Query 019598
Match_columns 338
No_of_seqs 206 out of 1349
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2683 Sirtuin 4 and related 100.0 2.7E-59 5.9E-64 428.6 18.1 240 81-335 6-248 (305)
2 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 1.6E-51 3.5E-56 389.0 19.2 206 115-336 1-207 (260)
3 PRK05333 NAD-dependent deacety 100.0 7.5E-50 1.6E-54 382.0 19.6 211 109-336 6-217 (285)
4 COG0846 SIR2 NAD-dependent pro 100.0 2.9E-47 6.3E-52 357.5 17.5 179 112-336 2-185 (250)
5 PTZ00409 Sir2 (Silent Informat 100.0 1.4E-46 3.1E-51 357.3 14.2 183 109-336 15-202 (271)
6 PRK14138 NAD-dependent deacety 100.0 1E-45 2.2E-50 346.6 17.6 177 113-336 2-181 (244)
7 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 1.6E-45 3.6E-50 340.5 13.3 170 119-336 1-174 (222)
8 PRK00481 NAD-dependent deacety 100.0 5E-45 1.1E-49 340.8 15.7 175 111-336 2-180 (242)
9 cd01411 SIR2H SIR2H: Uncharact 100.0 1.6E-44 3.4E-49 334.6 13.5 168 115-336 1-174 (225)
10 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 2.7E-44 5.9E-49 335.2 13.7 166 123-336 1-178 (235)
11 cd01407 SIR2-fam SIR2 family o 100.0 8.5E-44 1.9E-48 327.6 14.7 165 123-336 1-170 (218)
12 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 7.4E-44 1.6E-48 326.4 13.8 155 123-336 1-158 (206)
13 PTZ00410 NAD-dependent SIR2; P 100.0 4.6E-43 1E-47 342.0 15.3 179 110-336 15-208 (349)
14 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 1.1E-42 2.4E-47 321.0 13.5 163 123-336 1-167 (224)
15 PTZ00408 NAD-dependent deacety 100.0 2.3E-42 4.9E-47 323.7 13.0 165 120-336 2-175 (242)
16 PF02146 SIR2: Sir2 family; I 100.0 3E-42 6.5E-47 307.7 8.0 160 130-336 1-166 (178)
17 cd00296 SIR2 SIR2 superfamily 100.0 3.4E-38 7.3E-43 288.9 14.5 163 123-335 1-171 (222)
18 KOG2684 Sirtuin 5 and related 100.0 8.7E-37 1.9E-41 298.6 13.6 176 106-326 72-273 (412)
19 KOG2682 NAD-dependent histone 100.0 4.5E-33 9.7E-38 256.2 8.3 172 111-334 23-209 (314)
20 KOG1905 Class IV sirtuins (SIR 100.0 2.6E-29 5.5E-34 237.4 5.4 174 109-336 42-219 (353)
21 cd01406 SIR2-like Sir2-like: P 99.0 9E-10 2E-14 102.6 5.9 111 123-234 1-151 (242)
22 PF07295 DUF1451: Protein of u 90.4 0.17 3.8E-06 44.5 2.1 13 229-241 110-122 (146)
23 PRK11032 hypothetical protein; 90.1 0.19 4.1E-06 44.9 2.1 14 229-242 122-135 (160)
24 PF13289 SIR2_2: SIR2-like dom 85.4 0.6 1.3E-05 38.9 2.3 14 205-218 2-15 (143)
25 smart00834 CxxC_CXXC_SSSS Puta 83.7 0.74 1.6E-05 30.9 1.7 12 298-309 26-37 (41)
26 PF09845 DUF2072: Zn-ribbon co 81.2 0.74 1.6E-05 39.8 1.1 11 232-242 2-12 (131)
27 TIGR02098 MJ0042_CXXC MJ0042 f 77.6 1.5 3.2E-05 29.3 1.5 12 298-309 25-36 (38)
28 PF14353 CpXC: CpXC protein 76.8 0.75 1.6E-05 38.9 -0.2 14 231-244 1-14 (128)
29 PF09723 Zn-ribbon_8: Zinc rib 75.3 1.7 3.7E-05 30.0 1.3 13 229-241 3-15 (42)
30 COG3364 Zn-ribbon containing p 74.9 1.1 2.5E-05 37.2 0.5 11 232-242 3-13 (112)
31 PF02591 DUF164: Putative zinc 74.5 4.7 0.0001 29.3 3.6 23 219-245 14-36 (56)
32 PRK07591 threonine synthase; V 72.6 2.2 4.7E-05 43.4 1.9 14 229-242 16-29 (421)
33 PRK12496 hypothetical protein; 71.9 2.3 5.1E-05 37.9 1.8 25 218-242 108-138 (164)
34 COG0028 IlvB Thiamine pyrophos 70.2 9.4 0.0002 40.4 6.1 28 110-137 188-215 (550)
35 PF13717 zinc_ribbon_4: zinc-r 67.7 3.8 8.1E-05 27.5 1.6 12 231-242 2-13 (36)
36 COG1579 Zn-ribbon protein, pos 67.6 3.4 7.4E-05 39.3 1.9 20 221-244 191-210 (239)
37 TIGR02605 CxxC_CxxC_SSSS putat 66.9 3.8 8.1E-05 29.1 1.6 14 229-242 3-16 (52)
38 TIGR00373 conserved hypothetic 66.7 5 0.00011 35.6 2.7 19 224-242 102-120 (158)
39 PRK06266 transcription initiat 65.6 4.3 9.4E-05 36.7 2.2 13 298-310 136-148 (178)
40 PRK00398 rpoP DNA-directed RNA 65.0 5.1 0.00011 28.0 2.0 11 231-241 3-13 (46)
41 PRK00564 hypA hydrogenase nick 64.9 4.1 8.8E-05 34.4 1.7 19 223-241 63-81 (117)
42 cd00729 rubredoxin_SM Rubredox 64.3 6.6 0.00014 26.0 2.3 11 231-241 2-12 (34)
43 PF13719 zinc_ribbon_5: zinc-r 63.3 5 0.00011 27.0 1.6 12 231-242 2-13 (37)
44 cd00350 rubredoxin_like Rubred 63.2 7 0.00015 25.5 2.3 12 231-242 1-12 (33)
45 PF09151 DUF1936: Domain of un 60.7 4.1 8.8E-05 26.9 0.7 12 300-311 3-15 (36)
46 smart00531 TFIIE Transcription 60.5 7 0.00015 34.0 2.5 12 299-310 124-135 (147)
47 COG1198 PriA Primosomal protei 60.2 8.6 0.00019 42.1 3.6 17 224-240 428-444 (730)
48 COG1379 PHP family phosphoeste 60.0 2.5 5.4E-05 42.0 -0.5 19 225-243 240-258 (403)
49 cd00730 rubredoxin Rubredoxin; 59.9 7.5 0.00016 28.1 2.1 12 231-242 1-12 (50)
50 PF09538 FYDLN_acid: Protein o 59.8 6.3 0.00014 33.0 1.9 13 299-311 27-39 (108)
51 TIGR00354 polC DNA polymerase, 58.0 5.6 0.00012 44.5 1.7 20 224-243 1000-1024(1095)
52 PRK11788 tetratricopeptide rep 56.2 6.7 0.00014 37.9 1.8 19 298-316 368-388 (389)
53 COG1773 Rubredoxin [Energy pro 56.1 14 0.0003 27.5 2.9 13 230-242 2-14 (55)
54 PRK03824 hypA hydrogenase nick 55.5 7.1 0.00015 33.7 1.6 15 229-243 68-82 (135)
55 PF00301 Rubredoxin: Rubredoxi 55.1 9.6 0.00021 27.2 2.0 13 231-243 1-13 (47)
56 PRK08197 threonine synthase; V 54.8 6.6 0.00014 39.4 1.5 13 230-242 6-18 (394)
57 PF00205 TPP_enzyme_M: Thiamin 54.7 8.2 0.00018 32.4 1.9 25 112-136 1-25 (137)
58 PRK03681 hypA hydrogenase nick 53.5 8.7 0.00019 32.2 1.8 18 224-241 63-80 (114)
59 PRK04023 DNA polymerase II lar 52.7 7.7 0.00017 43.7 1.7 20 224-243 1025-1049(1121)
60 PF05191 ADK_lid: Adenylate ki 52.0 12 0.00026 25.2 1.9 13 231-243 1-13 (36)
61 COG3357 Predicted transcriptio 51.9 7 0.00015 31.9 0.9 13 230-242 57-69 (97)
62 PRK12380 hydrogenase nickel in 51.9 8.4 0.00018 32.3 1.4 19 223-241 62-80 (113)
63 PRK14714 DNA polymerase II lar 51.3 8.2 0.00018 44.5 1.7 20 224-243 1241-1265(1337)
64 TIGR00100 hypA hydrogenase nic 49.7 9.6 0.00021 32.0 1.5 13 229-241 68-80 (115)
65 PF01155 HypA: Hydrogenase exp 49.0 6.7 0.00015 32.7 0.4 20 223-242 62-81 (113)
66 PF13240 zinc_ribbon_2: zinc-r 48.0 9 0.0002 23.2 0.8 6 301-306 16-21 (23)
67 PLN02569 threonine synthase 46.2 12 0.00025 39.2 1.7 12 231-242 49-60 (484)
68 COG2331 Uncharacterized protei 43.7 10 0.00023 30.0 0.7 21 298-318 33-58 (82)
69 PF01475 FUR: Ferric uptake re 43.4 19 0.00041 29.6 2.3 50 187-244 42-93 (120)
70 TIGR00853 pts-lac PTS system, 43.1 11 0.00025 30.4 0.9 16 121-136 2-17 (95)
71 TIGR02300 FYDLN_acid conserved 42.2 18 0.0004 31.2 2.0 14 298-311 26-39 (129)
72 PRK14715 DNA polymerase II lar 41.2 15 0.00032 42.8 1.7 19 224-243 1530-1553(1627)
73 PF04475 DUF555: Protein of un 39.6 18 0.00039 30.0 1.6 22 298-319 47-68 (102)
74 TIGR02720 pyruv_oxi_spxB pyruv 39.3 36 0.00078 35.9 4.2 29 106-134 184-212 (575)
75 COG4588 AcfC Accessory coloniz 38.6 15 0.00032 34.6 1.0 56 90-147 95-150 (252)
76 COG1996 RPC10 DNA-directed RNA 38.5 21 0.00045 25.9 1.5 11 231-241 6-16 (49)
77 PRK09590 celB cellobiose phosp 38.5 14 0.0003 30.6 0.8 14 123-136 2-15 (104)
78 PF02150 RNA_POL_M_15KD: RNA p 38.4 13 0.00029 24.7 0.5 12 300-311 3-14 (35)
79 PRK07524 hypothetical protein; 38.3 32 0.00069 35.8 3.5 28 107-134 186-213 (535)
80 COG2051 RPS27A Ribosomal prote 38.2 12 0.00026 28.8 0.3 17 224-240 12-28 (67)
81 PF02302 PTS_IIB: PTS system, 37.9 16 0.00035 28.2 1.0 13 124-136 1-13 (90)
82 smart00659 RPOLCX RNA polymera 37.8 25 0.00054 24.7 1.8 10 298-307 19-28 (44)
83 PRK08273 thiamine pyrophosphat 37.7 42 0.00092 35.5 4.4 28 107-134 193-220 (597)
84 cd05013 SIS_RpiR RpiR-like pro 37.3 18 0.00039 29.3 1.2 27 111-138 2-28 (139)
85 COG3962 Acetolactate synthase 37.3 21 0.00045 37.5 1.9 119 25-146 120-265 (617)
86 PRK05452 anaerobic nitric oxid 37.1 29 0.00063 36.0 3.0 21 222-242 416-436 (479)
87 COG1439 Predicted nucleic acid 37.0 20 0.00043 32.7 1.5 11 300-310 155-165 (177)
88 PRK12775 putative trifunctiona 36.9 21 0.00045 40.6 2.0 15 296-310 836-850 (1006)
89 CHL00099 ilvB acetohydroxyacid 36.8 43 0.00093 35.4 4.3 29 106-134 201-229 (585)
90 PRK07586 hypothetical protein; 36.5 43 0.00092 34.6 4.1 30 106-135 181-210 (514)
91 COG3142 CutC Uncharacterized p 36.2 36 0.00078 32.4 3.2 31 106-136 152-183 (241)
92 PRK14873 primosome assembly pr 36.1 28 0.00061 37.8 2.8 15 226-240 378-392 (665)
93 PRK03922 hypothetical protein; 36.0 22 0.00047 30.0 1.5 22 298-319 49-70 (113)
94 PF12172 DUF35_N: Rubredoxin-l 36.0 16 0.00035 24.2 0.6 14 227-240 7-20 (37)
95 PRK00945 acetyl-CoA decarbonyl 35.9 35 0.00076 30.8 3.0 23 113-135 25-47 (171)
96 PRK07789 acetolactate synthase 35.2 43 0.00094 35.6 4.0 29 107-135 216-244 (612)
97 PRK09259 putative oxalyl-CoA d 35.2 45 0.00097 35.0 4.1 28 107-134 198-225 (569)
98 PF14169 YdjO: Cold-inducible 35.1 25 0.00054 26.5 1.5 18 297-314 38-55 (59)
99 PRK06154 hypothetical protein; 35.0 48 0.001 35.0 4.3 31 106-136 198-228 (565)
100 PRK07418 acetolactate synthase 35.0 41 0.00089 35.8 3.8 29 106-134 208-236 (616)
101 TIGR02418 acolac_catab acetola 34.8 50 0.0011 34.4 4.3 29 107-135 180-208 (539)
102 COG1066 Sms Predicted ATP-depe 34.5 22 0.00048 36.7 1.6 13 230-242 6-18 (456)
103 PRK09107 acetolactate synthase 34.2 50 0.0011 35.0 4.3 29 107-135 197-225 (595)
104 cd05564 PTS_IIB_chitobiose_lic 34.0 20 0.00043 28.9 1.0 13 124-136 1-13 (96)
105 PRK06965 acetolactate synthase 33.9 45 0.00097 35.3 3.9 29 107-135 206-234 (587)
106 COG1885 Uncharacterized protei 33.9 24 0.00052 29.6 1.4 22 298-319 49-70 (115)
107 TIGR01504 glyox_carbo_lig glyo 33.6 45 0.00096 35.4 3.8 29 107-135 187-215 (588)
108 PRK07979 acetolactate synthase 33.3 47 0.001 34.9 3.9 30 107-136 191-220 (574)
109 PRK07064 hypothetical protein; 33.2 50 0.0011 34.3 4.1 29 106-134 187-215 (544)
110 TIGR03457 sulphoacet_xsc sulfo 32.0 50 0.0011 34.8 3.8 29 107-135 181-209 (579)
111 COG1440 CelA Phosphotransferas 31.9 26 0.00057 29.2 1.4 14 123-136 2-15 (102)
112 PRK08617 acetolactate synthase 31.6 57 0.0012 34.0 4.2 28 107-134 186-213 (552)
113 COG0549 ArcC Carbamate kinase 31.6 65 0.0014 31.8 4.2 46 98-150 160-205 (312)
114 PF01396 zf-C4_Topoisom: Topoi 31.6 24 0.00052 24.0 0.9 14 300-313 3-16 (39)
115 COG2176 PolC DNA polymerase II 31.5 33 0.00071 39.8 2.4 20 112-131 718-737 (1444)
116 PRK12474 hypothetical protein; 31.2 56 0.0012 33.9 4.0 28 107-134 186-213 (518)
117 TIGR00315 cdhB CO dehydrogenas 31.0 46 0.00099 29.8 2.9 22 113-134 18-39 (162)
118 PRK08327 acetolactate synthase 31.0 55 0.0012 34.4 4.0 29 107-135 205-233 (569)
119 PRK10499 PTS system N,N'-diace 31.0 23 0.00051 29.2 1.0 14 123-136 4-17 (106)
120 PRK13264 3-hydroxyanthranilate 31.0 31 0.00067 31.4 1.8 40 205-244 86-133 (177)
121 TIGR00173 menD 2-succinyl-5-en 31.0 55 0.0012 33.1 3.8 39 107-145 196-245 (432)
122 PRK07282 acetolactate synthase 30.8 55 0.0012 34.4 3.9 29 107-135 195-223 (566)
123 KOG1185 Thiamine pyrophosphate 30.8 1.2E+02 0.0026 32.1 6.1 28 109-136 204-231 (571)
124 PRK06112 acetolactate synthase 30.7 60 0.0013 34.1 4.2 28 107-134 198-225 (578)
125 PRK06725 acetolactate synthase 30.6 55 0.0012 34.5 3.8 29 107-135 199-227 (570)
126 PRK07092 benzoylformate decarb 30.5 66 0.0014 33.4 4.4 29 106-134 190-218 (530)
127 PF14803 Nudix_N_2: Nudix N-te 30.2 20 0.00044 23.8 0.4 14 300-313 2-15 (34)
128 PRK06456 acetolactate synthase 30.2 63 0.0014 33.9 4.2 28 107-134 192-219 (572)
129 PRK08978 acetolactate synthase 30.2 61 0.0013 33.8 4.1 28 107-134 181-208 (548)
130 PRK11269 glyoxylate carboligas 29.9 55 0.0012 34.6 3.7 28 107-134 188-215 (591)
131 PRK09462 fur ferric uptake reg 29.9 85 0.0018 26.9 4.3 52 184-243 49-102 (148)
132 cd07153 Fur_like Ferric uptake 29.7 55 0.0012 26.4 3.0 52 184-243 32-85 (116)
133 PRK08322 acetolactate synthase 29.6 67 0.0015 33.4 4.3 28 107-134 181-208 (547)
134 PRK08979 acetolactate synthase 29.6 56 0.0012 34.4 3.7 27 108-134 192-218 (572)
135 PLN02470 acetolactate synthase 29.6 55 0.0012 34.5 3.7 28 107-134 200-227 (585)
136 PRK00762 hypA hydrogenase nick 29.6 32 0.00069 29.3 1.5 11 230-241 69-79 (124)
137 PF10571 UPF0547: Uncharacteri 29.1 38 0.00083 21.2 1.5 10 298-307 14-23 (26)
138 PRK11823 DNA repair protein Ra 28.9 31 0.00066 35.5 1.6 12 231-242 7-18 (446)
139 PRK08527 acetolactate synthase 28.9 60 0.0013 34.0 3.8 30 107-136 188-217 (563)
140 TIGR00595 priA primosomal prot 28.9 31 0.00067 36.1 1.6 15 226-240 208-222 (505)
141 PF08274 PhnA_Zn_Ribbon: PhnA 28.7 24 0.00051 23.0 0.5 10 298-307 2-11 (30)
142 PRK05858 hypothetical protein; 28.6 74 0.0016 33.2 4.4 29 106-134 187-215 (542)
143 TIGR00375 conserved hypothetic 28.6 27 0.00059 35.3 1.1 16 226-241 235-250 (374)
144 PRK08199 thiamine pyrophosphat 28.3 70 0.0015 33.4 4.2 28 107-134 189-216 (557)
145 COG1675 TFA1 Transcription ini 28.3 28 0.0006 31.7 1.0 11 299-309 133-143 (176)
146 PRK08611 pyruvate oxidase; Pro 28.3 72 0.0016 33.6 4.3 28 107-134 188-215 (576)
147 PRK08155 acetolactate synthase 28.0 68 0.0015 33.6 4.0 29 107-135 196-224 (564)
148 KOG4718 Non-SMC (structural ma 27.9 39 0.00085 31.8 1.9 16 232-247 195-210 (235)
149 COG1592 Rubrerythrin [Energy p 27.4 39 0.00085 30.5 1.8 11 231-241 134-144 (166)
150 TIGR03254 oxalate_oxc oxalyl-C 27.4 61 0.0013 33.9 3.5 28 107-134 191-218 (554)
151 TIGR00118 acolac_lg acetolacta 27.2 64 0.0014 33.7 3.6 27 108-134 187-213 (558)
152 PF04574 DUF592: Protein of un 27.2 56 0.0012 29.1 2.7 20 110-129 134-153 (153)
153 PF06906 DUF1272: Protein of u 26.8 31 0.00068 25.7 0.9 12 299-310 42-53 (57)
154 COG1933 Archaeal DNA polymeras 26.8 25 0.00054 33.6 0.5 9 298-306 183-191 (253)
155 PF14419 SPOUT_MTase_2: AF2226 26.7 74 0.0016 28.7 3.4 40 98-141 95-135 (173)
156 PRK14873 primosome assembly pr 26.6 32 0.00069 37.4 1.3 22 219-240 379-401 (665)
157 PF04606 Ogr_Delta: Ogr/Delta- 26.6 32 0.0007 24.2 0.9 10 300-309 1-10 (47)
158 PRK07525 sulfoacetaldehyde ace 26.6 68 0.0015 33.9 3.7 27 108-134 186-212 (588)
159 PRK06048 acetolactate synthase 26.2 73 0.0016 33.4 3.8 29 107-135 192-220 (561)
160 PF04216 FdhE: Protein involve 26.0 41 0.0009 32.3 1.8 21 222-242 184-208 (290)
161 PRK06546 pyruvate dehydrogenas 25.9 68 0.0015 33.9 3.5 28 107-134 186-213 (578)
162 PF03604 DNA_RNApol_7kD: DNA d 25.8 58 0.0013 21.4 1.9 10 298-307 17-26 (32)
163 PRK08266 hypothetical protein; 25.8 81 0.0018 32.8 4.1 28 107-134 190-217 (542)
164 PRK06276 acetolactate synthase 25.5 77 0.0017 33.4 3.9 28 107-134 188-215 (586)
165 PRK07710 acetolactate synthase 25.2 74 0.0016 33.4 3.7 28 107-134 200-227 (571)
166 PRK00448 polC DNA polymerase I 25.0 44 0.00096 39.6 2.1 12 300-311 935-946 (1437)
167 PRK06457 pyruvate dehydrogenas 24.9 89 0.0019 32.6 4.2 25 110-134 183-207 (549)
168 PRK05580 primosome assembly pr 24.6 1.1E+02 0.0024 33.2 5.0 15 226-240 376-390 (679)
169 TIGR00595 priA primosomal prot 24.5 60 0.0013 33.9 2.8 9 299-307 254-262 (505)
170 PF07282 OrfB_Zn_ribbon: Putat 24.5 73 0.0016 23.6 2.6 24 217-240 14-37 (69)
171 PRK10310 PTS system galactitol 24.5 34 0.00073 27.5 0.8 14 124-137 4-17 (94)
172 PF09297 zf-NADH-PPase: NADH p 24.4 32 0.0007 22.1 0.5 13 299-311 4-16 (32)
173 PF06676 DUF1178: Protein of u 24.2 75 0.0016 28.2 2.9 20 298-317 32-57 (148)
174 PF10083 DUF2321: Uncharacteri 23.7 18 0.0004 32.3 -1.0 15 297-312 66-81 (158)
175 PRK06466 acetolactate synthase 23.6 82 0.0018 33.1 3.6 27 108-134 192-218 (574)
176 COG1198 PriA Primosomal protei 23.6 47 0.001 36.6 1.9 23 219-241 431-454 (730)
177 PRK09124 pyruvate dehydrogenas 23.5 79 0.0017 33.2 3.5 28 107-134 186-213 (574)
178 PF04810 zf-Sec23_Sec24: Sec23 23.4 43 0.00093 22.7 1.0 19 298-316 2-20 (40)
179 COG3809 Uncharacterized protei 23.0 52 0.0011 26.3 1.5 10 298-307 21-30 (88)
180 TIGR03037 anthran_nbaC 3-hydro 23.0 53 0.0011 29.4 1.8 40 205-244 80-127 (159)
181 PRK06882 acetolactate synthase 23.0 84 0.0018 33.0 3.6 27 108-134 192-218 (574)
182 COG1545 Predicted nucleic-acid 22.9 47 0.001 28.8 1.4 15 227-241 25-39 (140)
183 COG1571 Predicted DNA-binding 22.9 36 0.00078 35.0 0.8 14 297-310 349-362 (421)
184 PF10263 SprT-like: SprT-like 22.7 42 0.00091 28.7 1.1 15 228-242 120-134 (157)
185 PLN02573 pyruvate decarboxylas 22.6 59 0.0013 34.4 2.3 27 109-135 211-237 (578)
186 smart00661 RPOL9 RNA polymeras 22.3 41 0.00089 23.4 0.8 12 300-311 2-13 (52)
187 PRK11827 hypothetical protein; 22.3 35 0.00075 25.7 0.4 14 298-311 8-21 (60)
188 PF13248 zf-ribbon_3: zinc-rib 22.2 43 0.00094 20.6 0.8 8 300-307 18-25 (26)
189 TIGR01405 polC_Gram_pos DNA po 22.0 54 0.0012 38.2 2.0 11 300-310 710-720 (1213)
190 TIGR00416 sms DNA repair prote 21.8 49 0.0011 34.2 1.5 12 231-242 7-18 (454)
191 PRK03564 formate dehydrogenase 21.8 67 0.0015 31.7 2.4 17 226-242 207-223 (309)
192 cd05005 SIS_PHI Hexulose-6-pho 21.5 1E+02 0.0022 27.1 3.3 27 109-136 20-46 (179)
193 TIGR03127 RuMP_HxlB 6-phospho 21.4 94 0.002 27.1 3.1 26 109-135 17-42 (179)
194 cd04482 RPA2_OBF_like RPA2_OBF 21.4 43 0.00093 26.7 0.8 8 298-305 84-91 (91)
195 PRK11557 putative DNA-binding 21.4 94 0.002 29.2 3.3 28 109-137 115-142 (278)
196 COG4830 RPS26B Ribosomal prote 21.2 30 0.00064 28.8 -0.2 37 226-262 15-51 (108)
197 PRK11302 DNA-binding transcrip 21.1 87 0.0019 29.3 3.0 29 109-138 115-143 (284)
198 TIGR03393 indolpyr_decarb indo 21.0 82 0.0018 32.9 3.0 24 111-134 194-217 (539)
199 cd05567 PTS_IIB_mannitol PTS_I 21.0 49 0.0011 25.8 1.0 14 123-136 1-14 (87)
200 PF07191 zinc-ribbons_6: zinc- 20.9 59 0.0013 25.3 1.4 12 230-241 16-27 (70)
201 COG0498 ThrC Threonine synthas 20.6 61 0.0013 33.3 1.9 18 298-315 21-38 (411)
202 KOG4166 Thiamine pyrophosphate 20.5 96 0.0021 32.5 3.2 30 109-138 285-314 (675)
203 PF13005 zf-IS66: zinc-finger 20.5 59 0.0013 22.3 1.3 12 299-310 3-14 (47)
204 PRK05580 primosome assembly pr 20.4 53 0.0011 35.7 1.5 9 299-307 422-430 (679)
205 COG4019 Uncharacterized protei 20.1 1.1E+02 0.0024 26.7 3.0 23 109-131 23-45 (156)
No 1
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.7e-59 Score=428.59 Aligned_cols=240 Identities=57% Similarity=0.963 Sum_probs=223.7
Q ss_pred CCCCCCCCCCCcccccCCccccCCCCCCHHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCC-CCCC-CCCCCCCH
