Query 019600
Match_columns 338
No_of_seqs 188 out of 478
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 1.4E-62 4.9E-67 476.7 32.5 310 25-338 14-340 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 4.4E-38 1.5E-42 299.0 29.3 295 24-333 6-322 (324)
3 3t7a_A Inositol pyrophosphate 100.0 1.6E-32 5.3E-37 258.3 20.2 271 26-332 4-313 (330)
4 1i7n_A Synapsin II; synapse, p 100.0 2.7E-30 9.1E-35 246.5 21.1 242 51-333 33-307 (309)
5 2p0a_A Synapsin-3, synapsin II 100.0 3.1E-30 1.1E-34 249.0 20.7 242 52-334 50-325 (344)
6 1pk8_A RAT synapsin I; ATP bin 100.0 7.7E-29 2.6E-33 243.8 20.6 242 51-333 145-419 (422)
7 3r5x_A D-alanine--D-alanine li 99.9 3.5E-24 1.2E-28 201.6 20.7 236 46-315 24-274 (307)
8 4eg0_A D-alanine--D-alanine li 99.9 7.6E-24 2.6E-28 201.1 21.7 272 30-331 14-313 (317)
9 1uc8_A LYSX, lysine biosynthes 99.9 4E-24 1.4E-28 197.3 18.8 232 44-315 11-260 (280)
10 3se7_A VANA; alpha-beta struct 99.9 3.3E-23 1.1E-27 199.5 20.8 235 48-317 26-318 (346)
11 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 2E-22 6.9E-27 188.6 24.1 235 47-314 24-280 (306)
12 2i87_A D-alanine-D-alanine lig 99.9 1.2E-21 4.2E-26 189.6 20.1 236 47-315 25-317 (364)
13 1ehi_A LMDDL2, D-alanine:D-lac 99.9 4.2E-21 1.4E-25 187.1 23.3 241 47-314 25-326 (377)
14 4fu0_A D-alanine--D-alanine li 99.9 8.7E-22 3E-26 190.6 17.3 214 74-315 97-323 (357)
15 3k3p_A D-alanine--D-alanine li 99.9 4E-21 1.4E-25 188.2 21.2 258 29-315 37-347 (383)
16 3e5n_A D-alanine-D-alanine lig 99.9 6.5E-21 2.2E-25 186.8 22.0 262 25-315 18-345 (386)
17 3tqt_A D-alanine--D-alanine li 99.9 6.7E-21 2.3E-25 185.9 21.5 216 74-317 98-329 (372)
18 2fb9_A D-alanine:D-alanine lig 99.9 1.2E-20 4.3E-25 179.9 22.6 206 73-315 75-296 (322)
19 3ln6_A Glutathione biosynthesi 99.9 3.8E-21 1.3E-25 202.5 19.7 230 44-314 428-727 (750)
20 3i12_A D-alanine-D-alanine lig 99.9 1.4E-20 4.7E-25 182.7 21.7 210 74-315 98-326 (364)
21 1e4e_A Vancomycin/teicoplanin 99.9 9E-21 3.1E-25 182.0 19.8 233 47-314 25-315 (343)
22 2pvp_A D-alanine-D-alanine lig 99.9 2.7E-20 9.3E-25 181.2 20.6 222 74-331 107-346 (367)
23 3lwb_A D-alanine--D-alanine li 99.8 5.2E-20 1.8E-24 179.5 20.3 214 74-315 109-341 (373)
24 3ln7_A Glutathione biosynthesi 99.8 3.4E-20 1.2E-24 195.2 19.8 233 44-314 433-733 (757)
25 1gsa_A Glutathione synthetase; 99.8 6.2E-19 2.1E-23 164.9 15.4 223 44-314 19-293 (316)
26 3q2o_A Phosphoribosylaminoimid 99.8 6.5E-17 2.2E-21 157.6 21.2 239 30-313 15-283 (389)
27 3ax6_A Phosphoribosylaminoimid 99.7 1.3E-16 4.4E-21 154.6 22.8 227 46-313 13-266 (380)
28 3vot_A L-amino acid ligase, BL 99.7 5.3E-16 1.8E-20 152.6 25.2 230 47-316 18-298 (425)
29 3orq_A N5-carboxyaminoimidazol 99.7 4.7E-16 1.6E-20 151.3 23.6 236 29-312 12-278 (377)
30 4e4t_A Phosphoribosylaminoimid 99.7 1.6E-16 5.5E-21 157.0 19.0 240 28-313 34-308 (419)
31 4dim_A Phosphoribosylglycinami 99.7 2E-16 6.8E-21 154.2 19.2 233 46-317 19-288 (403)
32 3aw8_A PURK, phosphoribosylami 99.7 2.9E-16 9.9E-21 151.6 20.1 227 46-313 11-267 (369)
33 3k5i_A Phosphoribosyl-aminoimi 99.7 9.8E-17 3.4E-21 157.6 16.9 244 30-314 25-297 (403)
34 2dwc_A PH0318, 433AA long hypo 99.7 3.4E-16 1.2E-20 154.4 17.5 231 45-314 30-301 (433)
35 1kjq_A GART 2, phosphoribosylg 99.7 4.3E-16 1.5E-20 151.1 17.7 229 45-314 22-288 (391)
36 4ffl_A PYLC; amino acid, biosy 99.7 1.3E-15 4.3E-20 146.8 20.9 207 46-311 13-247 (363)
37 3eth_A Phosphoribosylaminoimid 99.7 1.7E-15 5.7E-20 146.9 21.4 225 45-313 12-247 (355)
38 2z04_A Phosphoribosylaminoimid 99.7 1.9E-16 6.6E-21 152.4 12.3 222 45-314 12-260 (365)
39 3df7_A Putative ATP-grAsp supe 99.7 1.4E-15 4.9E-20 144.1 16.4 181 73-312 68-252 (305)
40 2r85_A PURP protein PF1517; AT 99.6 6E-15 2.1E-19 139.3 17.9 226 45-311 12-290 (334)
41 3ouz_A Biotin carboxylase; str 99.6 1.4E-14 4.9E-19 143.4 18.8 176 99-312 102-300 (446)
42 3lp8_A Phosphoribosylamine-gly 99.6 2.9E-14 9.9E-19 141.8 19.0 220 74-332 83-336 (442)
43 1a9x_A Carbamoyl phosphate syn 99.6 2.1E-14 7.3E-19 156.8 18.9 227 44-310 580-847 (1073)
44 1a9x_A Carbamoyl phosphate syn 99.6 4.4E-14 1.5E-18 154.3 21.1 228 45-310 29-305 (1073)
45 1ulz_A Pyruvate carboxylase N- 99.6 4.1E-14 1.4E-18 140.1 18.7 177 99-312 97-295 (451)
46 2pn1_A Carbamoylphosphate synt 99.6 3.6E-14 1.2E-18 134.3 17.5 169 99-312 97-276 (331)
47 2w70_A Biotin carboxylase; lig 99.6 5.5E-14 1.9E-18 139.1 19.3 176 99-312 98-296 (449)
48 3mjf_A Phosphoribosylamine--gl 99.6 2.7E-14 9.3E-19 141.5 17.0 236 46-332 56-321 (431)
49 2vpq_A Acetyl-COA carboxylase; 99.6 6.3E-14 2.1E-18 138.8 19.4 228 46-312 13-296 (451)
50 2dzd_A Pyruvate carboxylase; b 99.6 5E-14 1.7E-18 140.0 18.7 226 47-312 19-300 (461)
51 2ip4_A PURD, phosphoribosylami 99.6 5.4E-14 1.8E-18 137.9 18.5 180 100-312 85-285 (417)
52 2yrx_A Phosphoribosylglycinami 99.6 6.3E-14 2.2E-18 139.1 19.0 224 52-313 40-313 (451)
53 3vmm_A Alanine-anticapsin liga 99.6 1.4E-13 4.8E-18 138.1 20.3 172 99-310 124-332 (474)
54 2yw2_A Phosphoribosylamine--gl 99.6 5.3E-14 1.8E-18 138.2 16.3 182 99-313 85-292 (424)
55 2xcl_A Phosphoribosylamine--gl 99.5 4.3E-14 1.5E-18 138.7 13.6 182 99-313 85-292 (422)
56 1vkz_A Phosphoribosylamine--gl 99.5 1.4E-13 4.7E-18 135.2 17.2 180 102-314 93-295 (412)
57 3jrx_A Acetyl-COA carboxylase 99.5 1.7E-13 6E-18 140.7 15.5 215 45-312 127-384 (587)
58 3glk_A Acetyl-COA carboxylase 99.5 3.5E-13 1.2E-17 137.4 17.1 215 45-312 111-368 (540)
59 2qk4_A Trifunctional purine bi 99.5 2.6E-13 8.8E-18 134.6 15.2 182 99-313 111-319 (452)
60 3u9t_A MCC alpha, methylcroton 99.5 1.4E-13 4.7E-18 143.7 11.9 228 45-311 39-321 (675)
61 3hbl_A Pyruvate carboxylase; T 99.4 1.2E-12 3.9E-17 143.7 17.5 226 46-312 16-298 (1150)
62 2qf7_A Pyruvate carboxylase pr 99.4 1.2E-12 4.2E-17 143.7 15.7 178 99-312 117-316 (1165)
63 1w96_A ACC, acetyl-coenzyme A 99.4 1.4E-12 4.8E-17 133.1 14.4 178 101-312 158-375 (554)
64 3va7_A KLLA0E08119P; carboxyla 99.4 9.8E-13 3.4E-17 144.9 13.2 228 45-311 42-324 (1236)
65 3n6r_A Propionyl-COA carboxyla 99.4 1.5E-12 5.1E-17 136.0 10.9 176 99-312 98-296 (681)
66 2pbz_A Hypothetical protein; N 99.1 2.1E-09 7.2E-14 102.7 14.8 218 46-310 13-271 (320)
67 2r7k_A 5-formaminoimidazole-4- 99.0 1.5E-08 5.1E-13 98.3 17.1 254 3-310 2-316 (361)
68 2cqy_A Propionyl-COA carboxyla 98.9 2.4E-11 8.2E-16 96.3 -5.9 91 110-214 3-108 (108)
69 3tig_A TTL protein; ATP-grAsp, 98.4 2.2E-06 7.5E-11 83.4 12.7 150 49-213 20-209 (380)
70 1wr2_A Hypothetical protein PH 98.3 3.3E-07 1.1E-11 83.2 3.9 93 113-216 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.5 0.00012 4.2E-09 71.6 6.5 89 117-216 6-108 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.4 0.00024 8.1E-09 69.3 7.7 92 115-217 4-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.2 0.0006 2.1E-08 66.6 7.9 91 115-216 4-123 (395)
74 2io8_A Bifunctional glutathion 97.2 0.0026 9.1E-08 65.5 12.4 173 31-224 381-600 (619)
75 2vob_A Trypanothione synthetas 93.2 0.74 2.5E-05 47.6 12.4 157 47-224 413-615 (652)
76 3n6x_A Putative glutathionylsp 93.0 0.052 1.8E-06 54.0 3.5 130 73-219 268-441 (474)
77 3mwd_A ATP-citrate synthase; A 86.5 3.1 0.00011 40.6 9.8 96 119-216 11-127 (425)
78 3pff_A ATP-citrate synthase; p 69.6 13 0.00044 39.4 8.6 96 119-216 11-127 (829)
79 1duv_G Octase-1, ornithine tra 49.6 28 0.00095 32.8 6.2 73 28-107 43-128 (333)
80 1vlv_A Otcase, ornithine carba 48.1 34 0.0012 32.1 6.6 73 28-107 57-142 (325)
81 3tpf_A Otcase, ornithine carba 46.9 28 0.00095 32.4 5.7 75 27-108 34-121 (307)
82 4a8t_A Putrescine carbamoyltra 46.4 28 0.00095 32.9 5.7 73 28-107 62-147 (339)
83 1dxh_A Ornithine carbamoyltran 45.8 27 0.00093 32.9 5.5 73 28-107 44-129 (335)
84 2w37_A Ornithine carbamoyltran 45.4 30 0.001 32.9 5.8 73 28-107 66-151 (359)
85 3gd5_A Otcase, ornithine carba 44.1 29 0.00098 32.5 5.4 73 28-107 47-132 (323)
86 2ef0_A Ornithine carbamoyltran 42.8 30 0.001 32.1 5.2 74 27-107 43-129 (301)
87 1oth_A Protein (ornithine tran 42.5 34 0.0012 32.0 5.6 73 28-107 45-130 (321)
88 4a8p_A Putrescine carbamoyltra 42.1 31 0.0011 32.7 5.4 74 27-107 39-125 (355)
89 4ep1_A Otcase, ornithine carba 41.1 33 0.0011 32.4 5.3 73 28-107 69-154 (340)
90 3nbm_A PTS system, lactose-spe 40.6 83 0.0028 24.3 6.8 82 42-123 19-103 (108)
91 1pvv_A Otcase, ornithine carba 40.2 33 0.0011 31.9 5.1 73 28-107 45-130 (315)
92 4amu_A Ornithine carbamoyltran 38.0 24 0.00083 33.6 3.9 73 28-107 70-155 (365)
93 3brq_A HTH-type transcriptiona 37.3 46 0.0016 28.8 5.5 42 25-66 15-60 (296)
94 3r7f_A Aspartate carbamoyltran 36.7 40 0.0014 31.3 5.0 109 5-123 12-142 (304)
95 4h31_A Otcase, ornithine carba 36.5 45 0.0016 31.5 5.5 71 28-105 69-152 (358)
96 2i6u_A Otcase, ornithine carba 36.4 32 0.0011 31.9 4.4 73 28-107 38-123 (307)
97 4ekn_B Aspartate carbamoyltran 36.1 48 0.0017 30.7 5.5 90 27-123 38-146 (306)
98 3huu_A Transcription regulator 35.3 36 0.0012 30.0 4.5 57 6-67 4-67 (305)
99 2l2q_A PTS system, cellobiose- 34.7 1.2E+02 0.0041 23.1 6.9 81 42-124 17-100 (109)
100 4f2g_A Otcase 1, ornithine car 33.9 41 0.0014 31.2 4.7 73 28-107 44-129 (309)
101 3sds_A Ornithine carbamoyltran 33.2 55 0.0019 31.0 5.5 74 27-107 64-150 (353)
102 1pg5_A Aspartate carbamoyltran 32.3 47 0.0016 30.7 4.7 89 28-123 37-144 (299)
103 1js1_X Transcarbamylase; alpha 31.4 42 0.0014 31.4 4.3 77 28-107 35-142 (324)
104 1jx6_A LUXP protein; protein-l 31.2 1.6E+02 0.0055 26.1 8.3 59 5-63 19-80 (342)
105 1e2b_A Enzyme IIB-cellobiose; 30.8 26 0.00088 27.1 2.3 74 42-120 16-93 (106)
106 3l49_A ABC sugar (ribose) tran 30.3 88 0.003 27.0 6.1 64 28-107 4-70 (291)
107 3jy6_A Transcriptional regulat 29.7 92 0.0032 26.7 6.1 42 26-67 4-47 (276)
108 3guv_A Site-specific recombina 29.6 1.6E+02 0.0056 23.7 7.4 38 28-65 4-49 (167)
109 3k1t_A Glutamate--cysteine lig 27.5 1.5E+02 0.0051 28.7 7.3 58 163-223 280-360 (432)
110 1ml4_A Aspartate transcarbamoy 27.2 44 0.0015 31.0 3.6 87 28-121 43-148 (308)
111 3gyb_A Transcriptional regulat 25.3 1.4E+02 0.0048 25.5 6.5 52 27-79 3-65 (280)
112 3grf_A Ornithine carbamoyltran 25.0 60 0.0021 30.4 4.1 90 27-123 42-149 (328)
113 3d6n_B Aspartate carbamoyltran 24.7 42 0.0014 30.9 2.9 71 28-105 34-118 (291)
114 3csu_A Protein (aspartate carb 24.7 56 0.0019 30.3 3.8 90 28-123 40-149 (310)
115 3l6u_A ABC-type sugar transpor 24.7 94 0.0032 26.8 5.3 42 26-67 5-48 (293)
116 3n6x_A Putative glutathionylsp 24.0 52 0.0018 32.4 3.6 24 282-307 141-164 (474)
117 2xko_C PIPX, global nitrogen r 23.0 20 0.00069 27.1 0.3 19 198-216 4-24 (89)
118 3kjx_A Transcriptional regulat 22.3 3.1E+02 0.01 24.3 8.5 63 5-67 42-108 (344)
119 3cs3_A Sugar-binding transcrip 21.1 3.3E+02 0.011 23.1 8.1 79 26-106 5-88 (277)
120 2iks_A DNA-binding transcripti 20.7 1.8E+02 0.0063 25.0 6.4 82 6-107 2-85 (293)
121 3s99_A Basic membrane lipoprot 20.1 1.6E+02 0.0055 27.4 6.1 77 25-103 22-113 (356)
122 2x7x_A Sensor protein; transfe 20.1 2E+02 0.0068 25.4 6.6 39 26-66 3-45 (325)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=1.4e-62 Score=476.70 Aligned_cols=310 Identities=33% Similarity=0.534 Sum_probs=262.4
Q ss_pred CCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCc------------hhHHHHHH
Q 019600 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------------KEWRQILE 92 (338)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~------------~~~~~~l~ 92 (338)
-++++++|||||++||.++|++++|+++++++|++++.||+++++..|++||+||||+++ ..+.+.++
T Consensus 14 ~~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~ 93 (346)
T 2q7d_A 14 TFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQ 93 (346)
T ss_dssp GGGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999987 25788899
Q ss_pred HHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecC-CCChhHHHHhcCCCCcEEEeeCCCC
Q 019600 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVAD 171 (338)
Q Consensus 93 ~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~-~~~~~~~l~~~~l~fP~VvKp~~a~ 171 (338)
+|..+|||++||||+.++++|.||+.|+++|+++.+....++|++|+|+++.+. .+++.+.+...+++||+|+||+.|+
T Consensus 94 ~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~ 173 (346)
T 2q7d_A 94 EYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAH 173 (346)
T ss_dssp HHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCS
T ss_pred HHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 999999999999999999999999999999998644344569999999999643 2455555556789999999999999
Q ss_pred CCCcceeeEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecC--ccccc
Q 019600 172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPR--VSCAA 249 (338)
Q Consensus 172 Gs~~sh~m~iv~~~~~L~~l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~--~s~~~ 249 (338)
||+ +|+|+++++.++|..++.|+|+||||+|+|++|||||||+++++++|+|+|+|..+. +..++|+|.. +++++
T Consensus 174 Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g 250 (346)
T 2q7d_A 174 GTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPE 250 (346)
T ss_dssp STT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTT
T ss_pred cce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCC
Confidence 996 999999999999999999999999999999999999999999999999999987653 2356777654 66666
Q ss_pred ccCCCCCCCc--cccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccchHHHHHHHHH
Q 019600 250 ASADDADLDP--CVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLS 327 (338)
Q Consensus 250 ~~~~~~~~~~--~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~ 327 (338)
..+.....++ ...++++.++++++|.+++++||++++|||+|++.++| +|||+|||+||||+|++++...+.++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~~g~~~~~~~i~~~l~~ 329 (346)
T 2q7d_A 251 SSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGYEGVSEFFTDLLNHIAT 329 (346)
