Query 019600
Match_columns 338
No_of_seqs 188 out of 478
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 4.3E-88 9.4E-93 641.1 25.1 303 25-327 3-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 1E-80 2.3E-85 597.4 34.0 314 20-333 12-328 (328)
3 PRK10446 ribosomal protein S6 100.0 4.1E-28 8.9E-33 231.6 26.0 251 44-333 13-294 (300)
4 COG0189 RimK Glutathione synth 100.0 1.6E-28 3.6E-33 236.1 22.2 233 56-329 61-315 (318)
5 TIGR02144 LysX_arch Lysine bio 100.0 1.7E-27 3.8E-32 223.9 25.7 244 46-329 12-279 (280)
6 TIGR00768 rimK_fam alpha-L-glu 100.0 3.1E-26 6.7E-31 214.0 23.8 233 45-316 12-263 (277)
7 PF08443 RimK: RimK-like ATP-g 99.9 1.9E-25 4.1E-30 200.0 15.3 169 114-318 2-178 (190)
8 PRK01372 ddl D-alanine--D-alan 99.9 2.8E-22 6.1E-27 190.9 26.0 237 45-314 24-275 (304)
9 TIGR01380 glut_syn glutathione 99.9 2.3E-22 5E-27 193.4 22.2 252 31-331 2-310 (312)
10 TIGR01205 D_ala_D_alaTIGR D-al 99.9 9E-22 2E-26 188.2 25.7 241 45-315 19-291 (315)
11 PRK12458 glutathione synthetas 99.9 8E-22 1.7E-26 191.6 23.5 247 42-332 9-328 (338)
12 PRK05246 glutathione synthetas 99.9 1.3E-21 2.7E-26 188.5 22.7 251 31-329 3-313 (316)
13 TIGR03103 trio_acet_GNAT GNAT- 99.9 9.9E-21 2.2E-25 194.5 25.6 236 44-315 240-528 (547)
14 PRK14571 D-alanyl-alanine synt 99.9 2E-20 4.4E-25 178.3 24.5 232 48-318 23-274 (299)
15 PRK14570 D-alanyl-alanine synt 99.9 7.7E-20 1.7E-24 179.4 22.9 218 74-318 87-325 (364)
16 PRK01966 ddl D-alanyl-alanine 99.9 1.6E-19 3.5E-24 175.0 23.9 239 49-316 27-308 (333)
17 PRK14016 cyanophycin synthetas 99.8 8.3E-20 1.8E-24 193.3 22.1 233 48-314 164-452 (727)
18 PRK14569 D-alanyl-alanine synt 99.8 2.1E-19 4.6E-24 171.5 22.2 232 49-317 27-273 (296)
19 PRK14568 vanB D-alanine--D-lac 99.8 3.3E-19 7.2E-24 173.4 22.5 211 74-317 90-318 (343)
20 PRK14572 D-alanyl-alanine synt 99.8 5.3E-19 1.2E-23 172.3 23.5 216 74-318 88-324 (347)
21 PRK02471 bifunctional glutamat 99.8 7.1E-19 1.5E-23 186.2 25.6 236 43-312 431-729 (752)
22 TIGR02068 cya_phycin_syn cyano 99.8 7.2E-19 1.6E-23 189.4 18.7 228 45-314 160-451 (864)
23 PF07478 Dala_Dala_lig_C: D-al 99.8 1E-19 2.2E-24 165.0 10.3 164 133-318 5-184 (203)
24 TIGR01435 glu_cys_lig_rel glut 99.8 2.2E-17 4.8E-22 173.2 22.1 237 42-312 418-715 (737)
25 KOG1057 Arp2/3 complex-interac 99.8 4.8E-18 1E-22 173.2 16.1 262 29-326 40-340 (1018)
26 TIGR02291 rimK_rel_E_lig alpha 99.8 3.6E-17 7.8E-22 157.0 19.8 195 103-312 25-273 (317)
27 PRK14573 bifunctional D-alanyl 99.7 5.3E-16 1.1E-20 166.6 26.5 265 29-317 451-764 (809)
28 TIGR01142 purT phosphoribosylg 99.7 5.5E-16 1.2E-20 152.1 21.3 230 46-316 11-279 (380)
29 TIGR01161 purK phosphoribosyla 99.7 1.2E-15 2.6E-20 148.7 22.9 231 45-313 10-269 (352)
30 COG1181 DdlA D-alanine-D-alani 99.7 1.9E-15 4.2E-20 145.5 22.3 250 45-318 22-295 (317)
31 PRK06019 phosphoribosylaminoim 99.7 2.3E-15 5E-20 148.1 21.4 230 45-314 13-272 (372)
32 PF13535 ATP-grasp_4: ATP-gras 99.7 1.7E-15 3.8E-20 132.5 14.0 164 112-310 1-180 (184)
33 PRK05294 carB carbamoyl phosph 99.6 2E-14 4.3E-19 158.4 24.2 228 43-310 574-842 (1066)
34 PRK07206 hypothetical protein; 99.6 2.6E-14 5.7E-19 141.9 22.8 230 47-316 15-295 (416)
35 PLN02948 phosphoribosylaminoim 99.6 3.5E-14 7.7E-19 147.0 23.0 243 27-313 20-294 (577)
36 PRK12767 carbamoyl phosphate s 99.6 3.5E-14 7.6E-19 136.3 21.4 168 100-310 95-271 (326)
37 TIGR01369 CPSaseII_lrg carbamo 99.6 5.7E-14 1.2E-18 154.4 24.5 229 43-310 574-842 (1050)
38 PRK06849 hypothetical protein; 99.6 7.1E-14 1.5E-18 138.0 22.5 167 102-310 103-277 (389)
39 PRK09288 purT phosphoribosylgl 99.6 6.2E-14 1.4E-18 138.3 21.3 231 45-316 23-292 (395)
40 PRK08462 biotin carboxylase; V 99.6 5.6E-14 1.2E-18 141.2 18.4 230 43-312 13-298 (445)
41 PRK12833 acetyl-CoA carboxylas 99.6 2E-13 4.4E-18 138.2 20.9 177 100-312 102-299 (467)
42 PRK13790 phosphoribosylamine-- 99.6 1.7E-13 3.7E-18 135.3 19.7 236 47-332 17-277 (379)
43 PRK05586 biotin carboxylase; V 99.6 1.7E-13 3.7E-18 137.9 20.2 179 99-312 98-296 (447)
44 TIGR00514 accC acetyl-CoA carb 99.6 3.7E-13 8E-18 135.5 20.5 230 44-312 12-296 (449)
45 PRK08463 acetyl-CoA carboxylas 99.5 9.5E-13 2.1E-17 133.7 23.0 230 44-312 12-296 (478)
46 PRK02186 argininosuccinate lya 99.5 5.3E-13 1.2E-17 144.7 22.0 229 48-315 18-283 (887)
47 PLN02735 carbamoyl-phosphate s 99.5 7.8E-13 1.7E-17 145.7 23.4 229 48-310 599-877 (1102)
48 PRK12815 carB carbamoyl phosph 99.5 1.1E-12 2.4E-17 144.5 24.5 227 44-310 576-840 (1068)
49 PRK08591 acetyl-CoA carboxylas 99.5 1E-12 2.2E-17 132.1 21.1 232 44-312 12-296 (451)
50 PRK08654 pyruvate carboxylase 99.5 1.5E-12 3.2E-17 132.9 22.3 176 99-312 98-295 (499)
51 PLN02735 carbamoyl-phosphate s 99.5 7.2E-13 1.6E-17 146.0 21.4 232 43-310 43-322 (1102)
52 PRK07178 pyruvate carboxylase 99.5 1.6E-12 3.4E-17 131.9 21.1 230 45-312 13-295 (472)
53 PRK05294 carB carbamoyl phosph 99.5 1.3E-12 2.9E-17 144.0 20.3 231 45-310 29-305 (1066)
54 PRK00885 phosphoribosylamine-- 99.5 3.8E-12 8.1E-17 127.1 21.4 102 99-215 85-200 (420)
55 TIGR01369 CPSaseII_lrg carbamo 99.5 1.9E-12 4.1E-17 142.5 20.2 233 44-310 27-303 (1050)
56 PRK06524 biotin carboxylase-li 99.5 1.8E-12 4E-17 130.6 17.8 191 91-311 118-325 (493)
57 PLN02257 phosphoribosylamine-- 99.5 7E-12 1.5E-16 125.9 21.9 236 47-332 52-317 (434)
58 TIGR01235 pyruv_carbox pyruvat 99.5 3.2E-12 6.9E-17 140.7 21.0 178 99-312 98-296 (1143)
59 PRK06111 acetyl-CoA carboxylas 99.5 6.4E-12 1.4E-16 126.2 20.9 180 99-312 98-296 (450)
60 PRK13789 phosphoribosylamine-- 99.4 9.6E-12 2.1E-16 124.7 18.4 236 44-331 55-321 (426)
61 PRK12815 carB carbamoyl phosph 99.4 1.5E-11 3.3E-16 135.6 20.4 234 44-314 28-306 (1068)
62 TIGR00877 purD phosphoribosyla 99.4 4.1E-11 9E-16 119.5 19.8 179 100-312 88-293 (423)
63 PRK12999 pyruvate carboxylase; 99.4 2.8E-11 6.2E-16 133.7 19.8 177 99-312 102-300 (1146)
64 PRK06395 phosphoribosylamine-- 99.4 6.8E-11 1.5E-15 118.9 20.2 238 45-331 53-319 (435)
65 PF02655 ATP-grasp_3: ATP-gras 99.3 4.6E-12 1E-16 110.6 9.0 152 113-310 1-159 (161)
66 TIGR02712 urea_carbox urea car 99.3 2.2E-10 4.8E-15 127.3 22.3 176 100-312 98-295 (1201)
67 PF15632 ATPgrasp_Ter: ATP-gra 99.3 4E-10 8.6E-15 109.1 19.2 184 75-310 67-282 (329)
68 COG0458 CarB Carbamoylphosphat 99.2 3.7E-10 8E-15 110.4 18.0 228 50-310 22-291 (400)
69 COG0439 AccC Biotin carboxylas 99.1 8.9E-10 1.9E-14 110.5 15.1 178 99-312 98-296 (449)
70 PF02786 CPSase_L_D2: Carbamoy 99.1 7.4E-10 1.6E-14 101.1 11.4 161 115-310 1-181 (211)
71 PF02750 Synapsin_C: Synapsin, 99.1 3.9E-09 8.4E-14 93.9 14.4 164 105-308 1-177 (203)
72 PRK05784 phosphoribosylamine-- 99.1 1.8E-08 3.9E-13 102.7 20.5 135 46-215 58-217 (486)
73 COG0027 PurT Formate-dependent 99.0 1.4E-08 3E-13 96.2 17.4 228 48-316 26-292 (394)
74 PF02955 GSH-S_ATP: Prokaryoti 99.0 4.1E-09 9E-14 93.3 10.7 135 136-308 11-161 (173)
75 COG1821 Predicted ATP-utilizin 98.9 6E-08 1.3E-12 89.5 15.4 149 106-310 105-257 (307)
76 PF14398 ATPgrasp_YheCD: YheC/ 98.9 4.7E-08 1E-12 92.1 15.1 189 95-317 3-241 (262)
77 COG0026 PurK Phosphoribosylami 98.8 3.7E-07 8.1E-12 88.7 19.9 225 49-312 16-270 (375)
78 PF02222 ATP-grasp: ATP-grasp 98.8 2.2E-08 4.8E-13 88.6 10.0 152 134-313 5-165 (172)
79 COG2232 Predicted ATP-dependen 98.8 4.8E-07 1E-11 86.4 17.8 220 44-309 19-274 (389)
80 PF14397 ATPgrasp_ST: Sugar-tr 98.8 1.6E-06 3.5E-11 82.7 20.9 196 105-314 16-265 (285)
81 KOG0238 3-Methylcrotonyl-CoA c 98.7 6.6E-07 1.4E-11 89.4 15.9 174 99-310 94-290 (670)
82 PRK13278 purP 5-formaminoimida 98.6 1.3E-06 2.7E-11 85.9 16.9 91 99-213 107-211 (358)
83 COG3919 Predicted ATP-grasp en 98.6 2.1E-07 4.6E-12 87.7 10.2 171 103-310 102-289 (415)
84 COG0151 PurD Phosphoribosylami 98.6 3.3E-06 7.1E-11 83.4 17.4 235 46-332 52-316 (428)
85 COG4770 Acetyl/propionyl-CoA c 98.5 2.5E-06 5.3E-11 86.5 16.0 175 99-310 98-294 (645)
86 PRK13277 5-formaminoimidazole- 98.5 2.8E-06 6E-11 83.1 15.2 162 114-308 125-318 (366)
87 KOG3895 Synaptic vesicle prote 98.5 1.4E-06 3E-11 83.6 11.8 218 75-329 156-390 (488)
88 COG1038 PycA Pyruvate carboxyl 98.4 6.3E-06 1.4E-10 86.3 16.1 171 99-307 104-297 (1149)
89 PF01071 GARS_A: Phosphoribosy 98.4 2E-06 4.4E-11 77.4 10.3 89 115-218 2-106 (194)
90 PF03133 TTL: Tubulin-tyrosine 98.3 1.5E-05 3.2E-10 75.8 14.6 97 113-213 19-125 (292)
91 KOG0369 Pyruvate carboxylase [ 98.2 4.3E-05 9.4E-10 78.8 15.0 226 26-309 76-325 (1176)
92 PF14305 ATPgrasp_TupA: TupA-l 97.4 0.018 4E-07 53.6 18.6 185 105-318 10-227 (239)
93 KOG0370 Multifunctional pyrimi 97.4 0.00064 1.4E-08 72.7 9.6 196 100-332 1017-1231(1435)
94 TIGR01016 sucCoAbeta succinyl- 97.0 0.0017 3.7E-08 64.5 7.4 89 117-216 6-116 (386)
95 PF14403 CP_ATPgrasp_2: Circul 96.8 0.0028 6.1E-08 63.9 7.2 150 44-204 200-386 (445)
96 PRK00696 sucC succinyl-CoA syn 96.8 0.0029 6.2E-08 62.9 7.1 91 115-216 4-116 (388)
97 KOG2156 Tubulin-tyrosine ligas 96.8 0.0065 1.4E-07 61.6 9.1 73 136-213 282-360 (662)
98 PF14243 DUF4343: Domain of un 95.7 0.4 8.8E-06 40.5 13.1 109 162-310 3-117 (130)
99 KOG0368 Acetyl-CoA carboxylase 95.5 0.19 4.1E-06 56.8 12.8 187 100-307 162-375 (2196)
100 PF13549 ATP-grasp_5: ATP-gras 94.4 0.025 5.3E-07 52.2 2.3 91 114-215 10-120 (222)
101 KOG0237 Glycinamide ribonucleo 94.3 1.4 3.1E-05 45.9 14.6 135 47-215 58-207 (788)
102 PF07065 D123: D123; InterPro 92.0 0.71 1.5E-05 44.5 8.3 92 193-313 150-243 (299)
103 KOG2157 Predicted tubulin-tyro 91.6 0.18 4E-06 51.7 3.9 56 158-216 197-270 (497)
104 PF08442 ATP-grasp_2: ATP-gras 90.2 0.84 1.8E-05 41.5 6.4 80 119-208 7-108 (202)
105 PHA02117 glutathionylspermidin 88.8 11 0.00024 37.8 13.7 166 44-225 191-380 (397)
106 PRK14046 malate--CoA ligase su 88.5 1.5 3.2E-05 43.8 7.4 87 118-215 7-115 (392)
107 PF02951 GSH-S_N: Prokaryotic 87.1 1.6 3.4E-05 36.4 5.5 80 31-111 2-119 (119)
108 COG0045 SucC Succinyl-CoA synt 82.2 4.5 9.8E-05 40.2 7.1 84 118-211 7-109 (387)
109 COG1759 5-formaminoimidazole-4 80.0 2.6 5.7E-05 40.9 4.5 66 115-202 124-203 (361)
110 KOG2158 Tubulin-tyrosine ligas 69.1 2.2 4.8E-05 43.3 1.1 52 160-215 226-284 (565)
111 PF02729 OTCace_N: Aspartate/o 67.8 16 0.00035 31.1 6.0 77 25-107 35-123 (142)
112 PLN02235 ATP citrate (pro-S)-l 64.5 21 0.00046 36.1 7.0 71 133-204 23-114 (423)
113 KOG0370 Multifunctional pyrimi 60.5 3.1 6.8E-05 45.7 0.3 232 43-310 397-672 (1435)
114 PLN00124 succinyl-CoA ligase [ 59.1 9.8 0.00021 38.5 3.6 44 117-170 33-79 (422)
115 PRK12562 ornithine carbamoyltr 49.6 48 0.001 32.5 6.5 74 27-107 43-129 (334)
116 PF04174 CP_ATPgrasp_1: A circ 48.0 19 0.0004 35.3 3.4 27 282-310 67-93 (330)
117 COG0754 Gsp Glutathionylspermi 46.7 11 0.00023 37.3 1.5 171 29-218 170-357 (387)
118 PF02310 B12-binding: B12 bind 45.2 77 0.0017 25.2 6.2 33 35-67 6-38 (121)
119 PRK03515 ornithine carbamoyltr 41.6 51 0.0011 32.4 5.3 73 27-106 43-128 (336)
120 PRK02102 ornithine carbamoyltr 41.4 45 0.00097 32.7 4.9 73 27-106 44-129 (331)
121 PF08532 Glyco_hydro_42M: Beta 41.0 41 0.00089 30.2 4.3 67 48-118 34-103 (207)
122 PRK00779 ornithine carbamoyltr 40.3 52 0.0011 31.7 5.1 74 27-107 41-127 (304)
123 PRK14805 ornithine carbamoyltr 39.1 54 0.0012 31.6 5.0 75 27-108 36-123 (302)
124 TIGR00658 orni_carb_tr ornithi 38.9 58 0.0012 31.4 5.2 73 27-106 37-122 (304)
125 PRK04284 ornithine carbamoyltr 38.8 60 0.0013 31.7 5.4 73 27-106 43-128 (332)
126 KOG2157 Predicted tubulin-tyro 38.5 37 0.00079 35.2 3.9 34 283-318 377-410 (497)
127 TIGR02307 RNA_lig_RNL2 RNA lig 37.9 1.9E+02 0.0042 28.3 8.6 32 192-225 24-56 (325)
128 TIGR00670 asp_carb_tr aspartat 37.6 61 0.0013 31.2 5.2 88 27-121 37-143 (301)
129 PRK01713 ornithine carbamoyltr 37.5 65 0.0014 31.5 5.4 74 27-107 44-130 (334)
130 COG1181 DdlA D-alanine-D-alani 34.4 4.8 0.0001 39.1 -3.0 107 99-220 35-155 (317)
131 PRK10507 bifunctional glutathi 32.8 1.1E+02 0.0024 32.6 6.5 156 49-224 399-600 (619)
132 PLN02342 ornithine carbamoyltr 31.6 84 0.0018 31.0 5.1 73 27-106 83-168 (348)
133 PF13380 CoA_binding_2: CoA bi 31.1 2.9E+02 0.0062 22.4 7.7 67 40-107 11-88 (116)
134 PRK02255 putrescine carbamoylt 30.5 98 0.0021 30.4 5.3 74 27-107 40-126 (338)
135 TIGR00853 pts-lac PTS system, 30.5 60 0.0013 25.6 3.2 63 43-108 17-85 (95)
136 PF04556 DpnII: DpnII restrict 29.9 75 0.0016 30.5 4.2 36 275-312 179-220 (286)
137 KOG2983 Uncharacterized conser 29.2 1.8E+02 0.0039 27.8 6.5 85 195-312 165-255 (334)
138 COG0078 ArgF Ornithine carbamo 28.9 96 0.0021 30.1 4.8 73 28-107 43-128 (310)
139 PRK00856 pyrB aspartate carbam 28.6 1.1E+02 0.0024 29.5 5.3 75 27-108 43-131 (305)
140 PF12058 DUF3539: Protein of u 28.6 34 0.00073 26.9 1.4 19 198-216 3-23 (88)
141 TIGR02049 gshA_ferroox glutama 26.5 2.1E+02 0.0045 28.7 6.7 58 163-223 260-340 (403)
142 PRK11303 DNA-binding transcrip 26.4 2.4E+02 0.0051 26.3 7.1 61 5-66 35-100 (328)
143 cd03143 A4_beta-galactosidase_ 25.3 1.9E+02 0.0042 24.1 5.7 56 47-106 29-87 (154)
144 PF01725 Ham1p_like: Ham1 fami 25.1 71 0.0015 28.5 3.0 57 268-332 47-108 (189)
145 cd02065 B12-binding_like B12 b 24.9 1.8E+02 0.0039 23.0 5.3 22 46-67 16-37 (125)
146 PLN02527 aspartate carbamoyltr 24.3 1.3E+02 0.0029 29.0 5.0 88 27-121 37-144 (306)
147 COG0540 PyrB Aspartate carbamo 24.2 1.3E+02 0.0029 29.2 4.9 70 29-105 46-130 (316)
148 PF08886 GshA: Glutamate-cyste 24.2 2.1E+02 0.0045 28.8 6.3 58 163-223 263-343 (404)
149 PF12122 DUF3582: Protein of u 23.8 1.5E+02 0.0032 23.9 4.4 47 47-99 14-61 (101)
150 PRK14804 ornithine carbamoyltr 22.0 1.8E+02 0.0039 28.1 5.4 76 27-109 41-128 (311)
151 TIGR02417 fruct_sucro_rep D-fr 21.8 3.9E+02 0.0085 24.8 7.7 61 6-66 35-99 (327)
152 cd06353 PBP1_BmpA_Med_like Per 21.6 3E+02 0.0065 25.4 6.7 35 32-66 2-40 (258)
153 cd03770 SR_TndX_transposase Se 21.5 4.3E+02 0.0094 21.9 7.1 33 31-63 1-41 (140)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=4.3e-88 Score=641.09 Aligned_cols=303 Identities=55% Similarity=0.949 Sum_probs=251.1
Q ss_pred CCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019600 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (338)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi 104 (338)
..+++++|||||++||+++|+|++|+.+|+++||+|++||+++||++|||||+||||+|++.|++.+++|.++||+++||
T Consensus 3 ~~~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~vi 82 (307)
T PF05770_consen 3 TQRKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVI 82 (307)
T ss_dssp GGGTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEE
T ss_pred ccccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeC
Q 019600 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (338)
Q Consensus 105 Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (338)
||+++|++++||..|+++|.++......++|++|+++++.++.+++.+.+.+++|+||+||||++||||+.||.|+|||+
T Consensus 83 Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~ 162 (307)
T PF05770_consen 83 DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFN 162 (307)
T ss_dssp T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-S
T ss_pred cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEEC
Confidence 99999999999999999999887666677999999999976666788888899999999999999999999999999999
Q ss_pred hhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCC--cccc
Q 019600 185 QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD--PCVA 262 (338)
Q Consensus 185 ~~~L~~l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~--~~~~ 262 (338)
+++|+++++|||+||||||+|++||||||||+++++.|+|+||++.++.....++|+|+++|+.++.+..+.++ +...
T Consensus 163 ~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~ 242 (307)
T PF05770_consen 163 EEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQV 242 (307)
T ss_dssp GGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTT
T ss_pred HHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccc
Confidence 99999999999999999999999999999999999999999999888766667889999999988777665555 4556
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccchHHHHHHHHH
Q 019600 263 ELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLS 327 (338)
Q Consensus 263 ~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~ 327 (338)
++|+.+.++++|..+|++|||+|||||+|++++|+++||||||||||||+|+|+|+.+|+++|++
T Consensus 243 ~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 243 EMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLTDFILD 307 (307)
T ss_dssp TS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHHHHhhC
Confidence 78888999999999999999999999999999995589999999999999999999999999975
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=1e-80 Score=597.44 Aligned_cols=314 Identities=74% Similarity=1.153 Sum_probs=284.7
Q ss_pred CCcccCCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCC
Q 019600 20 FPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHP 99 (338)
Q Consensus 20 ~~~~~~~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p 99 (338)
+.+++...++++|||||++||++||.|++|+++|+++||++++||+++||.+|||||+||||++++.|++.+++|..+||
T Consensus 12 ~~~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~p 91 (328)
T PLN02941 12 PLSSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHP 91 (328)
T ss_pred cccccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCC
Confidence 33345788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceee
Q 019600 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (338)
Q Consensus 100 ~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m 179 (338)
|++||||+++|++|+||+.|+++|+++++..+..+|++|+|+++.+...++......++++||+|+||+.||||++||+|
T Consensus 92 gv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m 171 (328)
T PLN02941 92 DVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKM 171 (328)
T ss_pred CcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccce
Confidence 99999999999999999999999999988777778999999999644333333356789999999999999999999999
Q ss_pred EEEeChhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCC---
Q 019600 180 SLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD--- 256 (338)
Q Consensus 180 ~iv~~~~~L~~l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~--- 256 (338)
++|+++++|..++.|+|+||||||+|+|||||||||++.++.|+|+|||..++..+..|.++|+++++.++.+....
T Consensus 172 ~lv~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~ 251 (328)
T PLN02941 172 SLAYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGG 251 (328)
T ss_pred EEecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999899999999998654444567899999998776665554
Q ss_pred CCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccchHHHHHHHHHHHHhhc
Q 019600 257 LDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRY 333 (338)
Q Consensus 257 ~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~~i~~~~ 333 (338)
++|...++|+++++++||.+++++||++|||||+|++.++|++|+||||||||||+|+|+|+..|+|+|++++++++
T Consensus 252 ~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~~~~~~~ 328 (328)
T PLN02941 252 LDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLVQKKY 328 (328)
T ss_pred cccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHHHHhcCC
Confidence 55556678888899999999999999999999999997666689999999999999999999999999999999874
No 3
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.96 E-value=4.1e-28 Score=231.58 Aligned_cols=251 Identities=17% Similarity=0.256 Sum_probs=177.4
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCC---CC-----------cCCCccEEEEccCch--hHHHHHHHHHHhCCCceeeChH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRP---LS-----------DQGPFDIVLHKLTGK--EWRQILEEYRQTHPEVTVLDPP 107 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~---l~-----------~qg~~DvilhK~~~~--~~~~~l~~~~~~~p~v~ViDp~ 107 (338)
.+...|.++++++|++++.+|+.+. +. ...++|+++.+..+. .......+..+. .|+.|+|++
T Consensus 13 ~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~-~g~~v~n~~ 91 (300)
T PRK10446 13 YSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEM-LGSYPLNES 91 (300)
T ss_pred hhHHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHH-CCCceecCH
Confidence 4446699999999999999998863 11 123789999987652 111122222222 468999999
Q ss_pred HHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhh
Q 019600 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (338)
Q Consensus 108 ~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~ 187 (338)
.++..+.||..+.+.|+++ +||+|++.++. +.+.+.+.+ ..-.+||+|+||..+ + +|.++.++.+.++
T Consensus 92 ~a~~~~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~-~~~~~~P~VvKP~~g--~-~g~GV~~v~~~~~ 159 (300)
T PRK10446 92 VAIARARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLI-DMVGGAPLVVKLVEG--T-QGIGVVLAETRQA 159 (300)
T ss_pred HHHHhhhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHH-HHhCCCCEEEEECCC--C-CcccEEEEcCHHH
Confidence 9999999999999999975 89999998874 222222222 222379999999984 3 5889999999877
Q ss_pred Hhc-------cCCCeEEEecccC-CCcEEEEEEECCEEEEEEEe-cC-CCCCcccccCCCceeeecCcccccccCCCCCC
Q 019600 188 LKK-------LEPPLVLQEFVNH-GGVLFKVYIVGEAIKVVRRF-SL-PDVTKQDLSTSAGVFRFPRVSCAAASADDADL 257 (338)
Q Consensus 188 L~~-------l~~p~vvQeFI~h-~g~~~KV~VIGd~v~~~~R~-Sl-p~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~ 257 (338)
+.. ++.++++||||++ .|++++|+|+|+++..+.++ +. .+|.++ + ..++ .....
T Consensus 160 ~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~~~~~~n----------~---~~g~-~~~~~-- 223 (300)
T PRK10446 160 AESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSN----------L---HRGG-AASVA-- 223 (300)
T ss_pred HHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCCCchhhe----------e---ccCC-eeccC--
Confidence 653 3678999999987 59999999999998766444 32 123211 1 1111 11111
Q ss_pred CccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccc-----hHHHHHHHHHHHHhh
Q 019600 258 DPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY-----EHIFTDFLLSLTQSR 332 (338)
Q Consensus 258 ~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~-----~~~l~~~l~~~i~~~ 332 (338)
++ .+.++++|.++.++||+.++|||++.++ +| +||+|||..|||+++... .+.+.+++.+.+..+
T Consensus 224 -----~l--~~~~~~~a~~a~~alg~~~~gvD~~~~~-~g--~~vlEvN~~pg~~~~~~~~g~~~~~~~~~~i~~~~~~~ 293 (300)
T PRK10446 224 -----SI--TPQEREIAIKAARTMALDVAGVDILRAN-RG--PLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTE 293 (300)
T ss_pred -----CC--CHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC--cEEEEEECCCChhhhHHHHCcCHHHHHHHHHHHhcccc
Confidence 12 3557999999999999999999999874 34 789999999999887654 345555555555544
Q ss_pred c
Q 019600 333 Y 333 (338)
Q Consensus 333 ~ 333 (338)
+
T Consensus 294 ~ 294 (300)
T PRK10446 294 Y 294 (300)
T ss_pred c
Confidence 4
No 4
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-28 Score=236.14 Aligned_cols=233 Identities=22% Similarity=0.305 Sum_probs=161.1
Q ss_pred cceEEEEeeCCCCCCcCCCccEEEEccCchhHH--HHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCC
Q 019600 56 KGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR--QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYG 133 (338)
Q Consensus 56 ~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~--~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~ 133 (338)
.+..+..+.... .....++|+++.|.++.... ..++. .++-|++||||+++|..|.||+.+++.|+..
T Consensus 61 ~~~~~~~~~~~~-~~~~~~~D~i~~R~~~~~~~~~~~~~~--~E~~G~~viN~p~~i~~~~nK~~~~~~l~~~------- 130 (318)
T COG0189 61 IGLHYELIEEED-LSLLDELDVIIMRKDPPFDFATRFLRL--AERKGVPVINDPQSIRRCRNKLYTTQLLAKA------- 130 (318)
T ss_pred cccccccccccc-cchhccCCEEEEecCCchhhHHHHHHH--HHHcCCeEECCHHHHHhhhhHHHHHHHHHhc-------
Confidence 344444443332 22334899999999874222 22222 2445999999999999999999999999964
Q ss_pred CccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChh-hHhcc--------CCCeEEEecccCC
Q 019600 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-SLKKL--------EPPLVLQEFVNHG 204 (338)
Q Consensus 134 ~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~-~L~~l--------~~p~vvQeFI~h~ 204 (338)
++|+|+|+++.+. .+... .....++||+|+||+. || ++.++.++.+.+ +|.++ ..++++||||+..
T Consensus 131 ~ipvP~T~i~~~~-~~~~~-~~~~~~g~pvVlKp~~--Gs-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~ 205 (318)
T COG0189 131 GIPVPPTLITRDP-DEAAE-FVAEHLGFPVVLKPLD--GS-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA 205 (318)
T ss_pred CCCCCCEEEEcCH-HHHHH-HHHHhcCCCEEEeeCC--CC-CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcc
Confidence 8999999999632 22332 3456789999999998 55 899999999998 76653 2369999999998
Q ss_pred CcEEEEEEECCEEEEEE---Ee--cCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHH
Q 019600 205 GVLFKVYIVGEAIKVVR---RF--SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR 279 (338)
Q Consensus 205 g~~~KV~VIGd~v~~~~---R~--Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~ 279 (338)
++++|.+++||.+.++. ++ +..+| ++| . +.++ .+.+.. + .+++++||.++++
T Consensus 206 ~~~~rrivv~~~~~~~~y~~~R~~~~~~~-----R~N-----~---a~Gg-~~e~~~-------l--~~e~~elA~kaa~ 262 (318)
T COG0189 206 KRDDRRVLVGGGEVVAIYALARIPASGDF-----RSN-----L---ARGG-RAEPCE-------L--TEEEEELAVKAAP 262 (318)
T ss_pred cCCcEEEEEeCCEEeEEeeeccccCCCCc-----eee-----c---cccc-cccccC-------C--CHHHHHHHHHHHH
Confidence 87777777766655443 33 22233 322 1 2111 222222 2 3567999999999
Q ss_pred HhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCC-c---ccc--hHHHHHHHHHHH
Q 019600 280 QLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGK-M---PEY--EHIFTDFLLSLT 329 (338)
Q Consensus 280 ~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~g-v---~~~--~~~l~~~l~~~i 329 (338)
+||+.++||||++++ +++||+|||.+|++++ + +++ ...+.+++...+
T Consensus 263 ~lGl~~~GVDiie~~---~g~~V~EVN~sP~~~~~i~~~~g~~~~~~~~~~ie~~~ 315 (318)
T COG0189 263 ALGLGLVGVDIIEDK---DGLYVTEVNVSPTGKGEIERVTGVNIAGLIIDAIEKFV 315 (318)
T ss_pred HhCCeEEEEEEEecC---CCcEEEEEeCCCccccchhhhcCCchHHHHHHHHHHHH
Confidence 999999999999874 3489999999998886 2 333 244445444444
No 5
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.96 E-value=1.7e-27 Score=223.88 Aligned_cols=244 Identities=18% Similarity=0.251 Sum_probs=176.5
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCC-------cCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHH
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPLS-------DQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQS 118 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l~-------~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~ 118 (338)
.+.|+++++++|+++..+|+.+... +..++|+++.|.........+ .+..+.-|++++||+++++.+.||..
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~-~~~le~~g~~~~n~~~~~~~~~dK~~ 90 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYS-ARLLEALGVPVINSSHVIEACGDKIF 90 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHH-HHHHHHCCCcEECcHHHHHHHhhHHH
Confidence 4568999999999999987775322 224689999985432111122 22223358999999999999999999
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------
Q 019600 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------- 191 (338)
Q Consensus 119 ~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------- 191 (338)
+++.|+++ +||+|++..+. +.+++.+. ...++||+|+||..+ + +++++.++.+.+++.++
T Consensus 91 ~~~~l~~~-------gip~P~t~~~~-~~~~~~~~--~~~~~~P~vvKP~~g--~-~g~gv~~v~~~~~l~~~~~~~~~~ 157 (280)
T TIGR02144 91 TYLKLAKA-------GVPTPRTYLAF-DREAALKL--AEALGYPVVLKPVIG--S-WGRLVALIRDKDELESLLEHKEVL 157 (280)
T ss_pred HHHHHHHC-------CcCCCCeEeeC-CHHHHHHH--HHHcCCCEEEEECcC--C-CcCCEEEECCHHHHHHHHHHHHhh
Confidence 99999865 89999998874 22222222 235799999999884 3 57889999999876541
Q ss_pred ----CCCeEEEecccCCCcEEEEEEECCEEEEE-EEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCC
Q 019600 192 ----EPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP 266 (338)
Q Consensus 192 ----~~p~vvQeFI~h~g~~~KV~VIGd~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~ 266 (338)
+.++++||||++.|++++++|+|+++.+. .|.+ .+++.+. +..+ ...+. +.
T Consensus 158 ~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~~~-------------~~g~-~~~~~---------~~ 213 (280)
T TIGR02144 158 GGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRTNT-------------ARGG-KAEPC---------PL 213 (280)
T ss_pred cCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhhhh-------------hcCC-ceecc---------CC
Confidence 25799999999879999999999997754 5544 3333221 1011 01111 11
Q ss_pred hHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcc-----cchHHHHHHHHHHH
Q 019600 267 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP-----EYEHIFTDFLLSLT 329 (338)
Q Consensus 267 ~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~-----~~~~~l~~~l~~~i 329 (338)
.+.++++|.++.+++|+.++|||++.+++ | .++|+|||..|||.++. ++...+.+++.+++
T Consensus 214 ~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 279 (280)
T TIGR02144 214 DEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFKNSVRVTGVNVAGEILEYAVSLV 279 (280)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchhhhhHhhCCCHHHHHHHHHHHhh
Confidence 35579999999999999999999998753 4 58999999999999864 44567777777665
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.95 E-value=3.1e-26 Score=214.00 Aligned_cols=233 Identities=18% Similarity=0.270 Sum_probs=170.2
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc-------CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSD-------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQ 117 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~-------qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~ 117 (338)
+.+.|+++++++|+++..+|+...... ...+|+|+.|.........+.+..+. -|++++|+++++..+.||.
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeeeCCHHHHHHHhhHH
Confidence 777899999999999999988653211 34689999998432222233333333 4789999999999999999
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc------
Q 019600 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------ 191 (338)
Q Consensus 118 ~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------ 191 (338)
.+++.|+++ +|++|++..+. +.+++.+.+ ..++||+|+||..++ +|.++.++.+.+++..+
T Consensus 91 ~~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~~--~~~~~p~vvKP~~g~---~g~gv~~i~~~~~l~~~~~~~~~ 157 (277)
T TIGR00768 91 LTSQLLAKA-------GLPQPRTGLAG-SPEEALKLI--EEIGFPVVLKPVFGS---WGRLVSLARDKQAAETLLEHFEQ 157 (277)
T ss_pred HHHHHHHHC-------CCCCCCEEEeC-CHHHHHHHH--HhcCCCEEEEECcCC---CCCceEEEcCHHHHHHHHHHHHH
Confidence 999999975 89999998885 222233322 357899999999854 46789999999887542
Q ss_pred -C---CCeEEEecccCC-CcEEEEEEECCEEEEEEEec-CCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCC
Q 019600 192 -E---PPLVLQEFVNHG-GVLFKVYIVGEAIKVVRRFS-LPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELP 265 (338)
Q Consensus 192 -~---~p~vvQeFI~h~-g~~~KV~VIGd~v~~~~R~S-lp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p 265 (338)
. .++++||||++. |.+++|+|+|+++..+.++. ..+|.++ .+.++. .... .+
T Consensus 158 ~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~~~~~~n-------------~~~g~~-~~~~-------~l- 215 (277)
T TIGR00768 158 LNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITSGHWRTN-------------LARGGK-AEPC-------PL- 215 (277)
T ss_pred hcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCCCchhhh-------------hhcCCe-eeec-------CC-
Confidence 2 379999999976 48999999999988664443 2222211 111110 0111 11
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCccc
Q 019600 266 PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 316 (338)
Q Consensus 266 ~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 316 (338)
.++++++|.++.++||+.++|||++++. +| +++|+|||..||+.++..
T Consensus 216 -~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~~~~~ 263 (277)
T TIGR00768 216 -TEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFKNSVK 263 (277)
T ss_pred -CHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchhhhHH
Confidence 2567999999999999999999999986 44 699999999999987653
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.93 E-value=1.9e-25 Score=200.03 Aligned_cols=169 Identities=28% Similarity=0.473 Sum_probs=98.5
Q ss_pred ccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc--
Q 019600 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (338)
Q Consensus 114 ~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-- 191 (338)
.||..++++|+++ +||+|+|.++. +.+++.+.+...+ +||+|+||+.+ + .+.+|.++.+.+++..+
T Consensus 2 ~dK~~~~~~l~~~-------gipvP~t~~~~-~~~~~~~~~~~~~-~~p~ViKp~~g--~-~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 2 EDKLLTLQLLAKA-------GIPVPETRVTN-SPEEAKEFIEELG-GFPVVIKPLRG--S-SGRGVFLINSPDELESLLD 69 (190)
T ss_dssp HBHHHHHHHHHHT-------T-----EEEES-SHHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH
T ss_pred CCHHHHHHHHHHC-------CcCCCCEEEEC-CHHHHHHHHHHhc-CCCEEEeeCCC--C-CCCEEEEecCHHHHHHHHH
Confidence 5999999999975 89999999995 3334444444444 89999999884 3 68899999999877653
Q ss_pred -----CCCeEEEecccCCC-cEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCC
Q 019600 192 -----EPPLVLQEFVNHGG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELP 265 (338)
Q Consensus 192 -----~~p~vvQeFI~h~g-~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p 265 (338)
+.++++|+||++.+ +|+||+|||++++.+++++.++ ++|+++ .+.++ ..++ .++
T Consensus 70 ~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n--------~~~g~------~~~~--~~l- 129 (190)
T PF08443_consen 70 AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTN--------LSRGG------KVEP--YDL- 129 (190)
T ss_dssp -----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------EE------
T ss_pred HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchhh--------hccCc------eEEE--ecC-
Confidence 67999999999865 9999999999999876665432 133322 11111 1111 122
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccch
Q 019600 266 PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 318 (338)
Q Consensus 266 ~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~ 318 (338)
.+++.++|.++.++||++++|||++..+ + ++||+|||.+|||++++...
T Consensus 130 -~~e~~~~a~~~~~~lgl~~~giDi~~~~--~-~~~v~EvN~~~~~~~~~~~~ 178 (190)
T PF08443_consen 130 -PEEIKELALKAARALGLDFAGIDILDTN--D-GPYVLEVNPNPGFRGIEEAT 178 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET--T-EEEEEEEETT---TTHHHHH
T ss_pred -CHHHHHHHHHHHHHhCCCEEEEEEEecC--C-CeEEEEecCCchHhHHHHHH
Confidence 2567999999999999999999977653 3 59999999999999987653
No 8
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.91 E-value=2.8e-22 Score=190.92 Aligned_cols=237 Identities=18% Similarity=0.224 Sum_probs=168.4
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc---CCCccEEEEccCchhH-HHHHHHHHHhCCCceeeCh-HHHHHHhccHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSM 119 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~---qg~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ViDp-~~ai~~l~dR~~~ 119 (338)
+-..+.++++++|++++.|+.+..+.+ ...+|+|+....+... ...++.+.+. -|++++.+ +.++..+.||..+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~ 102 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLEL-LGIPYTGSGVLASALAMDKLRT 102 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHhCHHHH
Confidence 346688999999999999998876654 4578999998644211 1234555544 48999977 7999999999999
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cC
Q 019600 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LE 192 (338)
Q Consensus 120 ~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~ 192 (338)
.++|.++ +|++|++..+.+. ++... ....++||+|+||..++ +|.++.++.+.+++.+ ..
T Consensus 103 k~~l~~~-------gIp~p~~~~~~~~-~~~~~--~~~~~~~P~ivKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~ 169 (304)
T PRK01372 103 KLVWQAA-------GLPTPPWIVLTRE-EDLLA--AIDKLGLPLVVKPAREG---SSVGVSKVKEEDELQAALELAFKYD 169 (304)
T ss_pred HHHHHHC-------CCCCCCEEEEeCc-chHHH--HHhhcCCCEEEeeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcC
Confidence 9999875 8999999998632 22222 23468999999999954 4678999999988764 25
Q ss_pred CCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccC--CCCCCCccccCCCChHHH
Q 019600 193 PPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLL 270 (338)
Q Consensus 193 ~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~--~~~~~~~~~~~~p~~~~~ 270 (338)
.++++||||+ |++|.|.|+|+++....+...+ .+.+++......+... .+..+++. ..+.+
T Consensus 170 ~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~p~~~~~~-----~~~~l 232 (304)
T PRK01372 170 DEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA----------GEFYDYEAKYLAGGTQYICPAGLPAE-----IEAEL 232 (304)
T ss_pred CcEEEEcccC--CEEEEEEEECCCccceEEEEec----------CCEEeeeccccCCCeEEEeCCCCCHH-----HHHHH
Confidence 7899999996 9999999999976644333211 1122322211111000 01111111 13467
Q ss_pred HHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 271 ERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 271 ~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
+++|.++.++||+. +++||+++++ +| ++||+|||..||+.+-
T Consensus 233 ~~~a~~~~~~lg~~g~~~iD~~~~~-~g-~~~viEvN~~p~~~~~ 275 (304)
T PRK01372 233 QELALKAYRALGCRGWGRVDFMLDE-DG-KPYLLEVNTQPGMTSH 275 (304)
T ss_pred HHHHHHHHHHhCCcceEEEEEEEcC-CC-CEEEEEecCCCCCCcc
Confidence 89999999999995 6679999986 35 6999999999999864
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.90 E-value=2.3e-22 Score=193.35 Aligned_cols=252 Identities=14% Similarity=0.175 Sum_probs=166.6
Q ss_pred EEEEEecc---cccccccchHHHhhhhhcceEEEEeeCCCCCCc------------------------------CCCccE
Q 019600 31 VVGYALTS---KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------------QGPFDI 77 (338)
Q Consensus 31 ~VGy~l~~---kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~------------------------------qg~~Dv 77 (338)
.||+.|-| -|.++.+..+|..+|.++|+++..+++++.... ...||+
T Consensus 2 ~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ 81 (312)
T TIGR01380 2 KVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDA 81 (312)
T ss_pred eEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCE
Confidence 46666653 455666778899999999999999888762210 136899
Q ss_pred EEEccCch---hH--HHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhH
Q 019600 78 VLHKLTGK---EW--RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD 152 (338)
Q Consensus 78 ilhK~~~~---~~--~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~ 152 (338)
+|.|.... .. ...+.++.+. -|++|+||+++++.+.||..+++++ .++|+|.+.. +.+.+.+
T Consensus 82 v~~R~~~~~~~~~~~~~~~l~~le~-~g~~viN~p~~i~~~~dK~~~~~~~-----------~~vP~T~v~~-~~~~~~~ 148 (312)
T TIGR01380 82 VLMRKDPPFDMEYIYATYLLELADP-TGTLVINSPQGLRDANEKLFTLQFP-----------KVIPPTLVTR-DKAEIRA 148 (312)
T ss_pred EEEeCCCCCChhhhHHHHHHHHHHh-CCCeEEeCHHHHHhhhhHHHHhhCc-----------CCCCCEEEeC-CHHHHHH
Confidence 99997432 11 1122333322 4899999999999999999977653 2699998764 3333444
Q ss_pred HHHhcCCCCcEEEeeCCCCCCCcceeeEEEeCh-hhH-------hcc-CCCeEEEecccC-CCcEEEEEEECCEEEE-EE
Q 019600 153 VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSL-------KKL-EPPLVLQEFVNH-GGVLFKVYIVGEAIKV-VR 221 (338)
Q Consensus 153 ~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~-~~L-------~~l-~~p~vvQeFI~h-~g~~~KV~VIGd~v~~-~~ 221 (338)
.+.. .+ |+|+||+.| + +++++..+... ..+ ..+ ..|+++|+||+. .+.|+||+|||++++. +.