Q 019598 81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH 158 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~-Gly~-~~~~~~~~ 158 (338)
++++.++.| ++.++..+++|++++..+++|.+|..+|..+++++|+|||||||+|||||||+++ |+|. ..++|+++
T Consensus 6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h 83 (305)
T KOG2683|consen 6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH 83 (305)
T ss_pred ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence 567777766 6778889999999999999999999999999999999999999999999999998 9998 58999999
Q ss_pred HHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCC-eEEeecccCceecCCC
Q 019598 159 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN-PLELHGTVYTVVCLDC 237 (338)
Q Consensus 159 ~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~k-viELHGsl~~~qC~~C 237 (338)
++|..+...+++||++.|.+|.++..++||.+|++|+.||+.|++.++||||||+||.|||++ +.||||+...+.|..|
T Consensus 84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C 163 (305)
T KOG2683|consen 84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC 163 (305)
T ss_pred HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999995 9999999999999999
Q ss_pred CcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCC
Q 019598 238 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLS 317 (338)
Q Consensus 238 ~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE 317 (338)
++..+|..||++|+.+||.|.++... |+ .++||||++||.++ +..|.+|.|++|||.|||+|+||||
T Consensus 164 ~y~~~R~~~Qdrl~~~NP~fke~~~~-----~~-------~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd 230 (305)
T KOG2683|consen 164 GYIEPRQTFQDRLKYLNPGFKEAIVS-----PG-------HQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD 230 (305)
T ss_pred CcccchHHHHHHHHhcCcchhhhccC-----cc-------ccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence 99999999999999999999987542 21 37899999999988 6789999999999999999999999
Q ss_pred CCChhhHHHHhhccccCC
Q 019598 318 LIEVNSISIFFTLVPADD 335 (338)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~ 335 (338)
+++.++++.+.+-.-..|
T Consensus 231 nvn~dkv~~~~~~v~e~d 248 (305)
T KOG2683|consen 231 NVNKDKVTFCMEKVKECD 248 (305)
T ss_pred CCChHHHHHHHHHHhccC
Confidence 999999999887665544
No 2
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.6e-51 Score=389.03 Aligned_cols=206 Identities=52% Similarity=0.894 Sum_probs=178.1
Q ss_pred HHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCCCCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 019598 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFAL 194 (338)
Q Consensus 115 L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aL 194 (338)
|+++|++|++|||+||||||++||||||||++|+|...+++++++.|..++...+.||.+.+..+..+.+++||.+|++|
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~l 80 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRAL 80 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHH
Confidence 46789999999999999999999999999999999754788899999999877778888766666667789999999999
Q ss_pred HHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCC
Q 019598 195 ASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 273 (338)
Q Consensus 195 a~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~ 273 (338)
++|+++|++.+||||||||||++||+ +|+||||++..++|+.|++.++++.+...+...||.|.+...
T Consensus 81 a~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~----------- 149 (260)
T cd01409 81 AALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAA----------- 149 (260)
T ss_pred HHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhc-----------
Confidence 99999999999999999999999999 699999999999999999999988888888888888865321
Q ss_pred CcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 274 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 274 ~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
...|+++..++.+.. ....+|+||.|||+|||+||||||++|.+.++.+.+.+.+.|+
T Consensus 150 ----~~~~~~~~~~~~~~~-~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl 207 (260)
T cd01409 150 ----GQAPDGDVDLEDEQV-AGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADA 207 (260)
T ss_pred ----ccCCCcccccchhhc-ccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCE
Confidence 245666665543322 2345899999999999999999999999999999999988874
No 3
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=7.5e-50 Score=381.99 Aligned_cols=211 Identities=44% Similarity=0.751 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCCCCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn 188 (338)
..+++.|+++|+++++|||+||||||++||||||||++|+|. .++++++.+|..++..++.||.+.+..|..+.+++||
T Consensus 6 ~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pn 84 (285)
T PRK05333 6 PAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWK-RSPPITYQAFMGSDAARRRYWARSMVGWPVFGRAQPN 84 (285)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccc-cCCcccHHHHhcCchhhHHHHHHHHhhchhcccCCCC
Confidence 478889999999999999999999999999999999999997 5778888899888888889998776666667789999
Q ss_pred HHHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCC
Q 019598 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (338)
Q Consensus 189 ~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~ 267 (338)
.+|++|++|+++|++++||||||||||++||. +|+|+||++..++|++|++.+.++.+...+...+|.|.....
T Consensus 85 ~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~----- 159 (285)
T PRK05333 85 AAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA----- 159 (285)
T ss_pred HHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc-----
Confidence 99999999999999999999999999999999 799999999999999999999888777777666776654311
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 268 ~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
.+.++++++.+.... ....+|+||.|||.|||+||||||+++.+.++.+.+.+.++|.
T Consensus 160 ----------~~~~~~~~~~~~~~~-~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~Dl 217 (285)
T PRK05333 160 ----------APAPDGDADLEWAAF-DHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADA 217 (285)
T ss_pred ----------ccCCCcccccccccc-ccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCE
Confidence 133445554432211 2345899999999999999999999999999999988888774
No 4
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=2.9e-47 Score=357.52 Aligned_cols=179 Identities=39% Similarity=0.645 Sum_probs=152.5
Q ss_pred HHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCC
Q 019598 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (338)
Q Consensus 112 i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn 188 (338)
++.++++|++|++|||+|||||||+|||||||+.+|+|..+|++ ++.+.|..+ ++.||.++.........++||
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~---p~~~~~f~~~~~~~~~~a~Pn 78 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRD---PELVWDFYSERLRLLYLAQPN 78 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhC---HHHHHHHHHHHHHhhhcCCCC
Confidence 57889999999999999999999999999999999999856776 366667664 568888665555555669999
Q ss_pred HHHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCC
Q 019598 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (338)
Q Consensus 189 ~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~ 267 (338)
.+|++|++|+++|++++|||||||+||++||+ +|+||||++..++|+.|+..+..+......
T Consensus 79 ~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~----------------- 141 (250)
T COG0846 79 KAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKFI----------------- 141 (250)
T ss_pred HHHHHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeCCCcCccchhhhhhhc-----------------
Confidence 99999999999999999999999999999999 799999999999999999887644311000
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC-eeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 268 ~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG-~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....+|+||+||+ .|||+||||||.+|.+.++++++.+...|+
T Consensus 142 --------------------------~~~~~p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~ 185 (250)
T COG0846 142 --------------------------EDGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADL 185 (250)
T ss_pred --------------------------ccCCCCcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCE
Confidence 0113899999999 999999999999999999999999877764
No 5
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=357.27 Aligned_cols=183 Identities=26% Similarity=0.453 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCC-CCCCCCCCCCC---CHHHHhhchHHHHHHHHHHHHHHHhhhc
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFKPI---THQQFVRSSRARRRYWARSYAGWRRFMA 184 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~-~Gly~~~~~~~---~~~~f~~~~~~~~~~wa~~~~~~~~~~~ 184 (338)
...++.|+++|+++++|||+||||||++|||||||++ +|+|. .|++. ++..|..+ +..+|.++.. +....+
T Consensus 15 ~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~-~~~~~~~~t~~~f~~~---p~~~~~~~~~-~~~~~~ 89 (271)
T PTZ00409 15 SITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWS-KYDPKIYGTIWGFWKY---PEKIWEVIRD-ISSDYE 89 (271)
T ss_pred cccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCcccc-CCCHHHhccHHHHHHC---hHHHHHHHHH-hhhccc
Confidence 4567889999999999999999999999999999998 69997 56663 34445444 5677765433 223347
Q ss_pred CCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhh
Q 019598 185 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIES 263 (338)
Q Consensus 185 a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~ 263 (338)
++||.+|++|++|++.|++.+||||||||||++||+ +|+||||++..++|++|++.+..+.. +...++.+
T Consensus 90 a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~C~~~~~~~~~---~~~~~~~~------ 160 (271)
T PTZ00409 90 IELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKI---MLQKTSHF------ 160 (271)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCCCCCCcccCHH---HHhhhhhh------
Confidence 899999999999999999999999999999999999 69999999999999999987653321 10000000
Q ss_pred hcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 264 LDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
. ...+|+|| |||.|||+||||||++|.+.++.+.+.+++.|+
T Consensus 161 ------------------------~------~~~~P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl 202 (271)
T PTZ00409 161 ------------------------M------HQLPPECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDL 202 (271)
T ss_pred ------------------------c------cCCCCCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCE
Confidence 0 01269999 999999999999999999999999999988874
No 6
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1e-45 Score=346.59 Aligned_cols=177 Identities=32% Similarity=0.619 Sum_probs=148.3
Q ss_pred HHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCC-C-CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHH
Q 019598 113 NQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK-P-ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPA 190 (338)
Q Consensus 113 ~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~-~-~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~ 190 (338)
++|+++|++|++|||+||||||++|||||||+++|+|.+ +. . ++.+.|..++ ..+|+++...+..+.+++||.+
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~-~~~~~~~~~~~~~~p---~~~w~~~~~~~~~~~~~~Pn~~ 77 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKK-YPQNVFDIDFFYSHP---EEFYRFAKEGIFPMLEAKPNLA 77 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccC-CcccccCHHHHHhCH---HHHHHHHHHhhcccccCCCCHH
Confidence 568899999999999999999999999999999999974 32 2 3555666654 4666655444444568999999
Q ss_pred HHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCC
Q 019598 191 HFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSP 269 (338)
Q Consensus 191 H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~ 269 (338)
|++|++|+++|++.+||||||||||++||. +|+|+||++.+++|++|++.|+.+.+...+
T Consensus 78 H~ala~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~------------------- 138 (244)
T PRK14138 78 HVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKL------------------- 138 (244)
T ss_pred HHHHHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHH-------------------
Confidence 999999999999999999999999999998 799999999999999999988765432211
Q ss_pred CCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 270 GSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 270 ~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....+|+||.|||.|||+||||||++|.+.++++.+.+.++|+
T Consensus 139 ------------------------~~~~~p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl 181 (244)
T PRK14138 139 ------------------------EKSDVPRCDDCSGLIRPNIVFFGEALPQDALREAIRLSSKASL 181 (244)
T ss_pred ------------------------hcCCCCCCCCCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCE
Confidence 0113799999999999999999999999999999988888774
No 7
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=1.6e-45 Score=340.50 Aligned_cols=170 Identities=39% Similarity=0.684 Sum_probs=141.1
Q ss_pred HhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 019598 119 FDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALA 195 (338)
Q Consensus 119 I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aLa 195 (338)
|++|++|||+||||||++|||||||+.+|+|. .|.+ ++...|..+ +..+|+++...+.....++||.+|++|+
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~-~~~~~~~~~~~~f~~~---p~~~w~~~~~~~~~~~~a~Pn~~H~~La 76 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWK-KYDPEEVASIDYFYRN---PEEFWRFYKEIILGLLEAQPNKAHYFLA 76 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcC-CCCHHHhccHHHHhHC---HHHHHHHHHHHhcccCCCCCCHHHHHHH
Confidence 46789999999999999999999999999997 4554 255556554 4566665544444456899999999999
Q ss_pred HHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCC
Q 019598 196 SLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 274 (338)
Q Consensus 196 ~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~ 274 (338)
+|++.|++.+||||||||||++||. +|+|+||++..++|++|+..++++.+.. +
T Consensus 77 ~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~C~~~~~~~~~~~-~------------------------ 131 (222)
T cd01413 77 ELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVKY-A------------------------ 131 (222)
T ss_pred HHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECCCCCCcchhHHHH-h------------------------
Confidence 9999999999999999999999999 7999999999999999998876543200 0
Q ss_pred cCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 275 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 275 ~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....+|+||.|||.|||+||||||.+|.+.++.+.+.+.+.|+
T Consensus 132 -------------------~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl 174 (222)
T cd01413 132 -------------------KKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAIEAAKEADL 174 (222)
T ss_pred -------------------ccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCE
Confidence 0123799999999999999999999999999999988887774
No 8
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5e-45 Score=340.82 Aligned_cols=175 Identities=39% Similarity=0.697 Sum_probs=146.0
Q ss_pred HHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCCC---CHHHHhhchHHHHHHHHHHHHHHHhhhcCCC
Q 019598 111 DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPI---THQQFVRSSRARRRYWARSYAGWRRFMAAQP 187 (338)
Q Consensus 111 ~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~~---~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~P 187 (338)
+++.|+++|++|++|||+||||||++|||||||+.+|+|.. +++. +...|..+ +..+|+++......+.+++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~-~~~~~~~~~~~~~~~---p~~~w~f~~~~~~~~~~~~P 77 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEE-HRPEDVASPEGFARD---PELVWKFYNERRRQLLDAKP 77 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccC-CCHHHhccHHHHhhC---HHHHHHHHHHHHHHhccCCC
Confidence 46789999999999999999999999999999999999973 5542 44555544 45666654333334558999
Q ss_pred CHHHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcC
Q 019598 188 NPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDY 266 (338)
Q Consensus 188 n~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~ 266 (338)
|.+|++|++|++.|++++|||||||+||++||. +|+|+||++..++|++|++.|+.+.+
T Consensus 78 n~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~-------------------- 137 (242)
T PRK00481 78 NAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLDEY-------------------- 137 (242)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCCCCCCcChhhh--------------------
Confidence 999999999999999999999999999999998 79999999999999999887654321
Q ss_pred CCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 267 GSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 267 ~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
+ ...+|+||.|||.|||+||||||.+|...++.+.+.++++|+
T Consensus 138 --------------------~-------~~~~p~C~~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl 180 (242)
T PRK00481 138 --------------------L-------KPEPPRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADL 180 (242)
T ss_pred --------------------c-------cCCCCCCCCCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCE
Confidence 0 012688999999999999999999999889888888887764
No 9
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.6e-44 Score=334.65 Aligned_cols=168 Identities=35% Similarity=0.644 Sum_probs=138.8
Q ss_pred HHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCC--CCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCH
Q 019598 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG--FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (338)
Q Consensus 115 L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~--~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~ 189 (338)
|+++|++|++|||+||||||++|||||||+.+|+|... +++ ++.+.|..++ ..||+++... ..+.+++||.