T ss_dssp CCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCCTTCTTHHHHHHHHHHH
T ss_pred ccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCccccccchHHHHHHHHHHH
Confidence 4432222111 12356667889999999999999999999999986455 69999999999999999999999999999
Q ss_pred HHHhhccccCC
Q 019600 328 LTQSRYKKKSC 338 (338)
Q Consensus 328 ~i~~~~~~~~~ 338 (338)
++++++...+|
T Consensus 330 ~~~~~~~~~~~ 340 (346)
T 2q7d_A 330 VLQGQSTAMAA 340 (346)
T ss_dssp HHHHHHTTCBC
T ss_pred HhhccCCCccc
Confidence 99988754444
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=4.4e-38 Score=298.99 Aligned_cols=295 Identities=19% Similarity=0.338 Sum_probs=223.8
Q ss_pred cCCCceEEEEEEecccccccccchHHHhhhhhcceEE--EEeeCCCCCCcCC-CccEEEEccCch--hHHHHHHHHHHhC
Q 019600 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILF--VAIDQNRPLSDQG-PFDIVLHKLTGK--EWRQILEEYRQTH 98 (338)
Q Consensus 24 ~~~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~--~~id~~~~l~~qg-~~DvilhK~~~~--~~~~~l~~~~~~~ 98 (338)
|...+..+||++..+++. ++ .+.++++++|+++ +.+|++.++..++ ++|+++++.+++ .+.+.++.+...+
T Consensus 6 ~~~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~ 81 (324)
T 1z2n_X 6 MTTKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDH 81 (324)
T ss_dssp ----CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHC
T ss_pred cccCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhC
Confidence 444556799999988776 45 7888999999999 9999977777666 899999999774 4567888888878
Q ss_pred CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCccee
Q 019600 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 99 p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
+|++++|+++++..+.||..+.+.|+++ ||++|++..+++ .+++.+.+...+++||+|+||..++|+.++|+
T Consensus 82 ~g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~g 153 (324)
T 1z2n_X 82 PKVLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQ 153 (324)
T ss_dssp TTSEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGE
T ss_pred CCCeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCcccee
Confidence 8999999999999999999999999975 899999999852 22333333344577999999999777767799
Q ss_pred eEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeec----------Ccccc
Q 019600 179 LSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP----------RVSCA 248 (338)
Q Consensus 179 m~iv~~~~~L~~l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~----------~~s~~ 248 (338)
+.++.+.++|..++.++++||||++.|++++|+|+|+++..+.|++.+++..++..+ ..+|+++ .+++.
T Consensus 154 v~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~k~ 232 (324)
T 1z2n_X 154 MKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEGVIDKQ 232 (324)
T ss_dssp EEEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTTSSCHH
T ss_pred eEEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccc-eeeccccchhhhcccccccccc
Confidence 999999999999999999999999889999999999999988888887765432111 1123322 11110
Q ss_pred c----ccCCC-CCC--CccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcccchHHH
Q 019600 249 A----ASADD-ADL--DPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIF 321 (338)
Q Consensus 249 ~----~~~~~-~~~--~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l 321 (338)
. +.... ... .+......+.+.++++|.++.++||+.++|||++++..+| ++||+|||.+|||++++++. .+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g-~~~vlEvN~~Pg~~~~~~~~-~i 310 (324)
T 1z2n_X 233 DIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQG-NPLVVDVNVFPSYGGKVDFD-WF 310 (324)
T ss_dssp HHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECGGGCS-SCEEEEEEESCCTTSCBCHH-HH
T ss_pred ccccccccchhhccccCCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCC-CEEEEEEcCCCCcCCCCCHH-HH
Confidence 0 00000 000 0111111222578999999999999999999999974445 68999999999999999998 88
Q ss_pred HHHHHHHHHhhc
Q 019600 322 TDFLLSLTQSRY 333 (338)
Q Consensus 322 ~~~l~~~i~~~~ 333 (338)
.+++.+++.++.
T Consensus 311 ~~~l~~~~~~~~ 322 (324)
T 1z2n_X 311 VEKVALCYTEVA 322 (324)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhh
Confidence 899988887654
No 3
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=1.6e-32 Score=258.29 Aligned_cols=271 Identities=18% Similarity=0.207 Sum_probs=197.8
Q ss_pred CCceEEEEEEecccccccccchHHHhhhhhcc-eEEEEee----CCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCC
Q 019600 26 QSKLVVVGYALTSKKTKSFLQPKLEGLARNKG-ILFVAID----QNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPE 100 (338)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~g-i~~~~id----~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~ 100 (338)
+.+..+||.|..+||.+|-.++.+++-..+.| ++++.-. ++.+.+.+.-+|++|...++.--.....+|.+. -+
T Consensus 4 ~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~l-r~ 82 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKL-RN 82 (330)
T ss_dssp --CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHH-HC
T ss_pred CCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHH-hC
Confidence 45679999999999999999988776555544 5555432 355778888999999999885445556666653 25
Q ss_pred ceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-----------ChhHHHHhcCCCCcEEEeeCC
Q 019600 101 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-----------SIPDVVLKAGLTLPLVAKPLV 169 (338)
Q Consensus 101 v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~-----------~~~~~l~~~~l~fP~VvKp~~ 169 (338)
.++||++.++..++||..++++|++. +||+|+++++.++.. +..+ ..-..+++|+|+||+.
T Consensus 83 p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~-~~g~~l~kPfVeKPv~ 154 (330)
T 3t7a_A 83 PFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVE-VNGEVFQKPFVEKPVS 154 (330)
T ss_dssp CEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEE-ETTEEEESSEEEEESB
T ss_pred CceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhh-hccccccCCeeEcccc
Confidence 69999999999999999999999975 899999999965431 1111 0123478999999999
Q ss_pred CCCCCcceeeEEEeChhh---Hh-------------------ccCCCeEEEecccCCCcEEEEEEECCEEEEE-EEecCC
Q 019600 170 ADGSAKSHELSLAYDQYS---LK-------------------KLEPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLP 226 (338)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~---L~-------------------~l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~-~R~Slp 226 (338)
| | -|+++|.+.... .. .-+..+++||||+++|+|+||||||+++.++ .|+| |
T Consensus 155 G--s--dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~s-p 229 (330)
T 3t7a_A 155 A--E--DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS-P 229 (330)
T ss_dssp T--T--CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEEC-T
T ss_pred c--c--cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeC-C
Confidence 5 2 455555555421 11 1256899999999999999999999998766 6665 3
Q ss_pred CCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEecc
Q 019600 227 DVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDIN 306 (338)
Q Consensus 227 ~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN 306 (338)
. ..++|++| .| .+..+.+.. + .++.+++|.++++++|++++|||+++++ + ++||+|||
T Consensus 230 ~-~~G~~r~N-----~~----gG~~~~~v~-------L--t~eek~iA~kaa~a~G~~v~GVDlLrs~--~-~~~V~EVN 287 (330)
T 3t7a_A 230 A-LDGKVERD-----SE----GKEVRYPVI-------L--NAREKLIAWKVCLAFKQTVCGFDLLRAN--G-QSYVCDVN 287 (330)
T ss_dssp T-SSCBCCBC-----TT----SCBCCEECC-------C--CHHHHHHHHHHHHHTTBSEEEEEEEEET--T-EEEEEEEE
T ss_pred C-CCCcEEEc-----CC----CCceeeeec-------C--CHHHHHHHHHHHHHhCCceEEEEEEEEC--C-ccEEEEeC
Confidence 2 12233332 12 111122222 2 2456999999999999999999999975 2 57899999
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhh
Q 019600 307 YFPGYGKMPEYEHIFTDFLLSLTQSR 332 (338)
Q Consensus 307 ~fPg~~gv~~~~~~l~~~l~~~i~~~ 332 (338)
.||-.++.++|+..++..|.+.+.+.
T Consensus 288 g~~fvk~~~~yyd~~a~il~~~~~~~ 313 (330)
T 3t7a_A 288 GFSFVKNSMKYYDDCAKILGNIVMRE 313 (330)
T ss_dssp ESCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCchhHHHHHHHHHHHHHHHH
Confidence 99999999999988888887776654
No 4
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97 E-value=2.7e-30 Score=246.46 Aligned_cols=242 Identities=14% Similarity=0.184 Sum_probs=177.5
Q ss_pred hhhhhcceEEEEeeCCCCCC-----cCC-------CccEEEEccCchh------HHHHHHHHHHhCCCceeeChHHHHHH
Q 019600 51 GLARNKGILFVAIDQNRPLS-----DQG-------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (338)
Q Consensus 51 ~~~~~~gi~~~~id~~~~l~-----~qg-------~~DvilhK~~~~~------~~~~l~~~~~~~p~v~ViDp~~ai~~ 112 (338)
+.++..++++..++...+.. ..| .+|++|.|..+.. ++..+..+.. .|++|+|++++|.+
T Consensus 33 e~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~~~~~~~~r~vl~~le~--~GvpviN~~~sI~~ 110 (309)
T 1i7n_A 33 EQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQY--AGLPSINSLESIYN 110 (309)
T ss_dssp EEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCCSSTTCCCHHHHHHHHH--TTCCEESCHHHHHH
T ss_pred HHHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEecccccccccchHHHHHHHHHH--CCccccCCHHHHHH
Confidence 46677778877776665322 122 5899999997632 3444444444 49999999999999
Q ss_pred hccH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhH
Q 019600 113 LHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (338)
Q Consensus 113 l~dR----~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 188 (338)
|.|| ..++++|+++++ .++|.|++.... +. .+. ...++||+|+||.. || ++.+|.++.+++++
T Consensus 111 ~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~~-~~---~~~--~~~~g~PvVvK~~~--Gs-~G~GV~lv~~~~~~ 177 (309)
T 1i7n_A 111 FCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYYP-NH---REM--LTLPTFPVVVKIGH--AH-SGMGKVKVENHYDF 177 (309)
T ss_dssp TSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GGG--SSCCCSSEEEEESS--CS-TTTTEEEECSHHHH
T ss_pred hCCccHHHHHHHHHHHhCCC----CCCCCCCEEeeC-Ch---hhh--hhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 678888887632 245854544442 21 221 23579999999988 55 89999999999887
Q ss_pred hcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccc
Q 019600 189 KKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 261 (338)
Q Consensus 189 ~~l-------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 261 (338)
.++ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|. + + +..
T Consensus 178 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~----g~wrtN~--------~--~-----~~~---- 233 (309)
T 1i7n_A 178 QDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSIS----GNWKTNT--------G--S-----AML---- 233 (309)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSC----TTTSCSC--------C--C-----SSE----
T ss_pred HHHHHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCCeecC--------C--c-----cee----
Confidence 653 67889999999 79999999999999988999742 2344331 1 0 110
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEeccC--CCCCCCccc-chHHHHHHHHHHHHhhc
Q 019600 262 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGYGKMPE-YEHIFTDFLLSLTQSRY 333 (338)
Q Consensus 262 ~~~p~~~~~~~lA~~l~~~L-Gl~l~GvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~-~~~~l~~~l~~~i~~~~ 333 (338)
...+.+++.+++|.++++++ |++++|||++.+. +| +++|+|||. +||++|.+. ....+++++.+.++++.
T Consensus 234 e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~-~g-~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~ 307 (309)
T 1i7n_A 234 EQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGK-DG-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 307 (309)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred eecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHc
Confidence 11233466799999999999 8999999999886 35 589999999 999998764 34678888888887765
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=249.00 Aligned_cols=242 Identities=12% Similarity=0.194 Sum_probs=176.1
Q ss_pred hhhhcceEEEEeeCCCCCCc-----CC--------CccEEEEccCchh------HHHHHHHHHHhCCCceeeChHHHHHH
Q 019600 52 LARNKGILFVAIDQNRPLSD-----QG--------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (338)
Q Consensus 52 ~~~~~gi~~~~id~~~~l~~-----qg--------~~DvilhK~~~~~------~~~~l~~~~~~~p~v~ViDp~~ai~~ 112 (338)
.++..++++..++...+..+ .| .+|++|.|..+.. ++..+..+.. .|++|||++++|.+
T Consensus 50 qa~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~~~~~~~~~yr~vl~~le~--~GvpviN~~~sI~~ 127 (344)
T 2p0a_A 50 QAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQY--GGLPAVNSLYSVYN 127 (344)
T ss_dssp EECGGGEEEEEETTSCEEEEEC----------CEECCSEEEECSCSEEGGGTEECHHHHHHHHH--TTCCEESCHHHHHH
T ss_pred hhhhcceEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccccccccchhHHHHHHHHHH--CCceecCCHHHHHh
Confidence 34445588888777664221 22 6899999997632 3444444444 49999999999999
Q ss_pred hccH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhH
Q 019600 113 LHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (338)
Q Consensus 113 l~dR----~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 188 (338)
|.|| ..++++|.++++ .++|.|++.... +..++ ...++||+|+||.. || ++.+|.++.+++++
T Consensus 128 ~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~~-~~~~~-----~~~~g~PvVvK~~~--Gs-~G~GV~lve~~~~~ 194 (344)
T 2p0a_A 128 FCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFFP-NHKPM-----VTAPHFPVVVKLGH--AH-AGMGKIKVENQLDF 194 (344)
T ss_dssp TTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SSTTC-----CCCSSSSEEEEESS--CC-TTTTEEEECSHHHH
T ss_pred hCCchHHHHHHHHHHHHCCC----CCCCCCCEEecC-chhhh-----hhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 678888887632 245854544443 22221 23579999999988 56 89999999999888
Q ss_pred hcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccc
Q 019600 189 KKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 261 (338)
Q Consensus 189 ~~l-------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 261 (338)
.++ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|. . ++..