T Consensus 149 ~~~~--~g-~vVvKPl~G--~-~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai 222 (312)
T TIGR01380 149 FLAE--HG-DIVLKPLDG--M-GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAV 222 (312)
T ss_pred HHHH--cC-CEEEEECCC--C-CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEE
Confidence 3333 34 999999994 4 67888887652 222 222 469999999986 4689999999999875 55
Q ss_pred Ee-cCC-CCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEeCCC
Q 019600 222 RF-SLP-DVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQLGLRLFNLDIIREHGT 296 (338)
Q Consensus 222 R~-Slp-~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~LGl~l~GvDvi~~~~~ 296 (338)
|+ +.+ +|++|. ..++ ..... ++ .++..++|.++. +++|+.+.|||+|
T Consensus 223 ~R~~~~gd~r~N~-------------~~Gg-~~~~~-------~l--~~e~~~ia~~~~~~~~~~gl~~agVDii----- 274 (312)
T TIGR01380 223 ARIPAGGEFRGNL-------------AVGG-RGEAT-------EL--SERDREICADVAPELKRRGLLFVGIDVI----- 274 (312)
T ss_pred EecCCCCCccccc-------------cCCc-eeecc-------CC--CHHHHHHHHHHHHHHHhcCCcEEEEEEe-----
Confidence 44 433 344331 1111 11111 22 244588999987 6779999999999
Q ss_pred CCeEEEEeccCC--CCCCCcccch-HHHHHHHHHHHHh
Q 019600 297 RDQFYVIDINYF--PGYGKMPEYE-HIFTDFLLSLTQS 331 (338)
Q Consensus 297 g~~~~ViDVN~f--Pg~~gv~~~~-~~l~~~l~~~i~~ 331 (338)
| ++|+|||.. +||.++.... .-+.+.+.+.+.+
T Consensus 275 g--~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l~~ 310 (312)
T TIGR01380 275 G--GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAIEK 310 (312)
T ss_pred C--CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHHHh
Confidence 3 369999975 5998876542 2344455555443
No 10
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.90 E-value=9e-22 Score=188.20 Aligned_cols=241 Identities=17% Similarity=0.233 Sum_probs=162.4
Q ss_pred cchHHHhhhhhcceEEEEeeCCCC-------CC--------cCCCccEEEEccCchhH-HHHHHHHHHhCCCceeeCh-H
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRP-------LS--------DQGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-P 107 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~-------l~--------~qg~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ViDp-~ 107 (338)
+-..++++++++|++++.|+.+.. +. ....+|+|+.-+.+... ...++...+ .-|++++++ +
T Consensus 19 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le-~~gip~~g~~~ 97 (315)
T TIGR01205 19 SAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLE-LMGIPYTGSGV 97 (315)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHH-HcCCCccCCCH
Confidence 334478899999999999998862 11 12578999986533211 023344333 358999986 8
Q ss_pred HHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHH---HHhcCCCCcEEEeeCCCCCCCcceeeEEEeC
Q 019600 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV---VLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (338)
Q Consensus 108 ~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~---l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (338)
.++..+.||..+.+.|+++ +|++|++..+..+..+..+. .....++||+|+||..++ +|.++.++.|
T Consensus 98 ~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~---~s~Gv~~v~~ 167 (315)
T TIGR01205 98 LASALSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREG---SSVGVSKVKS 167 (315)
T ss_pred HHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCC---CccCEEEECC
Confidence 9999999999999999975 89999999886222211110 112468999999998854 4678999999
Q ss_pred hhhHhcc-------CCCeEEEecccCCCcEEEEEEEC-CEEEEE-EEecCCCCCcccccCCCceeeecCcccccc--cCC
Q 019600 185 QYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVG-EAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAA--SAD 253 (338)
Q Consensus 185 ~~~L~~l-------~~p~vvQeFI~h~g~~~KV~VIG-d~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~--~~~ 253 (338)
.++|.+. ..++++||||+ |++|.|.|+| ++.... .+.... ..+++|......+. ...
T Consensus 168 ~~el~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 235 (315)
T TIGR01205 168 EEELQAALDEAFEYDEEVLVEQFIK--GRELEVSILGNEEALPIIEIVPEI----------EGFYDYEAKYLDGSTEYVI 235 (315)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECCCCccceEEecCCC----------CCeeCcccccCCCCeeEEe
Confidence 9888643 67899999994 9999999999 443222 211100 00222221111110 001
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCCCCCcc
Q 019600 254 DADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 315 (338)
+..+++.. .+.++++|.++.++||+ ++++||++++. +| +++|+|||..||+....
T Consensus 236 p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 236 PAPLDEEL-----EEKIKELALKAYKALGCRGLARVDFFLDE-EG-EIYLNEINTIPGMTAIS 291 (315)
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCCcc
Confidence 11222111 34689999999999999 68899999985 34 69999999999998643
No 11
>PRK12458 glutathione synthetase; Provisional
Probab=99.90 E-value=8e-22 Score=191.63 Aligned_cols=247 Identities=16% Similarity=0.196 Sum_probs=166.0
Q ss_pred ccccchHHHhhhhhcceEEEEeeCCCCCCc--------------------------------------CCCccEEEEccC
Q 019600 42 KSFLQPKLEGLARNKGILFVAIDQNRPLSD--------------------------------------QGPFDIVLHKLT 83 (338)
Q Consensus 42 ~~~~~~~l~~~~~~~gi~~~~id~~~~l~~--------------------------------------qg~~DvilhK~~ 83 (338)
.+.+..+|..+|.++|+++..+++.+.... ...||+|++|..
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~ 88 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFLSFLKKAEFKKERLPLAGFDVIFLRAN 88 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchhhHhhccccccccCchhhCCEEEEeCC
Confidence 567777899999999999987776653211 125899999965
Q ss_pred ch---hHHHHHHHH------HHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHH
Q 019600 84 GK---EWRQILEEY------RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV 154 (338)
Q Consensus 84 ~~---~~~~~l~~~------~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l 154 (338)
.. ...+++..+ ..+..|++++|++++++.+.||..+++ |. .+++|+|++.. +.+.+.+.+
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~-l~---------~~~vP~T~v~~-~~~~~~~~~ 157 (338)
T PRK12458 89 PPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQS-FP---------EEVRPTTHISR-NKEYIREFL 157 (338)
T ss_pred CCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHh-hc---------cCCCCCEEEeC-CHHHHHHHH
Confidence 42 223333322 224468999999999999999998754 32 15799998774 333333332
Q ss_pred HhcCCCC-cEEEeeCCCCCCCcceeeEEEeChhh--Hhc----c--CCCeEEEecccC-CCcEEEEEEECCEEE------
Q 019600 155 LKAGLTL-PLVAKPLVADGSAKSHELSLAYDQYS--LKK----L--EPPLVLQEFVNH-GGVLFKVYIVGEAIK------ 218 (338)
Q Consensus 155 ~~~~l~f-P~VvKp~~a~Gs~~sh~m~iv~~~~~--L~~----l--~~p~vvQeFI~h-~g~~~KV~VIGd~v~------ 218 (338)
. ..++ |+|+||+.+ + ++.++.++.+.+. +.. + ..++++|+||+. .+.|+||+|+|++++
T Consensus 158 ~--~~~~~pvVvKPl~G--~-gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~ 232 (338)
T PRK12458 158 E--ESPGDKMILKPLQG--S-GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHY 232 (338)
T ss_pred H--HcCCCeEEEEECCC--C-CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccce
Confidence 2 3444 599999994 4 6788998876542 322 1 568999999986 467999999999999
Q ss_pred EEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh---CCcEeEEEEEEeCC
Q 019600 219 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---GLRLFNLDIIREHG 295 (338)
Q Consensus 219 ~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L---Gl~l~GvDvi~~~~ 295 (338)
++.++.... ++|+++ .+.++ ..... ++ .+..+++|.++..+| ||.+.|||+|
T Consensus 233 ~a~~R~~~~---~d~RsN--------~~~Gg-~~~~~-------~l--~~~~~~ia~~~~~~l~~~GL~~~gVDli---- 287 (338)
T PRK12458 233 AAMRRVPAG---GDVRSN--------VHAGG-SVVKH-------TL--TKEELELCEAIRPKLVRDGLFFVGLDIV---- 287 (338)
T ss_pred eEEEEecCC---CCeeec--------ccCCC-cccCc-------CC--CHHHHHHHHHHHHHHhhcCCeEEeEEEE----
Confidence 775553211 222221 11111 11111 22 355799999999888 9999999999
Q ss_pred CCCeEEEEeccC-CC-CCCCcc-----cchHHHHHHHHHHHHhh
Q 019600 296 TRDQFYVIDINY-FP-GYGKMP-----EYEHIFTDFLLSLTQSR 332 (338)
Q Consensus 296 ~g~~~~ViDVN~-fP-g~~gv~-----~~~~~l~~~l~~~i~~~ 332 (338)
|+ +|+|||. +| |+.++. |+...+.++|.+.+..+
T Consensus 288 -~~--~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~~~~~~~ 328 (338)
T PRK12458 288 -GD--KLVEVNVFSPGGLTRINKLNKIDFVEDIIEALERKVQRK 328 (338)
T ss_pred -CC--EEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHHHHHhHH
Confidence 21 5899998 79 555533 34567888888777654
No 12
>PRK05246 glutathione synthetase; Provisional
Probab=99.89 E-value=1.3e-21 Score=188.48 Aligned_cols=251 Identities=15% Similarity=0.197 Sum_probs=167.0
Q ss_pred EEEEEecc---cccccccchHHHhhhhhcceEEEEeeCCCCCCc------------------------------CCCccE
Q 019600 31 VVGYALTS---KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------------QGPFDI 77 (338)
Q Consensus 31 ~VGy~l~~---kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~------------------------------qg~~Dv 77 (338)
.+|+.+-| .|..+....+|.++|+++|+++..+++.+.... ...||+
T Consensus 3 ~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~ 82 (316)
T PRK05246 3 KVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDV 82 (316)
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCE
Confidence 56777654 456667888899999999999988888752211 024899
Q ss_pred EEEccCch-----hHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhH
Q 019600 78 VLHKLTGK-----EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD 152 (338)
Q Consensus 78 ilhK~~~~-----~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~ 152 (338)
|+.|.... .....+.+..+. .|++++|++++++.+.||+.+++++. ++|+|.+.. +.+.+.+
T Consensus 83 v~~R~~~~~~~~~~~~~~~l~~le~-~g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~ 149 (316)
T PRK05246 83 ILMRKDPPFDMEYIYATYLLERAER-PGTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRA 149 (316)
T ss_pred EEEcCCCCCChHHHHHHHHHHHHHh-CCCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHH
Confidence 99996442 111223333333 38999999999999999999877532 689998764 3333434
Q ss_pred HHHhcCCCCcEEEeeCCCCCCCcceeeEEEeC-hhhH-------hcc-CCCeEEEecccCC-CcEEEEEEECCEEEE-EE
Q 019600 153 VVLKAGLTLPLVAKPLVADGSAKSHELSLAYD-QYSL-------KKL-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV-VR 221 (338)
Q Consensus 153 ~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~-~~~L-------~~l-~~p~vvQeFI~h~-g~~~KV~VIGd~v~~-~~ 221 (338)
.+... + |+|+||+.| + ++.++..+.. ...+ ... ..|+++|+||+.. +.|+||+|+|+++++ +.
T Consensus 150 ~~~~~--~-~vVlKP~~G--~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~ 223 (316)
T PRK05246 150 FRAEH--G-DIILKPLDG--M-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYAL 223 (316)
T ss_pred HHHHC--C-CEEEEECCC--C-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhhee
Confidence 33333 3 999999994 4 6778888854 2222 223 5699999999864 679999999999887 54
Q ss_pred -EecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEeCCCC
Q 019600 222 -RFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQLGLRLFNLDIIREHGTR 297 (338)
Q Consensus 222 -R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~LGl~l~GvDvi~~~~~g 297 (338)
|.+.++ +|.+| ++.++ ...+. ++ .+...++|.+++ +.+|+.++|||++ |
T Consensus 224 ~R~~~~~----~~rtN--------~~~Gg-~~~~~-------~l--~~~~~~ia~~~~~~l~~~gl~~~GVDli-----~ 276 (316)
T PRK05246 224 ARIPAGG----ETRGN--------LAAGG-RGEAT-------PL--TERDREICAAIGPELKERGLIFVGIDVI-----G 276 (316)
T ss_pred EecCCCC----CcccC--------ccCCc-eEecc-------CC--CHHHHHHHHHHHHHHHHhCCCEEEEEEe-----C
Confidence 444321 23222 12111 11112 22 244588998888 5779999999999 3
Q ss_pred CeEEEEeccCC-C-CCCCcccch-----HHHHHHHHHHH
Q 019600 298 DQFYVIDINYF-P-GYGKMPEYE-----HIFTDFLLSLT 329 (338)
Q Consensus 298 ~~~~ViDVN~f-P-g~~gv~~~~-----~~l~~~l~~~i 329 (338)
. ||+|||.+ | ||.+++... ..+.+++.+.+
T Consensus 277 -~-~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~~~~ 313 (316)
T PRK05246 277 -D-YLTEINVTSPTGIREIERLTGVDIAGMLWDAIEAKL 313 (316)
T ss_pred -C-EEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2 59999976 6 899887653 44555555444
No 13
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.88 E-value=9.9e-21 Score=194.52 Aligned_cols=236 Identities=16% Similarity=0.223 Sum_probs=156.0
Q ss_pred ccc--hHHHhhhhhcceEEEEeeCCCCCCcCC-CccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHH
Q 019600 44 FLQ--PKLEGLARNKGILFVAIDQNRPLSDQG-PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSML 120 (338)
Q Consensus 44 ~~~--~~l~~~~~~~gi~~~~id~~~~l~~qg-~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~ 120 (338)
+.- +.++++|+++|++++.+|.+..+-..+ .-+.++.+ + ....++++.++..|.||..+.
T Consensus 240 l~~y~~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g~~~~~~~---------------~--s~~~~~s~~ai~~~~DK~~tk 302 (547)
T TIGR03103 240 LNPYARIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSIRCR---------------E--SLSELTSAVAMSLCDDKRLTR 302 (547)
T ss_pred cCHHHHHHHHHHHHcCCcEEEECCCCCEEEecCCceEEEEE---------------e--ccCCCCCHHHHHHhcCHHHHH
Confidence 444 679999999999999987554222100 11222211 1 223678999999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEE-EeChhhHhc-------cC
Q 019600 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LE 192 (338)
Q Consensus 121 ~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~-------l~ 192 (338)
++|+++ |||+|++..+. +.+++.+... .++ |+|+||..+ + ++.+|.+ +.++++|.+ ..
T Consensus 303 ~lL~~a-------GIpVP~~~~~~-~~~~~~~~~~--~~G-~vVVKP~~G--~-~G~Gv~v~v~~~~eL~~a~~~a~~~~ 368 (547)
T TIGR03103 303 RLVSEA-------GLQVPEQQLAG-NGEAVEAFLA--EHG-AVVVKPVRG--E-QGKGISVDVRTPDDLEAAIAKARQFC 368 (547)
T ss_pred HHHHHc-------CcCCCCEEEEC-CHHHHHHHHH--HhC-CEEEEECCC--C-CCcCeEEecCCHHHHHHHHHHHHhcC
Confidence 999975 89999999885 3223333332 355 799999884 4 6889987 899988764 25
Q ss_pred CCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCccccc--------------CC-Cc-e-----------------
Q 019600 193 PPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS--------------TS-AG-V----------------- 239 (338)
Q Consensus 193 ~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~--------------~~-~g-~----------------- 239 (338)
..+++|+|| .|.+||++|||++++++.++-.+.+-. +.. .. .| .
T Consensus 369 ~~vlvEe~i--~G~d~Rv~Vigg~vvaa~~R~~~~V~G-DG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g 445 (547)
T TIGR03103 369 DRVLLERYV--PGEDLRLVVIDFEVVAAAVRRPPEVIG-DGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAG 445 (547)
T ss_pred CcEEEEEec--cCCeEEEEEECCEEEEEEEecCcEEEe-CCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcC
Confidence 689999999 599999999999999885554443210 000 00 00 0
Q ss_pred eeecCccccc---------ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 240 FRFPRVSCAA---------ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 240 ~~~~~~s~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
|+++++-..| +.+.+..... + .-...+...++|.++++++||.+.|||+|.++.++..++|||||..||
T Consensus 446 ~~~~~V~~~G~~v~l~~~~Nl~tGg~~~d-v-td~~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pg 523 (547)
T TIGR03103 446 LDLDDVLPEGQRLRVRRTANLHTGGTIHD-V-TEQLHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPG 523 (547)
T ss_pred CCccccCCCCCEEEEecCCcccCCCeeEe-c-ccccCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCcc
Confidence 1111111000 0001111100 1 011235679999999999999999999999764444689999999999
Q ss_pred CCCcc
Q 019600 311 YGKMP 315 (338)
Q Consensus 311 ~~gv~ 315 (338)
+.+-+
T Consensus 524 l~~h~ 528 (547)
T TIGR03103 524 LANHE 528 (547)
T ss_pred ccccC
Confidence 99764
No 14
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.87 E-value=2e-20 Score=178.33 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=160.6
Q ss_pred HHHhhhhhcceEEEEeeCCCCCC----cCCCccEEEEccCchhH-HHHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHH
Q 019600 48 KLEGLARNKGILFVAIDQNRPLS----DQGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQ 121 (338)
Q Consensus 48 ~l~~~~~~~gi~~~~id~~~~l~----~qg~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ViDp-~~ai~~l~dR~~~~~ 121 (338)
.+.++.++.|++++.||....+. +...+|+++..+.+... ...++.+.+. -|++++.+ +.++..++||..+.+
T Consensus 23 ~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~-~gip~~G~~~~a~~i~~DK~~~k~ 101 (299)
T PRK14571 23 RVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDF-LGIRYTGSDAFSSMICFDKLLTYR 101 (299)
T ss_pred HHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHH
Confidence 37778899999999998776432 23579999998865311 1345565544 58999965 899999999999988
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------CCC
Q 019600 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPP 194 (338)
Q Consensus 122 ~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p 194 (338)
.|+. +|++|++..+.... ....++||+|+||..++ +|.++.++.+.++|.+. ..+
T Consensus 102 ~l~~--------~ip~p~~~~~~~~~-------~~~~l~~P~vvKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~ 163 (299)
T PRK14571 102 FLKG--------TVEIPDFVEIKEFM-------KTSPLGYPCVVKPRREG---SSIGVFICESDEEFQHALKEDLPRYGS 163 (299)
T ss_pred HHhc--------CCCCCCEEEEechh-------hhhhcCCCEEEecCCCC---CcCCEEEECCHHHHHHHHHHHHhhCCc
Confidence 8872 69999998884211 12458999999998854 36788999999887642 357
Q ss_pred eEEEecccCCCcEEEEEEECCE----EEEEEEecCCCCCcccccCCCceeeecCccccccc--CCCCCCCccccCCCChH
Q 019600 195 LVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRP 268 (338)
Q Consensus 195 ~vvQeFI~h~g~~~KV~VIGd~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~ 268 (338)
+++||||+ |+++.|.|+|+. +........ ..++|+|......+.. ..+..+++.. .+
T Consensus 164 vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~----------~~~~~~~~~k~~~g~~~~~~p~~l~~~~-----~~ 226 (299)
T PRK14571 164 VIVQEYIP--GREMTVSILETEKGFEVLPILELRP----------KRRFYDYVAKYTKGETEFILPAPLNPEE-----ER 226 (299)
T ss_pred EEEEcccc--ceEEEEEEEcCCCCeeeeceEEEec----------CCCccccccccCCCCeeEEeCCCCCHHH-----HH
Confidence 99999995 999999999763 222211110 1122333222211110 0122222211 34
Q ss_pred HHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccch
Q 019600 269 LLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 318 (338)
Q Consensus 269 ~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~ 318 (338)
.++++|.++.++||+ ++++||+++++ | ++||+|||..||+.....++
T Consensus 227 ~i~~~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~s~~~ 274 (299)
T PRK14571 227 LVKETALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTELSDLP 274 (299)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCccCHHH
Confidence 688999999999997 68889999863 3 59999999999999765543
No 15
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=7.7e-20 Score=179.39 Aligned_cols=218 Identities=17% Similarity=0.282 Sum_probs=149.2
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceeeChH-HHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC----
Q 019600 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA---- 147 (338)
Q Consensus 74 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~ViDp~-~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~---- 147 (338)
.+|+++.-+.+.... ..+|.+.+. -|++.+.+. .+...++||..+.++|+++ +||||++..+....
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccccc
Confidence 589999887653211 355565543 589999988 5999999999999999975 89999988874321
Q ss_pred -CChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEE
Q 019600 148 -SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKV 219 (338)
Q Consensus 148 -~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v~~ 219 (338)
++..+. ....++||+|+||..+ || |.|+.++.+.++|.. .+.++++||||. |+++.|.|+|+....
T Consensus 159 ~~~~~~~-~~~~lg~PviVKP~~~-Gs--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~ 232 (364)
T PRK14570 159 KEGIKKD-IKEVLGYPVIVKPAVL-GS--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQIK 232 (364)
T ss_pred hHHHHHH-HHHhcCCCEEEEeCCC-CC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCCce
Confidence 111111 1246899999999885 44 668999999988765 356899999995 999999999984211
Q ss_pred EEEecCCCCCcccccC-CCceeeecCccc--cccc---CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019600 220 VRRFSLPDVTKQDLST-SAGVFRFPRVSC--AAAS---ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIR 292 (338)
Q Consensus 220 ~~R~Slp~~~~~~~~~-~~g~~~~~~~s~--~~~~---~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~ 292 (338)
+ +|. .++.. ..++|+|...+. .+.. ..++.++++. .+.++++|.++.++||+. ++.||+++
T Consensus 233 v----~~~---~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~-----~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 233 I----FTP---GEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKH-----LLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred E----eee---EEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 1 111 11111 123556544331 1110 1233333222 457899999999999995 55699999
Q ss_pred eCCCCCeEEEEeccCCCCCCCcccch
Q 019600 293 EHGTRDQFYVIDINYFPGYGKMPEYE 318 (338)
Q Consensus 293 ~~~~g~~~~ViDVN~fPg~~gv~~~~ 318 (338)
+..+| ++||+|||..||+.....++
T Consensus 301 ~~~~g-~~yvlEiNt~PG~t~~S~~p 325 (364)
T PRK14570 301 EKDTG-LIYLNEINTIPGFTDISMFA 325 (364)
T ss_pred ECCCC-cEEEEEeeCCCCCCcccHHH
Confidence 85334 69999999999998765443
No 16
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.85 E-value=1.6e-19 Score=175.04 Aligned_cols=239 Identities=16% Similarity=0.213 Sum_probs=161.5
Q ss_pred HHhhhhhcceEEEEeeCCCC------------CC---------------cCC--CccEEEEccCchhH-HHHHHHHHHhC
Q 019600 49 LEGLARNKGILFVAIDQNRP------------LS---------------DQG--PFDIVLHKLTGKEW-RQILEEYRQTH 98 (338)
Q Consensus 49 l~~~~~~~gi~~~~id~~~~------------l~---------------~qg--~~DvilhK~~~~~~-~~~l~~~~~~~ 98 (338)
..++.++.|+++.+||.++. +. +.. .+|+++.=+.+... -..++.+.+.
T Consensus 27 v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gedg~iq~lle~- 105 (333)
T PRK01966 27 VLKALDKEKYEVVPIGITKDGRWYLIDADNMELADDDNDKEDLSLLILPSGGSEEVDVVFPVLHGPPGEDGTIQGLLEL- 105 (333)
T ss_pred HHHHhcccCCEEEEEEECCCCCEeeccchhhhcccccccccccchhccccccCccCCEEEEccCCCCCCCcHHHHHHHH-
Confidence 55666778888888887763 00 011 58999876644211 1245566544
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC--hhHHHHhcCCCCcEEEeeCCCCCCCc
Q 019600 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS--IPDVVLKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~--~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
.|++.+-+ +.+...++||..+.++|+++ +||+|++..+...... .... ....++||+|+||..++|
T Consensus 106 ~gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~-~~~~~~~P~vVKP~~~gs--- 174 (333)
T PRK01966 106 LGIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEASLAE-IEAKLGLPVFVKPANLGS--- 174 (333)
T ss_pred cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchhhHHH-HHHhcCCCEEEEeCCCCC---
Confidence 57888765 78999999999999999975 8999999988533221 1111 234689999999988543
Q ss_pred ceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccc
Q 019600 176 SHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA 248 (338)
Q Consensus 176 sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~ 248 (338)
|.++.++.+.++|.. .+.++++|+||+ |+++.|.|+|+... .+|. +++....++|+|......
T Consensus 175 S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~-----~~~~---~ei~~~~~~~d~~~ky~~ 244 (333)
T PRK01966 175 SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPK-----ASVP---GEIVKPDDFYDYEAKYLD 244 (333)
T ss_pred ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCe-----Eccc---EEEecCCceEcHHHccCC
Confidence 678999999988865 367899999995 89999999996211 0111 111112235665543322
Q ss_pred ccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCCCCCccc
Q 019600 249 AAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 316 (338)
Q Consensus 249 ~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 316 (338)
+.. ..++.+++.. .+.++++|.++.++||+ .++.+|++++. +| ++||+|||..||++...-
T Consensus 245 ~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g-~~~vlEiNt~Pg~t~~s~ 308 (333)
T PRK01966 245 GSAELIIPADLSEEL-----TEKIRELAIKAFKALGCSGLARVDFFLTE-DG-EIYLNEINTMPGFTPISM 308 (333)
T ss_pred CCceEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC-CEEEEEeeCCCCCCcccH
Confidence 111 1222232221 45789999999999998 56679999975 35 689999999999986543
No 17
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.85 E-value=8.3e-20 Score=193.28 Aligned_cols=233 Identities=16% Similarity=0.278 Sum_probs=151.9
Q ss_pred HHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhcc
Q 019600 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMN 127 (338)
Q Consensus 48 ~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~ 127 (338)
.++++|.++|+.+..++-.. +..+........++. .+ ..-++..++..+.||..+.++|++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~~-----------~v~lgyG~~~~~i~~-----~~-~~~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDGS-----------LVQLGYGKYQRRIQA-----AE-TDQTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCCC-----------eEecCCcHHHHHHHH-----hc-CCCCcHHHHHHhCCHHHHHHHHHHC-
Confidence 68899999999998876533 112221111122221 12 2377889999999999999999975
Q ss_pred ccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEE-EeChhhHhcc-------CCCeEEEe
Q 019600 128 LSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------EPPLVLQE 199 (338)
Q Consensus 128 l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~l-------~~p~vvQe 199 (338)
+||+|++..+. +.+++.+. ...++||+|+||..+ + ++.+|.+ +.++++|.+. ..++++|+
T Consensus 226 ------GIPvP~~~~v~-s~~~a~~~--a~~iG~PvVVKP~~G--~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVT-SAEDAWEA--AEEIGYPVVVKPLDG--N-HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeC-CHHHHHHH--HHHcCCCEEEEECCC--C-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 89999998874 33233332 245899999999874 4 5789998 8999887642 56899999
Q ss_pred cccCCCcEEEEEEECCEEEEEEEecCCCCCcccccC--------C------Cc---------------------eeeecC
Q 019600 200 FVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S------AG---------------------VFRFPR 244 (338)
Q Consensus 200 FI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~--------~------~g---------------------~~~~~~ 244 (338)
||+ |++|||+|+|++++++.|+..+.+..+...+ | .+ -++.++
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~s 371 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDS 371 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccc
Confidence 995 9999999999999998777655431110000 0 00 001111
Q ss_pred ccccc---------ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCC----CCCeEEEEeccCCCCC
Q 019600 245 VSCAA---------ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG----TRDQFYVIDINYFPGY 311 (338)
Q Consensus 245 ~s~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~----~g~~~~ViDVN~fPg~ 311 (338)
+...| +.+.+........+. .+...++|.++++++|++++|||++.++- ....+.|||||..||+
T Consensus 372 V~~~G~~v~l~~~~N~s~Gg~~~d~td~i--~~~~~~~a~~aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi 449 (727)
T PRK14016 372 VPPKGEKVYLRRNANLSTGGTAIDVTDEV--HPENAAIAERAAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGL 449 (727)
T ss_pred cCCCCCEEEEeccccccCCCeeEeccccc--CHHHHHHHHHHHHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcch
Confidence 11000 000111100000112 34579999999999999999999999641 0113689999999999
Q ss_pred CCc
Q 019600 312 GKM 314 (338)
Q Consensus 312 ~gv 314 (338)
...
T Consensus 450 ~~~ 452 (727)
T PRK14016 450 RMH 452 (727)
T ss_pred hhc
Confidence 853
No 18
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=2.1e-19 Score=171.50 Aligned_cols=232 Identities=16% Similarity=0.162 Sum_probs=157.6
Q ss_pred HHhhhhhcceEEEEeeCCC-CCCc---CCCccEEEEccCchhH-HHHHHHHHHhCCCceeeC-hHHHHHHhccHHHHHHH
Q 019600 49 LEGLARNKGILFVAIDQNR-PLSD---QGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQC 122 (338)
Q Consensus 49 l~~~~~~~gi~~~~id~~~-~l~~---qg~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ViD-p~~ai~~l~dR~~~~~~ 122 (338)
..++.++.|++++.+|.+. .+.. ..++|+++.=+.+... ...++...+. -|++++. ++.++..|+||..+-+.
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~-~gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEM-LEIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHHCHHHHHHH
Confidence 6667788999999999863 2111 3468888875543211 1345555544 3788764 66999999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc------CCCeE
Q 019600 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------EPPLV 196 (338)
Q Consensus 123 L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------~~p~v 196 (338)
|+++ +||+|++..+.... . ....++||+|+||..+ || |.++.+|.+.++|... ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~~----~--~~~~~~~P~vVKP~~g-gs--s~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDKL----V--AEDEISFPVAVKPSSG-GS--SIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchhh----h--hHhhcCCCEEEEeCCC-CC--CcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 9975 89999998875211 1 1346899999999884 33 6889999999988642 24799
Q ss_pred EEecccCCCcEEEEEEECCEEEE-EEEecCCCCCcccccCCCceeeecCccccccc-CCCCCCCccccCCCChHHHHHHH
Q 019600 197 LQEFVNHGGVLFKVYIVGEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS-ADDADLDPCVAELPPRPLLERLA 274 (338)
Q Consensus 197 vQeFI~h~g~~~KV~VIGd~v~~-~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~-~~~~~~~~~~~~~p~~~~~~~lA 274 (338)
+|||| .|++|.|.|+|+.+.. +...+.. .+|++.......+. ..+..+.+. ..+.++++|
T Consensus 170 vEefI--~G~E~tv~vl~~~~~~~~~i~~~~-----------~~~~~~~k~~~~~~~~~P~~l~~~-----~~~~i~~~a 231 (296)
T PRK14569 170 IEQWV--TGKEITVAIVNDEVYSSVWIEPQN-----------EFYDYESKYSGKSIYHSPSGLCEQ-----KELEVRQLA 231 (296)
T ss_pred EEccc--ccEEEEEEEECCcCcceEEEecCC-----------CcCChhhccCCCcEEEeCCCCCHH-----HHHHHHHHH
Confidence 99999 4899999999986532 2222111 12222221111000 011222111 135789999
Q ss_pred HHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCcccc
Q 019600 275 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 317 (338)
Q Consensus 275 ~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 317 (338)
.++.++||+. +++||++.+. +| ++||+|||..||++.-..+
T Consensus 232 ~~~~~~Lg~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 232 KKAYDLLGCSGHARVDFIYDD-RG-NFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred HHHHHHhCCceEEEEEEEEcC-CC-CEEEEEeeCCCCCCCcCHH
Confidence 9999999975 5569999975 34 6999999999999865444
No 19
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.84 E-value=3.3e-19 Score=173.45 Aligned_cols=211 Identities=19% Similarity=0.263 Sum_probs=144.6
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019600 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (338)
Q Consensus 74 ~~DvilhK~~~~~~-~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~ 151 (338)
.+|+++.-+.+... ...+|.+.+. .|++.+ .++.+...|+||..+.++|+++ +|++|++..+.... ..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-RP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-hh-
Confidence 47888877654211 1355666543 578877 5678999999999999999975 89999999885332 11
Q ss_pred HHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEE--EEEEE
Q 019600 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAI--KVVRR 222 (338)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v--~~~~R 222 (338)
....++||+|+||..+ || |.++.++.+.++|.. ++..+++||||+ |+++.|.|+|+.- .+..
T Consensus 160 ---~~~~l~~P~iVKP~~~-gs--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~~~~~~~~- 230 (343)
T PRK14568 160 ---DAATLTYPVFVKPARS-GS--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNGADLVVGE- 230 (343)
T ss_pred ---hhhhcCCCEEEEeCCC-CC--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCCCCcceec-
Confidence 1246899999999985 33 689999999998864 366899999995 8999999998731 1110
Q ss_pred ecCCCCCcccccCCCceeeecCcccc--cc----cCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCC
Q 019600 223 FSLPDVTKQDLSTSAGVFRFPRVSCA--AA----SADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHG 295 (338)
Q Consensus 223 ~Slp~~~~~~~~~~~g~~~~~~~s~~--~~----~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~ 295 (338)
...+....++|+++..... +. ...++.+++.. .+.++++|.++.++||+ .++.+|++.+.
T Consensus 231 -------~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~- 297 (343)
T PRK14568 231 -------VDQIRLSHGFFRIHQENEPEKGSENSTIIVPADISAEE-----RSRVQETAKAIYRALGCRGLARVDMFLQE- 297 (343)
T ss_pred -------ceEEecCCCccchhhhhccccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCCcEEEEEEEEeC-
Confidence 0011112245555432210 00 00122222111 35689999999999999 57779999985
Q ss_pred CCCeEEEEeccCCCCCCCcccc
Q 019600 296 TRDQFYVIDINYFPGYGKMPEY 317 (338)
Q Consensus 296 ~g~~~~ViDVN~fPg~~gv~~~ 317 (338)
+| .+||+|||..||+.....+
T Consensus 298 ~g-~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 298 DG-TVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred CC-CEEEEEeeCCCCCCccCHH
Confidence 45 6899999999999865434
No 20
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=5.3e-19 Score=172.34 Aligned_cols=216 Identities=17% Similarity=0.189 Sum_probs=142.2
Q ss_pred CccEEE---EccCchhHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-
Q 019600 74 PFDIVL---HKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS- 148 (338)
Q Consensus 74 ~~Dvil---hK~~~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~- 148 (338)
.+|+++ |...++.. .++.+.+. -|++++ .++.++..|+||..+.+.|+++ +|++|++..+.+...
T Consensus 88 ~~d~~f~~~hg~~gEdg--~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGEDG--RIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCCc--HHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccc
Confidence 356644 44333322 45555543 478887 4588999999999999999975 899999998853221
Q ss_pred -ChhHHH-HhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECC----
Q 019600 149 -SIPDVV-LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE---- 215 (338)
Q Consensus 149 -~~~~~l-~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~g~~~KV~VIGd---- 215 (338)
...+.+ ....++||+|+||..+ || |.++.++.+.++|... +.++++|||| .|++|.|.|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~g-gs--S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI--~G~E~sv~vi~~~~~g 232 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVEG-GS--SVSTYKITNAEQLMTLLALIFESDSKVMSQSFL--SGTEVSCGVLERYRGG 232 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCc--ccEEEEEEEEeCccCC
Confidence 111111 1245899999999885 33 6889999999988652 5689999999 489999999973
Q ss_pred EEEEEEEecCCCCCcccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019600 216 AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIR 292 (338)
Q Consensus 216 ~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~ 292 (338)
++... .+|-. +.....++|+|......+.. ..++.+++.. .+.++++|.++.++||+. +.++|+++
T Consensus 233 ~~~~~---~l~~~---ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~~Lg~~G~~rvD~~~ 301 (347)
T PRK14572 233 KRNPI---ALPAT---EIVPGGEFFDFESKYKQGGSEEITPARISDQE-----MKRVQELAIRAHESLGCKGYSRTDFII 301 (347)
T ss_pred CCCce---ecccE---EEecCCCccCHHHccCCCCeEEEECCCCCHHH-----HHHHHHHHHHHHHHhCCcceeEEEEEE
Confidence 21100 01100 11112234555443322111 0122232221 347899999999999987 55799999
Q ss_pred eCCCCCeEEEEeccCCCCCCCcccch
Q 019600 293 EHGTRDQFYVIDINYFPGYGKMPEYE 318 (338)
Q Consensus 293 ~~~~g~~~~ViDVN~fPg~~gv~~~~ 318 (338)
++ | .+||+|||..||+....-++
T Consensus 302 ~~--~-~~~vlEiNt~PG~t~~S~~p 324 (347)
T PRK14572 302 VD--G-EPHILETNTLPGMTETSLIP 324 (347)
T ss_pred EC--C-cEEEEeeeCCCCCCcccHHH
Confidence 63 3 58999999999999764443
No 21
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.83 E-value=7.1e-19 Score=186.22 Aligned_cols=236 Identities=14% Similarity=0.147 Sum_probs=154.9
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCCcCC---CccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHHH
Q 019600 43 SFLQPKLEGLARNKGILFVAIDQNRPLSDQG---PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSM 119 (338)
Q Consensus 43 ~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg---~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~ 119 (338)
.++.+.++++|.++|+.+..+|.+..+...+ ..+.+.. -.....|+..+...+.||..|
T Consensus 431 ~~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~t 492 (752)
T PRK02471 431 ELSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVVT 492 (752)
T ss_pred ChhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHHH
Confidence 4567789999999999999999876543321 1222211 134578899999999999999
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEe---ChhhHhc------
Q 019600 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK------ 190 (338)
Q Consensus 120 ~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~---~~~~L~~------ 190 (338)
.++|++. |||+|++.++. +.+++..... .-.+||+|+||..+ + +|.++.++. +.+++.+
T Consensus 493 k~lL~~~-------GIpvP~~~~~~-~~e~a~~~~~-~~~g~PvVVKP~~g--~-~G~GV~~~~~~~~~eel~~A~~~a~ 560 (752)
T PRK02471 493 KKILAEA-------GFPVPAGDEFT-SLEEALADYS-LFADKAIVVKPKST--N-FGLGISIFKEPASLEDYEKALEIAF 560 (752)
T ss_pred HHHHHHC-------CcCCCCEEEEc-CHHHHHHHHH-HhcCCCEEEEECCC--C-CcCCeEEecCcCCHHHHHHHHHHHH
Confidence 9999965 89999999885 2222222222 22489999999984 3 577888764 4555543
Q ss_pred -cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccC--------CC------ce----------------
Q 019600 191 -LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------SA------GV---------------- 239 (338)
Q Consensus 191 -l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~--------~~------g~---------------- 239 (338)
.+..+++|||| .|++|+|+|||++++++.++..+++.-+...+ +. +.
T Consensus 561 ~~~~~vlVEEfI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~ 638 (752)
T PRK02471 561 REDSSVLVEEFI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLM 638 (752)
T ss_pred hcCCcEEEEecc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHH
Confidence 25679999999 59999999999999988666555543221110 10 00
Q ss_pred -----eeecCccccccc---------CCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCC------CCCe
Q 019600 240 -----FRFPRVSCAAAS---------ADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG------TRDQ 299 (338)
Q Consensus 240 -----~~~~~~s~~~~~---------~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~------~g~~ 299 (338)
++++++...|.. +.+++. -.+.+. ..+...++|.++++++|+.++|||++.++- .+..
T Consensus 639 L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~-~dvtd~-ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~ 716 (752)
T PRK02471 639 LKQQGLTPDSIPKKGEIVYLRENSNISTGGDS-IDMTDD-MDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPN 716 (752)
T ss_pred HHHcCCCccccCCCCCEEEecCCCccCCCCee-Eecccc-cCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCC
Confidence 111111111100 000100 001111 235679999999999999999999998751 1114
Q ss_pred EEEEeccCCCCCC
Q 019600 300 FYVIDINYFPGYG 312 (338)
Q Consensus 300 ~~ViDVN~fPg~~ 312 (338)
+.|||||..||+.
T Consensus 717 ~~IiEvN~~P~l~ 729 (752)
T PRK02471 717 YGIIELNFNPAMY 729 (752)
T ss_pred eEEEEecCCCchh
Confidence 7899999999975
No 22
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.81 E-value=7.2e-19 Score=189.36 Aligned_cols=228 Identities=17% Similarity=0.287 Sum_probs=151.3
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc--CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSD--QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQC 122 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~--qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~ 122 (338)
+.+.++++|.++||.+..+|-.. +-+ +|..--.+.- ...=.|+..++..+.||..+.++
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~-~~qlg~g~~~~~~~~------------------~~t~~~s~ia~~ia~DK~~tk~l 220 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGS-LVQLGYGSRQKRIQA------------------TETDRTSAIAVEIACDKDLTKEI 220 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCC-EEEecCCCEEEEEEe------------------ecCCCCcHHHHHHHcCHHHHHHH
Confidence 45678889999999999887533 322 1211111111 11234677899999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEE-EeChhhHhcc-------CCC
Q 019600 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------EPP 194 (338)
Q Consensus 123 L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~l-------~~p 194 (338)
|++. +||+|++.++. +.+++.+. ...++||+|+||..+ + .+.++.+ +.++++|.+. ..+
T Consensus 221 L~~~-------GIpvP~~~~~~-s~~ea~~~--~~~ig~PvVVKP~~g--~-~G~GV~l~v~s~~el~~a~~~a~~~~~~ 287 (864)
T TIGR02068 221 LSDA-------GVPVPEGTVVQ-SAEDAWEA--AQDLGYPVVIKPYDG--N-HGRGVTINILTRDEIESAYEAAVEESSG 287 (864)
T ss_pred HHHc-------CcCCCCEEEEC-CHHHHHHH--HHHcCCCEEEEECCC--C-CccCEEEEeCCHHHHHHHHHHHHhhCCc
Confidence 9975 89999999885 22233332 235799999999984 3 5788998 8999887642 568
Q ss_pred eEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccC--------CC------c---e------------------
Q 019600 195 LVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------SA------G---V------------------ 239 (338)
Q Consensus 195 ~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~--------~~------g---~------------------ 239 (338)
+++|+||+ |++|||+|+|++++++.++-.|++.-+...+ |. + .
T Consensus 288 vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g 365 (864)
T TIGR02068 288 VIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQG 365 (864)
T ss_pred EEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcC
Confidence 99999994 8999999999999988666555432110000 00 0 0
Q ss_pred eee---------------cCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCC----CCeE
Q 019600 240 FRF---------------PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGT----RDQF 300 (338)
Q Consensus 240 ~~~---------------~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~----g~~~ 300 (338)
++. .|.|+++...+. ..++ .+...++|.++++++||+++|||++.++-+ +..+
T Consensus 366 ~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~------td~i--~~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~ 437 (864)
T TIGR02068 366 LTLDSVPAKGRIVYLRATANLSTGGVAIDR------TDEI--HPENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDG 437 (864)
T ss_pred CCccccCCCCCEEEEeccccccCCCceEec------cccc--CHHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCc
Confidence 011 111211110000 1122 345799999999999999999999986311 1135
Q ss_pred EEEeccCCCCCCCc
Q 019600 301 YVIDINYFPGYGKM 314 (338)
Q Consensus 301 ~ViDVN~fPg~~gv 314 (338)
.|||||+.||+...