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~-~~~~~~~Pn~ 76 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREP---EKFYQFVKEN-LYFPDAKPNI 76 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCH---HHHHHHHHHH-hhCCCCCCCH
Confidence 46788999999999999999999999999999999753 344 2445555554 4566543222 2345899999
Q ss_pred HHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCC
Q 019598 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (338)
Q Consensus 190 ~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~ 268 (338)
+|++|++|++.+ +++|||||||+||++||. +|+||||++..++|++|+..++.+.
T Consensus 77 ~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~----------------------- 132 (225)
T cd01411 77 IHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEE----------------------- 132 (225)
T ss_pred HHHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhh-----------------------
Confidence 999999999887 889999999999999998 7999999999999999987664211
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 269 ~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
...+|+||.|||+|||+||||||.+|.+.++.+.+.+++.|+
T Consensus 133 --------------------------~~~~p~C~~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~Dl 174 (225)
T cd01411 133 --------------------------YLKSPYHAKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADL 174 (225)
T ss_pred --------------------------cCCCCCCCCCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCE
Confidence 012699999999999999999999999999999988888774
No 10
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=2.7e-44 Score=335.16 Aligned_cols=166 Identities=31% Similarity=0.525 Sum_probs=133.9
Q ss_pred CcEEEEECCcccccCCCCCccCCC-CCCCCC-----CCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 019598 123 AKLIVLTGAGISTECGIPDYRSPN-GAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFA 193 (338)
Q Consensus 123 k~IVVlTGAGISaaSGIPdFR~~~-Gly~~~-----~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~a 193 (338)
++|||+||||||++||||||||.+ |+|... +.+ ++.+.|..++ +.||.++..... .+++||.+|++
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p---~~~~~~~~~~~~--~~a~Pn~~H~~ 75 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNP---RPFYALAKELYP--GQFKPSVAHYF 75 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHCh---HHHHHHHHHHhc--CcCCCCHHHHH
Confidence 579999999999999999999999 999741 111 2455566554 566654322221 47999999999
Q ss_pred HHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCC
Q 019598 194 LASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 270 (338)
Q Consensus 194 La~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~ 270 (338)
|++|+++|++++||||||||||+|||+ +|+||||++..++|.+|++.++++.+...+
T Consensus 76 la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~-------------------- 135 (235)
T cd01408 76 IKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDI-------------------- 135 (235)
T ss_pred HHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHH--------------------
Confidence 999999999999999999999999997 699999999999999999987654332111
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 271 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 271 ~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....+|+||.|||.|||+||||||++|.+.++.+.+.+++.|+
T Consensus 136 -----------------------~~~~~p~C~~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDl 178 (235)
T cd01408 136 -----------------------FNQEVPKCPRCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADL 178 (235)
T ss_pred -----------------------hCCCCccCCCCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCE
Confidence 0113799999999999999999999999888888888887774
No 11
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=8.5e-44 Score=327.64 Aligned_cols=165 Identities=41% Similarity=0.730 Sum_probs=135.2
Q ss_pred CcEEEEECCcccccCCCCCccCCCCCCCCCCCCC----CHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 019598 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPI----THQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 198 (338)
Q Consensus 123 k~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~~----~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aLa~Le 198 (338)
++|||+||||||++|||||||+++|+|.. +.+. +.+.|..+ ++.+|+++..... ...++||.+|++|++|+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~-~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~-~~~~~Pn~~H~~L~~L~ 75 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWAR-LDPEELAFSPEAFRRD---PELFWGFYRERRY-PLNAQPNPAHRALAELE 75 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCcccc-CChhhccCCHHHHHHC---HHHHHHHHHHhhh-hccCCCCHHHHHHHHHH
Confidence 57999999999999999999999999974 4432 44455554 4566765444433 66899999999999999
Q ss_pred HcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCc
Q 019598 199 KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGM 277 (338)
Q Consensus 199 ~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~~~~ 277 (338)
+.|++++||||||||||++||+ +|+|+||++..++|+.|++.+..+.+...+
T Consensus 76 ~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~--------------------------- 128 (218)
T cd01407 76 RKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQADI--------------------------- 128 (218)
T ss_pred hcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHhHhh---------------------------
Confidence 9999999999999999999999 799999999999999999887544321000
Q ss_pred ccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 278 KQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 278 ~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....+|+||.|||.|||+||||||++|.. ++++.+.+.+.|+
T Consensus 129 ----------------~~~~~p~C~~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl 170 (218)
T cd01407 129 ----------------DREEVPRCPKCGGLLRPDVVFFGESLPEE-LDEAAEALAKADL 170 (218)
T ss_pred ----------------ccCCCCcCCCCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCE
Confidence 01248999999999999999999999988 9988888877663
No 12
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=7.4e-44 Score=326.37 Aligned_cols=155 Identities=35% Similarity=0.560 Sum_probs=128.9
Q ss_pred CcEEEEECCcccccCCCCCccCCCCCCCCCCCCCCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHcCC
Q 019598 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGR 202 (338)
Q Consensus 123 k~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aLa~Le~~gk 202 (338)
++|||+||||||++|||||||+++|+|.. +++ +.. .+..+|.++ .++||.+|++|++|++.|+
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~-~~~-----~~~---~~~~~~~~~--------~~~Pn~~H~~La~l~~~g~ 63 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTL-LPE-----DKG---RRRFSWRFR--------RAEPTLTHMALVELERAGL 63 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCccc-CCc-----ccc---ChHHHhhhh--------cCCCCHHHHHHHHHHHCCC
Confidence 57999999999999999999999999974 333 122 244566531 4899999999999999999
Q ss_pred cceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCccc
Q 019598 203 IDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQ 279 (338)
Q Consensus 203 l~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
+.+||||||||||++||+ +|+||||++..++|++|+..+..+.+.+.+.
T Consensus 64 ~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~---------------------------- 115 (206)
T cd01410 64 LKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRG---------------------------- 115 (206)
T ss_pred CceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHhh----------------------------
Confidence 999999999999999997 5999999999999999998876543321110
Q ss_pred CCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 280 ~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....+|+||.|||.|||+||||||++|...++.+.+.++++|+
T Consensus 116 --------------~~~~~p~C~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDl 158 (206)
T cd01410 116 --------------DKETGRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADL 158 (206)
T ss_pred --------------cCCCCCcCCCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCE
Confidence 0123799999999999999999999999999999999888774
No 13
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=4.6e-43 Score=342.03 Aligned_cols=179 Identities=25% Similarity=0.472 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhc--CCcEEEEECCcccccCCCCCccCC-CCCCCCC--CC---C---CCHHHHhhchHHHHHHHHHHHHH
Q 019598 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSP-NGAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAG 178 (338)
Q Consensus 110 ~~i~~L~~~I~~--Ak~IVVlTGAGISaaSGIPdFR~~-~Gly~~~--~~---~---~~~~~f~~~~~~~~~~wa~~~~~ 178 (338)
..++.|+++|++ +++|||+||||||++|||||||++ +|+|... +. + ++...|..+ +..||.++..
T Consensus 15 ~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~---P~~f~~~~r~- 90 (349)
T PTZ00410 15 PTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREK---PEVFYSIARE- 90 (349)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHC---HHHHHHHHHH-
Confidence 557889999997 679999999999999999999999 5999742 22 2 233444443 4567764322
Q ss_pred HHhh-hcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhC
Q 019598 179 WRRF-MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALN 254 (338)
Q Consensus 179 ~~~~-~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~n 254 (338)
.... ..++||.+|++|+.|++.|++.+||||||||||++||+ +|+||||++..++|.+|+..|+.+......
T Consensus 91 ~~~~~~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~---- 166 (349)
T PTZ00410 91 MDLWPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEA---- 166 (349)
T ss_pred hhcccCcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHh----
Confidence 1112 35899999999999999999999999999999999997 599999999999999999877543221000
Q ss_pred hhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccC
Q 019598 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPAD 334 (338)
Q Consensus 255 p~~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~ 334 (338)
....+|+|+.|||+|||+||||||++|.+.++ +.+.+.+.
T Consensus 167 ---------------------------------------~~~~vP~C~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~a 206 (349)
T PTZ00410 167 ---------------------------------------RSGKVPHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPEA 206 (349)
T ss_pred ---------------------------------------hcCCCCCCCCCCCccCCcEEecCCcCCHHHHH-HHHHHHhC
Confidence 01237999999999999999999999998777 77777776
Q ss_pred CC
Q 019598 335 DY 336 (338)
Q Consensus 335 ~~ 336 (338)
|+
T Consensus 207 Dl 208 (349)
T PTZ00410 207 EL 208 (349)
T ss_pred CE
Confidence 64
No 14
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=1.1e-42 Score=321.03 Aligned_cols=163 Identities=39% Similarity=0.657 Sum_probs=133.9
Q ss_pred CcEEEEECCcccccCCCCCccCCCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 019598 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEK 199 (338)
Q Consensus 123 k~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aLa~Le~ 199 (338)
++|||+||||||++|||||||+.+|+|. .+.+ .+.+.|..++ +.+|+++......+..++||.+|++|++|++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~-~~~~~~~~~~~~f~~~p---~~~w~f~~~~~~~~~~~~Pn~~H~~L~~L~~ 76 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWA-RFDPEELATPEAFARDP---ELVWEFYNWRRRKALRAQPNPAHLALAELER 76 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcC-CCChhhcCCHHHHHHCH---HHHHHHHHHHHHHccccCCCHHHHHHHHHHh
Confidence 5799999999999999999999999997 4554 3556665554 5667654433334568999999999999999
Q ss_pred cCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCcc
Q 019598 200 AGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMK 278 (338)
Q Consensus 200 ~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
++++++||||||||||++||+ +|+|+||++..++|..|+..+..+..
T Consensus 77 ~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~~-------------------------------- 124 (224)
T cd01412 77 RLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNEE-------------------------------- 124 (224)
T ss_pred cCCCeEEEEccchHhhHHhCCCceEeeCCCcCccccCCCCCCCCcchh--------------------------------
Confidence 998999999999999999999 79999999999999999987643200
Q ss_pred cCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 279 QRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 279 ~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
+ ....+|+||.|||.|||+||||||.+|. .++.+.+.+.+.|+
T Consensus 125 --------~------~~~~~p~C~~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl 167 (224)
T cd01412 125 --------I------PEEELPRCPKCGGLLRPGVVWFGESLPL-ALLEAVEALAKADL 167 (224)
T ss_pred --------h------hccCCCCCCCCCCccCCceEECCCCCHH-HHHHHHHHHHcCCE
Confidence 0 0123799999999999999999999988 88888888877764
No 15
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.3e-42 Score=323.74 Aligned_cols=165 Identities=32% Similarity=0.523 Sum_probs=129.0
Q ss_pred hcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 019598 120 DNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALAS 196 (338)
Q Consensus 120 ~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aLa~ 196 (338)
++|++|||+||||||++|||||||+.+|+|. .+++ .+.+.|..++...++||.+... .....+++||.+|++|++
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~-~~~~~~~~~~~~f~~~p~~~~~f~~~~~~-~~~~~~~~Pn~~H~~L~~ 79 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWE-NHRVEDVATPDAFLRNPALVQRFYNERRR-ALLSSSVKPNKAHFALAK 79 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCC-CCChhhcCCHHHHHhCHHHHHHHHHHHHH-HhccCCCCCCHHHHHHHH
Confidence 4689999999999999999999999999996 4554 4667777776544444432111 111257899999999999
Q ss_pred HHHc--CCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCC
Q 019598 197 LEKA--GRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 273 (338)
Q Consensus 197 Le~~--gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~ 273 (338)
|++. |++++||||||||||++||+ +|+|+||++..++|++|++.++.+. .
T Consensus 80 Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~--------------~------------- 132 (242)
T PTZ00408 80 LEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTE--------------D------------- 132 (242)
T ss_pred HHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECCCCcccCchh--------------h-------------
Confidence 9975 88899999999999999998 6999999999999999998764321 0
Q ss_pred CcCcccCCCCCcccccccccccCCCCCCCCCC--CeeccceeecCC-CCChhhHHHHhhccccCCC
Q 019598 274 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCN--GVLKPDVSTSLS-LIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 274 ~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~Cg--G~LrP~VV~FGE-~l~~~~~~~~~~~~~~~~~ 336 (338)
+ ...+|.||.|| |.|||+|||||| .++.+.++++ +.+.|+
T Consensus 133 -------------~-------~~~~p~C~~Cg~~g~lrP~vV~FGE~~~~~~~~~~~---~~~~Dl 175 (242)
T PTZ00408 133 -------------V-------VHGSSRCKCCGCVGTLRPHIVWFGEMPLYMDEIESV---MSKTDL 175 (242)
T ss_pred -------------h-------hcCCCccccCCCCCCCCCCEEEcCCCCCcHHHHHHH---HHhCCE
Confidence 0 01269999998 999999999999 8887666644 445553
No 16
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=3e-42 Score=307.67 Aligned_cols=160 Identities=38% Similarity=0.675 Sum_probs=116.3
Q ss_pred CCcccccCCCCCccC-CCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHHHHcCCcc
Q 019598 130 GAGISTECGIPDYRS-PNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRF-MAAQPNPAHFALASLEKAGRID 204 (338)
Q Consensus 130 GAGISaaSGIPdFR~-~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~-~~a~Pn~~H~aLa~Le~~gkl~ 204 (338)
|||||++|||||||+ .+|+|.. ++. .+.+.|..++...+..|..++. ... ..++||.+|++|++|++.|++.
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~-~~~~~l~~~~~~~~~~~~~~~~f~~~~~--~~~~~~a~Pn~~H~~La~L~~~g~~~ 77 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTK-YKPEELATPEAFFSDPEFVWEKFYRFRR--KVISKDAEPNPGHRALAELEKKGKLK 77 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHH-CHHHHHSSHHHHHHHHHHHHHHHHHHHH--HHCTCTS---HHHHHHHHHHHTTSEE
T ss_pred CCccchhhCCCccccCCCCccee-eeccccccccccccccchhhhHHHHHhh--hhccccCCCChhHHHHHHHHHhhhhc
Confidence 999999999999999 8999973 332 2445555554333331211111 122 2899999999999999999999
Q ss_pred eeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCcccCCCC
Q 019598 205 CMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDG 283 (338)
Q Consensus 205 ~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~~~~~~~pdg 283 (338)
+||||||||||++||+ +|+||||++..++|+.|++.+..+.+.....
T Consensus 78 ~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~-------------------------------- 125 (178)
T PF02146_consen 78 RVITQNIDGLHQKAGSPKVIELHGSLFRLRCSKCGKEYDREDIVDSID-------------------------------- 125 (178)
T ss_dssp EEEES-SSSHHHHTTESCEEETTEEEEEEEETTTSBEEEGHHHHHHHH--------------------------------
T ss_pred cceecccchhhhcccchhhHHHHhhhceeeecCCCccccchhhccccc--------------------------------
Confidence 9999999999999999 8999999999999999999987654432210
Q ss_pred CcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 284 DIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 284 d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....|+||.|||.|||+||||||.+| +.+..+.+.+.+.|+
T Consensus 126 -----------~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl 166 (178)
T PF02146_consen 126 -----------EEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADL 166 (178)
T ss_dssp -----------TTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SE
T ss_pred -----------ccccccccccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCE
Confidence 12368999999999999999999999 889999888877774
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=3.4e-38 Score=288.89 Aligned_cols=163 Identities=39% Similarity=0.656 Sum_probs=132.0
Q ss_pred CcEEEEECCcccccCCCCCccCCC-CCCCCCCCCC----CHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 019598 123 AKLIVLTGAGISTECGIPDYRSPN-GAYSSGFKPI----THQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASL 197 (338)
Q Consensus 123 k~IVVlTGAGISaaSGIPdFR~~~-Gly~~~~~~~----~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aLa~L 197 (338)
+++|++||||||++|||||||+.+ |+|.. +... +...|..+ ++.+|.++.........++||.+|++|++|
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~P~~~H~~l~~l 76 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTR-LDPEELAFSPEAFRRD---PELFWLFYKERRYTPLDAKPNPAHRALAEL 76 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhc-CCcccccCCHHHHHHC---HHHHHHHHHHHHhhhCcCCCCHHHHHHHHH
Confidence 579999999999999999999998 99974 3221 34444444 456776544433345689999999999999
Q ss_pred HHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCC
Q 019598 198 EKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 274 (338)
Q Consensus 198 e~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~ 274 (338)
++.|++.+|||||||+||++||+ +|+|+||++...+|..|+..++.+.+..
