BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019600
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 142/309 (45%), Gaps = 20/309 (6%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 22 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 81
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 82 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 141
Query: 140 QL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ + ++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q
Sbjct: 142 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 200
Query: 199 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXX 256
F+NH VL+KV++VGE+ VV+R SL + + + F VS
Sbjct: 201 NFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELD 260
Query: 257 XXPCVAXXXXXXXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 316
V G+ LF +DII + T Q VIDIN FPGY + E
Sbjct: 261 KIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSE 319
Query: 317 YEHIFTDFL 325
+ FTD L
Sbjct: 320 F---FTDLL 325
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 142/309 (45%), Gaps = 20/309 (6%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 21 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 80
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 81 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 140
Query: 140 QL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ + ++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q
Sbjct: 141 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 199
Query: 199 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXX 256
F+NH VL+KV++VGE+ VV+R SL + + + F VS
Sbjct: 200 NFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELD 259
Query: 257 XXPCVAXXXXXXXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 316
V G+ LF +DII + T Q VIDIN FPGY + E
Sbjct: 260 KIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSE 318
Query: 317 YEHIFTDFL 325
+ FTD L
Sbjct: 319 F---FTDLL 324
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 130 bits (327), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 139/309 (44%), Gaps = 20/309 (6%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G V ++ +RP+ +QGP D+++HKLT
Sbjct: 11 VGYWLSEKKIKKLNFQAFAELCRKRGXEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 70
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKV-DVP 138
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 71 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYXEDDRICSPP 130
Query: 139 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ ++ K GLT P + K VA G+ SHE ++ ++Q L ++PP V+Q
Sbjct: 131 FXELTSLCGDDTXRLLEKNGLTFPFICKTRVAHGT-NSHEXAIVFNQEGLNAIQPPCVVQ 189
Query: 199 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXX 256
F+NH VL+KV++VGE+ VV+R SL + + + F VS
Sbjct: 190 NFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELD 249
Query: 257 XXPCVAXXXXXXXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 316
V G+ LF +DII + T Q VIDIN FPGY + E
Sbjct: 250 KIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSE 308
Query: 317 YEHIFTDFL 325
+ FTD L
Sbjct: 309 F---FTDLL 314
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 104/256 (40%), Gaps = 25/256 (9%)
Query: 91 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSI 150
+ +Y + HP+V L+ +H+ S + + + + N+ + +P + + +
Sbjct: 74 MRKYEKDHPKVLFLES----SAIHDMMSSREEINALLIKNN---IPIPNSFSV-KSKEEV 125
Query: 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKV 210
++ L LP + KP A G+ +H++ + +Q + + P + Q ++NH + KV
Sbjct: 126 IQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKV 185
Query: 211 YIVGEAIKVVRRFSLPDVTK-------------QD-LSTSAGVFRFPRV--SCXXXXXXX 254
+ +G +K R SLP+V + +D LS GV + +
Sbjct: 186 FCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSK 245
Query: 255 XXXXPCVAXXXXXXXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKM 314
P + G++L +D I+E+ + V+D+N FP YG
Sbjct: 246 ILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGNPL-VVDVNVFPSYGGK 304
Query: 315 PEYEHIFTDFLLSLTQ 330
+++ L T+
Sbjct: 305 VDFDWFVEKVALCYTE 320
>pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase
Trma In Complex With 19 Nucleotide T-Arm Analogue
pdb|3BT7|B Chain B, Structure Of E. Coli 5-Methyluridine Methyltransferase
Trma In Complex With 19 Nucleotide T-Arm Analogue
Length = 369
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGIL---FVAIDQNRPLSDQGPFDIVLH 80
Q +S++ V + S+ + + G+ RN +L ID LS+Q ++ H
Sbjct: 70 QTKSRIRVDSFPAASELINQLMTAMIAGV-RNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 128
Query: 81 KLTGKEWRQILEEYR 95
K EWRQ E R
Sbjct: 129 KKLDDEWRQEAEALR 143
>pdb|3EDY|A Chain A, Crystal Structure Of The Precursor Form Of Human
Tripeptidyl-Peptidase 1
Length = 544
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 111 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 170
Q++ ++Q V+D + S YGK L +E ++ D+V + LTL V K L+A
Sbjct: 37 QNVERLSELVQAVSDPS-SPQYGKY-----LTLE----NVADLVRPSPLTLHTVQKWLLA 86
Query: 171 DGSAKSHEL---SLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPD 227
G+ K H + S+++ E L EF ++ G + ++V + + LP
Sbjct: 87 AGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVV----RSPHPYQLPQ 142
Query: 228 VTKQDLSTSAGVFRFPRVS 246
+ G+ RFP S
Sbjct: 143 ALAPHVDFVGGLHRFPPTS 161
>pdb|3EE6|A Chain A, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
pdb|3EE6|B Chain B, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
Length = 571
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 111 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 170
Q++ ++Q V+D + S YGK L +E ++ D+V + LTL V K L+A
Sbjct: 56 QNVERLSELVQAVSDPS-SPQYGKY-----LTLE----NVADLVRPSPLTLHTVQKWLLA 105
Query: 171 DGSAKSHEL---SLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPD 227
G+ K H + S+++ E L EF ++ G + ++V + + LP
Sbjct: 106 AGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVV----RSPHPYQLPQ 161
Query: 228 VTKQDLSTSAGVFRFPRVS 246
+ G+ RFP S
Sbjct: 162 ALAPHVDFVGGLHRFPPTS 180
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Transcription Elongation Factors Spt4-Spt5ngn Domain
Length = 200
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169
++ P+Q VIE+ + +PD+ + L +P+ PL+
Sbjct: 154 IEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLL 188
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 81 KLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ 140
+L GK+ + + R++ P VT++ PP +++ + + Q + D++ N +V V +
Sbjct: 978 QLPGKKVSEYIAMLRRSKPGVTLISPP-PHHDIYSIEDLAQLIYDLHQINPEAQVSV--K 1034
Query: 141 LVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQE 199
LV E +I V KA + ++ G++ + A + L E VL E
Sbjct: 1035 LVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLME 1093
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,644,968
Number of Sequences: 62578
Number of extensions: 332141
Number of successful extensions: 825
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 24
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)