T Consensus 438 ~iiEvN~~p~~~~h 451 (864)
T TIGR02068 438 AIVEVNAAPGLRMH 451 (864)
T ss_pred EEEEEcCCcchhhc
Confidence 89999999998744
No 23
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.81 E-value=1e-19 Score=164.96 Aligned_cols=164 Identities=20% Similarity=0.344 Sum_probs=110.7
Q ss_pred CCccCCcEEEEecCCCChhH-HHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCC
Q 019600 133 GKVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHG 204 (338)
Q Consensus 133 ~~i~~P~~~~~~~~~~~~~~-~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~ 204 (338)
.||+||+++++......... .-....++||+|+||..+ || |.|+.+|++.++|.. ++.++++|||| +
T Consensus 5 ~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~ 79 (203)
T PF07478_consen 5 AGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--S 79 (203)
T ss_dssp TT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----S
T ss_pred cCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--c
Confidence 48999999999643311110 012356999999999984 55 778999999998875 37799999999 7
Q ss_pred CcEEEEEEECC---EEEEEEEecCCCCCcccccCCCceeeecCcccc--c--ccCCCCCCCccccCCCChHHHHHHHHHH
Q 019600 205 GVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA--A--ASADDADLDPCVAELPPRPLLERLAKEL 277 (338)
Q Consensus 205 g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~--~--~~~~~~~~~~~~~~~p~~~~~~~lA~~l 277 (338)
|++|.|.|+|+ ++.-... +....++|+|+..... + ....++.+++.. .+.++++|.++
T Consensus 80 G~E~tv~vl~~~~~~~~~~~e----------i~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~-----~~~i~~~a~~a 144 (203)
T PF07478_consen 80 GREFTVGVLGNGEPRVLPPVE----------IVFPSEFYDYEAKYQPADSETEYIIPADLSEEL-----QEKIKEIAKKA 144 (203)
T ss_dssp SEEEEEEEEESSSTEEEEEEE----------EEESSSEEEHHHHHSGCCSCEEEESS-SS-HHH-----HHHHHHHHHHH
T ss_pred ccceEEEEEecCCcccCceEE----------EEcCCCceehhheeccCCCceEEEecCCCCHHH-----HHHHHHHHHHH
Confidence 99999999994 3332222 2223367777765532 1 111233333222 46789999999
Q ss_pred HHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCCCCcccch
Q 019600 278 RRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYGKMPEYE 318 (338)
Q Consensus 278 ~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~ 318 (338)
.++||+.-++ ||+.+++ +| ++|++|||..||+.....++
T Consensus 145 ~~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~p 184 (203)
T PF07478_consen 145 FKALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLFP 184 (203)
T ss_dssp HHHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHHH
T ss_pred HHHHcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHHH
Confidence 9999998887 9999985 45 79999999999998766554
No 24
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.78 E-value=2.2e-17 Score=173.21 Aligned_cols=237 Identities=14% Similarity=0.197 Sum_probs=153.3
Q ss_pred ccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHH
Q 019600 42 KSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (338)
Q Consensus 42 ~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~ 121 (338)
-.++.|.|+..|.++| .+..+|.+..+. +++.... ++|+.+ ..+.-.|+..+...+.||..+-+
T Consensus 418 ~~~stQ~Li~~Ai~rG-~v~vlD~~~~~~----------~L~~g~~----~~~v~~-~s~ts~tS~ia~~i~~DK~~TK~ 481 (737)
T TIGR01435 418 MELSTQWKLFDVIQKG-KVEILDEAEQFL----------RLQKGDH----IEYVKN-ANMTSKDNYVSPLIMENKVVTKK 481 (737)
T ss_pred ccHhHHHHHHHHHHCC-CEEEeCCCCCee----------EeecCCc----ceEEec-ceecCCccHHHHHHhcCHHHHHH
Confidence 3577889999999999 888898876543 3321100 112211 13445788899999999999999
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCC-CCcEEEeeCCCCCCCcceeeEEEeC---hhhHhc-------
Q 019600 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHELSLAYD---QYSLKK------- 190 (338)
Q Consensus 122 ~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l-~fP~VvKp~~a~Gs~~sh~m~iv~~---~~~L~~------- 190 (338)
+|++. |||||++.++.+. ....... ..+ +||+||||..++ .|.|+.++.+ .+++.+
T Consensus 482 iL~~a-------GIPVP~g~~~~~~-~~a~~~~--~~~~g~PVVVKP~~g~---~G~GVsi~~~~~~~eel~~Al~~A~~ 548 (737)
T TIGR01435 482 VLAEA-------GFRVPFGDEFSSQ-ALALEAF--SLFENKAIVVKPKSTN---YGLGITIFKNGFTLEDFQEALNIAFS 548 (737)
T ss_pred HHHHc-------CcCCCCEEEECCH-HHHHHHH--HHhcCCCEEEeeCCCC---CcCCeEEecCcCCHHHHHHHHHHHHh
Confidence 99975 8999999988532 1222211 223 799999999843 4778888876 455543
Q ss_pred cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccC--------C------Cce-----------------
Q 019600 191 LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S------AGV----------------- 239 (338)
Q Consensus 191 l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~--------~------~g~----------------- 239 (338)
.+..+++|+|| .|++|||+|||+++.++.++..+++.-+...+ + .+.
T Consensus 549 ~~~~VLVEefI--~G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~ 626 (737)
T TIGR01435 549 EDSSVIIEEFL--PGTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLK 626 (737)
T ss_pred cCCeEEEEecc--cCCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHH
Confidence 25579999999 49999999999999988666555542211100 0 000
Q ss_pred ---eeecCccccccc---------CCCCCCCcccc-CCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCC------CeE
Q 019600 240 ---FRFPRVSCAAAS---------ADDADLDPCVA-ELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTR------DQF 300 (338)
Q Consensus 240 ---~~~~~~s~~~~~---------~~~~~~~~~~~-~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g------~~~ 300 (338)
++++++...|.. +.+++. -++. ++ .+..+++|.++++++|+.+.|||+|.++-+. ..+
T Consensus 627 ~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~-iDvTd~i--hp~~~~lA~~aa~algl~i~GVDii~~di~~p~~~~~~~~ 703 (737)
T TIGR01435 627 EQGLTIDSIPKKEQIVYLRENSNVSTGGDS-IDMTDEM--DDSYKQIAIRIATAVGAAICGVDLIIPDETIPDTDKHAIW 703 (737)
T ss_pred HcCCCccccCCCCCEEEEcCCCcccCCCce-Eeccccc--CHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCccccccce
Confidence 011111110000 000100 0011 22 3457999999999999999999999864211 137
Q ss_pred EEEeccCCCCCC
Q 019600 301 YVIDINYFPGYG 312 (338)
Q Consensus 301 ~ViDVN~fPg~~ 312 (338)
.|||||..||+.
T Consensus 704 ~iiEvN~~P~l~ 715 (737)
T TIGR01435 704 GVIEANFNPAMH 715 (737)
T ss_pred EEEEEcCCcchh
Confidence 899999999975
No 25
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.77 E-value=4.8e-18 Score=173.21 Aligned_cols=262 Identities=21% Similarity=0.263 Sum_probs=187.4
Q ss_pred eEEEEEEecccccccccchHHH-hhhhhcceEEEE----eeCCCCCCcCCCccEEEEccCchhHHHHHHHHHH-hCCCce
Q 019600 29 LVVVGYALTSKKTKSFLQPKLE-GLARNKGILFVA----IDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQ-THPEVT 102 (338)
Q Consensus 29 ~~~VGy~l~~kK~~~~~~~~l~-~~~~~~gi~~~~----id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~-~~p~v~ 102 (338)
..+||.|..+||.+|=...... +...-.=++++. +-++.|.+.+.-+|++|--.+..--....++|++ ++| .
T Consensus 40 ~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnP--F 117 (1018)
T KOG1057|consen 40 QIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP--F 117 (1018)
T ss_pred ceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCC--e
Confidence 4599999999998887665533 343333344443 4467788888999999977766545677888987 445 7
Q ss_pred eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC-hhHHHH-------h--cCCCCcEEEeeCCCCC
Q 019600 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-IPDVVL-------K--AGLTLPLVAKPLVADG 172 (338)
Q Consensus 103 ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~-~~~~l~-------~--~~l~fP~VvKp~~a~G 172 (338)
|||.+.-...++||...|+.|+.. ||++|++.+++++..+ -...+. - ..+.=|+|-||+.|
T Consensus 118 viNdL~mQyll~DRR~Vy~iLe~~-------gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~-- 188 (1018)
T KOG1057|consen 118 VINDLDMQYLLQDRREVYSILEAE-------GIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA-- 188 (1018)
T ss_pred eeccccHHHHHHHHHHHHHHHHHc-------CCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc--
Confidence 999999999999999999999864 8999999999765421 111111 1 12344999999995
Q ss_pred CCcceeeEEEeChhh-------Hhcc---------------CCCeEEEecccCCCcEEEEEEECCEEEEE-EEecCCCCC
Q 019600 173 SAKSHELSLAYDQYS-------LKKL---------------EPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPDVT 229 (338)
Q Consensus 173 s~~sh~m~iv~~~~~-------L~~l---------------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~-~R~Slp~~~ 229 (338)
+-|+++|.+.-.. ++++ ...++.+||++.+|.|.|||.||..+..+ .|+|. .+.
T Consensus 189 --EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSP-vvD 265 (1018)
T KOG1057|consen 189 --EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP-VVD 265 (1018)
T ss_pred --ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCc-ccc
Confidence 6999999997621 3332 23599999999999999999999987766 88874 321
Q ss_pred cccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCC
Q 019600 230 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFP 309 (338)
Q Consensus 230 ~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fP 309 (338)
|... ...++.++.-. ..+.+ .-+.+|.+++-+++-.+.|||+++.+ | .-||||||.|-
T Consensus 266 --------GkV~--------Rns~GKEvRYp-v~Ls~--~EK~iA~KVciAF~Q~VCGFDLLRa~--G-~SYVcDVNGfS 323 (1018)
T KOG1057|consen 266 --------GKVE--------RNSDGKEVRYP-VILNS--SEKQIARKVCIAFKQTVCGFDLLRAN--G-KSYVCDVNGFS 323 (1018)
T ss_pred --------ceee--------ecCCCceeece-eecCh--hhHHHHhHHHhhccccccchHHhhcC--C-ceEEEecccee
Confidence 1110 00011111111 12222 23889999999999999999999975 4 56899999999
Q ss_pred CCCCcccchHHHHHHHH
Q 019600 310 GYGKMPEYEHIFTDFLL 326 (338)
Q Consensus 310 g~~gv~~~~~~l~~~l~ 326 (338)
-.++...|+...+..|-
T Consensus 324 FVKns~kYYDd~AkIL~ 340 (1018)
T KOG1057|consen 324 FVKNSNKYYDDCAKILG 340 (1018)
T ss_pred eeecchhhhHHHHHHHh
Confidence 99999998865555554
No 26
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.76 E-value=3.6e-17 Score=156.96 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=123.9
Q ss_pred eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCC-cEEEeeCCCCCCCcceeeEE
Q 019600 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSL 181 (338)
Q Consensus 103 ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~Gs~~sh~m~i 181 (338)
-.|+.+..-.|.||+.+.++|++. +||+|+|.++.+...+.. .+...--++ |+|+||+. || +++++.+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~a-------glpvP~T~~~~s~~~~~~-~l~~~~~~~~~VVVKPl~--Gs-~GrGI~~ 93 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAA-------GITVPELYGVIHNQAEVK-TIHNIVKDHPDFVIKPAQ--GS-GGKGILV 93 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHc-------CCCCCCEEEecCchhhHH-HHHHHHccCCCEEEEECC--CC-CccCeEE
Confidence 357778888999999999999864 899999988853332222 222221245 69999999 55 7899999
Q ss_pred EeChhhH--------------------------hccCCC--eEEEecccCC-----------CcEEEEEEECCEEEEEEE
Q 019600 182 AYDQYSL--------------------------KKLEPP--LVLQEFVNHG-----------GVLFKVYIVGEAIKVVRR 222 (338)
Q Consensus 182 v~~~~~L--------------------------~~l~~p--~vvQeFI~h~-----------g~~~KV~VIGd~v~~~~R 222 (338)
+.+.++. -.+..+ .++|||+.++ ..++||+|+|+++.++.+
T Consensus 94 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~ 173 (317)
T TIGR02291 94 ITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMM 173 (317)
T ss_pred EEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEE
Confidence 9765321 112222 5666776332 379999999999887744
Q ss_pred e-cCC--CCCcccccCCCce---eeecCcc--cccccCCCCCCCcc------ccCCCChHHHHHHHHHHHHHhCCcEeEE
Q 019600 223 F-SLP--DVTKQDLSTSAGV---FRFPRVS--CAAASADDADLDPC------VAELPPRPLLERLAKELRRQLGLRLFNL 288 (338)
Q Consensus 223 ~-Slp--~~~~~~~~~~~g~---~~~~~~s--~~~~~~~~~~~~~~------~~~~p~~~~~~~lA~~l~~~LGl~l~Gv 288 (338)
+ +.. +|.+|- . ..|. .+..+.. ..+.........|. ..+.|..+++.++|.++.+++|+.++|+
T Consensus 174 R~~~~~~~~~tN~-~-~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~Gv 251 (317)
T TIGR02291 174 RLPTRASDGKANL-H-QGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGV 251 (317)
T ss_pred EccCccCCccccc-c-cCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEE
Confidence 4 332 444431 0 0111 1111100 00000001111111 1234555678999999999999999999
Q ss_pred EEEEeCCCCCeEEEEeccCCCCCC
Q 019600 289 DIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 289 Dvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
|++++.+ + +++|+|||..|||+
T Consensus 252 Dii~~~~-~-g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 252 DMVLDKE-E-GPLVLELNARPGLA 273 (317)
T ss_pred EEEEeCC-C-CEEEEEeCCCCCCC
Confidence 9999753 3 58999999999998
No 27
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.74 E-value=5.3e-16 Score=166.55 Aligned_cols=265 Identities=14% Similarity=0.116 Sum_probs=173.2
Q ss_pred eEEEEEEe-cccccccccchH---HHhhhhhcceEEEEeeCCCCC----C---------------------c-CCCccEE
Q 019600 29 LVVVGYAL-TSKKTKSFLQPK---LEGLARNKGILFVAIDQNRPL----S---------------------D-QGPFDIV 78 (338)
Q Consensus 29 ~~~VGy~l-~~kK~~~~~~~~---l~~~~~~~gi~~~~id~~~~l----~---------------------~-qg~~Dvi 78 (338)
..+|+..+ -.+-.+..+..+ ..++.++.|+++++||.++.- . . ...+|++
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 530 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVV 530 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEE
Confidence 44555433 233445544333 566677789999999887620 0 0 0247888
Q ss_pred EEccCchhH-HHHHHHHHHhCCCceeeC-hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC--CChhHHH
Q 019600 79 LHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--SSIPDVV 154 (338)
Q Consensus 79 lhK~~~~~~-~~~l~~~~~~~p~v~ViD-p~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~--~~~~~~l 154 (338)
+.=+.+... -..+|.+.+. -|++.+- ++.+...++||..+-+.|++. ||++|++..+.... .+....+
T Consensus 531 f~~lhG~~gedg~iq~~le~-~gipy~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~~~~~~~~ 602 (809)
T PRK14573 531 LPILHGPFGEDGTMQGFLEI-IGKPYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWKREPELCL 602 (809)
T ss_pred EEcCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcccChHHHH
Confidence 766654211 1356666644 4677654 788899999999999999965 89999999885321 1111101
Q ss_pred --HhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecC
Q 019600 155 --LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSL 225 (338)
Q Consensus 155 --~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Sl 225 (338)
....++||+|+||..+ || |.|+.+|.++++|.+ .+.++++||||. +|+++.|.|+|+.-.... .+.
T Consensus 603 ~~~~~~lg~P~iVKP~~~-Gs--S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~~-~~~ 677 (809)
T PRK14573 603 AHIVEAFSFPMFVKTAHL-GS--SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAYV-IAG 677 (809)
T ss_pred HHHHHhcCCCEEEeeCCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCceE-ecc
Confidence 2346899999999995 44 579999999988765 367899999986 579999999998421100 011
Q ss_pred CCCCcccccCCCceeeecCcccc-ccc----CCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCe
Q 019600 226 PDVTKQDLSTSAGVFRFPRVSCA-AAS----ADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQ 299 (338)
Q Consensus 226 p~~~~~~~~~~~g~~~~~~~s~~-~~~----~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~ 299 (338)
+ .+.....++|+|...+.. +.. ..++.+++.. .+.++++|.++.++||+.-++ ||++++. +| .
T Consensus 678 ~----~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~riDf~v~~-~g-~ 746 (809)
T PRK14573 678 P----HERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKES-----QEQVLELAERIYRLLQGKGSCRIDFFLDE-EG-N 746 (809)
T ss_pred c----eEEccCCCeeCchhcccCCCCCceEEecCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEcC-CC-C
Confidence 1 111112356776554421 100 1123333222 457899999999999998776 9999975 35 6
Q ss_pred EEEEeccCCCCCCCcccc
Q 019600 300 FYVIDINYFPGYGKMPEY 317 (338)
Q Consensus 300 ~~ViDVN~fPg~~gv~~~ 317 (338)
+||+|||..||++...-+
T Consensus 747 ~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 747 FWLSEMNPIPGMTEASPF 764 (809)
T ss_pred EEEEEeeCCCCCCcccHH
Confidence 899999999999875443
No 28
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.72 E-value=5.5e-16 Score=152.11 Aligned_cols=230 Identities=14% Similarity=0.193 Sum_probs=148.3
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCc-----------------------CCCccEEEEccCchhHHHHHHHHHHhCCCce
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVT 102 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l~~-----------------------qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ 102 (338)
...++.+|+++|+.++.+|.+..-.. ...+|+|+.=... .....+..+.+ .|++
T Consensus 11 ~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~-v~~~~~~~l~~--~g~~ 87 (380)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEA-IATDALFELEK--EGYF 87 (380)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCc-cCHHHHHHHHh--cCCe
Confidence 34577788999999999888652111 0135555542211 11122333322 3677
Q ss_pred eeChHHHHHHhccHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEE
Q 019600 103 VLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (338)
Q Consensus 103 ViDp~~ai~~l~dR~~~~~~L-~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 181 (338)
+..++++++.+.||..+.+.+ .++ +|++|++..+.+ .+++.+. ...++||+|+||..+ + +|.++.+
T Consensus 88 ~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~VvKP~~g--~-~s~gv~~ 154 (380)
T TIGR01142 88 VVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREA--VEKIGYPCVVKPVMS--S-SGKGQSV 154 (380)
T ss_pred eCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHH--HHHcCCCEEEEECCC--c-CCCCeEE
Confidence 888999999999999988875 554 899999998853 2223322 246899999999864 3 5789999
Q ss_pred EeChhhHhcc-----------CCCeEEEecccCCCcEEEEEEE---CCEEEEEEEecCCCCCcccccCCCceeeecCccc
Q 019600 182 AYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIV---GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC 247 (338)
Q Consensus 182 v~~~~~L~~l-----------~~p~vvQeFI~h~g~~~KV~VI---Gd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~ 247 (338)
+.++++|... +.++++||||+ .+.++.|.++ ++.+... ....+.. ..+.+..+
T Consensus 155 v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~~~---- 221 (380)
T TIGR01142 155 VRGPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYHES---- 221 (380)
T ss_pred ECCHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeEEE----
Confidence 9999887642 35799999996 3678888877 3332221 1110100 01111100
Q ss_pred ccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCCCCCccc
Q 019600 248 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 316 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 316 (338)
..+..+++.. .+.++++|.++.++||. .++++|++.++ + .+||+|||.-||-.+...
T Consensus 222 ----~~p~~l~~~~-----~~~i~~~a~~~~~~l~~~G~~~ie~~~~~--~-~~~viEinpR~~~~~~~~ 279 (380)
T TIGR01142 222 ----WQPQEMSEKA-----LEEAQRIAKRITDALGGYGLFGVELFVKG--D-EVIFSEVSPRPHDTGMVT 279 (380)
T ss_pred ----ECCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEEC--C-cEEEEEeecCCCCCceEE
Confidence 0122222211 35678999999999998 66789999974 2 489999999999766544
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.72 E-value=1.2e-15 Score=148.72 Aligned_cols=231 Identities=19% Similarity=0.245 Sum_probs=148.8
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCCCcc-EEEEccCch-----------------hH--HHHHHHHHHhCCCceee
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGK-----------------EW--RQILEEYRQTHPEVTVL 104 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~D-vilhK~~~~-----------------~~--~~~l~~~~~~~p~v~Vi 104 (338)
....|..+|+++|++++.+|.+..-....-.| .++....+. +. ...+..+.+. |+++.
T Consensus 10 l~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~--g~~~~ 87 (352)
T TIGR01161 10 LGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEAR--GVKLF 87 (352)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhC--CCeEC
Confidence 33458889999999999999864111110011 111122221 11 1223333333 57788
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeC
Q 019600 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (338)
Q Consensus 105 Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (338)
.++++++.++||..+-+.|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+ |+ +|.++.++.+
T Consensus 88 p~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~~-g~-~g~Gv~~v~~ 155 (352)
T TIGR01161 88 PSPDALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAA--LQELGFPVVLKARTG-GY-DGRGQYRIRN 155 (352)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHH--HHHcCCCEEEEeCCC-CC-CCCCEEEECC
Confidence 9999999999999999999875 899999999853 2223222 235899999999874 33 5789999999
Q ss_pred hhhHhcc-----CCCeEEEecccCCCcEEEEEEEC---CEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCC
Q 019600 185 QYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVG---EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD 256 (338)
Q Consensus 185 ~~~L~~l-----~~p~vvQeFI~h~g~~~KV~VIG---d~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~ 256 (338)
.++|... +.++++||||+ .++.+.|.++. +++.+. |-. +.....|....+- .+..
T Consensus 156 ~~el~~a~~~~~~~~~lvEe~I~-~~~E~sv~~~~~~~G~~~~~-----~~~---~~~~~~g~~~~~~--------~p~~ 218 (352)
T TIGR01161 156 EADLPQAAKELGDRECIVEEFVP-FERELSVIVARSADGETAFY-----PVV---ENIHQDGILRYVV--------APAA 218 (352)
T ss_pred HHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEE-----CCc---ccEEeCCEEEEEE--------CCCC
Confidence 9888653 34899999996 46888888763 233221 110 0000112222110 1222
Q ss_pred CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 257 LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 257 ~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
+++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||=.|
T Consensus 219 ~~~~~-----~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg-~~~v~EinpR~~~sg 269 (352)
T TIGR01161 219 VPDAI-----QARAEEIARRLMEELGYVGVLAVEMFVLP-DG-RLLINELAPRVHNSG 269 (352)
T ss_pred CCHHH-----HHHHHHHHHHHHHHcCceeEEEEEEEEeC-CC-cEEEEEecCCCCCcC
Confidence 22211 356899999999999984 7789999975 35 689999999998443
No 30
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1.9e-15 Score=145.54 Aligned_cols=250 Identities=17% Similarity=0.176 Sum_probs=175.8
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc---C-------CCccEEEEccCchhH-HHHHHHHHHhCCCceeeChHHHHHHh
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSD---Q-------GPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDPPYAIQHL 113 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~---q-------g~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ViDp~~ai~~l 113 (338)
+-..+.++.+..|.+...+|......- . ..+|+++..+.+... -..+|.|.+..-==+|.-|..+-..+
T Consensus 22 sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~ 101 (317)
T COG1181 22 SAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGA 101 (317)
T ss_pred cHHHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhc
Confidence 345577777778999999998873321 2 578888877765311 12455555432112678899999999
Q ss_pred ccHHHHHHHHHhccccCCCCCccCCcEEEEecCC-CChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc--
Q 019600 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-- 190 (338)
Q Consensus 114 ~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~-~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-- 190 (338)
+||..+-.++... +++++.++.++.+. .+..-.-...+++||++|||... || |-++..+.+.+++..
T Consensus 102 mdk~~~K~~~~~~-------g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~ 171 (317)
T COG1181 102 MDKIVTKRLFKAE-------GLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSAL 171 (317)
T ss_pred ccHHHHHHHHHHC-------CCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHH
Confidence 9999988877754 89999999986542 22221123578999999999884 66 778889988877764
Q ss_pred -----cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCC-CceeeecCccccccc---CCCCCCCccc
Q 019600 191 -----LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS-AGVFRFPRVSCAAAS---ADDADLDPCV 261 (338)
Q Consensus 191 -----l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~-~g~~~~~~~s~~~~~---~~~~~~~~~~ 261 (338)
.+..+++|+|++ |+.+.|-++|+.. ... .+ ..+++... ..+|+|...+..+.. ..++.+++..
T Consensus 172 e~a~~~d~~vl~e~~~~--~rei~v~vl~~~~-~~~--~l---~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~ 243 (317)
T COG1181 172 ELAFKYDRDVLREQGIT--GREIEVGVLGNDY-EEQ--AL---PLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEI 243 (317)
T ss_pred HHHHHhCCceeeccCCC--cceEEEEecCCcc-cce--ec---CceEEecCCCeEEeeeccccCCCCceeeCCCCCCHHH
Confidence 388899999997 9999999999965 111 11 11233323 467888776543211 1222232222
Q ss_pred cCCCChHHHHHHHHHHHHHhC-CcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccch
Q 019600 262 AELPPRPLLERLAKELRRQLG-LRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 318 (338)
Q Consensus 262 ~~~p~~~~~~~lA~~l~~~LG-l~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~ 318 (338)
.+.++++|.++.++|| ..+.++|++.+..+| ++|++|||..|||..+--|+
T Consensus 244 -----~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g-~~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 244 -----HEEIKELALRAYKALGCLGLARVDFFVDDDEG-EFVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred -----HHHHHHHHHHHHHhcCCCceEEEEEEEECCCC-CEEEEEEeCCCCCcccccch
Confidence 4678999999999999 999999999987445 69999999999988776665
No 31
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.69 E-value=2.3e-15 Score=148.09 Aligned_cols=230 Identities=17% Similarity=0.181 Sum_probs=152.1
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCC---------------------CccEEEEccCchhHHHHHHHHHHhCCCcee
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSDQG---------------------PFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~qg---------------------~~DvilhK~~~~~~~~~l~~~~~~~p~v~V 103 (338)
....|..+|+++|+.++.+|++..-.-.. .+|+|..-.. .+-....++++++ ..+
T Consensus 13 l~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e--~i~~~~l~~l~~~--~~~ 88 (372)
T PRK06019 13 LGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFE--NVPAEALDALAAR--VPV 88 (372)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcC--CCCHHHHHHHhcC--Cee
Confidence 33457889999999999999864221110 2344321111 1111222334444 468
Q ss_pred eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEe
Q 019600 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (338)
Q Consensus 104 iDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 183 (338)
..+++++..+.||..+-+.|.++ +||+|++..+.+ .+++.+. ...++||+|+||..+ |+ +|+++.++.
T Consensus 89 ~p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~--~~~~g~P~vlKp~~~-g~-~g~Gv~~v~ 156 (372)
T PRK06019 89 PPGPDALAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAA--LADLGLPAVLKTRRG-GY-DGKGQWVIR 156 (372)
T ss_pred CcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHH--HHHcCCcEEEEeCCC-Cc-CCCCeEEEC
Confidence 89999999999999999999975 899999998852 2233332 235899999999873 34 688999999
Q ss_pred ChhhHhcc-----CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCC
Q 019600 184 DQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA 255 (338)
Q Consensus 184 ~~~~L~~l-----~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~ 255 (338)
+.++|... ..++++||||+ .++.+.|.++++ ++.+. +...+.. ..|.+.++. .++
T Consensus 157 ~~~el~~a~~~~~~~~~ivEe~I~-~~~E~sv~~~~~~~G~~~~~--p~~e~~~------~~gi~~~~~--------~pa 219 (372)
T PRK06019 157 SAEDLEAAWALLGSVPCILEEFVP-FEREVSVIVARGRDGEVVFY--PLVENVH------RNGILRTSI--------APA 219 (372)
T ss_pred CHHHHHHHHHhcCCCCEEEEecCC-CCeEEEEEEEECCCCCEEEe--CCcccEE------eCCEEEEEE--------CCC
Confidence 99988753 45899999997 478898887754 23221 1111111 123333211 122
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 256 DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 256 ~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
.+++.. .++++++|.++.++||+. ++++|++++. +| ++||+|||.-|+=.|.
T Consensus 220 ~~~~~~-----~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~~sg~ 272 (372)
T PRK06019 220 RISAEL-----QAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPHNSGH 272 (372)
T ss_pred CCCHHH-----HHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCccCccc
Confidence 222221 457899999999999975 6789999974 35 6999999999985543
No 32
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.66 E-value=1.7e-15 Score=132.49 Aligned_cols=164 Identities=20% Similarity=0.328 Sum_probs=100.1
Q ss_pred HhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc
Q 019600 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 191 (338)
Q Consensus 112 ~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l 191 (338)
+|.||..|.+++.++ +|++|++..+.+ .+++.+.. ..++||+|+||..+. +|.++.++.++++|.+.
T Consensus 1 ~~~dK~~~~~~~~~~-------gv~~P~~~~~~~-~~~~~~~~--~~~~~p~vvKp~~g~---gs~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKKA-------GVPVPKTRIVDS-EEELRAFA--EDLGFPFVVKPVDGS---GSRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHHH-------TS----EEEECS-HHHHHHHH--HHSSSSEEEEESS-S---TTTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHH--HHcCCCEEEEcCccc---cCCCEEEeCCHHHHHHH
Confidence 578999999999976 899999999853 22333322 346799999999954 46899999999998764
Q ss_pred -----------CCCeEEEecccCCCcEE--EEEEECCEEEEE-EEecCCCCCcccccCCCceeeecCcccccccCCCCCC
Q 019600 192 -----------EPPLVLQEFVNHGGVLF--KVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADL 257 (338)
Q Consensus 192 -----------~~p~vvQeFI~h~g~~~--KV~VIGd~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~ 257 (338)
..++++||||+ |.+| .+++.++++++. .......... ... ....... ....
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~--g~e~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~-~~~~~~~-----------~~~~ 132 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIP--GDEYSVDGVVDDGEVVFAGISRYVRQSPG-HFS-GGVPTGY-----------SVPS 132 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE-----SEEEEEEEEEETTEEEEEEEEEEEEEETC-CCS-SSEEEEE-----------EES-
T ss_pred HHHHHHhcccCCccEEEEEeee--eeeEEEEEEEEcceEEEEEEEEEeccccc-ccc-cceeeee-----------eccc
Confidence 35799999997 5665 556667776543 2221111000 000 0000000 0000
Q ss_pred CccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 258 DPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 258 ~~~~~~~p~~~~~~~lA~~l~~~LGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
+.+..+.+++++.++.+++|+ ..+++|++.+.+ | ++++||||.-||
T Consensus 133 -----~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 133 -----EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp ------CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred -----ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 111136789999999999998 888999999974 6 799999998776
No 33
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.65 E-value=2e-14 Score=158.36 Aligned_cols=228 Identities=16% Similarity=0.262 Sum_probs=149.4
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCCc------------------------CCCccEEEEccCchhHHHHHHHHHHhC
Q 019600 43 SFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (338)
Q Consensus 43 ~~~~~~l~~~~~~~gi~~~~id~~~~l~~------------------------qg~~DvilhK~~~~~~~~~l~~~~~~~ 98 (338)
++.+..++++++++|++++.+|.+-.... ....|.|+.-..++........+.+
T Consensus 574 dy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~~~~la~~le~-- 651 (1066)
T PRK05294 574 DYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPLKLAKALEA-- 651 (1066)
T ss_pred chhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchhHHHHHHHHHH--
Confidence 44556689999999999999997652211 0135667766655433333333333
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcce
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
-|++++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+ + +|.
T Consensus 652 ~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvvVKP~~~--~-Gg~ 718 (1066)
T PRK05294 652 AGVPILGTSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEV--AEEIGYPVLVRPSYV--L-GGR 718 (1066)
T ss_pred CCCceeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHH--HHhcCCCeEEEeCCC--C-CCC
Confidence 377776 6899999999999999999976 899999998852 2223332 246899999999774 3 678
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCc-EEEEEEE--CCEEEEE--EEe-cCCCCCcccccCCCceeee
Q 019600 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGV-LFKVYIV--GEAIKVV--RRF-SLPDVTKQDLSTSAGVFRF 242 (338)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~-~~KV~VI--Gd~v~~~--~R~-Slp~~~~~~~~~~~g~~~~ 242 (338)
+|.++.++++|..+ +.|+++||||. |. .+-|-++ |+.+.+. .++ .......++ ....+
T Consensus 719 Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~--G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd-----s~~~~ 791 (1066)
T PRK05294 719 AMEIVYDEEELERYMREAVKVSPDHPVLIDKFLE--GAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD-----SACSL 791 (1066)
T ss_pred cEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCC--CCEEEEEEEEecCCeEEEeeeEEeeeeccccCCC-----CcEEe
Confidence 99999999988652 46899999996 44 5554444 4434331 121 110111110 00000
Q ss_pred cCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 243 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 243 ~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.+..+++. ..+.++++|.++.++||+ .++++|+++++ + ++||||||.-|+
T Consensus 792 ----------p~~~l~~~-----~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~--~-~~yViEiNpR~s 842 (1066)
T PRK05294 792 ----------PPQTLSEE-----IIEEIREYTKKLALELNVVGLMNVQFAVKD--D-EVYVIEVNPRAS 842 (1066)
T ss_pred ----------cCCCCCHH-----HHHHHHHHHHHHHHHcCCeeeEEEEEEEEC--C-eEEEEEEecCCC
Confidence 01112111 135689999999999999 45669999974 3 699999999876
No 34
>PRK07206 hypothetical protein; Provisional
Probab=99.65 E-value=2.6e-14 Score=141.92 Aligned_cols=230 Identities=17% Similarity=0.184 Sum_probs=148.0
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCc----------------------------CCCccEEEEccCchhHHHHHHHHHHhC
Q 019600 47 PKLEGLARNKGILFVAIDQNRPLSD----------------------------QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l~~----------------------------qg~~DvilhK~~~~~~~~~l~~~~~~~ 98 (338)
..+.++++++|+.++.||.+..... .-.+|+|+. +.+.... +.+...++
T Consensus 15 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~--~~e~~~~-~~a~l~~~ 91 (416)
T PRK07206 15 KFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIA--GAESGVE-LADRLAEI 91 (416)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEE--CCCccHH-HHHHHHHh
Confidence 4578899999999998885531110 113466664 2222222 22333455
Q ss_pred CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCC---cEEEeeCCCCCCCc
Q 019600 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL---PLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~f---P~VvKp~~a~Gs~~ 175 (338)
-+.+.-++++++..++||+.|.+.|.++ +|++|++..+. +.+++.+.+ ..++| |+|+||..+. +
T Consensus 92 l~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~--~~~g~~~~P~VvKP~~g~---g 158 (416)
T PRK07206 92 LTPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWL--RENGLIDRPVVIKPLESA---G 158 (416)
T ss_pred cCCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHH--HhcCCCCCCEEEeCCCCC---C
Confidence 6766689999999999999999999975 89999999885 222333333 34566 9999998854 5
Q ss_pred ceeeEEEeChhhHhcc--------------CCCeEEEecccCCCcEEEEEEE--CCEEEE--EEEecCCCCCcccccCCC
Q 019600 176 SHELSLAYDQYSLKKL--------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKV--VRRFSLPDVTKQDLSTSA 237 (338)
Q Consensus 176 sh~m~iv~~~~~L~~l--------------~~p~vvQeFI~h~g~~~KV~VI--Gd~v~~--~~R~Slp~~~~~~~~~~~ 237 (338)
|.++.++.+.++|.+. +.++++||||. |..|-|-++ ++++.+ ..+..-..... ..
T Consensus 159 s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~~-----~~ 231 (416)
T PRK07206 159 SDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLNS-----GS 231 (416)
T ss_pred CCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccCC-----CC
Confidence 6799999999887542 24799999995 788866444 566543 23221111100 00
Q ss_pred ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEeccCCCCCCCcc
Q 019600 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 315 (338)
..+.+.. .. |. ..+..+.+.+++.++.++||+ ..+.+|+++++ .| +++||||.-||=...+
T Consensus 232 ~~~~~~~---------~~---p~--~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~g--~~liEin~R~~G~~~~ 294 (416)
T PRK07206 232 TVYDYDE---------FL---DY--SEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-DG--PRLIEIGARLDGGLHP 294 (416)
T ss_pred ceecccc---------cC---Cc--cHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-CC--CEEEEECCccCCCCcc
Confidence 1111100 00 00 011245688999999999998 46789999875 34 7899999999855555
Q ss_pred c
Q 019600 316 E 316 (338)
Q Consensus 316 ~ 316 (338)
.
T Consensus 295 ~ 295 (416)
T PRK07206 295 D 295 (416)
T ss_pred c
Confidence 4
No 35
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.63 E-value=3.5e-14 Score=146.97 Aligned_cols=243 Identities=15% Similarity=0.116 Sum_probs=158.5
Q ss_pred CceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCc--CC-------------------CccEEEEccCch
Q 019600 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD--QG-------------------PFDIVLHKLTGK 85 (338)
Q Consensus 27 ~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~--qg-------------------~~DvilhK~~~~ 85 (338)
..+.+||....- .....+..+|+++|++++.+|.+..-.. .. ..|+|..-...
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~- 93 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH- 93 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC-
Confidence 445678887776 4445688899999999999998752111 00 12333211100
Q ss_pred hHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEE
Q 019600 86 EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVA 165 (338)
Q Consensus 86 ~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~Vv 165 (338)
.....+..+.+. +++|..+++++..++||+.+-+.|.++ +|++|++..+.+ .+++.+. ...++||+|+
T Consensus 94 v~~~~l~~le~~--gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~~--~~~ig~P~Vv 161 (577)
T PLN02948 94 VDVDTLEALEKQ--GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEKA--GDLFGYPLML 161 (577)
T ss_pred CCHHHHHHHHhc--CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHHH--HHhcCCcEEE
Confidence 001233333322 566789999999999999999999875 899999998852 2223332 2468999999
Q ss_pred eeCCCCCCCcceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCcccccC
Q 019600 166 KPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLST 235 (338)
Q Consensus 166 Kp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~ 235 (338)
||..+ |+ +|.++.++.++++|... +.++++|+||+ ..+.+-|.|+++ .+.+. |.. +...
T Consensus 162 KP~~g-gs-~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v~r~~~G~i~~~-----p~~---E~~~ 230 (577)
T PLN02948 162 KSRRL-AY-DGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP-FVKELAVMVARSRDGSTRCY-----PVV---ETIH 230 (577)
T ss_pred EeCCC-CC-CCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEEEECCCCCEEEe-----cCc---ccEE
Confidence 99874 33 57899999999887642 46899999995 348899988853 23321 211 1000
Q ss_pred CCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 236 SAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 236 ~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
..+++.+. ..++.+++.. .++++++|.++.++||.. ++.+|++++. +| .+||+|||.-||..|
T Consensus 231 ~~~~~~~~--------~~Pa~l~~~~-----~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG-~v~v~EInpRpg~sG 294 (577)
T PLN02948 231 KDNICHVV--------EAPANVPWKV-----AKLATDVAEKAVGSLEGAGVFGVELFLLK-DG-QILLNEVAPRPHNSG 294 (577)
T ss_pred ECCeeEEE--------EECCCCCHHH-----HHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CC-cEEEEEEeCCCCCCC
Confidence 11222210 0123333222 467899999999999865 3469999975 35 689999999999655
No 36
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.63 E-value=3.5e-14 Score=136.33 Aligned_cols=168 Identities=22% Similarity=0.310 Sum_probs=117.7
Q ss_pred Cc-eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCccee
Q 019600 100 EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 100 ~v-~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
|+ ++.++++++..+.||..|.+.|.++ +|++|++..+.+ .+++.+.+....++||+|+||..+ + +|.+
T Consensus 95 g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g--~-~s~g 163 (326)
T PRK12767 95 GVKVLVSSKEVIEICNDKWLTYEFLKEN-------GIPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDG--S-ASIG 163 (326)
T ss_pred CcEEEeCCHHHHHHHhcHHHHHHHHHHc-------CCCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCC--C-CccC
Confidence 54 4689999999999999999999975 899999988742 222322212356899999999774 3 5788
Q ss_pred eEEEeChhhHhcc---CCCeEEEecccCCCcEEEEEEE---CCEEEE-EEEecCCCCCcccccCCCceeeecCccccccc
Q 019600 179 LSLAYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIV---GEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 251 (338)
Q Consensus 179 m~iv~~~~~L~~l---~~p~vvQeFI~h~g~~~KV~VI---Gd~v~~-~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~ 251 (338)
+.++.+.+++... ..++++|||| .|..+.+-++ ++++.+ ..+..+. ...+ +...
T Consensus 164 v~~v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~-~~~g------~~~~---------- 224 (326)
T PRK12767 164 VFKVNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIE-VRAG------ETSK---------- 224 (326)
T ss_pred eEEeCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeee-ecCC------ceeE----------
Confidence 9999999988753 4589999999 5777766544 444443 3333220 0000 0000
Q ss_pred CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 252 ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 252 ~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.. .. +.+.+.+++.++.++||+ .+++||+++++ | ++++||||.-++
T Consensus 225 --~~-------~~-~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 225 --GV-------TV-KDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred --EE-------Ec-CCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 00 01 135689999999999999 47789999985 4 699999997544
No 37
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.62 E-value=5.7e-14 Score=154.44 Aligned_cols=229 Identities=14% Similarity=0.264 Sum_probs=148.9
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCCc------------------------CCCccEEEEccCchhHHHHHHHHHHhC
Q 019600 43 SFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (338)
Q Consensus 43 ~~~~~~l~~~~~~~gi~~~~id~~~~l~~------------------------qg~~DvilhK~~~~~~~~~l~~~~~~~ 98 (338)
++.+-.++++++++|++++.+|.+-.... ....|.|+.-..++... .+....++
T Consensus 574 d~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~~~-~la~~le~- 651 (1050)
T TIGR01369 574 DYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTPL-NLAKALEE- 651 (1050)
T ss_pred chHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHhHH-HHHHHHHH-
Confidence 34555689999999999999988642211 11345555444443221 22222222
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcce
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
.|++++ ++++++..+.||..+.++|.++ +|++|++..+. +.+++.+. ...++||+|+||..+. +|.
T Consensus 652 ~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~-s~ee~~~~--~~~igyPvIVKP~~~~---Gg~ 718 (1050)
T TIGR01369 652 AGVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTAT-SVEEAVEF--ASEIGYPVLVRPSYVL---GGR 718 (1050)
T ss_pred CCCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEEC-CHHHHHHH--HHhcCCCEEEEECCCC---CCC
Confidence 377765 7899999999999999999976 89999999885 33233332 2468999999998753 568
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEE--EEECCEEEEE--EEecC-CCCCcccccCCCceeeec
Q 019600 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKV--YIVGEAIKVV--RRFSL-PDVTKQDLSTSAGVFRFP 243 (338)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV--~VIGd~v~~~--~R~Sl-p~~~~~~~~~~~g~~~~~ 243 (338)
+|.+++|+++|..+ +.|+++||||+ +|..+-| ++-|+++.+. ...-. .....++ ....+
T Consensus 719 gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~-~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sGd-----s~~~~- 791 (1050)
T TIGR01369 719 AMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLE-DAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGD-----STCVL- 791 (1050)
T ss_pred CeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCC-CCeEEEEEEEEeCCEEEEEEEEEeecccCCcCCC-----ceEEe-
Confidence 99999999998652 46899999996 3666655 5556666543 22110 1111100 00000
Q ss_pred CcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 244 RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 244 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
....+++.. .+.++++|.++.++||+. +++||+++++ | .+||||||.-++
T Consensus 792 ---------P~~~l~~~~-----~~~i~~~a~ki~~aLgi~G~~~vqf~~~~--~-~~yvIEvNpR~s 842 (1050)
T TIGR01369 792 ---------PPQTLSAEI-----VDRIKDIVRKIAKELNVKGLMNIQFAVKD--G-EVYVIEVNPRAS 842 (1050)
T ss_pred ---------cCCCCCHHH-----HHHHHHHHHHHHHHCCCcceEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 011111111 356899999999999975 3459999974 3 699999999886
No 38
>PRK06849 hypothetical protein; Provisional
Probab=99.62 E-value=7.1e-14 Score=138.02 Aligned_cols=167 Identities=19% Similarity=0.325 Sum_probs=115.1
Q ss_pred eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEE
Q 019600 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (338)
Q Consensus 102 ~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 181 (338)
+...++++++.++||..+.+.++++ ||++|++..+++ .+++.+ +.....+||+|+||..++ +++++.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l~~-~~~~~~~~P~vlKP~~~~---~~~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAIRN-FMFKTPHTPYVLKPIYSR---FVRRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHH-HhhcCCCCcEEEEeCccc---CCCeEEE
Confidence 4568899999999999999999976 899999999852 222322 122223899999999865 4567888
Q ss_pred EeChhhHhcc----CCCeEEEecccCCCcEE--EEEEECCEEEEE-EEecCCCCCcccccCCCceeeecCcccccccCCC
Q 019600 182 AYDQYSLKKL----EPPLVLQEFVNHGGVLF--KVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADD 254 (338)
Q Consensus 182 v~~~~~L~~l----~~p~vvQeFI~h~g~~~--KV~VIGd~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~ 254 (338)
+.+++.+..+ ..|+++||||+ |..+ -.++.++++.+. .+. +....+ .|. .