T Consensus 195 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~----g~wrtN~--------~--~~~~--------- 250 (344)
T 2p0a_A 195 QDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSIS----GNWKANT--------G--SAML--------- 250 (344)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTS--------S--SEEE---------
T ss_pred HHHHHHHhccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCC----CCCeecC--------C--ceEE---------
Confidence 752 66789999999 79999999999999988998742 2344331 1 0000
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEeccC--CCCCCCcccc-hHHHHHHHHHHHHhhcc
Q 019600 262 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGYGKMPEY-EHIFTDFLLSLTQSRYK 334 (338)
Q Consensus 262 ~~~p~~~~~~~lA~~l~~~L-Gl~l~GvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~~-~~~l~~~l~~~i~~~~~ 334 (338)
...+.+++.+++|.++++++ |++++|||++++. +| ++||+|||. .|||+|.+.. ...+.+++.+.+.++.+
T Consensus 251 e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~-~G-~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~~ 325 (344)
T 2p0a_A 251 EQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSK-DG-RDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPM 325 (344)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC-
T ss_pred EeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhcC
Confidence 11233466899999999999 8999999999886 35 589999999 9999987753 45788888888877653
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.96 E-value=7.7e-29 Score=243.78 Aligned_cols=242 Identities=12% Similarity=0.168 Sum_probs=176.3
Q ss_pred hhhhhcceEEEEeeCCCCCCc-----CC-------CccEEEEccCchh------HHHHHHHHHHhCCCceeeChHHHHHH
Q 019600 51 GLARNKGILFVAIDQNRPLSD-----QG-------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (338)
Q Consensus 51 ~~~~~~gi~~~~id~~~~l~~-----qg-------~~DvilhK~~~~~------~~~~l~~~~~~~p~v~ViDp~~ai~~ 112 (338)
+.++..+|++..++...++.. .| .+|++|.|..+.. ++..+..+... |++|||++++|.+
T Consensus 145 eqa~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~vlr~lE~~--GvpviNs~~sI~~ 222 (422)
T 1pk8_A 145 EQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYA--GIPSVNSLHSVYN 222 (422)
T ss_dssp EEECGGGEEEEEETTSCEEEEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHHHHHHHHHT--TCCEESCHHHHHH
T ss_pred HHHhhcCceEEEEcCCceeEEeehhhcCCccccccCCCEEEEeccccccccchhHHHHHHHHHHC--CccccCCHHHHHH
Confidence 355667788877666553221 23 5899999987632 34444444444 9999999999999
Q ss_pred hccH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhH
Q 019600 113 LHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (338)
Q Consensus 113 l~dR----~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 188 (338)
|.|| ..++++|+++++ .++|.|.+.... +. .+. ...++||+|+||+. || ++.+|.++.+++++
T Consensus 223 ~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~~-~~---~~~--i~~~g~PvVvKp~~--GS-~G~GV~lve~~~~l 289 (422)
T 1pk8_A 223 FCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFYP-NH---KEM--LSSTTYPVVVKMGH--AH-SGMGKVKVDNQHDF 289 (422)
T ss_dssp TSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GGC--CCCSSSSEEEEESS--CC-TTTTEEEECSHHHH
T ss_pred hCCccHHHHHHHHHHHhCCC----CCCCCCceEecC-ch---hhh--hhccCCCEEEEeCC--CC-ceeCeEEeCCHHHH
Confidence 9999 567888887632 245744444442 21 111 23579999999988 55 89999999999887
Q ss_pred hcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccc
Q 019600 189 KKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 261 (338)
Q Consensus 189 ~~l-------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 261 (338)
+.+ +..+++||||+ .|+|+||+|||+++++++|++.. ++|++|. . ++..
T Consensus 290 ~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~----g~WrtNv--------g--~g~~--------- 345 (422)
T 1pk8_A 290 QDIASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVS----GNWKTNT--------G--SAML--------- 345 (422)
T ss_dssp HHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTS--------S--CEEE---------
T ss_pred HHHHHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCceecc--------C--ceee---------
Confidence 753 67789999999 79999999999999988998742 2344431 1 0000
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEeccC--CCCCCCcccc-hHHHHHHHHHHHHhhc
Q 019600 262 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGYGKMPEY-EHIFTDFLLSLTQSRY 333 (338)
Q Consensus 262 ~~~p~~~~~~~lA~~l~~~L-Gl~l~GvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~~-~~~l~~~l~~~i~~~~ 333 (338)
..++.+++.+++|.++++++ |++++|||+|++. +| ++||+|||. .||++|.+.. ...+.+++.+.++++.
T Consensus 346 e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~-dG-~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~ 419 (422)
T 1pk8_A 346 EQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGK-DG-RDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQAL 419 (422)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC-
T ss_pred eeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhc
Confidence 11233466899999999999 8999999999886 35 589999999 9999987753 4678888888887765
No 7
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.92 E-value=3.5e-24 Score=201.65 Aligned_cols=236 Identities=14% Similarity=0.181 Sum_probs=164.2
Q ss_pred chHHHhhhhhcceEEEEeeCCCC---CCcCCCccEEEEccCchhHH-HHHHHHHHhCCCceeeCh-HHHHHHhccHHHHH
Q 019600 46 QPKLEGLARNKGILFVAIDQNRP---LSDQGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSML 120 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~---l~~qg~~DvilhK~~~~~~~-~~l~~~~~~~p~v~ViDp-~~ai~~l~dR~~~~ 120 (338)
-..+.++++++|++++.+|.+.. +.....+|+++....+.... ..++.+.+. .|+++++| ++++..++||..+.
T Consensus 24 ~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~ 102 (307)
T 3r5x_A 24 GNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LGIPYSGSNMLSSGICMDKNISK 102 (307)
T ss_dssp HHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HTCCBSSSCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHH
Confidence 44578889999999999999853 33345899999988663221 123333322 37888866 99999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------CC
Q 019600 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EP 193 (338)
Q Consensus 121 ~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~ 193 (338)
++|+++ +|++|++.++.+.. +.... ....++||+|+||..++ +|.++.++.+.++|.+. +.
T Consensus 103 ~~l~~~-------Gip~p~~~~~~~~~-~~~~~-~~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~ 170 (307)
T 3r5x_A 103 KILRYE-------GIETPDWIELTKME-DLNFD-ELDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDS 170 (307)
T ss_dssp HHHHHT-------TCCCCCEEEEESSS-CCCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCS
T ss_pred HHHHHC-------CCCCCCEEEEeChh-hhhHH-HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCC
Confidence 999975 89999999996432 22221 12347899999998854 47899999999887653 67
Q ss_pred CeEEEecccCCCcEEEEEEECCEEEEE-EEecCCCCCcccccCCCceeeecCcc-cccccCCCCCCCccccCCCChHHHH
Q 019600 194 PLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVS-CAAASADDADLDPCVAELPPRPLLE 271 (338)
Q Consensus 194 p~vvQeFI~h~g~~~KV~VIGd~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s-~~~~~~~~~~~~~~~~~~p~~~~~~ 271 (338)
++++||||+ |++|.|.|+|+++..+ .+... .++|++.... ..+....+..+++.. .+.++
T Consensus 171 ~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~p~~l~~~~-----~~~i~ 232 (307)
T 3r5x_A 171 EVVIEKYIK--GEEITCSIFDGKQLPIISIRHA-----------AEFFDYNAKYDDASTIEEVIELPAEL-----KERVN 232 (307)
T ss_dssp EEEEEECCC--SEEEEEEEETTEECCCEEEEEE-----------EEEETTEEEEEEEEEEEEECCCCHHH-----HHHHH
T ss_pred CEEEECCcC--CEEEEEEEECCEEeeEEEEEcC-----------CcccChhhcCCCCCCeEecCCCCHHH-----HHHHH
Confidence 999999996 8999999999976422 21110 1122222111 111111122222211 34679
Q ss_pred HHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCcc
Q 019600 272 RLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 272 ~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 315 (338)
++|.++.++||+. ++++|+++++ | ++||+|||..||+.+..
T Consensus 233 ~~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~s 274 (307)
T 3r5x_A 233 KASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQAS 274 (307)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCSTTS
T ss_pred HHHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCCccC
Confidence 9999999999998 8899999983 4 79999999999998653
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.92 E-value=7.6e-24 Score=201.15 Aligned_cols=272 Identities=13% Similarity=0.095 Sum_probs=175.8
Q ss_pred EEEEEEecc-cccccc---cchHHHhhhhhcceEEEEeeCCCCCCc---CCCccEEEEccCchhH-HHHHHHHHHhCCCc
Q 019600 30 VVVGYALTS-KKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKEW-RQILEEYRQTHPEV 101 (338)
Q Consensus 30 ~~VGy~l~~-kK~~~~---~~~~l~~~~~~~gi~~~~id~~~~l~~---qg~~DvilhK~~~~~~-~~~l~~~~~~~p~v 101 (338)
.+|+..+-- +..+.. +-..+.+++++.|++++.||.+..... ...+|+++..+.+... ...++...+. -|+
T Consensus 14 ~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~-~gi 92 (317)
T 4eg0_A 14 GKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDF-YGI 92 (317)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHH-HTC
T ss_pred ceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHH-cCC
Confidence 456665532 223333 334578889999999999997654222 3579999988765311 0133444332 378
Q ss_pred eee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHH--hcCCCCcEEEeeCCCCCCCccee
Q 019600 102 TVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL--KAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 102 ~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~--~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
+++ +++.++..++||..+.++|+++ +||+|++.++.+. ++..+... ...++||+|+||..++ +|.+
T Consensus 93 p~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~~~~~g~PvvvKP~~~~---~s~G 161 (317)
T 4eg0_A 93 RYTGSGVLGSALGLDKFRTKLVWQQT-------GVPTPPFETVMRG-DDYAARATDIVAKLGLPLFVKPASEG---SSVA 161 (317)
T ss_dssp EESSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETT-SCHHHHHHHHHHHHCSCEEEEECC--------C
T ss_pred CeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEECc-hhHHHHHHHHHHhcCCCEEEEeCCCC---CCCC
Confidence 888 6779999999999999999975 8999999999633 33333220 1457999999998854 4778
Q ss_pred eEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCccccccc
Q 019600 179 LSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 251 (338)
Q Consensus 179 m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~ 251 (338)
+.++.+.++|.+ .+.++++||||++ |++|.|.|+|+++..+.+... ..++|+|......+..
T Consensus 162 v~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~----------~~~~~~~~~k~~~g~~ 230 (317)
T 4eg0_A 162 VLKVKTADALPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVP----------AGEFYDYHAKYVANDT 230 (317)
T ss_dssp CEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC-------------------------C
T ss_pred EEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEee----------CCceechhhcccCCCe
Confidence 999999988764 2568999999975 999999999996432221111 1123444332211110
Q ss_pred --CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCcccchH-------HH
Q 019600 252 --ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEH-------IF 321 (338)
Q Consensus 252 --~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~-------~l 321 (338)
..+..+++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||..||+....-++. -+
T Consensus 231 ~~~~P~~l~~~~-----~~~l~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~ 303 (317)
T 4eg0_A 231 QYLIPCGLPAEQ-----ETELKRIARRAFDVLGCTDWGRADFMLDA-AG-NAYFLEVNTAPGMTDHSLPPKAARSIGIGY 303 (317)
T ss_dssp EEESSCSSCHHH-----HHHHHHHHHHHHHTTTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTSHHHHHHHHTTCCH
T ss_pred eEEcCCCCCHHH-----HHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCcccHHHHHHHHcCCCH
Confidence 0122222211 357899999999999996 8889999985 45 699999999999997655532 14
Q ss_pred HHHHHHHHHh
Q 019600 322 TDFLLSLTQS 331 (338)
Q Consensus 322 ~~~l~~~i~~ 331 (338)
.+.+.+++..
T Consensus 304 ~~l~~~li~~ 313 (317)
T 4eg0_A 304 SELVVKVLSL 313 (317)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 9
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.92 E-value=4e-24 Score=197.26 Aligned_cols=232 Identities=14% Similarity=0.175 Sum_probs=161.1
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCc-------CCCccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLSD-------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNR 116 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~~-------qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR 116 (338)
.....+.++++++|++++.+|.+..... ...+|+++++.........+.++.+. -|++++++++++..+.||
T Consensus 11 ~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK 89 (280)
T 1uc8_A 11 PDERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTA-LGIPVVNRPEVIEACGDK 89 (280)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHH-TTCCEESCHHHHHHHHBH
T ss_pred HHHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHH-CCCceeCCHHHHHHhCCH
Confidence 3445689999999999999998754321 24689566665432222344444443 478899999999999999
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-----
Q 019600 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----- 191 (338)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l----- 191 (338)
..+.+.|+++ +|++|++..+.+ .+++.+.+ ..++||+|+||..++ +|+++.++.+.++|.+.
T Consensus 90 ~~~~~~l~~~-------gi~~p~~~~~~~-~~~~~~~~--~~~~~p~vvKp~~g~---~~~gv~~v~~~~el~~~~~~~~ 156 (280)
T 1uc8_A 90 WATSVALAKA-------GLPQPKTALATD-REEALRLM--EAFGYPVVLKPVIGS---WGRLLAXXXXXXXXXXXXXXKE 156 (280)
T ss_dssp HHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--HHHCSSEEEECSBCC---BCSHHHHHHHHHC---------
T ss_pred HHHHHHHHHc-------CcCCCCeEeeCC-HHHHHHHH--HHhCCCEEEEECCCC---CcccceecccccccchhhhhHh
Confidence 9999999975 899999998852 22233322 246899999999854 46788888888776531
Q ss_pred ------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCC
Q 019600 192 ------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELP 265 (338)
Q Consensus 192 ------~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p 265 (338)
..++++||||+..+.+++++++|+++..+..+...+|..+ ++. .+ ...+. .+
T Consensus 157 ~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~~~~~~~----------~~~---g~-~~~p~-------~l- 214 (280)
T 1uc8_A 157 VLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITN----------TAR---GG-QAENC-------PL- 214 (280)
T ss_dssp ---CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC----------------------------CEEC-------CC-
T ss_pred hhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEecCCcccc----------ccC---Cc-cccCC-------CC-
Confidence 4689999999877899999999999875533321222211 111 11 00111 12
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEeccCCCCCCCcc
Q 019600 266 PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 266 ~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 315 (338)
.+.++++|.++.++||+.++|+|++++.+ .++++|||..||+..+.
T Consensus 215 -~~~~~~~~~~~~~~lg~g~~~vD~~~~~~---g~~~iEiN~r~g~~~~~ 260 (280)
T 1uc8_A 215 -TEEVARLSVKAAEAVGGGVVAVDLFESER---GLLVNEVNHTMEFKNSV 260 (280)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEEEEEEETT---EEEEEEEETTCCCTTHH
T ss_pred -CHHHHHHHHHHHHHhCCCeEEEEEEEeCC---CeEEEEEeCCCCccchh
Confidence 24689999999999999999999999853 38999999999998754
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.91 E-value=3.3e-23 Score=199.49 Aligned_cols=235 Identities=18% Similarity=0.233 Sum_probs=161.2
Q ss_pred HHHhhhhhcceEEEEeeCCCCC--------------------------------------CcCCCccEEEEccCchhHH-
Q 019600 48 KLEGLARNKGILFVAIDQNRPL--------------------------------------SDQGPFDIVLHKLTGKEWR- 88 (338)
Q Consensus 48 ~l~~~~~~~gi~~~~id~~~~l--------------------------------------~~qg~~DvilhK~~~~~~~- 88 (338)
...+++++.|+++++||.++.- .++..+|++++-+.+....
T Consensus 26 ~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~ged 105 (346)
T 3se7_A 26 EVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGED 105 (346)
T ss_dssp HHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTS
T ss_pred HHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCC
Confidence 3667788899999999987632 0123579999888653221
Q ss_pred HHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEee
Q 019600 89 QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 167 (338)
Q Consensus 89 ~~l~~~~~~~p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (338)
..++.+.+. .|++++.| +.++..++||..+.++|+++ ||++|++.++.+.... ....++||+|+||
T Consensus 106 g~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP 172 (346)
T 3se7_A 106 GAIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKP 172 (346)
T ss_dssp SHHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEE
T ss_pred hHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEe
Confidence 134444432 47888775 89999999999999999975 8999999999643311 1346899999999
Q ss_pred CCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECC----EEEEEEEecCCCCCcccccCC
Q 019600 168 LVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTS 236 (338)
Q Consensus 168 ~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd----~v~~~~R~Slp~~~~~~~~~~ 236 (338)
..++ .|.++.++.++++|.. .+.++++||||+ |++|.|.|+|+ .+..+.+... .
