD 151
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 34/203 (16%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 10 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 68
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 69 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 128
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 129 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 168
Query: 292 WEEDFHIPTCQK--CNGVLKPDV 312
+P C++ C G+L+P V
Sbjct: 169 ------LPRCEEAGCGGLLRPHV 185
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 34/203 (16%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 16 KFFAKAKHIVIISGAGVSAESGVPTFRGAGG-YWRKWQAQDLATPLAFAHNPSRVWEFYH 74
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 75 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 134
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 135 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 174
Query: 292 WEEDFHIPTCQK--CNGVLKPDV 312
+P C++ C G+L+P V
Sbjct: 175 ------LPRCEEAGCGGLLRPHV 191
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 34/203 (16%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 18 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 76
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 77 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 136
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 137 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 176
Query: 292 WEEDFHIPTCQK--CNGVLKPDV 312
+P C++ C G+L+P V
Sbjct: 177 ------LPRCEEAGCGGLLRPHV 193
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 34/203 (16%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 14 KFFAKAKHIVIISGAGVSAESGVPTFRGAGG-YWRKWQAQDLATPLAFAHNPSRVWEFYH 72
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 73 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 132
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 133 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 172
Query: 292 WEEDFHIPTCQK--CNGVLKPDV 312
+P C++ C G+L+P V
Sbjct: 173 ------LPRCEEAGCGGLLRPHV 189
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 34/203 (16%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 14 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 72
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 73 YRREVXGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 132
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 133 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 172
Query: 292 WEEDFHIPTCQK--CNGVLKPDV 312
+P C++ C G+L+P V
Sbjct: 173 ------LPRCEEAGCGGLLRPHV 189
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXX 164
D SI + +L + ++ LTG+G S E IP +R + + S + P +
Sbjct: 4 DTQSI-TLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGF 62
Query: 165 XXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-L 223
+ + N H AL++LE G + ++TQNVD LH +G+ +
Sbjct: 63 WKYPEKIWEVIRDISSDY-EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVI 121
Query: 224 ELHGTVYTVVCLDC 237
LHG V+ VC C
Sbjct: 122 SLHGNVFEAVCCTC 135
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXX 164
D SI + +L + ++ LTG+G S E IP +R + + S + P +
Sbjct: 29 DTQSI-TLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGF 87
Query: 165 XXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-L 223
+ + N H AL++LE G + ++TQNVD LH +G+ +
Sbjct: 88 WKYPEKIWEVIRDISSDY-EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVI 146
Query: 224 ELHGTVYTVVCLDC 237
LHG V+ VC C
Sbjct: 147 SLHGNVFEAVCCTC 160
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 124 KLIVLTGAGISTECGIPDYRSPNGAYSS----------GFK--PITHQQFVXXXXXXXXX 171
+++VLTGAGIS E GI +R+ +G + GF P Q F
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQ 62
Query: 172 XXXXXXXXXXFMAAQPNPAHFALASLEKA-GRIDCMITQNVDRLHHRAG-SNPLELHGTV 229
QPN AH ALA L+ A G ++TQN+D LH RAG +N + +HG +
Sbjct: 63 PEI-----------QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL 111
Query: 230 YTVVCLDCG 238
V C G
Sbjct: 112 LKVRCSQSG 120
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSS---GFKPITHQQFVXX 164
+IED +L Q K+IVLTGAG+S CGIPD+RS +G Y+ F + Q +
Sbjct: 5 TIEDAVKLLQ---ECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFD 61
Query: 165 XXXXXXXXXXXXXXXXXFMAA--QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG-SN 221
QP+ H +A +K G++ TQN+D L AG
Sbjct: 62 IEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQR 121
Query: 222 PLELHGTVYTVVCLDCGF 239
++ HG+ T CL C +
Sbjct: 122 IIQCHGSFATASCLICKY 139
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 77/213 (36%), Gaps = 53/213 (24%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 10 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 68
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 69 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 128
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 129 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 161
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDV 312
R +P C C GV+KPD+
Sbjct: 162 R-----------------VPRCPVCTGVVKPDI 177
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 77/213 (36%), Gaps = 53/213 (24%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 9 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 67
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 68 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 127