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~--G~e~~~~~~~~~G~v~~~~~~~--~~~~~~-----~~~--------------~ 227 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQ--GKEYCSYSIVRSGELRAHSCYK--PEYCAG-----SGA--------------Q 227 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEec--CCeEEEEEEEECCEEEEEEEee--ccccCC-----CCc--------------e
Confidence 8888777765 35899999996 6665 445556776543 221 111100 000 0
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 255 ADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
....+ . ..+.+++++.++.++||++ .++||++.+. +| ++|+||||.=++
T Consensus 228 ~~~~~----~-~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g-~~~~iEiNpR~~ 277 (389)
T PRK06849 228 IAFQP----I-NHPRIEEFVTHFVKELNYTGQISFDFIETE-NG-DAYPIECNPRTT 277 (389)
T ss_pred eEeEE----C-CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CC-CEEEEEecCCCC
Confidence 00000 0 1356899999999999988 6779999874 56 699999997766
No 39
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.61 E-value=6.2e-14 Score=138.25 Aligned_cols=231 Identities=16% Similarity=0.221 Sum_probs=147.8
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc-----------------------CCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~-----------------------qg~~DvilhK~~~~~~~~~l~~~~~~~p~v 101 (338)
....++.+++++|++++.+|.+..-.. ...+|+|+.-..+ .....+.... ++ |+
T Consensus 23 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~-~~~~~~~~l~-~~-g~ 99 (395)
T PRK09288 23 LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEA-IATDALVELE-KE-GF 99 (395)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCc-CCHHHHHHHH-hc-CC
Confidence 344577788999999999887642110 1146666643322 1122233333 33 77
Q ss_pred eeeChHHHHHHhccHHHHHHHHH-hccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeE
Q 019600 102 TVLDPPYAIQHLHNRQSMLQCVA-DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (338)
Q Consensus 102 ~ViDp~~ai~~l~dR~~~~~~L~-~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (338)
++..++++++.++||..+-+.+. ++ +||+|++..+++ .+++.+. ...++||+|+||.. |+ +|.++.
T Consensus 100 ~~~~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~--~~~~g~P~VvKP~~--g~-~s~Gv~ 166 (395)
T PRK09288 100 NVVPTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAA--VEEIGYPCVVKPVM--SS-SGKGQS 166 (395)
T ss_pred eeCCCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHH--HHhcCCCEEEEeCC--Cc-CCCCeE
Confidence 77788999999999999988884 44 899999998853 2233332 24589999999986 33 578999
Q ss_pred EEeChhhHhcc-----------CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCcccccCCCceeeecCcc
Q 019600 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVS 246 (338)
Q Consensus 181 iv~~~~~L~~l-----------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s 246 (338)
++.+.++|.+. +.++++||||+ .+..+.|.++.+ ..... ....++. ..|.+.. +
T Consensus 167 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv~~~~~~~~~~~~~--~~~~~~~------~~~~~~~---~ 234 (395)
T PRK09288 167 VVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITLLTVRAVDGGTHFC--APIGHRQ------EDGDYRE---S 234 (395)
T ss_pred EECCHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcccEE------ECCEEEE---E
Confidence 99999887642 25899999996 477888887743 12211 1111110 0111110 0
Q ss_pred cccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCCCCCccc
Q 019600 247 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 316 (338)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 316 (338)
..+..+++.. .++++++|.++.++||. ..+.+|++++++ ++||||||.-||-.+...
T Consensus 235 -----~~p~~l~~~~-----~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~~~~~ 292 (395)
T PRK09288 235 -----WQPQPMSPAA-----LEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDTGMVT 292 (395)
T ss_pred -----ECCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCCccee
Confidence 0122222211 34578899999999985 345699999652 589999999998665443
No 40
>PRK08462 biotin carboxylase; Validated
Probab=99.59 E-value=5.6e-14 Score=141.18 Aligned_cols=230 Identities=15% Similarity=0.166 Sum_probs=143.2
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCC--C--c----------------------------CCCccEEEEccCc-hhHHH
Q 019600 43 SFLQPKLEGLARNKGILFVAIDQNRPL--S--D----------------------------QGPFDIVLHKLTG-KEWRQ 89 (338)
Q Consensus 43 ~~~~~~l~~~~~~~gi~~~~id~~~~l--~--~----------------------------qg~~DvilhK~~~-~~~~~ 89 (338)
..+.-+++++|+++|+..+.++-...- . . ...+|+|+.=... .+. .
T Consensus 13 g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~-~ 91 (445)
T PRK08462 13 GEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSEN-Q 91 (445)
T ss_pred cHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccC-H
Confidence 345667899999999999888432211 0 0 0134444433211 000 1
Q ss_pred HHHHHHHhCCCcee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEe
Q 019600 90 ILEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAK 166 (338)
Q Consensus 90 ~l~~~~~~~p~v~V-iDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvK 166 (338)
.+.+.. +.-|+++ -.++++++.+.||..|.+.|.++ +|++|++. .+. +.+++.+. ...++||+|+|
T Consensus 92 ~~a~~~-e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~-------gIp~pp~~~~~~~-~~~~~~~~--~~~~g~PvvvK 160 (445)
T PRK08462 92 NFVEIC-SHHNIKFIGPSVEVMALMSDKSKAKEVMKRA-------GVPVIPGSDGALK-SYEEAKKI--AKEIGYPVILK 160 (445)
T ss_pred HHHHHH-HHCCCeEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEE
Confidence 222222 2347754 58889999999999999999875 89998864 232 22222222 24589999999
Q ss_pred eCCCCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEE-EEe-cCCCC
Q 019600 167 PLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDV 228 (338)
Q Consensus 167 p~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~~-~R~-Slp~~ 228 (338)
|..++ +|++|.++.++++|.+. +.++++||||+ +++.+.|.++|+. ++.. .|. +...
T Consensus 161 P~~g~---gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~- 235 (445)
T PRK08462 161 AAAGG---GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQR- 235 (445)
T ss_pred eCCCC---CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCC-CCeEEEEEEEECCCCCEEEEEecccccee-
Confidence 98843 57899999999988642 34699999996 4677888888652 2222 111 1100
Q ss_pred CcccccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEecc
Q 019600 229 TKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDIN 306 (338)
Q Consensus 229 ~~~~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN 306 (338)
....+ + . ..+. .+++.. .+.+.++|.++.++||+.-++ ||++++.+ | .+||+|||
T Consensus 236 -------~~~~~-~---~-----~~p~~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiN 292 (445)
T PRK08462 236 -------RHQKL-I---E-----ESPAVVLDEKT-----RERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMN 292 (445)
T ss_pred -------cccce-E---E-----EcCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEE
Confidence 00000 0 0 0011 121111 356889999999999998655 99999853 3 58999999
Q ss_pred CCCCCC
Q 019600 307 YFPGYG 312 (338)
Q Consensus 307 ~fPg~~ 312 (338)
.-+|-.
T Consensus 293 pR~~~~ 298 (445)
T PRK08462 293 TRLQVE 298 (445)
T ss_pred CCcCcC
Confidence 988753
No 41
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.57 E-value=2e-13 Score=138.21 Aligned_cols=177 Identities=20% Similarity=0.256 Sum_probs=120.3
Q ss_pred Cce-eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcc
Q 019600 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (338)
Q Consensus 100 ~v~-ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (338)
|++ +-.++++++.+.||..+.+.+.++ +||+|++. .+. +.+++.+. ...++||+|+||..++ +|
T Consensus 102 gi~~igps~~ai~~~~DK~~~r~~l~~~-------GIp~~p~~~~~v~-~~~e~~~~--~~~igyPvvvKp~~gg---gg 168 (467)
T PRK12833 102 GLIFVGPDAQTIRTMGDKARARRTARRA-------GVPTVPGSDGVVA-SLDAALEV--AARIGYPLMIKAAAGG---GG 168 (467)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcCcCcC-CHHHHHHH--HHHhCCCEEEEECCCC---CC
Confidence 554 456789999999999999999975 89998875 443 22222222 2458999999998843 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE--EEE-EEEe-cCCCCCcccccCCCce
Q 019600 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA--IKV-VRRF-SLPDVTKQDLSTSAGV 239 (338)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~--v~~-~~R~-Slp~~~~~~~~~~~g~ 239 (338)
.+|.++.++++|.+. +.++++|+||+. |+.+-|-|+||. ++. ..|. +... .....
T Consensus 169 ~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r-------~~~ki 240 (467)
T PRK12833 169 RGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQR-------RRQKI 240 (467)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeeccccc-------CCccE
Confidence 899999999888641 457999999974 799999889873 232 2332 1100 00000
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 240 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 240 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
+.. +....+++.. .+.+.++|.++.++||+.-.+ +|++.+..+| .+|+||||.-++..
T Consensus 241 ~e~---------~p~~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~~~ 299 (467)
T PRK12833 241 LEE---------APSPSLTPAQ-----RDALCASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQVE 299 (467)
T ss_pred EEE---------CCCCCCCHHH-----HHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCCcc
Confidence 100 0011121111 356899999999999998655 9999975445 68999999888743
No 42
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.57 E-value=1.7e-13 Score=135.31 Aligned_cols=236 Identities=15% Similarity=0.174 Sum_probs=140.6
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHh
Q 019600 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~ 125 (338)
.++.++|++.+++++.+.++.++. ..+.+..++ -|++++ .++++++.+.||..+-+.|++
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l~------------------~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPLI------------------DGLADILRA-NGFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHHH------------------HHHHHHHHh-CCCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 558889999998888877665321 222233322 477777 555999999999999999997
Q ss_pred ccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc---------CCCeE
Q 019600 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLV 196 (338)
Q Consensus 126 ~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~v 196 (338)
+ +||+|++..+. +.+++.+.+ ..++||+|+||.. |+ +|.++.++.+.+++.+. ..+++
T Consensus 78 ~-------gIptp~~~~~~-~~~ea~~~~--~~~g~PvVvKp~~--~~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~vl 144 (379)
T PRK13790 78 Y-------NIPTADYKEVE-RKKDALTYI--ENCELPVVVKKDG--LA-AGKGVIIADTIEAARSAIEIMYGDEEEGTVV 144 (379)
T ss_pred C-------CCCCCCEEEEC-CHHHHHHHH--HhcCCCEEEEeCC--CC-CCCCEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 5 89999998875 222233322 3589999999975 33 57899999999887541 34799
Q ss_pred EEecccCCCcEEEEEEE--CCEEEE---EEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 019600 197 LQEFVNHGGVLFKVYIV--GEAIKV---VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 271 (338)
Q Consensus 197 vQeFI~h~g~~~KV~VI--Gd~v~~---~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~ 271 (338)
+||||. |..+-|.++ |+.++. ..+.....+ .+++..+ .... +.......+++.. .....+
T Consensus 145 vEe~i~--G~E~sv~~~~~g~~~~~~~~~~~~~kr~~-~~d~g~~-------tgg~-~~~~p~~~l~~~~----~~~~~~ 209 (379)
T PRK13790 145 FETFLE--GEEFSLMTFVNGDLAVPFDCIAQDHKRAF-DHDEGPN-------TGGM-GAYCPVPHISDDV----LKLTNE 209 (379)
T ss_pred EEEccc--CceEEEEEEeeCCEEEecccccccccccc-cCCCCCc-------CCCC-ceEeeCCCCCHHH----HHHHHH
Confidence 999995 778876665 443221 111100000 0010000 0000 0000000111110 011227
Q ss_pred HHHHHHHHHh---CCcEeE---EEEEEeCCCCCeEEEEeccCCCCCCCccc----chHHHHHHHHHHHHhh
Q 019600 272 RLAKELRRQL---GLRLFN---LDIIREHGTRDQFYVIDINYFPGYGKMPE----YEHIFTDFLLSLTQSR 332 (338)
Q Consensus 272 ~lA~~l~~~L---Gl~l~G---vDvi~~~~~g~~~~ViDVN~fPg~~gv~~----~~~~l~~~l~~~i~~~ 332 (338)
+++.++.++| |+.++| +|+++++ +| ++|+|+|.-||--.... +...+.+.+.+....+
T Consensus 210 ~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g--~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~ 277 (379)
T PRK13790 210 TIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG--PKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGK 277 (379)
T ss_pred HHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCC
Confidence 8888888888 667666 5999864 34 89999999887422211 1123455555555443
No 43
>PRK05586 biotin carboxylase; Validated
Probab=99.57 E-value=1.7e-13 Score=137.87 Aligned_cols=179 Identities=12% Similarity=0.192 Sum_probs=119.2
Q ss_pred CCce-eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCc
Q 019600 99 PEVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~-ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
-|++ +--+++++..++||..+.+.+.++ +|++|++. .+. +.+++.+. ...++||+|+||..+ + +
T Consensus 98 ~gi~~~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~~--~~~igyPvvvKP~~g--g-g 164 (447)
T PRK05586 98 CNIVFIGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALEI--AKEIGYPVMVKASAG--G-G 164 (447)
T ss_pred CCCcEECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCC--C-C
Confidence 3654 568899999999999999999875 89999874 333 22222222 246899999999884 3 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEEEEecCCCCCcccccCCCce
Q 019600 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGV 239 (338)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~~~R~Slp~~~~~~~~~~~g~ 239 (338)
|+++.++.++++|.+. +.++++||||+ +++.+.|.|+++. +.....+... +
T Consensus 165 g~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~------~------ 231 (447)
T PRK05586 165 GRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCS------L------ 231 (447)
T ss_pred CCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC-CCeEEEEEEEECCCCCEEEEeceecc------e------
Confidence 7899999999987542 35799999996 3478999888752 3322111000 0
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 240 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 240 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
...+ .... ..+....+++.. .+.+.++|.++.++||+.-.+ +|++++. +| ++||+|||.-||..
T Consensus 232 ~~~~-~~~~-~~~p~~~l~~~~-----~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~~~ 296 (447)
T PRK05586 232 QRRN-QKVL-EEAPSPVMTEEL-----RKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQVE 296 (447)
T ss_pred Eecc-cceE-EEcCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCCCC
Confidence 0000 0000 000000111111 346889999999999998876 9999985 35 69999999988654
No 44
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.55 E-value=3.7e-13 Score=135.49 Aligned_cols=230 Identities=12% Similarity=0.179 Sum_probs=143.0
Q ss_pred ccchHHHhhhhhcceEEEEeeCCC--C--C---Cc-------------------------CCCccEEEEccC--chhHHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNR--P--L---SD-------------------------QGPFDIVLHKLT--GKEWRQ 89 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~--~--l---~~-------------------------qg~~DvilhK~~--~~~~~~ 89 (338)
.+..+++++|+++|++++.+|.+. . - .+ ...+|+|+.-.. .+.. .
T Consensus 12 ~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~-~ 90 (449)
T TIGR00514 12 EIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENA-N 90 (449)
T ss_pred HHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCH-H
Confidence 445678999999999999997631 1 1 11 013555554331 1111 1
Q ss_pred HHHHHHHhCCCcee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEe
Q 019600 90 ILEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAK 166 (338)
Q Consensus 90 ~l~~~~~~~p~v~V-iDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvK 166 (338)
+.+..++ -|+++ -.++++++.++||..+.+.|.++ +|++|++. .+. +.+++.+. ...++||+|+|
T Consensus 91 -~a~~~e~-~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gip~pp~~~~~~~-~~~e~~~~--~~~ig~PvvvK 158 (449)
T TIGR00514 91 -FAEQCER-SGFTFIGPSAESIRLMGDKVSAIETMKKA-------GVPCVPGSDGLVE-DEEENVRI--AKRIGYPVIIK 158 (449)
T ss_pred -HHHHHHH-CCCcEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCcC-CHHHHHHH--HHHhCCCEEEE
Confidence 2222222 46764 47899999999999999999975 89998764 332 22222222 24689999999
Q ss_pred eCCCCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCc
Q 019600 167 PLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTK 230 (338)
Q Consensus 167 p~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~ 230 (338)
|..++ +|.++.++.+.++|... ..++++||||. +++.+-|-|+++ ++...... +..
T Consensus 159 P~~g~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~---~~~- 230 (449)
T TIGR00514 159 ATAGG---GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE-NPRHVEIQVLADKYGNAIYLGER---DCS- 230 (449)
T ss_pred eCCCC---CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC-CCeEEEEEEEEcCCCCEEEEecc---ccC-
Confidence 98854 57899999999887642 35799999996 467788877764 23322110 000
Q ss_pred ccccCCC-ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCC
Q 019600 231 QDLSTSA-GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 308 (338)
Q Consensus 231 ~~~~~~~-g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~f 308 (338)
+.... ..+.+ +....+++.. .+.++++|.++.++||+.-.+ +|++++. +| .+||+|||.-
T Consensus 231 --~~~~~~~~~~~---------~p~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR 292 (449)
T TIGR00514 231 --IQRRHQKLLEE---------APSPALTPEL-----RRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTR 292 (449)
T ss_pred --ceecccceEEE---------CCCCCCCHHH-----HHHHHHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECC
Confidence 00000 00000 0001121111 356889999999999997554 9999974 34 5899999988
Q ss_pred CCCC
Q 019600 309 PGYG 312 (338)
Q Consensus 309 Pg~~ 312 (338)
+|..
T Consensus 293 ~~~~ 296 (449)
T TIGR00514 293 IQVE 296 (449)
T ss_pred CCCC
Confidence 8643
No 45
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.54 E-value=9.5e-13 Score=133.70 Aligned_cols=230 Identities=12% Similarity=0.125 Sum_probs=143.2
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCC-------Cc------------------------CCCccEEEEccCc-hhHHHHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPL-------SD------------------------QGPFDIVLHKLTG-KEWRQIL 91 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l-------~~------------------------qg~~DvilhK~~~-~~~~~~l 91 (338)
.+..+++++|+++|++++.++.+..- .+ ...+|+|+.=.+. .+.. .+
T Consensus 12 e~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~-~~ 90 (478)
T PRK08463 12 EIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSENY-EF 90 (478)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCccccCH-HH
Confidence 34567889999999998888764211 00 0124555442111 0111 12
Q ss_pred HHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcE-EEEe-cCCCChhHHHHhcCCCCcEEEeeC
Q 019600 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ-LVIE-RDASSIPDVVLKAGLTLPLVAKPL 168 (338)
Q Consensus 92 ~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~-~~~~-~~~~~~~~~l~~~~l~fP~VvKp~ 168 (338)
.+..++ -|++++ .++++++.+.||..+.+.+.++ +||+|++ .... .+.+++.+. ...++||+|+||.
T Consensus 91 a~~~e~-~Gi~~iGps~~~i~~~~DK~~~k~~l~~~-------gIpvpp~~~~~~~~~~~~~~~~--~~~igyPvvvKP~ 160 (478)
T PRK08463 91 AKAVED-AGIIFIGPKSEVIRKMGNKNIARYLMKKN-------GIPIVPGTEKLNSESMEEIKIF--ARKIGYPVILKAS 160 (478)
T ss_pred HHHHHH-CCCceecCCHHHHHhhCcHHHHHHHHHHc-------CCCCCCCccccCCCCHHHHHHH--HHHhCCCEEEEeC
Confidence 222222 477766 6689999999999999999975 8999774 3332 122222222 2468999999998
Q ss_pred CCCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCCc
Q 019600 169 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTK 230 (338)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~-~~~R~-Slp~~~~ 230 (338)
.++ +|.+|.++.++++|... +.++++|+||+ +++.+-+-|+|+. +. ...|. +..
T Consensus 161 ~gg---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~~---- 232 (478)
T PRK08463 161 GGG---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSIQ---- 232 (478)
T ss_pred CCC---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCccc----
Confidence 853 57899999999987542 35799999997 3677777777653 32 22222 110
Q ss_pred ccccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCC
Q 019600 231 QDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 308 (338)
Q Consensus 231 ~~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~f 308 (338)
.. ++.. ...+ +. .+++.. .+.++++|.++.++||+.-+| +|++++. +| ++||+|||.-
T Consensus 233 ----~~------~~~~--ie~~-P~~~l~~~~-----~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R 292 (478)
T PRK08463 233 ----RR------HQKV--IEIA-PCPSISDNL-----RKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTR 292 (478)
T ss_pred ----cc------cCce--EEEC-CCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECC
Confidence 00 0000 0000 11 122211 346788999999999998777 9999975 34 6999999988
Q ss_pred CCCC
Q 019600 309 PGYG 312 (338)
Q Consensus 309 Pg~~ 312 (338)
++..
T Consensus 293 ~~~~ 296 (478)
T PRK08463 293 IQVE 296 (478)
T ss_pred cCCC
Confidence 8755
No 46
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.54 E-value=5.3e-13 Score=144.72 Aligned_cols=229 Identities=17% Similarity=0.147 Sum_probs=142.8
Q ss_pred HHHhhhhhcceEEEEeeCCCCCCc--CCCccEE-EEccCch--------------------hHHHHHHHHHHhCCCceee
Q 019600 48 KLEGLARNKGILFVAIDQNRPLSD--QGPFDIV-LHKLTGK--------------------EWRQILEEYRQTHPEVTVL 104 (338)
Q Consensus 48 ~l~~~~~~~gi~~~~id~~~~l~~--qg~~Dvi-lhK~~~~--------------------~~~~~l~~~~~~~p~v~Vi 104 (338)
.|+.+|+++|+.++.++.+..... +.-.|.. .+-.++. +..-.+...+.++-|++-
T Consensus 18 ~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~se~~v~~aa~lae~lglpg- 96 (887)
T PRK02186 18 LLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEYFIEVASEVARRLGLPA- 96 (887)
T ss_pred HHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeCchhhHHHHHHHHHHhCcCC-
Confidence 478899999999999886542111 1011211 1221111 111122223334446654
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeC
Q 019600 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (338)
Q Consensus 105 Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (338)
++++++..++||..|-+.|.++ +|++|++..+.+ .++..+. ...++||+|+||..+. +|.++.++.+
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~-~~e~~~~--~~~~~~PvVVKP~~g~---gS~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALAL-RAVALDA--LDGLTYPVVVKPRMGS---GSVGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHHH--HHhCCCCEEEEeCCCC---CCCCeEEECC
Confidence 5689999999999999999975 899999998853 2223332 2468999999998854 5678999999
Q ss_pred hhhHhcc--------CCCeEEEecccCCCcEEEEEEE--CCEEE--EEEEecCCCCCcccccCCCceeeecCcccccccC
Q 019600 185 QYSLKKL--------EPPLVLQEFVNHGGVLFKVYIV--GEAIK--VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA 252 (338)
Q Consensus 185 ~~~L~~l--------~~p~vvQeFI~h~g~~~KV~VI--Gd~v~--~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~ 252 (338)
.++|.+. ..++++||||+ |..|-|-++ ++.+. .+.++.... . ..|- .... .
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~--------~-~~~v-e~g~-----~ 226 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKHLGP--------P-PHFV-EIGH-----D 226 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEEEECCcEEEEEEEeeecCC--------C-CCeE-Eecc-----c
Confidence 9887642 56899999995 777766444 44332 334443210 0 0010 0000 0
Q ss_pred CCCCCCccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEeccCCCCCCCcc
Q 019600 253 DDADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 253 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 315 (338)
.+..+++. ..+.+.+++.++.++||+ ..+++|+++++ + +++|||||.-+|-..++
T Consensus 227 ~P~~l~~~-----~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~-~--g~~liEIn~R~~G~~i~ 283 (887)
T PRK02186 227 FPAPLSAP-----QRERIVRTVLRALDAVGYAFGPAHTELRVRG-D--TVVIIEINPRLAGGMIP 283 (887)
T ss_pred cCCCCCHH-----HHHHHHHHHHHHHHHcCCCcCceEEEEEEEC-C--CEEEEEECCCCCCccHH
Confidence 11222111 135688999999999999 56789999974 2 48999999977644333
No 47
>PLN02735 carbamoyl-phosphate synthase
Probab=99.54 E-value=7.8e-13 Score=145.74 Aligned_cols=229 Identities=14% Similarity=0.232 Sum_probs=150.9
Q ss_pred HHHhhhhhcceEEEEeeCCCCCCc------------------------CCCccEEEEccCchh---HHHHHHHHHHhCC-
Q 019600 48 KLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKE---WRQILEEYRQTHP- 99 (338)
Q Consensus 48 ~l~~~~~~~gi~~~~id~~~~l~~------------------------qg~~DvilhK~~~~~---~~~~l~~~~~~~p- 99 (338)
..+.+++++|++.+.+|-+-.... ....|+|+.=..++. ....+.++..+++
T Consensus 599 ~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~ 678 (1102)
T PLN02735 599 HASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPP 678 (1102)
T ss_pred HHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccc
Confidence 477899999999999987653321 113577776555432 2344555544433
Q ss_pred -------Cc-eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCC
Q 019600 100 -------EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD 171 (338)
Q Consensus 100 -------~v-~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~ 171 (338)
|+ ++-.+++++..+.||..+-+.|.++ +||+|++..+.+ .+++.+. ...++||+|+||..+.
T Consensus 679 fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s-~eea~~~--a~~iGyPvvVKP~~g~ 748 (1102)
T PLN02735 679 PSASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARS-EADALAI--AKRIGYPVVVRPSYVL 748 (1102)
T ss_pred hhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCC-HHHHHHH--HHhcCCCeEEEeCCCC
Confidence 43 4568899999999999999999976 899999988752 2223222 3468999999998843
Q ss_pred CCCcceeeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCCcccccCCCc
Q 019600 172 GSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAG 238 (338)
Q Consensus 172 Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~-~R~Slp~~~~~~~~~~~g 238 (338)
+|.+|.+|++.++|..+ +.|+++|+||. +|+.+-|-+++| .+.+. .+.-... .|
T Consensus 749 ---gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~~---------~g 815 (1102)
T PLN02735 749 ---GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-DATEIDVDALADSEGNVVIGGIMEHIEQ---------AG 815 (1102)
T ss_pred ---CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-CcEEEEEEEEECCCCCEEEecceEeeec---------cC
Confidence 46799999999998752 35899999996 489999999975 23321 1111100 00
Q ss_pred eeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEeccCCCC
Q 019600 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~-GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.....+.. ......+++.. .+.++++|.+++++||+.-+ .+|++++. +| ++||+|||.-||
T Consensus 816 vhsGds~~----~~P~~~L~~e~-----~~~i~~~a~ki~~~L~~~G~~~vqf~v~~-dg-~~yviEiNpR~s 877 (1102)
T PLN02735 816 VHSGDSAC----SLPTQTIPSSC-----LATIRDWTTKLAKRLNVCGLMNCQYAITP-SG-EVYIIEANPRAS 877 (1102)
T ss_pred ccCCCccE----EecCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeeEEEEEcC-CC-cEEEEEEeCCCC
Confidence 00000000 00001122111 35678899999999998655 59999964 24 699999999998
No 48
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.54 E-value=1.1e-12 Score=144.52 Aligned_cols=227 Identities=16% Similarity=0.284 Sum_probs=146.8
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCc------------------------CCCccEEEEccCchhHHHHHHHHHHhCC
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKEWRQILEEYRQTHP 99 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~~------------------------qg~~DvilhK~~~~~~~~~l~~~~~~~p 99 (338)
+.+-..++++++.|++++.+|.+-.... ...+|.|+.-..+... ..+..-.+ ..
T Consensus 576 y~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~~~-~~la~~le-~~ 653 (1068)
T PRK12815 576 YSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQTA-INLAKGLE-EA 653 (1068)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcHHH-HHHHHHHH-HC
Confidence 3344467899999999999988742110 1135555554433211 12222222 24
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCccee
Q 019600 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 100 ~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
|+.++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+. ++.+
T Consensus 654 Gi~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvVVKP~~~~---Gg~g 720 (1068)
T PRK12815 654 GLTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFAF--AKRIGYPVLIRPSYVI---GGQG 720 (1068)
T ss_pred CCeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHhcCCCEEEEeCCCC---CCCC
Confidence 77664 6799999999999999999976 899999998852 2223222 2468999999998743 5789
Q ss_pred eEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECC--EEEEE--EEe-cCCCCCcccccCCCceeeecCcc
Q 019600 179 LSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVV--RRF-SLPDVTKQDLSTSAGVFRFPRVS 246 (338)
Q Consensus 179 m~iv~~~~~L~~l-------~~p~vvQeFI~h~g~~~KV~VIGd--~v~~~--~R~-Slp~~~~~~~~~~~g~~~~~~~s 246 (338)
|.++.++++|.++ ..|+++|||| .|..+-|-++.| .+.+. ... ....+..++ +
T Consensus 721 v~iv~~~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~dg~~v~i~~i~e~~e~~gv~sGd-------------s 785 (1068)
T PRK12815 721 MAVVYDEPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISDGEDVTIPGIIEHIEQAGVHSGD-------------S 785 (1068)
T ss_pred EEEECCHHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEcCCceEEeeEEEEeeccCCcCCC-------------e
Confidence 9999999988652 5689999999 477887777743 33321 111 100000000 0
Q ss_pred cccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 247 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
. ....+..+++. ..+.+++++.++.++||+. +++||+++++ + .+||||||.-+|
T Consensus 786 -~-~v~pp~~l~~~-----~~~~i~~~a~ki~~~L~~~G~~niqf~v~~--~-~~yviEiNpR~s 840 (1068)
T PRK12815 786 -I-AVLPPQSLSEE-----QQEKIRDYAIKIAKKLGFRGIMNIQFVLAN--D-EIYVLEVNPRAS 840 (1068)
T ss_pred -e-EEECCCCCCHH-----HHHHHHHHHHHHHHHcCCccEEEEEEEEEC--C-cEEEEEEeCCCC
Confidence 0 00011122211 1357899999999999966 5579999974 3 589999999987
No 49
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.52 E-value=1e-12 Score=132.12 Aligned_cols=232 Identities=13% Similarity=0.142 Sum_probs=141.8
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCC-------Cc-------------------------CCCccEEEEccCc-hhHHHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPL-------SD-------------------------QGPFDIVLHKLTG-KEWRQI 90 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l-------~~-------------------------qg~~DvilhK~~~-~~~~~~ 90 (338)
.....++++|+++|++++.++.+..- .+ ...+|+|+.-.+. .++. .
T Consensus 12 ~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~~-~ 90 (451)
T PRK08591 12 EIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENA-D 90 (451)
T ss_pred HHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCccccCH-H
Confidence 34456888999999999888443210 00 0124555543210 0111 1
Q ss_pred HHHHHHhCCCcee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEee
Q 019600 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 167 (338)
Q Consensus 91 l~~~~~~~p~v~V-iDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (338)
+.... +.-|+++ -.+++++..+.||..|.+.|.++ +||+|++. .+. +.+++.+. ...++||+|+||
T Consensus 91 ~~~~~-e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gIp~pp~~~~~v~-~~~~~~~~--~~~~g~PvvvKP 159 (451)
T PRK08591 91 FAEIC-EDSGFTFIGPSAETIRLMGDKVTAKATMKKA-------GVPVVPGSDGPVD-DEEEALAI--AKEIGYPVIIKA 159 (451)
T ss_pred HHHHH-HHCCCceECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEE
Confidence 22222 2246764 47899999999999999999975 89998863 343 22222222 246899999999
Q ss_pred CCCCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCcc
Q 019600 168 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQ 231 (338)
Q Consensus 168 ~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~ 231 (338)
..++ +|.++.++.++++|.+. +..+++||||+ +++.+-+-+++| ++....-+..
T Consensus 160 ~~g~---gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~------ 229 (451)
T PRK08591 160 TAGG---GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE-NPRHIEIQVLADGHGNAIHLGERDC------ 229 (451)
T ss_pred CCCC---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEecccc------
Confidence 8853 57899999999887642 35699999996 367788777754 2332211100
Q ss_pred cccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCC
Q 019600 232 DLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 232 ~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg 310 (338)
..... ....+. . +....+++. ..+.+.++|.++.++||+.-.+ ||++++. +| ++||+|||.-++
T Consensus 230 ~~~~~-~~~~~~---~----~p~~~l~~~-----~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~ 294 (451)
T PRK08591 230 SLQRR-HQKVLE---E----APSPAITEE-----LRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQ 294 (451)
T ss_pred cceec-ceeEEE---E----CCCCCCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCC
Confidence 00000 000000 0 000112111 1457889999999999998655 9999975 34 699999999886
Q ss_pred CC
Q 019600 311 YG 312 (338)
Q Consensus 311 ~~ 312 (338)
..
T Consensus 295 ~~ 296 (451)
T PRK08591 295 VE 296 (451)
T ss_pred cc
Confidence 44
No 50
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.52 E-value=1.5e-12 Score=132.95 Aligned_cols=176 Identities=10% Similarity=0.185 Sum_probs=120.2
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-ecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~-~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (338)
-|++++ .++++++.+.||..+.+++.++ +||+|++... -.+.+++.+. ...++||+|+||..++ +|
T Consensus 98 ~gi~~iGps~~~i~~~~DK~~~k~~l~~~-------GVpv~p~~~~~v~~~~e~~~~--a~~igyPvvIKp~~Gg---GG 165 (499)
T PRK08654 98 AGIVFIGPSSDVIEAMGSKINAKKLMKKA-------GVPVLPGTEEGIEDIEEAKEI--AEEIGYPVIIKASAGG---GG 165 (499)
T ss_pred CCCcEECCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCCcCcCCCCHHHHHHH--HHHhCCCEEEEeCCCC---CC
Confidence 377765 5689999999999999999875 8999877542 1122223222 3468999999998754 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCCcccccCCCc
Q 019600 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSAG 238 (338)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~-~~~R~-Slp~~~~~~~~~~~g 238 (338)
.+|.++.++++|.+. +.++++|+||. +++.+.|-|+||. ++ ...|. |... .
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiqr--------r-- 234 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQR--------R-- 234 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeecccccc--------C--
Confidence 899999999988642 35799999997 4678888888763 22 22332 2100 0
Q ss_pred eeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 239 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
++.. -.. .++ .+++.. .+.+.++|.++.++||+.-.| ||++.++ | .+|++|||.-++..
T Consensus 235 ----~qk~--ie~-~Pa~~l~~~~-----~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlqve 295 (499)
T PRK08654 235 ----HQKL--IEE-APSPIMTPEL-----RERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQVE 295 (499)
T ss_pred ----ccce--EEE-CCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCCCC
Confidence 0000 000 011 122211 356889999999999999887 9999863 4 69999999988754
No 51
>PLN02735 carbamoyl-phosphate synthase
Probab=99.52 E-value=7.2e-13 Score=146.01 Aligned_cols=232 Identities=13% Similarity=0.163 Sum_probs=150.6
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCC------------------------cCCCccEEEEccCchhHH---HHHH-HH
Q 019600 43 SFLQPKLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKEWR---QILE-EY 94 (338)
Q Consensus 43 ~~~~~~l~~~~~~~gi~~~~id~~~~l~------------------------~qg~~DvilhK~~~~~~~---~~l~-~~ 94 (338)
.++-..+++++++.|++++.+|.+-... +...+|+|+.=+.++... ..+. +.
T Consensus 43 d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g 122 (1102)
T PLN02735 43 DYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESG 122 (1102)
T ss_pred cchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhC
Confidence 3455568999999999999999865210 123578888765443221 1222 12
Q ss_pred HHhCCCcee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCC-CcEEEeeCCCCC
Q 019600 95 RQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADG 172 (338)
Q Consensus 95 ~~~~p~v~V-iDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~G 172 (338)
.-+.-|+++ -.+++++..+.||..+-+.|.++ +||+|++..+.+ .++..+. ...++ ||+|+||..+.
T Consensus 123 ~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~eea~~~--~~~iG~yPvVVKP~~~~- 191 (1102)
T PLN02735 123 ILEKYGVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATT-LDECFEI--AEDIGEFPLIIRPAFTL- 191 (1102)
T ss_pred HHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCC-HHHHHHH--HHHhCCCCEEEEeCCCC-
Confidence 212246655 46889999999999999999875 899999998853 2222222 23577 99999998844
Q ss_pred CCcceeeEEEeChhhHhcc---------CCCeEEEecccCCC-cEEEEEEECC---EEE--EEEEecCCCCCcccccCCC
Q 019600 173 SAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGE---AIK--VVRRFSLPDVTKQDLSTSA 237 (338)
Q Consensus 173 s~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g-~~~KV~VIGd---~v~--~~~R~Slp~~~~~~~~~~~ 237 (338)
++.++.++.|+++|... +.++++||||. | +.|-|-|++| .+. +....--|. ...+.+
T Consensus 192 --GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~--G~kE~ev~Vl~D~~g~~i~v~~ie~~dp~----gvh~G~ 263 (1102)
T PLN02735 192 --GGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL--GWKEYELEVMRDLADNVVIICSIENIDPM----GVHTGD 263 (1102)
T ss_pred --CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC--CCeEEEEEEEEcCCCCEEEEeeEEEEcCC----ccccCC
Confidence 45588999999998652 45799999995 5 7899999976 222 111110010 000000
Q ss_pred ceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 238 GVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl--~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
... ..+. .+++.. ...++++|.++.++||+ ..+.||++++..+| ++||||||.-++
T Consensus 264 ------s~~-----vaPa~tL~~~~-----~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVNPR~s 322 (1102)
T PLN02735 264 ------SIT-----VAPAQTLTDKE-----YQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMNPRVS 322 (1102)
T ss_pred ------EEE-----EEeCCCCCHHH-----HHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEecCCCC
Confidence 000 0011 122111 35689999999999998 57789999985345 799999995444
No 52
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.51 E-value=1.6e-12 Score=131.91 Aligned_cols=230 Identities=13% Similarity=0.145 Sum_probs=142.2
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCC-------CcC------------------------CCccEEEEcc--CchhHHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPL-------SDQ------------------------GPFDIVLHKL--TGKEWRQIL 91 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l-------~~q------------------------g~~DvilhK~--~~~~~~~~l 91 (338)
+..+++++|+++|++++.++.+..- .++ ...|+|+.=. .. +. ..+
T Consensus 13 ia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~ls-e~-~~~ 90 (472)
T PRK07178 13 IAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLS-EN-AEL 90 (472)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcc-cC-HHH
Confidence 3456888999999999888665311 000 1345555411 01 11 112
Q ss_pred HHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCChhHHHHhcCCCCcEEEeeCC
Q 019600 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLV 169 (338)
Q Consensus 92 ~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (338)
.+..++ -|++++ .++++++.+.||..+.+.+.++ +||+|++.... .+.++..+ ....++||+|+||..
T Consensus 91 a~~~e~-~Gi~~igps~~~i~~~~DK~~~r~~l~~~-------GIp~pp~~~~~~~~~~e~~~--~~~~igyPvvvKp~~ 160 (472)
T PRK07178 91 AEICAE-RGIKFIGPSAEVIRRMGDKTEARRAMIKA-------GVPVTPGSEGNLADLDEALA--EAERIGYPVMLKATS 160 (472)
T ss_pred HHHHHH-cCCCccCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCCcCcCCCCHHHHHH--HHHHcCCcEEEEeCC
Confidence 223322 367655 6689999999999999999975 89998875321 12222222 124689999999988
Q ss_pred CCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEE-EEEecCCCCCccc
Q 019600 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRFSLPDVTKQD 232 (338)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~-~~R~Slp~~~~~~ 232 (338)
++ +|.+|.++.++++|.+. +.++++|+||. +++.+-|-|+|+. +.. ..|.- .
T Consensus 161 gg---Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~~-------s 229 (472)
T PRK07178 161 GG---GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPKHIEVQILADSHGNVVHLFERDC-------S 229 (472)
T ss_pred CC---CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCeEEEEEEEEECCCCEEEEEcccc-------c
Confidence 43 57899999999988641 35799999996 5777878777642 222 22210 0
Q ss_pred ccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCC
Q 019600 233 LSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 311 (338)
Q Consensus 233 ~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~ 311 (338)
. ...+... ...+....+++.. .+.++++|.++.++||+.-.| +|++++.+ | .+|++|||.-++-
T Consensus 230 ~------~~~~~~~--~e~~P~~~l~~~~-----~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl~~ 294 (472)
T PRK07178 230 I------QRRNQKL--IEIAPSPQLTPEQ-----RAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRVQV 294 (472)
T ss_pred e------EecCcce--EEECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCcCC
Confidence 0 0000000 0000001222111 346788999999999997665 99999753 4 5999999988765
Q ss_pred C
Q 019600 312 G 312 (338)
Q Consensus 312 ~ 312 (338)
.
T Consensus 295 ~ 295 (472)
T PRK07178 295 E 295 (472)
T ss_pred C
Confidence 4
No 53
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.49 E-value=1.3e-12 Score=144.04 Aligned_cols=231 Identities=15% Similarity=0.225 Sum_probs=148.8
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCC-------C-----------------cCCCccEEEEccCchhHH---HHHHH--HH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPL-------S-----------------DQGPFDIVLHKLTGKEWR---QILEE--YR 95 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l-------~-----------------~qg~~DvilhK~~~~~~~---~~l~~--~~ 95 (338)
+-..+.+++++.|++++.+|.+... . +...+|+|+.-+.++... ..+.+ ..
T Consensus 29 sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~l 108 (1066)
T PRK05294 29 SGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVL 108 (1066)
T ss_pred hHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHH
Confidence 3345788889999999999976421 0 123578888766543221 11211 12
Q ss_pred HhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCC
Q 019600 96 QTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (338)
Q Consensus 96 ~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (338)
+ .-|+.++ -++++++.+.||..+.+.|.++ |||+|++..+++ .+++.+. ...++||+|+||..+ .
T Consensus 109 e-~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~--~~~ig~PvVVKP~~g--~- 174 (1066)
T PRK05294 109 E-KYGVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEV--AEEIGYPVIIRPSFT--L- 174 (1066)
T ss_pred H-HCCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHH--HHHcCCCeEEEcCCC--C-
Confidence 2 2367665 5789999999999999999976 899999998852 2233332 246899999999863 3
Q ss_pred cceeeEEEeChhhHhcc---------CCCeEEEecccCCC-cEEEEEEECC---EEEEEEEecCCCCCcccccCCCceee
Q 019600 175 KSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFR 241 (338)
Q Consensus 175 ~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g-~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~ 241 (338)
+++++.++.++++|... ..++++||||+ | +.+-+-|+.| .+..+. +..++....
T Consensus 175 gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~--G~~Eisv~v~rd~~g~~~~~~--~~e~~dp~g--------- 241 (1066)
T PRK05294 175 GGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL--GWKEYEYEVMRDKNDNCIIVC--SIENIDPMG--------- 241 (1066)
T ss_pred CCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc--CceEEEEEEEEcCCCCEEEEe--eeeeccccc---------
Confidence 67789999999988652 24799999995 5 5787777744 232221 111111000
Q ss_pred ecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 242 FPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 242 ~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~--l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.|.... . ...++ .+++. ..+.++++|.++.++||+. .++||+.++..+| ++||+|||.-++
T Consensus 242 ih~g~~-~-~~~Pa~~l~~~-----~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 242 VHTGDS-I-TVAPAQTLTDK-----EYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred eecCCe-E-EEeCCCCCCHH-----HHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 010000 0 00011 11111 1346899999999999998 6789999985445 799999996554
No 54
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.49 E-value=3.8e-12 Score=127.06 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcce
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
.|++++ .++++++.+.||..|-+.|+++ +||+|++..+. +.+++.+.+ ..++||+|+||..+ + +|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~VvKP~~~--~-gs~ 151 (420)
T PRK00885 85 AGLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFT-DAEEALAYL--DEKGAPIVVKADGL--A-AGK 151 (420)
T ss_pred CCCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeC-CHHHHHHHH--HHcCCCEEEEeCCC--C-CCC
Confidence 477776 5678999999999999999975 89999999885 222233322 35899999999764 3 577
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC
Q 019600 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (338)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd 215 (338)
++.++.+.+++.+. ..++++||||+ |..|-|.++.+
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 152 GVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred cEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 89999999887541 24799999995 89998888743
No 55
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.48 E-value=1.9e-12 Score=142.52 Aligned_cols=233 Identities=15% Similarity=0.237 Sum_probs=150.2
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCC------------------------cCCCccEEEEccCchhH--HH-HHH-HHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKEW--RQ-ILE-EYR 95 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~------------------------~qg~~DvilhK~~~~~~--~~-~l~-~~~ 95 (338)
++-...++++++.|++++.+|.+.... +...+|+|+.-+.++.. +. .+. +-.
