Query 019598
Match_columns 338
No_of_seqs 206 out of 1349
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yc5_A NAD-dependent deacetyla 100.0 1E-48 3.5E-53 365.3 14.5 178 112-336 3-183 (246)
2 1ma3_A SIR2-AF2, transcription 100.0 1.9E-48 6.5E-53 365.0 15.2 179 110-336 3-186 (253)
3 1m2k_A Silent information regu 100.0 1E-47 3.5E-52 359.3 13.2 174 113-336 3-180 (249)
4 3riy_A NAD-dependent deacetyla 100.0 2.9E-48 9.9E-53 367.7 9.0 194 110-336 9-215 (273)
5 3u31_A SIR2A, transcriptional 100.0 8.9E-48 3E-52 367.3 11.5 185 107-336 30-219 (290)
6 1q1a_A HST2 protein; ternary c 100.0 1.4E-45 4.8E-50 351.6 15.7 174 109-327 5-192 (289)
7 3glr_A NAD-dependent deacetyla 100.0 1.1E-45 3.9E-50 351.9 11.9 177 111-336 10-200 (285)
8 1q14_A HST2 protein; histone d 100.0 8.8E-45 3E-49 355.9 13.1 181 104-329 8-202 (361)
9 1j8f_A SIRT2, sirtuin 2, isofo 100.0 2.4E-44 8.4E-49 348.2 15.6 179 110-336 29-223 (323)
10 2hjh_A NAD-dependent histone d 100.0 2.9E-44 9.8E-49 351.6 10.7 208 110-336 34-258 (354)
11 1s5p_A NAD-dependent deacetyla 100.0 3.8E-44 1.3E-48 332.5 9.4 163 122-336 1-170 (235)
12 4iao_A NAD-dependent histone d 100.0 1.8E-43 6.2E-48 355.5 13.3 210 110-336 172-396 (492)
13 3k35_A NAD-dependent deacetyla 100.0 3.8E-42 1.3E-46 331.5 7.6 173 109-336 31-209 (318)
14 3pki_A NAD-dependent deacetyla 100.0 1.1E-41 3.9E-46 331.5 6.3 173 109-336 31-209 (355)
15 2k5c_A Uncharacterized protein 82.8 0.99 3.4E-05 35.1 3.4 29 298-332 51-79 (95)
16 2lcq_A Putative toxin VAPC6; P 81.1 0.67 2.3E-05 39.5 2.1 24 219-242 115-143 (165)
17 1lko_A Rubrerythrin all-iron(I 77.3 0.82 2.8E-05 40.3 1.5 14 229-242 153-166 (191)
18 3na7_A HP0958; flagellar bioge 73.9 2.3 7.8E-05 38.9 3.7 22 219-244 190-211 (256)
19 4rxn_A Rubredoxin; electron tr 72.0 3.6 0.00012 29.2 3.5 13 230-242 2-14 (54)
20 3cf4_G Acetyl-COA decarboxylas 71.8 2.2 7.4E-05 36.4 2.8 27 109-135 21-47 (170)
21 6rxn_A Rubredoxin; electron tr 70.1 2.7 9.2E-05 28.9 2.4 14 229-242 2-15 (46)
22 1yuz_A Nigerythrin; rubrythrin 67.4 2.8 9.6E-05 37.3 2.6 13 229-241 169-181 (202)
23 2kdx_A HYPA, hydrogenase/ureas 67.2 3 0.0001 33.8 2.5 19 223-241 65-83 (119)
24 4ayb_P DNA-directed RNA polyme 64.1 2.9 0.0001 29.0 1.6 13 231-243 3-15 (48)
25 1e8j_A Rubredoxin; iron-sulfur 63.2 9.6 0.00033 26.7 4.2 13 230-242 2-14 (52)
26 3a43_A HYPD, hydrogenase nicke 60.4 3.8 0.00013 34.3 2.0 21 223-243 62-82 (139)
27 2kn9_A Rubredoxin; metalloprot 60.0 7.5 0.00026 29.9 3.4 14 229-242 25-38 (81)
28 3pwf_A Rubrerythrin; non heme 58.4 4 0.00014 35.3 1.9 12 230-241 137-148 (170)
29 2v3b_B Rubredoxin 2, rubredoxi 57.8 7.3 0.00025 27.6 2.8 13 230-242 2-14 (55)
30 1twf_L ABC10-alpha, DNA-direct 56.4 6.4 0.00022 29.4 2.4 12 230-241 27-38 (70)
31 1s24_A Rubredoxin 2; electron 55.8 8.8 0.0003 29.9 3.2 14 229-242 33-46 (87)
32 1dx8_A Rubredoxin; electron tr 54.2 12 0.00042 27.8 3.7 15 228-242 4-18 (70)
33 1yk4_A Rubredoxin, RD; electro 51.0 11 0.00037 26.4 2.8 12 231-242 2-13 (52)
34 1e2b_A Enzyme IIB-cellobiose; 41.9 7.8 0.00027 30.6 0.9 14 123-136 4-17 (106)
35 2gmg_A Hypothetical protein PF 36.7 22 0.00075 28.6 2.8 13 229-241 65-77 (105)
36 2xig_A Ferric uptake regulatio 36.0 31 0.0011 28.5 3.8 53 184-244 58-112 (150)
37 3eya_A Pyruvate dehydrogenase 32.9 34 0.0012 34.0 4.2 28 107-134 186-213 (549)
38 1mzb_A Ferric uptake regulatio 32.3 43 0.0015 27.0 4.1 53 184-244 50-104 (136)
39 2gnr_A Conserved hypothetical 31.4 16 0.00054 30.7 1.3 16 226-241 42-57 (145)
40 4hpq_A ATG31, KLTH0C07942P; au 29.1 23 0.00078 26.3 1.6 15 10-24 1-15 (69)
41 4feg_A Pyruvate oxidase; carba 29.0 43 0.0015 33.8 4.3 29 106-134 196-224 (603)
42 1tvm_A PTS system, galactitol- 28.2 15 0.00053 29.1 0.6 14 123-136 22-35 (113)
43 3h0g_L DNA-directed RNA polyme 27.0 38 0.0013 24.7 2.5 10 298-307 38-47 (63)
44 2c31_A Oxalyl-COA decarboxylas 26.1 47 0.0016 33.1 3.9 28 107-134 198-225 (568)
45 2w57_A Ferric uptake regulatio 25.8 62 0.0021 26.6 4.0 53 184-244 49-103 (150)
46 1ybh_A Acetolactate synthase, 25.5 51 0.0017 33.1 4.0 27 108-134 200-226 (590)
47 3irb_A Uncharacterized protein 25.4 22 0.00075 29.7 1.1 15 227-241 43-57 (145)
48 2jny_A Uncharacterized BCR; st 24.8 34 0.0012 25.1 1.9 14 298-311 10-23 (67)
49 2o03_A Probable zinc uptake re 24.4 68 0.0023 25.6 3.9 51 185-243 43-95 (131)
50 2ywx_A Phosphoribosylaminoimid 24.3 31 0.0011 29.6 1.8 27 113-141 41-67 (157)
51 2fiy_A Protein FDHE homolog; F 24.2 30 0.001 32.6 1.9 17 226-242 203-219 (309)
52 3nbm_A PTS system, lactose-spe 24.1 23 0.00078 28.2 0.9 16 121-136 5-20 (108)
53 3fxa_A SIS domain protein; str 23.8 44 0.0015 28.2 2.8 30 109-138 31-60 (201)
54 2kre_A Ubiquitin conjugation f 23.6 50 0.0017 25.5 2.8 28 299-331 64-91 (100)
55 1vkr_A Mannitol-specific PTS s 23.4 18 0.00062 29.4 0.2 18 120-137 11-28 (125)
56 1ozh_A ALS, acetolactate synth 23.3 61 0.0021 32.4 4.1 28 107-134 192-219 (566)
57 3eyy_A Putative iron uptake re 22.9 44 0.0015 27.4 2.4 52 185-244 50-103 (145)
58 2kpi_A Uncharacterized protein 22.8 37 0.0013 23.9 1.7 14 298-311 10-23 (56)
59 3sho_A Transcriptional regulat 22.6 71 0.0024 26.3 3.8 29 109-138 26-54 (187)
60 2l2q_A PTS system, cellobiose- 22.3 29 0.00099 27.1 1.2 13 124-136 6-18 (109)
61 2pk7_A Uncharacterized protein 21.8 36 0.0012 25.1 1.5 14 298-311 8-21 (69)
62 2c2l_A CHIP, carboxy terminus 21.8 54 0.0018 28.9 3.0 26 300-330 245-270 (281)
63 4g9i_A Hydrogenase maturation 21.3 81 0.0028 33.4 4.6 34 298-335 178-214 (772)
64 2js4_A UPF0434 protein BB2007; 20.7 37 0.0013 25.1 1.4 14 298-311 8-21 (70)
65 1wgm_A Ubiquitin conjugation f 20.6 75 0.0026 24.4 3.3 28 299-331 58-85 (98)
66 2q28_A Oxalyl-COA decarboxylas 20.6 44 0.0015 33.2 2.4 27 108-134 197-223 (564)
67 2xhz_A KDSD, YRBH, arabinose 5 20.5 43 0.0015 27.6 2.0 28 111-138 37-64 (183)
68 1v5e_A Pyruvate oxidase; oxido 20.4 73 0.0025 32.0 4.0 27 107-133 190-216 (590)
69 2jr6_A UPF0434 protein NMA0874 20.3 36 0.0012 25.0 1.2 14 298-311 8-21 (68)
70 2vbf_A Branched-chain alpha-ke 20.2 54 0.0018 32.7 2.9 28 109-136 215-242 (570)
No 1
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=1e-48 Score=365.32 Aligned_cols=178 Identities=31% Similarity=0.593 Sum_probs=141.8
Q ss_pred HHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCC--CCCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCH
Q 019598 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (338)
Q Consensus 112 i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~--~~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~ 189 (338)
+++|+++|++|++|||+||||||++|||||||+.+|+|. .|+ .++.+.|..++. .+|+++...+..+.+++||.