T Consensus 77 ~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~-------------------------- 130 (222)
T cd00296 77 ERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLE-------------------------- 130 (222)
T ss_pred HHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhh--------------------------
Confidence 99999999999999999999998 5999999999999999998765432210
Q ss_pred cCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCC
Q 019598 275 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADD 335 (338)
Q Consensus 275 ~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~ 335 (338)
...+|+||.|||.|||+||+|||.++...+..+.+.+.+.|
T Consensus 131 --------------------~~~~p~C~~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d 171 (222)
T cd00296 131 --------------------REKPPRCPKCGGLLRPDVVDFGEALPKEWFDRALEALLEAD 171 (222)
T ss_pred --------------------ccCCCCCCCCCCcccCceEECCCCCCHHHHHHHHHHHhcCC
Confidence 01379999999999999999999999887888777776665
No 18
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.7e-37 Score=298.60 Aligned_cols=176 Identities=27% Similarity=0.447 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCC--CCCCCCHHHHhhchHHH---HHHHHHHHHHHH
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSS--GFKPITHQQFVRSSRAR---RRYWARSYAGWR 180 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~--~~~~~~~~~f~~~~~~~---~~~wa~~~~~~~ 180 (338)
.+.-+.++.+..+|++|++|||+||||||+++|||||||++|+|.+ ....-+..+++.....+ ..|+.+ ....
T Consensus 72 ~~~~~t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~--a~~l 149 (412)
T KOG2684|consen 72 LSNFNTLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRF--AREL 149 (412)
T ss_pred CCccccHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHH--HHHh
Confidence 3334678899999999999999999999999999999999999984 21222444444432222 233321 1111
Q ss_pred hhhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhChhh
Q 019598 181 RFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKW 257 (338)
Q Consensus 181 ~~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~ 257 (338)
......|++.|.+|+.|+++||+.++||||||+|+++||. ++++|||++....|+.|++..+.+.+.
T Consensus 150 ~~~~~~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~---------- 219 (412)
T KOG2684|consen 150 KPPSNNPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELR---------- 219 (412)
T ss_pred cCCccCCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHH----------
Confidence 2235669999999999999999999999999999999998 499999999999999999987655321
Q ss_pred HHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC------------------eeccceeecCCCC
Q 019598 258 AEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG------------------VLKPDVSTSLSLI 319 (338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG------------------~LrP~VV~FGE~l 319 (338)
..+ ....+|.||.|.+ +|||+||||||++
T Consensus 220 ~~~---------------------------------~~~~vp~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~l 266 (412)
T KOG2684|consen 220 EDI---------------------------------RNQEVPVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENL 266 (412)
T ss_pred HHH---------------------------------hcCcCccCcccccccccccCccccccccCccccccceEEecCCC
Confidence 110 1234899999965 9999999999999
Q ss_pred ChhhHHH
Q 019598 320 EVNSISI 326 (338)
Q Consensus 320 ~~~~~~~ 326 (338)
|+.-...
T Consensus 267 P~~~~~~ 273 (412)
T KOG2684|consen 267 PDSFHIG 273 (412)
T ss_pred ChHHHhh
Confidence 9754443
No 19
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=4.5e-33 Score=256.21 Aligned_cols=172 Identities=28% Similarity=0.524 Sum_probs=137.1
Q ss_pred HHHHHHHHHh--cCCcEEEEECCcccccCCCCCccCCC-CCCCC--CCCC------CCHHHHhhchHHHHHHHHHHHHHH
Q 019598 111 DINQLYQFFD--NSAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFKP------ITHQQFVRSSRARRRYWARSYAGW 179 (338)
Q Consensus 111 ~i~~L~~~I~--~Ak~IVVlTGAGISaaSGIPdFR~~~-Gly~~--~~~~------~~~~~f~~~~~~~~~~wa~~~~~~ 179 (338)
.++.+++.++ ..++++|..||||||+|||||||+++ |+|.. .|+. +....|..+ ++.|+.- +..
T Consensus 23 ~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~n---P~PF~tL--AkE 97 (314)
T KOG2682|consen 23 TLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKN---PEPFFTL--AKE 97 (314)
T ss_pred hHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcC---CchHHHH--HHH
Confidence 3778888887 45889999999999999999999985 89974 2332 233444444 3456542 222
Q ss_pred HhhhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecC-CCCcccchhhHHHHHHhhCh
Q 019598 180 RRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCL-DCGFSFCRDLFQDQVKALNP 255 (338)
Q Consensus 180 ~~~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~-~C~~~~~r~~~~~~l~~~np 255 (338)
..-.+.+|+.+|++|+.|.++|.+.++||||||+|.+.||. .++|-||++.+.+|. .|++.|+.+.+...+.
T Consensus 98 LyPgnfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~---- 173 (314)
T KOG2682|consen 98 LYPGNFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM---- 173 (314)
T ss_pred hCCCCcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH----
Confidence 23358899999999999999999999999999999999998 589999999999999 5999998765533220
Q ss_pred hhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccC
Q 019598 256 KWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPAD 334 (338)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~ 334 (338)
...+|+|+.|+|++||+||||||.|| .+++++++.|
T Consensus 174 ---------------------------------------~~~vpkC~vC~~lVKP~IVFfGE~LP----~rF~e~~~~D 209 (314)
T KOG2682|consen 174 ---------------------------------------SEVVPKCEVCQGLVKPDIVFFGESLP----ARFFECMQSD 209 (314)
T ss_pred ---------------------------------------hccCCCCchhhccccccEEEecCCcc----HHHHHHHhhc
Confidence 12389999999999999999999999 5888888766
No 20
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.6e-29 Score=237.40 Aligned_cols=174 Identities=31% Similarity=0.490 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCCCCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn 188 (338)
...+++|++++++|+++||+|||||||+||||||||++|.|...-+- .+ .....+..|.|+
T Consensus 42 ~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG-------~~------------~~~~df~~ArPt 102 (353)
T KOG1905|consen 42 RTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKG-------KD------------KFGVDFSEARPT 102 (353)
T ss_pred HHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcC-------cc------------ccCCchhhcCCc
Confidence 46899999999999999999999999999999999999999731110 00 001235579999
Q ss_pred HHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhc
Q 019598 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (338)
Q Consensus 189 ~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~ 265 (338)
.+|.+|.+|++.|.+.+||||||||||.|.|+ ++.||||+++-.+|.+|...|.++..++.....
T Consensus 103 ~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~------------ 170 (353)
T KOG1905|consen 103 VTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLK------------ 170 (353)
T ss_pred chHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeecccc------------
Confidence 99999999999999999999999999999999 589999999999999999988766443222000
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCC-CCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFH-IPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~-iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
+....+ +.. --+|..|-|.|+-.++=..+.+|.++++.+-++...+|+
T Consensus 171 ---at~R~c--------------------t~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~ 219 (353)
T KOG1905|consen 171 ---ATGRHC--------------------TGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADL 219 (353)
T ss_pred ---cccccc--------------------cccccccccccccchhhccccccccCCchhhHHHHHHhhhcce
Confidence 000000 000 134666678889998888889999999999999888875
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=98.95 E-value=9e-10 Score=102.56 Aligned_cols=111 Identities=21% Similarity=0.233 Sum_probs=66.2
Q ss_pred CcEEEEECCcccccCCCCCccCC-CCCCCC---CC--------CCCCHH---HHhhchHHHHHHHHHH-HHHHHhhhcCC
Q 019598 123 AKLIVLTGAGISTECGIPDYRSP-NGAYSS---GF--------KPITHQ---QFVRSSRARRRYWARS-YAGWRRFMAAQ 186 (338)
Q Consensus 123 k~IVVlTGAGISaaSGIPdFR~~-~Gly~~---~~--------~~~~~~---~f~~~~~~~~~~wa~~-~~~~~~~~~a~ 186 (338)
+++|++.|||+|+++|+|+|++- ..++.. .. ....+. +++..... ...+... ..........+
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFG-TIGIKINAVLEEKTRPDFE 79 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhc-cchhhhHHHHHhccCCCCC
Confidence 46999999999999999998753 111110 00 011111 11111000 0001000 00011124678
Q ss_pred CCHHHHHHHHHHHcCC-cceeeecccchhHhhhC----------------------C-CeEEeecccCceec
Q 019598 187 PNPAHFALASLEKAGR-IDCMITQNVDRLHHRAG----------------------S-NPLELHGTVYTVVC 234 (338)
Q Consensus 187 Pn~~H~aLa~Le~~gk-l~~ViTQNID~Lh~rAG----------------------~-kviELHGsl~~~qC 234 (338)
|+..|.+|+.|...+. ...|||+|.|.|.++|- . .|+.|||++.....
T Consensus 80 ~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~klHG~~~~~~~ 151 (242)
T cd01406 80 PSPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVVKVIVSVQLALSASARFNGVYKIHGDVDDDES 151 (242)
T ss_pred CCHHHHHHHhchhccCCceEEEEcchHHHHHHHHHHcCCCCCcccCccccccccCCCceEEEEecccCCCCc
Confidence 9999999999986653 56899999999998751 0 37999999987643
No 22
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=90.36 E-value=0.17 Score=44.47 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=11.1
Q ss_pred cCceecCCCCccc
Q 019598 229 VYTVVCLDCGFSF 241 (338)
Q Consensus 229 l~~~qC~~C~~~~ 241 (338)
...++|.+|++..
T Consensus 110 ~G~l~C~~Cg~~~ 122 (146)
T PF07295_consen 110 PGTLVCENCGHEV 122 (146)
T ss_pred CceEecccCCCEE
Confidence 6788999999875
No 23
>PRK11032 hypothetical protein; Provisional
Probab=90.06 E-value=0.19 Score=44.92 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=11.5
Q ss_pred cCceecCCCCcccc
Q 019598 229 VYTVVCLDCGFSFC 242 (338)
Q Consensus 229 l~~~qC~~C~~~~~ 242 (338)
+..++|.+|++...
T Consensus 122 ~G~LvC~~Cg~~~~ 135 (160)
T PRK11032 122 LGNLVCEKCHHHLA 135 (160)
T ss_pred cceEEecCCCCEEE
Confidence 66889999999753
No 24
>PF13289 SIR2_2: SIR2-like domain
Probab=85.40 E-value=0.6 Score=38.94 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=10.9
Q ss_pred eeeecccchhHhhh
Q 019598 205 CMITQNVDRLHHRA 218 (338)
Q Consensus 205 ~ViTQNID~Lh~rA 218 (338)
.|||+|.|.|.++|
T Consensus 2 ~iiTtNyD~llE~a 15 (143)
T PF13289_consen 2 TIITTNYDDLLEKA 15 (143)
T ss_pred EEEECCHhHHHHHH
Confidence 57888888888765
No 25
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=83.65 E-value=0.74 Score=30.90 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=9.7
Q ss_pred CCCCCCCCCeec
Q 019598 298 IPTCQKCNGVLK 309 (338)
Q Consensus 298 iP~Cp~CgG~Lr 309 (338)
...||.||+.++
T Consensus 26 ~~~CP~Cg~~~~ 37 (41)
T smart00834 26 LATCPECGGDVR 37 (41)
T ss_pred CCCCCCCCCcce
Confidence 678999999654
No 26
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=81.17 E-value=0.74 Score=39.85 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=8.8
Q ss_pred eecCCCCcccc
Q 019598 232 VVCLDCGFSFC 242 (338)
Q Consensus 232 ~qC~~C~~~~~ 242 (338)
-+|++|++.+.
T Consensus 2 H~Ct~Cg~~f~ 12 (131)
T PF09845_consen 2 HQCTKCGRVFE 12 (131)
T ss_pred cccCcCCCCcC
Confidence 37999998863
No 27
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=77.55 E-value=1.5 Score=29.27 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=9.4
Q ss_pred CCCCCCCCCeec
Q 019598 298 IPTCQKCNGVLK 309 (338)
Q Consensus 298 iP~Cp~CgG~Lr 309 (338)
..+||.||..+.
T Consensus 25 ~v~C~~C~~~~~ 36 (38)
T TIGR02098 25 KVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEE
Confidence 468999998764
No 28
>PF14353 CpXC: CpXC protein
Probab=76.76 E-value=0.75 Score=38.87 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=10.4
Q ss_pred ceecCCCCcccchh
Q 019598 231 TVVCLDCGFSFCRD 244 (338)
Q Consensus 231 ~~qC~~C~~~~~r~ 244 (338)
++.|.+|++....+
T Consensus 1 ~itCP~C~~~~~~~ 14 (128)
T PF14353_consen 1 EITCPHCGHEFEFE 14 (128)
T ss_pred CcCCCCCCCeeEEE
Confidence 36899999986544
No 29
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=75.29 E-value=1.7 Score=30.03 Aligned_cols=13 Identities=38% Similarity=1.134 Sum_probs=10.4
Q ss_pred cCceecCCCCccc
Q 019598 229 VYTVVCLDCGFSF 241 (338)
Q Consensus 229 l~~~qC~~C~~~~ 241 (338)
++..+|.+|++.+
T Consensus 3 ~Yey~C~~Cg~~f 15 (42)
T PF09723_consen 3 IYEYRCEECGHEF 15 (42)
T ss_pred CEEEEeCCCCCEE
Confidence 4567999999875
No 30
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=74.89 E-value=1.1 Score=37.17 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=9.1
Q ss_pred eecCCCCcccc
Q 019598 232 VVCLDCGFSFC 242 (338)
Q Consensus 232 ~qC~~C~~~~~ 242 (338)
.||++||..|+
T Consensus 3 H~CtrCG~vf~ 13 (112)
T COG3364 3 HQCTRCGEVFD 13 (112)
T ss_pred ceecccccccc
Confidence 48999999874
No 31
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=74.46 E-value=4.7 Score=29.32 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=16.3
Q ss_pred CCCeEEeecccCceecCCCCcccchhh
Q 019598 219 GSNPLELHGTVYTVVCLDCGFSFCRDL 245 (338)
Q Consensus 219 G~kviELHGsl~~~qC~~C~~~~~r~~ 245 (338)
|.-+..++|. .|..|+...+.+.
T Consensus 14 g~~va~v~~~----~C~gC~~~l~~~~ 36 (56)
T PF02591_consen 14 GVAVARVEGG----TCSGCHMELPPQE 36 (56)
T ss_pred CcEEEEeeCC----ccCCCCEEcCHHH
Confidence 3357788776 8999998765443
No 32
>PRK07591 threonine synthase; Validated
Probab=72.60 E-value=2.2 Score=43.43 Aligned_cols=14 Identities=21% Similarity=0.707 Sum_probs=11.1
Q ss_pred cCceecCCCCcccc
Q 019598 229 VYTVVCLDCGFSFC 242 (338)
Q Consensus 229 l~~~qC~~C~~~~~ 242 (338)
+..++|..|++.|+
T Consensus 16 ~~~l~C~~Cg~~~~ 29 (421)
T PRK07591 16 AVALKCRECGAEYP 29 (421)
T ss_pred eeEEEeCCCCCcCC
Confidence 44589999998874
No 33
>PRK12496 hypothetical protein; Provisional
Probab=71.86 E-value=2.3 Score=37.92 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=15.8
Q ss_pred hCCCeEEeec-----ccC-ceecCCCCcccc
Q 019598 218 AGSNPLELHG-----TVY-TVVCLDCGFSFC 242 (338)
Q Consensus 218 AG~kviELHG-----sl~-~~qC~~C~~~~~ 242 (338)
.|.++.-+|+ ... ..+|..|+..|+
T Consensus 108 lgi~v~~~~~~~i~~~~~w~~~C~gC~~~~~ 138 (164)
T PRK12496 108 LNIKFENIKTKGIKKVIKWRKVCKGCKKKYP 138 (164)
T ss_pred cCCeEeccccccchhheeeeEECCCCCcccc
Confidence 4556666662 221 257999998774
No 34
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=70.24 E-value=9.4 Score=40.40 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCcEEEEECCcccccC
Q 019598 110 EDINQLYQFFDNSAKLIVLTGAGISTEC 137 (338)
Q Consensus 110 ~~i~~L~~~I~~Ak~IVVlTGAGISaaS 137 (338)
++|++++++|.+|++.||+.|.|+.-+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 8899999999999999999999998876
No 35
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=67.69 E-value=3.8 Score=27.50 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=9.5
Q ss_pred ceecCCCCcccc
Q 019598 231 TVVCLDCGFSFC 242 (338)
Q Consensus 231 ~~qC~~C~~~~~ 242 (338)
...|.+|+..|.
T Consensus 2 ~i~Cp~C~~~y~ 13 (36)
T PF13717_consen 2 IITCPNCQAKYE 13 (36)
T ss_pred EEECCCCCCEEe
Confidence 368999998874
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.56 E-value=3.4 Score=39.29 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=14.5
Q ss_pred CeEEeecccCceecCCCCcccchh
Q 019598 221 NPLELHGTVYTVVCLDCGFSFCRD 244 (338)
Q Consensus 221 kviELHGsl~~~qC~~C~~~~~r~ 244 (338)
-|+.+.|. .|..|+-..+..
T Consensus 191 gvvpl~g~----~C~GC~m~l~~~ 210 (239)
T COG1579 191 GVVPLEGR----VCGGCHMKLPSQ 210 (239)
T ss_pred eEEeecCC----cccCCeeeecHH
Confidence 46777775 699999876544
No 37
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=66.89 E-value=3.8 Score=29.09 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=10.5
Q ss_pred cCceecCCCCcccc
Q 019598 229 VYTVVCLDCGFSFC 242 (338)
Q Consensus 229 l~~~qC~~C~~~~~ 242 (338)
++..+|.+|++.+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (52)
T TIGR02605 3 IYEYRCTACGHRFE 16 (52)
T ss_pred CEEEEeCCCCCEeE
Confidence 35678999998763
No 38
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=66.66 E-value=5 Score=35.55 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=13.1
Q ss_pred EeecccCceecCCCCcccc
Q 019598 224 ELHGTVYTVVCLDCGFSFC 242 (338)
Q Consensus 224 ELHGsl~~~qC~~C~~~~~ 242 (338)
+-..+-....|.+|+..|.
T Consensus 102 ~~e~~~~~Y~Cp~c~~r~t 120 (158)
T TIGR00373 102 EFETNNMFFICPNMCVRFT 120 (158)
T ss_pred hhccCCCeEECCCCCcEee
Confidence 3444455678999998774
No 39
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=65.57 E-value=4.3 Score=36.71 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=11.0
Q ss_pred CCCCCCCCCeecc
Q 019598 298 IPTCQKCNGVLKP 310 (338)
Q Consensus 298 iP~Cp~CgG~LrP 310 (338)
...||.||+.|..