T Consensus 27 ~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~ 106 (1050)
T TIGR01369 27 YSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGV 106 (1050)
T ss_pred chHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhH
Confidence 444558889999999999999875210 12357888875543221 11 111 112
Q ss_pred HhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCC
Q 019600 96 QTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (338)
Q Consensus 96 ~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (338)
-+.-|+.++ .+++++..+.||..+.+.|.++ ++|+|++..+.+ .++..+. ...++||+|+||..+ +
T Consensus 107 le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~--~~~igyPvIVKP~~g--~- 173 (1050)
T TIGR01369 107 LEKYGVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHS-VEEALAA--AKEIGYPVIVRPAFT--L- 173 (1050)
T ss_pred HHHCCCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCC-HHHHHHH--HHHhCCCeEEECCCC--C-
Confidence 233477666 7899999999999999999975 899999998853 2223222 246899999999864 3
Q ss_pred cceeeEEEeChhhHhcc-------C--CCeEEEecccCCC-cEEEEEEECC---EEEEEEEecCCCCCcccccCCCceee
Q 019600 175 KSHELSLAYDQYSLKKL-------E--PPLVLQEFVNHGG-VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFR 241 (338)
Q Consensus 175 ~sh~m~iv~~~~~L~~l-------~--~p~vvQeFI~h~g-~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~ 241 (338)
+|.++.++.|+++|... . .++++||||+ | +.+-+-|++| .+.++ .+.-++.+....+. +.
T Consensus 174 gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~--G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~gvh~g-~~-- 246 (1050)
T TIGR01369 174 GGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA--GWKEIEYEVMRDSNDNCITV--CNMENFDPMGVHTG-DS-- 246 (1050)
T ss_pred CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc--CceEEEEEEEEeCCCCEEEE--eeceeccCcceecC-ce--
Confidence 57889999999988653 1 5799999996 5 6777777744 22221 11112111000000 00
Q ss_pred ecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEeccCCCC
Q 019600 242 FPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 242 ~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~-GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
... .++ .+++. ..+.++++|.++.++||+.-. +||++++..+| ++||+|||.-++
T Consensus 247 ---i~v-----~Pa~tl~~~-----~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~ 303 (1050)
T TIGR01369 247 ---IVV-----APSQTLTDK-----EYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVS 303 (1050)
T ss_pred ---EEE-----ecCCCCCHH-----HHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcC
Confidence 000 011 11111 134689999999999999744 59999985444 799999997776
No 56
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.47 E-value=1.8e-12 Score=130.59 Aligned_cols=191 Identities=14% Similarity=0.167 Sum_probs=121.3
Q ss_pred HHHHHHhCCCcee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC-CChhHHHHhcCCCCcEEEeeC
Q 019600 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPL 168 (338)
Q Consensus 91 l~~~~~~~p~v~V-iDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~-~~~~~~l~~~~l~fP~VvKp~ 168 (338)
+|...+. -|+++ .=++.++..|+||..+.++++++ |||+|++..+..+. +++........++||+|+||.
T Consensus 118 iQ~lLE~-lGIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQ-AGLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 4444433 47777 77788999999999999999865 89999998753121 112221222249999999999
Q ss_pred CCCCCCcceeeEEEeChhhHhcc------CCCeEEEecccCCCcEEEE--EEECCE-EEEE-EEecCCCCCcccccC-CC
Q 019600 169 VADGSAKSHELSLAYDQYSLKKL------EPPLVLQEFVNHGGVLFKV--YIVGEA-IKVV-RRFSLPDVTKQDLST-SA 237 (338)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l------~~p~vvQeFI~h~g~~~KV--~VIGd~-v~~~-~R~Slp~~~~~~~~~-~~ 237 (338)
. |+ .|+++.+|.++++|..+ ...+++|+||+ |+.+-| ++-++. +... .+..++-. ++.. ..
T Consensus 190 ~--GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~yr~ 261 (493)
T PRK06524 190 Y--GD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPYRG 261 (493)
T ss_pred C--CC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccce---EEEEccC
Confidence 6 33 48999999999998764 24689999995 787766 544432 3221 11111110 1000 01
Q ss_pred ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh---C-CcEeEEEEEEeCCCCCeEEEEeccCCCCC
Q 019600 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---G-LRLFNLDIIREHGTRDQFYVIDINYFPGY 311 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L---G-l~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (338)
|.+. ....++.+++.. .++++++|.++.++| | -.+++||++++.++| ++|++|||.=||=
T Consensus 262 G~~~--------~~i~PA~L~~ei-----~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~G 325 (493)
T PRK06524 262 GWCG--------NDIWPGALPPAQ-----TRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLSG 325 (493)
T ss_pred CeEE--------EEEccCCCCHHH-----HHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCccc
Confidence 1111 001133333322 457899999999999 3 445569999985344 6999999988774
No 57
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.47 E-value=7e-12 Score=125.93 Aligned_cols=236 Identities=13% Similarity=0.110 Sum_probs=142.4
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHh
Q 019600 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~ 125 (338)
..+.++|++.+++++.+.++.++ ...+.+..++ -|++++ -+.++++.+.||..+-+.|.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~-~Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVK-AGIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-CCCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 45778888888888777655432 1223333322 367766 667899999999999999997
Q ss_pred ccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------------C
Q 019600 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------E 192 (338)
Q Consensus 126 ~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~ 192 (338)
+ +||+|++..+. +.+++.+.+ ..++||+|+||.. |+ +|.++.++.+.+++.+. .
T Consensus 113 ~-------GIptp~~~~~~-~~~e~~~~~--~~~g~PvVVKp~~--~~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFT-DPAAAKKYI--KEQGAPIVVKADG--LA-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeC-CHHHHHHHH--HHcCCCEEEEcCC--CC-CCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 5 89999998884 322333322 3589999999984 33 57899999999876431 3
Q ss_pred CCeEEEecccCCCcEEEEEEECC--EEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHH
Q 019600 193 PPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL 270 (338)
Q Consensus 193 ~p~vvQeFI~h~g~~~KV~VIGd--~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~ 270 (338)
.++++||||. |..+-|.++.| .++... .+. +...+|+++...+.+. .....|.. .++ .+..
T Consensus 180 ~~vlIEefi~--G~E~Sv~~~~dG~~~~pl~----~~~------dhkr~~d~d~g~ntgg---mg~~sp~p-~l~-~~~~ 242 (434)
T PLN02257 180 SEVVVEEFLD--GEEASFFALVDGENAIPLE----SAQ------DHKRVGDGDTGPNTGG---MGAYSPAP-VLT-PELE 242 (434)
T ss_pred CeEEEEECCC--CCEEEEEEEECCCcEEEEE----eee------ecccccCCCCCCCCCC---CeeEecCC-CCC-HHHH
Confidence 5799999995 88999877633 222111 010 0112233333221110 00011110 011 1222
Q ss_pred ----HHHHH---HHHHHhCCcEeE---EEEEEeCCCCCeEEEEeccCCCCCCC----cccchHHHHHHHHHHHHhh
Q 019600 271 ----ERLAK---ELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGYGK----MPEYEHIFTDFLLSLTQSR 332 (338)
Q Consensus 271 ----~~lA~---~l~~~LGl~l~G---vDvi~~~~~g~~~~ViDVN~fPg~~g----v~~~~~~l~~~l~~~i~~~ 332 (338)
++++. ++.++.|+.+.| +|++++..+| .++|+|+|.-||... ++.....|.+.+...+.++
T Consensus 243 ~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~ 317 (434)
T PLN02257 243 SKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGE 317 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCC
Confidence 33332 334578888776 7999872234 589999999999642 2223345666666666653
No 58
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.47 E-value=3.2e-12 Score=140.72 Aligned_cols=178 Identities=12% Similarity=0.165 Sum_probs=119.9
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-ecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~-~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (338)
.|+.++ .++++++.+.||..+.+.+.++ +||+|++... -.+.+++.+. ...++||+|+||..++ +|
T Consensus 98 ~Gi~fiGps~e~i~~~~DK~~ar~la~~~-------GVPvpp~t~~~v~~~eea~~~--ae~iGyPvIVKP~~GG---GG 165 (1143)
T TIGR01235 98 AGIIFIGPKAEVMDQLGDKVAARNLAIKA-------GVPVVPGTDGPPETMEEVLDF--AAAIGYPVIIKASWGG---GG 165 (1143)
T ss_pred cCCcccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccCcCCHHHHHHH--HHHcCCCEEEEECCCC---CC
Confidence 466665 5689999999999999999875 8999886522 1122222222 2468999999997743 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE----EEEEEEe-cCCCCCcccccCCCc
Q 019600 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAG 238 (338)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~----v~~~~R~-Slp~~~~~~~~~~~g 238 (338)
++|.++.++++|... +.++++|+||+ +++.+.|-|+||. ++...|. |...
T Consensus 166 rG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr----------- 233 (1143)
T TIGR01235 166 RGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR----------- 233 (1143)
T ss_pred CccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc-----------
Confidence 899999999887642 45799999996 4788999999774 2233332 1100
Q ss_pred eeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
.|+... ..+....+++.. .+.+.++|.++.++||+.-+| ||++++. +| ++|+||||.-++..
T Consensus 234 ---r~qk~i--e~aPa~~L~~e~-----r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg-~~yfIEVNPRiqve 296 (1143)
T TIGR01235 234 ---RHQKVV--EVAPAPYLSREV-----RDEIAEYAVKLAKAVNYINAGTVEFLVDN-DG-KFYFIEVNPRIQVE 296 (1143)
T ss_pred ---cCceEE--EEeCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEeC-CC-cEEEEEeecCCCcc
Confidence 000000 000001121111 356889999999999987666 9999985 34 69999999988754
No 59
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.46 E-value=6.4e-12 Score=126.19 Aligned_cols=180 Identities=12% Similarity=0.186 Sum_probs=114.1
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-ecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~-~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (338)
-|++++ .++++++.+.||..+.+.|.++ +|++|++... -.+.+++.+. ...++||+|+||..++ +|
T Consensus 98 ~g~~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~~~~~e~~~~--~~~~~~P~VvKP~~g~---gs 165 (450)
T PRK06111 98 EGIVFIGPSADIIAKMGSKIEARRAMQAA-------GVPVVPGITTNLEDAEEAIAI--ARQIGYPVMLKASAGG---GG 165 (450)
T ss_pred CCCeEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcCcCcCCHHHHHHH--HHHhCCCEEEEeCCCC---CC
Confidence 366655 6689999999999999999975 8999986322 1222222222 2458999999998743 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCcccccCCCcee
Q 019600 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVF 240 (338)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~ 240 (338)
+++.++.+.++|.+. +.++++||||. +++.+.+.++++ .+.....+..+ +.. ......
T Consensus 166 ~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~~~-~~~----~~~~~~ 239 (450)
T PRK06111 166 IGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE-DPRHIEIQLLADTHGNTVYLWERECS-VQR----RHQKVI 239 (450)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC-CCcEEEEEEEEcCCCCEEEEEeeccc-ccc----cccceE
Confidence 899999999887641 35799999996 345667666543 23322111000 000 000000
Q ss_pred eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 241 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
. ... ...+++. ..+.++++|.++.++||+. ++.+|++++. +| ++||+|||.-|+..
T Consensus 240 ~-----~~p----~~~~~~~-----~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g-~~~viEiN~R~~~~ 296 (450)
T PRK06111 240 E-----EAP----SPFLDEE-----TRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QK-NFYFLEMNTRLQVE 296 (450)
T ss_pred E-----ecC----CCCCCHH-----HHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcCCc
Confidence 0 000 0011111 1356889999999999995 4459999975 34 58999999988643
No 60
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.41 E-value=9.6e-12 Score=124.67 Aligned_cols=236 Identities=13% Similarity=0.202 Sum_probs=137.4
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChH-HHHHHhccHHHHHHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQC 122 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~-~ai~~l~dR~~~~~~ 122 (338)
.....+.+.|++.+++++.+.++.++ .+-+.+..++ -|++++-|. .+.+.+.||..+-+.
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E~~l------------------~~glad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~ 115 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPEDPL------------------VAGFADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSL 115 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHH
Confidence 34455777777777777776554432 1222222222 377877554 467788999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-----------
Q 019600 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----------- 191 (338)
Q Consensus 123 L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l----------- 191 (338)
|.++ +||+|++..+. +.+++.+.+ ..++||+|+||... + .|.++.++.+.+++.+.
T Consensus 116 l~~~-------gIpt~~~~~~~-~~~ea~~~~--~~~~~PvVVKp~~~--~-~gkGV~vv~~~eel~~a~~~~~~~~~~g 182 (426)
T PRK13789 116 MKEA-------KIPTASYKTFT-EYSSSLSYL--ESEMLPIVIKADGL--A-AGKGVTVATEKKMAKRALKEIFKDKKFG 182 (426)
T ss_pred HHHc-------CCCCCCeEeeC-CHHHHHHHH--HhcCCCEEEEeCCC--C-CCCcEEEECCHHHHHHHHHHHHhhcccc
Confidence 9975 89999998875 322233322 35799999999752 2 57899999999876541
Q ss_pred --CCCeEEEecccCCCcEEEEEEECC--EEEEEEEecCCCCCcccccCCCceeeecCccccc---ccCCCCC-CCccccC
Q 019600 192 --EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA---ASADDAD-LDPCVAE 263 (338)
Q Consensus 192 --~~p~vvQeFI~h~g~~~KV~VIGd--~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~---~~~~~~~-~~~~~~~ 263 (338)
...+++||||. |+.|-|.++.+ .+++. |-.. + ....|+.+.....+ +. .+.. +++..
T Consensus 183 ~~~~~vlIEEfl~--G~E~Sv~~~~dg~~~~~l-----p~~~--d---~k~~~d~d~g~~tggmg~~-~P~p~~~~~~-- 247 (426)
T PRK13789 183 QSGNQVVIEEFME--GQEASIFAISDGDSYFLL-----PAAQ--D---HKRAFDGDQGPNTGGMGAY-CPAPVITEAI-- 247 (426)
T ss_pred CCCCeEEEEECcC--CeEEEEEEEECCCEEEEc-----cceE--e---cccccCCCCCCCCCCceEE-eeCCCCCHHH--
Confidence 13699999994 89999988854 33321 1100 0 00111111111000 00 0111 11110
Q ss_pred CCChHHH-HHHHHHHHHH---hCCc---EeEEEEEEeCCCCCeEEEEeccCCCCCCC----cccchHHHHHHHHHHHHh
Q 019600 264 LPPRPLL-ERLAKELRRQ---LGLR---LFNLDIIREHGTRDQFYVIDINYFPGYGK----MPEYEHIFTDFLLSLTQS 331 (338)
Q Consensus 264 ~p~~~~~-~~lA~~l~~~---LGl~---l~GvDvi~~~~~g~~~~ViDVN~fPg~~g----v~~~~~~l~~~l~~~i~~ 331 (338)
.+.+ ++++..+.++ +|+. ++.+|++++. +| .++|+|+|.-||--. ++-....|.+.+...+.+
T Consensus 248 ---~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g-~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g 321 (426)
T PRK13789 248 ---LQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EG-EPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTG 321 (426)
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CC-CEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcC
Confidence 1222 2355455544 4654 4568999975 34 589999999998421 222233456666666655
No 61
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.40 E-value=1.5e-11 Score=135.55 Aligned_cols=234 Identities=16% Similarity=0.232 Sum_probs=148.9
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCC------------------------cCCCccEEEEccCchhHH---HHHHH--H
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKEWR---QILEE--Y 94 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~------------------------~qg~~DvilhK~~~~~~~---~~l~~--~ 94 (338)
++...+++++++.|++++.+|.+.... +...+|+|+.=+.++... ..+.+ .
T Consensus 28 ~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~ 107 (1068)
T PRK12815 28 YSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGI 107 (1068)
T ss_pred hHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCH
Confidence 344558889999999999999775311 122678888754433221 11211 1
Q ss_pred HHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCC
Q 019600 95 RQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS 173 (338)
Q Consensus 95 ~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs 173 (338)
. +.-|+.++ -+++++..+.||..+.+.|.++ +||+|++..+.+ .+++.+. ...++||+|+||..+.
T Consensus 108 L-e~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~--~~~igyPvVVKP~~g~-- 174 (1068)
T PRK12815 108 L-EQYGVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALAF--AEKIGFPIIVRPAYTL-- 174 (1068)
T ss_pred H-HHCCCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHHH--HHHcCCCEEEEECcCC--
Confidence 2 22467765 6789999999999999999976 899999998853 2223222 2458999999998743
Q ss_pred CcceeeEEEeChhhHhcc---------CCCeEEEecccCCC-cEEEEEEECCE---EEEEEEecCCCCCcccccCCCcee
Q 019600 174 AKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVF 240 (338)
Q Consensus 174 ~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g-~~~KV~VIGd~---v~~~~R~Slp~~~~~~~~~~~g~~ 240 (338)
++.++.++.++++|.+. ..++++||||+ | +.+-|-|++|. +..+ .+..++....+.+ |
T Consensus 175 -gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~--G~~E~sv~v~rD~~g~~~~~--~~~e~~~p~gi~t--G-- 245 (1068)
T PRK12815 175 -GGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA--GWKEIEYEVMRDRNGNCITV--CNMENIDPVGIHT--G-- 245 (1068)
T ss_pred -CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC--CCeEEEEEEEEcCCCCEEEE--EeceecccccccC--C--
Confidence 46788899999988653 24799999995 5 58888888652 3222 1111111111000 0
Q ss_pred eecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 241 RFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 241 ~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
+.... .++ .+++. ....++++|.++.++||+. .++||+.++..+| +++|+||| |.+.+.
T Consensus 246 --~s~~v-----~Pa~~l~~~-----~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEIN--PR~~~s 306 (1068)
T PRK12815 246 --DSIVV-----APSQTLTDD-----EYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVN--PRVSRS 306 (1068)
T ss_pred --ceEEE-----ecCCCCCHH-----HHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEe--cCcccc
Confidence 00000 011 11111 1346889999999999994 4469999986434 79999999 444443
No 62
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.37 E-value=4.1e-11 Score=119.48 Aligned_cols=179 Identities=13% Similarity=0.126 Sum_probs=111.4
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCc-EEEeeCCCCCCCcce
Q 019600 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKSH 177 (338)
Q Consensus 100 ~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~Gs~~sh 177 (338)
|++++ .++++++.++||..|.+.|.++ +||+|++..+. +.+++.+. ...++|| +|+||..+ + +|.
T Consensus 88 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~-~~~~~~~~--~~~~g~P~~VvKp~~~--~-gg~ 154 (423)
T TIGR00877 88 GIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFT-DPEEALSY--IQEKGAPAIVVKADGL--A-AGK 154 (423)
T ss_pred CCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHH--HHhcCCCeEEEEECCC--C-CCC
Confidence 66665 6788999999999999999975 89999999885 22233332 2458999 99999764 3 577
Q ss_pred eeEEEeChhhHhcc------------CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCCcccccCCCceee
Q 019600 178 ELSLAYDQYSLKKL------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFR 241 (338)
Q Consensus 178 ~m~iv~~~~~L~~l------------~~p~vvQeFI~h~g~~~KV~VI--Gd~v~~~--~R~Slp~~~~~~~~~~~g~~~ 241 (338)
++.++.+.+++... ..++++||||+ |..|-|.++ |+.+... .|.--..+ .++ .+.
T Consensus 155 Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~~-~~~----~~~-- 225 (423)
T TIGR00877 155 GVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAFVDGKTVIPMPPAQDHKRAL-EGD----KGP-- 225 (423)
T ss_pred CEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEEEcCCeEEeceeeeeeeecc-cCC----CCC--
Confidence 99999999886541 24799999995 789988777 4443322 11100000 000 000
Q ss_pred ecCcccccccCCCCCCCccccCCCC---hHHHHHHHHHHHHHh---CC---cEeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 242 FPRVSCAAASADDADLDPCVAELPP---RPLLERLAKELRRQL---GL---RLFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 242 ~~~~s~~~~~~~~~~~~~~~~~~p~---~~~~~~lA~~l~~~L---Gl---~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
+... .....|.. .++. .+..++++..+.++| |+ ..+.+|+++++ +| ++|+|||.-||-.
T Consensus 226 -~~g~-------~~~~~p~~-~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g--~~viEin~R~g~~ 293 (423)
T TIGR00877 226 -NTGG-------MGAYSPAP-VFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG--PKVLEFNCRFGDP 293 (423)
T ss_pred -CCCC-------CceecCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC--cEEEEEEccCCCc
Confidence 0000 00011110 1111 122345566666666 33 45679999975 34 8999999999843
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.36 E-value=2.8e-11 Score=133.66 Aligned_cols=177 Identities=15% Similarity=0.215 Sum_probs=117.1
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEE--EecCCCChhHHHHhcCCCCcEEEeeCCCCCCCc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~--~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
-|++++ .++++++.+.||..+.+.+.++ +||+|++.. +. +.+++.+. ...++||+|+||..++ +
T Consensus 102 ~Gi~fiGps~eai~~~~DK~~~r~~l~~~-------GVPv~P~~~~~v~-s~eea~~~--a~~iGyPvVVKP~~Gg---G 168 (1146)
T PRK12999 102 AGITFIGPTAEVLRLLGDKVAARNAAIKA-------GVPVIPGSEGPID-DIEEALEF--AEEIGYPIMLKASAGG---G 168 (1146)
T ss_pred cCCcccCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCCC-CHHHHHHH--HHHhCCCEEEEECCCC---C
Confidence 366654 6799999999999999999875 899877553 32 22223222 2468999999998854 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEE-EEe-cCCCCCcccccCCC
Q 019600 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQDLSTSA 237 (338)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~~-~R~-Slp~~~~~~~~~~~ 237 (338)
|++|.++.++++|... +.++++|+||+ +++.+-|-|+||. +... .|- |.. ..
T Consensus 169 GrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsvq--------rr- 238 (1146)
T PRK12999 169 GRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSVQ--------RR- 238 (1146)
T ss_pred CCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-CCeEEEEEEEEECCCCEEEEEcccccee--------ec-
Confidence 7899999999887642 35799999997 4567788777642 2221 221 100 00
Q ss_pred ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
|+... ..+....+++.. .+.+.++|.++.+++|+.-.| +|++++.+ | .+|+||||.-++..
T Consensus 239 -----~qk~i--e~aP~~~L~~~~-----~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlqve 300 (1146)
T PRK12999 239 -----HQKVV--EIAPAPGLSEEL-----RERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQVE 300 (1146)
T ss_pred -----CccEE--EEcCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCCCc
Confidence 00000 000000121111 356889999999999998776 99999853 4 59999999888643
No 64
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.35 E-value=6.8e-11 Score=118.86 Aligned_cols=238 Identities=10% Similarity=0.054 Sum_probs=138.1
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L 123 (338)
..+.+++.|++.+++++..-++.+| ......+|.+. |++++ .+.++++.+.||..|.+.|
T Consensus 53 d~e~l~~~~~~~~id~Vi~~~d~~l-----------------~~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l 113 (435)
T PRK06395 53 DYDLIEDFALKNNVDIVFVGPDPVL-----------------ATPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLM 113 (435)
T ss_pred CHHHHHHHHHHhCCCEEEECCChHH-----------------HHHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHH
Confidence 4456788888888777666443322 11233344444 78876 8899999999999999999
Q ss_pred HhccccCCCCCccCCcEE-EEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeCh----hh-Hhc------c
Q 019600 124 ADMNLSNSYGKVDVPRQL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ----YS-LKK------L 191 (338)
Q Consensus 124 ~~~~l~~~~~~i~~P~~~-~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~----~~-L~~------l 191 (338)
.++ +|++|++. ...+. .+.... ...++||+|+||... + +|.+|.++.+. ++ +.. .
T Consensus 114 ~~~-------gIptp~~~~~~~~~-~e~~~~--~~~~~~PvVVKP~~~--s-ggkGV~v~~~~~~~~~ea~~~~~~~~~~ 180 (435)
T PRK06395 114 ERH-------NIPGNINFNACFSE-KDAARD--YITSMKDVAVKPIGL--T-GGKGVKVTGEQLNSVDEAIRYAIEILDR 180 (435)
T ss_pred HHC-------CcCCCcccceeCCh-HHHHHH--HHhhCCCEEEEeCCC--C-CCCCeEEecCchhhHHHHHHHHHHHhCC
Confidence 975 89997544 44322 222221 234699999999663 3 67899988532 22 221 1
Q ss_pred CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCC-
Q 019600 192 EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP- 266 (338)
Q Consensus 192 ~~p~vvQeFI~h~g~~~KV~VI--Gd~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~- 266 (338)
..++++|||| .|..|-|.++ |+.++.. .+.--+.. .++...+. .. -++.++....-|. ++.
T Consensus 181 ~~~viIEEfl--~G~E~Svd~~~dg~~~~~l~~~~d~~r~~-~~d~gp~t-------Gg-mG~~s~~~~~~p~---l~~~ 246 (435)
T PRK06395 181 DGVVLIEKKM--TGEEFSLQAFSDGKHLSFMPIVQDYKRAY-EGDHGPNT-------GG-MGSISDRDFSLPF---LSKD 246 (435)
T ss_pred CCcEEEEeec--CCceEEEEEEEcCCeEEEecccceeeecc-cCCCCCcc-------CC-CccccCCCCCCCC---CCHH
Confidence 3579999999 4888876555 6665432 11000000 00000000 00 0111100000000 111
Q ss_pred -hHHHHHHHHHHHHHhCC------cEeEEEEEEeCCCCCeEEEEeccCCCCCC----CcccchHHHHHHHHHHHHh
Q 019600 267 -RPLLERLAKELRRQLGL------RLFNLDIIREHGTRDQFYVIDINYFPGYG----KMPEYEHIFTDFLLSLTQS 331 (338)
Q Consensus 267 -~~~~~~lA~~l~~~LGl------~l~GvDvi~~~~~g~~~~ViDVN~fPg~~----gv~~~~~~l~~~l~~~i~~ 331 (338)
.+.+++++.++.++||. .++.+++++++ .| ++|||+|.-+|=- =++.....|.+.+...+.+
T Consensus 247 ~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~-~g--p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g 319 (435)
T PRK06395 247 APERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP-NG--VKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG 319 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC-CC--cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC
Confidence 34568899999999994 45579999964 34 8999999888821 1133334566666666555
No 65
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.33 E-value=4.6e-12 Score=110.61 Aligned_cols=152 Identities=22% Similarity=0.336 Sum_probs=77.3
Q ss_pred hccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-
Q 019600 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL- 191 (338)
Q Consensus 113 l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l- 191 (338)
|.||+++++.|.++ +|++|.+...... ....+|+|+||..++ +|.++.++.+.+++...
T Consensus 1 ~~dK~~~~~~L~~~-------gi~~P~~~~~~~~----------~~~~~~~viKp~~G~---Gg~~i~~~~~~~~~~~~~ 60 (161)
T PF02655_consen 1 CSDKLKTYKFLKEL-------GIPVPTTLRDSEP----------EPIDGPWVIKPRDGA---GGEGIRIVDSEDELEEFL 60 (161)
T ss_dssp -TSHHHHHHHHTTT--------S--------EES----------S--SSSEEEEESS----------B--SS--TTE---
T ss_pred CCCHHHHHHHHHcc-------CCCCCCccccccc----------cccCCcEEEEeCCCC---CCCCeEEECCchhhcccc
Confidence 67999999999975 8999955443211 124789999999954 56789999999887754
Q ss_pred CCCeEEEecccCCCcEEEEEEECCE----EEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCCh
Q 019600 192 EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPR 267 (338)
Q Consensus 192 ~~p~vvQeFI~h~g~~~KV~VIGd~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~ 267 (338)
..-.++||||+ |.-+-+.++.+. +..+.|..+..- ...|.|. ++ .. +. ..+..
T Consensus 61 ~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~--------~~~~~~~----G~-~~-~~-------~~~~~ 117 (161)
T PF02655_consen 61 NKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGND--------DGRFRYC----GG-IV-PA-------DTPLK 117 (161)
T ss_dssp ----EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEEE----EE-EE-S-----------HH
T ss_pred ccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccc--------cceeeec----cc-cc-cc-------CCchH
Confidence 33349999994 999988888543 334444433110 0002111 11 00 11 11125
Q ss_pred HHHHHHHHHHHHHh-CCc-EeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 268 PLLERLAKELRRQL-GLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 268 ~~~~~lA~~l~~~L-Gl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
+.+.++|.+++++| ||. ++|||+|.++ + ++||||||-=|+
T Consensus 118 ~~~~~~~~~i~~~l~gl~G~~giD~I~~~--~-~~~viEINPR~t 159 (161)
T PF02655_consen 118 EEIIELARRIAEALPGLRGYVGIDFILDD--G-GPYVIEINPRFT 159 (161)
T ss_dssp HHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEESS--
T ss_pred HHHHHHHHHHHHHcCCCeeeEeEEEEEeC--C-cEEEEEEcCCCC
Confidence 67899999999999 876 4589999975 2 589999996543
No 66
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.30 E-value=2.2e-10 Score=127.31 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=117.5
Q ss_pred Ccee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCc-EEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcce
Q 019600 100 EVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 100 ~v~V-iDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~-~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
|+++ -.++++++.+.||..+-+.+.++ +||+|+ +.++. +.+++.+. ...++||+|+||..++ +|.
T Consensus 98 Gi~~iGps~ea~~~~~DK~~ar~ll~~~-------GVPt~p~~~lv~-s~dea~~~--a~~igyPvVVKP~~gg---GG~ 164 (1201)
T TIGR02712 98 GIVFVGPTPEQIRKFGLKHTARELAEAA-------GVPLLPGTGLLS-SLDEALEA--AKEIGYPVMLKSTAGG---GGI 164 (1201)
T ss_pred CCcEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeecC-CHHHHHHH--HHhcCCeEEEEECCCC---CCC
Confidence 6654 46689999999999999999875 899855 55554 22222222 3468999999998853 578
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEe-cCCCCCcccccCCCce
Q 019600 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSAGV 239 (338)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~-~R~-Slp~~~~~~~~~~~g~ 239 (338)
+|.++.++++|... +.++++||||. +++.+-|.+++| ++... .|. +... . +...
T Consensus 165 GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~qr---~----~~k~ 236 (1201)
T TIGR02712 165 GMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQR---R----NQKV 236 (1201)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeEe---c----CccE
Confidence 99999999887631 35799999997 468899988865 33332 221 1100 0 0000
Q ss_pred eeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 240 FRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 240 ~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
. .. .+. .+++. ..+.+.++|.++.++||+.-++ +|++++..+| ++||+|||.-++-.
T Consensus 237 v-----ee-----~Pap~l~~~-----~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 237 V-----EE-----TPAPNLPPE-----TRQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRLQVE 295 (1201)
T ss_pred E-----EE-----cCCCCCCHH-----HHHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCcCcc
Confidence 0 00 011 11111 1356889999999999987555 9999986444 69999999988643
No 67
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.27 E-value=4e-10 Score=109.11 Aligned_cols=184 Identities=20% Similarity=0.282 Sum_probs=130.2
Q ss_pred ccEEEEccCchhHHHHHHHHHHhCCCceee--ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhH
Q 019600 75 FDIVLHKLTGKEWRQILEEYRQTHPEVTVL--DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD 152 (338)
Q Consensus 75 ~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi--Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~ 152 (338)
.|+++.+...+...++-.+|.+. |+.|+ -+.++++.+.||..+++.+++. +|++|++..++ +.++...
T Consensus 67 Idv~~P~~~~~~l~~~r~~F~a~--Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~-------~ipvp~~~~v~-t~~el~~ 136 (329)
T PF15632_consen 67 IDVFVPGRNRELLAAHRDEFEAL--GVKLLTASSAETLELADDKAAFYEFMEAN-------GIPVPPYWRVR-TADELKA 136 (329)
T ss_pred CeEEEcCccHHHHHHHHHHHHHh--CCEEEecCCHHHHHHHhhHHHHHHHHHhC-------CCCCCCEEEeC-CHHHHHH
Confidence 45566665554445666677776 66554 4589999999999999999964 89999999995 3333333
Q ss_pred HHHhcCCCCc---EEEeeCCCCCCCcceeeEEEe-ChhhHhcc----------------------CCCeEEEecccCCCc
Q 019600 153 VVLKAGLTLP---LVAKPLVADGSAKSHELSLAY-DQYSLKKL----------------------EPPLVLQEFVNHGGV 206 (338)
Q Consensus 153 ~l~~~~l~fP---~VvKp~~a~Gs~~sh~m~iv~-~~~~L~~l----------------------~~p~vvQeFI~h~g~ 206 (338)
+ .+.+++| +.+||..+. ++.|..++. +.+.++.+ -+|++++||+ +|.
T Consensus 137 a--~~~l~~~~~~~CvKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL--~G~ 209 (329)
T PF15632_consen 137 A--YEELRFPGQPLCVKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYL--PGP 209 (329)
T ss_pred H--HHhcCCCCceEEEecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCC--CCC
Confidence 2 2346666 999999954 567888888 44444432 3579999999 599
Q ss_pred EEEEEEEC--CEEE-EEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC
Q 019600 207 LFKVYIVG--EAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL 283 (338)
Q Consensus 207 ~~KV~VIG--d~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl 283 (338)
.|.|=|+. +++. ++-|+-.. . ...+ -.++.+.++|.++++.+||
T Consensus 210 EySVD~l~~~G~viaaV~R~K~G-~-------------------------~q~l-------~~~~~l~e~a~~l~~~~~l 256 (329)
T PF15632_consen 210 EYSVDCLADEGRVIAAVPRRKLG-R-------------------------RQVL-------ENDEELIELARRLAEAFGL 256 (329)
T ss_pred eEEEEEEecCCEEEEEEEEEecC-c-------------------------eeEE-------EECHHHHHHHHHHHHHhCC
Confidence 99887774 4565 55665431 0 0000 0135679999999999999
Q ss_pred cE-eEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 284 RL-FNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 284 ~l-~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
+. +||++..|. +| .++++|||.=|+
T Consensus 257 ~g~~NiQ~r~d~-~g-~p~LLEINpR~s 282 (329)
T PF15632_consen 257 DGLFNIQFRYDE-DG-NPKLLEINPRPS 282 (329)
T ss_pred CceEEEEEEEcC-CC-CEEEEEeCCCCc
Confidence 75 589999875 45 689999999887
No 68
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.25 E-value=3.7e-10 Score=110.44 Aligned_cols=228 Identities=19% Similarity=0.269 Sum_probs=139.5
Q ss_pred HhhhhhcceEEEEeeCCCCCC-c-----------------------CCCccEEEEccCchhHHH---HHHH-HHHhCCCc
Q 019600 50 EGLARNKGILFVAIDQNRPLS-D-----------------------QGPFDIVLHKLTGKEWRQ---ILEE-YRQTHPEV 101 (338)
Q Consensus 50 ~~~~~~~gi~~~~id~~~~l~-~-----------------------qg~~DvilhK~~~~~~~~---~l~~-~~~~~p~v 101 (338)
..+.++.|+.++.||.+-... . ....|+||.=+..+.... .+.+ ...+.-||
T Consensus 22 c~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV 101 (400)
T COG0458 22 CKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGV 101 (400)
T ss_pred HHHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCC
Confidence 345677899999998875221 1 124688887776542211 1211 11111244
Q ss_pred -eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeE
Q 019600 102 -TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (338)
Q Consensus 102 -~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (338)
+|..++++|+.+.||+++.+.+.++ ++++|.. +.+ ..++..+ ....++||+|+||..+- ++.+..
T Consensus 102 ~vvgs~~eaI~iaeDr~~fke~m~ei-------gi~~P~~-~~~-~~~e~~~--~~~~ig~PvIVrP~~~l---GG~G~~ 167 (400)
T COG0458 102 EVVGSDPEAIEIAEDKKLFKEAMREI-------GIPVPSR-IAH-SVEEADE--IADEIGYPVIVKPSFGL---GGSGGG 167 (400)
T ss_pred EEEecCHHHhhhhhhHHHHHHHHHHc-------CCCCCcc-ccc-cHHHHhh--hHhhcCCCEEEecCcCC---CCCcee
Confidence 4689999999999999999999986 7999933 332 1122222 23568999999998854 566889
Q ss_pred EEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECCE---EEEEEEecCCCCCcccccCCCceeeecCcccc
Q 019600 181 LAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA 248 (338)
Q Consensus 181 iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~ 248 (338)
+++|+++|..+ -.+++++|+|. ++..|.+-|+-|. +.++ -+..|+.+..+.+.+.... +
T Consensus 168 i~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivv--c~men~dp~gvhtgdsi~v------a 238 (400)
T COG0458 168 IAYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVV--CNMENLDPMGVHTGDSITV------A 238 (400)
T ss_pred EEeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEE--EeCCccccccccccceeee------c
Confidence 99999998864 24689999996 4567766666432 1111 1222332222221110000 0
Q ss_pred cccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 249 AASADDADLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 249 ~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.+. ...+ .....++..+.++.+.||+.- .+|++.+++.+| +|||||||.-++
T Consensus 239 paq-tl~d--------~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 239 PAQ-TLTD--------KEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred ccc-cccc--------HHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 000 0000 012345668999999999981 129999988665 899999996665
No 69
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.14 E-value=8.9e-10 Score=110.55 Aligned_cols=178 Identities=16% Similarity=0.239 Sum_probs=116.5
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCChhHHHHhcCCCCcEEEeeCCCCCCCcc
Q 019600 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (338)
Q Consensus 99 p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (338)
.|+..+-| +++++++.||+.+-+++.+. |||+|+...-- .+.++..+ ....++||||+||..++ +|
T Consensus 98 ~gl~fiGP~~~~i~~mgdK~~ar~~~~~a-------GVP~vpgs~~~~~~~ee~~~--~a~~iGyPVivKa~~Gg---Gg 165 (449)
T COG0439 98 AGLTFIGPSAEAIRRMGDKITARRLMAKA-------GVPVVPGSDGAVADNEEALA--IAEEIGYPVIVKAAAGG---GG 165 (449)
T ss_pred cCCeeeCcCHHHHHHhhhHHHHHHHHHHc-------CCCcCCCCCCCcCCHHHHHH--HHHHcCCCEEEEECCCC---Cc
Confidence 46777776 46788888999999999875 88888876110 01112222 23467899999987743 57
Q ss_pred eeeEEEeChhhHhcc------------CCC-eEEEecccCCCcEEEEEEECCEE----EEEEEe-cCCCCCcccccCCCc
Q 019600 177 HELSLAYDQYSLKKL------------EPP-LVLQEFVNHGGVLFKVYIVGEAI----KVVRRF-SLPDVTKQDLSTSAG 238 (338)
Q Consensus 177 h~m~iv~~~~~L~~l------------~~p-~vvQeFI~h~g~~~KV~VIGd~v----~~~~R~-Slp~~~~~~~~~~~g 238 (338)
.||.+|.+.++|.+. ..| +++|+||+. .+-+=+-|+||.. ....|- |+.-. .
T Consensus 166 ~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcsiqrr-~-------- 235 (449)
T COG0439 166 RGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCSIQRR-H-------- 235 (449)
T ss_pred ccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCCCcCC-c--------
Confidence 899999999998752 344 999999983 4556788888864 233554 33210 0
Q ss_pred eeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
..+- ..+....++++. .+.+-+.|.++.+.+|-.-+| +.++.+. +| ++|++|+|.==+-.
T Consensus 236 ----qkvi---eeapsp~~~~e~-----r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN~Rlqve 296 (449)
T COG0439 236 ----QKVI---EEAPSPLLTEEL-----REKIGEAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMNTRLQVE 296 (449)
T ss_pred ----ccee---eecCCCCCCHHH-----HHHHHHHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEecccccC
Confidence 0000 000011111111 345677889999999888888 9999986 45 68999999754433
No 70
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.10 E-value=7.4e-10 Score=101.15 Aligned_cols=161 Identities=16% Similarity=0.278 Sum_probs=100.5
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc--
Q 019600 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (338)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-- 191 (338)
||....+++.++ ++|+|+..... .+.+++.+. ..+++||+++||..+. ++++|.+++++++|.+.
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~~~~~eea~~~--a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVPISSVEEALEF--AEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSSBSSHHHHHHH--HHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCCCCCHHHHHHH--HHhcCCceEEeecccc---cccccccccchhhhhhhhh
Confidence 788888888876 78888876541 122222222 2458999999998854 57899999999998752
Q ss_pred -----------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEec-CCCCCcccccCCCceeeecCcccccccCCCC
Q 019600 192 -----------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRFS-LPDVTKQDLSTSAGVFRFPRVSCAAASADDA 255 (338)
Q Consensus 192 -----------~~p~vvQeFI~h~g~~~KV~VIGd~---v~-~~~R~S-lp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~ 255 (338)
+.++++++|+. +.+.+-|=|++|. +. ...|-. .+- +.++ +- ..+...
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~-hs~d-------------si--~~~P~~ 131 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR-HSQD-------------SI--EEAPAQ 131 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE-TTEE-------------EE--EEES-S
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhccccceeeeeeecccccc-cccc-------------ce--eEeecc
Confidence 67999999997 4577888888762 22 334442 111 1111 00 000111
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCC
Q 019600 256 DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 256 ~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.+++.. .+.++++|.++++.||+.-.| |=++.+..++ ++||+|+|..-+
T Consensus 132 ~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 132 TLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp SS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred ccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 222211 356889999999999998877 9999986445 899999997765
No 71
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.07 E-value=3.9e-09 Score=93.91 Aligned_cols=164 Identities=14% Similarity=0.211 Sum_probs=99.5
Q ss_pred ChHHHHHHhccHH----HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeE
Q 019600 105 DPPYAIQHLHNRQ----SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (338)
Q Consensus 105 Dp~~ai~~l~dR~----~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (338)
|++.|+..+.||- .+.++-.+++ ...+|.=.+.... +-.++ ...-.||+|+| .|++- .+-|=.
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG----~e~FPLieQt~yp-nh~em-----~s~~~fPvVvK--vG~~h-~G~GKv 67 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLG----PEKFPLIEQTYYP-NHREM-----LSAPRFPVVVK--VGHAH-AGMGKV 67 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHH----TTTS-B---EEES-SGGGG-----CS-SSSSEEEE--ESS-S-TTTTEE
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhC----CcccccceeeecC-Chhhh-----ccCCCCCEEEE--Ecccc-CceeEE
Confidence 7889999999994 3333333342 2245543333331 11111 12358999999 55443 344555
Q ss_pred EEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecC-CCCCcccccCCCceeeecCcccccccC
Q 019600 181 LAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSL-PDVTKQDLSTSAGVFRFPRVSCAAASA 252 (338)
Q Consensus 181 iv~~~~~L~~l-------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Sl-p~~~~~~~~~~~g~~~~~~~s~~~~~~ 252 (338)
.|.|...+.++ +.-+-++-||+ .-.|++|--||+++.+..|+|+ .|| ++|.|.=-+
T Consensus 68 kv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~nW-----K~N~gsa~l---------- 131 (203)
T PF02750_consen 68 KVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISGNW-----KANTGSAML---------- 131 (203)
T ss_dssp EE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSSTS-----STTSSSEEE----------
T ss_pred EEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEccccccc-----cccccchhe----------
Confidence 99999887764 55678889996 4789999999999999999997 354 444331111
Q ss_pred CCCCCCccccCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEeccCC
Q 019600 253 DDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINYF 308 (338)
Q Consensus 253 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~L-Gl~l~GvDvi~~~~~g~~~~ViDVN~f 308 (338)
.+.+..+..+.-..++.+.+ ||+++++|.|... +| +.||+|||..
T Consensus 132 ---------Eqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnds 177 (203)
T PF02750_consen 132 ---------EQIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVNDS 177 (203)
T ss_dssp ---------EEE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-T
T ss_pred ---------eecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecCC
Confidence 12223455688888999999 9999999999986 67 6799999976
No 72
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.05 E-value=1.8e-08 Score=102.66 Aligned_cols=135 Identities=15% Similarity=0.193 Sum_probs=90.5
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHH
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~ 124 (338)
...+++.|++.+++++.+.++.++ .+-+.+..++ -|++++ .+.++.+.+.||..|-+.|.
T Consensus 58 ~~~l~~~a~~~~id~Vi~g~E~~l------------------~~glad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~ 118 (486)
T PRK05784 58 PEEVKKVAKEVNPDLVVIGPEEPL------------------FAGVADVLRE-EGFPVFGASSKCARIEKSKVWARELMW 118 (486)
T ss_pred HHHHHHHHHHhCCCEEEECCchHH------------------HHHHHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHH
Confidence 345788888888777776544322 1222222222 477765 78899999999999999998
Q ss_pred hccccCCCCCccCC-cEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhh---------H----hc
Q 019600 125 DMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS---------L----KK 190 (338)
Q Consensus 125 ~~~l~~~~~~i~~P-~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~---------L----~~ 190 (338)
++ +||+| ++..+. +.+++.+.+ .. .+|+|+||... ++|.+|.++.+.++ + ..