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 128 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 160
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDV 312
R +P C C GV+KPD+
Sbjct: 161 R-----------------VPRCPVCTGVVKPDI 176
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 77/213 (36%), Gaps = 53/213 (24%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 3 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 61
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 62 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 121
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 122 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 154
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDV 312
R +P C C GV+KPD+
Sbjct: 155 R-----------------VPRCPVCTGVVKPDI 170
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQ-----QFVXXXX 166
I+ Q + K++VLTGAG+ST GIPD+RS G YS I H Q V
Sbjct: 174 IDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK----IKHLGLDDPQDVFNYN 229
Query: 167 XXXXXXXXXXXXXXXFMAAQP--NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-- 222
+ + +P H + L+ G++ TQN+D L AG +
Sbjct: 230 IFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDK 289
Query: 223 -LELHGTVYTVVCLDCGFSFCRDLFQDQVKAL 253
++ HG+ T C+ C ++ + ++++ L
Sbjct: 290 LVQCHGSFATATCVTCHWNLPGERIFNKIRNL 321
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQ-----QFVXXXX 166
I+ Q + K++VLTGAG+ST GIPD+RS G YS I H Q V
Sbjct: 36 IDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK----IKHLGLDDPQDVFNYN 91
Query: 167 XXXXXXXXXXXXXXXFMAAQP--NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-- 222
+ + +P H + L+ G++ TQN+D L AG +
Sbjct: 92 IFXHDPSVFYNIANXVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDK 151
Query: 223 -LELHGTVYTVVCLDCGFSFCRDLFQDQVKAL 253
++ HG+ T C+ C ++ + ++++ L
Sbjct: 152 LVQCHGSFATATCVTCHWNLPGERIFNKIRNL 183
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 20 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 79
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 80 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 139
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 140 IGCGKVYPPQVFKSKL 155
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 27 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 86
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 87 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 146
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 147 IGCGKVYPPQVFKSKL 162
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 38 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 97
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 98 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 157
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 158 IGCGKVYPPQVFKSKL 173
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 30 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 89
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 90 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 149
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 150 IGCGKVYPPQVFKSKL 165
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 28 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 87
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 88 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 147
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 148 IGCGKVYPPQVFKSKL 163
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 38 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 97
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN D L +AG +E HG+ C
Sbjct: 98 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHC 157
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 158 IGCGKVYPPQVFKSKL 173
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYSSGFK---PITHQQ 160
D ++E + + Q + ++I L GAGIST GIPD+RSP+ G Y + K P
Sbjct: 27 DELTLEGVARYMQS-ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAI 85
Query: 161 FVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG- 219
F +P H+ + L+ G + TQN+D L AG
Sbjct: 86 FEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGL 145
Query: 220 --SNPLELHGTVYTVVCL 235
+ +E HGT YT C+
Sbjct: 146 EQEDLVEAHGTFYTSHCV 163
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYSSGFK---PITHQQ 160
D ++E + + Q + ++I L GAGIST GIPD+RSP+ G Y + K P
Sbjct: 27 DELTLEGVARYMQS-ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAI 85
Query: 161 FVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG- 219
F +P H+ + L+ G + TQN+D L AG
Sbjct: 86 FEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGL 145
Query: 220 --SNPLELHGTVYTVVCL 235
+ +E HGT YT C+
Sbjct: 146 EQEDLVEAHGTFYTSHCV 163
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 200 AGRIDCMITQNVDRLHH-------RAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKA 252
R+ C+IT+N + + H R LE G+V + D F F R+ ++++V+
Sbjct: 250 GARVGCLITRNEELISHAXKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVET 309
Query: 253 LNPKWAE 259
+ K E
Sbjct: 310 VLKKLEE 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,847,109
Number of Sequences: 62578
Number of extensions: 377754
Number of successful extensions: 857
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 73
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)