T Consensus 136 ~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 136 GFRCPQCGEMLEE 148 (178)
T ss_pred CCcCCCCCCCCee
Confidence 3689999999876
No 40
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=64.99 E-value=5.1 Score=27.97 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.6
Q ss_pred ceecCCCCccc
Q 019598 231 TVVCLDCGFSF 241 (338)
Q Consensus 231 ~~qC~~C~~~~ 241 (338)
..+|.+|+...
T Consensus 3 ~y~C~~CG~~~ 13 (46)
T PRK00398 3 EYKCARCGREV 13 (46)
T ss_pred EEECCCCCCEE
Confidence 56899999764
No 41
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=64.91 E-value=4.1 Score=34.36 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=11.9
Q ss_pred EEeecccCceecCCCCccc
Q 019598 223 LELHGTVYTVVCLDCGFSF 241 (338)
Q Consensus 223 iELHGsl~~~qC~~C~~~~ 241 (338)
+++.=--....|.+|++.+
T Consensus 63 L~Ie~vp~~~~C~~Cg~~~ 81 (117)
T PRK00564 63 LDIVDEKVELECKDCSHVF 81 (117)
T ss_pred EEEEecCCEEEhhhCCCcc
Confidence 3344444567899998654
No 42
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=64.31 E-value=6.6 Score=25.98 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=9.3
Q ss_pred ceecCCCCccc
Q 019598 231 TVVCLDCGFSF 241 (338)
Q Consensus 231 ~~qC~~C~~~~ 241 (338)
.++|..||+.+
T Consensus 2 ~~~C~~CG~i~ 12 (34)
T cd00729 2 VWVCPVCGYIH 12 (34)
T ss_pred eEECCCCCCEe
Confidence 57999999875
No 43
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=63.28 E-value=5 Score=26.98 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.4
Q ss_pred ceecCCCCcccc
Q 019598 231 TVVCLDCGFSFC 242 (338)
Q Consensus 231 ~~qC~~C~~~~~ 242 (338)
..+|.+|+..|.
T Consensus 2 ~i~CP~C~~~f~ 13 (37)
T PF13719_consen 2 IITCPNCQTRFR 13 (37)
T ss_pred EEECCCCCceEE
Confidence 368999998774
No 44
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=63.15 E-value=7 Score=25.51 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=9.5
Q ss_pred ceecCCCCcccc
Q 019598 231 TVVCLDCGFSFC 242 (338)
Q Consensus 231 ~~qC~~C~~~~~ 242 (338)
.++|..|++.|.
T Consensus 1 ~~~C~~CGy~y~ 12 (33)
T cd00350 1 KYVCPVCGYIYD 12 (33)
T ss_pred CEECCCCCCEEC
Confidence 368999998863
No 45
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=60.75 E-value=4.1 Score=26.87 Aligned_cols=12 Identities=58% Similarity=1.248 Sum_probs=9.0
Q ss_pred CCCCCC-Ceeccc
Q 019598 300 TCQKCN-GVLKPD 311 (338)
Q Consensus 300 ~Cp~Cg-G~LrP~ 311 (338)
.||+|| |.|.|-
T Consensus 3 lcpkcgvgvl~pv 15 (36)
T PF09151_consen 3 LCPKCGVGVLEPV 15 (36)
T ss_dssp B-TTTSSSBEEEE
T ss_pred cCCccCceEEEEe
Confidence 599999 888874
No 46
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=60.51 E-value=7 Score=34.03 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=10.1
Q ss_pred CCCCCCCCeecc
Q 019598 299 PTCQKCNGVLKP 310 (338)
Q Consensus 299 P~Cp~CgG~LrP 310 (338)
-.||.||+.|..
T Consensus 124 f~Cp~Cg~~l~~ 135 (147)
T smart00531 124 FTCPRCGEELEE 135 (147)
T ss_pred EECCCCCCEEEE
Confidence 589999998764
No 47
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=60.22 E-value=8.6 Score=42.14 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=12.2
Q ss_pred EeecccCceecCCCCcc
Q 019598 224 ELHGTVYTVVCLDCGFS 240 (338)
Q Consensus 224 ELHGsl~~~qC~~C~~~ 240 (338)
.=-|....+.|..|++.
T Consensus 428 nRRGys~~l~C~~Cg~v 444 (730)
T COG1198 428 NRRGYAPLLLCRDCGYI 444 (730)
T ss_pred ccCCccceeecccCCCc
Confidence 33477777888888875
No 48
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=60.03 E-value=2.5 Score=42.02 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=15.1
Q ss_pred eecccCceecCCCCcccch
Q 019598 225 LHGTVYTVVCLDCGFSFCR 243 (338)
Q Consensus 225 LHGsl~~~qC~~C~~~~~r 243 (338)
.-|-++..-|+.|...|..
T Consensus 240 ~LGKY~~TAC~rC~t~y~l 258 (403)
T COG1379 240 RLGKYHLTACSRCYTRYSL 258 (403)
T ss_pred cccchhHHHHHHhhhccCc
Confidence 3478889999999988754
No 49
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=59.85 E-value=7.5 Score=28.15 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=10.0
Q ss_pred ceecCCCCcccc
Q 019598 231 TVVCLDCGFSFC 242 (338)
Q Consensus 231 ~~qC~~C~~~~~ 242 (338)
.++|..|++.|+
T Consensus 1 ~y~C~~CgyiYd 12 (50)
T cd00730 1 KYECRICGYIYD 12 (50)
T ss_pred CcCCCCCCeEEC
Confidence 368999999885
No 50
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=59.83 E-value=6.3 Score=33.01 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.8
Q ss_pred CCCCCCCCeeccc
Q 019598 299 PTCQKCNGVLKPD 311 (338)
Q Consensus 299 P~Cp~CgG~LrP~ 311 (338)
..||+||....|.
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 4699999887777
No 51
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=57.96 E-value=5.6 Score=44.55 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=14.9
Q ss_pred EeecccCc-----eecCCCCcccch
Q 019598 224 ELHGTVYT-----VVCLDCGFSFCR 243 (338)
Q Consensus 224 ELHGsl~~-----~qC~~C~~~~~r 243 (338)
.|-||++. .+|++|+..|-|
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR 1024 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRR 1024 (1095)
T ss_pred HhhhhHhhhhccceeecccCCcccc
Confidence 45588864 699999988743
No 52
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=56.16 E-value=6.7 Score=37.90 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=13.2
Q ss_pred CCCCCCCCC--eeccceeecC
Q 019598 298 IPTCQKCNG--VLKPDVSTSL 316 (338)
Q Consensus 298 iP~Cp~CgG--~LrP~VV~FG 316 (338)
.+.||+||+ -|+|-.-+-|
T Consensus 368 ~~~c~~c~~~~~~~~~~~~~~ 388 (389)
T PRK11788 368 YWHCPSCKAWETIKPIRGLDG 388 (389)
T ss_pred eeECcCCCCccCcCCcccCCC
Confidence 689999995 4666554444
No 53
>COG1773 Rubredoxin [Energy production and conversion]
Probab=56.13 E-value=14 Score=27.48 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=11.1
Q ss_pred CceecCCCCcccc
Q 019598 230 YTVVCLDCGFSFC 242 (338)
Q Consensus 230 ~~~qC~~C~~~~~ 242 (338)
..++|..|++.|+
T Consensus 2 ~~~~C~~CG~vYd 14 (55)
T COG1773 2 KRWRCSVCGYVYD 14 (55)
T ss_pred CceEecCCceEec
Confidence 4789999999985
No 54
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=55.47 E-value=7.1 Score=33.73 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=11.6
Q ss_pred cCceecCCCCcccch
Q 019598 229 VYTVVCLDCGFSFCR 243 (338)
Q Consensus 229 l~~~qC~~C~~~~~r 243 (338)
-..+.|.+|++.+..
T Consensus 68 p~~~~C~~CG~~~~~ 82 (135)
T PRK03824 68 EAVLKCRNCGNEWSL 82 (135)
T ss_pred ceEEECCCCCCEEec
Confidence 357899999987653
No 55
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=55.13 E-value=9.6 Score=27.24 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.5
Q ss_pred ceecCCCCcccch
Q 019598 231 TVVCLDCGFSFCR 243 (338)
Q Consensus 231 ~~qC~~C~~~~~r 243 (338)
+.+|..|++.|+-
T Consensus 1 ky~C~~CgyvYd~ 13 (47)
T PF00301_consen 1 KYQCPVCGYVYDP 13 (47)
T ss_dssp EEEETTTSBEEET
T ss_pred CcCCCCCCEEEcC
Confidence 3689999999863
No 56
>PRK08197 threonine synthase; Validated
Probab=54.80 E-value=6.6 Score=39.43 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.6
Q ss_pred CceecCCCCcccc
Q 019598 230 YTVVCLDCGFSFC 242 (338)
Q Consensus 230 ~~~qC~~C~~~~~ 242 (338)
..++|.+|+++|+
T Consensus 6 ~~~~C~~Cg~~~~ 18 (394)
T PRK08197 6 SHLECSKCGETYD 18 (394)
T ss_pred eEEEECCCCCCCC
Confidence 4589999999874
No 57
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=54.69 E-value=8.2 Score=32.40 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCcEEEEECCccccc
Q 019598 112 INQLYQFFDNSAKLIVLTGAGISTE 136 (338)
Q Consensus 112 i~~L~~~I~~Ak~IVVlTGAGISaa 136 (338)
|++++++|.+|++.|+++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999998844
No 58
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=53.51 E-value=8.7 Score=32.22 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=11.5
Q ss_pred EeecccCceecCCCCccc
Q 019598 224 ELHGTVYTVVCLDCGFSF 241 (338)
Q Consensus 224 ELHGsl~~~qC~~C~~~~ 241 (338)
+++=--...+|.+|++.+
T Consensus 63 ~i~~~p~~~~C~~Cg~~~ 80 (114)
T PRK03681 63 HLEEQEAECWCETCQQYV 80 (114)
T ss_pred EEEeeCcEEEcccCCCee
Confidence 333334467899999765
No 59
>PRK04023 DNA polymerase II large subunit; Validated
Probab=52.70 E-value=7.7 Score=43.75 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=15.0
Q ss_pred EeecccCc-----eecCCCCcccch
Q 019598 224 ELHGTVYT-----VVCLDCGFSFCR 243 (338)
Q Consensus 224 ELHGsl~~-----~qC~~C~~~~~r 243 (338)
.|-||++. .+|++|+..|-|
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR 1049 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRR 1049 (1121)
T ss_pred hhhhhhhhhcccceeecccCccccc
Confidence 45588874 689999988743
No 60
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=52.00 E-value=12 Score=25.22 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=10.1
Q ss_pred ceecCCCCcccch
Q 019598 231 TVVCLDCGFSFCR 243 (338)
Q Consensus 231 ~~qC~~C~~~~~r 243 (338)
+..|.+|+..|..
T Consensus 1 Rr~C~~Cg~~Yh~ 13 (36)
T PF05191_consen 1 RRICPKCGRIYHI 13 (36)
T ss_dssp EEEETTTTEEEET
T ss_pred CcCcCCCCCcccc
Confidence 3579999998853
No 61
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=51.91 E-value=7 Score=31.92 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=9.9
Q ss_pred CceecCCCCcccc
Q 019598 230 YTVVCLDCGFSFC 242 (338)
Q Consensus 230 ~~~qC~~C~~~~~ 242 (338)
.-.+|-+||+.+.
T Consensus 57 ~Pa~CkkCGfef~ 69 (97)
T COG3357 57 RPARCKKCGFEFR 69 (97)
T ss_pred cChhhcccCcccc
Confidence 3568999998763
No 62
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=51.86 E-value=8.4 Score=32.27 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=12.6
Q ss_pred EEeecccCceecCCCCccc
Q 019598 223 LELHGTVYTVVCLDCGFSF 241 (338)
Q Consensus 223 iELHGsl~~~qC~~C~~~~ 241 (338)
++++=--...+|.+|++.+
T Consensus 62 L~I~~vp~~~~C~~Cg~~~ 80 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVV 80 (113)
T ss_pred EEEEeeCcEEEcccCCCEE
Confidence 4444444577899999765
No 63
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=51.29 E-value=8.2 Score=44.48 Aligned_cols=20 Identities=35% Similarity=0.831 Sum_probs=15.1
Q ss_pred EeecccCc-----eecCCCCcccch
Q 019598 224 ELHGTVYT-----VVCLDCGFSFCR 243 (338)
Q Consensus 224 ELHGsl~~-----~qC~~C~~~~~r 243 (338)
.|-||++. .+|++|+..|-|
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR 1265 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRR 1265 (1337)
T ss_pred hhhhhhhhhhccceeecccCccccc
Confidence 45588874 699999988743
No 64
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=49.67 E-value=9.6 Score=31.98 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=9.6
Q ss_pred cCceecCCCCccc
Q 019598 229 VYTVVCLDCGFSF 241 (338)
Q Consensus 229 l~~~qC~~C~~~~ 241 (338)
-....|.+|++.+
T Consensus 68 p~~~~C~~Cg~~~ 80 (115)
T TIGR00100 68 PVECECEDCSEEV 80 (115)
T ss_pred CcEEEcccCCCEE
Confidence 3467899999765
No 65
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=48.98 E-value=6.7 Score=32.74 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=12.7
Q ss_pred EEeecccCceecCCCCcccc
Q 019598 223 LELHGTVYTVVCLDCGFSFC 242 (338)
Q Consensus 223 iELHGsl~~~qC~~C~~~~~ 242 (338)
++++=--...+|..|++.+.
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~ 81 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFE 81 (113)
T ss_dssp EEEEEE--EEEETTTS-EEE
T ss_pred EEEEecCCcEECCCCCCEEe
Confidence 55555556789999999874
No 66
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.97 E-value=9 Score=23.22 Aligned_cols=6 Identities=33% Similarity=1.270 Sum_probs=3.3
Q ss_pred CCCCCC
Q 019598 301 CQKCNG 306 (338)
Q Consensus 301 Cp~CgG 306 (338)
|+.||.
T Consensus 16 C~~CG~ 21 (23)
T PF13240_consen 16 CPNCGT 21 (23)
T ss_pred hhhhCC
Confidence 555554
No 67
>PLN02569 threonine synthase
Probab=46.18 E-value=12 Score=39.16 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=10.2
Q ss_pred ceecCCCCcccc
Q 019598 231 TVVCLDCGFSFC 242 (338)
Q Consensus 231 ~~qC~~C~~~~~ 242 (338)
.++|..|++.|+
T Consensus 49 ~l~C~~Cg~~y~ 60 (484)
T PLN02569 49 FLECPLTGEKYS 60 (484)
T ss_pred ccEeCCCCCcCC
Confidence 589999998874
No 68
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.73 E-value=10 Score=29.98 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=15.7
Q ss_pred CCCCCCCCCee-----ccceeecCCC
Q 019598 298 IPTCQKCNGVL-----KPDVSTSLSL 318 (338)
Q Consensus 298 iP~Cp~CgG~L-----rP~VV~FGE~ 318 (338)
+-.||.||+.| ++.|+|=|..
T Consensus 33 lt~ce~c~a~~kk~l~~vgi~fKGSG 58 (82)
T COG2331 33 LTTCEECGARLKKLLNAVGIVFKGSG 58 (82)
T ss_pred cccChhhChHHHHhhccceEEEecce
Confidence 45799999865 5788876653
No 69
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=43.42 E-value=19 Score=29.62 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHcCCcceeeecccchhHhhhCCCeEEe--ecccCceecCCCCcccchh
Q 019598 187 PNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCRD 244 (338)
Q Consensus 187 Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~kviEL--HGsl~~~qC~~C~~~~~r~ 244 (338)
....|+.|..|++.|.+..+.+.|-- ..+++ +..-.++.|..|++..+.+
T Consensus 42 ~~TVYR~L~~L~e~Gli~~~~~~~~~--------~~Y~~~~~~~h~h~iC~~Cg~v~~~~ 93 (120)
T PF01475_consen 42 LATVYRTLDLLEEAGLIRKIEFGDGE--------SRYELSTCHHHHHFICTQCGKVIDLD 93 (120)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTSE--------EEEEESSSSSCEEEEETTTS-EEEE-
T ss_pred HHHHHHHHHHHHHCCeEEEEEcCCCc--------ceEeecCCCcceEEEECCCCCEEEec
Confidence 34689999999999987665444221 22333 3455669999999986544
No 70
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.12 E-value=11 Score=30.37 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=13.5
Q ss_pred cCCcEEEEECCccccc
Q 019598 121 NSAKLIVLTGAGISTE 136 (338)
Q Consensus 121 ~Ak~IVVlTGAGISaa 136 (338)
+.++|++++|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3578999999999965
No 71
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=42.21 E-value=18 Score=31.25 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=10.7
Q ss_pred CCCCCCCCCeeccc
Q 019598 298 IPTCQKCNGVLKPD 311 (338)
Q Consensus 298 iP~Cp~CgG~LrP~ 311 (338)
...||+||....|.
T Consensus 26 p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 26 PAVSPYTGEQFPPE 39 (129)
T ss_pred CccCCCcCCccCcc
Confidence 56899999876555
No 72
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=41.20 E-value=15 Score=42.79 Aligned_cols=19 Identities=32% Similarity=0.803 Sum_probs=13.7
Q ss_pred EeecccCc-----eecCCCCcccch
Q 019598 224 ELHGTVYT-----VVCLDCGFSFCR 243 (338)
Q Consensus 224 ELHGsl~~-----~qC~~C~~~~~r 243 (338)
.|-|+++. .+| +|+..|-|
T Consensus 1530 Dl~GNLRaFsrQ~~RC-kC~~kyRR 1553 (1627)
T PRK14715 1530 DLIGNLRAFSRQEFRC-KCGAKYRR 1553 (1627)
T ss_pred hhhhhhhhhhccceee-cCCCcccc
Confidence 45588864 689 99988743
No 73
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=39.59 E-value=18 Score=29.97 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.5
Q ss_pred CCCCCCCCCeeccceeecCCCC
Q 019598 298 IPTCQKCNGVLKPDVSTSLSLI 319 (338)
Q Consensus 298 iP~Cp~CgG~LrP~VV~FGE~l 319 (338)
.-.||.||..|.|..+.-+..|
T Consensus 47 ~~~cP~Cge~~~~a~vva~taL 68 (102)
T PF04475_consen 47 DTICPKCGEELDSAFVVADTAL 68 (102)
T ss_pred cccCCCCCCccCceEEEeccce
Confidence 4689999999999998877654
No 74
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=39.30 E-value=36 Score=35.87 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.+..+++++++++|.+|++.||++|.|+.