T Consensus 119 ~~-------gIpt~~~~~~~~-~~~ea~~~~--~~-~~PvVVKP~~~---aggkGV~iv~~~~e~~~~~~~ea~~~a~~~ 184 (486)
T PRK05784 119 KY-------SIPGRLRYKVFY-DVEEAAKFI--EY-GGSVAIKPARQ---AGGKGVKVIADLQAYLSQEKREALTKSVND 184 (486)
T ss_pred Hc-------CcCCCccceEeC-CHHHHHHHH--hh-cCCEEEeeCCC---CCCCCEEEECChhHhcchhHHHHHHHHHHH
Confidence 65 89997 676664 332333322 22 36999998663 36889999998652 1 11
Q ss_pred ----------cCCCeEEEecccCCCcEEEEEEECC
Q 019600 191 ----------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (338)
Q Consensus 191 ----------l~~p~vvQeFI~h~g~~~KV~VIGd 215 (338)
.+.++|+||||. |..|-|.++.|
T Consensus 185 ~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 185 IKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred HHHhHhhccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 135799999995 89998888743
No 73
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.04 E-value=1.4e-08 Score=96.22 Aligned_cols=228 Identities=16% Similarity=0.220 Sum_probs=141.3
Q ss_pred HHHhhhhhcceEEEEeeCCC--CCCc---------------------CCCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019600 48 KLEGLARNKGILFVAIDQNR--PLSD---------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (338)
Q Consensus 48 ~l~~~~~~~gi~~~~id~~~--~l~~---------------------qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi 104 (338)
++.-.|.++|++++.+|-=. |-.. +...|.|+.-+-. .....|.++.++ |..||
T Consensus 26 EvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEA-I~td~L~elE~~--G~~VV 102 (394)
T COG0027 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEA-IATDALVELEEE--GYTVV 102 (394)
T ss_pred HHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhh-hhHHHHHHHHhC--CceEc
Confidence 45557788999999999733 2111 1133444433211 233456666655 88899
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeC
Q 019600 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (338)
Q Consensus 105 Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (338)
=...+.+.++||...-++.++- -++||-++...++ .++..+ ....++||+||||+.+ | -+||=+++.+
T Consensus 103 P~ArAt~ltMnRegiRrlAAee------LglpTs~Y~fa~s-~~e~~~--a~~~iGfPcvvKPvMS--S-SGkGqsvv~~ 170 (394)
T COG0027 103 PNARATKLTMNREGIRRLAAEE------LGLPTSKYRFADS-LEELRA--AVEKIGFPCVVKPVMS--S-SGKGQSVVRS 170 (394)
T ss_pred cchHHHHhhhcHHHHHHHHHHH------hCCCCcccccccc-HHHHHH--HHHHcCCCeecccccc--c-CCCCceeecC
Confidence 9999999999999865555441 2788888877742 222333 2457999999999992 3 5899999999
Q ss_pred hhhHhcc-----------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCC--CC--cccccCCCceeeecCccccc
Q 019600 185 QYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPD--VT--KQDLSTSAGVFRFPRVSCAA 249 (338)
Q Consensus 185 ~~~L~~l-----------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~--~~--~~~~~~~~g~~~~~~~s~~~ 249 (338)
++++... +.-+++++||+- ||-+-.+ ..|..-++ |- .+- ...+|.| +. |
T Consensus 171 ~e~ve~AW~~A~~g~R~~~~RVIVE~fv~f---d~EiTlL------tvr~~~~~~~Fc~PIGH-rq~dgdY--~E-S--- 234 (394)
T COG0027 171 PEDVEKAWEYAQQGGRGGSGRVIVEEFVKF---DFEITLL------TVRAVDGTGSFCAPIGH-RQEDGDY--RE-S--- 234 (394)
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEecc---eEEEEEE------EEEEecCCCCcCCCccc-ccCCCCh--hc-c---
Confidence 9988753 456999999963 4433222 11111111 10 000 0011111 00 0
Q ss_pred ccCCCCCCCccccCCCChHHHHHHHHHHHHHhC-CcEeEEEEEEeCCCCCeEEEEeccCCCCCCCccc
Q 019600 250 ASADDADLDPCVAELPPRPLLERLAKELRRQLG-LRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 316 (338)
Q Consensus 250 ~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LG-l~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 316 (338)
=++..+++.. .+..+.+|+++.++|| ..+|||.+.+. ||+.++-||---|.=+|+--
T Consensus 235 --WQP~~mS~~a-----l~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDTGmVT 292 (394)
T COG0027 235 --WQPQEMSEAA-----LEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDTGMVT 292 (394)
T ss_pred --cCccccCHHH-----HHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCCceEE
Confidence 0111111111 2356889999999996 68999999985 56899999999998776643
No 74
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.97 E-value=4.1e-09 Score=93.29 Aligned_cols=135 Identities=24% Similarity=0.344 Sum_probs=71.3
Q ss_pred cCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeCh-hhHhc--------cCCCeEEEecccC--C
Q 019600 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSLKK--------LEPPLVLQEFVNH--G 204 (338)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~-~~L~~--------l~~p~vvQeFI~h--~ 204 (338)
.+|+|++.. +.+.+.+.+...+ -+|+||+.+.| +.++..+... ..+.. ...|+++|+|++. +
T Consensus 11 ~~P~T~vs~-~~~~i~~f~~~~~---~~VlKPl~g~g---G~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 11 LIPPTLVSR-DKEEIRAFIEEHG---DIVLKPLDGMG---GRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp CS--EEEES--HHHHHHHHHHHS---SEEEEESS--T---TTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG
T ss_pred cCcCEEEEC-CHHHHHHHHHHCC---CEEEEECCCCC---CcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccC
Confidence 469998874 4444555555544 39999999654 5677777763 22221 2568999999985 3
Q ss_pred CcEEEEEEECCEEEEE-EEecC-CCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-
Q 019600 205 GVLFKVYIVGEAIKVV-RRFSL-PDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL- 281 (338)
Q Consensus 205 g~~~KV~VIGd~v~~~-~R~Sl-p~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L- 281 (338)
| |.|+++++++...+ .|.+. .+|+.|. .. |....... + .+...++|.++...|
T Consensus 84 G-DkRii~~nG~~~~av~R~P~~gd~R~N~-------------~~-Gg~~~~~~-------l--t~~e~~i~~~i~~~L~ 139 (173)
T PF02955_consen 84 G-DKRIILFNGEPSHAVRRIPAKGDFRSNL-------------AA-GGSAEPAE-------L--TEREREICEQIGPKLR 139 (173)
T ss_dssp --EEEEEEETTEE-SEEEEE--SS-S---G-------------GG-TSCEEEEE-----------HHHHHHHHHHHHHHH
T ss_pred C-CEEEEEECCEEhHHeecCCCCCCceeee-------------cc-CCceeecC-------C--CHHHHHHHHHHHHHHh
Confidence 4 89999999987755 44332 2333321 11 11111111 2 233467777776665
Q ss_pred --CCcEeEEEEEEeCCCCCeEEEEeccCC
Q 019600 282 --GLRLFNLDIIREHGTRDQFYVIDINYF 308 (338)
Q Consensus 282 --Gl~l~GvDvi~~~~~g~~~~ViDVN~f 308 (338)
|+-++|+|+| |+ ++.|||.+
T Consensus 140 ~~Gl~f~GiDvi-----g~--~l~EiNvt 161 (173)
T PF02955_consen 140 EDGLLFVGIDVI-----GD--KLTEINVT 161 (173)
T ss_dssp HTT--EEEEEEE-----TT--EEEEEE-S
T ss_pred hcCcEEEEEecc-----cc--ceEEEecc
Confidence 8999999999 32 58899965
No 75
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.89 E-value=6e-08 Score=89.51 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=93.1
Q ss_pred hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeCh
Q 019600 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (338)
Q Consensus 106 p~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 185 (338)
+++||+.|-||+.++..|.+ .+++|.|..+- ...--+|+||..+||+ .++....+.
T Consensus 105 S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~-------------~~~~k~ViKp~dgCgg---e~i~~~~~~ 160 (307)
T COG1821 105 SPRAIRVAADKRLTYKALRD--------AVKQPPTREWA-------------EEPKKYVIKPADGCGG---EGILFGRDF 160 (307)
T ss_pred CHHHHhHhhhHHHHHHHHhh--------hccCCCccccc-------------cCCceEEecccccCCc---ceeeccCCC
Confidence 68999999999999999985 38899886431 1222689999999876 233333332
Q ss_pred hhHhccCCCeEEEecccCCCcEEEEE-EECCEEEEEEEecCCCCCcccccCCCcee-eecCcccccccCCCCCCCccccC
Q 019600 186 YSLKKLEPPLVLQEFVNHGGVLFKVY-IVGEAIKVVRRFSLPDVTKQDLSTSAGVF-RFPRVSCAAASADDADLDPCVAE 263 (338)
Q Consensus 186 ~~L~~l~~p~vvQeFI~h~g~~~KV~-VIGd~v~~~~R~Slp~~~~~~~~~~~g~~-~~~~~s~~~~~~~~~~~~~~~~~ 263 (338)
.. -+++||||+ |.-+.|- .+|+++..- +.|+ +.-.| .+...+.++ .+..+
T Consensus 161 pd------~~i~qEfIe--G~~lSVSL~~GEkv~pL--------svNr---Qfi~~~~~~~~y~gg----~~pi~----- 212 (307)
T COG1821 161 PD------IEIAQEFIE--GEHLSVSLSVGEKVLPL--------SVNR---QFIIFAGSELVYNGG----RTPID----- 212 (307)
T ss_pred cc------hhhHHHhcC--CcceEEEEecCCccccc--------eech---hhhhhccceeeeccC----cCCCC-----
Confidence 22 289999996 5555554 457755421 1111 10011 111122222 12211
Q ss_pred CCChHHHHHHHHHHHHHhC-C-cEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 264 LPPRPLLERLAKELRRQLG-L-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 264 ~p~~~~~~~lA~~l~~~LG-l-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.+..+.+.+.|.++.+.++ | .++|||++..+ .+||||||.-|.
T Consensus 213 he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvIEINpR~T 257 (307)
T COG1821 213 HELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVIEINPRPT 257 (307)
T ss_pred cHHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEEEecCCCC
Confidence 1224556788888888887 4 56799999862 489999999887
No 76
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.89 E-value=4.7e-08 Score=92.11 Aligned_cols=189 Identities=15% Similarity=0.248 Sum_probs=114.1
Q ss_pred HHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCC
Q 019600 95 RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (338)
Q Consensus 95 ~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (338)
.+++++++++|| ...||+.+++.|.+.. .-.=-.|.|..+. +.+++.+.|...+ -+++||.. ||
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~----~l~~~LP~T~~~~-~~~~l~~~L~~y~---~vylKP~~--Gs- 66 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDP----ELRPYLPETELLT-SFEDLREMLNKYK---SVYLKPDN--GS- 66 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCC----cchhhCCCceEcC-CHHHHHHHHHHCC---EEEEEeCC--CC-
Confidence 356789999998 4589999999998631 1122489998885 3234555454444 78999988 44
Q ss_pred cceeeEEEeChhh----------------------Hhc-----c-CCCeEEEecccC---C--CcEEEEEEECC---EEE
Q 019600 175 KSHELSLAYDQYS----------------------LKK-----L-EPPLVLQEFVNH---G--GVLFKVYIVGE---AIK 218 (338)
Q Consensus 175 ~sh~m~iv~~~~~----------------------L~~-----l-~~p~vvQeFI~h---~--g~~~KV~VIGd---~v~ 218 (338)
.+.++..|...++ |.. + +.++++|+.|+- + -.||||.|--+ .|.
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 4555554443321 111 1 458999999984 3 45889999932 344
Q ss_pred E---EEEecCCC-CCcccccCCCceeeecCcccccccCCCCCCCccccCC----CChHHH----HHHHHHHHHHhCC--c
Q 019600 219 V---VRRFSLPD-VTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAEL----PPRPLL----ERLAKELRRQLGL--R 284 (338)
Q Consensus 219 ~---~~R~Slp~-~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~----p~~~~~----~~lA~~l~~~LGl--~ 284 (338)
+ +.|.+.++ +.+| ++.+|... .+++..... ...+.+ ..+|..+.+.+|. .
T Consensus 147 vtg~~~Rva~~~~ivTN-------------~~~GG~~~---~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~g 210 (262)
T PF14398_consen 147 VTGIVARVAKPGSIVTN-------------LSQGGTAL---PFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLG 210 (262)
T ss_pred EEEEEEEEcCCCCceec-------------cCCCceec---CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 3 47776544 2221 12111100 000000000 011233 4455666666774 6
Q ss_pred EeEEEEEEeCCCCCeEEEEeccCCCCCCCcccc
Q 019600 285 LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 317 (338)
Q Consensus 285 l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 317 (338)
-+|+|+.+|. +| ++++||||.-||-....+.
T Consensus 211 ElGiDl~iD~-~g-~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 211 ELGIDLGIDK-NG-KIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred EEEEEEEEcC-CC-CEEEEEEeCCCCcchhhcc
Confidence 6799999996 56 7999999999997766664
No 77
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.85 E-value=3.7e-07 Score=88.71 Aligned_cols=225 Identities=17% Similarity=0.170 Sum_probs=142.2
Q ss_pred HHhhhhhcceEEEEeeCCCCCCc-CCCccEEEEccCch------------------hHHHHHHHHHHhCCCceeeChHHH
Q 019600 49 LEGLARNKGILFVAIDQNRPLSD-QGPFDIVLHKLTGK------------------EWRQILEEYRQTHPEVTVLDPPYA 109 (338)
Q Consensus 49 l~~~~~~~gi~~~~id~~~~l~~-qg~~DvilhK~~~~------------------~~~~~l~~~~~~~p~v~ViDp~~a 109 (338)
+..+|..+|+.+..+|++..=+- |---+.|..-..|. .+-...-++...+ +.|-=++++
T Consensus 16 m~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~ 93 (375)
T COG0026 16 MALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDA 93 (375)
T ss_pred HHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHH
Confidence 55688899999999998763221 21112333322221 1112222333332 567778999
Q ss_pred HHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHh
Q 019600 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (338)
Q Consensus 110 i~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~ 189 (338)
++...||+..-+.|.++ |++||+|.++++ .+++...+ ..++||.|+|...+ |= .++|-.++.+.+++.
T Consensus 94 l~~~qdR~~eK~~l~~~-------Gi~va~~~~v~~-~~el~~~~--~~~g~p~VlKtr~g-GY-DGkGQ~~i~~~~~~~ 161 (375)
T COG0026 94 LRIAQDRLVEKQFLDKA-------GLPVAPFQVVDS-AEELDAAA--ADLGFPAVLKTRRG-GY-DGKGQWRIRSDADLE 161 (375)
T ss_pred HHHHhhHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHH--HHcCCceEEEeccc-cc-cCCCeEEeeCcccch
Confidence 99999999999999875 899999999963 33455433 45889999998874 44 788999999887655
Q ss_pred c-------cCCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCc
Q 019600 190 K-------LEPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 259 (338)
Q Consensus 190 ~-------l~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 259 (338)
. ...| |+++||+- .+.+.|.++-+ .+.++ +-.-|+. .+|++.++- -++.+++
T Consensus 162 ~~~~~~~~~~~~-vlE~fV~F-~~EiSvi~aR~~~G~~~~y--P~~eN~h------~~gIl~~si--------aPa~i~~ 223 (375)
T COG0026 162 LRAAGLAEGGVP-VLEEFVPF-EREISVIVARSNDGEVAFY--PVAENVH------RNGILRTSI--------APARIPD 223 (375)
T ss_pred hhHhhhhccCce-eEEeeccc-ceEEEEEEEEcCCCCEEEe--cccceee------ecCEEEEEE--------ecCcCCH
Confidence 4 1334 99999985 44667776622 12211 2111221 123332211 1222222
Q ss_pred cccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 260 CVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 260 ~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
. ..+..+++|.++.+.|+. ..+||-+.+.. +| +++|.|+=--|.=.
T Consensus 224 ~-----~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg-~llvNEiAPRvHNS 270 (375)
T COG0026 224 D-----LQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DG-ELLVNEIAPRVHNS 270 (375)
T ss_pred H-----HHHHHHHHHHHHHHHcCceEEEEEEEEEEC-CC-cEEEeeccCCCCCc
Confidence 1 135678999999999986 56789988875 34 79999997766533
No 78
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.83 E-value=2.2e-08 Score=88.64 Aligned_cols=152 Identities=16% Similarity=0.242 Sum_probs=93.5
Q ss_pred CccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEE
Q 019600 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLF 208 (338)
Q Consensus 134 ~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~g~~~ 208 (338)
+||+|++..+.+ .+++.+.+ ..++||+|+|+..+ |. .++|..++.+.+++... ..++++|+||+. .+.+
T Consensus 5 gip~~~~~~i~~-~~~l~~a~--~~iG~P~vlK~~~~-GY-DGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~Ei 78 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEAA--ESIGFPAVLKTRRG-GY-DGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DREI 78 (172)
T ss_dssp T--B-EEEEESS-HHHHHHHH--HHHTSSEEEEESSS-SC-TTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SEEE
T ss_pred CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEccCc-Cc-CCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cEEE
Confidence 899999999953 33444433 45899999998874 34 68999999999988763 679999999984 5677
Q ss_pred EEEEECC---EEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-c
Q 019600 209 KVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-R 284 (338)
Q Consensus 209 KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~ 284 (338)
-|.|+.+ ++.++ +..-|.. .+|++... -.++.+++.+ ..+++++|.++.+.|+. .
T Consensus 79 SvivaR~~~G~~~~y--p~~en~~------~~~il~~s--------~~Pa~i~~~~-----~~~a~~ia~~i~~~l~~vG 137 (172)
T PF02222_consen 79 SVIVARDQDGEIRFY--PPVENVH------RDGILHES--------IAPARISDEV-----EEEAKEIARKIAEALDYVG 137 (172)
T ss_dssp EEEEEEETTSEEEEE--EEEEEEE------ETTEEEEE--------EESCSS-HHH-----HHHHHHHHHHHHHHHTSSE
T ss_pred EEEEEEcCCCCEEEE--cCceEEE------ECCEEEEE--------ECCCCCCHHH-----HHHHHHHHHHHHHHcCcEE
Confidence 7777732 11111 1101111 11222211 1133343332 45688999999999975 5
Q ss_pred EeEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 285 LFNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 285 l~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
+|+|.+.+.. +|++.||.||-.-|.-.|
T Consensus 138 v~~VE~Fv~~-~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 138 VLAVEFFVTK-DGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp EEEEEEEEET-TSTEEEEEEEESS--GGG
T ss_pred EEEEEEEEec-CCCEEEEEeccCCccCcc
Confidence 7789999985 564599999987665443
No 79
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.78 E-value=4.8e-07 Score=86.38 Aligned_cols=220 Identities=20% Similarity=0.206 Sum_probs=132.0
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEcc----------CchhHH-HHHHHHHHhC--------------
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKL----------TGKEWR-QILEEYRQTH-------------- 98 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~----------~~~~~~-~~l~~~~~~~-------------- 98 (338)
++.+-+.+.|.+.|.++--++.=.|..-++..+.++--- .+++|. ..+.++..+.
T Consensus 19 vntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~ 98 (389)
T COG2232 19 VNTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALR 98 (389)
T ss_pred ecchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeecccccccc
Confidence 345558889999999998888776665566556555221 123442 2333333211
Q ss_pred ------CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCC
Q 019600 99 ------PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (338)
Q Consensus 99 ------p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 172 (338)
-++.=-+|-..+..+-||...+..|..+ +++.|...-++ .+ ..-..++|.||+.|.|
T Consensus 99 ~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~e--------~~--~~gekt~IlKPv~GaG 161 (389)
T COG2232 99 TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKIE--------PL--EEGEKTLILKPVSGAG 161 (389)
T ss_pred ccCccccccccCCcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhhh--------hh--hhcceeeEEeeccCCC
Confidence 0112225666999999999999999876 67777543221 11 1134599999999765
Q ss_pred CCcceeeEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECC----EEEEEEEecCCCCCcccccCCCceeeecCcccc
Q 019600 173 SAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA 248 (338)
Q Consensus 173 s~~sh~m~iv~~~~~L~~l~~p~vvQeFI~h~g~~~KV~VIGd----~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~ 248 (338)
. + .-++.-.++.. ..++++|||| .|+-+.|-+|++ ...++-+.-+ ++..+ ..+.|.| ++
T Consensus 162 G--~--~el~~~~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI-~~~~~----~~~~f~Y----~G 224 (389)
T COG2232 162 G--L--VELVKFDEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQII-DGLRG----EYSQFVY----KG 224 (389)
T ss_pred c--e--eeecccccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeee-ccccc----cccccee----cc
Confidence 3 2 33332222322 3789999999 599999999988 3333433322 11111 1122222 11
Q ss_pred cccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEeccCCC
Q 019600 249 AASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFP 309 (338)
Q Consensus 249 ~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~-GvDvi~~~~~g~~~~ViDVN~fP 309 (338)
.+.|-..+ ..+++++||..+-..|||--- |||++..+ .| +||||||--+
T Consensus 225 -------NlTP~~~~--~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~g--pyViEVNPR~ 274 (389)
T COG2232 225 -------NLTPFPYE--EVEEAERLAEELVEELGLVGSNGVDFVLND-KG--PYVIEVNPRI 274 (389)
T ss_pred -------CcCCCcch--hhHHHHHHHHHHHHHhccccccccceEeec-CC--cEEEEecCcc
Confidence 11111101 125679999999999998655 79999975 34 8999999433
No 80
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.76 E-value=1.6e-06 Score=82.71 Aligned_cols=196 Identities=20% Similarity=0.221 Sum_probs=116.0
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-ecC------CCChhHH--HHhcCCCCcEEEeeCCCCCCCc
Q 019600 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERD------ASSIPDV--VLKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 105 Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~-~~~------~~~~~~~--l~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
||.+....+.||..+.+++.+. +|++|+.+.. .++ ..+..+. +.......++|+||.. || +
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~-------gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~--G~-~ 85 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDY-------GIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPAN--GS-G 85 (285)
T ss_pred CchhhccccCCHHHHHHHHHHh-------cCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCC--CC-C
Confidence 8899999999999999999875 8999994331 110 1111111 1222234799999976 55 6
Q ss_pred ceeeEEEeChhh---------Hhc----cC-CCeEEEeccc-CC---------CcEEEEEEE-C-C--EEE-EEEEecCC
Q 019600 176 SHELSLAYDQYS---------LKK----LE-PPLVLQEFVN-HG---------GVLFKVYIV-G-E--AIK-VVRRFSLP 226 (338)
Q Consensus 176 sh~m~iv~~~~~---------L~~----l~-~p~vvQeFI~-h~---------g~~~KV~VI-G-d--~v~-~~~R~Slp 226 (338)
++|+.++...++ +.+ +. ..+++||+|. |+ =..+||.++ . + ++. ++.|-+-.
T Consensus 86 G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~ 165 (285)
T PF14397_consen 86 GKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRG 165 (285)
T ss_pred ccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCC
Confidence 888888776652 111 11 2799999997 32 246798877 3 2 233 44665422
Q ss_pred CCCcccccCCCcee---eecCccccc--ccCCCCC--CCccc------cCCCChHHHHHHHHHHHHHh-CCcEeEEEEEE
Q 019600 227 DVTKQDLSTSAGVF---RFPRVSCAA--ASADDAD--LDPCV------AELPPRPLLERLAKELRRQL-GLRLFNLDIIR 292 (338)
Q Consensus 227 ~~~~~~~~~~~g~~---~~~~~s~~~--~~~~~~~--~~~~~------~~~p~~~~~~~lA~~l~~~L-Gl~l~GvDvi~ 292 (338)
......+.. .|.. +..+.-... ....... ..|.. ...|.-+++.++|.++++.+ ++.+.|.||.+
T Consensus 166 ~~~~DN~~~-Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvai 244 (285)
T PF14397_consen 166 GSGVDNFHQ-GGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAI 244 (285)
T ss_pred CCcccccCC-CCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEE
Confidence 111111111 1221 211110000 0001111 12221 24666667899999988665 89999999999
Q ss_pred eCCCCCeEEEEeccCC--CCCCCc
Q 019600 293 EHGTRDQFYVIDINYF--PGYGKM 314 (338)
Q Consensus 293 ~~~~g~~~~ViDVN~f--Pg~~gv 314 (338)
++ +| +++||.|+. ||+.-.
T Consensus 245 t~-~G--p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 245 TE-DG--PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred cC-CC--cEEEEeeCCCCCCcHhh
Confidence 86 45 899999999 998743
No 81
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.68 E-value=6.6e-07 Score=89.44 Aligned_cols=174 Identities=17% Similarity=0.303 Sum_probs=114.1
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccC-CcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcc
Q 019600 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (338)
Q Consensus 99 p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~-P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (338)
.|+..|-| +.+|+-..||...-+++... ++|+ |-+--...+.+.+.+ ....++||+++|+..|+ ++
T Consensus 94 ~Gi~FiGP~~~aIrdMG~K~~sk~im~~A-------gVp~vpG~~g~~qs~e~~~~--~a~eIgyPvMiKa~~GG---GG 161 (670)
T KOG0238|consen 94 AGITFIGPPPSAIRDMGDKSTSKQIMKAA-------GVPLVPGYHGEDQSDEEAKK--VAREIGYPVMIKATAGG---GG 161 (670)
T ss_pred cCCeEECCCHHHHHHhcchHHHHHHHHhc-------CCccccCcccccccHHHHHH--HHHhcCCcEEEEeccCC---CC
Confidence 57888876 46788899999988888764 6664 333222111112222 24679999999988754 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCEEE----EEEEe-cCCCCCcccccCCCc
Q 019600 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEAIK----VVRRF-SLPDVTKQDLSTSAG 238 (338)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~v~----~~~R~-Slp~~~~~~~~~~~g 238 (338)
.+|.++.+++++.+. +..++++.||. +.|-+-|-|.||+.- .-+|- |+ ...
T Consensus 162 kGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-npRHiEvQv~gD~hGnav~l~ERdCSv--------QRR-- 230 (670)
T KOG0238|consen 162 KGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NPRHIEVQVFGDKHGNAVHLGERDCSV--------QRR-- 230 (670)
T ss_pred cceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CCceEEEEEEecCCCcEEEecccccch--------hhh--
Confidence 899999999887642 56799999998 567778888888633 11222 11 000
Q ss_pred eeeecCcccccccCCCCCCCccccCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCC
Q 019600 239 VFRFPRVSCAAASADDADLDPCVAELPP--RPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~--~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg 310 (338)
++ .-- ..+ ++ | .++. ...+.+.|+++++++|-.-+| |.+|.|.+ + .+|++|.|.-=.
T Consensus 231 ----nQ-Kii-EEa-Pa---p---~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~-~-~FyFmEmNTRLQ 290 (670)
T KOG0238|consen 231 ----NQ-KII-EEA-PA---P---NLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSK-D-NFYFMEMNTRLQ 290 (670)
T ss_pred ----hh-hhh-hcC-CC---C---CCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCC-C-cEEEEEeeceee
Confidence 00 000 000 00 1 1111 335788999999999999999 99999974 4 699999997533
No 82
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.64 E-value=1.3e-06 Score=85.92 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCccee
Q 019600 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 99 p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
-++++.=..++++...||..+-+.|.++ ||++|+++ . +. ..+.||+|+||.. |+ ++++
T Consensus 107 ~~~p~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~---------~~i~~PvIVKp~~--g~-ggkG 164 (358)
T PRK13278 107 FKVPMFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP---------EDIDRPVIVKLPG--AK-GGRG 164 (358)
T ss_pred CCCCcCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH---------HHcCCCEEEEeCC--CC-CCCC
Confidence 3456656777899999999999999875 89999973 2 11 1257999999954 43 6899
Q ss_pred eEEEeChhhHhcc------------CCCeEEEecccCCCcEEE--EEEE
Q 019600 179 LSLAYDQYSLKKL------------EPPLVLQEFVNHGGVLFK--VYIV 213 (338)
Q Consensus 179 m~iv~~~~~L~~l------------~~p~vvQeFI~h~g~~~K--V~VI 213 (338)
+.++.+++++.+. ...+++||||. |..|- +|+.
T Consensus 165 v~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~--G~e~sv~~f~s 211 (358)
T PRK13278 165 YFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV--GVPYYFHYFYS 211 (358)
T ss_pred eEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC--CcEEEEEEEEe
Confidence 9999999887541 46799999995 76664 4554
No 83
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.62 E-value=2.1e-07 Score=87.66 Aligned_cols=171 Identities=16% Similarity=0.192 Sum_probs=104.1
Q ss_pred eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCC-Ccc-eeeE
Q 019600 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS-AKS-HELS 180 (338)
Q Consensus 103 ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs-~~s-h~m~ 180 (338)
++=+....+-+.+|=.+|..-.++ ++++|+|+.+++..+ . .-..|.||+|+||-.+.|. ..+ -+..
T Consensus 102 ~lp~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d-~----~~~el~FPvILKP~mgg~~~~~araKa~ 169 (415)
T COG3919 102 PLPDWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEID-T----LVDELTFPVILKPGMGGSVHFEARAKAF 169 (415)
T ss_pred CCCcHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhh-h----hhhheeeeEEecCCCCCcceeehhhhee
Confidence 444566777778888888888776 899999999974321 1 2346999999999885432 111 1234
Q ss_pred EEeChhhHhcc---------CCCeEEEecccCCCcEEEE---EEECCEEE--EEEEecCCCCCcccccCCCceeeecCcc
Q 019600 181 LAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKV---YIVGEAIK--VVRRFSLPDVTKQDLSTSAGVFRFPRVS 246 (338)
Q Consensus 181 iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV---~VIGd~v~--~~~R~Slp~~~~~~~~~~~g~~~~~~~s 246 (338)
.+.+.++++.. ...+|+||||+.+|---.+ ++--++-+ +..|+..- |+
T Consensus 170 ~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rq-------------yP----- 231 (415)
T COG3919 170 TAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQ-------------YP----- 231 (415)
T ss_pred eccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhc-------------CC-----
Confidence 45555666542 4469999999976543332 22222211 11233210 00
Q ss_pred cccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 247 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.+........+.++...+-+.|+++-+..+-+ |..||+..|..+| .|-++|||--|+
T Consensus 232 ------vdfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw 289 (415)
T COG3919 232 ------VDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPW 289 (415)
T ss_pred ------cccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCC-ceeEEeecCCCc
Confidence 00111112345555555566666666666554 4469999998888 799999999997
No 84
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.57 E-value=3.3e-06 Score=83.41 Aligned_cols=235 Identities=17% Similarity=0.276 Sum_probs=145.4
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHh-ccHHHHHHHHH
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHL-HNRQSMLQCVA 124 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l-~dR~~~~~~L~ 124 (338)
-..++++|++.+++++.|-++.||.. -....|.++ |++|.=|.....++ .+|..+-..++
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE~pL~~-----------------GvvD~l~~~--Gi~vFGPsk~AA~lE~SK~faK~fm~ 112 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPEAPLVA-----------------GVVDALRAA--GIPVFGPTKAAAQLEGSKAFAKDFMK 112 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCcHHHhh-----------------hhHHHHHHC--CCceeCcCHHHHHHHhhHHHHHHHHH
Confidence 35699999999999999999998752 233345555 99999998766555 56777888888
Q ss_pred hccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------------
Q 019600 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------- 191 (338)
Q Consensus 125 ~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------- 191 (338)
+. +||++.+-+++ +.+.+...+. ..+.|+|+| ++|-+.+.++.|+.+.++..+.
T Consensus 113 k~-------~IPta~y~~f~-~~e~a~ayi~--~~g~piVVK---adGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~ 179 (428)
T COG0151 113 KY-------GIPTAEYEVFT-DPEEAKAYID--EKGAPIVVK---ADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSA 179 (428)
T ss_pred Hc-------CCCcccccccC-CHHHHHHHHH--HcCCCEEEe---cccccCCCCeEEcCCHHHHHHHHHHHHhhccccCC
Confidence 64 89999998886 4444555443 478999999 5667778899999998664431
Q ss_pred CCCeEEEecccCCCcEEEEEEE--CCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCC---
Q 019600 192 EPPLVLQEFVNHGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP--- 266 (338)
Q Consensus 192 ~~p~vvQeFI~h~g~~~KV~VI--Gd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~--- 266 (338)
...+|++||+ .|..+.++++ |+.+.- +|-. .+-+. .|+=+ ++.++.-...++|.. -+++
T Consensus 180 g~~VVIEEfL--~GeE~S~~a~~DG~~v~p-----~p~a--QDhKr---a~dgD---~GPNTGGMGaysp~P-~~t~e~~ 243 (428)
T COG0151 180 GARVVIEEFL--DGEEFSLQAFVDGKTVIP-----MPTA--QDHKR---AYDGD---TGPNTGGMGAYSPAP-FITDEVV 243 (428)
T ss_pred CCcEEEEecc--cceEEEEEEEEcCCeEEE-----Cccc--ccccc---ccCCC---CCCCCCCCCCCCCCC-CCCHHHH
Confidence 1459999999 5888876655 776552 1210 01000 01000 011111111222210 0111
Q ss_pred ----hHHHHHHHHHHHHHhCCcEeEE---EEEEeCCCCCeEEEEeccCCCCCC----CcccchHHHHHHHHHHHHhh
Q 019600 267 ----RPLLERLAKELRRQLGLRLFNL---DIIREHGTRDQFYVIDINYFPGYG----KMPEYEHIFTDFLLSLTQSR 332 (338)
Q Consensus 267 ----~~~~~~lA~~l~~~LGl~l~Gv---Dvi~~~~~g~~~~ViDVN~fPg~~----gv~~~~~~l~~~l~~~i~~~ 332 (338)
++.++..+..+++. |..+-|| =++.+. +| ++|||.|.-.|== =++-..+.|.+.+...+.++
T Consensus 244 ~~~~~~Iv~ptv~gm~~E-G~~f~GvLy~glMlt~-~G--PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~ 316 (428)
T COG0151 244 ERAVEEIVEPTVEGMAKE-GYPFRGVLYAGLMLTA-DG--PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGK 316 (428)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCceEEEEeEEEEcC-CC--cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCC
Confidence 12234455666666 7777774 344443 34 8999999987721 22333455677777776663
No 85
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.54 E-value=2.5e-06 Score=86.51 Aligned_cols=175 Identities=13% Similarity=0.201 Sum_probs=113.8
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCcc-CCcEEEEecCCCChhHHH-HhcCCCCcEEEeeCCCCCCCc
Q 019600 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVD-VPRQLVIERDASSIPDVV-LKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~-~P~~~~~~~~~~~~~~~l-~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
-|++.|-| +.+|+.+.||...-.++.+. ++| +|-+.=.. .+..... ....++||+.+|...|+ +
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~A-------gVp~VPG~~g~~---qd~~~~~~~A~eiGyPVlIKAsaGG---G 164 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAEA-------GVPTVPGYHGPI---QDAAELVAIAEEIGYPVLIKASAGG---G 164 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCCcc---cCHHHHHHHHHhcCCcEEEEeccCC---C
Confidence 48888876 57899999999877777754 555 45443221 1222211 23579999999976643 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE----EEEEEEe-cCCCCCcccccCCC
Q 019600 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSA 237 (338)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~----v~~~~R~-Slp~~~~~~~~~~~ 237 (338)
+.+|-++.+.+++.+. +.-++++.|+.. .|-+-+-|+||+ |+.-.|- |+- ..
T Consensus 165 GKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSlQ--------RR- 234 (645)
T COG4770 165 GKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSLQ--------RR- 234 (645)
T ss_pred CCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccchh--------hh-
Confidence 8899999999887652 567999999985 566788888875 3333443 320 00
Q ss_pred ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCC
Q 019600 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg 310 (338)
|++- -..+...-+++.. .+.+-+-|++++++.|-.-+| |-+|++.+ + .+|++|+|.-=.
T Consensus 235 -----hQKV--IEEAPaP~l~~~~-----R~amg~aAv~~a~avgY~gAGTVEFivd~~-~-~f~FlEMNTRLQ 294 (645)
T COG4770 235 -----HQKV--IEEAPAPFLTEET-----REAMGEAAVAAAKAVGYVGAGTVEFIVDAD-G-NFYFLEMNTRLQ 294 (645)
T ss_pred -----cchh--hhcCCCCCCCHHH-----HHHHHHHHHHHHHhcCCCcCceEEEEEcCC-C-cEEEEEeeccee
Confidence 0000 0000000111111 346778999999999999999 99999974 4 499999996433
No 86
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.52 E-value=2.8e-06 Score=83.11 Aligned_cols=162 Identities=13% Similarity=0.165 Sum_probs=94.2
Q ss_pred ccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc--
Q 019600 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (338)
Q Consensus 114 ~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-- 191 (338)
+||..+++.|.++ ||++|++..- . ..+.||+||||..|.|. -|.+..++.+.++|...
T Consensus 125 ~dKk~~yk~L~~a-------GI~~Pk~~~~---p---------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~ 184 (366)
T PRK13277 125 TGEKNYYWLLEKA-------GIPYPKLFKD---P---------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSE 184 (366)
T ss_pred cCHHHHHHHHHHc-------CCCCceeecC---c---------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHH
Confidence 5666778888854 8999998741 1 24789999999886553 38899999999988753
Q ss_pred ---C---------CCeEEEecccCCCcEE--EEEEE--CCE--EEEEEEecCCCCCcccccCCCceeeecCcccccccCC
Q 019600 192 ---E---------PPLVLQEFVNHGGVLF--KVYIV--GEA--IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASAD 253 (338)
Q Consensus 192 ---~---------~p~vvQeFI~h~g~~~--KV~VI--Gd~--v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~ 253 (338)
+ ..+++||||. |..| -+|+- -++ .....||---|+ +|+...+-..+......
T Consensus 185 ~l~~~g~I~~~~~~~~iIQEyI~--G~ey~~d~F~s~l~g~ve~l~id~R~esn~--------dg~~r~pa~~ql~~~~~ 254 (366)
T PRK13277 185 ELIKAGVIDREDLKNARIEEYVI--GAHFNFNYFYSPIRDRLELLGIDRRIQSNL--------DGFVRLPAPQQLKLNEE 254 (366)
T ss_pred hhhhcCcccccccccceeEeccC--CCEEEEEEEEeccCCcEEEEEEeecccccc--------ccccccChhhhhhcccC
Confidence 1 2347999996 6655 45654 442 223333211121 12211110000000000
Q ss_pred C----CCCCccc-cCCCChHHHHHHHHHHHHHhC-------CcEeEEEEEEeCCCCCeEEEEeccCC
Q 019600 254 D----ADLDPCV-AELPPRPLLERLAKELRRQLG-------LRLFNLDIIREHGTRDQFYVIDINYF 308 (338)
Q Consensus 254 ~----~~~~~~~-~~~p~~~~~~~lA~~l~~~LG-------l~l~GvDvi~~~~~g~~~~ViDVN~f 308 (338)
+ ..-.|.. .+. ..+.+.+++.++.++++ ..-|.+|.++++ ++ .++|+|||.=
T Consensus 255 p~~vv~G~~p~t~rEs-lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~-d~-~~~V~EInpR 318 (366)
T PRK13277 255 PRYIEVGHEPATIRES-LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP-DL-DFVVYDVAPR 318 (366)
T ss_pred CceEEEcCccccchHH-HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC-CC-cEEEEEEcCC
Confidence 0 0000111 111 23567788888888877 566779999875 34 6899999953
No 87
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.4e-06 Score=83.63 Aligned_cols=218 Identities=13% Similarity=0.227 Sum_probs=128.0
Q ss_pred ccEEEEccCc------hhHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC
Q 019600 75 FDIVLHKLTG------KEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS 148 (338)
Q Consensus 75 ~DvilhK~~~------~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~ 148 (338)
.|.||.|-.. +..+..+.-+... |++.||++.++....||--...-|.++....+...+|.=.++..-..
T Consensus 156 PdfVlirqhA~~mA~~~d~rslvig~qya--giP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnH-- 231 (488)
T KOG3895|consen 156 PDFVLIRQHAFSMALNEDYRSLVIGLQYA--GIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH-- 231 (488)
T ss_pred CCEEEEcccchhhccccchHHHHHHHHhc--CCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCc--
Confidence 4677766543 1233344444444 89999999999999999544433444333333344554333333111
Q ss_pred ChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEE
Q 019600 149 SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVR 221 (338)
Q Consensus 149 ~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~ 221 (338)
+... ..-+||+||| .++|- -+-|-..|.|.++|.++ +.-.-+|-||+ .-.|+||--||..+.+++
T Consensus 232 ---K~m~-s~~tyPvVVk--vghah-sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-aKYDiriQKIG~nYKaym 303 (488)
T KOG3895|consen 232 ---KEML-SQPTYPVVVK--VGHAH-SGMGKIKVENHEDFQDIASVVALTKTYATAEPFID-AKYDIRIQKIGHNYKAYM 303 (488)
T ss_pred ---hhhc-cCCCCcEEEE--ecccc-cccceeeecchhhhHhHHHHHHHHhhhhhcccccc-ccceeehhhhhhhHHHHh
Confidence 1111 2346999999 54433 23344677888888764 45567888997 456899999999999999
Q ss_pred EecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeE
Q 019600 222 RFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQF 300 (338)
Q Consensus 222 R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L-Gl~l~GvDvi~~~~~g~~~ 300 (338)
|.|+- +.|++|.|.--..+++ + .+.-+.....+.+.+ ||++..||.+... +| +=
T Consensus 304 RtsIs----gnWKtNtGSamLEQIa-----------------m--seRyklwvdtcse~fGgldICav~alhsK-dG-rd 358 (488)
T KOG3895|consen 304 RTSIS----GNWKTNTGSAMLEQIA-----------------M--SERYKLWVDTCSEMFGGLDICAVKALHSK-DG-RD 358 (488)
T ss_pred hhhhc----cCcccCchHHHHHHHH-----------------H--HHHHHHHHHHHHHhcCCcceEEeeeeecc-cc-hh
Confidence 99972 2344443311111110 0 122234445555555 5899999999875 56 55
Q ss_pred EEEeccC--CCCCCC-cccchHHHHHHHHHHH
Q 019600 301 YVIDINY--FPGYGK-MPEYEHIFTDFLLSLT 329 (338)
Q Consensus 301 ~ViDVN~--fPg~~g-v~~~~~~l~~~l~~~i 329 (338)
||+|||. .|=+.. .++-...+.+++..++
T Consensus 359 ~i~eV~d~smpliGeh~eeDrql~~~Lvvskm 390 (488)
T KOG3895|consen 359 YIIEVMDSSMPLIGEHQEEDRQLISELVVSKM 390 (488)
T ss_pred heeeeccccccccccchhHHHHHHHHHHHHHh
Confidence 8999997 454542 2232344444444433
No 88
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.44 E-value=6.3e-06 Score=86.30 Aligned_cols=171 Identities=17% Similarity=0.293 Sum_probs=112.2
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccC-CcEEEEecCC-CChhHHHH-hcCCCCcEEEeeCCCCCCC
Q 019600 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQLVIERDA-SSIPDVVL-KAGLTLPLVAKPLVADGSA 174 (338)
Q Consensus 99 p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~-P~~~~~~~~~-~~~~~~l~-~~~l~fP~VvKp~~a~Gs~ 174 (338)
.|+..|-| ++.++.+.||...-..-.+. ++|+ |-+ ... +.+.+.+. ..+.+||+++|-.+|+
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~a-------gvPvipgt----~~~~~~~ee~~~fa~~~gyPvmiKA~~GG--- 169 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIKA-------GVPVIPGT----DGPIETIEEALEFAEEYGYPVMIKAAAGG--- 169 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHHc-------CCCccCCC----CCCcccHHHHHHHHHhcCCcEEEEEccCC---
Confidence 48888877 67889999999755544433 4543 211 111 12222221 3568999999977754
Q ss_pred cceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE----EEEEEEe-cCCCCCcccccCC
Q 019600 175 KSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTS 236 (338)
Q Consensus 175 ~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~----v~~~~R~-Slp~~~~~~~~~~ 236 (338)
+++||-+|.++++|.+. +..++++.||. +.+-+-|-++||+ |+..+|- |.- ..