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~-~~~~~~~~~~~f~~~p~---~~~~~~~~~~~~~~~~~Pn~ 78 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYK-KYSQNVFDIDFFYSHPE---EFYRFAKEGIFPMLQAKPNL 78 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHH---HHHHHHHHHTGGGGGCCCCH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCcccc-cCCCceecHHHHhhCHH---HHHHHHHHHHHHhccCCCCH
Confidence 578999999999999999999999999999999999997 464 467777877654 55554444445567899999
Q ss_pred HHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCC
Q 019598 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (338)
Q Consensus 190 ~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~ 268 (338)
+|++|++|+++|++++||||||||||++||+ +|+||||++..++|+.|++.|+.+.+...+
T Consensus 79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~------------------ 140 (246)
T 1yc5_A 79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL------------------ 140 (246)
T ss_dssp HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT------------------
T ss_pred HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh------------------
Confidence 9999999999999999999999999999999 799999999999999999987665432100
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 269 ~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
+ ...+|+||.|||.|||+||||||++|.+.++++.+.+++.|+
T Consensus 141 -------------------~------~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl 183 (246)
T 1yc5_A 141 -------------------E------SSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASL 183 (246)
T ss_dssp -------------------T------TCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSE
T ss_pred -------------------c------cCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCE
Confidence 0 113799999999999999999999999999999988887764
No 2
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=1.9e-48 Score=365.03 Aligned_cols=179 Identities=35% Similarity=0.621 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCC
Q 019598 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQ 186 (338)
Q Consensus 110 ~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~ 186 (338)
+++++|+++|++|++|||+||||||++|||||||+.+|+|. .|++ ++.+.|..++. .+|+++...+..+. ++
T Consensus 3 ~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~-~~~~~~~~~~~~f~~~p~---~~~~f~~~~~~~~~-~~ 77 (253)
T 1ma3_A 3 DEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWR-KYDPEEVASISGFKRNPR---AFWEFSMEMKDKLF-AE 77 (253)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSC-SSCHHHHTBHHHHTTCHH---HHHHHHHHTHHHHT-CC
T ss_pred HHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCcccc-cCChhheecHHHHhcCHH---HHHHHHHHHHHhcc-CC
Confidence 67899999999999999999999999999999999999997 5765 57777776654 55554444444455 99
Q ss_pred CCHHHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhc
Q 019598 187 PNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (338)
Q Consensus 187 Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~ 265 (338)
||.+|++|++|+++|++++||||||||||++||+ +|+||||++..++|+.|++.|+.+.+...+
T Consensus 78 Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~--------------- 142 (253)
T 1ma3_A 78 PNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDF--------------- 142 (253)
T ss_dssp CCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGTHHHH---------------
T ss_pred CCHHHHHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHHHHHh---------------
Confidence 9999999999999999999999999999999999 799999999999999999988765432211
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC-eeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG-~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....+|+||.||| .|||+||||||++|.+.++.+.+.+.+.|+
T Consensus 143 ----------------------------~~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl 186 (253)
T 1ma3_A 143 ----------------------------NKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDA 186 (253)
T ss_dssp ----------------------------HTTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSE
T ss_pred ----------------------------ccCCCCCCCCCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCE
Confidence 0123799999999 999999999999999999999988877764
No 3
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=1e-47 Score=359.31 Aligned_cols=174 Identities=35% Similarity=0.615 Sum_probs=150.1
Q ss_pred HHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCH
Q 019598 113 NQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (338)
Q Consensus 113 ~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~ 189 (338)
++|+++|++|++|||+||||||++|||||||+.+|+|. .|++ ++.+.|..+ +..||+++...+..+..++||.
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~-~~~~~~~~~~~~f~~~---p~~~w~~~~~~~~~~~~~~Pn~ 78 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWN-RYRPEELANPQAFAKD---PEKVWKWYAWRMEKVFNAQPNK 78 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHH-HSCHHHHSSHHHHHHC---HHHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCcc-CCCHHhcccHHHHhcC---HHHHHHHHHHHHHHhCcCCCCH
Confidence 57899999999999999999999999999999999997 4665 566777765 4578887666666667899999
Q ss_pred HHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCC
Q 019598 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (338)
Q Consensus 190 ~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~ 268 (338)
+|++|++|+++|++++||||||||||++||+ +|+||||++..++|+.|++.|+++..
T Consensus 79 ~H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~---------------------- 136 (249)
T 1m2k_A 79 AHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESA---------------------- 136 (249)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSSC----------------------
T ss_pred HHHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchhh----------------------
Confidence 9999999999999999999999999999999 79999999999999999987653210
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 269 ~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
++ ...+|+||.|||.|||+||||||++|.+.++.+.+.+++.|+
T Consensus 137 ------------------~~------~~~~p~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl 180 (249)
T 1m2k_A 137 ------------------PK------IPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADV 180 (249)
T ss_dssp ------------------CC------SSSCCBCSSSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSE
T ss_pred ------------------cc------CCCCCCCCCCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCE
Confidence 11 113799999999999999999999999999999988877764
No 4
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=2.9e-48 Score=367.73 Aligned_cols=194 Identities=27% Similarity=0.495 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhhhcCC
Q 019598 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQ 186 (338)
Q Consensus 110 ~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~ 186 (338)
+++++|+++|++|++|||+|||||||+|||||||+++|+|. .|++ .+.+.|..+ +..||+++...+..+.+++
T Consensus 9 ~~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~-~~~~~~l~~~~~f~~~---p~~~w~fy~~~~~~~~~~~ 84 (273)
T 3riy_A 9 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFAHN---PSRVWEFYHYRREVMGSKE 84 (273)
T ss_dssp CCHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEET-TEEHHHHSSHHHHHHC---HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhh-hCChhhcCCHHHHhhC---HHHHHHHHHHHHHHhhhCC
Confidence 46889999999999999999999999999999999999997 4554 355666654 5678876554444567899
Q ss_pred CCHHHHHHHHHHH----cCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHH
Q 019598 187 PNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261 (338)
Q Consensus 187 Pn~~H~aLa~Le~----~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~ 261 (338)
||.+|++|++|++ +|++++||||||||||++||+ +|+||||++..++|++|++.+.+.. +|.|...
T Consensus 85 Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~~--------~p~~~~~- 155 (273)
T 3riy_A 85 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPAL- 155 (273)
T ss_dssp CCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECCC--------SSSSGGG-
T ss_pred CCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCcccccc--------cchhhhh-
Confidence 9999999999995 599999999999999999999 7999999999999999999875421 2222211
Q ss_pred hhhcCCCCCCCCCcCcccCCCCCc---ccccccccccCCCCCC--CCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 262 ESLDYGSPGSDRSFGMKQRPDGDI---EIDEKFWEEDFHIPTC--QKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~pdgd~---~i~~~~~~~~~~iP~C--p~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
+ ....|+++. .++ ...+|+| |.|||+|||+||||||+||.+.++++.+.+++.|+
T Consensus 156 ~--------------~~~~~~~~~~~~~~~------~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl 215 (273)
T 3riy_A 156 S--------------GKGAPEPGTQDASIP------VEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDL 215 (273)
T ss_dssp T--------------TCCCCSTTCCCCCCC------GGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSE
T ss_pred h--------------cccCCcccccccccc------cCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCE
Confidence 0 011233322 122 2248999 78999999999999999999999999998888774
No 5
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=8.9e-48 Score=367.30 Aligned_cols=185 Identities=24% Similarity=0.434 Sum_probs=150.6
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccC-CCCCCCCCCCCC---CHHHHhhchHHHHHHHHHHHHHHHhh
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRS-PNGAYSSGFKPI---THQQFVRSSRARRRYWARSYAGWRRF 182 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~-~~Gly~~~~~~~---~~~~f~~~~~~~~~~wa~~~~~~~~~ 182 (338)
+..+++++|+++|++|++|||+|||||||+|||||||+ .+|+|. .|++. +...|.. +++.||+++.. +...