T Consensus 184 ~~~~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 184 APDVEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECcchh
Confidence 34568999999999999999999999996
No 75
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=38.58 E-value=15 Score=34.57 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCcccccCCccccCCCCCCHHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCC
Q 019598 90 ASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147 (338)
Q Consensus 90 ~~~~~~~~~~~~p~~~~~~~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~G 147 (338)
++|=.+|+..|+...-. ...|..+.++++..-.|||--|||.|--||--.|.+.-|
T Consensus 95 i~ply~R~aiIlvkkgN--PknIk~~eDll~~gi~ivV~dGaG~sntsgtgvwED~ag 150 (252)
T COG4588 95 IQPLYLRPAIILVKKGN--PKNIKGFEDLLKPGIGIVVNDGAGVSNTSGTGVWEDIAG 150 (252)
T ss_pred cceeeeeceEEEecCCC--ccccccHHHHhcCCceEEEeCCCcccCCCCceehHhhhc
Confidence 34446666666655433 356788889999999999999999999999755555443
No 76
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=38.53 E-value=21 Score=25.90 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.4
Q ss_pred ceecCCCCccc
Q 019598 231 TVVCLDCGFSF 241 (338)
Q Consensus 231 ~~qC~~C~~~~ 241 (338)
...|..|+..+
T Consensus 6 ~Y~C~~Cg~~~ 16 (49)
T COG1996 6 EYKCARCGREV 16 (49)
T ss_pred EEEhhhcCCee
Confidence 45799999865
No 77
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=38.52 E-value=14 Score=30.58 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=12.1
Q ss_pred CcEEEEECCccccc
Q 019598 123 AKLIVLTGAGISTE 136 (338)
Q Consensus 123 k~IVVlTGAGISaa 136 (338)
++|++++|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 47999999999866
No 78
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=38.44 E-value=13 Score=24.72 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=10.1
Q ss_pred CCCCCCCeeccc
Q 019598 300 TCQKCNGVLKPD 311 (338)
Q Consensus 300 ~Cp~CgG~LrP~ 311 (338)
=||.||.+|.|.
T Consensus 3 FCp~C~nlL~p~ 14 (35)
T PF02150_consen 3 FCPECGNLLYPK 14 (35)
T ss_dssp BETTTTSBEEEE
T ss_pred eCCCCCccceEc
Confidence 399999999874
No 79
>PRK07524 hypothetical protein; Provisional
Probab=38.26 E-value=32 Score=35.76 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..++++++.++|.+|++.||++|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 186 PAPAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCChH
Confidence 4568899999999999999999999985
No 80
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=38.21 E-value=12 Score=28.82 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=15.3
Q ss_pred EeecccCceecCCCCcc
Q 019598 224 ELHGTVYTVVCLDCGFS 240 (338)
Q Consensus 224 ELHGsl~~~qC~~C~~~ 240 (338)
+.+|.+-+++|.+|+++
T Consensus 12 ~p~s~Fl~VkCpdC~N~ 28 (67)
T COG2051 12 EPRSRFLRVKCPDCGNE 28 (67)
T ss_pred CCCceEEEEECCCCCCE
Confidence 78899999999999986
No 81
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=37.92 E-value=16 Score=28.18 Aligned_cols=13 Identities=46% Similarity=0.894 Sum_probs=10.9
Q ss_pred cEEEEECCccccc
Q 019598 124 KLIVLTGAGISTE 136 (338)
Q Consensus 124 ~IVVlTGAGISaa 136 (338)
+|++.+|+|+|++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5889999999876
No 82
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=37.77 E-value=25 Score=24.70 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.1
Q ss_pred CCCCCCCCCe
Q 019598 298 IPTCQKCNGV 307 (338)
Q Consensus 298 iP~Cp~CgG~ 307 (338)
.-+||.||..
T Consensus 19 ~irC~~CG~r 28 (44)
T smart00659 19 VVRCRECGYR 28 (44)
T ss_pred ceECCCCCce
Confidence 4699999974
No 83
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=37.68 E-value=42 Score=35.53 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 193 ~~~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 193 PYDEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECcchH
Confidence 4568899999999999999999999985
No 84
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=37.32 E-value=18 Score=29.32 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCcEEEEECCcccccCC
Q 019598 111 DINQLYQFFDNSAKLIVLTGAGISTECG 138 (338)
Q Consensus 111 ~i~~L~~~I~~Ak~IVVlTGAGISaaSG 138 (338)
+++++++.|.++++ |+++|.|.|...+
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a 28 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHH
Confidence 57889999999875 7888999887654
No 85
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=37.27 E-value=21 Score=37.47 Aligned_cols=119 Identities=10% Similarity=0.187 Sum_probs=78.3
Q ss_pred ccccccccccc--------cc-ccceecchHHHHHhhhcccceeecCC--ccceeeeee----eeecCCCCCCCCCCCCC
Q 019598 25 SASRNSSGMLA--------RV-KSEIVQSSIKAQQLLSKGRRVFPHQG--SVKFVQTSW----RMSIPGLPSSRHEDKAP 89 (338)
Q Consensus 25 ~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~ 89 (338)
-++|.--+||- ++ +.|-+.|-|.-|+-+++--.|++..- ..-|+-|+- .+.+|.. -+.+.-+
T Consensus 120 fA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QD--Vq~eA~D- 196 (617)
T COG3962 120 FATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQD--VQAEAYD- 196 (617)
T ss_pred hcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechh--hhhhhcC-
Confidence 47888888873 33 34778999999999999999987632 233444332 3444433 1111111
Q ss_pred CCcccccCCccccCCCCCCHHHHHHHHHHHhcCCcEEEEECCcc------------cccCCCCCccCCC
Q 019598 90 ASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGI------------STECGIPDYRSPN 146 (338)
Q Consensus 90 ~~~~~~~~~~~~p~~~~~~~~~i~~L~~~I~~Ak~IVVlTGAGI------------SaaSGIPdFR~~~ 146 (338)
-+-.++-++.....-.+|+...++.++++|+.|++-||+.|.|+ +-..|||--....
T Consensus 197 yp~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQa 265 (617)
T COG3962 197 YPESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQA 265 (617)
T ss_pred CcHHhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccC
Confidence 01235555555566677778999999999999999999999996 4456888655443
No 86
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=37.07 E-value=29 Score=36.03 Aligned_cols=21 Identities=10% Similarity=0.157 Sum_probs=16.4
Q ss_pred eEEeecccCceecCCCCcccc
Q 019598 222 PLELHGTVYTVVCLDCGFSFC 242 (338)
Q Consensus 222 viELHGsl~~~qC~~C~~~~~ 242 (338)
+..--+....++|..|++.|+
T Consensus 416 ~~~~~~~~~~~~c~~c~~~yd 436 (479)
T PRK05452 416 ATTTADLGPRMQCSVCQWIYD 436 (479)
T ss_pred cccccCCCCeEEECCCCeEEC
Confidence 345556778899999999985
No 87
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=37.04 E-value=20 Score=32.70 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.9
Q ss_pred CCCCCCCeecc
Q 019598 300 TCQKCNGVLKP 310 (338)
Q Consensus 300 ~Cp~CgG~LrP 310 (338)
-||.||+.++=
T Consensus 155 ~Cp~CG~~~~~ 165 (177)
T COG1439 155 FCPICGSPLKR 165 (177)
T ss_pred cCCCCCCceEE
Confidence 69999998653
No 88
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=36.87 E-value=21 Score=40.58 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCeecc
Q 019598 296 FHIPTCQKCNGVLKP 310 (338)
Q Consensus 296 ~~iP~Cp~CgG~LrP 310 (338)
+.+-.||.|||.|.+
T Consensus 836 ~~~~~~~~~~~~~~~ 850 (1006)
T PRK12775 836 FPYGMCPACGGKLQA 850 (1006)
T ss_pred CCcCcCcccccchhh
Confidence 345589999998654
No 89
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=36.80 E-value=43 Score=35.38 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.+..+.+++++++|.+|++.||++|.|+-
T Consensus 201 ~~~~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 201 KPTIKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 34567899999999999999999999994
No 90
>PRK07586 hypothetical protein; Validated
Probab=36.46 E-value=43 Score=34.58 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
.+..+++++++++|.+|++-||+.|.|+..
T Consensus 181 ~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~ 210 (514)
T PRK07586 181 AVDPAAVEAAAAALRSGEPTVLLLGGRALR 210 (514)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 345688999999999999999999999863
No 91
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=36.20 E-value=36 Score=32.39 Aligned_cols=31 Identities=23% Similarity=0.665 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHhcC-CcEEEEECCccccc
Q 019598 106 PPSIEDINQLYQFFDNS-AKLIVLTGAGISTE 136 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~A-k~IVVlTGAGISaa 136 (338)
.+-.+.+..|++++..| ++|+|+.||||..+
T Consensus 152 ~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~ 183 (241)
T COG3142 152 ASALEGLDLLKRLIEQAKGRIIIMAGAGVRAE 183 (241)
T ss_pred CchhhhHHHHHHHHHHhcCCEEEEeCCCCCHH
Confidence 33457789999999887 89999999999865
No 92
>PRK14873 primosome assembly protein PriA; Provisional
Probab=36.07 E-value=28 Score=37.82 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=11.2
Q ss_pred ecccCceecCCCCcc
Q 019598 226 HGTVYTVVCLDCGFS 240 (338)
Q Consensus 226 HGsl~~~qC~~C~~~ 240 (338)
-|....+.|.+|++.
T Consensus 378 rGyap~l~C~~Cg~~ 392 (665)
T PRK14873 378 RGYVPSLACARCRTP 392 (665)
T ss_pred CCCCCeeEhhhCcCe
Confidence 477777788888765
No 93
>PRK03922 hypothetical protein; Provisional
Probab=35.99 E-value=22 Score=30.04 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=18.4
Q ss_pred CCCCCCCCCeeccceeecCCCC
Q 019598 298 IPTCQKCNGVLKPDVSTSLSLI 319 (338)
Q Consensus 298 iP~Cp~CgG~LrP~VV~FGE~l 319 (338)
.-.||.||..+.|..+.-+..|
T Consensus 49 ~~~cP~cge~~~~afvvA~taL 70 (113)
T PRK03922 49 LTICPKCGEPFDSAFVVADTAL 70 (113)
T ss_pred cccCCCCCCcCCcEEEEeccce
Confidence 4589999999999998877654
No 94
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=35.97 E-value=16 Score=24.16 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=7.4
Q ss_pred cccCceecCCCCcc
Q 019598 227 GTVYTVVCLDCGFS 240 (338)
Q Consensus 227 Gsl~~~qC~~C~~~ 240 (338)
|.+..-+|.+|+..
T Consensus 7 ~~l~~~rC~~Cg~~ 20 (37)
T PF12172_consen 7 GRLLGQRCRDCGRV 20 (37)
T ss_dssp T-EEEEE-TTT--E
T ss_pred CEEEEEEcCCCCCE
Confidence 55666788889875
No 95
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=35.87 E-value=35 Score=30.82 Aligned_cols=23 Identities=4% Similarity=0.146 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCcEEEEECCcccc
Q 019598 113 NQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 113 ~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+.++++|++|++-|++.|.|+..
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccc
Confidence 57899999999999999999986
No 96
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=35.22 E-value=43 Score=35.56 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+.+++++++|.+|++.||+.|.|+..
T Consensus 216 p~~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 216 PHGKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 45678999999999999999999999943
No 97
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=35.19 E-value=45 Score=35.04 Aligned_cols=28 Identities=14% Similarity=0.510 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||++|.|+-
T Consensus 198 ~~~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 198 PAPEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 4568899999999999999999999995
No 98
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=35.12 E-value=25 Score=26.48 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=14.5
Q ss_pred CCCCCCCCCCeeccceee
Q 019598 297 HIPTCQKCNGVLKPDVST 314 (338)
Q Consensus 297 ~iP~Cp~CgG~LrP~VV~ 314 (338)
..|.||-|++.|+..+-+
T Consensus 38 ~~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSGTRM 55 (59)
T ss_pred CCccCCCcCCccccceee
Confidence 369999999999876643
No 99
>PRK06154 hypothetical protein; Provisional
Probab=35.04 E-value=48 Score=34.97 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCccccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGISaa 136 (338)
.+..+.+++++++|.+|++.||++|.|+..+
T Consensus 198 ~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 198 GADPVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 3456789999999999999999999999743
No 100
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=34.97 E-value=41 Score=35.75 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.+..+++++++++|++|++.||+.|.|+.
T Consensus 208 ~~~~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 208 KGNPRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 35578999999999999999999999995
No 101
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=34.76 E-value=50 Score=34.37 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+.+++++++|.+|++.||+.|.|+..
T Consensus 180 ~~~~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 180 APDDAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 34568999999999999999999999954
No 102
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.50 E-value=22 Score=36.66 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=9.9
Q ss_pred CceecCCCCcccc
Q 019598 230 YTVVCLDCGFSFC 242 (338)
Q Consensus 230 ~~~qC~~C~~~~~ 242 (338)
....|..|++.++
T Consensus 6 t~f~C~~CG~~s~ 18 (456)
T COG1066 6 TAFVCQECGYVSP 18 (456)
T ss_pred cEEEcccCCCCCc
Confidence 4578999998763
No 103
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.20 E-value=50 Score=35.02 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+.+++++++|.+|++.||++|.|+..
T Consensus 197 ~~~~~l~~a~~~L~~A~rPvil~G~g~~~ 225 (595)
T PRK09107 197 GDAEAITEAVELLANAKRPVIYSGGGVIN 225 (595)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCcccc
Confidence 45678999999999999999999999853
No 104
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=34.00 E-value=20 Score=28.86 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=11.3
Q ss_pred cEEEEECCccccc
Q 019598 124 KLIVLTGAGISTE 136 (338)
Q Consensus 124 ~IVVlTGAGISaa 136 (338)
+|++++|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4899999999876
No 105
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.92 E-value=45 Score=35.27 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+.+++++++|.+|++.||+.|.|+..
T Consensus 206 ~~~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 206 GHSGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 35678999999999999999999999963
No 106
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.86 E-value=24 Score=29.57 Aligned_cols=22 Identities=14% Similarity=0.413 Sum_probs=17.5
Q ss_pred CCCCCCCCCeeccceeecCCCC
Q 019598 298 IPTCQKCNGVLKPDVSTSLSLI 319 (338)
Q Consensus 298 iP~Cp~CgG~LrP~VV~FGE~l 319 (338)
.-.||+||..+.+..+--+..|
T Consensus 49 ~t~CP~Cg~~~e~~fvva~~aL 70 (115)
T COG1885 49 STSCPKCGEPFESAFVVANTAL 70 (115)
T ss_pred cccCCCCCCccceeEEEeccee
Confidence 4689999999998877766654
No 107
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=33.60 E-value=45 Score=35.36 Aligned_cols=29 Identities=10% Similarity=0.425 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+++++++++|.+|++.||++|.|+..
T Consensus 187 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 187 ATRAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 35678999999999999999999999874
No 108
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.34 E-value=47 Score=34.94 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISaa 136 (338)
+..+.+++++++|.+|++.||+.|.|+..+
T Consensus 191 ~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 191 GHKGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 346789999999999999999999999644
No 109
>PRK07064 hypothetical protein; Provisional
Probab=33.18 E-value=50 Score=34.28 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.+..+.++++.++|.+|++.||++|.|+.
T Consensus 187 ~~~~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 187 EPDAAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCChH
Confidence 34568899999999999999999999984
No 110
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=32.03 E-value=50 Score=34.78 Aligned_cols=29 Identities=10% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+....+++++++|.+|++.||++|.|+..
T Consensus 181 ~~~~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 181 GGATSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 35678999999999999999999999864
No 111
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=31.88 E-value=26 Score=29.16 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=12.4
Q ss_pred CcEEEEECCccccc
Q 019598 123 AKLIVLTGAGISTE 136 (338)
Q Consensus 123 k~IVVlTGAGISaa 136 (338)
++|+++++||+||+
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 57999999999975
No 112
>PRK08617 acetolactate synthase; Reviewed
Probab=31.61 E-value=57 Score=34.04 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 186 ASPEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3456899999999999999999999985
No 113
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=31.61 E-value=65 Score=31.76 Aligned_cols=46 Identities=24% Similarity=0.576 Sum_probs=32.2
Q ss_pred CccccCCCCCCHHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCC
Q 019598 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYS 150 (338)
Q Consensus 98 ~~~~p~~~~~~~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~ 150 (338)
++.+|.+.|-..-.++.++.+++ +.++||.+|.| |||..+..+| |.
T Consensus 160 RRVVpSP~P~~IvE~~~Ik~L~~-~g~vVI~~GGG-----GIPVv~~~~~-~~ 205 (312)
T COG0549 160 RRVVPSPKPVRIVEAEAIKALLE-SGHVVIAAGGG-----GIPVVEEGAG-LQ 205 (312)
T ss_pred eEecCCCCCccchhHHHHHHHHh-CCCEEEEeCCC-----CcceEecCCC-cc
Confidence 35677766655555555555554 58899999987 9999998776 54
No 114
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=31.56 E-value=24 Score=23.97 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.3
Q ss_pred CCCCCCCeecccee
Q 019598 300 TCQKCNGVLKPDVS 313 (338)
Q Consensus 300 ~Cp~CgG~LrP~VV 313 (338)
.||.||+.|.----
T Consensus 3 ~CP~Cg~~lv~r~~ 16 (39)
T PF01396_consen 3 KCPKCGGPLVLRRG 16 (39)
T ss_pred CCCCCCceeEEEEC
Confidence 69999988764433
No 115
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=31.49 E-value=33 Score=39.76 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCcEEEEECC
Q 019598 112 INQLYQFFDNSAKLIVLTGA 131 (338)
Q Consensus 112 i~~L~~~I~~Ak~IVVlTGA 131 (338)
++.|.++=++..++|+.||.
T Consensus 718 ~k~li~~g~~l~K~Vvatgn 737 (1444)
T COG2176 718 IKKLIKLGKKLNKPVVATGN 737 (1444)
T ss_pred HHHHHHHHHHhCCcEEEeCC
Confidence 44444444567888888875
No 116
>PRK12474 hypothetical protein; Provisional
Probab=31.23 E-value=56 Score=33.89 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++-||+.|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 186 VAAETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4568899999999999999999999985
No 117
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=31.03 E-value=46 Score=29.78 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCcEEEEECCccc
Q 019598 113 NQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 113 ~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+.++++|++|++.|++.|.|+.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcC
Confidence 6889999999999999999997
No 118
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=31.01 E-value=55 Score=34.44 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+++++++++|++|++.||+.|.|+..
T Consensus 205 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 205 PDPEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 45688999999999999999999999964
No 119
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.99 E-value=23 Score=29.15 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.4
Q ss_pred CcEEEEECCccccc
Q 019598 123 AKLIVLTGAGISTE 136 (338)
Q Consensus 123 k~IVVlTGAGISaa 136 (338)
++|++++|+|+|++
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 57999999999976
No 120
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=30.97 E-value=31 Score=31.43 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=22.7
Q ss_pred eeeecccchhHhhh-CCC--eEEee---cccC--ceecCCCCcccchh
Q 019598 205 CMITQNVDRLHHRA-GSN--PLELH---GTVY--TVVCLDCGFSFCRD 244 (338)
Q Consensus 205 ~ViTQNID~Lh~rA-G~k--viELH---Gsl~--~~qC~~C~~~~~r~ 244 (338)
+++--|+-+--++. ++. ++|-- |.+. +|.|.+|+....+.