T Consensus 170 GGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSvQ--------RR 240 (1149)
T COG1038 170 GGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSVQ--------RR 240 (1149)
T ss_pred CccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEEeecccchh--------hc
Confidence 58999999999888752 66799999998 5667899999886 4444554 220 00
Q ss_pred CceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccC
Q 019600 237 AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINY 307 (338)
Q Consensus 237 ~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~ 307 (338)
|+.- -..+.-..++++. ..++-+-|.++++..|-.-+| +.++++++ | ++|+||||-
T Consensus 241 ------hQKV--VE~APa~~L~~~~-----R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~-~fyFIEvNP 297 (1149)
T COG1038 241 ------HQKV--VEVAPAPYLSPEL-----RDEICDDAVKLARNIGYINAGTVEFLVDED-G-KFYFIEVNP 297 (1149)
T ss_pred ------ccee--EEecCCCCCCHHH-----HHHHHHHHHHHHHHcCCcccceEEEEEcCC-C-cEEEEEecC
Confidence 1100 0001111222222 346778999999999999999 99999974 4 589999994
No 89
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.41 E-value=2e-06 Score=77.43 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=59.4
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcE-EEeeCCCCCCCcceeeEEEeChhhHhc---
Q 019600 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPL-VAKPLVADGSAKSHELSLAYDQYSLKK--- 190 (338)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~-VvKp~~a~Gs~~sh~m~iv~~~~~L~~--- 190 (338)
+|..+-+.+.++ +|||+++.++. +.+++.+.+.. ..+|+ |+| ++|.+.+.++.|+.+.++..+
T Consensus 2 SK~faK~fm~~~-------~IPTa~~~~f~-~~~~A~~~l~~--~~~p~~ViK---adGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRY-------GIPTAKYKVFT-DYEEALEYLEE--QGYPYVVIK---ADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHT-------T-SB--EEEES-SHHHHHHHHHH--HSSSEEEEE---ESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-------CCCCCCeeEEC-CHHHHHHHHHh--cCCCceEEc---cCCCCCCCEEEEeCCHHHHHHHHH
Confidence 466666777764 89999999885 44445555544 56788 999 456777899999999865332
Q ss_pred -c---------CCCeEEEecccCCCcEEEEEEE--CCEEE
Q 019600 191 -L---------EPPLVLQEFVNHGGVLFKVYIV--GEAIK 218 (338)
Q Consensus 191 -l---------~~p~vvQeFI~h~g~~~KV~VI--Gd~v~ 218 (338)
+ ..++|+|||+ .|..+.++++ |+++.
T Consensus 69 ~~~~~~~fg~~~~~vvIEE~l--~G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 69 EIFVDRKFGDAGSKVVIEEFL--EGEEVSLFALTDGKNFV 106 (194)
T ss_dssp HHHTSSTTCCCGSSEEEEE-----SEEEEEEEEEESSEEE
T ss_pred HhccccccCCCCCcEEEEecc--CCeEEEEEEEEcCCeEE
Confidence 1 3579999999 5999988776 66654
No 90
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.32 E-value=1.5e-05 Score=75.84 Aligned_cols=97 Identities=14% Similarity=0.246 Sum_probs=35.7
Q ss_pred hccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc--
Q 019600 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-- 190 (338)
Q Consensus 113 l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-- 190 (338)
+..|..+.+.+.+.........-..|.+..+..+........ ...-.--+|+||.. |+ .+.|+.++.+.+.+.+
T Consensus 19 l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~-~~~~~~~wI~KP~~--~~-rG~GI~l~~~~~~i~~~~ 94 (292)
T PF03133_consen 19 LTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYF-EKNPKNLWIVKPSN--GS-RGRGIKLFNNLEQILRFS 94 (292)
T ss_dssp E-----------------------------HHHHHHHHHHHH-HTTS---EEEEES----------EEEES-HHHHHCCH
T ss_pred hhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHH-hcCCCCEEEEeccc--cC-CCCCceecCCHHHHHHHh
Confidence 345555555554431110101124677777642221222211 11112369999977 44 6889999999999885
Q ss_pred --cCCCeEEEecccCC----Cc--EEEEEEE
Q 019600 191 --LEPPLVLQEFVNHG----GV--LFKVYIV 213 (338)
Q Consensus 191 --l~~p~vvQeFI~h~----g~--~~KV~VI 213 (338)
...++|||+||..+ |+ |+|+||+
T Consensus 95 ~~~~~~~vvQkYI~~PlLi~grKFDlR~yvl 125 (292)
T PF03133_consen 95 KNKNQPYVVQKYIENPLLIDGRKFDLRVYVL 125 (292)
T ss_dssp CCTTS-EEEEE--SSB--BTTB-EEEEEEEE
T ss_pred hhhhhhhhhhhccCCCeEEeeeeEEEEEEEE
Confidence 57899999999863 54 7799887
No 91
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.18 E-value=4.3e-05 Score=78.82 Aligned_cols=226 Identities=15% Similarity=0.264 Sum_probs=137.9
Q ss_pred CCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeC
Q 019600 26 QSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (338)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViD 105 (338)
..+.|.||=-++|-- .-+..+++++.|++++++++.=--.. |++ .. +..+.. ...|+..|-
T Consensus 76 ADEaY~iGk~l~PV~-AYL~ideii~iak~~~vdavHPGYGF-LSE-----------rs-dFA~av-----~~AGi~fiG 136 (1176)
T KOG0369|consen 76 ADEAYLIGKGLPPVG-AYLAIDEIISIAKKHNVDAVHPGYGF-LSE-----------RS-DFAQAV-----QDAGIRFIG 136 (1176)
T ss_pred cccceecccCCCchh-hhhhHHHHHHHHHHcCCCeecCCccc-ccc-----------ch-HHHHHH-----HhcCceEeC
Confidence 356778877766633 23566789999999998875422211 111 01 121111 124888887
Q ss_pred h-HHHHHHhccHHHHHHHHHhccccCCCCCccC-Cc---EEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeE
Q 019600 106 P-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PR---QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (338)
Q Consensus 106 p-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~-P~---~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (338)
| |+-|..+.||...-++-.+. ++|+ |- -+.. .+++.+.. ...+||+|.|-.. |. ++++|.
T Consensus 137 PspeVi~~mGDKv~AR~~Ai~a-------gVpvVPGTpgPitt---~~EA~eF~--k~yG~PvI~KAAy--GG-GGRGmR 201 (1176)
T KOG0369|consen 137 PSPEVIDSMGDKVAARAIAIEA-------GVPVVPGTPGPITT---VEEALEFV--KEYGLPVIIKAAY--GG-GGRGMR 201 (1176)
T ss_pred CCHHHHHHhhhHHHHHHHHHHc-------CCCccCCCCCCccc---HHHHHHHH--HhcCCcEEEeecc--cC-CCcceE
Confidence 6 67788899998755554443 4442 21 1111 11222322 3578999999544 44 689999
Q ss_pred EEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE----EEEEEEe-cCCCCCcccccCCCceeee
Q 019600 181 LAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAGVFRF 242 (338)
Q Consensus 181 iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~----v~~~~R~-Slp~~~~~~~~~~~g~~~~ 242 (338)
+|..-+++++. +..+.++.|++. .+-+-|-.+||+ |+.++|- |. ...
T Consensus 202 vVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSv--------QRR------ 266 (1176)
T KOG0369|consen 202 VVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSV--------QRR------ 266 (1176)
T ss_pred EeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccch--------hhh------
Confidence 99998777642 567999999985 456788888886 3444543 21 000
Q ss_pred cCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCC
Q 019600 243 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 309 (338)
Q Consensus 243 ~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fP 309 (338)
|+.- -..+.-..++|.+ .+.+-.-|.++++..|-.-+| +.+++|.. | ++|+||||.-=
T Consensus 267 HQKV--VEiAPA~~Lp~~v-----R~~~~~davklAk~vgY~NAGTvEFLvD~~-g-~hYFIEvN~Rl 325 (1176)
T KOG0369|consen 267 HQKV--VEIAPAKTLPPEV-----RDAILTDAVKLAKHVGYENAGTVEFLVDQK-G-RHYFIEVNPRL 325 (1176)
T ss_pred hcce--eEecccccCCHHH-----HHHHHHHHHHHHHHhCcccCCceEEEEccC-C-CEEEEEecCce
Confidence 1100 0001112222222 345667889999999999999 99999964 6 67999999643
No 92
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.44 E-value=0.018 Score=53.58 Aligned_cols=185 Identities=17% Similarity=0.263 Sum_probs=104.1
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeC
Q 019600 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (338)
Q Consensus 105 Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (338)
|.-.-...|.||+..-+-+++.. .....|+..-+.++.+++ ....|.-++|+||..++|+ ..++.+
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~-----g~~~l~pll~v~~~~~~i----~~~~Lp~~fViK~nhgsg~-----~~i~~d 75 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKI-----GEEYLPPLLGVYDNPDDI----DFDSLPDKFVIKPNHGSGS-----NIIVRD 75 (239)
T ss_pred CCCccceecchHHHHHHHHHHhC-----CCceECceeecCCChhhh----hhhcCCCCEEEEEecCCCc-----EEEEeC
Confidence 33345567889998888887642 133455555443232222 2345778999999886553 344443
Q ss_pred h-----hh----Hhc-----------------cCCCeEEEecccCC-C---cEEEEEEECCEEEEEEEecCCCCCccccc
Q 019600 185 Q-----YS----LKK-----------------LEPPLVLQEFVNHG-G---VLFKVYIVGEAIKVVRRFSLPDVTKQDLS 234 (338)
Q Consensus 185 ~-----~~----L~~-----------------l~~p~vvQeFI~h~-g---~~~KV~VIGd~v~~~~R~Slp~~~~~~~~ 234 (338)
. +. +.. +.+-+++++|+... | .|||+||.++++....--+-.. .+.
T Consensus 76 k~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~--~~~-- 151 (239)
T PF14305_consen 76 KSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRF--GNH-- 151 (239)
T ss_pred CcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCC--CCe--
Confidence 3 11 111 14458999999974 4 6999999999755443222110 000
Q ss_pred CCCceee--ecCcccccccCCCCCCCccccCCC-ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCC
Q 019600 235 TSAGVFR--FPRVSCAAASADDADLDPCVAELP-PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGY 311 (338)
Q Consensus 235 ~~~g~~~--~~~~s~~~~~~~~~~~~~~~~~~p-~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (338)
....|+ +....-.. ..+ .. ...+.| .-+++.++|.+|++- ..+.-||+-..+ | ++|+=|+=.+||-
T Consensus 152 -~~~~yd~dw~~l~~~~--~~~--~~-~~~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~--~-~iyFGElTf~p~~ 220 (239)
T PF14305_consen 152 -KRNFYDRDWNRLPFRS--DYP--PD-EDIPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD--G-KIYFGELTFTPGA 220 (239)
T ss_pred -EEEEECcccCCCcccc--CCC--CC-CCCCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC--C-cEEEEeeecCCCC
Confidence 011221 11111000 000 00 111222 235678899888886 567889999764 3 6999999999996
Q ss_pred CCcccch
Q 019600 312 GKMPEYE 318 (338)
Q Consensus 312 ~gv~~~~ 318 (338)
.-.+-++
T Consensus 221 G~~~~~p 227 (239)
T PF14305_consen 221 GFEPFFP 227 (239)
T ss_pred cCCCCCC
Confidence 6444333
No 93
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.43 E-value=0.00064 Score=72.70 Aligned_cols=196 Identities=21% Similarity=0.322 Sum_probs=121.9
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCC-CCCCcce
Q 019600 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSH 177 (338)
Q Consensus 100 ~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a-~Gs~~sh 177 (338)
++-|+ -+|+.|...-||++..+.|.++ +|..|.+-.+++ -+++.+ -...++||+++.|.-- .|.
T Consensus 1017 ~~kilGTsP~~ID~AEnR~kFS~~Ld~i-------~v~Qp~Wkelt~-~~eA~~--F~~~VgYP~lvRPSYVLSGa---- 1082 (1435)
T KOG0370|consen 1017 GVKILGTSPEMIDSAENRFKFSRMLDSI-------GVDQPAWKELTS-LEEAKK--FAEKVGYPVLVRPSYVLSGA---- 1082 (1435)
T ss_pred CCeEecCChHhhhhhhhHHHHHHHHHHc-------CCCchhhhhhcc-HHHHHH--HHHhcCCceEecccceecch----
Confidence 34443 4688999999999999999976 788888876642 222222 1356999999999542 244
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEEC--CEEEEEEEecCCCCCcccccCCCceeeecCcc
Q 019600 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVG--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVS 246 (338)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV~VIG--d~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s 246 (338)
.|.+++++++|+.. +.|+|+-.||+ +++.+-|=.|+ +++.+ .-.|-.- . +.|. |+.-
T Consensus 1083 AMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie-~AkEidvDAVa~~G~~~~-haiSEHv--E-----nAGV---HSGD 1150 (1435)
T KOG0370|consen 1083 AMNVVYSESDLKSYLEQASAVSPDHPVVISKFIE-GAKEIDVDAVASDGKVLV-HAISEHV--E-----NAGV---HSGD 1150 (1435)
T ss_pred hhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhc-ccceechhhhccCCeEEE-Eehhhhh--h-----cccc---cCCc
Confidence 69999999998863 67999999998 56776654442 22221 1122110 0 0010 1000
Q ss_pred cccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEecc-----CCCCCCCcccchHH
Q 019600 247 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDIN-----YFPGYGKMPEYEHI 320 (338)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l-~GvDvi~~~~~g~~~~ViDVN-----~fPg~~gv~~~~~~ 320 (338)
+.-...+.++.+.. -+.+++++.+++++|.++- |++-+|..+ |.+.|||-| .||-..+.-++ .
T Consensus 1151 -Atlv~Ppq~l~~~t-----~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~RaSRSFPFvSKtlgv--d 1219 (1435)
T KOG0370|consen 1151 -ATLVLPPQDLSADT-----LERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNVRASRSFPFVSKTLGV--D 1219 (1435)
T ss_pred -eeEeCCchhcCHHH-----HHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeeeeeeccccceehhcCc--h
Confidence 00000111121111 3468999999999999873 678888753 579999999 47776666555 4
Q ss_pred HHHHHHHHHHhh
Q 019600 321 FTDFLLSLTQSR 332 (338)
Q Consensus 321 l~~~l~~~i~~~ 332 (338)
|++.-.+.+...
T Consensus 1220 fi~~At~~i~g~ 1231 (1435)
T KOG0370|consen 1220 FIALATRAIMGV 1231 (1435)
T ss_pred HHHHHHHHHhCC
Confidence 555555555543
No 94
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.03 E-value=0.0017 Score=64.45 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=61.2
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCC-CcEEEeeCCC-CCCCcceeeEEEeChhhHhcc---
Q 019600 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL--- 191 (338)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l--- 191 (338)
+...++|++. +||+|++.++. +.+++.+. ...++ ||+|+||..- .|...+.++.++.+.+++.+.
T Consensus 6 ~~aK~ll~~~-------GIpvp~~~~~~-~~~ea~~~--~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~ 75 (386)
T TIGR01016 6 YQAKQIFAKY-------GIPVPRGYVAT-SVEEAEEI--AAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEK 75 (386)
T ss_pred HHHHHHHHHc-------CCCCCCceeeC-CHHHHHHH--HHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHH
Confidence 4455667754 89999999885 33333332 23478 9999999732 133345689999998776541
Q ss_pred --C---------------CCeEEEecccCCCcEEEEEEECCE
Q 019600 192 --E---------------PPLVLQEFVNHGGVLFKVYIVGEA 216 (338)
Q Consensus 192 --~---------------~p~vvQeFI~h~g~~~KV~VIGd~ 216 (338)
. ..+++|+|+++ |+.+-|.+++|.
T Consensus 76 l~~~~~~~~~~~~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~ 116 (386)
T TIGR01016 76 LLGKELVTNQTDPLGQPVNKILIEEATDI-DKEYYLSIVIDR 116 (386)
T ss_pred HhccceeecccCCCCCEeeEEEEEECccC-CceEEEEEEEcC
Confidence 1 14899999964 889988888884
No 95
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.84 E-value=0.0028 Score=63.93 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=94.6
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCc-C-------CCccEEEEccCchhH-------HHHHHHHHHhCCCceeeChHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLSD-Q-------GPFDIVLHKLTGKEW-------RQILEEYRQTHPEVTVLDPPY 108 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~~-q-------g~~DvilhK~~~~~~-------~~~l~~~~~~~p~v~ViDp~~ 108 (338)
-....|.+..+++|++.+..|++. |.- . .+.|+|.=|+.+.+. ...++.|.+. .+++++|+.
T Consensus 200 ~Ef~~f~~~f~~~G~~~vI~d~~~-L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~--av~~vgsfr 276 (445)
T PF14403_consen 200 SEFEVFQRLFEEHGYDCVICDPRD-LEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDG--AVCMVGSFR 276 (445)
T ss_pred chHHHHHHHHHHcCCceEecChHH-ceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcC--CeEEecchh
Confidence 344468999999999999999987 442 2 288999988876422 2355666654 789999995
Q ss_pred HHHHhccHHHHHHHHHh-cc---ccCC-CC--CccCCcEEEEec-------CCCChh-HHHHhcCCCCcEEEeeCCCCCC
Q 019600 109 AIQHLHNRQSMLQCVAD-MN---LSNS-YG--KVDVPRQLVIER-------DASSIP-DVVLKAGLTLPLVAKPLVADGS 173 (338)
Q Consensus 109 ai~~l~dR~~~~~~L~~-~~---l~~~-~~--~i~~P~~~~~~~-------~~~~~~-~~l~~~~l~fP~VvKp~~a~Gs 173 (338)
+ ..++||.... +|.+ .. |+.. .. .=-+|-|..++. ...++. ..+.... -+|+||..+.
T Consensus 277 s-~l~hnK~iFa-iL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r~---~lVLKP~D~Y-- 349 (445)
T PF14403_consen 277 S-QLLHNKIIFA-ILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANRD---RLVLKPNDEY-- 349 (445)
T ss_pred h-hhhhhhHHHH-HhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhchh---cEEecccccc--
Confidence 4 6788887532 3321 10 1100 00 114788888854 112222 2233333 7999998865
Q ss_pred CcceeeEE--EeChhhHhc-----cCCCeEEEecccCC
Q 019600 174 AKSHELSL--AYDQYSLKK-----LEPPLVLQEFVNHG 204 (338)
Q Consensus 174 ~~sh~m~i--v~~~~~L~~-----l~~p~vvQeFI~h~ 204 (338)
+|||+++ =++.+++++ ++.|+|+|||+.-.
T Consensus 350 -gg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~~ 386 (445)
T PF14403_consen 350 -GGKGVYIGWETSPEEWEAALEEAAREPYILQEYVRPP 386 (445)
T ss_pred -CCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 4667665 344455554 37799999999753
No 96
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=96.82 E-value=0.0029 Score=62.87 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=62.9
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCC-CCcEEEeeCCC-CCCCcceeeEEEeChhhHhcc-
Q 019600 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL- 191 (338)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l-~fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l- 191 (338)
+.+.+.++|++. +||+|++.++. +.+++.+. ...+ +||+|+||..- .|.+.+.++.+..+++++.+.
T Consensus 4 ~e~~ak~lL~~~-------gIpvp~~~~~~-~~~ea~~~--a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~ 73 (388)
T PRK00696 4 HEYQAKELFAKY-------GVPVPRGIVAT-TPEEAVEA--AEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFA 73 (388)
T ss_pred CHHHHHHHHHHc-------CCCCCCCeeeC-CHHHHHHH--HHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHH
Confidence 345566777754 89999999885 33333332 2347 89999999752 234467799999888776541
Q ss_pred -----C-----------C---CeEEEecccCCCcEEEEEEECCE
Q 019600 192 -----E-----------P---PLVLQEFVNHGGVLFKVYIVGEA 216 (338)
Q Consensus 192 -----~-----------~---p~vvQeFI~h~g~~~KV~VIGd~ 216 (338)
. . .+++|+|+++ |..+-+.+..|.
T Consensus 74 ~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~ 116 (388)
T PRK00696 74 KQILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDR 116 (388)
T ss_pred HHhhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcC
Confidence 1 1 2899999964 788888888774
No 97
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0065 Score=61.59 Aligned_cols=73 Identities=21% Similarity=0.364 Sum_probs=48.1
Q ss_pred cCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhccCCCeEEEecccCC------CcEEE
Q 019600 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG------GVLFK 209 (338)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~~p~vvQeFI~h~------g~~~K 209 (338)
..|++.++-.|.+++.+......-.. +||||-. |+.+-|+.++.....+. -+.|+++|+||... -.|.+
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppa---saRg~gIrv~~kw~q~p-k~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRL-WIVKPPA---SARGIGIRVINKWSQFP-KDRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCcccc-EEecCcc---cccCcceEeccchhhCC-CcccHHHHHHhhcceeecCcceeEE
Confidence 58999888544444444443322222 8899866 44666888888777665 36799999999753 45667
Q ss_pred EEEE
Q 019600 210 VYIV 213 (338)
Q Consensus 210 V~VI 213 (338)
+||+
T Consensus 357 lYv~ 360 (662)
T KOG2156|consen 357 LYVV 360 (662)
T ss_pred EEEE
Confidence 7765
No 98
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=95.70 E-value=0.4 Score=40.45 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=65.8
Q ss_pred cEEEeeCCCCCCCcceeeEEEeChhhHhc---c--CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCC
Q 019600 162 PLVAKPLVADGSAKSHELSLAYDQYSLKK---L--EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS 236 (338)
Q Consensus 162 P~VvKp~~a~Gs~~sh~m~iv~~~~~L~~---l--~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~ 236 (338)
|+-+||..-. +.-.=.++...+.|.. + +.++++.|.++ =...||+||+.++++...+-.- +
T Consensus 3 ~~FiKP~~~~---K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~~-~--------- 68 (130)
T PF14243_consen 3 PVFIKPPDDD---KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYRG-D--------- 68 (130)
T ss_pred CeEeCCCCCC---CcceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecCC-C---------
Confidence 7888987722 2221223333455543 2 67899999997 4779999999999987644311 0
Q ss_pred CceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH-HHhCCcEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 237 AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR-RQLGLRLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 237 ~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~-~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.... ++.+.+......+. ....-.-|.+|+=+.. +| ..+|||+|.+=+
T Consensus 69 ------------------~~~~------~~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 69 ------------------WDLE------PDPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDGWS 117 (130)
T ss_pred ------------------cccC------CCHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCccc
Confidence 0000 01122233333222 1556778889999875 45 589999997654
No 99
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=95.49 E-value=0.19 Score=56.81 Aligned_cols=187 Identities=13% Similarity=0.212 Sum_probs=110.4
Q ss_pred CceeeChHH-HHHHhccHHHHHHHHHhccccCC---CCCccCCcEE------EEecC------CCChhHHH-HhcCCCCc
Q 019600 100 EVTVLDPPY-AIQHLHNRQSMLQCVADMNLSNS---YGKVDVPRQL------VIERD------ASSIPDVV-LKAGLTLP 162 (338)
Q Consensus 100 ~v~ViDp~~-ai~~l~dR~~~~~~L~~~~l~~~---~~~i~~P~~~------~~~~~------~~~~~~~l-~~~~l~fP 162 (338)
+++.|-||. |+.-+.||..+.-+-+.++++.- ..+|.++... .+..+ ..+..+.+ +...+|||
T Consensus 162 ~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfP 241 (2196)
T KOG0368|consen 162 GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFP 241 (2196)
T ss_pred CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCc
Confidence 588898875 56778899987666555543211 1234444322 11101 01111112 23459999
Q ss_pred EEEeeCCCCCCCcceeeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccc
Q 019600 163 LVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDL 233 (338)
Q Consensus 163 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~ 233 (338)
+.+|-..|+ ++.|+-.+.|.++++.+ ..|+.+=.-.. ++|-+-|-.++|++--+.--...|- .+
T Consensus 242 vMIKASEGG---GGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~-~ARHlEVQlLaDqYGn~IsLfgRDC---Si 314 (2196)
T KOG0368|consen 242 VMIKASEGG---GGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD-QARHLEVQLLADQYGNVISLFGRDC---SI 314 (2196)
T ss_pred eEEEeccCC---CCcceeeccchHHHHHHHHHHHhhCCCCceeeeeccc-CcceeeeehhhhhcCCEeEeecccc---hH
Confidence 999977754 47789999999998875 56777777665 4677777777775432210000110 00
Q ss_pred cCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccC
Q 019600 234 STSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINY 307 (338)
Q Consensus 234 ~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~ 307 (338)
... |+.- -. .-++.+-|. ..-+.+++.|.++++..|--=+| |..+-...+| +||++|.|-
T Consensus 315 QRR------hQKI--IE-EAPatIap~----etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~-~fyFLELNP 375 (2196)
T KOG0368|consen 315 QRR------HQKI--IE-EAPATIAPP----ETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG-EYYFLELNP 375 (2196)
T ss_pred HHH------HHHH--Hh-hCCcccCCH----HHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-cEEEEecCc
Confidence 000 0000 00 001111110 01346899999999999999999 9999987666 899999994
No 100
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=94.42 E-value=0.025 Score=52.21 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCC---CCCcceeeEE-EeChhhHh
Q 019600 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD---GSAKSHELSL-AYDQYSLK 189 (338)
Q Consensus 114 ~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~---Gs~~sh~m~i-v~~~~~L~ 189 (338)
++-....++|+. .||++|++.++. +.++..+ ....++||+++|-..++ =| ...++.+ +.++++++
T Consensus 10 L~e~e~~~lL~~-------yGI~~~~~~~~~-~~~ea~~--~a~~ig~PvvlKi~sp~i~HKs-d~GgV~L~l~~~~~v~ 78 (222)
T PF13549_consen 10 LTEAEAKELLAA-------YGIPVPPTRLVT-SAEEAVA--AAEEIGFPVVLKIVSPDIAHKS-DVGGVRLNLNSPEEVR 78 (222)
T ss_dssp E-HHHHHHHHHT-------TT------EEES-SHHHHHH--HHHHH-SSEEEEEE-TT---HH-HHT-EEEEE-SHHHHH
T ss_pred cCHHHHHHHHHH-------cCcCCCCeeEeC-CHHHHHH--HHHHhCCCEEEEEecCCCCcCC-CCCcEEECCCCHHHHH
Confidence 445567788885 499999999985 3222332 22458999999987643 22 3345666 66776655
Q ss_pred cc----------------CCCeEEEecccCCCcEEEEEEECC
Q 019600 190 KL----------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (338)
Q Consensus 190 ~l----------------~~p~vvQeFI~h~g~~~KV~VIGd 215 (338)
+. -..+++|+.++++|..+-|.+.-|
T Consensus 79 ~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~D 120 (222)
T PF13549_consen 79 EAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRD 120 (222)
T ss_dssp HHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEEC
Confidence 31 124899999987788887776655
No 101
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=94.27 E-value=1.4 Score=45.87 Aligned_cols=135 Identities=16% Similarity=0.275 Sum_probs=92.7
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHh-ccHHHHHHHHHh
Q 019600 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHL-HNRQSMLQCVAD 125 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l-~dR~~~~~~L~~ 125 (338)
.++.+.|.+++|.+|.+-|+.||.. =+. ..++ . -|+++.-|..-..++ .+|..+-..+.+
T Consensus 58 ~ala~f~~e~~I~lVvvGPE~PL~~---------Gl~-----~~l~---~--~gi~~FGPs~~aAqlE~sK~fsK~fm~r 118 (788)
T KOG0237|consen 58 EALASFCKEHNINLVVVGPELPLVA---------GLA-----DVLR---S--AGIPCFGPSKQAAQLEASKNFSKDFMHR 118 (788)
T ss_pred HHHHHHHHHcceeEEEECCchhhhh---------hhh-----hhhh---c--cCcceeCchHHHHHhhhhHHHHHHHHHh
Confidence 4588999999999999999998863 011 1222 2 368888886544333 456555666664
Q ss_pred ccccCCCCCccCCcEEEEecCCCChhHHHHhcCCC-CcEEEeeCCCCCCCcceeeEEEeChhh-Hhcc------------
Q 019600 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGSAKSHELSLAYDQYS-LKKL------------ 191 (338)
Q Consensus 126 ~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~Gs~~sh~m~iv~~~~~-L~~l------------ 191 (338)
++|||-++..++ +++.+...+.. .+ +++|+| |+|-+-+.++.+..+.++ ++++
T Consensus 119 -------~~IPTA~y~~ft-~~e~a~sfi~~--~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~A 185 (788)
T KOG0237|consen 119 -------HNIPTAKYKTFT-DPEEAKSFIQS--ATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSA 185 (788)
T ss_pred -------cCCCcceeeeeC-CHHHHHHHHHh--CCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccc
Confidence 489999998885 44444443333 34 689999 889888999999988754 3321
Q ss_pred CCCeEEEecccCCCcEEEEEEECC
Q 019600 192 EPPLVLQEFVNHGGVLFKVYIVGE 215 (338)
Q Consensus 192 ~~p~vvQeFI~h~g~~~KV~VIGd 215 (338)
..-+|++||.+ |-...++..=|
T Consensus 186 G~tvViEE~LE--GeEvS~laftD 207 (788)
T KOG0237|consen 186 GKTVVIEELLE--GEEVSFLAFTD 207 (788)
T ss_pred cceEehhhhcC--cceEEEEEEec
Confidence 45689999995 77777766644
No 102
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=92.03 E-value=0.71 Score=44.50 Aligned_cols=92 Identities=18% Similarity=0.419 Sum_probs=62.2
Q ss_pred CCeEEEeccc-CCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 019600 193 PPLVLQEFVN-HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 271 (338)
Q Consensus 193 ~p~vvQeFI~-h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~ 271 (338)
.-+++.+|.+ +.+..|||||-+++++++-.+.. +. |.| .. ...... ...+.
T Consensus 150 ~~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~-----------~~~--L~---------~~~~~I-----~~~I~ 201 (299)
T PF07065_consen 150 YELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NY-----------YDF--LE---------ELKEEI-----RSKIQ 201 (299)
T ss_pred eEEEEeccccCCccceEEEEEECCEEEEEecccc-cc-----------cHH--HH---------HHHHHH-----HHHHH
Confidence 3478899998 46999999999999997744433 21 111 00 000000 12344
Q ss_pred HHH-HHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 272 RLA-KELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 272 ~lA-~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
+.. ..+...+.+.=|-|||.+.... ++.++||+|-|-+-.+
T Consensus 202 ~F~~~~I~~~~~~~~~v~DVyi~~~~-~~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 202 EFFEEHIKPKFPLDNYVFDVYITRDK-DKVWLIDFNPFGPRTD 243 (299)
T ss_pred HHHHHHHHhhCCCCCEEEEEEEcCCC-CeEEEEEecCCcccCc
Confidence 444 5678889999999999998743 4799999999988554
No 103
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=0.18 Score=51.68 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=42.5
Q ss_pred CCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc------------CCCeEEEecccCC----Cc--EEEEEEECCE
Q 019600 158 GLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------EPPLVLQEFVNHG----GV--LFKVYIVGEA 216 (338)
Q Consensus 158 ~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------~~p~vvQeFI~h~----g~--~~KV~VIGd~ 216 (338)
+=..++|+||.. .+.+.|+.++.+.+.+.+. +..+++|-||+++ |. |+|.||+=.+
T Consensus 197 ~~~~~wIvKP~~---~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~ 270 (497)
T KOG2157|consen 197 SERSWWIVKPAS---KSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTH 270 (497)
T ss_pred cccceEEecccc---ccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeec
Confidence 457799999754 5588999999988876653 4568999999985 44 5588887554
No 104
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=90.19 E-value=0.84 Score=41.50 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=44.2
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCC-cEEEeeCCC-CCCCcceeeEEEeChhhHhcc-----
Q 019600 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVA-DGSAKSHELSLAYDQYSLKKL----- 191 (338)
Q Consensus 119 ~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l----- 191 (338)
.-++|++ ++|++|++.++.+ .+++.+.... ++. ++|+|+.+- +|--.+-++-++.+.++....
T Consensus 7 aK~ll~~-------~gi~vp~g~~a~s-~eea~~~~~~--l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~ml 76 (202)
T PF08442_consen 7 AKELLRK-------YGIPVPRGVVATS-PEEAREAAKE--LGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEML 76 (202)
T ss_dssp HHHHHHC-------TT----SEEEESS-HHHHHHHHHH--HTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTT
T ss_pred HHHHHHH-------cCCCCCCeeecCC-HHHHHHHHHH--hCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHh
Confidence 3456664 4899999999953 3333333223 444 689999554 444456778899998776542
Q ss_pred C---------------CCeEEEecccCCCcEE
Q 019600 192 E---------------PPLVLQEFVNHGGVLF 208 (338)
Q Consensus 192 ~---------------~p~vvQeFI~h~g~~~ 208 (338)
+ .-++++|+++|..-.|
T Consensus 77 g~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Y 108 (202)
T PF08442_consen 77 GKTLKTKQTGPKGEKVNKVLVEEFVDIKREYY 108 (202)
T ss_dssp TSEEE-TTSTTTEEEE--EEEEE---CCEEEE
T ss_pred CCceEeeecCCCCCEeeEEEEEecCccCceEE
Confidence 1 1378999999865444
No 105
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=88.79 E-value=11 Score=37.80 Aligned_cols=166 Identities=22% Similarity=0.297 Sum_probs=91.2
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCC-CCcCC---------CccEEEEccCchhHHHHHHHHH--HhCCCceeeChHHHHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRP-LSDQG---------PFDIVLHKLTGKEWRQILEEYR--QTHPEVTVLDPPYAIQ 111 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~-l~~qg---------~~DvilhK~~~~~~~~~l~~~~--~~~p~v~ViDp~~ai~ 111 (338)
....=|.++|++.|++...+++..- +.+.| ++|++. |+..=+|... ++|. -.+.++.+|||+-++-
T Consensus 191 ~T~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~lf-KlyPwE~~~~-e~~~~~l~~~~~~~ieP~wk~l 268 (397)
T PHA02117 191 VTIAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMCF-KLYPWEWMME-DEFSAEILVSQTRFIEPAWKMM 268 (397)
T ss_pred HHHHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeeee-ecccHHHHhh-CcchhhhhhCCcEEechhHHhH
Confidence 3333367788989987776665541 11223 333433 6665333211 1121 1135799999997664
Q ss_pred HhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCC-CcEEEeeCCCCCCCcceeeEEEeChhhHhc
Q 019600 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGSAKSHELSLAYDQYSLKK 190 (338)
Q Consensus 112 ~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~ 190 (338)
+.||.. +.+|-++- + +++--.|.+..- +. ..... ..++ -..|.||+.+ - ++.+|.|+.+-..+.+
T Consensus 269 -lsnKal-LalLW~l~--p-~hp~LLpay~~~--d~-~~~~~---~~~~~~~yV~KPi~g--R-EG~nV~i~~~g~~~~~ 334 (397)
T PHA02117 269 -LSNKGL-LALLYERY--P-DCPWLVPAYVED--DF-DRENL---FTLENPKYVSKPLLS--R-EGNNIHIFEYGGESED 334 (397)
T ss_pred -hccHHH-HHHHHHhc--C-CCcccccccccc--cc-cccch---hccccCCEEeccCCC--c-CCCCEEEEECCeEEec
Confidence 457765 34444431 1 123334433210 10 00000 0011 2499999994 3 6778999866333322
Q ss_pred ----c-CCCeEEEecccC---CCc--EEEEEEECCEEEEE-EEecC
Q 019600 191 ----L-EPPLVLQEFVNH---GGV--LFKVYIVGEAIKVV-RRFSL 225 (338)
Q Consensus 191 ----l-~~p~vvQeFI~h---~g~--~~KV~VIGd~v~~~-~R~Sl 225 (338)
+ +.++|.|+|++= +|. .+=+|+|||+.... .|.+.
T Consensus 335 ~~g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 335 TDGNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred cCCCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 2 578999999984 333 46889999987754 77753
No 106
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=88.54 E-value=1.5 Score=43.85 Aligned_cols=87 Identities=13% Similarity=0.015 Sum_probs=56.2
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCc-EEEeeCC-CCCCCcceeeEEEeChhhHhcc----
Q 019600 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLV-ADGSAKSHELSLAYDQYSLKKL---- 191 (338)
Q Consensus 118 ~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~-a~Gs~~sh~m~iv~~~~~L~~l---- 191 (338)
...++|++ .|||+|++.++. +.++..+. ...++|| +|+|..+ ..|-..+.++.+..+.+++...
T Consensus 7 eak~lL~~-------yGIpvp~~~~~~-~~~ea~~~--a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~l 76 (392)
T PRK14046 7 QAKELLAS-------FGVAVPRGALAY-SPEQAVYR--ARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDL 76 (392)
T ss_pred HHHHHHHH-------cCCCCCCceEEC-CHHHHHHH--HHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHH
Confidence 34466665 489999999885 33333332 2458995 5999744 3344567788888888776542
Q ss_pred -C----------C-----CeEEEecccCCCcEEEEEEECC
Q 019600 192 -E----------P-----PLVLQEFVNHGGVLFKVYIVGE 215 (338)
Q Consensus 192 -~----------~-----p~vvQeFI~h~g~~~KV~VIGd 215 (338)
. . -+++|+++++ ++.|-+-+.-|
T Consensus 77 l~~~~~~~~~~~~g~~v~~vlVe~~~~~-~~E~ylgi~~D 115 (392)
T PRK14046 77 LGKKLVTHQTGPEGKPVQRVYVETADPI-ERELYLGFVLD 115 (392)
T ss_pred hcchhhhhccCCCCCeeeeEEEEEecCC-CcEEEEEEEEC
Confidence 1 1 2799999985 55665555544
No 107
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.12 E-value=1.6 Score=36.42 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=42.4
Q ss_pred EEEEEecc--c-ccccccchHHHhhhhhcceEEEEeeCCCCCCcC------------------------------CCccE
Q 019600 31 VVGYALTS--K-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ------------------------------GPFDI 77 (338)
Q Consensus 31 ~VGy~l~~--k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~q------------------------------g~~Dv 77 (338)
.||+.+-| + |..+-..-.|..+|.++|+++....++.-.-+. ..||+
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~~~Dv 81 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLDDFDV 81 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGGGSSE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccccCCE
Confidence 35555553 1 222233334788889999888777666521111 26999
Q ss_pred EEEccCch---hHH--HHHHHHHHhCCCceeeChHHHHH
Q 019600 78 VLHKLTGK---EWR--QILEEYRQTHPEVTVLDPPYAIQ 111 (338)
Q Consensus 78 ilhK~~~~---~~~--~~l~~~~~~~p~v~ViDp~~ai~ 111 (338)
|+.|--.. ++. -++-+.+ ++.|+.|||.|.+++
T Consensus 82 vlmRkDPPfD~~yi~aT~lLe~a-~~~gv~VvN~P~~lR 119 (119)
T PF02951_consen 82 VLMRKDPPFDMEYIYATYLLELA-ERQGVLVVNDPQSLR 119 (119)
T ss_dssp EEEE--S---HHHHHHHHHHHHH-HHTT-EEES-HHHHH
T ss_pred EEEecCCCCChHHHHHHHHHHHh-hhCCcEEEeChhhcC
Confidence 99986432 221 2233333 347999999999985
No 108
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=82.19 E-value=4.5 Score=40.18 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=54.2
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCC-CcEEEeeCCC-CCCCcceeeEEEeChhhHhcc----
Q 019600 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL---- 191 (338)
Q Consensus 118 ~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l---- 191 (338)
.--++|++. |||+|+..++.+ .++..+. ...++ .|+|+|+.+- +|--.+-++-++.+.++..+.
T Consensus 7 qaKelf~~~-------GiPvp~g~v~~s-~eea~~~--a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~ 76 (387)
T COG0045 7 QAKELFAKY-------GIPVPPGYVATS-PEEAEEA--AKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEI 76 (387)
T ss_pred HHHHHHHHc-------CCCCCCceeeeC-HHHHHHH--HHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHH
Confidence 344566654 899999988853 3233332 23354 7999998553 344456689999999776542
Q ss_pred -C------------CCeEEEecccCCCcEEEEE
Q 019600 192 -E------------PPLVLQEFVNHGGVLFKVY 211 (338)
Q Consensus 192 -~------------~p~vvQeFI~h~g~~~KV~ 211 (338)
. .-++++++++|..+.|=+-
T Consensus 77 lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Yls 109 (387)
T COG0045 77 LGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLS 109 (387)
T ss_pred hCcccccCcCCceeeEEEEEecCCCccceEEEE
Confidence 2 1279999999765454333
No 109
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=80.03 E-value=2.6 Score=40.87 Aligned_cols=66 Identities=12% Similarity=0.221 Sum_probs=45.3
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc---
Q 019600 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL--- 191 (338)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l--- 191 (338)
||..-+.+|.+. +|+.|+-. +++++ +.-|+|||...|- ++++-.++.+.+++.+.
T Consensus 124 ~~~~~~~lLekA-------gi~~P~~~---~~Pee---------Idr~VIVK~pgAk---ggRGyFiA~s~eef~ek~e~ 181 (361)
T COG1759 124 DRKLEYKLLEKA-------GLRIPKKY---KSPEE---------IDRPVIVKLPGAK---GGRGYFIASSPEEFYEKAER 181 (361)
T ss_pred chhhHHHHHHHc-------CCCCCccc---CChHH---------cCCceEEecCCcc---CCceEEEEcCHHHHHHHHHH
Confidence 556667778764 89999864 22322 3449999976654 58999999999887642
Q ss_pred --CC---------CeEEEeccc
Q 019600 192 --EP---------PLVLQEFVN 202 (338)
Q Consensus 192 --~~---------p~vvQeFI~ 202 (338)
+. -..+||||-
T Consensus 182 l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 182 LLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HHHcCCcchhhhhhceeeEEee
Confidence 11 367788874
No 110
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.11 E-value=2.2 Score=43.26 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCcEEEeeCCCCCCCcceeeEEEeChhhHhccCCCeEEEecccCC-------CcEEEEEEECC
Q 019600 160 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG-------GVLFKVYIVGE 215 (338)
Q Consensus 160 ~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~~p~vvQeFI~h~-------g~~~KV~VIGd 215 (338)
.-|+||||..|+ .+.+++++.+......+.. .++||||-.+ -.|+|||++=-
T Consensus 226 KrtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~rvy~lik 284 (565)
T KOG2158|consen 226 KRTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQRVYSLIK 284 (565)
T ss_pred cccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeeeeeeeeee
Confidence 349999987743 5668999976655444433 6788888543 46778887744
No 111
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=67.84 E-value=16 Score=31.14 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=49.4
Q ss_pred CCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHH
Q 019600 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILE 92 (338)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~ 92 (338)
..-+..+|+..+.+.=.+-. -+|..++.+.|..++.++.+..-...| =+|+|+.|.........+
T Consensus 35 ~~l~gk~v~~lF~e~StRTR--~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~- 111 (142)
T PF02729_consen 35 QLLKGKTVALLFFEPSTRTR--LSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGALEEL- 111 (142)
T ss_dssp TTTTTCEEEEEESS--HHHH--HHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHH-
T ss_pred ccCCCCEEEEEecCCCchhh--hhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchHHHHH-
Confidence 33456778877776322211 137789999999999999765333333 289999998775333333
Q ss_pred HHHHhCCCceeeChH
Q 019600 93 EYRQTHPEVTVLDPP 107 (338)
Q Consensus 93 ~~~~~~p~v~ViDp~ 107 (338)
+++..+||||-.
T Consensus 112 ---a~~~~vPVINa~ 123 (142)
T PF02729_consen 112 ---AEHSSVPVINAG 123 (142)
T ss_dssp ---HHHCSSEEEEEE
T ss_pred ---HHhccCCeEcCc
Confidence 344589999854
No 112
>PLN02235 ATP citrate (pro-S)-lyase
Probab=64.50 E-value=21 Score=36.12 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=44.8
Q ss_pred CCccCCcEEEE-ecCCCChhHHHHh-cCCCC-cEEEeeCCCC-CCCcceeeEEEeChhhHhcc-----CC----------
Q 019600 133 GKVDVPRQLVI-ERDASSIPDVVLK-AGLTL-PLVAKPLVAD-GSAKSHELSLAYDQYSLKKL-----EP---------- 193 (338)
Q Consensus 133 ~~i~~P~~~~~-~~~~~~~~~~l~~-~~l~f-P~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l-----~~---------- 193 (338)
.+||+|+..++ . ..+++.+.... ..|+. ++|+|+.+-. |--.+-++-++.+.++..+. ..
T Consensus 23 ~gipvP~~~v~~~-~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~ 101 (423)
T PLN02235 23 AGIDLPIRSAQVT-ESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGP 101 (423)
T ss_pred CCCCCCCCeeccC-CHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCcc
Confidence 48999999887 4 33333322222 12555 4699996643 44456778899999886652 21
Q ss_pred --CeEEEecccCC
Q 019600 194 --PLVLQEFVNHG 204 (338)
Q Consensus 194 --p~vvQeFI~h~ 204 (338)
-++++++++|.
T Consensus 102 v~~vLVEe~v~i~ 114 (423)
T PLN02235 102 ITTFIVEPFVPHD 114 (423)
T ss_pred EeEEEEEecCCCc
Confidence 25778888775
No 113
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=60.47 E-value=3.1 Score=45.70 Aligned_cols=232 Identities=16% Similarity=0.237 Sum_probs=122.2
Q ss_pred cccchHHHhhhhhcceEEEEeeCCCCCCc--CCC----------------------ccEEEEccCchhH---------HH
Q 019600 43 SFLQPKLEGLARNKGILFVAIDQNRPLSD--QGP----------------------FDIVLHKLTGKEW---------RQ 89 (338)
Q Consensus 43 ~~~~~~l~~~~~~~gi~~~~id~~~~l~~--qg~----------------------~DvilhK~~~~~~---------~~ 89 (338)
+++-.--+++.++.|+..+.|+|+-...+ +|- .|.|+.-+.++.. ..