T Consensus 30 ~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~-~~~p~~~~~~~~f~~---~p~~~w~~~~~-~~~~ 104 (290)
T 3u31_A 30 TQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWS-KYDPRIYGTIWGFWK---YPEKIWEVIRD-ISSD 104 (290)
T ss_dssp CEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGG-GSCHHHHTBHHHHHH---CHHHHHHHHHH-HHHH
T ss_pred hhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhh-cCCHHHhhCHHhhhh---CHHHHHHHHHH-Hhhh
Confidence 44577999999999999999999999999999999999 789997 57653 3444444 46788875433 3333
Q ss_pred hcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHH
Q 019598 183 MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261 (338)
Q Consensus 183 ~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~ 261 (338)
..++||.+|++|++|++.|++++||||||||||++||+ +|+||||++..++|++|++.++.+.. +..
T Consensus 105 ~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~----------~~~-- 172 (290)
T 3u31_A 105 YEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKI----------MLQ-- 172 (290)
T ss_dssp SCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTG----------GGS--
T ss_pred ccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHh----------hhc--
Confidence 78999999999999999999999999999999999999 79999999999999999988764321 000
Q ss_pred hhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 262 ESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
+ ...+ ....+|+|| |||+|||+||||||++|.+.++++.+.+.+.|+
T Consensus 173 --------------------~-~~~~------~~~~~P~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDl 219 (290)
T 3u31_A 173 --------------------K-TSHF------MHQLPPECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDL 219 (290)
T ss_dssp --------------------T-TSST------TTSSSCBCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSE
T ss_pred --------------------c-cccc------cccCCCCCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCE
Confidence 0 0000 012379999 999999999999999999999999988877774
No 6
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=1.4e-45 Score=351.59 Aligned_cols=174 Identities=25% Similarity=0.449 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhc--CCcEEEEECCcccccCCCCCccCCC-CCCCCC--CC---C---CCHHHHhhchHHHHHHHHHHHH
Q 019598 109 IEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYA 177 (338)
Q Consensus 109 ~~~i~~L~~~I~~--Ak~IVVlTGAGISaaSGIPdFR~~~-Gly~~~--~~---~---~~~~~f~~~~~~~~~~wa~~~~ 177 (338)
.+++++|+++|++ |++|||+||||||++|||||||+.+ |+|... |+ + ++...|..++ ..||.++..
T Consensus 5 ~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p---~~f~~~~~~ 81 (289)
T 1q1a_A 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDP---LPFYTLAKE 81 (289)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCH---HHHHHHHHH
Confidence 4679999999999 9999999999999999999999995 999741 22 1 2344455554 467764322
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhC
Q 019598 178 GWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALN 254 (338)
Q Consensus 178 ~~~~~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~n 254 (338)
.....++||.+|++|++|++.|++++||||||||||++||+ +|+||||++..++|++|++.|+.+.+...+...
T Consensus 82 --~~~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~- 158 (289)
T 1q1a_A 82 --LYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEH- 158 (289)
T ss_dssp --HCSSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCS-
T ss_pred --HhhCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhc-
Confidence 22357999999999999999999999999999999999998 699999999999999999988776554333000
Q ss_pred hhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHH
Q 019598 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIF 327 (338)
Q Consensus 255 p~~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~ 327 (338)
..+.+|+||.|||.|||+||||||++|.+.++++
T Consensus 159 ---------------------------------------~~~~~P~C~~Cgg~lrP~vv~FGE~lp~~~~~~~ 192 (289)
T 1q1a_A 159 ---------------------------------------PIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETW 192 (289)
T ss_dssp ---------------------------------------SCCSCCBCTTTCCBEEEEECCBTSBCCHHHHHHH
T ss_pred ---------------------------------------cCCCCccCCCCCCEECCCEEEcCCCCCHHHHHHH
Confidence 0124799999999999999999999998765544
No 7
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1.1e-45 Score=351.87 Aligned_cols=177 Identities=27% Similarity=0.472 Sum_probs=141.4
Q ss_pred HHHHHHHHHhc--CCcEEEEECCcccccCCCCCccCCC-CCCCC--CCCC------CCHHHHhhchHHHHHHHHHHHHHH
Q 019598 111 DINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFKP------ITHQQFVRSSRARRRYWARSYAGW 179 (338)
Q Consensus 111 ~i~~L~~~I~~--Ak~IVVlTGAGISaaSGIPdFR~~~-Gly~~--~~~~------~~~~~f~~~~~~~~~~wa~~~~~~ 179 (338)
.++.++++|++ |++|||+|||||||+|||||||+++ |+|.. .|.. ++...|..++ +.||.++...
T Consensus 10 ~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P---~~f~~~~~~~- 85 (285)
T 3glr_A 10 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNP---KPFFTLAKEL- 85 (285)
T ss_dssp CHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCC---HHHHHHHHHH-
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCc---HHHHHHHHHh-
Confidence 47899999996 8999999999999999999999984 99973 2322 2334455543 5677643221
Q ss_pred HhhhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhChh
Q 019598 180 RRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPK 256 (338)
Q Consensus 180 ~~~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~ 256 (338)
....++||.+|++|++|+++|++.+||||||||||++||+ +|+||||++..++|++|++.|+++.+...+.
T Consensus 86 -~~~~a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~----- 159 (285)
T 3glr_A 86 -YPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM----- 159 (285)
T ss_dssp -STTSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH-----
T ss_pred -hhccCCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh-----
Confidence 2247899999999999999999999999999999999996 7999999999999999999887765432210
Q ss_pred hHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 257 WAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
...+|+||.|||+|||+||||||++|.+.+. +.+.+++.|+
T Consensus 160 --------------------------------------~~~~P~C~~Cgg~lrP~IV~FGE~lp~~~~~-~~~~~~~aDl 200 (285)
T 3glr_A 160 --------------------------------------ADRVPRCPVCTGVVKPDIVFFGEPLPQRFLL-HVVDFPMADL 200 (285)
T ss_dssp --------------------------------------TTCCCBCTTTCCBEEEEECCTTSBCCGGGGG-HHHHHHHCSE
T ss_pred --------------------------------------cCCCCCCCCCCCccCCcEEEeCCcCCHHHHH-HHHHHhcCCE
Confidence 1247999999999999999999999987663 4555666653
No 8
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=8.8e-45 Score=355.89 Aligned_cols=181 Identities=24% Similarity=0.440 Sum_probs=132.3
Q ss_pred CCCCCHHHHHHHHHHHhc--CCcEEEEECCcccccCCCCCccCCC-CCCCC--CCC---C---CCHHHHhhchHHHHHHH
Q 019598 104 ADPPSIEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFK---P---ITHQQFVRSSRARRRYW 172 (338)
Q Consensus 104 ~~~~~~~~i~~L~~~I~~--Ak~IVVlTGAGISaaSGIPdFR~~~-Gly~~--~~~---~---~~~~~f~~~~~~~~~~w 172 (338)
+.++...+++.|+++|++ |++|||+|||||||+|||||||+.+ |+|.. .|+ + ++...|..++ ..||
T Consensus 8 ~~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P---~~f~ 84 (361)
T 1q14_A 8 STASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDP---LPFY 84 (361)
T ss_dssp SSCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCC---HHHH
T ss_pred CchhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCH---HHHH
Confidence 444445789999999999 9999999999999999999999995 99974 122 1 2334455554 4677
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHH
Q 019598 173 ARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQ 249 (338)
Q Consensus 173 a~~~~~~~~~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~ 249 (338)
.++. ......++||.+|++|++|++.|++++||||||||||++||+ +|+||||++..++|++|++.|+++.+...
T Consensus 85 ~~~~--~~~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~ 162 (361)
T 1q14_A 85 TLAK--ELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSK 162 (361)
T ss_dssp HHHT--TTSCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHH
T ss_pred HHHH--HHhhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHH
Confidence 6432 122357999999999999999999999999999999999998 69999999999999999998876654322
Q ss_pred HHhhChhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhh
Q 019598 250 VKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFT 329 (338)
Q Consensus 250 l~~~np~~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~ 329 (338)
+. . . ....+|+||.|||+|||+||||||++|.+.++.+.+
T Consensus 163 ~~--------------~---------------~-----------~~~~~P~Cp~Cgg~lrP~VV~FGE~lp~~~~~~~~~ 202 (361)
T 1q14_A 163 LA--------------E---------------H-----------PIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLN 202 (361)
T ss_dssp TT--------------S---------------S-----------SCSCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHH
T ss_pred Hh--------------h---------------c-----------ccCCCCCCcCCCCEeCCCcccccccCCHHHHHHHHH
Confidence 20 0 0 012379999999999999999999999988766655
No 9
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=2.4e-44 Score=348.22 Aligned_cols=179 Identities=26% Similarity=0.461 Sum_probs=146.4
Q ss_pred HHHHHHHHHHhc--CCcEEEEECCcccccCCCCCccCC-CCCCCCC--CC---C---CCHHHHhhchHHHHHHHHHHHHH
Q 019598 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSP-NGAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAG 178 (338)
Q Consensus 110 ~~i~~L~~~I~~--Ak~IVVlTGAGISaaSGIPdFR~~-~Gly~~~--~~---~---~~~~~f~~~~~~~~~~wa~~~~~ 178 (338)
.+++.|+++|++ |++|||+|||||||+|||||||+. +|+|... |. + ++...|..+ ++.||+++ .