T Consensus 86 fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d~~~wyc~~c~~~~~e~ 133 (177)
T PRK13264 86 FLLPPHVPHSPQREAGSIGLVIERKRPEGELDGFQWYCDECNHKVHEV 133 (177)
T ss_pred EEeCCCCCcCCccCCCeEEEEEEeCCCCCCccceEEECCCCCCeEEEE
Confidence 56666766555443 221 34443 3333 47899999875443
No 121
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=30.97 E-value=55 Score=33.14 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc-----------cCCCCCccCC
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST-----------ECGIPDYRSP 145 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa-----------aSGIPdFR~~ 145 (338)
+..+.++++++.|.+|++.||+.|.|+.. ..|+|.+-+.
T Consensus 196 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~ 245 (432)
T TIGR00173 196 LDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADP 245 (432)
T ss_pred CChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeC
Confidence 44578999999999999999999999863 3567766543
No 122
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=30.81 E-value=55 Score=34.41 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+....+++++++|.+|++.||+.|.|+..
T Consensus 195 ~~~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 195 PNDMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 34678999999999999999999999953
No 123
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=30.80 E-value=1.2e+02 Score=32.11 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCccccc
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTE 136 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaa 136 (338)
..+|+++.++|++||+-+++.|.|---+
T Consensus 204 ~s~i~~av~llk~AKrPLlvvGkgAa~~ 231 (571)
T KOG1185|consen 204 PSQIQKAVQLLKSAKRPLLVVGKGAAYA 231 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecccccC
Confidence 6899999999999998555555554433
No 124
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=30.71 E-value=60 Score=34.10 Aligned_cols=28 Identities=14% Similarity=0.474 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+...++++++++|.+|++.||++|.|+.
T Consensus 198 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 198 PAPQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4467899999999999999999999975
No 125
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.56 E-value=55 Score=34.55 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+.+++++++|.+|++.||+.|.|+..
T Consensus 199 ~~~~~~~~~~~~L~~A~rPvIl~G~g~~~ 227 (570)
T PRK06725 199 PDSMKLREVAKAISKAKRPLLYIGGGVIH 227 (570)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCccc
Confidence 45678999999999999999999999953
No 126
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=30.46 E-value=66 Score=33.44 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.+..+.+++++++|.+|++.||+.|.|..
T Consensus 190 ~~~~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 190 RPDPAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 34567899999999999999999999985
No 127
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=30.25 E-value=20 Score=23.84 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=6.5
Q ss_pred CCCCCCCeecccee
Q 019598 300 TCQKCNGVLKPDVS 313 (338)
Q Consensus 300 ~Cp~CgG~LrP~VV 313 (338)
-||.||+.|.-.|.
T Consensus 2 fC~~CG~~l~~~ip 15 (34)
T PF14803_consen 2 FCPQCGGPLERRIP 15 (34)
T ss_dssp B-TTT--B-EEE--
T ss_pred ccccccChhhhhcC
Confidence 49999999887766
No 128
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=30.25 E-value=63 Score=33.87 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.++++++.|.+|++.||++|.|+-
T Consensus 192 ~~~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 192 IDRLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 4467899999999999999999999995
No 129
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=30.21 E-value=61 Score=33.79 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 181 ~~~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 181 FPAAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 4567899999999999999999999985
No 130
>PRK11269 glyoxylate carboligase; Provisional
Probab=29.91 E-value=55 Score=34.62 Aligned_cols=28 Identities=11% Similarity=0.447 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (591)
T PRK11269 188 ATRAQIEKALEMLNAAERPLIVAGGGVI 215 (591)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 3567899999999999999999999985
No 131
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.91 E-value=85 Score=26.93 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=34.3
Q ss_pred cCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCCeEEee--cccCceecCCCCcccch
Q 019598 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (338)
Q Consensus 184 ~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~kviELH--Gsl~~~qC~~C~~~~~r 243 (338)
...+.-.|+.|..|++.|.+..+-..|- ...+++. +.-.++.|..|+...+.
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~--------~~~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGG--------KSVFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCC--------cEEEEeCCCCCCCceEECCCCCEEEe
Confidence 3456788999999999998866654441 1123321 12246899999998654
No 132
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.68 E-value=55 Score=26.42 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=34.6
Q ss_pred cCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCCeEEee--cccCceecCCCCcccch
Q 019598 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (338)
Q Consensus 184 ~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~kviELH--Gsl~~~qC~~C~~~~~r 243 (338)
...+...|+.|..|++.|.+..+-..|- ...+++. ..-.+..|.+|+...+.
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~~--------~~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGDG--------KARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCCC--------ceEEEeCCCCCCCceEeCCCCCEEEe
Confidence 3456788999999999998876544431 1122221 22346999999998654
No 133
>PRK08322 acetolactate synthase; Reviewed
Probab=29.65 E-value=67 Score=33.38 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||++|.|+.
T Consensus 181 ~~~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 181 ASPKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 3467899999999999999999999985
No 134
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.61 E-value=56 Score=34.41 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 108 ~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
..+.+++++++|.+|++.||++|.|+.
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 192 HKGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 467899999999999999999999995
No 135
>PLN02470 acetolactate synthase
Probab=29.58 E-value=55 Score=34.52 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||++|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 200 PEKSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCChh
Confidence 4567899999999999999999999985
No 136
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.57 E-value=32 Score=29.25 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=8.2
Q ss_pred CceecCCCCccc
Q 019598 230 YTVVCLDCGFSF 241 (338)
Q Consensus 230 ~~~qC~~C~~~~ 241 (338)
...+| +|++.+
T Consensus 69 ~~~~C-~Cg~~~ 79 (124)
T PRK00762 69 VEIEC-ECGYEG 79 (124)
T ss_pred eeEEe-eCcCcc
Confidence 36789 999765
No 137
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=29.12 E-value=38 Score=21.16 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=7.4
Q ss_pred CCCCCCCCCe
Q 019598 298 IPTCQKCNGV 307 (338)
Q Consensus 298 iP~Cp~CgG~ 307 (338)
.-.||.||-.
T Consensus 14 ~~~Cp~CG~~ 23 (26)
T PF10571_consen 14 AKFCPHCGYD 23 (26)
T ss_pred cCcCCCCCCC
Confidence 3579999854
No 138
>PRK11823 DNA repair protein RadA; Provisional
Probab=28.92 E-value=31 Score=35.52 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=8.4
Q ss_pred ceecCCCCcccc
Q 019598 231 TVVCLDCGFSFC 242 (338)
Q Consensus 231 ~~qC~~C~~~~~ 242 (338)
..+|.+||+.+.
T Consensus 7 ~y~C~~Cg~~~~ 18 (446)
T PRK11823 7 AYVCQECGAESP 18 (446)
T ss_pred eEECCcCCCCCc
Confidence 467888887653
No 139
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.89 E-value=60 Score=34.02 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISaa 136 (338)
+..+.+++++++|.+|++.||++|.|+..+
T Consensus 188 ~~~~~i~~~~~~L~~A~rPviv~G~g~~~~ 217 (563)
T PRK08527 188 GNSRQIKKAAEAIKEAKKPLFYLGGGAILS 217 (563)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 346789999999999999999999999643
No 140
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.86 E-value=31 Score=36.07 Aligned_cols=15 Identities=27% Similarity=0.833 Sum_probs=10.1
Q ss_pred ecccCceecCCCCcc
Q 019598 226 HGTVYTVVCLDCGFS 240 (338)
Q Consensus 226 HGsl~~~qC~~C~~~ 240 (338)
-|....+.|..|++.
T Consensus 208 rGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 208 RGYSKNLLCRSCGYI 222 (505)
T ss_pred CcCCCeeEhhhCcCc
Confidence 466666777777765
No 141
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=28.70 E-value=24 Score=22.95 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=3.5
Q ss_pred CCCCCCCCCe
Q 019598 298 IPTCQKCNGV 307 (338)
Q Consensus 298 iP~Cp~CgG~ 307 (338)
+|+||.|+..
T Consensus 2 ~p~Cp~C~se 11 (30)
T PF08274_consen 2 LPKCPLCGSE 11 (30)
T ss_dssp S---TTT---
T ss_pred CCCCCCCCCc
Confidence 6899999853
No 142
>PRK05858 hypothetical protein; Provisional
Probab=28.65 E-value=74 Score=33.19 Aligned_cols=29 Identities=7% Similarity=0.348 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.+..+.+++++++|.+|++.||+.|.|+.
T Consensus 187 ~~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (542)
T PRK05858 187 TPDPDALARAAGLLAEAQRPVIMAGTDVW 215 (542)
T ss_pred CCCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 34567899999999999999999999985
No 143
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=28.56 E-value=27 Score=35.34 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=12.9
Q ss_pred ecccCceecCCCCccc
Q 019598 226 HGTVYTVVCLDCGFSF 241 (338)
Q Consensus 226 HGsl~~~qC~~C~~~~ 241 (338)
-|-++.--|.+|+..+
T Consensus 235 ~GKYh~~~c~~C~~~~ 250 (374)
T TIGR00375 235 LGKYHQTACEACGEPA 250 (374)
T ss_pred CCccchhhhcccCCcC
Confidence 3888888999998754
No 144
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.34 E-value=70 Score=33.45 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||+.|.|..
T Consensus 189 ~~~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 189 PGAADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4467899999999999999999999985
No 145
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=28.28 E-value=28 Score=31.71 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=9.1
Q ss_pred CCCCCCCCeec
Q 019598 299 PTCQKCNGVLK 309 (338)
Q Consensus 299 P~Cp~CgG~Lr 309 (338)
-.||.||+.|.
T Consensus 133 F~Cp~Cg~~L~ 143 (176)
T COG1675 133 FTCPKCGEDLE 143 (176)
T ss_pred CCCCCCCchhh
Confidence 48999999864
No 146
>PRK08611 pyruvate oxidase; Provisional
Probab=28.26 E-value=72 Score=33.63 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+++++++++|.+|++.||+.|.|+.
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 188 PKPKDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcCcc
Confidence 4567899999999999999999999985
No 147
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=28.04 E-value=68 Score=33.63 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+.+++++++|.+|++.||++|.|+..
T Consensus 196 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 224 (564)
T PRK08155 196 FDEESIRDAAAMINAAKRPVLYLGGGVIN 224 (564)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 44578999999999999999999999963
No 148
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=27.93 E-value=39 Score=31.78 Aligned_cols=16 Identities=25% Similarity=0.679 Sum_probs=10.6
Q ss_pred eecCCCCcccchhhHH
Q 019598 232 VVCLDCGFSFCRDLFQ 247 (338)
Q Consensus 232 ~qC~~C~~~~~r~~~~ 247 (338)
.+|-+|+-.|.+..++
T Consensus 195 ~rCg~c~i~~h~~c~q 210 (235)
T KOG4718|consen 195 IRCGSCNIQYHRGCIQ 210 (235)
T ss_pred eccCcccchhhhHHHH
Confidence 4687887777665443
No 149
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=27.42 E-value=39 Score=30.47 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.6
Q ss_pred ceecCCCCccc
Q 019598 231 TVVCLDCGFSF 241 (338)
Q Consensus 231 ~~qC~~C~~~~ 241 (338)
.|.|..||+..
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 89999999864
No 150
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=27.37 E-value=61 Score=33.86 Aligned_cols=28 Identities=18% Similarity=0.549 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++-||+.|.|+.
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 191 PSPDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4568899999999999999999999986
No 151
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.22 E-value=64 Score=33.72 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 108 ~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
....+++++++|.+|++.||++|.|.-
T Consensus 187 ~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 187 HPLQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 456799999999999999999999985
No 152
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=27.16 E-value=56 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCcEEEEE
Q 019598 110 EDINQLYQFFDNSAKLIVLT 129 (338)
Q Consensus 110 ~~i~~L~~~I~~Ak~IVVlT 129 (338)
..++.+.+.|++|++|+|+|
T Consensus 134 ~Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 134 NTIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp -SHHHHHHHHHH-SSEEEEE
T ss_pred CcHHHHHHHHHhcCceEEeC
Confidence 44888999999999999998
No 153
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=26.84 E-value=31 Score=25.74 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=9.6
Q ss_pred CCCCCCCCeecc
Q 019598 299 PTCQKCNGVLKP 310 (338)
Q Consensus 299 P~Cp~CgG~LrP 310 (338)
-.||+|||.|-+
T Consensus 42 ~~CPNCgGelv~ 53 (57)
T PF06906_consen 42 GVCPNCGGELVR 53 (57)
T ss_pred CcCcCCCCcccc
Confidence 479999998754
No 154
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=26.83 E-value=25 Score=33.58 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=7.6
Q ss_pred CCCCCCCCC
Q 019598 298 IPTCQKCNG 306 (338)
Q Consensus 298 iP~Cp~CgG 306 (338)
.-+|++|||
T Consensus 183 ~g~c~kcg~ 191 (253)
T COG1933 183 DGKCPICGG 191 (253)
T ss_pred cccccccCC
Confidence 358999999
No 155
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=26.71 E-value=74 Score=28.73 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=29.4
Q ss_pred CccccCC-CCCCHHHHHHHHHHHhcCCcEEEEECCcccccCCCCC
Q 019598 98 KKAVPDA-DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPD 141 (338)
Q Consensus 98 ~~~~p~~-~~~~~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPd 141 (338)
+.|+.++ ..+..+.-++|++.++.++.++|+.||- -|||.
T Consensus 95 ~lIvtdPkG~~is~vk~~L~~~~r~~~eV~v~iGSR----eGiP~ 135 (173)
T PF14419_consen 95 PLIVTDPKGDPISEVKDKLAEDLRYAKEVVVFIGSR----EGIPR 135 (173)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcc----cCCCh
Confidence 3445554 3444566789999999999999999975 47774
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.63 E-value=32 Score=37.40 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.4
Q ss_pred CC-CeEEeecccCceecCCCCcc
Q 019598 219 GS-NPLELHGTVYTVVCLDCGFS 240 (338)
Q Consensus 219 G~-kviELHGsl~~~qC~~C~~~ 240 (338)
|+ .++.++-.=...+|.+|+-.
T Consensus 379 Gyap~l~C~~Cg~~~~C~~C~~~ 401 (665)
T PRK14873 379 GYVPSLACARCRTPARCRHCTGP 401 (665)
T ss_pred CCCCeeEhhhCcCeeECCCCCCc
Confidence 55 57899999999999999864
No 157
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=26.63 E-value=32 Score=24.15 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=8.0
Q ss_pred CCCCCCCeec
Q 019598 300 TCQKCNGVLK 309 (338)
Q Consensus 300 ~Cp~CgG~Lr 309 (338)
+||.||+.++
T Consensus 1 ~CP~Cg~~a~ 10 (47)
T PF04606_consen 1 RCPHCGSKAR 10 (47)
T ss_pred CcCCCCCeeE
Confidence 5999998764
No 158
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=26.59 E-value=68 Score=33.88 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 108 ~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
....+++++++|.+|++.||++|.|+.
T Consensus 186 ~~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 186 GEQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 467899999999999999999999985
No 159
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=26.17 E-value=73 Score=33.40 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
+..+.+++++++|.+|++.||+.|.|...
T Consensus 192 ~~~~~i~~~a~~L~~AkrPvil~G~g~~~ 220 (561)
T PRK06048 192 GNPQQIKRAAELIMKAERPIIYAGGGVIS 220 (561)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 34578999999999999999999999963
No 160
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.99 E-value=41 Score=32.34 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=12.9
Q ss_pred eEEeecc----cCceecCCCCcccc
Q 019598 222 PLELHGT----VYTVVCLDCGFSFC 242 (338)
Q Consensus 222 viELHGs----l~~~qC~~C~~~~~ 242 (338)
+-.|+|. .++++|+-|+..+.
T Consensus 184 ~s~l~~~~~~G~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 184 LSVLRGGEREGKRYLHCSLCGTEWR 208 (290)
T ss_dssp EEEEE------EEEEEETTT--EEE
T ss_pred eEEEecCCCCccEEEEcCCCCCeee
Confidence 4566654 58999999998864
No 161
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=25.87 E-value=68 Score=33.89 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|++|++.||+.|.|+.
T Consensus 186 ~~~~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 186 PDPAEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchH
Confidence 4567899999999999999999999984
No 162
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=25.82 E-value=58 Score=21.38 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=7.2
Q ss_pred CCCCCCCCCe
Q 019598 298 IPTCQKCNGV 307 (338)
Q Consensus 298 iP~Cp~CgG~ 307 (338)
.-+|+.||..
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 4599999964
No 163
>PRK08266 hypothetical protein; Provisional
Probab=25.78 E-value=81 Score=32.78 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.++++++.|.+|++.||+.|.|.+
T Consensus 190 ~~~~~i~~~~~~L~~AkrPvIv~G~g~~ 217 (542)
T PRK08266 190 PDPDAIAAAAALIAAAKNPMIFVGGGAA 217 (542)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCChh
Confidence 4567899999999999999999999964
No 164
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=25.48 E-value=77 Score=33.44 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||++|.|.-
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 188 GHPLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 3467899999999999999999999984
No 165
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=25.16 E-value=74 Score=33.41 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+....+++++++|.+|++.||+.|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 200 PNLLQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 3567799999999999999999999975
No 166
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=25.04 E-value=44 Score=39.56 Aligned_cols=12 Identities=50% Similarity=0.969 Sum_probs=9.8
Q ss_pred CCCCCCCeeccc
Q 019598 300 TCQKCNGVLKPD 311 (338)
Q Consensus 300 ~Cp~CgG~LrP~ 311 (338)
.||+||..|+-+
T Consensus 935 ~Cp~Cg~~~~kd 946 (1437)
T PRK00448 935 DCPKCGTKLKKD 946 (1437)
T ss_pred cCcccccccccc
Confidence 699999887754
No 167
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=24.94 E-value=89 Score=32.65 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCcEEEEECCccc
Q 019598 110 EDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 110 ~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.+++.++++|++|++.||++|.|+.
T Consensus 183 ~~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 183 IDFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchh
Confidence 5789999999999999999999974
No 168
>PRK05580 primosome assembly protein PriA; Validated
Probab=24.62 E-value=1.1e+02 Score=33.18 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=12.9
Q ss_pred ecccCceecCCCCcc
Q 019598 226 HGTVYTVVCLDCGFS 240 (338)
Q Consensus 226 HGsl~~~qC~~C~~~ 240 (338)
.|....+.|..|++.
T Consensus 376 rGy~~~~~C~~Cg~~ 390 (679)
T PRK05580 376 RGYAPFLLCRDCGWV 390 (679)
T ss_pred CCCCCceEhhhCcCc
Confidence 588889999999976
No 169
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.55 E-value=60 Score=33.94 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=7.1
Q ss_pred CCCCCCCCe
Q 019598 299 PTCQKCNGV 307 (338)
Q Consensus 299 P~Cp~CgG~ 307 (338)
..||.||+.