T Consensus 173 ~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~~e~~~----------~ 237 (346)
T 3se7_A 173 ARSG---SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEVDQITL----------S 237 (346)
T ss_dssp SSCC---TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCCEEECC----------C
T ss_pred CCCC---CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEeeEEEec----------C
Confidence 9854 3788999999988765 367899999996 99999999987 2322222221 2
Q ss_pred Cceeee----cCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCC
Q 019600 237 AGVFRF----PRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFP 309 (338)
Q Consensus 237 ~g~~~~----~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fP 309 (338)
.++|+| ......+.. ..+..+++.. .+.++++|.++.++||+ .++++|++++. +| ++|++|||..|
T Consensus 238 ~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~rP 310 (346)
T 3se7_A 238 HGFFKIHQESTPESGSDNSAVTVPADISTTS-----RSLVQDTAKAVYRALGCRGLSRVDLFLTE-DG-KVVLNEVNTFP 310 (346)
T ss_dssp --------------CGGGSCEESSCCCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECT-TS-CEEEEEEESSC
T ss_pred CCCcCcccchhccccCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEeC-CC-CEEEEEEeCCC
Confidence 245666 332221111 1122222111 34789999999999999 68889999985 35 69999999999
Q ss_pred CCCCcccc
Q 019600 310 GYGKMPEY 317 (338)
Q Consensus 310 g~~gv~~~ 317 (338)
|+.+..-+
T Consensus 311 G~t~~s~~ 318 (346)
T 3se7_A 311 GMTSYSRY 318 (346)
T ss_dssp CCSTTCHH
T ss_pred CCCcccHH
Confidence 99866433
No 11
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.91 E-value=2e-22 Score=188.61 Aligned_cols=235 Identities=18% Similarity=0.215 Sum_probs=162.6
Q ss_pred hHHHhhhhhcceEEEEeeCCCCCCc---CCCccEEEEccCch--hHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHH
Q 019600 47 PKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGK--EWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSML 120 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l~~---qg~~DvilhK~~~~--~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~ 120 (338)
..+.++++++|++++.+|.+..... ...+|+++.+..+. +. ..++...+. -|++++ ++++++..+.||..+.
T Consensus 24 ~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~-~~~~~~~e~-~g~~~~g~~~~~~~~~~dK~~~~ 101 (306)
T 1iow_A 24 AAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGED-GTLQGMLEL-MGLPYTGSGVMASALSMDKLRSK 101 (306)
T ss_dssp HHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSS-SHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcc-hHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHH
Confidence 4688999999999999999853322 24789999887431 11 122223322 378776 8899999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCChhH------HHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc----
Q 019600 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPD------VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---- 190 (338)
Q Consensus 121 ~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~------~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~---- 190 (338)
++|+++ +|++|++..+.+. +..+ ......++||+|+||..++ +|.++.++.+.++|..
T Consensus 102 ~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~---~~~gv~~v~~~~el~~~~~~ 169 (306)
T 1iow_A 102 LLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREG---SSVGMSKVVAENALQDALRL 169 (306)
T ss_dssp HHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCC---TTTTCEEESSGGGHHHHHHH
T ss_pred HHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHH
Confidence 999975 8999999988532 2211 0012468999999999854 4678999999988764
Q ss_pred ---cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCccccccc--CCCCCCCccccCCC
Q 019600 191 ---LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELP 265 (338)
Q Consensus 191 ---l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p 265 (338)
.+.++++||||+ |++++|.++|+++..+.+.... .+++++......+.. ..+..+++..
T Consensus 170 ~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~p~~l~~~~---- 233 (306)
T 1iow_A 170 AFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPS----------GTFYDYEAKFLSDETQYFCPAGLEASQ---- 233 (306)
T ss_dssp HTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECS----------SSSSCHHHHHTCSCCEEESSCCCCHHH----
T ss_pred HHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeC----------CCeEchhheecCCCeeEEcCCCCCHHH----
Confidence 267899999996 8999999999976543332211 122222111100100 0112221111
Q ss_pred ChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 266 PRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 266 ~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
.+.++++|.++.++||+. ++++|++++. +| +++++|||..||+.+.
T Consensus 234 -~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 234 -EANLQALVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMTSH 280 (306)
T ss_dssp -HHHHHHHHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCSTT
T ss_pred -HHHHHHHHHHHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCCCCC
Confidence 346789999999999996 8899999975 45 6999999999999764
No 12
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.88 E-value=1.2e-21 Score=189.60 Aligned_cols=236 Identities=18% Similarity=0.198 Sum_probs=156.9
Q ss_pred hHHHhhhhhcceEEEEeeCCCC------------------CC-----------------cCCCccEEEEccCch--hHHH
Q 019600 47 PKLEGLARNKGILFVAIDQNRP------------------LS-----------------DQGPFDIVLHKLTGK--EWRQ 89 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~------------------l~-----------------~qg~~DvilhK~~~~--~~~~ 89 (338)
..+.+++++.|++++.||.+.. +. ....+|+|+..+.+. +. .
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~ed-~ 103 (364)
T 2i87_A 25 QNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGED-G 103 (364)
T ss_dssp HHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGSEEECSSGGGGBCTTSSBCSEEEEECCCSSSCT-T
T ss_pred HHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhcccccccccccccccccccccCCCEEEEeCCCCCCcC-H
Confidence 4577888889999999876531 11 123579999887431 11 1
Q ss_pred HHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC------ChhHHHHhcCCCCc
Q 019600 90 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS------SIPDVVLKAGLTLP 162 (338)
Q Consensus 90 ~l~~~~~~~p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~------~~~~~l~~~~l~fP 162 (338)
.++...+. -|++++.| +.++..++||..+.++|+++ ||++|++..+.+... .+.+. ...++||
T Consensus 104 ~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~~~~--~~~~g~P 173 (364)
T 2i87_A 104 TIQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEYEKYEHNILKLV--NDKLNYP 173 (364)
T ss_dssp HHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHHHHHHHHHHHHH--HHHCCSS
T ss_pred HHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhhcccchhHHHHH--HHhcCCC
Confidence 23333322 37888866 89999999999999999976 899999999853210 11111 2358999
Q ss_pred EEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCE---EEEEEEecCCCCCccc
Q 019600 163 LVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQD 232 (338)
Q Consensus 163 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~---v~~~~R~Slp~~~~~~ 232 (338)
+|+||..++| |.++.++.+.++|.. .+.++++||||+ |+++.|.|+|+. +....+.
T Consensus 174 vvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~e~--------- 239 (364)
T 2i87_A 174 VFVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGNDYPEATWPGEV--------- 239 (364)
T ss_dssp EEEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESSSCEECCCEEE---------
T ss_pred EEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCCCcEEeeeEEE---------
Confidence 9999998543 678999999988765 267899999996 899999999884 2111111
Q ss_pred ccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCC
Q 019600 233 LSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFP 309 (338)
Q Consensus 233 ~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fP 309 (338)
....++|+|......+.. ..+..+++.. .+.++++|.++.++||+ .+++||++++. +| ++||+|||..|
T Consensus 240 -~~~~~~~~~~~k~~~g~~~~~~pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rp 311 (364)
T 2i87_A 240 -VKDVAFYDYKSKYKDGKVQLQIPADLDEDV-----QLTLRNMALEAFKATDCSGLVRADFFVTE-DN-QIYINETNAMP 311 (364)
T ss_dssp -CCSCCC-----------CCEESSCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSC
T ss_pred -ecCCCcCCHHHcccCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCCcEEEEEEEEec-CC-CEEEEEEeCCC
Confidence 111234554432211110 1122222111 34789999999999999 58899999975 45 69999999999
Q ss_pred CCCCcc
Q 019600 310 GYGKMP 315 (338)
Q Consensus 310 g~~gv~ 315 (338)
|+....
T Consensus 312 g~t~~s 317 (364)
T 2i87_A 312 GFTAFS 317 (364)
T ss_dssp CCSTTS
T ss_pred CCCchh
Confidence 997653
No 13
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.88 E-value=4.2e-21 Score=187.15 Aligned_cols=241 Identities=16% Similarity=0.220 Sum_probs=164.6
Q ss_pred hHHHhhh-hhcceEEEEeeCCCC---C-----------------C--------------------cCCCccEEEEccCch
Q 019600 47 PKLEGLA-RNKGILFVAIDQNRP---L-----------------S--------------------DQGPFDIVLHKLTGK 85 (338)
Q Consensus 47 ~~l~~~~-~~~gi~~~~id~~~~---l-----------------~--------------------~qg~~DvilhK~~~~ 85 (338)
..+.++. ++.|+++++||.+.. + . +...+|+|+..+.+.
T Consensus 25 ~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~ 104 (377)
T 1ehi_A 25 QNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGN 104 (377)
T ss_dssp HHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCTTCTTCTTGGGGTTCCCSEEEEECCST
T ss_pred HHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhccccccccccccccCcchhhccccCCCEEEEecCCC
Confidence 4467788 889999999987641 1 0 123689999887542
Q ss_pred hHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC---ChhHHHHhcCCC
Q 019600 86 EWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS---SIPDVVLKAGLT 160 (338)
Q Consensus 86 ~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~---~~~~~l~~~~l~ 160 (338)
... ..++...+. -|++++ +++.++..++||..+.++|+++ |||+|++.++.+..+ ...+. ...++
T Consensus 105 ~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~--~~~~g 174 (377)
T 1ehi_A 105 LGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANNWSWDKI--VAELG 174 (377)
T ss_dssp TTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGGCCHHHH--HHHHC
T ss_pred CCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccchHHHHHH--HHhcC
Confidence 110 134444333 488888 9999999999999999999965 899999999863321 12221 23478
Q ss_pred CcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCC-cEEEEEEECCE---EEEEEEecCCCCC
Q 019600 161 LPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVT 229 (338)
Q Consensus 161 fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g-~~~KV~VIGd~---v~~~~R~Slp~~~ 229 (338)
||+|+||..++ +|.++.++.++++|.. .+.++++||||+ | ++|.|.|+|+. +....+.......
T Consensus 175 ~PvvVKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~~~ei~~~~~~ 249 (377)
T 1ehi_A 175 NIVFVKAANQG---SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVGVIGNDQPLVSEIGAHTVPNQG 249 (377)
T ss_dssp SCEEEEESSCC---TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEEEEESSSCEEEEEEEEECTTSS
T ss_pred CCEEEEeCCCC---CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEEEEcCCCcEEEeeEEEEecCCC
Confidence 99999999854 3678999999988764 267899999995 7 99999999883 4443322211000
Q ss_pred cccccCCCceeeecCccccc-c--cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEec
Q 019600 230 KQDLSTSAGVFRFPRVSCAA-A--SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDI 305 (338)
Q Consensus 230 ~~~~~~~~g~~~~~~~s~~~-~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDV 305 (338)
...++|+|......+ . ...+..+++.. .+.++++|.++.++||+. +++||++++. +| ++||+||
T Consensus 250 -----~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~vlEi 317 (377)
T 1ehi_A 250 -----SGDGWYDYNNKFVDNSAVHFQIPAQLSPEV-----TKEVKQMALDAYKVLNLRGEARMDFLLDE-NN-VPYLGEP 317 (377)
T ss_dssp -----SSSCCCCHHHHTTCCTTCEEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEE
T ss_pred -----CcCceeCHHhcccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCCcEEEEEEEEeC-CC-CEEEEEE
Confidence 012345544322111 0 01122222211 356899999999999998 8889999975 35 6899999
Q ss_pred cCCCCCCCc
Q 019600 306 NYFPGYGKM 314 (338)
Q Consensus 306 N~fPg~~gv 314 (338)
|..||+...
T Consensus 318 N~rpg~t~~ 326 (377)
T 1ehi_A 318 NTLPGFTNM 326 (377)
T ss_dssp ESSCCCSTT
T ss_pred eCCCCCCcc
Confidence 999998765
No 14
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.88 E-value=8.7e-22 Score=190.58 Aligned_cols=214 Identities=18% Similarity=0.279 Sum_probs=145.0
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC-h
Q 019600 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-I 150 (338)
Q Consensus 74 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~-~ 150 (338)
.+|+++.=+.+.... ..++.+.+. -|++.+ -++.++..++||..+.++|+++ |||+|++..+.+.... .
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 467776555442111 134454443 477776 6789999999999999999975 8999999988532211 1
Q ss_pred hHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEEEEEe
Q 019600 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRF 223 (338)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~ 223 (338)
.+. ....++||+|+||..++ +|.+|.+|.+.++|.+ .+.++++|+|| .|+.+-|.|+|+....+.
T Consensus 169 ~~~-~~~~lg~PvvVKP~~gg---~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~~-- 240 (357)
T 4fu0_A 169 MKE-IEANLTYPLFIKPVRAG---SSFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIVG-- 240 (357)
T ss_dssp HHH-HHHHCCSSEEEEETTCS---SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEEC--
T ss_pred HHH-HHHhcCCCEEEEECCCC---CCCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceEE--
Confidence 111 23469999999998843 3789999999999875 26789999999 599999999987533211
Q ss_pred cCCCCCcccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeE
Q 019600 224 SLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQF 300 (338)
Q Consensus 224 Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~ 300 (338)
+ ........++|+|......+.. ..+..+++.. .+.++++|.++.++||+. +++||++++. +| ++
T Consensus 241 --~---v~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~-----~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg-~~ 308 (357)
T 4fu0_A 241 --R---VDEIELSSGFFDYTEKYTLKSSKIYMPARIDAEA-----EKRIQEAAVTIYKALGCSGFSRVDMFYTP-SG-EI 308 (357)
T ss_dssp --C---CEEEEECHHHHTSCSBCSSCCEEEESSCSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CE
T ss_pred --E---EEEEEcccccccccccccCCCceEecCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEeC-CC-CE
Confidence 0 0011112234455443322211 1233333222 457899999999999995 7779999985 45 69
Q ss_pred EEEeccCCCCCCCcc
Q 019600 301 YVIDINYFPGYGKMP 315 (338)
Q Consensus 301 ~ViDVN~fPg~~gv~ 315 (338)
||+|||..||++...
T Consensus 309 ~vlEvNt~PG~t~~S 323 (357)
T 4fu0_A 309 VFNEVNTIPGFTSHS 323 (357)
T ss_dssp EEEEEESSCCCSTTC
T ss_pred EEEEEeCCCCCCccc
Confidence 999999999998644
No 15
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.87 E-value=4e-21 Score=188.24 Aligned_cols=258 Identities=13% Similarity=0.178 Sum_probs=161.6
Q ss_pred eEEEEEEec-ccccccc---cchHHHhhhhhcceEEEEeeCCCC------------------CCcC--------------
Q 019600 29 LVVVGYALT-SKKTKSF---LQPKLEGLARNKGILFVAIDQNRP------------------LSDQ-------------- 72 (338)
Q Consensus 29 ~~~VGy~l~-~kK~~~~---~~~~l~~~~~~~gi~~~~id~~~~------------------l~~q-------------- 72 (338)
..+|+..+= .+-.+.. +-....+++++.|+++++||.++. +...
T Consensus 37 ~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDI 116 (383)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGG
T ss_pred CCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccccccccccccccccccc
Confidence 346777552 2222332 333366778889999999998752 0010
Q ss_pred -CCccEEEEccCchhHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCC-ccCCcEEEEecCCC
Q 019600 73 -GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGK-VDVPRQLVIERDAS 148 (338)
Q Consensus 73 -g~~DvilhK~~~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~-i~~P~~~~~~~~~~ 148 (338)
..+|+++.-+.+.... ..++.+.+. -|++++ .++.++..++||..+.++|+++ + ||+|++..+.+...
T Consensus 117 ~~~~D~vf~~lhG~~GEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------G~Ipvp~~~~~~~~~~ 188 (383)
T 3k3p_A 117 YEEEAVVFPVLHGPMGEDGSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLESA-------TTIPQVAYVALIEGEP 188 (383)
T ss_dssp CCTTCEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHH-------CCCCBCCEEEEETTSC
T ss_pred ccCCCEEEEcCCCCCcchHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHhC-------CCcCCCCEEEEeCccc
Confidence 1579999877653110 134444433 478776 5689999999999999999976 8 99999999964321
Q ss_pred ---ChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEE
Q 019600 149 ---SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (338)
Q Consensus 149 ---~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v~ 218 (338)
.+.+ ....++||+|+||..++ .|.++.++.++++|.+ .+.++++||||+ |++|.|.|+|+...
T Consensus 189 ~~~~~~~--~~~~lg~PvvVKP~~gg---ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~ 261 (383)
T 3k3p_A 189 LESKLAE--VEEKLIYPVFVKPANMG---SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDV 261 (383)
T ss_dssp HHHHHHH--HHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSC
T ss_pred hhHHHHH--HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCe
Confidence 1112 23468999999998853 3789999999988864 267899999996 99999999987421
Q ss_pred EEEEecCCCCCcccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCC
Q 019600 219 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHG 295 (338)
Q Consensus 219 ~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~ 295 (338)
.+ +. ..++....++|+|......+.. ..++.+++.. .+.++++|.++.++||+. ++++|++++.