T Consensus 29 ~~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~---p~~f~~~~--r 103 (323)
T 1j8f_A 29 LTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKH---PEPFFALA--K 103 (323)
T ss_dssp SSHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHC---CHHHHHHH--H
T ss_pred HHHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcC---HHHHHHHH--H
Confidence 458899999996 899999999999999999999999 5999741 22 1 233445544 45677653 1
Q ss_pred HHhhhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCC--CCcccchhhHHHHHHhh
Q 019598 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLD--CGFSFCRDLFQDQVKAL 253 (338)
Q Consensus 179 ~~~~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~--C~~~~~r~~~~~~l~~~ 253 (338)
......++||.+|++|++|+++|++++||||||||||++||+ +|+||||++..++|++ |++.|+++.+...+
T Consensus 104 ~~~~~~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i--- 180 (323)
T 1j8f_A 104 ELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKI--- 180 (323)
T ss_dssp HHSSSSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHH---
T ss_pred HHhhCcCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhh---
Confidence 122258999999999999999999999999999999999997 6999999999999999 99988765432211
Q ss_pred ChhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhcccc
Q 019598 254 NPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPA 333 (338)
Q Consensus 254 np~~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~ 333 (338)
....+|+||.|||+|||+||||||++|.+.++.+.+.+++
T Consensus 181 ----------------------------------------~~~~~P~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~ 220 (323)
T 1j8f_A 181 ----------------------------------------FSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLK 220 (323)
T ss_dssp ----------------------------------------HTTCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHGGGS
T ss_pred ----------------------------------------ccCCCCCCcCCCCccCCCEEecCCcCCHHHHHHHHHHHhC
Confidence 0123899999999999999999999999999999998887
Q ss_pred CCC
Q 019598 334 DDY 336 (338)
Q Consensus 334 ~~~ 336 (338)
.|+
T Consensus 221 aDl 223 (323)
T 1j8f_A 221 VDL 223 (323)
T ss_dssp CSE
T ss_pred CCE
Confidence 774
No 10
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-44 Score=351.58 Aligned_cols=208 Identities=24% Similarity=0.305 Sum_probs=153.6
Q ss_pred HHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCC-----CC---CCCHHHHhhchHHHHHHHHHHHHHHHh
Q 019598 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FK---PITHQQFVRSSRARRRYWARSYAGWRR 181 (338)
Q Consensus 110 ~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~-----~~---~~~~~~f~~~~~~~~~~wa~~~~~~~~ 181 (338)
++++.|+++|++|++|||+|||||||+||||||||++|+|... ++ .++++.|..++ ..||.++ ....
T Consensus 34 ~~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P---~~f~~~~--~~~~ 108 (354)
T 2hjh_A 34 FTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDP---SVFYNIA--NMVL 108 (354)
T ss_dssp CSHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCT---HHHHHHG--GGGC
T ss_pred HHHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCH---HHHHHHH--HHHc
Confidence 4688999999999999999999999999999999999999741 22 24667777665 4567643 2222
Q ss_pred hhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhh----C
Q 019598 182 FMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKAL----N 254 (338)
Q Consensus 182 ~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~----n 254 (338)
...++||.+|++|++|+++|++.+||||||||||++||+ +|+||||++..++|++|+..++++.++..+... +
T Consensus 109 ~~~~~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~P~C 188 (354)
T 2hjh_A 109 PPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLC 188 (354)
T ss_dssp CCCSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCCCBC
T ss_pred cccCCCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccCCCcC
Confidence 236889999999999999999999999999999999997 799999999999999999999888776655332 2
Q ss_pred hhhHHHH-hhhcCCCCCCCCCcCcccCC-CCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccc
Q 019598 255 PKWAEAI-ESLDYGSPGSDRSFGMKQRP-DGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVP 332 (338)
Q Consensus 255 p~~~~~~-~~~~~~~~~~~~~~~~~~~p-dgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~ 332 (338)
|.+.... +... +..++ .+|..++... ....+.|..|||.|||+||||||++|.+.++.+.+.+.
T Consensus 189 p~C~~~~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~ 254 (354)
T 2hjh_A 189 PYCYKKRREYFP-----------EGYNNKVGVAASQGSM---SERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDIL 254 (354)
T ss_dssp TTTHHHHHHHCC-----------C--------------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTT
T ss_pred cccccccccccc-----------cccccccccccccccc---ccccccccccCCeeCCChhhccccCCHHHHHHHHHHHh
Confidence 2222110 0000 00000 1122222211 12357899999999999999999999999999988888
Q ss_pred cCCC
Q 019598 333 ADDY 336 (338)
Q Consensus 333 ~~~~ 336 (338)
+.|+
T Consensus 255 ~aDl 258 (354)
T 2hjh_A 255 ECDL 258 (354)
T ss_dssp TCCE
T ss_pred hCCE
Confidence 8774
No 11
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=3.8e-44 Score=332.52 Aligned_cols=163 Identities=29% Similarity=0.479 Sum_probs=126.4
Q ss_pred CCcEEEEECCcccccCCCCCccCCCCCCCCCCCC---CCHHHHhhchHHHHHHHHHHHHHHHhh--hcCCCCHHHHHHHH
Q 019598 122 SAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRF--MAAQPNPAHFALAS 196 (338)
Q Consensus 122 Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~---~~~~~f~~~~~~~~~~wa~~~~~~~~~--~~a~Pn~~H~aLa~ 196 (338)
|++|||+||||||++|||||||+.+|+|. .|++ ++.+.|..+++..|.||. .....+ ..++||.+|++|++
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~-~~~~~~~~~~~~f~~~p~~~~~f~~---~~~~~~~~~~a~Pn~~H~~La~ 76 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWE-EHRVEDVATPEGFDRDPELVQAFYN---ARRRQLQQPEIQPNAAHLALAK 76 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEET-TEEHHHHSSHHHHHHCHHHHHHHHH---HHHHHHTSTTCCCCHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCcc-CCCHhHcccHHHHhhCHHHHHHHHH---HHHHHhhhcCCCCCHHHHHHHH
Confidence 68999999999999999999999999997 4654 467778777654444443 222333 35999999999999
Q ss_pred HHH-cCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCC
Q 019598 197 LEK-AGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 274 (338)
Q Consensus 197 Le~-~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~ 274 (338)
|++ .|++.+||||||||||++||+ +|+||||++..++|++|++.|+++.
T Consensus 77 L~~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~----------------------------- 127 (235)
T 1s5p_A 77 LQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG----------------------------- 127 (235)
T ss_dssp HHHHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS-----------------------------
T ss_pred HHHhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh-----------------------------
Confidence 999 699999999999999999999 7999999999999999998764321
Q ss_pred cCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 275 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 275 ~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
+++ ...+|+|+.|||.|||+||||||+ | +.++++.+.+++.|+
T Consensus 128 -----------~~~------~~~~p~c~~Cgg~lrP~vv~FGE~-p-~~~~~a~~~~~~adl 170 (235)
T 1s5p_A 128 -----------DVT------PEDKCHCCQFPAPLRPHVVWFGEM-P-LGMDEIYMALSMADI 170 (235)
T ss_dssp -----------CCC------SSCCC-------CEEEEECCTTSC-C-SSHHHHHHHHHHCSE
T ss_pred -----------hcc------CCCCCCCCCCCCeecCcEEEeCCC-H-HHHHHHHHHHhcCCE
Confidence 011 123799999999999999999999 6 578888888877764
No 12
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-43 Score=355.47 Aligned_cols=210 Identities=24% Similarity=0.332 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCC--CC---CC---CCHHHHhhchHHHHHHHHHHHHHHHh
Q 019598 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSS--GF---KP---ITHQQFVRSSRARRRYWARSYAGWRR 181 (338)
Q Consensus 110 ~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~--~~---~~---~~~~~f~~~~~~~~~~wa~~~~~~~~ 181 (338)
..+++|+++|++|++|||+|||||||+||||||||.+|+|.. .+ ++ ++++.|..++ ..||.++ ....
T Consensus 172 ~~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP---~~Fy~~~--r~~~ 246 (492)
T 4iao_A 172 FTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDP---SVFYNIA--NMVL 246 (492)
T ss_dssp CSHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCH---HHHHHHG--GGGC
T ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhCh---HHHHHHH--HHhh
Confidence 568899999999999999999999999999999999999973 11 23 4566777664 4566532 2222
Q ss_pred hhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhh----C
Q 019598 182 FMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKAL----N 254 (338)
Q Consensus 182 ~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~----n 254 (338)
...++||.+|++|++|++.|++.+||||||||||++||+ +|+||||++..++|++|++.++++.+...+... +
T Consensus 247 ~~~~~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~P~C 326 (492)
T 4iao_A 247 PPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLC 326 (492)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCCCBC
T ss_pred CCcCCCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCCCCC
Confidence 236789999999999999999999999999999999997 699999999999999999999887766555322 2
Q ss_pred hhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccC
Q 019598 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPAD 334 (338)
Q Consensus 255 p~~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~ 334 (338)
|.|........ + ....+++++.+.++.. ....|.|+.|||+|||+||||||+||.+.++.+.+.+++.