T Consensus 254 ~~Cp~C~s~ 262 (505)
T TIGR00595 254 KTCPQCGSE 262 (505)
T ss_pred CCCCCCCCC
Confidence 489999873
No 170
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.54 E-value=73 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=15.5
Q ss_pred hhCCCeEEeecccCceecCCCCcc
Q 019598 217 RAGSNPLELHGTVYTVVCLDCGFS 240 (338)
Q Consensus 217 rAG~kviELHGsl~~~qC~~C~~~ 240 (338)
+.|..|+++.=.+..-.|+.|+..
T Consensus 14 ~~G~~v~~v~~~~TSq~C~~CG~~ 37 (69)
T PF07282_consen 14 EYGIQVVEVDEAYTSQTCPRCGHR 37 (69)
T ss_pred HhCCEEEEECCCCCccCccCcccc
Confidence 345566666666666678788764
No 171
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.50 E-value=34 Score=27.48 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=12.1
Q ss_pred cEEEEECCcccccC
Q 019598 124 KLIVLTGAGISTEC 137 (338)
Q Consensus 124 ~IVVlTGAGISaaS 137 (338)
+|++.+|+|++++.
T Consensus 4 kILvvCgsG~~TS~ 17 (94)
T PRK10310 4 KIIVACGGAVATST 17 (94)
T ss_pred eEEEECCCchhHHH
Confidence 69999999998774
No 172
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=24.36 E-value=32 Score=22.07 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=7.2
Q ss_pred CCCCCCCCeeccc
Q 019598 299 PTCQKCNGVLKPD 311 (338)
Q Consensus 299 P~Cp~CgG~LrP~ 311 (338)
.-|+.||+.+++.
T Consensus 4 rfC~~CG~~t~~~ 16 (32)
T PF09297_consen 4 RFCGRCGAPTKPA 16 (32)
T ss_dssp SB-TTT--BEEE-
T ss_pred cccCcCCccccCC
Confidence 4699999988765
No 173
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=24.22 E-value=75 Score=28.16 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=16.0
Q ss_pred CCCCCCCCC------eeccceeecCC
Q 019598 298 IPTCQKCNG------VLKPDVSTSLS 317 (338)
Q Consensus 298 iP~Cp~CgG------~LrP~VV~FGE 317 (338)
+-.||.||. +|-|+|.-=+.
T Consensus 32 lv~CP~Cgs~~V~K~lmAP~v~~~~~ 57 (148)
T PF06676_consen 32 LVSCPVCGSTEVSKALMAPAVATSRS 57 (148)
T ss_pred CccCCCCCCCeEeeecCCCeecCCCC
Confidence 678999984 78899887655
No 174
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.66 E-value=18 Score=32.25 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=10.0
Q ss_pred CCC-CCCCCCCeeccce
Q 019598 297 HIP-TCQKCNGVLKPDV 312 (338)
Q Consensus 297 ~iP-~Cp~CgG~LrP~V 312 (338)
..| .|-+||.. =||.
T Consensus 66 ~~PsYC~~CGkp-yPWt 81 (158)
T PF10083_consen 66 EAPSYCHNCGKP-YPWT 81 (158)
T ss_pred CCChhHHhCCCC-CchH
Confidence 345 69999976 3554
No 175
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.60 E-value=82 Score=33.14 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 108 ~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
..+.+++++++|.+|++.||+.|.|+.
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (574)
T PRK06466 192 HSGQIRKAVEMLLAAKRPVIYSGGGVV 218 (574)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 457899999999999999999999985
No 176
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=23.59 E-value=47 Score=36.58 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=17.5
Q ss_pred CC-CeEEeecccCceecCCCCccc
Q 019598 219 GS-NPLELHGTVYTVVCLDCGFSF 241 (338)
Q Consensus 219 G~-kviELHGsl~~~qC~~C~~~~ 241 (338)
|+ ..+.+|=.=+..+|.+|...+
T Consensus 431 Gys~~l~C~~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 431 GYAPLLLCRDCGYIAECPNCDSPL 454 (730)
T ss_pred CccceeecccCCCcccCCCCCcce
Confidence 54 578888888888999998653
No 177
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=23.49 E-value=79 Score=33.22 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|++|++.||+.|.|.+
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvii~G~g~~ 213 (574)
T PRK09124 186 PAEEELRKLAALLNGSSNITLLCGSGCA 213 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECcChH
Confidence 3457899999999999999999999985
No 178
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=23.38 E-value=43 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=11.2
Q ss_pred CCCCCCCCCeeccceeecC
Q 019598 298 IPTCQKCNGVLKPDVSTSL 316 (338)
Q Consensus 298 iP~Cp~CgG~LrP~VV~FG 316 (338)
+++|.+|++.|=|-+.+-.
T Consensus 2 p~rC~~C~aylNp~~~~~~ 20 (40)
T PF04810_consen 2 PVRCRRCRAYLNPFCQFDD 20 (40)
T ss_dssp S-B-TTT--BS-TTSEEET
T ss_pred ccccCCCCCEECCcceEcC
Confidence 5899999999999877643
No 179
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.04 E-value=52 Score=26.33 Aligned_cols=10 Identities=50% Similarity=1.238 Sum_probs=8.0
Q ss_pred CCCCCCCCCe
Q 019598 298 IPTCQKCNGV 307 (338)
Q Consensus 298 iP~Cp~CgG~ 307 (338)
+-.||.|+|+
T Consensus 21 iD~CPrCrGV 30 (88)
T COG3809 21 IDYCPRCRGV 30 (88)
T ss_pred eeeCCccccE
Confidence 5589999885
No 180
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=22.98 E-value=53 Score=29.44 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=24.6
Q ss_pred eeeecccchhHhhhCC-C--eEEee-----cccCceecCCCCcccchh
Q 019598 205 CMITQNVDRLHHRAGS-N--PLELH-----GTVYTVVCLDCGFSFCRD 244 (338)
Q Consensus 205 ~ViTQNID~Lh~rAG~-k--viELH-----Gsl~~~qC~~C~~~~~r~ 244 (338)
+++--|+-.-.++++- . ++|-- ++-..|.|.+|+......
T Consensus 80 flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~~~wyc~~c~~~~~e~ 127 (159)
T TIGR03037 80 FLLPPHVPHSPQRPAGSIGLVIERKRPQGELDGFQWFCPQCGHKLHRA 127 (159)
T ss_pred EEeCCCCCcccccCCCcEEEEEEeCCCCCCCcceEEECCCCCCeEEEE
Confidence 5777777766666432 1 23332 455578999999875443
No 181
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.97 E-value=84 Score=32.96 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 108 ~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
..+.++++.++|.+|++.||++|.|+-
T Consensus 192 ~~~~i~~~~~~l~~A~rPvi~~G~g~~ 218 (574)
T PRK06882 192 HKGQIKKALKALLVAKKPVLFVGGGVI 218 (574)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 457899999999999999999999985
No 182
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=22.89 E-value=47 Score=28.81 Aligned_cols=15 Identities=27% Similarity=0.769 Sum_probs=12.7
Q ss_pred cccCceecCCCCccc
Q 019598 227 GTVYTVVCLDCGFSF 241 (338)
Q Consensus 227 Gsl~~~qC~~C~~~~ 241 (338)
|.+--.+|.+||+.+
T Consensus 25 ~kl~g~kC~~CG~v~ 39 (140)
T COG1545 25 GKLLGTKCKKCGRVY 39 (140)
T ss_pred CcEEEEEcCCCCeEE
Confidence 777888999999875
No 183
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=22.87 E-value=36 Score=35.02 Aligned_cols=14 Identities=36% Similarity=0.945 Sum_probs=11.6
Q ss_pred CCCCCCCCCCeecc
Q 019598 297 HIPTCQKCNGVLKP 310 (338)
Q Consensus 297 ~iP~Cp~CgG~LrP 310 (338)
.-|.||.||+-|+-
T Consensus 349 ~~p~Cp~Cg~~m~S 362 (421)
T COG1571 349 VNPVCPRCGGRMKS 362 (421)
T ss_pred cCCCCCccCCchhh
Confidence 35999999998874
No 184
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=22.68 E-value=42 Score=28.71 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=11.5
Q ss_pred ccCceecCCCCcccc
Q 019598 228 TVYTVVCLDCGFSFC 242 (338)
Q Consensus 228 sl~~~qC~~C~~~~~ 242 (338)
.-..+.|..|+..+.
T Consensus 120 ~~~~~~C~~C~~~~~ 134 (157)
T PF10263_consen 120 KKYVYRCPSCGREYK 134 (157)
T ss_pred cceEEEcCCCCCEee
Confidence 456789999998764
No 185
>PLN02573 pyruvate decarboxylase
Probab=22.57 E-value=59 Score=34.42 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
...+++++++|.+|++-||+.|.|+..
T Consensus 211 ~~~~~~a~~~L~~AkrPvil~G~g~~~ 237 (578)
T PLN02573 211 EAAVEAAAEFLNKAVKPVLVGGPKLRV 237 (578)
T ss_pred HHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 467999999999999999999999964
No 186
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=22.33 E-value=41 Score=23.44 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=8.7
Q ss_pred CCCCCCCeeccc
Q 019598 300 TCQKCNGVLKPD 311 (338)
Q Consensus 300 ~Cp~CgG~LrP~ 311 (338)
-||.||.+|.+.
T Consensus 2 FCp~Cg~~l~~~ 13 (52)
T smart00661 2 FCPKCGNMLIPK 13 (52)
T ss_pred CCCCCCCccccc
Confidence 488888877554
No 187
>PRK11827 hypothetical protein; Provisional
Probab=22.30 E-value=35 Score=25.73 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=11.3
Q ss_pred CCCCCCCCCeeccc
Q 019598 298 IPTCQKCNGVLKPD 311 (338)
Q Consensus 298 iP~Cp~CgG~LrP~ 311 (338)
+-.||.|+|.|+.+
T Consensus 8 ILaCP~ckg~L~~~ 21 (60)
T PRK11827 8 IIACPVCNGKLWYN 21 (60)
T ss_pred heECCCCCCcCeEc
Confidence 67899999888764
No 188
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=22.22 E-value=43 Score=20.57 Aligned_cols=8 Identities=25% Similarity=0.858 Sum_probs=4.4
Q ss_pred CCCCCCCe
Q 019598 300 TCQKCNGV 307 (338)
Q Consensus 300 ~Cp~CgG~ 307 (338)
-||.||..
T Consensus 18 fC~~CG~~ 25 (26)
T PF13248_consen 18 FCPNCGAK 25 (26)
T ss_pred cChhhCCC
Confidence 46666543
No 189
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=22.03 E-value=54 Score=38.20 Aligned_cols=11 Identities=45% Similarity=0.960 Sum_probs=8.9
Q ss_pred CCCCCCCeecc
Q 019598 300 TCQKCNGVLKP 310 (338)
Q Consensus 300 ~Cp~CgG~LrP 310 (338)
.||+||..|+=
T Consensus 710 ~cp~c~~~~~~ 720 (1213)
T TIGR01405 710 DCPKCGAPLKK 720 (1213)
T ss_pred cCccccccccc
Confidence 69999987664
No 190
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=21.79 E-value=49 Score=34.15 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=9.2
Q ss_pred ceecCCCCcccc
Q 019598 231 TVVCLDCGFSFC 242 (338)
Q Consensus 231 ~~qC~~C~~~~~ 242 (338)
..+|.+||+...
T Consensus 7 ~y~C~~Cg~~~~ 18 (454)
T TIGR00416 7 KFVCQHCGADSP 18 (454)
T ss_pred eEECCcCCCCCc
Confidence 478999998753
No 191
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.76 E-value=67 Score=31.74 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.6
Q ss_pred ecccCceecCCCCcccc
Q 019598 226 HGTVYTVVCLDCGFSFC 242 (338)
Q Consensus 226 HGsl~~~qC~~C~~~~~ 242 (338)
++..++++|+-|+..+.
T Consensus 207 ~~G~RyL~CslC~teW~ 223 (309)
T PRK03564 207 TQGLRYLHCNLCESEWH 223 (309)
T ss_pred CCCceEEEcCCCCCccc
Confidence 45689999999998753
No 192
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.47 E-value=1e+02 Score=27.06 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCccccc
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTE 136 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaa 136 (338)
.++++++++.|.+|++ |++.|-|-|..
T Consensus 20 ~~~l~~~~~~i~~a~~-I~i~G~G~S~~ 46 (179)
T cd05005 20 EEELDKLISAILNAKR-IFVYGAGRSGL 46 (179)
T ss_pred HHHHHHHHHHHHhCCe-EEEEecChhHH
Confidence 5789999999999976 67778888753
No 193
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.41 E-value=94 Score=27.14 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
.++++++.+.|.++++ |++.|.|.|.
T Consensus 17 ~~~~~~~~~~l~~a~~-I~i~G~G~S~ 42 (179)
T TIGR03127 17 EEELDKLADKIIKAKR-IFVAGAGRSG 42 (179)
T ss_pred HHHHHHHHHHHHhCCE-EEEEecCHHH
Confidence 5789999999999885 7778888774
No 194
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=21.40 E-value=43 Score=26.73 Aligned_cols=8 Identities=50% Similarity=1.298 Sum_probs=7.2
Q ss_pred CCCCCCCC
Q 019598 298 IPTCQKCN 305 (338)
Q Consensus 298 iP~Cp~Cg 305 (338)
-|+||.||
T Consensus 84 np~C~~C~ 91 (91)
T cd04482 84 NPVCPKCG 91 (91)
T ss_pred CCcCCCCC
Confidence 69999997
No 195
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.36 E-value=94 Score=29.15 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTEC 137 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaS 137 (338)
.+++++++++|.+|++ |++.|.|.|...
T Consensus 115 ~~~l~~~~~~i~~a~~-I~i~G~G~s~~~ 142 (278)
T PRK11557 115 EEKLHECVTMLRSARR-IILTGIGASGLV 142 (278)
T ss_pred HHHHHHHHHHHhcCCe-EEEEecChhHHH
Confidence 4778899999999987 677788877543
No 196
>COG4830 RPS26B Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=30 Score=28.75 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=24.1
Q ss_pred ecccCceecCCCCcccchhhHHHHHHhhChhhHHHHh
Q 019598 226 HGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIE 262 (338)
Q Consensus 226 HGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~ 262 (338)
-|....++|.+|+...+.+.-.......+|.-+++..
T Consensus 15 rGhv~~v~CdnCg~~vPkdKAikr~~i~s~Ve~a~~r 51 (108)
T COG4830 15 RGHVKYVRCDNCGKAVPKDKAIKRTAIRSPVEAAAAR 51 (108)
T ss_pred CCCccceeeccccccCCccceeeEeeccCcccHHHHH
Confidence 3778899999999998877544433334444444433
No 197
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.14 E-value=87 Score=29.35 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECG 138 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSG 138 (338)
.++++++++.|.+|++ |++.|.|.|...+
T Consensus 115 ~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a 143 (284)
T PRK11302 115 PSAINRAVDLLTQAKK-ISFFGLGASAAVA 143 (284)
T ss_pred HHHHHHHHHHHHcCCe-EEEEEcchHHHHH
Confidence 5779999999999986 7888999886654
No 198
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=21.00 E-value=82 Score=32.85 Aligned_cols=24 Identities=4% Similarity=-0.158 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCcEEEEECCccc
Q 019598 111 DINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 111 ~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.++++.++|++|++.||+.|.|+.
T Consensus 194 ~i~~a~~~L~~AkrPvil~G~g~~ 217 (539)
T TIGR03393 194 FRDAAENKLAMAKRVSLLADFLAL 217 (539)
T ss_pred HHHHHHHHHHhCCCCEEEeChhhc
Confidence 488999999999999999999985
No 199
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.99 E-value=49 Score=25.80 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=11.2
Q ss_pred CcEEEEECCccccc
Q 019598 123 AKLIVLTGAGISTE 136 (338)
Q Consensus 123 k~IVVlTGAGISaa 136 (338)
+++++.+|+|++++
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 46888999998875
No 200
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=20.90 E-value=59 Score=25.30 Aligned_cols=12 Identities=17% Similarity=0.384 Sum_probs=5.1
Q ss_pred CceecCCCCccc
Q 019598 230 YTVVCLDCGFSF 241 (338)
Q Consensus 230 ~~~qC~~C~~~~ 241 (338)
....|..|...|
T Consensus 16 ~~~~C~~C~~~~ 27 (70)
T PF07191_consen 16 GHYHCEACQKDY 27 (70)
T ss_dssp TEEEETTT--EE
T ss_pred CEEECccccccc
Confidence 344555555543
No 201
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=20.64 E-value=61 Score=33.26 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=12.2
Q ss_pred CCCCCCCCCeeccceeec
Q 019598 298 IPTCQKCNGVLKPDVSTS 315 (338)
Q Consensus 298 iP~Cp~CgG~LrP~VV~F 315 (338)
...||.||+.+....=.+
T Consensus 21 ~~~c~~cGl~lp~~~~~~ 38 (411)
T COG0498 21 QGLCPDCGLFLPAEYPYF 38 (411)
T ss_pred hCcCCcCCcccccccCcc
Confidence 367888888777655433
No 202
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=20.54 E-value=96 Score=32.49 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECG 138 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSG 138 (338)
+..|++++++|..||+-|++.|+|+=..+-
T Consensus 285 ~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d 314 (675)
T KOG4166|consen 285 MSHIEQIARLISLAKKPVLYVGGGCLNSSD 314 (675)
T ss_pred HHHHHHHHHHHHhccCceEEeCcccccCCc
Confidence 578999999999999999999999877665
No 203
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=20.51 E-value=59 Score=22.29 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=10.0
Q ss_pred CCCCCCCCeecc
Q 019598 299 PTCQKCNGVLKP 310 (338)
Q Consensus 299 P~Cp~CgG~LrP 310 (338)
..||.||+.|.+
T Consensus 3 ~~C~~Cg~~l~~ 14 (47)
T PF13005_consen 3 RACPDCGGELKE 14 (47)
T ss_pred CcCCCCCceeeE
Confidence 479999998883
No 204
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.35 E-value=53 Score=35.66 Aligned_cols=9 Identities=22% Similarity=0.918 Sum_probs=7.2
Q ss_pred CCCCCCCCe
Q 019598 299 PTCQKCNGV 307 (338)
Q Consensus 299 P~Cp~CgG~ 307 (338)
..||.||+.
T Consensus 422 ~~Cp~Cg~~ 430 (679)
T PRK05580 422 KACPECGST 430 (679)
T ss_pred CCCCCCcCC
Confidence 489999875
No 205
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.11 E-value=1.1e+02 Score=26.72 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEECC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGA 131 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGA 131 (338)
.+.++.+.+.|.+|+++||.||.
T Consensus 23 eeEve~ireyi~sA~r~vV~t~N 45 (156)
T COG4019 23 EEEVEKIREYIVSAKRIVVATNN 45 (156)
T ss_pred HHHHHHHHHHHhccceEEEecCC
Confidence 57899999999999999998874
Done!