T Consensus 397 DYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~g 476 (1435)
T KOG0370|consen 397 DYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAG 476 (1435)
T ss_pred eeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecc
Confidence 34444478888999999999999864432 232 3444433332210 11
Q ss_pred HHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHH-HhcCCCCcEEEee
Q 019600 90 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV-LKAGLTLPLVAKP 167 (338)
Q Consensus 90 ~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l-~~~~l~fP~VvKp 167 (338)
.+.+ +++.|+ -|.+.+.+.-||-.-.+.|.+. +.++-++...+ .+.+++ +...++||+|+..
T Consensus 477 vf~~-----~~vkvLgt~i~ti~ttedr~lfa~am~ei-------~e~ia~s~a~~----sie~al~aae~l~ypvivRa 540 (1435)
T KOG0370|consen 477 VFAQ-----YGVKVLGTPIQTIITTEDRDLFARALNEI-------NEKIAPSEAVS----TIEEALEAAERLGYPVIVRA 540 (1435)
T ss_pred cccc-----cchhhhCCCcccceeeccHHHHHHHHHhh-------cccccchhhHh----HHHHHHHHHHhcCcHHHHHH
Confidence 2223 344444 3567788888898888888765 33333333222 122222 3467999999996
Q ss_pred CCCCCCCcceeeEEEeChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEE-EEEEecCCCCCcccccCCCce
Q 019600 168 LVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFSLPDVTKQDLSTSAGV 239 (338)
Q Consensus 168 ~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~g~~~KV~VIGd~v~-~~~R~Slp~~~~~~~~~~~g~ 239 (338)
.-+-|. -+-....|+++|.++ .+.++++.=+. +=..+-+=||.|.+- |..--..-|+.+-.+.+.+..
T Consensus 541 ayalgg---lgSgfa~n~eeL~~l~~~a~a~s~QilvekSlk-GwkevEyevvrDa~~nciTvcnmen~DplgihtGdSi 616 (1435)
T KOG0370|consen 541 AYALGG---LGSGFANNEEELQDLAAQALALSPQILVEKSLK-GWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSI 616 (1435)
T ss_pred HHHhcC---ccccccccHHHHHHHHhhccccCceeeehhhhc-cccceEEEEEeccccchhhhcCCcccCcceeeccceE
Confidence 554322 233467899998875 34466665553 222445556655432 222222333333222222111
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 240 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 240 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.- +. ...++.+ ....++..|.++-+.||.-- .++-...+..+ -.|+|||||+-=+
T Consensus 617 Vv------ap----sqtlsd~-----ey~mlrttaikVirhlgvvGEcniQyaL~p~s-~~y~IiEVNarLS 672 (1435)
T KOG0370|consen 617 VV------AP----SQTLSDE-----EYQMLRTTAIKVIRHLGVVGECNIQYALNPYS-LEYRIIEVNARLS 672 (1435)
T ss_pred EE------ee----ccccChH-----HHHHHHhcchhheeccCCcccccceeeecccc-eeEEEEEEEeEEe
Confidence 10 00 0011000 02346677778888777542 23555555433 3799999997543
No 114
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=59.11 E-value=9.8 Score=38.51 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=28.7
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCC---CCcEEEeeCCC
Q 019600 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL---TLPLVAKPLVA 170 (338)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l---~fP~VvKp~~a 170 (338)
+...++|++ .|||+|+..++. +.+++.+.. ..+ ++|+|+|...-
T Consensus 33 yqaK~LL~~-------~GIpvp~~~va~-t~eea~~aa--~~l~~~~~pvVvKaqv~ 79 (422)
T PLN00124 33 YQGAELMSK-------YGVNVPKGAAAS-SLDEVKKAL--EKMFPDEGEVVVKSQIL 79 (422)
T ss_pred HHHHHHHHH-------cCCCCCCceeeC-CHHHHHHHH--HHhcccCCcEEEEEEec
Confidence 345667775 489999999885 333333221 235 68999999853
No 115
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=49.58 E-value=48 Score=32.52 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred CceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~kK-~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+|+..+.+.= +..+ +|..++.++|..++.+|++..-...| =+|+|+.|...+.....+.
T Consensus 43 L~gk~l~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a- 118 (334)
T PRK12562 43 LTGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLA- 118 (334)
T ss_pred CCCCEEEEEECCCCchhHH---HHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHH-
Confidence 34567888777632 2222 37889999999999998765222222 3899999987653333333
Q ss_pred HHHhCCCceeeChH
Q 019600 94 YRQTHPEVTVLDPP 107 (338)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (338)
++-++||||-.
T Consensus 119 ---~~~~vPVINa~ 129 (334)
T PRK12562 119 ---EYAGVPVWNGL 129 (334)
T ss_pred ---HhCCCCEEECC
Confidence 34579999953
No 116
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=47.98 E-value=19 Score=35.32 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=19.0
Q ss_pred CCcEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 282 GLRLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 282 Gl~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
-+.++|+|++++. +| +++|||.|.-.+
T Consensus 67 ~~~~~g~Dl~r~~-dG-~w~VleDn~~~P 93 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DG-RWRVLEDNTRAP 93 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-SS-
T ss_pred EEEEEEEeeeECC-CC-CEEEEEecCCCC
Confidence 4889999999986 46 799999997654
No 117
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=46.67 E-value=11 Score=37.30 Aligned_cols=171 Identities=21% Similarity=0.189 Sum_probs=87.8
Q ss_pred eEEEEE-EecccccccccchHHHhhhhhcceEEEEeeCCCC-CCcCCCc----cE---EEEccCchhH--HHHHHHHHHh
Q 019600 29 LVVVGY-ALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRP-LSDQGPF----DI---VLHKLTGKEW--RQILEEYRQT 97 (338)
Q Consensus 29 ~~~VGy-~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~-l~~qg~~----Dv---ilhK~~~~~~--~~~l~~~~~~ 97 (338)
+.++++ ++...+...-.-+=|...|.+.|++-..+-.+.- +.+.|.| |= .+-|+..=++ ++.+..- -+
T Consensus 170 ~~~~~~s~~~D~~Ed~~tv~~LqD~a~~AG~et~fl~i~~igl~e~G~f~D~~n~~i~~lfKlypwE~m~~e~~~~~-l~ 248 (387)
T COG0754 170 RDRMGFSICQDTAEDRGTVQYLQDCAQEAGFETEFLYIDDIGLGEDGQFTDLDNQVIERLFKLYPWEDMLREELAQN-LE 248 (387)
T ss_pred cCceEEEeecChhhhhhHHHHHHHHHHhcCcccceeeehhcccCccceeecCCcchHhHHHhhcCHHHHHHHHHHHH-hc
Confidence 445555 3444544444444467788888877665544331 1122211 00 1113332111 1222221 25
Q ss_pred CCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcce
Q 019600 98 HPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 98 ~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
.+++.+|+|+=.+ .+.||.. +-+|-+.- ++++--.|.+... +.. . ..+---|.||+.+ - ++-
T Consensus 249 ~~~~~~lEPaWk~-ilsNK~l-LplLW~~f---PnHp~LL~t~F~~--~~~--~------~~~~~yv~KPl~g--R-EGa 310 (387)
T COG0754 249 NARTIFLEPAWKS-ILSNKAL-LPLLWERF---PNHPNLLPTYFEP--DDE--E------KLGESYVRKPLFG--R-EGA 310 (387)
T ss_pred CCCcEEechhHHH-HhccccH-HHHHHHhC---CCCcccccccCCC--Ccc--c------cchhhhhcccccc--c-cCC
Confidence 5899999998554 4457765 44454321 1233334443322 111 1 1111269999994 2 566
Q ss_pred eeEEEeCh-hhHhcc-----CCCeEEEecccCCCcEEEEEEECCEEE
Q 019600 178 ELSLAYDQ-YSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (338)
Q Consensus 178 ~m~iv~~~-~~L~~l-----~~p~vvQeFI~h~g~~~KV~VIGd~v~ 218 (338)
++.|+.+. +.+... +.++|+|||.+=+...-+.++||..++
T Consensus 311 Nv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v 357 (387)
T COG0754 311 NVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVV 357 (387)
T ss_pred CeeEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEEEEE
Confidence 89999874 445443 567899999987654445555554333
No 118
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=45.15 E-value=77 Score=25.15 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=25.1
Q ss_pred EecccccccccchHHHhhhhhcceEEEEeeCCC
Q 019600 35 ALTSKKTKSFLQPKLEGLARNKGILFVAIDQNR 67 (338)
Q Consensus 35 ~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~ 67 (338)
.-.+.....+....+..++++.|+++..+|.+.
T Consensus 6 ~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 6 ACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 334455566666667888999999999999976
No 119
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=41.55 E-value=51 Score=32.35 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=47.4
Q ss_pred CceEEEEEEecccc-cccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~kK-~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+++..+.+.= +... +|..++.++|-.++.+|.+..-...| =+|+|..|.........+.
T Consensus 43 L~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a- 118 (336)
T PRK03515 43 LTGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLA- 118 (336)
T ss_pred CCCCEEEEEecCCChhHHH---HHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHH-
Confidence 44567777776522 2222 37889999999999998865222222 2899999987754333333
Q ss_pred HHHhCCCceeeCh
Q 019600 94 YRQTHPEVTVLDP 106 (338)
Q Consensus 94 ~~~~~p~v~ViDp 106 (338)
++.++||||=
T Consensus 119 ---~~~~vPVINa 128 (336)
T PRK03515 119 ---EYAGVPVWNG 128 (336)
T ss_pred ---HhCCCCEEEC
Confidence 3457999993
No 120
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=41.40 E-value=45 Score=32.67 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=47.1
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+|+..+.+. =+..+ +|..++.+.|..++.+|++..-...| =+|+|+.|.........+.
T Consensus 44 L~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~~~~~~a- 119 (331)
T PRK02102 44 LEGKNIALIFEKTSTRTRC---AFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELA- 119 (331)
T ss_pred CCCCEEEEEeCCCChhHHH---HHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchHHHHHHH-
Confidence 3456777777662 22222 27889999999999998765222222 3899999987653333333
Q ss_pred HHHhCCCceeeCh
Q 019600 94 YRQTHPEVTVLDP 106 (338)
Q Consensus 94 ~~~~~p~v~ViDp 106 (338)
++-++||||=
T Consensus 120 ---~~~~vPVINa 129 (331)
T PRK02102 120 ---KYSGVPVWNG 129 (331)
T ss_pred ---HhCCCCEEEC
Confidence 3357999994
No 121
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=41.05 E-value=41 Score=30.18 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=37.5
Q ss_pred HHHhhhhhcceEEEEeeCCCCCCcCCCccEEEE---ccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHH
Q 019600 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLH---KLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQS 118 (338)
Q Consensus 48 ~l~~~~~~~gi~~~~id~~~~l~~qg~~Dvilh---K~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~ 118 (338)
.+-+++.++|+.+..|+++.+|+ .|.+|+- .+.+....+.|.+|.++ -|.+|+.+...+..-.++..
T Consensus 34 ~~y~al~~~gi~vDvv~~~~dL~---~Ykllv~P~~~~l~~~~~~~L~~yV~~-GG~li~~~~tg~~d~~~~~~ 103 (207)
T PF08532_consen 34 GWYRALRELGIPVDVVSPDDDLS---GYKLLVLPSLYILSPEFAERLRAYVEN-GGTLILTPRTGVKDENGRVR 103 (207)
T ss_dssp HHHHHHHTTT--EEEE-TTS--T---T-SEEEES--SC--HHH---HHHHHT--SS-EEE-TTTT-B-TTS---
T ss_pred HHHHHHHHcCCceEEecCcCCcc---cCcEEEEeeEEEEChHHHHHHHHHHHC-CCEEEEEcccCCcCCCCcCc
Confidence 46678899999999999988665 4887773 23345667889999965 78888998888877777664
No 122
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=40.28 E-value=52 Score=31.70 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=47.8
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+|+..+.+. =+..+ +|..++.+.|-.++.+|.+..-...| =+|+|..|...... +++
T Consensus 41 L~gk~v~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~---~~~ 114 (304)
T PRK00779 41 LKGKTLAMIFEKPSTRTRV---SFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHET---LEE 114 (304)
T ss_pred CCCCEEEEEecCCCchHHH---HHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhH---HHH
Confidence 4456777777662 22222 37889999999999998765322222 28999999876433 333
Q ss_pred HHHhCCCceeeChH
Q 019600 94 YRQTHPEVTVLDPP 107 (338)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (338)
+ +++-+++|||=-
T Consensus 115 ~-a~~~~vPVINag 127 (304)
T PRK00779 115 L-AEYSTVPVINGL 127 (304)
T ss_pred H-HHhCCCCEEeCC
Confidence 3 344578999954
No 123
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=39.10 E-value=54 Score=31.62 Aligned_cols=75 Identities=12% Similarity=0.051 Sum_probs=48.5
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-.+.+++..+.+ +=+..+ +|..++.++|-.++.++.+..-...| =+|+|+.|...... +++
T Consensus 36 L~gk~~~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~~---~~~ 109 (302)
T PRK14805 36 LAGKSVVMLFEKPSLRTRV---SFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHST---IEQ 109 (302)
T ss_pred CCCCEEEEEecCCCchHHH---HHHHHHHHcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChhH---HHH
Confidence 445677776665 222222 27889999999999998754222222 38999999876533 333
Q ss_pred HHHhCCCceeeChHH
Q 019600 94 YRQTHPEVTVLDPPY 108 (338)
Q Consensus 94 ~~~~~p~v~ViDp~~ 108 (338)
+. ++-++||||-..
T Consensus 110 ~a-~~~~vPVINa~~ 123 (302)
T PRK14805 110 LA-EHGSVPVINALC 123 (302)
T ss_pred HH-HhCCCCEEECCC
Confidence 32 345799999654
No 124
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=38.93 E-value=58 Score=31.40 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=47.3
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+|+-.+-+ +=+..+ +|..++.++|-.++.+|.+..-...| =+|+|+.|..+......+.
T Consensus 37 L~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a- 112 (304)
T TIGR00658 37 LKGKTLALIFEKPSTRTRV---SFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELA- 112 (304)
T ss_pred CCCCEEEEEecCCCcchHH---HHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHH-
Confidence 345677776665 222222 27889999999999998765322222 3899999987653333333
Q ss_pred HHHhCCCceeeCh
Q 019600 94 YRQTHPEVTVLDP 106 (338)
Q Consensus 94 ~~~~~p~v~ViDp 106 (338)
++-++||||=
T Consensus 113 ---~~~~vPVINa 122 (304)
T TIGR00658 113 ---KYASVPVING 122 (304)
T ss_pred ---HhCCCCEEEC
Confidence 3457999994
No 125
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=38.84 E-value=60 Score=31.74 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=47.3
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+|+..+.+ +=+..+ +|..++.++|-.++.+|.+..-...| =+|+|+.|.........+.
T Consensus 43 L~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a- 118 (332)
T PRK04284 43 LKGKNIALIFEKDSTRTRC---AFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLA- 118 (332)
T ss_pred CCCCEEEEEecCCChhHHH---HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHH-
Confidence 445677777766 222222 27889999999999998875322222 2899999987653333333
Q ss_pred HHHhCCCceeeCh
Q 019600 94 YRQTHPEVTVLDP 106 (338)
Q Consensus 94 ~~~~~p~v~ViDp 106 (338)
++-++||||-
T Consensus 119 ---~~s~vPVINa 128 (332)
T PRK04284 119 ---EYSGVPVWNG 128 (332)
T ss_pred ---HhCCCCEEEC
Confidence 3357999993
No 126
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.49 E-value=37 Score=35.18 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=27.6
Q ss_pred CcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccch
Q 019600 283 LRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 318 (338)
Q Consensus 283 l~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~ 318 (338)
-.+||+|+++++ .+ .+++||||++|.++.-....
T Consensus 377 FElyG~DfliD~-~l-kpwLiEiNssP~~~~t~~~d 410 (497)
T KOG2157|consen 377 FELYGFDFLIDE-AL-KPWLIEINASPDLTQTTKND 410 (497)
T ss_pred hhhhCcceeecC-CC-CeEEEEeecCCcccccchhh
Confidence 468999999997 45 68999999999999554443
No 127
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins.
Probab=37.93 E-value=1.9e+02 Score=28.29 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCCeEEEecccCCCcEEEEEEECC-EEEEEEEecC
Q 019600 192 EPPLVLQEFVNHGGVLFKVYIVGE-AIKVVRRFSL 225 (338)
Q Consensus 192 ~~p~vvQeFI~h~g~~~KV~VIGd-~v~~~~R~Sl 225 (338)
....++||=| .|.=|.++|-++ .+.+..|.+.
T Consensus 24 ~~ewvatEKl--hGaNfsi~~~~~~~i~~akR~~~ 56 (325)
T TIGR02307 24 LTEWVAREKI--HGTNFSIIIERDFKVTCAKRTGI 56 (325)
T ss_pred CceEEEEEEe--cCcceEEEEeCCceEEEeecccc
Confidence 4489999999 588899999988 8888888853
No 128
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=37.60 E-value=61 Score=31.21 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=54.0
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeC-CCCCCcCC------------CccEEEEccCchhHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQ-NRPLSDQG------------PFDIVLHKLTGKEWRQILE 92 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~-~~~l~~qg------------~~DvilhK~~~~~~~~~l~ 92 (338)
-...+|+..+.+ +=+..+ +|..++.++|-..+.++. +..-...| =+|+|..|.........+.
T Consensus 37 L~gk~v~~lF~~pSTRTR~---SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a 113 (301)
T TIGR00670 37 LKGKILANLFFEPSTRTRL---SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAA 113 (301)
T ss_pred CCCCEEEEEeccCCchhHh---HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHH
Confidence 345567766655 223322 278899999999999998 44222222 2899999987654333333
Q ss_pred HHHHhCCCceeeChHHH-----HHHhccHHHHHH
Q 019600 93 EYRQTHPEVTVLDPPYA-----IQHLHNRQSMLQ 121 (338)
Q Consensus 93 ~~~~~~p~v~ViDp~~a-----i~~l~dR~~~~~ 121 (338)
++-++||||-... .+.|.|=+.+.+
T Consensus 114 ----~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e 143 (301)
T TIGR00670 114 ----EVSEVPVINAGDGSNQHPTQTLLDLYTIYE 143 (301)
T ss_pred ----hhCCCCEEeCCCCCCCCcHHHHHHHHHHHH
Confidence 3357999998752 344555344333
No 129
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=37.51 E-value=65 Score=31.55 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=48.2
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+|+..+.+. =+..+ +|..++.++|-.++.+|.+..-...| =+|+|..|.........+.
T Consensus 44 L~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a- 119 (334)
T PRK01713 44 LKGKNIALIFEKTSTRTRC---AFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELA- 119 (334)
T ss_pred CCCCEEEEEeCCCCchHHH---HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHH-
Confidence 4466788877762 22222 27889999999999998765222222 3899999987654433333
Q ss_pred HHHhCCCceeeChH
Q 019600 94 YRQTHPEVTVLDPP 107 (338)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (338)
++-++||||-.
T Consensus 120 ---~~~~vPVINa~ 130 (334)
T PRK01713 120 ---EYAGVPVFNGL 130 (334)
T ss_pred ---HhCCCCEEECC
Confidence 33579999953
No 130
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=34.37 E-value=4.8 Score=39.10 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=59.6
Q ss_pred CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCccee
Q 019600 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 99 p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
..+.-+|.-.+...+.++..+...+.+. ++..|.-.-....+..+...+ .-+++|+|.||+.+ | +-.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~vvfp~lhG~~gEDg~iqg~l--e~~giPyvg~gv~~--S--a~~ 101 (317)
T COG1181 35 YDVTPVDITEAGLWMLDKEVTKRVLQKA-------DVVFPVLHGPYGEDGTIQGLL--ELLGIPYVGKGVLA--S--AGA 101 (317)
T ss_pred ceeEEEeccccceEEeccccchhhcccC-------CEEEEeCCCCCCCCchHHHHH--HHhCCCEecCchhh--h--hhc
Confidence 3455566666666666665555544432 344443222211222344433 34799999999984 4 233
Q ss_pred eEEEeCh-----hhHhcc-------C--CCeEEEecccCCCcEEEEEEECCEEEEE
Q 019600 179 LSLAYDQ-----YSLKKL-------E--PPLVLQEFVNHGGVLFKVYIVGEAIKVV 220 (338)
Q Consensus 179 m~iv~~~-----~~L~~l-------~--~p~vvQeFI~h~g~~~KV~VIGd~v~~~ 220 (338)
|..++.. +++... . .+.++++|+ .|-.|++||.+++...+
T Consensus 102 mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~gSS 155 (317)
T COG1181 102 MDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREGSS 155 (317)
T ss_pred ccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCccce
Confidence 4444433 333322 1 345566677 48889999999987755
No 131
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=32.78 E-value=1.1e+02 Score=32.63 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=88.7
Q ss_pred HHhhhhhcceEEEEe-eCCCC-CCcC--------CCccEEEEccCchhHHHH-HHHH---------------------HH
Q 019600 49 LEGLARNKGILFVAI-DQNRP-LSDQ--------GPFDIVLHKLTGKEWRQI-LEEY---------------------RQ 96 (338)
Q Consensus 49 l~~~~~~~gi~~~~i-d~~~~-l~~q--------g~~DvilhK~~~~~~~~~-l~~~---------------------~~ 96 (338)
|.++|++.|++...+ +++.- +.+. .+.|++. |+..=+|... +++. ..
T Consensus 399 L~d~a~qAG~~t~~~~~iedL~~d~~G~~~D~dg~~I~~vf-KlyPWE~~~~dira~~d~d~~~~~~f~g~~~h~~~L~~ 477 (619)
T PRK10507 399 MQQALHQAGFETKILRGLDELRWDAAGQLIDGDGRLVNCVW-KTWAWETALDQIREVSDREFAAVPIRTGHPQNEVRLID 477 (619)
T ss_pred HHHHHHHCCCceEEecCHHHeEECCCCcEECCCCCEeeeee-ecccHHHhhhHHhhhccchhcccccccccccchhHHHH
Confidence 677899999998888 35441 1111 2455555 5443222111 1111 11
Q ss_pred --hCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCC
Q 019600 97 --THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (338)
Q Consensus 97 --~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (338)
.++.+.+|+|+-++. +.||.. +-+|-++- + .++--.|.+... + .. + .+-..|.||+.| -
T Consensus 478 lL~~~~~~~iEP~Wk~l-lsNKai-LplLW~l~--p-~Hp~LLpayfe~--d----~~-l----~~~~yV~KPi~G--R- 538 (619)
T PRK10507 478 VLLRPEVLVFEPLWTVI-PGNKAI-LPVLWSLF--P-HHRYLLDTDFTV--N----DE-L----VKTGYAVKPIAG--R- 538 (619)
T ss_pred hhccCceEEEcccHHhh-cccHHH-HHHHHHhC--C-CCcccccccccC--C----cc-c----ccCCeEeccCCC--c-
Confidence 236799999997664 457765 45555441 1 222333433211 1 11 1 122599999994 3
Q ss_pred cceeeEEEeCh-hhHhc----c-CCCeEEEecccCC---C--cEEEEEEECCEEEEE-EEec
Q 019600 175 KSHELSLAYDQ-YSLKK----L-EPPLVLQEFVNHG---G--VLFKVYIVGEAIKVV-RRFS 224 (338)
Q Consensus 175 ~sh~m~iv~~~-~~L~~----l-~~p~vvQeFI~h~---g--~~~KV~VIGd~v~~~-~R~S 224 (338)
++.+|.|+.+. ..+.+ + +.+.|.|+|++=+ | ..+=+|+|||+.... .|.+
T Consensus 539 EG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 539 CGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred CCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 67789998763 22222 2 5679999999842 2 245789999987755 7765
No 132
>PLN02342 ornithine carbamoyltransferase
Probab=31.60 E-value=84 Score=31.01 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=46.9
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+|+..+.+. =+..+ +|..++.++|-.++.+|.+..-...| =+|+|+.|...... +++
T Consensus 83 L~gk~va~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y~D~IviR~~~~~~---~~~ 156 (348)
T PLN02342 83 FKGKSMAMIFTKPSMRTRV---SFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMARVFAHQD---VLD 156 (348)
T ss_pred CCCCEEEEEecCCCcchHH---HHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEeCCChHH---HHH
Confidence 3456777776652 22222 27889999999999998765322222 38999999876433 333
Q ss_pred HHHhCCCceeeCh
Q 019600 94 YRQTHPEVTVLDP 106 (338)
Q Consensus 94 ~~~~~p~v~ViDp 106 (338)
+. ++-+++|||=
T Consensus 157 la-~~~~vPVINA 168 (348)
T PLN02342 157 LA-EYSSVPVING 168 (348)
T ss_pred HH-HhCCCCEEEC
Confidence 32 4457999994
No 133
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.07 E-value=2.9e+02 Score=22.37 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=39.9
Q ss_pred ccccccchHHHhhhhhcceEEEEeeCCC----------CCCc-CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChH
Q 019600 40 KTKSFLQPKLEGLARNKGILFVAIDQNR----------PLSD-QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP 107 (338)
Q Consensus 40 K~~~~~~~~l~~~~~~~gi~~~~id~~~----------~l~~-qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~ 107 (338)
+..++.. .+.+...++|+++.+|+++. .+.+ .++.|+++.=...+.....+++-.+...+.+++-|-
T Consensus 11 ~~~~~g~-~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 11 NPGKFGY-RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp STTSHHH-HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred CCCChHH-HHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 3344553 34444455999999999987 2222 267888877666555666777777777777777776
No 134
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=30.55 E-value=98 Score=30.38 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=48.0
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-...+|+..+.+ +=+... +|..++.++|-.++.++.+..-...| =+|+|..|...... +++
T Consensus 40 L~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dtarvls~y~D~iviR~~~~~~---~~~ 113 (338)
T PRK02255 40 LKNKTLGMIFEQSSTRTRV---SFETAMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVDRHQT---VVE 113 (338)
T ss_pred CCCCEEEEEeCCCCcchHH---HHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCcEEEEecCChHH---HHH
Confidence 345677777766 222222 27889999999999998765222222 38999999876433 333
Q ss_pred HHHhCCCceeeChH
Q 019600 94 YRQTHPEVTVLDPP 107 (338)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (338)
+ +++-++||||-.
T Consensus 114 ~-a~~~~vPVINa~ 126 (338)
T PRK02255 114 L-AKYATVPVINGM 126 (338)
T ss_pred H-HHhCCCCEEECC
Confidence 3 345689999943
No 135
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.46 E-value=60 Score=25.60 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=34.1
Q ss_pred cccchHHHhhhhhcceEEE--EeeCCCCCCcCCCccEEEEccCchhHHH---HHHHHHHh-CCCceeeChHH
Q 019600 43 SFLQPKLEGLARNKGILFV--AIDQNRPLSDQGPFDIVLHKLTGKEWRQ---ILEEYRQT-HPEVTVLDPPY 108 (338)
Q Consensus 43 ~~~~~~l~~~~~~~gi~~~--~id~~~~l~~qg~~DvilhK~~~~~~~~---~l~~~~~~-~p~v~ViDp~~ 108 (338)
|+.-..+.++++++|+++. ..+...--.....+|+||. +.+.+. .+++.... +-.+.+|||-.
T Consensus 17 S~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill---~pqi~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 17 SLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLL---APQVAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEE---CchHHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 4455678889999998653 3333321112346899983 323333 33333322 23467787753
No 136
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=29.87 E-value=75 Score=30.54 Aligned_cols=36 Identities=22% Similarity=0.595 Sum_probs=26.7
Q ss_pred HHHHHHhCCcE------eEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 275 KELRRQLGLRL------FNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 275 ~~l~~~LGl~l------~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
..+.+..|.++ =-||+++.. ++..|+||+|++-|=.
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~gG 220 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGSGG 220 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecCCC
Confidence 44555677777 559999964 4579999999998833
No 137
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.17 E-value=1.8e+02 Score=27.83 Aligned_cols=85 Identities=19% Similarity=0.328 Sum_probs=50.9
Q ss_pred eEEEeccc-CCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHH
Q 019600 195 LVLQEFVN-HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERL 273 (338)
Q Consensus 195 ~vvQeFI~-h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~l 273 (338)
+++-++-+ |++-.|||||=.++.+....|-..|. |++- . . . .+.++.+
T Consensus 165 LvLrkWc~l~p~~EFRcFVKsn~lvg~~QRd~tny-----------Yd~l--~---------e---~------kd~~k~l 213 (334)
T KOG2983|consen 165 LVLRKWCPLKPEMEFRCFVKSNELVGICQRDVTNY-----------YDVL--L---------E---E------KDLLKGL 213 (334)
T ss_pred hhHhhhcCCCcCceEEEEEeccceeeeeeccchhH-----------HHHH--H---------H---H------HHHHHHH
Confidence 44545444 57999999999999887644433221 1110 0 0 0 1222333
Q ss_pred HHH-----HHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 274 AKE-----LRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 274 A~~-----l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
... +.-.+--.-|-|||-++.. + +.++||+|.|=|-+
T Consensus 214 I~eff~d~i~~kF~dedfvfDVYi~k~-~-kv~lID~Npf~~~T 255 (334)
T KOG2983|consen 214 IEEFFKDKILFKFPDEDFVFDVYITKE-R-KVWLIDFNPFCGST 255 (334)
T ss_pred HHHHHHhhhhccCCCCCeeEEEEecCC-C-cEEEEeccCccCcc
Confidence 322 3333455567899999864 3 79999999998744
No 138
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=28.89 E-value=96 Score=30.11 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=51.2
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
....++..+.. +=+..++ |.-++.+.|-..+.++++..-..-+ =+|+|..|...+.....+.+|
T Consensus 43 ~gk~laliFeK~STRTR~S---Feva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~~D~I~~R~~~~~~ve~lA~~ 119 (310)
T COG0078 43 KGKNLALIFEKTSTRTRVS---FEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGFSHETLEELAKY 119 (310)
T ss_pred CCceEEEEecCCCchhhhh---HHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhhhheEEEecccHHHHHHHHHh
Confidence 46778887765 2233333 7779999999999999887333222 389999999886554444444
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
.+|||||-+
T Consensus 120 ----s~VPViNgL 128 (310)
T COG0078 120 ----SGVPVINGL 128 (310)
T ss_pred ----CCCceEccc
Confidence 589999987
No 139
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=28.63 E-value=1.1e+02 Score=29.50 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=49.4
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------C-ccEEEEccCchhHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------P-FDIVLHKLTGKEWRQILE 92 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~-~DvilhK~~~~~~~~~l~ 92 (338)
-...+++-.+.+ +=+..+ +|..++.++|-..+.++.+..-...| = +|+|..|...+.....+.
T Consensus 43 L~gk~~~~lF~~pSTRTR~---SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a 119 (305)
T PRK00856 43 LRGKTVANLFFEPSTRTRL---SFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLA 119 (305)
T ss_pred CCCcEEEEEeccCCcchHH---HHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHH
Confidence 345667766655 222222 37889999999999998865222211 2 899999987765444444
Q ss_pred HHHHhCCCceeeChHH
Q 019600 93 EYRQTHPEVTVLDPPY 108 (338)
Q Consensus 93 ~~~~~~p~v~ViDp~~ 108 (338)
+| ..+||||-..
T Consensus 120 ~~----~~vPVINa~~ 131 (305)
T PRK00856 120 ES----SDVPVINAGD 131 (305)
T ss_pred HH----CCCCEEECCC
Confidence 44 5799999864
No 140
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=28.58 E-value=34 Score=26.93 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=15.6
Q ss_pred EecccCC--CcEEEEEEECCE
Q 019600 198 QEFVNHG--GVLFKVYIVGEA 216 (338)
Q Consensus 198 QeFI~h~--g~~~KV~VIGd~ 216 (338)
+.|+||+ |-+|+|..+|+.
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~ 23 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEG 23 (88)
T ss_dssp --EEEETTTEEEEEEEEECTT
T ss_pred cccccCCccchheeeeeCCCc
Confidence 6799998 999999999984
No 141
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=26.48 E-value=2.1e+02 Score=28.73 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=38.3
Q ss_pred EEEeeCCCCCCCcceeeEEEeChhhHhccC----------------CCeEEEecccCCCc------EEEEEEECCEEEEE
Q 019600 163 LVAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHGGV------LFKVYIVGEAIKVV 220 (338)
Q Consensus 163 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~vvQeFI~h~g~------~~KV~VIGd~v~~~ 220 (338)
+|+|... |+ .+-++..|.+.+++..++ ..+++||=|.+--+ .==||+||.+|++.
T Consensus 260 ViVKADa--GT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vvgg 336 (403)
T TIGR02049 260 VIVKADA--GT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVTGG 336 (403)
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEeEE
Confidence 4677333 55 667777888888877651 14899998876322 12478899888876
Q ss_pred -EEe
Q 019600 221 -RRF 223 (338)
Q Consensus 221 -~R~ 223 (338)
.|-
T Consensus 337 fYRv 340 (403)
T TIGR02049 337 FYRV 340 (403)
T ss_pred EEEe
Confidence 443
No 142
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=26.45 E-value=2.4e+02 Score=26.31 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhhccCCCc--ccCCCceEEEEEEecccccccc---cchHHHhhhhhcceEEEEeeCC
Q 019600 5 KEEIEEQTREEELLSFPQ--TQQQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQN 66 (338)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~VGy~l~~kK~~~~---~~~~l~~~~~~~gi~~~~id~~ 66 (338)
++.|.+-++++.--..+. .....+..+||+.++.-. ..| ....+.++|+++|+++...+..
T Consensus 35 r~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~-~~~~~~l~~gi~~~~~~~g~~~~~~~~~ 100 (328)
T PRK11303 35 VEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLE-NTSYARIAKYLERQARQRGYQLLIACSD 100 (328)
T ss_pred HHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCC-CchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 445555666666432222 123445679999886422 112 1234666788899998776543
No 143
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=25.34 E-value=1.9e+02 Score=24.14 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=37.3
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccC---chhHHHHHHHHHHhCCCceeeCh
Q 019600 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT---GKEWRQILEEYRQTHPEVTVLDP 106 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~---~~~~~~~l~~~~~~~p~v~ViDp 106 (338)
..+.+++.+.|+.+..|+++..+. .|++|+.=.. +....+.|++|.++ -|+++.-|
T Consensus 29 ~~~~~~l~~~gi~~d~v~~~~~l~---~y~~vi~P~~~~~~~~~~~~l~~~v~~-GG~li~~~ 87 (154)
T cd03143 29 LALYRALRELGIPVDVVPPDADLS---GYKLVVLPDLYLLSDATAAALRAYVEN-GGTLVAGP 87 (154)
T ss_pred HHHHHHHHHCCCCEEEECCCCCcc---cCCEEEECchhcCCHHHHHHHHHHHHC-CCEEEEec
Confidence 346778899999999998766554 7888774322 23445677777754 55655544
No 144
>PF01725 Ham1p_like: Ham1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae (Baker's yeast) HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. S. cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions [].; GO: 0016787 hydrolase activity; PDB: 3TQU_A 1VP2_B 3S86_D 1B78_A 2MJP_B 2Q16_A 2PYU_A 1K7K_A 2ZTI_A 2DVP_A ....
Probab=25.06 E-value=71 Score=28.50 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCC-----CCCcccchHHHHHHHHHHHHhh
Q 019600 268 PLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG-----YGKMPEYEHIFTDFLLSLTQSR 332 (338)
Q Consensus 268 ~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg-----~~gv~~~~~~l~~~l~~~i~~~ 332 (338)
+....=|+.+++.+|.- +|.|+ +| ++|--.|.||| |-|...-...-.+.|++.+...
T Consensus 47 enA~~KA~~~~~~~~~p-----vi~dD-SG--L~v~aL~g~PG~~s~r~~g~~~~~~~~~~~ll~~l~~~ 108 (189)
T PF01725_consen 47 ENALIKAKAAAQQLGKP-----VIADD-SG--LEVDALNGFPGVYSARFAGPEATDEEGNEKLLKLLSGL 108 (189)
T ss_dssp HHHHHHHHHHHHHHSSS-----EEEEE-EE--EEEGGGTTTBGGGHCCCC-TTS-HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhCCC-----EEEeC-cE--EeHhhhCCCcCCceEEEecCCCCHHHHHHHHHHHhcCC
Confidence 44456678888888888 56664 66 66666999999 3333333455666777776654
No 145
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=24.92 E-value=1.8e+02 Score=22.96 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=16.6
Q ss_pred chHHHhhhhhcceEEEEeeCCC
Q 019600 46 QPKLEGLARNKGILFVAIDQNR 67 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~ 67 (338)
..-+..++++.|++++.++.+.
T Consensus 16 ~~~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 16 KNIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred HHHHHHHHHHCCCEEEEcCCCC
Confidence 3446667899999999887754
No 146
>PLN02527 aspartate carbamoyltransferase
Probab=24.27 E-value=1.3e+02 Score=28.97 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=53.6
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCC---CCCCcC-----------CCccEEEEccCchhHHHHH
Q 019600 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQN---RPLSDQ-----------GPFDIVLHKLTGKEWRQIL 91 (338)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~---~~l~~q-----------g~~DvilhK~~~~~~~~~l 91 (338)
-...+|+..+.+. =+..+ +|..++.++|-..+.++.. ..+... .=+|+|..|...... +
T Consensus 37 L~gk~v~llF~epStRTR~---SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~---~ 110 (306)
T PLN02527 37 LKGYLMATLFYEPSTRTRL---SFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGA---A 110 (306)
T ss_pred CCCCEEEEEEcCCCchhHH---HHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhH---H
Confidence 4466788777652 22222 3788999999999999874 112111 138999999876533 3
Q ss_pred HHHHHhCCCceeeChHHH-----HHHhccHHHHHH
Q 019600 92 EEYRQTHPEVTVLDPPYA-----IQHLHNRQSMLQ 121 (338)
Q Consensus 92 ~~~~~~~p~v~ViDp~~a-----i~~l~dR~~~~~ 121 (338)
+++. ++-.+||||-... .+.|.|=+.+.+
T Consensus 111 ~~~a-~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e 144 (306)
T PLN02527 111 RRAA-ATAEIPVINAGDGPGQHPTQALLDVYTIQR 144 (306)
T ss_pred HHHH-HhCCCCEEECCCCCCCChHHHHHHHHHHHH
Confidence 3333 4457999997542 344555344333
No 147
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=24.24 E-value=1.3e+02 Score=29.22 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=47.5
Q ss_pred eEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC-------------CccEEEEccCchhHHHHHHHH
Q 019600 29 LVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG-------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 29 ~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg-------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
..+|+-++-| +=+...+ |..+++++|.+++-++....-...| ..|+|+.|-..+-..+.+.+|
T Consensus 46 gk~v~~lFFEpSTRTr~S---FE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~ 122 (316)
T COG0540 46 GKVVANLFFEPSTRTRLS---FETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEF 122 (316)
T ss_pred CcEEEEEEecCCCchhhh---HHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHh
Confidence 3467776666 4333333 7779999999998888876555444 389999888775555555555
Q ss_pred HHhCCCc-eeeC
Q 019600 95 RQTHPEV-TVLD 105 (338)
Q Consensus 95 ~~~~p~v-~ViD 105 (338)
. ++ +|||
T Consensus 123 ~----~~~pvIN 130 (316)
T COG0540 123 S----GVNPVIN 130 (316)
T ss_pred c----CCCceEE
Confidence 5 44 6888
No 148
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=24.19 E-value=2.1e+02 Score=28.76 Aligned_cols=58 Identities=16% Similarity=0.085 Sum_probs=34.7
Q ss_pred EEEeeCCCCCCCcceeeEEEeChhhHhccC----------------CCeEEEecccCC----C--cEEEEEEECCEEEEE
Q 019600 163 LVAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHG----G--VLFKVYIVGEAIKVV 220 (338)
Q Consensus 163 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~vvQeFI~h~----g--~~~KV~VIGd~v~~~ 220 (338)
+|+|-.. |+ .+-|+..|.+.+++..++ ..+++||=|.+- + -.-=||+||.+|++.
T Consensus 263 V~VKAD~--GT-YGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvgg 339 (404)
T PF08886_consen 263 VFVKADA--GT-YGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVVGG 339 (404)
T ss_dssp EEEEEE---GG-G-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 5678544 55 677778888998887651 248999988763 1 123589999998876
Q ss_pred -EEe
Q 019600 221 -RRF 223 (338)
Q Consensus 221 -~R~ 223 (338)
.|-
T Consensus 340 fyRv 343 (404)
T PF08886_consen 340 FYRV 343 (404)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 444
No 149
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=23.80 E-value=1.5e+02 Score=23.86 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=28.5
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCc-hhHHHHHHHHHHhCC
Q 019600 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG-KEWRQILEEYRQTHP 99 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~-~~~~~~l~~~~~~~p 99 (338)
+.|+++.+.+||++..- + .++|.|++.|+.... ....+.+++|... |
T Consensus 14 qaF~DYl~sqgI~~~i~-~----~~~~~~~lwl~de~~~~~a~~el~~Fl~n-P 61 (101)
T PF12122_consen 14 QAFIDYLASQGIELQIE-P----EGQGQFALWLHDEEHLEQAEQELEEFLQN-P 61 (101)
T ss_dssp HHHHHHHHHTT--EEEE------SSSE--EEEES-GGGHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHCCCeEEEE-E----CCCCceEEEEeCHHHHHHHHHHHHHHHHC-C
Confidence 35888999999888443 2 456679999985444 2456788888854 5
No 150
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=22.04 E-value=1.8e+02 Score=28.10 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=48.9
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCC---CCc--------CCCccEEEEccCchhHHHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRP---LSD--------QGPFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~---l~~--------qg~~DvilhK~~~~~~~~~l~~~ 94 (338)
-...+|+..+.+ +=+..+ +|..++.++|-..+.+|.... ++. ..-+|+|+.|....... +.+
T Consensus 41 L~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~~~~~~~~~~dt~~vls~~~D~iv~R~~~~~~~---~~~ 114 (311)
T PRK14804 41 MSGRSLAMLFQKTSTRTRV---SFEVAMTEMGGHGIYLDWMASNFQLSDIDLEARYLSRNVSVIMARLKKHEDL---LVM 114 (311)
T ss_pred CCCCEEEEEEcCCchhHHH---HHHHHHHHcCCeEEEeCCCccccccccHHHHHHHHHhcCCEEEEeCCChHHH---HHH
Confidence 456678877765 223222 277899999999999988431 111 12489999998775433 332
Q ss_pred HHhCCCceeeChHHH
Q 019600 95 RQTHPEVTVLDPPYA 109 (338)
Q Consensus 95 ~~~~p~v~ViDp~~a 109 (338)
+++..+||||=...
T Consensus 115 -a~~~~vPVINag~~ 128 (311)
T PRK14804 115 -KNGSQVPVINGCDN 128 (311)
T ss_pred -HHHCCCCEEECCCC
Confidence 34568999997533
No 151
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=21.83 E-value=3.9e+02 Score=24.83 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHhhhhhccCCCc--ccCCCceEEEEEEecccccccc--cchHHHhhhhhcceEEEEeeCC
Q 019600 6 EEIEEQTREEELLSFPQ--TQQQSKLVVVGYALTSKKTKSF--LQPKLEGLARNKGILFVAIDQN 66 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~~~~VGy~l~~kK~~~~--~~~~l~~~~~~~gi~~~~id~~ 66 (338)
+.|.+-++++.--.... ...+.+..+||..++.-.-..| ....+.++|+++|+.+...+..
T Consensus 35 ~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~ 99 (327)
T TIGR02417 35 ERVMAVVREQGYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSD 99 (327)
T ss_pred HHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 33444455554432222 1234456899999875221111 1234666888899998776554
No 152
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=21.58 E-value=3e+02 Score=25.37 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=22.1
Q ss_pred EEEEecccc----cccccchHHHhhhhhcceEEEEeeCC
Q 019600 32 VGYALTSKK----TKSFLQPKLEGLARNKGILFVAIDQN 66 (338)
Q Consensus 32 VGy~l~~kK----~~~~~~~~l~~~~~~~gi~~~~id~~ 66 (338)
||+.++-.. +....+..+.+++++.|+++..++..
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~ 40 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV 40 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 566665333 22233445777878899998888765
No 153
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=21.55 E-value=4.3e+02 Score=21.85 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=19.7
Q ss_pred EEEEEecccccc------cccchH--HHhhhhhcceEEEEe
Q 019600 31 VVGYALTSKKTK------SFLQPK--LEGLARNKGILFVAI 63 (338)
Q Consensus 31 ~VGy~l~~kK~~------~~~~~~--l~~~~~~~gi~~~~i 63 (338)
++||+=-..+.+ ++..|. +.++|+++|++++.+
T Consensus 1 ~~~Y~RvSt~~q~~~~~~sle~Q~~~l~~~a~~~g~~i~~~ 41 (140)
T cd03770 1 TALYCRLSRDDDLDGESNSIENQKAILEEYAKENGLENIRH 41 (140)
T ss_pred CEEEEEECcccccccccCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 367765443322 444443 566889999887553
Done!