T Consensus 327 p~Cg~~~~~~~---~------~~~~~~dg~~~~~~~~---~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~a 394 (492)
T 4iao_A 327 PYCYKKRREYF---P------EGYNNKVGVAASQGSM---SERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILEC 394 (492)
T ss_dssp TTTHHHHHHHS---T------TCCCCC--------CC---TTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTC
T ss_pred ccccccccccc---c------cccccccccccccccc---cccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhC
Confidence 23321100000 0 0123455555544322 2347899999999999999999999999999998888888
Q ss_pred CC
Q 019598 335 DY 336 (338)
Q Consensus 335 ~~ 336 (338)
|+
T Consensus 395 DL 396 (492)
T 4iao_A 395 DL 396 (492)
T ss_dssp SE
T ss_pred CE
Confidence 74
No 13
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-42 Score=331.53 Aligned_cols=173 Identities=28% Similarity=0.492 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCC---CCCCCCHHHHhhchHHHHHHHHHHHHHHHhhhcC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSS---GFKPITHQQFVRSSRARRRYWARSYAGWRRFMAA 185 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~---~~~~~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a 185 (338)
+++++.|+++|++|++|||+|||||||+|||||||+.+|+|.. ++.+ ...| .+.++
T Consensus 31 ~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~~~~~~p-------------~~~~--------~f~~a 89 (318)
T 3k35_A 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAP-------------KFDT--------TFESA 89 (318)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHHTTTCCC-------------CCSS--------CTTTC
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhhhccCCH-------------HHHH--------HhhhC
Confidence 6789999999999999999999999999999999999999962 1111 0011 23578
Q ss_pred CCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHh
Q 019598 186 QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIE 262 (338)
Q Consensus 186 ~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~ 262 (338)
+||.+|++|++|+++|++.+||||||||||++||+ +|+||||++..++|++|++.|.++.+...
T Consensus 90 ~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~------------- 156 (318)
T 3k35_A 90 RPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGT------------- 156 (318)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSC-------------
T ss_pred CCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhh-------------
Confidence 99999999999999999999999999999999998 69999999999999999998865432100
Q ss_pred hhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 263 SLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
....++++. ......+.|+.|||+|||+||||||++|.+.++.+.+.+.++|+
T Consensus 157 --------------~~~~p~~~~-------C~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDl 209 (318)
T 3k35_A 157 --------------MGLKATGRL-------CTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADL 209 (318)
T ss_dssp --------------CSSCEEEEE-------CCC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSE
T ss_pred --------------cccCCCCCc-------CcccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCE
Confidence 000010000 00012355778999999999999999999999999999988874
No 14
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=1.1e-41 Score=331.50 Aligned_cols=173 Identities=28% Similarity=0.504 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCC---CCCCCCHHHHhhchHHHHHHHHHHHHHHHhhhcC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSS---GFKPITHQQFVRSSRARRRYWARSYAGWRRFMAA 185 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~---~~~~~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a 185 (338)
+++++.|+++|++|++|||+||||||++|||||||+.+|+|.. ++.+ . |+ ..+.++
T Consensus 31 ~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~~~~~~p-------------~-~~-------~~f~~a 89 (355)
T 3pki_A 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAP-------------K-FD-------TTFESA 89 (355)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHHHTTCCC-------------C-CS-------SCTTTC
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccchhhccCCh-------------H-HH-------HHHhhC
Confidence 5789999999999999999999999999999999999999962 1111 0 00 123578
Q ss_pred CCCHHHHHHHHHHHcCCcceeeecccchhHhhhCC---CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHh
Q 019598 186 QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIE 262 (338)
Q Consensus 186 ~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~---kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~ 262 (338)
+||.+|++|++|+++|++.+||||||||||++||+ +|+||||++..++|++|++.|.++.+...+
T Consensus 90 ~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~------------ 157 (355)
T 3pki_A 90 RPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTM------------ 157 (355)
T ss_dssp CCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCC------------
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhc------------
Confidence 99999999999999999999999999999999998 699999999999999999988654321000
Q ss_pred hhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598 263 SLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY 336 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~ 336 (338)
...+++.. ......+.|+.|||+|||+||||||++|.+.++.+.+.+.++|+
T Consensus 158 ---------------~~~~~~~~-------C~~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDl 209 (355)
T 3pki_A 158 ---------------GLKATGRL-------CTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADL 209 (355)
T ss_dssp ---------------SSCEEEEE-------CCCCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSE
T ss_pred ---------------ccCCCCCc-------cccccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCE
Confidence 00000000 00012356789999999999999999999999999998888774
No 15
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=82.79 E-value=0.99 Score=35.05 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=25.6
Q ss_pred CCCCCCCCCeeccceeecCCCCChhhHHHHhhccc
Q 019598 298 IPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVP 332 (338)
Q Consensus 298 iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~ 332 (338)
+-+||.||.. |+|-.||.+-.+..|+++-
T Consensus 51 ~FkCP~CgEE------FyG~~Lp~~EaeKVFELLN 79 (95)
T 2k5c_A 51 VFKCPVCGEE------FYGKTLPRREAEKVFELLN 79 (95)
T ss_dssp EEECTTTCCE------EETTSSCTTTHHHHHHHHH
T ss_pred hhcCCCccHH------HhcccCChHHHHHHHHHHH
Confidence 5689999987 8999999999999999874
No 16
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=81.08 E-value=0.67 Score=39.52 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=15.5
Q ss_pred CCCeEEeecccC-----ceecCCCCcccc
Q 019598 219 GSNPLELHGTVY-----TVVCLDCGFSFC 242 (338)
Q Consensus 219 G~kviELHGsl~-----~~qC~~C~~~~~ 242 (338)
|.+++-++.-+. ..+|..|++.+.
T Consensus 115 Gv~v~~~~~~i~~~~~~~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 115 GLRFRTLKRGIKKVIKWRYVCIGCGRKFS 143 (165)
T ss_dssp TCCEECCSCCCSSCCCCCEEESSSCCEES
T ss_pred CCeEEchhhhccccccEEEECCCCCCccc
Confidence 555555553333 578999998863
No 17
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=77.28 E-value=0.82 Score=40.27 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.4
Q ss_pred cCceecCCCCcccc
Q 019598 229 VYTVVCLDCGFSFC 242 (338)
Q Consensus 229 l~~~qC~~C~~~~~ 242 (338)
...++|..||+.+.
T Consensus 153 ~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 153 ATKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CceEEECCCCCEee
Confidence 44799999999874
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.92 E-value=2.3 Score=38.90 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=15.7
Q ss_pred CCCeEEeecccCceecCCCCcccchh
Q 019598 219 GSNPLELHGTVYTVVCLDCGFSFCRD 244 (338)
Q Consensus 219 G~kviELHGsl~~~qC~~C~~~~~r~ 244 (338)
|.-|+.++|. .|..|+...+..
T Consensus 190 g~avv~v~~~----~C~GC~~~lppq 211 (256)
T 3na7_A 190 NTSIVTIKKQ----ACGGCFIRLNDK 211 (256)
T ss_dssp GGSEEECBTT----BCTTTCCBCCHH
T ss_pred CceEEEeeCC----ccCCCCeeeCHH
Confidence 3357888875 899999876543
No 19
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=72.02 E-value=3.6 Score=29.24 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=10.9
Q ss_pred CceecCCCCcccc
Q 019598 230 YTVVCLDCGFSFC 242 (338)
Q Consensus 230 ~~~qC~~C~~~~~ 242 (338)
..++|..|++.|+
T Consensus 2 ~~y~C~vCGyvYd 14 (54)
T 4rxn_A 2 KKYTCTVCGYIYD 14 (54)
T ss_dssp CCEEETTTCCEEC
T ss_pred CceECCCCCeEEC
Confidence 4679999999985
No 20
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=71.79 E-value=2.2 Score=36.42 Aligned_cols=27 Identities=4% Similarity=0.063 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccc
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGIST 135 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISa 135 (338)
..++++++++|++|++-||+.|.|+..