T Consensus 262 ~~---~~----~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 328 (383)
T 3k3p_A 262 KT---TL----PGEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVI-----VEKMRDYAATAFRTLGCCGLSRCDFFLTE- 328 (383)
T ss_dssp EE---CC----CEEEC-----------------CEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred eE---Ee----eEEEecCCCccchhhcccCCCeeEEecCCCCHHH-----HHHHHHHHHHHHHHcCCceEEEEEEEEEC-
Confidence 11 10 1122223356666654422211 1222232221 357899999999999997 7789999985
Q ss_pred CCCeEEEEeccCCCCCCCcc
Q 019600 296 TRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 296 ~g~~~~ViDVN~fPg~~gv~ 315 (338)
+| ++||+|||..||++...
T Consensus 329 ~g-~~~vlEINtrPG~t~~S 347 (383)
T 3k3p_A 329 DG-KVYLNELNTMPGFTQWS 347 (383)
T ss_dssp TC-CEEEEEEESSCCCC--C
T ss_pred CC-CEEEEEeeCCCCCCccc
Confidence 35 69999999999988543
No 16
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.87 E-value=6.5e-21 Score=186.78 Aligned_cols=262 Identities=13% Similarity=0.207 Sum_probs=167.4
Q ss_pred CCCceEEEEEEecc-cccccccc---hHHHhhhhhcceEEEEeeCCCCC-------------------------------
Q 019600 25 QQSKLVVVGYALTS-KKTKSFLQ---PKLEGLARNKGILFVAIDQNRPL------------------------------- 69 (338)
Q Consensus 25 ~~~~~~~VGy~l~~-kK~~~~~~---~~l~~~~~~~gi~~~~id~~~~l------------------------------- 69 (338)
+.+...+|+..+=- +-.+..+. ....++.++.|+++++||+++.-
T Consensus 18 ~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
T 3e5n_A 18 GHMRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVAL 97 (386)
T ss_dssp ---CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEE
T ss_pred hhcCCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceee
Confidence 34456677776532 22333333 33667788899999999976520
Q ss_pred ---------------CcCCCccEEEEccCchhHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCC
Q 019600 70 ---------------SDQGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSY 132 (338)
Q Consensus 70 ---------------~~qg~~DvilhK~~~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~ 132 (338)
.....+|+|+.=+.+.... ..++...+. -|++++ .++.++..++||..+.++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~------ 170 (386)
T 3e5n_A 98 LPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRDA------ 170 (386)
T ss_dssp CTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHHT------
T ss_pred ccCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC------
Confidence 0123578888777653221 134555443 477776 6789999999999999999975
Q ss_pred CCccCCcEEEEecCC---CChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEeccc
Q 019600 133 GKVDVPRQLVIERDA---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVN 202 (338)
Q Consensus 133 ~~i~~P~~~~~~~~~---~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~ 202 (338)
|||+|++.++.+.. .++.+. ...++||+|+||..++| |.++.++.++++|.. .+.++++||||+
T Consensus 171 -GIp~p~~~~~~~~~~~~~~~~~~--~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~ 244 (386)
T 3e5n_A 171 -RLAVAPFVCFDRHTAAHADVDTL--IAQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA 244 (386)
T ss_dssp -TCCBCCEEEEEHHHHTTCCHHHH--HHHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC
T ss_pred -CCCCCCEEEEeCcccchhhHHHH--HHhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 89999999985321 123322 23579999999998643 678999999988764 267899999996
Q ss_pred CCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHHHHHHH
Q 019600 203 HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRR 279 (338)
Q Consensus 203 h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~ 279 (338)
|++|.|.|+|+....+. ..+++....++|+|......+. ...++.+++.. .+.++++|.++.+
T Consensus 245 --G~E~~v~vl~~~~~~~~-------~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~ 310 (386)
T 3e5n_A 245 --GREIECAVLGNAVPHAS-------VCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQT-----QQRIQQIAVQAYQ 310 (386)
T ss_dssp --SEEEEEEEECSSSCEEE-------EEEEECC-----------------CEESSCSSCHHH-----HHHHHHHHHHHHH
T ss_pred --CeEEEEEEEeCCCceEE-------EeEEEEeCCcccchhcccCCCCCeEEEECCCCCHHH-----HHHHHHHHHHHHH
Confidence 89999999988531110 0011111223555554332110 11223232221 3468999999999
Q ss_pred HhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCcc
Q 019600 280 QLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 280 ~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 315 (338)
+||+. ++++|++++. +| ++|++|||..||++...
T Consensus 311 aLg~~G~~~vDf~~~~-dg-~~~vlEiN~~PG~t~~S 345 (386)
T 3e5n_A 311 ALGCAGMARVDVFLCA-DG-RIVINEVNTLPGFTRIS 345 (386)
T ss_dssp HHTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTC
T ss_pred HhCCccEEEEEEEEEC-CC-cEEEEEeECCCCCCccC
Confidence 99997 7789999985 35 69999999999988653
No 17
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.87 E-value=6.7e-21 Score=185.91 Aligned_cols=216 Identities=11% Similarity=0.145 Sum_probs=140.6
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-C-
Q 019600 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-S- 149 (338)
Q Consensus 74 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~-~- 149 (338)
.+|+++.-+.+.... ..++.+.+. -|++++ .++.++..++||..+.++|+++ |||+|++.++.+... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 589999887653111 135555543 478877 4688999999999999999975 899999999964332 1
Q ss_pred hhHHHHhcCCCCc-EEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEEEE
Q 019600 150 IPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVR 221 (338)
Q Consensus 150 ~~~~l~~~~l~fP-~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~ 221 (338)
.... ....++|| +|+||..++ .|.++.++.++++|.. .+.++++||||+ |++|.|.|+|+...
T Consensus 170 ~~~~-~~~~lg~P~vvVKP~~gg---ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~--- 240 (372)
T 3tqt_A 170 VYQR-LLDRWGTSELFVKAVSLG---SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP--- 240 (372)
T ss_dssp HHHH-HHHHC---CEEEEESSCC---SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---
T ss_pred HHHH-HHHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---
Confidence 1111 23458999 999999853 3789999999988764 267899999996 89999999998511
Q ss_pred EecCCCCCcccccCCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCC
Q 019600 222 RFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTR 297 (338)
Q Consensus 222 R~Slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g 297 (338)
+. ++ .+++....++|+|......+. ...++.+++.. .+.++++|.++.++||+. +++||++++. +|
T Consensus 241 ~~-~~---~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg 310 (372)
T 3tqt_A 241 KA-SL---PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESV-----TKQIQQIAIDAFKMVHCSGMARVDFFVTP-NN 310 (372)
T ss_dssp EE-CC---CEEEECC---------------CEEESCCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC
T ss_pred eE-ee---eEEEecCCCccchhhcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEEeC-CC
Confidence 00 11 112222234666654432221 11223232221 357899999999999998 7779999985 35
Q ss_pred CeEEEEeccCCCCCCCcccc
Q 019600 298 DQFYVIDINYFPGYGKMPEY 317 (338)
Q Consensus 298 ~~~~ViDVN~fPg~~gv~~~ 317 (338)
++|++|||..||++...-+
T Consensus 311 -~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 311 -KVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp -CEEEEEEESSCCCSTTCHH
T ss_pred -cEEEEEEECCCCcCccCHH
Confidence 6999999999999865433
No 18
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.87 E-value=1.2e-20 Score=179.88 Aligned_cols=206 Identities=16% Similarity=0.231 Sum_probs=144.5
Q ss_pred CCccEEEEccCchhHH-HHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCh
Q 019600 73 GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSI 150 (338)
Q Consensus 73 g~~DvilhK~~~~~~~-~~l~~~~~~~p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~ 150 (338)
..+|+|+..+.+.... ..++...+. -|++++.| +.++..++||..+.++|+++ ||++|++..+.+..+.
T Consensus 75 ~~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~- 145 (322)
T 2fb9_A 75 ERYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGEPP- 145 (322)
T ss_dssp TTCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTSCC-
T ss_pred cCCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECchhh-
Confidence 4689999888542110 123333322 37888854 99999999999999999975 8999999998643321
Q ss_pred hHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------CCCeEEEecccCCC-cEEEEEEECCE---EEE
Q 019600 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKV 219 (338)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~g-~~~KV~VIGd~---v~~ 219 (338)
. ..++||+|+||..++| |.++.++.++++|... +.++++||||+ | +++.|.|+|++ +..
T Consensus 146 --~---~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~ 215 (322)
T 2fb9_A 146 --V---VPFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEASP 215 (322)
T ss_dssp --C---CCSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEEE
T ss_pred --h---hccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEee
Confidence 1 1689999999998543 6789999999887752 57899999995 7 99999999984 332
Q ss_pred EEEecCCCCCcccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCC
Q 019600 220 VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGT 296 (338)
Q Consensus 220 ~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~ 296 (338)
..+... ..++|+|......+.. ..++.+++.. .+.++++|.++.++||+ .++++|++++ +
T Consensus 216 ~~ei~~----------~~~~~~~~~k~~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~--~ 278 (322)
T 2fb9_A 216 VGEVRY----------EAPFYDYETKYTPGRAELLIPAPLDPGT-----QETVQELALKAYKVLGVRGMARVDFFLA--E 278 (322)
T ss_dssp EEEEEE----------ECCEEETTTEEECCEEEEESSCCCCTTH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEE--T
T ss_pred eEEEee----------CCCccCHHHcccCCCeEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEE--C
Confidence 221110 0124444332211110 1222232221 45789999999999999 8889999998 3
Q ss_pred CCeEEEEeccCCCCCCCcc
Q 019600 297 RDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 297 g~~~~ViDVN~fPg~~gv~ 315 (338)
| ++||+|||..||+....
T Consensus 279 g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 279 G-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp T-EEEEEEEESSCCCSSSC
T ss_pred C-cEEEEEEECCCCCCccc
Confidence 5 79999999999998664
No 19
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.87 E-value=3.8e-21 Score=202.52 Aligned_cols=230 Identities=16% Similarity=0.200 Sum_probs=158.7
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCcCC---CccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQG---PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSML 120 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~~qg---~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~ 120 (338)
.+.+.++++|+++|++++.||++.++...+ .+|.+.. ..+.-.++..++..+.||..+.
T Consensus 428 ~S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk 489 (750)
T 3ln6_A 428 LSTQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTK 489 (750)
T ss_dssp HHHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHH
T ss_pred ccHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHH
Confidence 355779999999999999999987665322 2333321 1234567788999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEe---ChhhHhc-------
Q 019600 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK------- 190 (338)
Q Consensus 121 ~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~---~~~~L~~------- 190 (338)
++|++. |||+|++.++.+ .+++.+.+ ...++||+|+||..++ .|.||.++. +.+++.+
T Consensus 490 ~lL~~~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~G~---~G~GV~iv~~~~s~eel~~a~~~~~~ 557 (750)
T 3ln6_A 490 KILDEK-------HFPTPFGDEFTD-RKEALNYF-SQIQDKPIVVKPKSTN---FGLGISIFKTSANLASYEKAIDIAFT 557 (750)
T ss_dssp HHHHHT-------TCCCCCCCCEET-TTTHHHHH-HHSSSSCEEEEETTCC---SSSSCEEESSCCCHHHHHHHHHHHHH
T ss_pred HHHHHC-------CcCCCCEEEECC-HHHHHHHH-HHhcCCcEEEEeCCCC---CCCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 999975 899999998863 33443322 2468999999998743 477999998 7777654
Q ss_pred cCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCccc---------------ccC--------------------
Q 019600 191 LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQD---------------LST-------------------- 235 (338)
Q Consensus 191 l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~---------------~~~-------------------- 235 (338)
.+.++++||||+ |++|+|+|+||+++.+.++..+.+..+. +..
T Consensus 558 ~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l 635 (750)
T 3ln6_A 558 EDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLML 635 (750)
T ss_dssp HCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHH
T ss_pred hCCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHH
Confidence 267899999996 8999999999999987555444321110 000
Q ss_pred -----------CCce--e--eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeC------
Q 019600 236 -----------SAGV--F--RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREH------ 294 (338)
Q Consensus 236 -----------~~g~--~--~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~------ 294 (338)
..|. + .-.|.+.+|...+.+ .++ .+.++++|.++++++|+.+.|||++.++
T Consensus 636 ~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~t------d~i--~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~ 707 (750)
T 3ln6_A 636 EQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVT------NTM--DPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYS 707 (750)
T ss_dssp HHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECT------TTS--CHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCC
T ss_pred HHcCCCccccCCCCCEEEEeecccccCCCceeecc------ccC--CHHHHHHHHHHHHHhCCCeEEEEEEecCcccccc
Confidence 0000 0 001122111110000 112 3567999999999999999999999975
Q ss_pred -CCCCeEEEEeccCCCCCCCc
Q 019600 295 -GTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 295 -~~g~~~~ViDVN~fPg~~gv 314 (338)
..| .++|||||..||+.+.
T Consensus 708 ~~~~-~~~iiEvN~~pg~~~h 727 (750)
T 3ln6_A 708 KDKK-NATCIELNFNPLMYMH 727 (750)
T ss_dssp TTTT-CCEEEEEESSCCCHHH
T ss_pred ccCC-CeEEEEEcCCcchhhh
Confidence 123 5799999999998654
No 20
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.86 E-value=1.4e-20 Score=182.69 Aligned_cols=210 Identities=13% Similarity=0.243 Sum_probs=144.6
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC---C
Q 019600 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA---S 148 (338)
Q Consensus 74 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~---~ 148 (338)
.+|+++.=+.+.... ..++.+.+. -|++++.| +.++..++||..+.++|+++ |||+|++..+.+.. .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 169 (364)
T 3i12_A 98 TVDVIFPIVHGTLGEDGSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRHAF 169 (364)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGGGC
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccchh
Confidence 578888776542110 134454433 47888765 79999999999999999975 89999999996432 1
Q ss_pred ChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEE---E
Q 019600 149 SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAI---K 218 (338)
Q Consensus 149 ~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v---~ 218 (338)
++.+. ...++||+|+||..++ .|.++.++.++++|.. .+.++++||||+ |++|.|.|+|+.. .
T Consensus 170 ~~~~~--~~~lg~PvvVKP~~gg---ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~ 242 (364)
T 3i12_A 170 SFAEV--ESRLGLPLFVKPANQG---SSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNPQAS 242 (364)
T ss_dssp CHHHH--HHHHCSSEEEEETTCC---TTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEEE
T ss_pred hHHHH--HHhcCCCEEEEECCCC---CCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCceEe
Confidence 33332 2357899999999854 3678999999988764 267899999995 7999999998752 2
Q ss_pred EEEEecCCCCCcccccCCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeC
Q 019600 219 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREH 294 (338)
Q Consensus 219 ~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~ 294 (338)
...+.. ...++|+|......+. ...++.+++.. .+.++++|.++.++||+. ++++|++++.
T Consensus 243 ~~~ei~----------~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 243 TCGEIV----------LNSEFYAYDTKYIDDNGAQVVVPAQIPSEV-----NDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEE----------CCTTCC--TTTTSGGGGCEEESSCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred eeEEEe----------cCCCccCHHHcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 221111 1123455554332211 11223332221 347899999999999995 7789999985
Q ss_pred CCCCeEEEEeccCCCCCCCcc
Q 019600 295 GTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 295 ~~g~~~~ViDVN~fPg~~gv~ 315 (338)
+| ++|++|||..||+....
T Consensus 308 -~g-~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 308 -DN-EVVINEINTLPGFTNIS 326 (364)
T ss_dssp -TC-CEEEEEEESSCCCSTTC
T ss_pred -CC-CEEEEEeeCCCCCCCCC
Confidence 35 69999999999998654
No 21
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.86 E-value=9e-21 Score=181.98 Aligned_cols=233 Identities=16% Similarity=0.242 Sum_probs=155.9
Q ss_pred hHHHhhhhhcceEEEEeeCCCCC---------------------------------C-----cCCCccEEEEccCchhH-
Q 019600 47 PKLEGLARNKGILFVAIDQNRPL---------------------------------S-----DQGPFDIVLHKLTGKEW- 87 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l---------------------------------~-----~qg~~DvilhK~~~~~~- 87 (338)
..+.++.++.|++++.||.+... . ....+|+|+..+.+...