T Consensus 21 ~~~v~~aa~~L~~AkrPvil~G~g~~~ 47 (170)
T 3cf4_G 21 AVSPEMAAKIISKAKRPLLMVGTLALD 47 (170)
T ss_dssp ECCHHHHHHHHHHCSSEEEEECSTTCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 355899999999999999999999863
No 21
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=70.14 E-value=2.7 Score=28.94 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=11.5
Q ss_pred cCceecCCCCcccc
Q 019598 229 VYTVVCLDCGFSFC 242 (338)
Q Consensus 229 l~~~qC~~C~~~~~ 242 (338)
+..++|..|++.|+
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 45689999999885
No 22
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=67.38 E-value=2.8 Score=37.25 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=11.2
Q ss_pred cCceecCCCCccc
Q 019598 229 VYTVVCLDCGFSF 241 (338)
Q Consensus 229 l~~~qC~~C~~~~ 241 (338)
...++|..||+.+
T Consensus 169 ~~~~~C~~CG~i~ 181 (202)
T 1yuz_A 169 DKFHLCPICGYIH 181 (202)
T ss_dssp CCEEECSSSCCEE
T ss_pred CcEEEECCCCCEE
Confidence 4689999999986
No 23
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=67.22 E-value=3 Score=33.76 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=13.0
Q ss_pred EEeecccCceecCCCCccc
Q 019598 223 LELHGTVYTVVCLDCGFSF 241 (338)
Q Consensus 223 iELHGsl~~~qC~~C~~~~ 241 (338)
+++.---..++|.+|++.+
T Consensus 65 L~i~~~p~~~~C~~CG~~~ 83 (119)
T 2kdx_A 65 LDIVDEKVELECKDCSHVF 83 (119)
T ss_dssp EEEEEECCEEECSSSSCEE
T ss_pred EEEEeccceEEcCCCCCEE
Confidence 3333334478999999876
No 24
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=64.06 E-value=2.9 Score=29.01 Aligned_cols=13 Identities=23% Similarity=0.421 Sum_probs=8.7
Q ss_pred ceecCCCCcccch
Q 019598 231 TVVCLDCGFSFCR 243 (338)
Q Consensus 231 ~~qC~~C~~~~~r 243 (338)
...|..|++.++.
T Consensus 3 iY~C~rCg~~fs~ 15 (48)
T 4ayb_P 3 VYRCGKCWKTFTD 15 (48)
T ss_dssp --CCCCTTTTCCC
T ss_pred EEEeeccCCCccH
Confidence 4579999987653
No 25
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=63.18 E-value=9.6 Score=26.68 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=11.0
Q ss_pred CceecCCCCcccc
Q 019598 230 YTVVCLDCGFSFC 242 (338)
Q Consensus 230 ~~~qC~~C~~~~~ 242 (338)
..++|..|++.|+
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4689999999885
No 26
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=60.44 E-value=3.8 Score=34.26 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=15.6
Q ss_pred EEeecccCceecCCCCcccch
Q 019598 223 LELHGTVYTVVCLDCGFSFCR 243 (338)
Q Consensus 223 iELHGsl~~~qC~~C~~~~~r 243 (338)
+++.---..+.|.+|++.+..
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 62 IEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp EEEEEECCEEEETTTCCEEEG
T ss_pred EEEEecCCcEECCCCCCEEec
Confidence 555555568999999998754
No 27
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=60.00 E-value=7.5 Score=29.89 Aligned_cols=14 Identities=29% Similarity=0.857 Sum_probs=12.0
Q ss_pred cCceecCCCCcccc
Q 019598 229 VYTVVCLDCGFSFC 242 (338)
Q Consensus 229 l~~~qC~~C~~~~~ 242 (338)
...++|..|++.|+
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 56799999999985
No 28
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=58.43 E-value=4 Score=35.32 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=10.4
Q ss_pred CceecCCCCccc
Q 019598 230 YTVVCLDCGFSF 241 (338)
Q Consensus 230 ~~~qC~~C~~~~ 241 (338)
..++|..||+.+
T Consensus 137 ~~~~C~~CG~i~ 148 (170)
T 3pwf_A 137 KVYICPICGYTA 148 (170)
T ss_dssp CEEECTTTCCEE
T ss_pred CeeEeCCCCCee
Confidence 578999999986
No 29
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=57.78 E-value=7.3 Score=27.65 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=11.0
Q ss_pred CceecCCCCcccc
Q 019598 230 YTVVCLDCGFSFC 242 (338)
Q Consensus 230 ~~~qC~~C~~~~~ 242 (338)
..++|..|++.|+
T Consensus 2 ~~y~C~~CGyvYd 14 (55)
T 2v3b_B 2 RKWQCVVCGFIYD 14 (55)
T ss_dssp CEEEETTTCCEEE
T ss_pred CcEEeCCCCeEEC
Confidence 4689999999985
No 30
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=56.42 E-value=6.4 Score=29.36 Aligned_cols=12 Identities=17% Similarity=0.730 Sum_probs=8.9
Q ss_pred CceecCCCCccc
Q 019598 230 YTVVCLDCGFSF 241 (338)
Q Consensus 230 ~~~qC~~C~~~~ 241 (338)
-...|..|+...
T Consensus 27 v~Y~C~~CG~~~ 38 (70)
T 1twf_L 27 LKYICAECSSKL 38 (70)
T ss_dssp CCEECSSSCCEE
T ss_pred EEEECCCCCCcc
Confidence 346899999764
No 31
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=55.82 E-value=8.8 Score=29.88 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=12.2
Q ss_pred cCceecCCCCcccc
Q 019598 229 VYTVVCLDCGFSFC 242 (338)
Q Consensus 229 l~~~qC~~C~~~~~ 242 (338)
...++|..|++.|+
T Consensus 33 m~~y~C~vCGyvYD 46 (87)
T 1s24_A 33 YLKWICITCGHIYD 46 (87)
T ss_dssp CCEEEETTTTEEEE
T ss_pred CceEECCCCCeEec
Confidence 56899999999885
No 32
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=54.19 E-value=12 Score=27.76 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=12.5
Q ss_pred ccCceecCCCCcccc
Q 019598 228 TVYTVVCLDCGFSFC 242 (338)
Q Consensus 228 sl~~~qC~~C~~~~~ 242 (338)
....++|..|++.|+
T Consensus 4 ~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 4 DEGKYECEACGYIYE 18 (70)
T ss_dssp CSSCEEETTTCCEEC
T ss_pred CCceEEeCCCCEEEc
Confidence 456799999999885
No 33
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=50.97 E-value=11 Score=26.40 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=10.3
Q ss_pred ceecCCCCcccc
Q 019598 231 TVVCLDCGFSFC 242 (338)
Q Consensus 231 ~~qC~~C~~~~~ 242 (338)
.++|..|++.|+
T Consensus 2 ~~~C~~CGyvYd 13 (52)
T 1yk4_A 2 KLSCKICGYIYD 13 (52)
T ss_dssp EEEESSSSCEEE
T ss_pred cEEeCCCCeEEC
Confidence 579999999985
No 34
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=41.87 E-value=7.8 Score=30.64 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=12.4
Q ss_pred CcEEEEECCccccc
Q 019598 123 AKLIVLTGAGISTE 136 (338)
Q Consensus 123 k~IVVlTGAGISaa 136 (338)
++|++.+|||+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999976
No 35
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.71 E-value=22 Score=28.60 Aligned_cols=13 Identities=38% Similarity=1.040 Sum_probs=10.6
Q ss_pred cCceecCCCCccc
Q 019598 229 VYTVVCLDCGFSF 241 (338)
Q Consensus 229 l~~~qC~~C~~~~ 241 (338)
+....|.+||+.+
T Consensus 65 v~p~~C~~CG~~F 77 (105)
T 2gmg_A 65 IKPAQCRKCGFVF 77 (105)
T ss_dssp ECCCBBTTTCCBC
T ss_pred EECcChhhCcCee
Confidence 4567999999876
No 36
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.97 E-value=31 Score=28.52 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=35.5
Q ss_pred cCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCCeEEe--ecccCceecCCCCcccchh
Q 019598 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCRD 244 (338)
Q Consensus 184 ~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~kviEL--HGsl~~~qC~~C~~~~~r~ 244 (338)
...+.-.|+.|..|++.|.+..+-..|- ...+++ +..-.++.|..||+..+.+
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~--------~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 112 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKS--------GRRYEIAAKEHHDHIICLHCGKIIEFA 112 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTT--------EEEEEESCSCCCEEEEETTTCCEEEEC
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCC--------ceEEEecCCCCceEEEECCCCCEEEec
Confidence 3456688999999999998876654431 122333 1223579999999986543
No 37
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=32.89 E-value=34 Score=34.04 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.+++++++|.+|++.||+.|.|++
T Consensus 186 ~~~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 186 PEEEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCch
Confidence 3468899999999999999999999975
No 38
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.32 E-value=43 Score=26.98 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=34.1
Q ss_pred cCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCCeEEee--cccCceecCCCCcccchh
Q 019598 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCRD 244 (338)
Q Consensus 184 ~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~kviELH--Gsl~~~qC~~C~~~~~r~ 244 (338)
...+.-.|+.|..|++.|.+..+-..+ |...+++. ..-.++.|.+|++..+.+
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 104 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG--------GHAVFELADSGHHDHMVCVDTGEVIEFM 104 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS--------SSCEEEESSSCCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------CceEEEeCCCCcceEEEECCCCCEEEec
Confidence 345567899999999998876543322 22234431 123468999999986543
No 39
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=31.43 E-value=16 Score=30.70 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=12.3
Q ss_pred ecccCceecCCCCccc
Q 019598 226 HGTVYTVVCLDCGFSF 241 (338)
Q Consensus 226 HGsl~~~qC~~C~~~~ 241 (338)
.|.+.-.+|.+|++.+
T Consensus 42 ~g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIF 57 (145)
T ss_dssp TTCCEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEE
Confidence 4667777999999764
No 40
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=29.10 E-value=23 Score=26.26 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.5
Q ss_pred cccccceeEeeeccc
Q 019598 10 FNQKNTTMLLRLPFF 24 (338)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (338)
.|.+|||...||||-
T Consensus 1 Mn~~NttVyVRlPg~ 15 (69)
T 4hpq_A 1 MNSENTIVYVRVAGR 15 (69)
T ss_dssp CCSSSCEEEEECSSC
T ss_pred CCCCCeEEEEEecCC
Confidence 378899999999973
No 41
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=29.02 E-value=43 Score=33.80 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 106 ~~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
.+..+.+++++++|.+|++.||+.|.|++
T Consensus 196 ~~~~~~i~~~~~~l~~A~rPvIl~G~g~~ 224 (603)
T 4feg_A 196 EPDVQAVTRLTQTLLAAERPLIYYGIGAR 224 (603)
T ss_dssp BCCHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEECCCch
Confidence 34568899999999999999999999984
No 42
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=28.21 E-value=15 Score=29.08 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=12.5
Q ss_pred CcEEEEECCccccc
Q 019598 123 AKLIVLTGAGISTE 136 (338)
Q Consensus 123 k~IVVlTGAGISaa 136 (338)
++|++.+|+|+|++
T Consensus 22 kkIlvvC~sG~gTS 35 (113)
T 1tvm_A 22 RKIIVACGGAVATS 35 (113)
T ss_dssp EEEEEESCSCSSHH
T ss_pred cEEEEECCCCHHHH
Confidence 57999999999976
No 43
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.04 E-value=38 Score=24.68 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=7.9
Q ss_pred CCCCCCCCCe
Q 019598 298 IPTCQKCNGV 307 (338)
Q Consensus 298 iP~Cp~CgG~ 307 (338)
.-+||.||..