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~ge 104 (343)
T 1e4e_A 25 IEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGE 104 (343)
T ss_dssp HHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEEEEETTEEEEEECSEEEECCCSTTTT
T ss_pred HHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceecccccccccceeecccccccccCCEEEEeCCCCCCc
Confidence 34677778888888888764311 0 01246777766543110
Q ss_pred HHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEe
Q 019600 88 RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAK 166 (338)
Q Consensus 88 ~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvK 166 (338)
-..++...+. -|++++ .++.++..++||..+.++|+++ +|++|++..+.+.. +... ..++||+|+|
T Consensus 105 d~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~-~~~~----~~~~~PvvvK 171 (343)
T 1e4e_A 105 DGSIQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDD-RPVA----ATFTYPVFVK 171 (343)
T ss_dssp SSHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTC-CCCG----GGSCSCEEEE
T ss_pred CHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechh-hhhh----hccCCCEEEE
Confidence 0123333322 478877 6799999999999999999975 89999999985332 2221 4589999999
Q ss_pred eCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCE----EEEEEEecCCCCCcccccC
Q 019600 167 PLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLST 235 (338)
Q Consensus 167 p~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~----v~~~~R~Slp~~~~~~~~~ 235 (338)
|..++ +|.++.++.++++|.. .+.++++||||+ |++|.|.|+|+. +....+...
T Consensus 172 P~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~~ei~~---------- 236 (343)
T 1e4e_A 172 PARSG---SSFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVGEVDQIRL---------- 236 (343)
T ss_dssp ESSCC---TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEECCCEEEEE----------
T ss_pred eCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEEeeeEEEee----------
Confidence 99854 3678999999988764 267899999995 899999999764 211112110
Q ss_pred CCceeeecCccc----cccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCC
Q 019600 236 SAGVFRFPRVSC----AAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYF 308 (338)
Q Consensus 236 ~~g~~~~~~~s~----~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~f 308 (338)
..++|+|..... .+.. ..+..+++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||..
T Consensus 237 ~~~~~~~~~k~~~~~~~g~~~~~~p~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~r 309 (343)
T 1e4e_A 237 QYGIFRIHQEVEPEKGSENAVITVPADLSAEE-----RGRIQETVKKIYKTLGCRGLARVDMFLQD-NG-RIVLNEVNTL 309 (343)
T ss_dssp SSSCCCGGGSSSGGGCCSSEEECSSCSSCHHH-----HHHHHHHHHHHHHHTTCEEEEEEEEEECT-TC-CEEEEEEESS
T ss_pred CCCccCHhhcccccCCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCceEEEEEEEEeC-CC-CEEEEEeeCC
Confidence 112344433221 1110 1122221111 357899999999999995 8899999975 45 6999999999
Q ss_pred CCCCCc
Q 019600 309 PGYGKM 314 (338)
Q Consensus 309 Pg~~gv 314 (338)
||+...
T Consensus 310 pg~t~~ 315 (343)
T 1e4e_A 310 PGFTSY 315 (343)
T ss_dssp CCCSTT
T ss_pred CCCCcc
Confidence 999864
No 22
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.85 E-value=2.7e-20 Score=181.20 Aligned_cols=222 Identities=16% Similarity=0.165 Sum_probs=151.1
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-Ch
Q 019600 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-SI 150 (338)
Q Consensus 74 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~-~~ 150 (338)
.+|+++.-+.+.... ..++...+. -|++++ .++.++..++||..+.++|+++ ||++|++..+.+... ++
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCchHHH
Confidence 478888776542111 134444433 488887 7799999999999999999976 899999999853321 22
Q ss_pred hHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCC-cE---EEEEEECCEEEE
Q 019600 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGG-VL---FKVYIVGEAIKV 219 (338)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g-~~---~KV~VIGd~v~~ 219 (338)
.+ ...++||+|+||..++ +|.++.++.++++|.. .+.++++||||+ | ++ +.|.| ++++.+
T Consensus 179 ~~---~~~lg~PvvVKP~~g~---ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~v~v-~g~~~~ 249 (367)
T 2pvp_A 179 LD---LMNFNFPFIVKPSNAG---SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAGCKI-KKDFCF 249 (367)
T ss_dssp HH---HCCSCSCEEEEESSCC---TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEEEEE-TTEEEE
T ss_pred HH---HhccCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEEEEE-CCEEEE
Confidence 21 3568999999999854 3678999999988764 267899999995 7 89 77888 887443
Q ss_pred E-EEecCCCCCcccccCCCceeeecCcccccc--cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCC
Q 019600 220 V-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAA--SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHG 295 (338)
Q Consensus 220 ~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~ 295 (338)
. .+.. + ..++|+|......+. ...+..+++.. .+.++++|.++.++||+. ++++|++++
T Consensus 250 ~~~ei~-~---------~~~~~d~~~ky~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~-- 312 (367)
T 2pvp_A 250 SYIEEP-N---------KQEFLDFKQKYLDFSRNKAPKASLSNAL-----EEQLKENFKKLYSDLFDGAIIRCDFFVI-- 312 (367)
T ss_dssp EEEEET-T---------TTEEECCCCSSCCSCCCSCCCCCCCHHH-----HHHHHHHHHHHHTTTSTTCCEEEEEEEE--
T ss_pred EEEEEe-c---------CCceEcccccccCCCeeEEecCCCCHHH-----HHHHHHHHHHHHHHcCCCCEEEEEEEEE--
Confidence 3 2322 1 124566654332221 11222222111 356899999999999985 788999997
Q ss_pred CCCeEEEEeccCCCCCCCcccchHHHHHHHHHHHHh
Q 019600 296 TRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQS 331 (338)
Q Consensus 296 ~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~~i~~ 331 (338)
+| ++||+|||..||+.+..-++ -+.+++.+++..
T Consensus 313 ~g-~~~vlEiN~rpg~t~~s~~p-~~~~l~~~li~~ 346 (367)
T 2pvp_A 313 EN-EVYLNEINPIPGSLANYLFD-DFKTTLENLAQS 346 (367)
T ss_dssp TT-EEEEEEEESSCGGGGGGGSS-SHHHHHHHHHHH
T ss_pred CC-eEEEEEEeCCCCCCcccccC-CHHHHHHHHHhC
Confidence 34 79999999999987543333 345555555544
No 23
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.85 E-value=5.2e-20 Score=179.49 Aligned_cols=214 Identities=16% Similarity=0.181 Sum_probs=143.8
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC-h
Q 019600 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-I 150 (338)
Q Consensus 74 ~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ViDp-~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~-~ 150 (338)
.+|+|+.=+.+... -..++.+.+. -|++++.| +.++..++||..|.++|+++ ||++|++..+.+.... .
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 180 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRSTLH 180 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCCCC
T ss_pred CccEEEECCCCCCCccHHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccchh
Confidence 47888876643210 0133444332 37888876 89999999999999999975 8999999999643321 1
Q ss_pred hHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhc-------cCCCeEEEecccCCCcEEEEEEECCEEEEEEEe
Q 019600 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRF 223 (338)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~ 223 (338)
.. ....++||+|+||..++| |.++.++.++++|.. .+.++++||||+ |++|.|.|+|+.-..+ +.
T Consensus 181 ~~--~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~-~~ 252 (373)
T 3lwb_A 181 RQ--ECERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGTL-EA 252 (373)
T ss_dssp HH--HHHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSCE-EE
T ss_pred HH--HHHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCce-EE
Confidence 22 234589999999998543 778999999988764 267899999996 8999999998741100 00
Q ss_pred cCCCCCcccccCC--Cc----eeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeC
Q 019600 224 SLPDVTKQDLSTS--AG----VFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREH 294 (338)
Q Consensus 224 Slp~~~~~~~~~~--~g----~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~ 294 (338)
+ + .+++... .+ +|+|......+.. ..++.+++.. .+.++++|.++.++||+ .++++|++++.
T Consensus 253 ~-~---~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 323 (373)
T 3lwb_A 253 S-T---LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQV-----AEAIRQLAIRAFAAIDCRGLARVDFFLTD 323 (373)
T ss_dssp C-C---CEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEEET
T ss_pred e-e---eeEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEEEC
Confidence 0 0 0011111 12 5555433221110 1223232221 35789999999999999 58889999986
Q ss_pred CCCCeEEEEeccCCCCCCCcc
Q 019600 295 GTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 295 ~~g~~~~ViDVN~fPg~~gv~ 315 (338)
+| + ||+|||..||+....
T Consensus 324 -dg-~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 324 -DG-P-VINEINTMPGFTTIS 341 (373)
T ss_dssp -TE-E-EEEEEESSCCCSTTS
T ss_pred -CC-C-EEEEecCCCCCCccc
Confidence 45 6 999999999988644
No 24
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.84 E-value=3.4e-20 Score=195.18 Aligned_cols=233 Identities=15% Similarity=0.155 Sum_probs=157.9
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCc-eeeChHHHHHHhccHHHHHHH
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEV-TVLDPPYAIQHLHNRQSMLQC 122 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v-~ViDp~~ai~~l~dR~~~~~~ 122 (338)
.+.+.++++|.++|++++.|+++.++...|--|.+- .+. ++. ..-++..++..+.||..+.++
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~~-~ig---------------~~~~t~~~s~~aa~~~~DK~~tk~l 496 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIE-YVK---------------NGNMTSHDSYISPLIMENKVVTKKV 496 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTTTEEEEEETTEEE-EEE---------------TTTBCSSSBSHHHHHHHHSHHHHHH
T ss_pred CCHHHHHHHHHHhCCCEEEECCCHHHHHhcccccce-eec---------------cCccCCCCHHHHHHHhcCHHHHHHH
Confidence 456679999999999999999998765433222221 111 233 345778899999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEE----eChhhHhc-------c
Q 019600 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA----YDQYSLKK-------L 191 (338)
Q Consensus 123 L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv----~~~~~L~~-------l 191 (338)
|++. |||+|++.++.+ .+++.+. ....++||+|+||..++ +|.||.++ .+.+++.. .
T Consensus 497 L~~~-------GIPvP~~~~~~~-~~ea~~~-~~~~~g~PvVVKP~~g~---~G~GV~iv~~~v~~~eel~~al~~a~~~ 564 (757)
T 3ln7_A 497 LQKA-------GFNVPQSVEFTS-LEKAVAS-YALFENRAVVIKPKSTN---YGLGITIFQQGVQNREDFAKALEIAFRE 564 (757)
T ss_dssp HHHH-------TCCCCCEEEESC-HHHHHHG-GGGSSSSCEEEEESSCS---TTTTCEECSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHC-------CcCCCCEEEECC-HHHHHHH-HHHhcCCCEEEEeCCCC---CCCCeEEecCCCCCHHHHHHHHHHHHhc
Confidence 9976 899999998852 2222111 11468999999998854 47799998 78877764 2
Q ss_pred CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCccc---------------cc----------------------
Q 019600 192 EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQD---------------LS---------------------- 234 (338)
Q Consensus 192 ~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~---------------~~---------------------- 234 (338)
+..+++||||+ |++++|+|+||+++.+.++..+++.-+. +.
T Consensus 565 ~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~ 642 (757)
T 3ln7_A 565 DKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLK 642 (757)
T ss_dssp CSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHH
T ss_pred CCcEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHH
Confidence 67899999994 8999999999999987555444321000 00
Q ss_pred ---------CCCce-e---eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCC------
Q 019600 235 ---------TSAGV-F---RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG------ 295 (338)
Q Consensus 235 ---------~~~g~-~---~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~GvDvi~~~~------ 295 (338)
...|. + .-+|.+.+|...+.+ .++ .+..+++|.++++++|+.+.||||+.++-
T Consensus 643 ~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvt------d~i--~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~ 714 (757)
T 3ln7_A 643 EQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMT------DEM--HESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATP 714 (757)
T ss_dssp HHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECT------TTS--CHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCS
T ss_pred HcCCCccccCCCCCEEEeecccccccCccceecc------ccC--CHHHHHHHHHHHHHhCCCEEEEEEEecCccccccc
Confidence 00111 0 011222222111100 112 35679999999999999999999999741
Q ss_pred CCCeEEEEeccCCCCCCCc
Q 019600 296 TRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 296 ~g~~~~ViDVN~fPg~~gv 314 (338)
.++.+.|||||..||+.+.
T Consensus 715 ~~~~~~iiEvN~~P~~~~h 733 (757)
T 3ln7_A 715 NLTSWGVIEANFNPMMMMH 733 (757)
T ss_dssp STTTCEEEEEESSCCHHHH
T ss_pred cCCCeEEEEEcCCcchhhh
Confidence 1124799999999997654
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.80 E-value=6.2e-19 Score=164.91 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=148.1
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCC-C-----------------------------cCCCccEEEEccCch---hH--H
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPL-S-----------------------------DQGPFDIVLHKLTGK---EW--R 88 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l-~-----------------------------~qg~~DvilhK~~~~---~~--~ 88 (338)
.....+.++++++|++++.+|++... . ....+|+|+.+.... ++ .
T Consensus 19 ~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~ 98 (316)
T 1gsa_A 19 DSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYA 98 (316)
T ss_dssp CHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHH
T ss_pred ChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHH
Confidence 44566899999999999999875311 0 011478999887542 11 1
Q ss_pred HHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 019600 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (338)
Q Consensus 89 ~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (338)
..+.+..+. .|++++|+++++..+.||+.+.+.|+ ++|++..++ +.+++.+.+.. ++ |+|+||.
T Consensus 99 ~~~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~~--~~-p~vvKP~ 162 (316)
T 1gsa_A 99 TYILERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWEK--HS-DIILKPL 162 (316)
T ss_dssp HHHHHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHHH--HS-SEEEECS
T ss_pred HHHHHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHHH--cC-CEEEEEC
Confidence 122232323 47889999999999999999877542 899999884 22223332222 45 9999998
Q ss_pred CCCCCCcceeeEEEe-ChhhHhc-------c-CCCeEEEecccCC-CcEEEEEEECCEEEE-E-EEecCCCCCcccccCC
Q 019600 169 VADGSAKSHELSLAY-DQYSLKK-------L-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV-V-RRFSLPDVTKQDLSTS 236 (338)
Q Consensus 169 ~a~Gs~~sh~m~iv~-~~~~L~~-------l-~~p~vvQeFI~h~-g~~~KV~VIGd~v~~-~-~R~Slp~~~~~~~~~~ 236 (338)
.++ +|+++.++. +.++|.. . ..++++||||+.. +.+++++++|+++.+ . .|.+.. ++|..
T Consensus 163 ~g~---~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~~~~----~~~~~- 234 (316)
T 1gsa_A 163 DGM---GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQG----GETRG- 234 (316)
T ss_dssp SCC---TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCS----SCSCC-
T ss_pred CCC---CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEeCCC----CCcee-
Confidence 843 578899998 7766543 2 3689999999852 799999999999875 3 554321 12211
Q ss_pred CceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH---hCCcEeEEEEEEeCCCCCeEEEEeccC-C-CCC
Q 019600 237 AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ---LGLRLFNLDIIREHGTRDQFYVIDINY-F-PGY 311 (338)
Q Consensus 237 ~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~---LGl~l~GvDvi~~~~~g~~~~ViDVN~-f-Pg~ 311 (338)
+++. ++. ..+. ++ .+.++++|.++.++ +|+.++|+|++ | . ||+|||. + ||+
T Consensus 235 ----~~~~---gg~-~~~~-------~~--~~~~~~~a~~~~~~l~~~g~~~~~vD~~-----g-~-~~iEvN~r~~~~~ 290 (316)
T 1gsa_A 235 ----NLAA---GGR-GEPR-------PL--TESDWKIARQIGPTLKEKGLIFVGLDII-----G-D-RLTEINVTSPTCI 290 (316)
T ss_dssp ----CGGG---TCE-EEEE-------EC--CHHHHHHHHHHHHHHHHTTCCEEEEEEE-----T-T-EEEEEECSSCCCH
T ss_pred ----EEcc---CCc-cccC-------CC--CHHHHHHHHHHHHHHHhCCCcEEEEEec-----C-C-EEEEEcCCCCcch
Confidence 1111 110 1111 11 24568899988877 59999999998 4 3 6999999 5 587
Q ss_pred CCc
Q 019600 312 GKM 314 (338)
Q Consensus 312 ~gv 314 (338)
..+
T Consensus 291 ~~~ 293 (316)
T 1gsa_A 291 REI 293 (316)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 26
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.75 E-value=6.5e-17 Score=157.58 Aligned_cols=239 Identities=13% Similarity=0.135 Sum_probs=156.3
Q ss_pred EEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCC---------------------CccEEEEccCchhHH
Q 019600 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG---------------------PFDIVLHKLTGKEWR 88 (338)
Q Consensus 30 ~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg---------------------~~DvilhK~~~~~~~ 88 (338)
.+||..-.-. +...+.++|+++|++++.+|.+..-.... ..|+|..-... ...
T Consensus 15 k~IlIlG~G~-----~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~-~~~ 88 (389)
T 3q2o_A 15 KTIGIIGGGQ-----LGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFEN-IDY 88 (389)
T ss_dssp SEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCC-CCH
T ss_pred CEEEEECCCH-----HHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecccc-ccH
Confidence 3555554432 45678999999999999999865221111 23333211110 111
Q ss_pred HHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 019600 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (338)
Q Consensus 89 ~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (338)
..++...+. ++ +-.+++++..+.||..+.+.|+++ +|++|++..+.+ .+++.+.. ..++||+|+||.
T Consensus 89 ~~~~~l~~~--g~-~~~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~ 155 (389)
T 3q2o_A 89 RCLQWLEKH--AY-LPQGSQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEAI--AELSYPSVLKTT 155 (389)
T ss_dssp HHHHHHHHH--SC-CTTCSHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--HHHCSSEEEEES
T ss_pred HHHHHHHhh--Cc-cCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhcCCCEEEEeC
Confidence 223333333 33 678999999999999999999976 899999998852 22233322 347899999998
Q ss_pred CCCCCCcceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCcccccCCCcee
Q 019600 169 VADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVF 240 (338)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~ 240 (338)
.+.| .+.+|.++.++++|.+. +.++++||||+ +++++.|.++++ ++.+. |-. +.....|++
T Consensus 156 ~~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~-----~~~---e~~~~~g~~ 224 (389)
T 3q2o_A 156 TGGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVF-----PVA---ENIHVNNIL 224 (389)
T ss_dssp SCCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEEC-----CCE---EEEEETTEE
T ss_pred CCCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEe-----cCe---eeEEcCCce
Confidence 8532 36899999999998763 57999999997 359999999965 23221 100 000011222
Q ss_pred eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 241 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
... ..+..+++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.+
T Consensus 225 ~~~--------~~p~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viEiNpR~~~s~ 283 (389)
T 3q2o_A 225 HES--------IVPARITEEL-----SQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINELAPRPHNSG 283 (389)
T ss_dssp EEE--------EESCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGG
T ss_pred EEE--------ECCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEEeeCCCCCch
Confidence 110 0122232222 357899999999999997 7889999975 35 699999999998653
No 27
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.75 E-value=1.3e-16 Score=154.64 Aligned_cols=227 Identities=13% Similarity=0.135 Sum_probs=149.2
Q ss_pred chHHHhhhhhcceEEEEeeCCCCC--CcC-------------------CCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPL--SDQ-------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l--~~q-------------------g~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi 104 (338)
...+.++++++|++++.+|.+..- ... ..+|+|+.-..+ .....+. +.++ -|+++.
T Consensus 13 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~-~~~~~~~-~l~~-~gi~~~ 89 (380)
T 3ax6_A 13 GKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEH-IDVQTLK-KLYN-EGYKIH 89 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSC-SCHHHHH-HHHH-TTCEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccC-CCHHHHH-HHHH-CCCeEC
Confidence 456888899999999999985321 110 135666642211 1112222 3322 477788
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeC
Q 019600 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (338)
Q Consensus 105 Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (338)
++++++..+.||..+.+.|+++ +||+|++..+++. .+ ....++||+|+||..++ -+|.++.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~----~~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~ 154 (380)
T 3ax6_A 90 PSPYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDL----ES--DVREFGFPVVQKARKGG--YDGRGVFIIKN 154 (380)
T ss_dssp SCHHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSH----HH--HHHTTCSSEEEEESCCC-------EEEECS
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCH----HH--HHHhcCCCEEEEecCCC--CCCCCeEEECC
Confidence 9999999999999999999975 8999999987521 11 22468999999998843 13678999999
Q ss_pred hhhHhcc-CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCCcccccCCCceeeecCcccccccCCCCCCCc
Q 019600 185 QYSLKKL-EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 259 (338)
Q Consensus 185 ~~~L~~l-~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 259 (338)
.++|... +.++++||||+. |+++.|.++++ ++.+. ..... +. ...+.++.. ..+..+++
T Consensus 155 ~~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~--~~-----~~~~~~~~~--------~~p~~l~~ 218 (380)
T 3ax6_A 155 EKDLENAIKGETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMY--FD-----EDANICDTV--------IAPARIEE 218 (380)
T ss_dssp GGGGGGCCCSSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CEE--------EESCSSCH
T ss_pred HHHHHHHhcCCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeee--ec-----ccCCeeEEE--------ECCCCCCH
Confidence 9998764 578999999963 89999999964 44432 11111 00 011111110 01122221
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 260 CVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 260 ~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
.. .+.++++|.++.++||+. ++++|++++. +| +++|+|||.-||..+
T Consensus 219 ~~-----~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g-~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 219 KY-----SKIAREIATSVVEALEGVGIFGIEMFLTK-QG-EILVNEIAPRPHNSG 266 (380)
T ss_dssp HH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEESSCCGGG
T ss_pred HH-----HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEecCCCCCCc
Confidence 11 346799999999999994 7889999985 45 699999999999754
No 28
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.74 E-value=5.3e-16 Score=152.59 Aligned_cols=230 Identities=14% Similarity=0.164 Sum_probs=142.5
Q ss_pred hHHHhhhhhcceEEEEeeCCCC-CCcC-CCccEEEE-ccC-ch-hHHHHHH----------------------HHHHhCC
Q 019600 47 PKLEGLARNKGILFVAIDQNRP-LSDQ-GPFDIVLH-KLT-GK-EWRQILE----------------------EYRQTHP 99 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~-l~~q-g~~Dvilh-K~~-~~-~~~~~l~----------------------~~~~~~p 99 (338)
+.++++|+++|++++.+|.... ...+ .-.|-.++ -.+ +. ...+.+. ..+.+.-
T Consensus 18 ~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~l 97 (425)
T 3vot_A 18 PFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEAL 97 (425)
T ss_dssp CHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHc
Confidence 4478899999999999976532 2221 12232221 111 11 1111111 2222223
Q ss_pred CceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceee
Q 019600 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (338)
Q Consensus 100 ~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m 179 (338)
|++ =.++++++.++||..|.+.|+++ +||+|++..+++ .+++ ....++||+|+||..+ + +|.+|
T Consensus 98 glp-g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~----~~~~~g~P~vvKp~~g--~-gs~Gv 161 (425)
T 3vot_A 98 NLP-GLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHT-LADL----ENRKLSYPLVVKPVNG--F-SSQGV 161 (425)
T ss_dssp TCS-SCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESS-GGGG----TTCCCCSSEEEEESCC--------C
T ss_pred CCC-CCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCc-HHHH----HHhhcCCcEEEEECCC--C-CCCCc
Confidence 443 25789999999999999999975 899999999853 2222 2357999999999874 3 58899
Q ss_pred EEEeChhhHhcc------------------CCCeEEEecccCCCcEEEEEE--ECCEEEEE--EEecCCCCCcccccCCC
Q 019600 180 SLAYDQYSLKKL------------------EPPLVLQEFVNHGGVLFKVYI--VGEAIKVV--RRFSLPDVTKQDLSTSA 237 (338)
Q Consensus 180 ~iv~~~~~L~~l------------------~~p~vvQeFI~h~g~~~KV~V--IGd~v~~~--~R~Slp~~~~~~~~~~~ 237 (338)
.++.++++|.+. +.++++||||+ |..|-|.+ .++++.+. .++....
T Consensus 162 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~---------- 229 (425)
T 3vot_A 162 VRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSK---------- 229 (425)
T ss_dssp EEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCC----------
T ss_pred eEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccC----------
Confidence 999999887641 46799999995 77776644 46665432 2322110
Q ss_pred ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEeccCCCCCCCcc
Q 019600 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 315 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~--l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 315 (338)
+.+...... ..++.+++.. .+.+.++|.++.++||+. .+.+|++++. +| ++|++|||.-||-.+++
T Consensus 230 ~~~~~~~~~-----~~Pa~l~~~~-----~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~gG~~~~ 297 (425)
T 3vot_A 230 GPFFEEGVY-----IAPAQLKEET-----RLAIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIGGSGVS 297 (425)
T ss_dssp CSBCCCCEE-----EESCCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCGGGGHH
T ss_pred CCccccceE-----eecccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCCCCCch
Confidence 000000000 0122232221 346789999999999983 7889999985 45 68999999999866655
Q ss_pred c
Q 019600 316 E 316 (338)
Q Consensus 316 ~ 316 (338)
.
T Consensus 298 ~ 298 (425)
T 3vot_A 298 H 298 (425)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.73 E-value=4.7e-16 Score=151.31 Aligned_cols=236 Identities=14% Similarity=0.170 Sum_probs=154.9
Q ss_pred eEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCc-C-C-------------------CccEEEEccCchhH
Q 019600 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD-Q-G-------------------PFDIVLHKLTGKEW 87 (338)
Q Consensus 29 ~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~-q-g-------------------~~DvilhK~~~~~~ 87 (338)
..+||..-.- ..-..++.+|+++|++++.+|.+..-.. + . ..|+|..-... ..
T Consensus 12 ~~~IlIlG~G-----~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~-~~ 85 (377)
T 3orq_A 12 GATIGIIGGG-----QLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFEN-IS 85 (377)
T ss_dssp TCEEEEECCS-----HHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTT-SC
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccc-cC
Confidence 3455555443 2345688899999999999998642110 0 0 24554322111 11
Q ss_pred HHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEee
Q 019600 88 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 167 (338)
Q Consensus 88 ~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (338)
...+....+. . .|..++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+.. ..++||+|+||
T Consensus 86 ~~~l~~l~~~-~--~v~p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvKp 152 (377)
T 3orq_A 86 AQQLKLLCEK-Y--NIPQGYQAIQLLQDRLTEKETLKSA-------GTKVVPFISVK-ESTDIDKAI--ETLGYPFIVKT 152 (377)
T ss_dssp HHHHHHHHHH-S--CCTTTTHHHHHHHSHHHHHHHHHHT-------TCCBCCEEEEC-SSTHHHHHH--HHTCSSEEEEE
T ss_pred HHHHHHHhhh-c--CCCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHHH--HHcCCCEEEEe
Confidence 1233333333 2 4558899999999999999999876 89999999885 333344332 35899999999
Q ss_pred CCCCCCCcceeeEEEeChhhHhcc-----CCCeEEEecccCCC-cEEEEEEE-C--CEEEEEEEecCCCCCcccccCCCc
Q 019600 168 LVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGG-VLFKVYIV-G--EAIKVVRRFSLPDVTKQDLSTSAG 238 (338)
Q Consensus 168 ~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~g-~~~KV~VI-G--d~v~~~~R~Slp~~~~~~~~~~~g 238 (338)
..+ |+ +|+++.++.++++|.+. +.++++||||+ | +++.|.++ + +.+.+. |-. +.....+
T Consensus 153 ~~g-g~-~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~~-----~~~---e~~~~~g 220 (377)
T 3orq_A 153 RFG-GY-DGKGQVLINNEKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITFF-----PLQ---ENEHRNQ 220 (377)
T ss_dssp SSS-CC-TTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEEC-----CCE---EEEEETT
T ss_pred CCC-CC-CCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEEE-----CCE---eEEEECC
Confidence 884 33 57899999999887653 57999999996 6 89999999 3 233321 100 0000112
Q ss_pred eeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 239 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
.+... ..+..+ ++.+.++++|.++.++||+. +++||++++. +| ++||+|||.-||-.
T Consensus 221 ~~~~~--------~~Pa~l-------~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g-~~~v~EinpR~~~s 278 (377)
T 3orq_A 221 ILFKT--------IVPARI-------DKTAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NN-QLYVNEIAPRPHNS 278 (377)
T ss_dssp EEEEE--------EESCSS-------CCHHHHHHHHHHHHTTSCCCEEEEEEEEEET-TC-CEEEEEEESSCCGG
T ss_pred EEEEE--------ECCCCC-------CHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEeeCCcCCC
Confidence 22110 012222 12467899999999999997 7899999985 34 69999999999933
No 30
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.72 E-value=1.6e-16 Score=157.04 Aligned_cols=240 Identities=14% Similarity=0.128 Sum_probs=156.9
Q ss_pred ceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCC-----c---CC-------------CccEEEEccCchh
Q 019600 28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLS-----D---QG-------------PFDIVLHKLTGKE 86 (338)
Q Consensus 28 ~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~-----~---qg-------------~~DvilhK~~~~~ 86 (338)
+..+||..-.- ...+.++.+|+++|++++.+|.+..-. + .. ..|+|+.-... .
T Consensus 34 ~~~~IlIlG~G-----~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~e~-~ 107 (419)
T 4e4t_A 34 PGAWLGMVGGG-----QLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFEN-V 107 (419)
T ss_dssp TTCEEEEECCS-----HHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECCTT-C
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEccCc-C
Confidence 34456655443 245678999999999999999753110 0 11 25677632211 1
Q ss_pred HHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcC----CCCc
Q 019600 87 WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAG----LTLP 162 (338)
Q Consensus 87 ~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~----l~fP 162 (338)
....+ ++.++. .++..++++++.+.||..+.+.|+++ |||+|++..+++ .+++.+. ... + ||
T Consensus 108 ~~~~~-~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~-~~e~~~~--~~~~~~~~-~P 173 (419)
T 4e4t_A 108 PAASL-DFLART--TFVAPAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIES-AAALAAL--DDAALDAV-LP 173 (419)
T ss_dssp CHHHH-HHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECS-HHHHHTS--CHHHHHTT-CS
T ss_pred CHHHH-HHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHH--HHhhcccc-CC
Confidence 12233 333343 47899999999999999999999876 899999998852 2112111 123 7 99
Q ss_pred EEEeeCCCCCCCcceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCccccc
Q 019600 163 LVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLS 234 (338)
Q Consensus 163 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~ 234 (338)
+|+||... |+ ++.++.++.++++|... +.++++||||+. ++.+.|.++++ .+.+. |-. ...
T Consensus 174 ~VvKp~~~-g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~~-----~~~--e~~- 242 (419)
T 4e4t_A 174 GILKTARL-GY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAAF-----PLA--QNV- 242 (419)
T ss_dssp EEEEESSS-CC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEEC-----CCE--EEE-
T ss_pred EEEEecCC-CC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEEE-----eCe--EEE-
Confidence 99999742 44 57899999999988653 578999999973 78999999953 22211 100 000
Q ss_pred CCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 235 TSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 235 ~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
...|.+... ..+.. +++.. .+.++++|.++.++||+. +++||++++. +| ++||+|||.-||-.
T Consensus 243 ~~~g~~~~~--------~~Pa~~l~~~~-----~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG-~~~v~EiNpR~~~s 307 (419)
T 4e4t_A 243 HHNGILALT--------IVPAPAADTAR-----VEEAQQAAVRIADTLGYVGVLCVEFFVLE-DG-SFVANEMAPRPHNS 307 (419)
T ss_dssp EETTEEEEE--------EESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TC-CEEEEEEESSCCGG
T ss_pred eeCCeEEEE--------EcCCCCCCHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CC-CEEEEEEeCCCCCC
Confidence 011222110 01222 22221 356789999999999996 7789999985 35 69999999999965
Q ss_pred C
Q 019600 313 K 313 (338)
Q Consensus 313 g 313 (338)
+
T Consensus 308 g 308 (419)
T 4e4t_A 308 G 308 (419)
T ss_dssp G
T ss_pred C
Confidence 4
No 31
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.72 E-value=2e-16 Score=154.17 Aligned_cols=233 Identities=18% Similarity=0.179 Sum_probs=149.3
Q ss_pred chHHHhhhhhcceEEEEeeCCCCC---------------C---------cCCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPL---------------S---------DQGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l---------------~---------~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v 101 (338)
..+++++|+++|++++.+|...+. . ....+|+|+.-..+ .....+.+..++ -|+
T Consensus 19 ~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~-~~~~~~a~~~~~-~gl 96 (403)
T 4dim_A 19 QLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLD-TGIVSLARICDK-ENL 96 (403)
T ss_dssp GHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCS-TTHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcc-hhHHHHHHHHHH-cCc
Confidence 456899999999999999863211 0 12257888753222 222233333222 255
Q ss_pred eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEE
Q 019600 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (338)
Q Consensus 102 ~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 181 (338)
+-+++++++.+.||..+.++|+++ +|++|++..+. +.+++.+. ...++||+|+||..+. +|.+|.+
T Consensus 97 -~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~g~---gg~Gv~~ 162 (403)
T 4dim_A 97 -VGLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKNA--LENLKLPVIVKATDLQ---GSKGIYI 162 (403)
T ss_dssp -SSCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHHH--HHTSCSSEEEECSCC--------CEE
T ss_pred -CCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHH--HhcCCCCEEEEECCCC---CCCCEEE
Confidence 468899999999999999999976 89999998774 22223222 2468999999998853 5789999
Q ss_pred EeChhhHhcc---------CCCeEEEecccCCCcEEEE--EEECCEEEEEEEecCCCCCcccccCCCceeeecCcccccc
Q 019600 182 AYDQYSLKKL---------EPPLVLQEFVNHGGVLFKV--YIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 250 (338)
Q Consensus 182 v~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV--~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~ 250 (338)
+.+.++|.+. +.++++||||+ |..|-| ++.++++.+..... +.... +.+. .. .+.