T Consensus 38 ~iRC~~CG~R 47 (63)
T 3h0g_L 38 VIRCRECGHR 47 (63)
T ss_dssp CCCCSSSCCC
T ss_pred ceECCCCCcE
Confidence 4699999963
No 44
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=26.08 E-value=47 Score=33.11 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..+.++++++.|.+|++.||+.|.|..
T Consensus 198 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 225 (568)
T 2c31_A 198 PAEDAIARAADLIKNAKRPVIMLGKGAA 225 (568)
T ss_dssp CCHHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcccc
Confidence 4568899999999999999999999985
No 45
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.82 E-value=62 Score=26.61 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=34.1
Q ss_pred cCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCCeEEee--cccCceecCCCCcccchh
Q 019598 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCRD 244 (338)
Q Consensus 184 ~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~kviELH--Gsl~~~qC~~C~~~~~r~ 244 (338)
...+.-.|+.|..|++.|.+..+-..+ |...+++. ..-.++.|..|++..+.+
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 103 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEG--------GKSVFELSTQHHHDHLVCLDCGEVIEFS 103 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGG--------GCEEEEECCSSCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------CceEEEecCCCceeEEEECCCCCEEEec
Confidence 345567899999999999876553322 12234431 223468999999986543
No 46
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=25.54 E-value=51 Score=33.12 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 108 ~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
..++++++++.|.+|++.||+.|.|..
T Consensus 200 ~~~~i~~~~~~l~~a~rpvIl~G~g~~ 226 (590)
T 1ybh_A 200 EDSHLEQIVRLISESKKPVLYVGGGCL 226 (590)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CHHHHHHHHHHHHhCCCcEEEECcccc
Confidence 568899999999999999999999975
No 47
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=25.41 E-value=22 Score=29.68 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=9.6
Q ss_pred cccCceecCCCCccc
Q 019598 227 GTVYTVVCLDCGFSF 241 (338)
Q Consensus 227 Gsl~~~qC~~C~~~~ 241 (338)
|.+.-.+|.+|+..+
T Consensus 43 grL~~~rC~~CG~~~ 57 (145)
T 3irb_A 43 NKIIGSKCSKCGRIF 57 (145)
T ss_dssp TCCEEEECTTTCCEE
T ss_pred CeEEEEEeCCCCcEE
Confidence 344455788888753
No 48
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.77 E-value=34 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.2
Q ss_pred CCCCCCCCCeeccc
Q 019598 298 IPTCQKCNGVLKPD 311 (338)
Q Consensus 298 iP~Cp~CgG~LrP~ 311 (338)
+-.||.|+|.|+-+
T Consensus 10 iL~CP~ck~~L~~~ 23 (67)
T 2jny_A 10 VLACPKDKGPLRYL 23 (67)
T ss_dssp CCBCTTTCCBCEEE
T ss_pred HhCCCCCCCcCeEe
Confidence 77899999887654
No 49
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.38 E-value=68 Score=25.58 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCCeEEe--ecccCceecCCCCcccch
Q 019598 185 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 243 (338)
Q Consensus 185 a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~kviEL--HGsl~~~qC~~C~~~~~r 243 (338)
..+...|+.|..|++.|.+..+-..| |...+++ ++.-..+.|.+|++..+.
T Consensus 43 is~~TVYR~L~~L~e~Glv~~~~~~~--------~~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 43 IGLTTVYRTLQSMASSGLVDTLHTDT--------GESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp CCHHHHHHHHHHHHTTTSEEEEECTT--------SCEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred CCHhhHHHHHHHHHHCCCEEEEEeCC--------CceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 44558899999999988876554433 2223443 123457899999998654
No 50
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=24.30 E-value=31 Score=29.57 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCcEEEEECCcccccCCCCC
Q 019598 113 NQLYQFFDNSAKLIVLTGAGISTECGIPD 141 (338)
Q Consensus 113 ~~L~~~I~~Ak~IVVlTGAGISaaSGIPd 141 (338)
+++.++.++++.-||++|||+++ +||.
T Consensus 41 ~~~~~~~~~a~~~ViIa~AG~aa--~Lpg 67 (157)
T 2ywx_A 41 ELVEEIVKNSKADVFIAIAGLAA--HLPG 67 (157)
T ss_dssp HHHHHHHHHCCCSEEEEEEESSC--CHHH
T ss_pred HHHHHHHHhcCCCEEEEEcCchh--hhHH
Confidence 46677777776689999999974 4654
No 51
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.23 E-value=30 Score=32.63 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=13.3
Q ss_pred ecccCceecCCCCcccc
Q 019598 226 HGTVYTVVCLDCGFSFC 242 (338)
Q Consensus 226 HGsl~~~qC~~C~~~~~ 242 (338)
++..++++|+-|+..+.
T Consensus 203 ~~G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 203 ETGLRYLSCSLCACEWH 219 (309)
T ss_dssp -CCEEEEEETTTCCEEE
T ss_pred CCCcEEEEeCCCCCEEe
Confidence 35778999999998864
No 52
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.09 E-value=23 Score=28.19 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=13.0
Q ss_pred cCCcEEEEECCccccc
Q 019598 121 NSAKLIVLTGAGISTE 136 (338)
Q Consensus 121 ~Ak~IVVlTGAGISaa 136 (338)
+..+|+++++||+|++
T Consensus 5 ~~mkIlL~C~aGmSTs 20 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSA 20 (108)
T ss_dssp CCEEEEEEESSSSHHH
T ss_pred cCceEEEECCCCCCHH
Confidence 3457999999999975
No 53
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=23.76 E-value=44 Score=28.20 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECG 138 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSG 138 (338)
.++++++++.|.+|+.-|++.|.|-|...+
T Consensus 31 ~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A 60 (201)
T 3fxa_A 31 EEALVKTVEKIAECTGKIVVAGCGTSGVAA 60 (201)
T ss_dssp HHHHHHHHHHHHHCSSCEEEECCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHHH
Confidence 478999999999996567888999886543
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=23.62 E-value=50 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=17.8
Q ss_pred CCCCCCCCeeccceeecCCCCChhhHHHHhhcc
Q 019598 299 PTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLV 331 (338)
Q Consensus 299 P~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~ 331 (338)
+.||.|+..|... +-+++..+...++.+
T Consensus 64 ~~cP~~~~~l~~~-----~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 64 PTDPFNRQTLTES-----MLEPVPELKEQIQAW 91 (100)
T ss_dssp SBCSSSCCBCCTT-----SSEECHHHHHHHHHH
T ss_pred CCCCCCCCCCChh-----hceECHHHHHHHHHH
Confidence 6899999887753 334555555555444
No 55
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=23.36 E-value=18 Score=29.39 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=14.7
Q ss_pred hcCCcEEEEECCcccccC
Q 019598 120 DNSAKLIVLTGAGISTEC 137 (338)
Q Consensus 120 ~~Ak~IVVlTGAGISaaS 137 (338)
.+-++|++.+|+||+++.
T Consensus 11 ~~~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 11 SHVRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCCCEEEECCSSSSHHHH
T ss_pred ccccEEEEECCCcHHHHH
Confidence 345789999999999874
No 56
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=23.31 E-value=61 Score=32.39 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
+..++++++++.|.+|++.||+.|.|..
T Consensus 192 ~~~~~i~~~~~~l~~a~rpvil~G~g~~ 219 (566)
T 1ozh_A 192 APDDAIDQVAKLIAQAKNPIFLLGLMAS 219 (566)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGG
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 4467899999999999999999999974
No 57
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.90 E-value=44 Score=27.42 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCCeEEee--cccCceecCCCCcccchh
Q 019598 185 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCRD 244 (338)
Q Consensus 185 a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~kviELH--Gsl~~~qC~~C~~~~~r~ 244 (338)
..+.-.|+.|..|++.|.+..+...| + ...+++. ..-.++.|.+||+..+.+
T Consensus 50 is~~TVYR~L~~L~e~Glv~~i~~~~--~------~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 103 (145)
T 3eyy_A 50 INISTVYRTLELLEELGLVSHAHLGH--G------APTYHLADRHHHIHLVCRDCTNVIEAD 103 (145)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEEECGG--G------CEEEEETTSCCSEEEEESSSSCEEEEC
T ss_pred CCHhHHHHHHHHHHHCCcEEEEEeCC--C------ceEEEeCCCCCceEEEECCCCCEEEec
Confidence 44558899999999999876654432 1 1123321 223568999999986543
No 58
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.81 E-value=37 Score=23.90 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.2
Q ss_pred CCCCCCCCCeeccc
Q 019598 298 IPTCQKCNGVLKPD 311 (338)
Q Consensus 298 iP~Cp~CgG~LrP~ 311 (338)
+-.||.|+|.|.-+
T Consensus 10 iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 10 ILACPACHAPLEER 23 (56)
T ss_dssp SCCCSSSCSCEEEE
T ss_pred heeCCCCCCcceec
Confidence 67999999987644
No 59
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.61 E-value=71 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccCC
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTECG 138 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaaSG 138 (338)
.++++++++.|.+|+ -|++.|.|-|...+
T Consensus 26 ~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a 54 (187)
T 3sho_A 26 PEAIEAAVEAICRAD-HVIVVGMGFSAAVA 54 (187)
T ss_dssp HHHHHHHHHHHHHCS-EEEEECCGGGHHHH
T ss_pred HHHHHHHHHHHHhCC-EEEEEecCchHHHH
Confidence 578999999999997 57778999887654
No 60
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.32 E-value=29 Score=27.12 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=11.4
Q ss_pred cEEEEECCccccc
Q 019598 124 KLIVLTGAGISTE 136 (338)
Q Consensus 124 ~IVVlTGAGISaa 136 (338)
+|++.+|+|+|++
T Consensus 6 kIlvvC~~G~~TS 18 (109)
T 2l2q_A 6 NILLVCGAGMSTS 18 (109)
T ss_dssp EEEEESSSSCSSC
T ss_pred EEEEECCChHhHH
Confidence 4899999999876
No 61
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=21.83 E-value=36 Score=25.12 Aligned_cols=14 Identities=43% Similarity=0.809 Sum_probs=10.0
Q ss_pred CCCCCCCCCeeccc
Q 019598 298 IPTCQKCNGVLKPD 311 (338)
Q Consensus 298 iP~Cp~CgG~LrP~ 311 (338)
+-.||.|+|.|+-+
T Consensus 8 iL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 8 ILACPICKGPLKLS 21 (69)
T ss_dssp TCCCTTTCCCCEEC
T ss_pred heeCCCCCCcCeEe
Confidence 56788888877643
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=21.79 E-value=54 Score=28.91 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=15.9
Q ss_pred CCCCCCCeeccceeecCCCCChhhHHHHhhc
Q 019598 300 TCQKCNGVLKPDVSTSLSLIEVNSISIFFTL 330 (338)
Q Consensus 300 ~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~ 330 (338)
.||.|+..+.+.-+ +++..+...++.
T Consensus 245 ~cP~~~~~~~~~~l-----~~n~~l~~~i~~ 270 (281)
T 2c2l_A 245 FNPVTRSPLTQEQL-----IPNLAMKEVIDA 270 (281)
T ss_dssp SCTTTCCCCCGGGC-----EECHHHHHHHHH
T ss_pred CCcCCCCCCchhcC-----cccHHHHHHHHH
Confidence 49999988875432 355555554443
No 63
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=21.32 E-value=81 Score=33.41 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=23.4
Q ss_pred CCCCCCCCCeeccceeec---CCCCChhhHHHHhhccccCC
Q 019598 298 IPTCQKCNGVLKPDVSTS---LSLIEVNSISIFFTLVPADD 335 (338)
Q Consensus 298 iP~Cp~CgG~LrP~VV~F---GE~l~~~~~~~~~~~~~~~~ 335 (338)
.-.||.||=. +-|. |+.+..+.++++.+++.+-.
T Consensus 178 p~aC~~CGP~----l~l~~~~~~~~~~~~i~~a~~~l~~G~ 214 (772)
T 4g9i_A 178 PTACPVCGPS----YRLYTSDGQEIYGDPLRKAAELIDKGY 214 (772)
T ss_dssp TCCCTTTSCC----EEEESSSCBCCTTHHHHHHHHHHTTSC
T ss_pred CCCCccCCce----EEEEcCCCCeechHHHHHHHHHHHcCC
Confidence 3489999943 3333 56677788888888876543
No 64
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.72 E-value=37 Score=25.08 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=10.7
Q ss_pred CCCCCCCCCeeccc
Q 019598 298 IPTCQKCNGVLKPD 311 (338)
Q Consensus 298 iP~Cp~CgG~LrP~ 311 (338)
+-.||.|+|.|+-+
T Consensus 8 iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 8 ILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCBCTTTCCBEEEE
T ss_pred heECCCCCCcCEEe
Confidence 67888888877654
No 65
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=20.63 E-value=75 Score=24.36 Aligned_cols=28 Identities=11% Similarity=-0.107 Sum_probs=17.8
Q ss_pred CCCCCCCCeeccceeecCCCCChhhHHHHhhcc
Q 019598 299 PTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLV 331 (338)
Q Consensus 299 P~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~ 331 (338)
+.||.|+..|... +-+++..+...++.+
T Consensus 58 ~~cP~~~~~l~~~-----~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 58 QTDPFNRSPLTMD-----QIRPNTELKEKIQRW 85 (98)
T ss_dssp CBCTTTCSBCCTT-----TSEECHHHHHHHHHH
T ss_pred CCCCCCCCCCChh-----hceEcHHHHHHHHHH
Confidence 5899999888753 334555555555443
No 66
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=20.58 E-value=44 Score=33.24 Aligned_cols=27 Identities=7% Similarity=0.345 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHhcCCcEEEEECCccc
Q 019598 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (338)
Q Consensus 108 ~~~~i~~L~~~I~~Ak~IVVlTGAGIS 134 (338)
..+.++++++.|.+|++.||+.|.|+.
T Consensus 197 ~~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (564)
T 2q28_A 197 CPKSVTSAISLLAKAERPLIILGKGAA 223 (564)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CHHHHHHHHHHHHcCCCcEEEECcccc
Confidence 457899999999999999999999985
No 67
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.53 E-value=43 Score=27.61 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCcEEEEECCcccccCC
Q 019598 111 DINQLYQFFDNSAKLIVLTGAGISTECG 138 (338)
Q Consensus 111 ~i~~L~~~I~~Ak~IVVlTGAGISaaSG 138 (338)
+++++++.|.+++.-|++.|.|-|...+
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a 64 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHIG 64 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHHH
Confidence 8999999999997567778999887644
No 68
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=20.37 E-value=73 Score=32.02 Aligned_cols=27 Identities=26% Similarity=0.624 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEECCcc
Q 019598 107 PSIEDINQLYQFFDNSAKLIVLTGAGI 133 (338)
Q Consensus 107 ~~~~~i~~L~~~I~~Ak~IVVlTGAGI 133 (338)
+..++++++++.|.+|++.||+.|.|+
T Consensus 190 ~~~~~i~~~~~~l~~a~rpvil~G~g~ 216 (590)
T 1v5e_A 190 PAAQDIDAAVELLNNSKRPVIYAGIGT 216 (590)
T ss_dssp CCHHHHHHHHHHHHHCSSEEEEECGGG
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 446889999999999999999999998
No 69
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.26 E-value=36 Score=25.00 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=10.2
Q ss_pred CCCCCCCCCeeccc
Q 019598 298 IPTCQKCNGVLKPD 311 (338)
Q Consensus 298 iP~Cp~CgG~LrP~ 311 (338)
+-.||.|+|.|+-+
T Consensus 8 iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 8 ILVCPVTKGRLEYH 21 (68)
T ss_dssp CCBCSSSCCBCEEE
T ss_pred heECCCCCCcCeEe
Confidence 66788888877654
No 70
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=20.18 E-value=54 Score=32.72 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCccccc
Q 019598 109 IEDINQLYQFFDNSAKLIVLTGAGISTE 136 (338)
Q Consensus 109 ~~~i~~L~~~I~~Ak~IVVlTGAGISaa 136 (338)
.++++++++.|.+|++.||+.|.|+..+
T Consensus 215 ~~~i~~~~~~l~~a~rpvil~G~g~~~~ 242 (570)
T 2vbf_A 215 QVILSKIEESLKNAQKPVVIAGHEVISF 242 (570)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCEEEECcCcccc
Confidence 4679999999999999999999998643
Done!