T Consensus 163 v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~e~sv~~~~~~g~~~~~~~~~--~~~~~------~~~~---~~-~~~ 228 (403)
T 4dim_A 163 AKKEEEAIDGFNETMNLTKRDYCIVEEFIE--GYEFGAQAFVYKNDVLFVMPHG--DETYM------SHTA---VP-VGH 228 (403)
T ss_dssp ESSHHHHHHHHHHHHHHCSSSCCEEEECCC--SEEEEEEEEEETTEEEEEEEEE--EEEEE------SSSE---EE-EEE
T ss_pred ECCHHHHHHHHHHHHhcCcCCcEEEEEccC--CcEEEEEEEEECCEEEEEEEec--ceecc------CCCC---cc-eeE
Confidence 9999988652 46899999996 666654 55677776542111 00000 0000 00 000
Q ss_pred cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEeccCCCCCCCcccc
Q 019600 251 SADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 317 (338)
Q Consensus 251 ~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~--l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 317 (338)
..+..+++.. .+.+.++|.++.++||+. .+++|++.++ | ++|++|||.-||-.+++..
T Consensus 229 -~~p~~l~~~~-----~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~--~-~~~~iEiN~R~~~~~~~~~ 288 (403)
T 4dim_A 229 -YVPLDVKDDI-----IEKTKTEVKKAIKALGLNNCAVNVDMILKD--N-EVYIIELTGRVGANCLPEL 288 (403)
T ss_dssp -EESCCSCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEET--T-EEEEEEEESSCCSTTHHHH
T ss_pred -EeCCCCCHHH-----HHHHHHHHHHHHHHcCCCCCcEEEEEEEEC--C-cEEEEEEcCCCCCCcHHHH
Confidence 0122222211 356789999999999997 5789999973 4 6999999999998766543
No 32
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.72 E-value=2.9e-16 Score=151.59 Aligned_cols=227 Identities=11% Similarity=0.102 Sum_probs=150.5
Q ss_pred chHHHhhhhhcceEEEEeeCCCCC--CcC------------------CCccEEEEccCchhHHHHHHHHHHhCCCceeeC
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPL--SDQ------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l--~~q------------------g~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViD 105 (338)
...+..+++++|++++.+|++..- ... ..+|+|+.-.... ....++.+.+. | ++.+
T Consensus 11 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~~~~~l~~~--g-~~g~ 86 (369)
T 3aw8_A 11 GRMLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENV-PVEAARRLEGR--L-PLYP 86 (369)
T ss_dssp HHHHHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTC-CHHHHHHHHHH--S-CBSS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCc-CHHHHHHHHHc--C-CcCC
Confidence 445777889999999999876321 110 2467777544332 22333333333 4 7889
Q ss_pred hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeCh
Q 019600 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (338)
Q Consensus 106 p~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 185 (338)
++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+. ...++||+|+||..++ -+|.++.++.++
T Consensus 87 ~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~~~--~~g~Gv~~v~~~ 154 (369)
T 3aw8_A 87 PAKALEVAQDRLREKTFFQGL-------GVPTPPFHPVD-GPEDLEEG--LKRVGLPALLKTRRGG--YDGKGQALVRTE 154 (369)
T ss_dssp CHHHHHHHTCHHHHHHHHHHH-------TCCCCCEEEES-SHHHHHHH--HTTTCSSEEEEECCC--------EEEECSH
T ss_pred CHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeeC-CHHHHHHH--HHHcCCCEEEEEcCCC--CCcceEEEECCH
Confidence 999999999999999999976 89999999885 22223221 3468999999998854 136789999999
Q ss_pred hhHhcc-----CCCeEEEecccCCCcEEEEEEECC---EEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCC-
Q 019600 186 YSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD- 256 (338)
Q Consensus 186 ~~L~~l-----~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~- 256 (338)
++|.+. ..++++||||+. |+++.|.++++ ++.+..+. ..+. ..++++.+ ..+..
T Consensus 155 ~el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~-------~~~~-~~~~~~~~--------~~p~~~ 217 (369)
T 3aw8_A 155 EEALEALKALGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFYPLV-------ENRH-WGGILRLS--------LAPAPG 217 (369)
T ss_dssp HHHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEECTTSCEEECCCE-------EEEE-ETTEEEEE--------EESCTT
T ss_pred HHHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEECCe-------eeee-eCCEEEEE--------ECCCCC
Confidence 887653 468999999963 89999999974 34322100 0000 11222210 01121
Q ss_pred CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 257 LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 257 ~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
+++.. .+.++++|.++.++||+. ++++|++.+. | +++++|||.-||..+
T Consensus 218 l~~~~-----~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~ 267 (369)
T 3aw8_A 218 ASEAL-----QKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNSG 267 (369)
T ss_dssp CCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGG
T ss_pred CCHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCcc
Confidence 22211 346799999999999997 7789999975 4 699999999998754
No 33
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.72 E-value=9.8e-17 Score=157.64 Aligned_cols=244 Identities=14% Similarity=0.126 Sum_probs=156.3
Q ss_pred EEEEEEecccccccccchHHHhhhhhcceEEEEeeCCC--CCCcCC-CccEEEEccCchhHH------------------
Q 019600 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNR--PLSDQG-PFDIVLHKLTGKEWR------------------ 88 (338)
Q Consensus 30 ~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~--~l~~qg-~~DvilhK~~~~~~~------------------ 88 (338)
.+||..-.- .....++.+|+++|++++.+| .. |..... .+..+.....+....
T Consensus 25 ~~I~ilGgG-----~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e~~~ 98 (403)
T 3k5i_A 25 RKVGVLGGG-----QLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIEHVD 98 (403)
T ss_dssp CEEEEECCS-----HHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSSCSC
T ss_pred CEEEEECCC-----HHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCCCCC
Confidence 455555543 355678999999999999999 43 111111 112222222222111
Q ss_pred HHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEec-CCCChhHHHHhcCCCCcEEEee
Q 019600 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKP 167 (338)
Q Consensus 89 ~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~-~~~~~~~~l~~~~l~fP~VvKp 167 (338)
..+.+..++ ++++..++++++.+.||..+.+.|+++ |||+|++..+.. +.+++.+. ...++||+|+||
T Consensus 99 ~~~l~~l~~--g~~v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~--~~~~g~P~VvKp 167 (403)
T 3k5i_A 99 TYALEEVAS--EVKIEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKV--GEQLGYPLMLKS 167 (403)
T ss_dssp HHHHHHHTT--TSEESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHH--HHHHCSSEEEEE
T ss_pred HHHHHHHHc--CCccCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHH--HHHhCCCEEEEe
Confidence 111122323 788999999999999999999999865 899999998852 22223222 235789999999
Q ss_pred CCCCCCCcceeeEEEeChhhHhcc-----CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCCcccccCCCceeee
Q 019600 168 LVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRF 242 (338)
Q Consensus 168 ~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~g~~~KV~VIGd~v~~~~R~Slp~~~~~~~~~~~g~~~~ 242 (338)
..++ + +|.++.++.++++|... +.++++||||+ .|+++.|.++++.--+. ..|-. +.....+.+..
T Consensus 168 ~~gg-~-~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~~---~~p~~---~~~~~~g~~~~ 238 (403)
T 3k5i_A 168 KTMA-Y-DGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEVL---SYPTV---ETVQEDSICKL 238 (403)
T ss_dssp SSSC-C-TTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCEE---ECCCE---EEEEETTEEEE
T ss_pred CCCC-c-CCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCEE---EeCCe---eeEEeCCEEEE
Confidence 8742 2 47799999999887653 57899999996 37999999997621110 11110 00001122211
Q ss_pred cCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 243 PRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 243 ~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
. ..+.. +++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.|.
T Consensus 239 ~--------~~Pa~~l~~~~-----~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg-~~~v~EiNpR~~~sg~ 297 (403)
T 3k5i_A 239 V--------YAPARNVSDAI-----NQKAQELARKAVAAFDGKGVFGVEMFLLE-DD-SIMLCEIASRIHNSGH 297 (403)
T ss_dssp E--------EESCSSCCHHH-----HHHHHHHHHHHHHTSCCSEEEEEEEEEET-TS-CEEEEEEESSCCGGGT
T ss_pred E--------EeCCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-cEEEEEeecCCCCCCc
Confidence 0 01222 22221 356789999999999996 7789999985 35 6999999999997643
No 34
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.70 E-value=3.4e-16 Score=154.35 Aligned_cols=231 Identities=15% Similarity=0.185 Sum_probs=147.7
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCC--------------Cc---------CCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPL--------------SD---------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l--------------~~---------qg~~DvilhK~~~~~~~~~l~~~~~~~p~v 101 (338)
....+.++++++|++++.+|.+..- .+ ...+|+|+.-.-.. ....+..+.+ -|+
T Consensus 30 ~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~-~~~~~~~l~~--~gi 106 (433)
T 2dwc_A 30 LGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAI-NLDALFEFEK--DGY 106 (433)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccC-CHHHHHHHHh--cCC
Confidence 3456888999999999999976311 00 12578887655321 1222222222 367
Q ss_pred eeeChHHHHHHhccHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeE
Q 019600 102 TVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (338)
Q Consensus 102 ~ViDp~~ai~~l~dR~~~~~~L-~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (338)
++.+++++++.+.||..+.+.| +++ +||+|++..+. +.+++.+.. ..++||+|+||..+ + +|.++.
T Consensus 107 ~~~~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvKp~~g--~-gg~Gv~ 173 (433)
T 2dwc_A 107 FVVPNARATWIAMHRERLRETLVKEA-------KVPTSRYMYAT-TLDELYEAC--EKIGYPCHTKAIMS--S-SGKGSY 173 (433)
T ss_dssp CBSSCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEES-SHHHHHHHH--HHHCSSEEEEECCC---------E
T ss_pred eeCCCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeC-CHHHHHHHH--HhcCCCEEEEECCC--c-CCCCeE
Confidence 7789999999999999999998 654 89999999885 222233322 34789999999863 3 578999
Q ss_pred EEeChhhHhcc-----------CCCeEEEecccCCCcEEEEEEEC-----CEEEEEEEecCCCCCcccccCCCceeeecC
Q 019600 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVG-----EAIKVVRRFSLPDVTKQDLSTSAGVFRFPR 244 (338)
Q Consensus 181 iv~~~~~L~~l-----------~~p~vvQeFI~h~g~~~KV~VIG-----d~v~~~~R~Slp~~~~~~~~~~~g~~~~~~ 244 (338)
++.++++|... +.++++||||+. |.++.|.+++ +++....-....+.. ..+.+.-
T Consensus 174 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~------~~~~~~~-- 244 (433)
T 2dwc_A 174 FVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFPKPVGHYQ------IDGDYHA-- 244 (433)
T ss_dssp EECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEECCEEEEE------SSSSEEE--
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEecccceEE------EcCEEEE--
Confidence 99999887642 368999999974 8999998874 332111111110000 0111110
Q ss_pred cccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 245 VSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 245 ~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
+ -.+..+++.. .+.++++|.++.++||+ .++++|++++.+ ++||+|||.-||..+.
T Consensus 245 -~-----~~p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 245 -S-----WQPAEISEKA-----EREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDTGM 301 (433)
T ss_dssp -E-----EESCCCCHHH-----HHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred -E-----EcCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCCcc
Confidence 0 0122222211 34679999999999999 677899999752 5999999999996644
No 35
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.69 E-value=4.3e-16 Score=151.08 Aligned_cols=229 Identities=13% Similarity=0.199 Sum_probs=149.2
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCc-----------------------CCCccEEEEccCchhHHHHHHHHHHhCCCc
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~-----------------------qg~~DvilhK~~~~~~~~~l~~~~~~~p~v 101 (338)
....+.++++++|++++.+|.+..-.. +..+|+|+.-.-. ...+.+..+ ++ -|+
T Consensus 22 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~-~~~~~~~~l-~~-~gi 98 (391)
T 1kjq_A 22 LGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEA-IATDMLIQL-EE-EGL 98 (391)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSC-SCHHHHHHH-HH-TTC
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCc-CCHHHHHHH-Hh-CCC
Confidence 346688899999999999998531110 1146777653321 111222222 22 477
Q ss_pred eeeChHHHHHHhccHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeE
Q 019600 102 TVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (338)
Q Consensus 102 ~ViDp~~ai~~l~dR~~~~~~L-~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (338)
++.+++++++.+.||..+.+.| +++ +||+|++..+. +.+++.+.. ..++||+|+||..+ + +|.++.
T Consensus 99 ~~~~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvKp~~g--~-gg~Gv~ 165 (391)
T 1kjq_A 99 NVVPCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFAD-SESLFREAV--ADIGYPCIVKPVMS--S-SGKGQT 165 (391)
T ss_dssp EESSCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEES-SHHHHHHHH--HHHCSSEEEEESCC------CCCE
T ss_pred CcCCCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeC-CHHHHHHHH--HhcCCCEEEEeCCC--C-CCCCeE
Confidence 7889999999999999999998 654 89999999885 222233322 34789999999864 3 578999
Q ss_pred EEeChhhHhcc-----------CCCeEEEecccCCCcEEEEEEECC--EEEEEEEecCCCCCcccccCCCceeeecCccc
Q 019600 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC 247 (338)
Q Consensus 181 iv~~~~~L~~l-----------~~p~vvQeFI~h~g~~~KV~VIGd--~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~ 247 (338)
++.+.++|... +.++++||||+. |.++.|.++++ .+... ....+.. ..+.+. ...
T Consensus 166 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~~--~~~~~~~------~~~~~~--~~~- 233 (391)
T 1kjq_A 166 FIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHFC--APVGHRQ------EDGDYR--ESW- 233 (391)
T ss_dssp EECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEEC--CCEEEEE------ETTEEE--EEE-
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEEc--cCcceEE------ECCEEE--EEE-
Confidence 99999887541 468999999974 89999988843 32211 0000000 001111 000
Q ss_pred ccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 248 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
.+..+++.. .+.+.++|.++.++||+ .++++|++++.+ ++||+|||.-||..+.
T Consensus 234 -----~p~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 234 -----QPQQMSPLA-----LERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp -----ECCCCCHHH-----HHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred -----eCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCCcc
Confidence 112222211 34678999999999999 677899999752 5999999999996544
No 36
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.69 E-value=1.3e-15 Score=146.79 Aligned_cols=207 Identities=22% Similarity=0.331 Sum_probs=140.0
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcC----------------------CCccEEEEccCchhHHHHHHHHHHhCCCcee
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPLSDQ----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l~~q----------------------g~~DvilhK~~~~~~~~~l~~~~~~~p~v~V 103 (338)
...+..+|+++|++++.+|.+..-... ..+|+|+.-...... ..+.....+..++++
T Consensus 13 g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (363)
T 4ffl_A 13 GFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLAC-IEFLNSIKEKFSCPV 91 (363)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHH-HHHHHHHGGGCSSCB
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhH-HHHHHHHHHHCCCcc
Confidence 345788999999999999976522110 135666654433222 223333445567888
Q ss_pred eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEe
Q 019600 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (338)
Q Consensus 104 iDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 183 (338)
..++++++.+.||..+.+.|+++ +||+|.+ ..++||+|+||..+. +|.+|.++.
T Consensus 92 g~~~~a~~~~~dK~~~k~~l~~~-------gip~~~~----------------~~ig~P~vvKp~~g~---g~~gv~~v~ 145 (363)
T 4ffl_A 92 LFDFEAYRISRDKKKSKDYFKSI-------GVPTPQD----------------RPSKPPYFVKPPCES---SSVGARIIY 145 (363)
T ss_dssp CCCHHHHHHHTSHHHHHHHHHHT-------TCCCCCB----------------SCSSSCEEEECSSCC---TTTTCEEEC
T ss_pred CCCHHHHHHhhCHHHHHHHHHhc-------CCCCCCc----------------eecCCCEEEEECCCC---CCcCeEEec
Confidence 89999999999999999999976 7888864 137899999998743 578999999
Q ss_pred ChhhHhccCCCeEEEecccCCCcEEEEEEECCE--EEEE--EEecCCCCCcccccCCCceeeecCcccccccCCCCCCCc
Q 019600 184 DQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEA--IKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 259 (338)
Q Consensus 184 ~~~~L~~l~~p~vvQeFI~h~g~~~KV~VIGd~--v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 259 (338)
+.+++......+++|||| .|+.+-|.+++|. ..+. .+...++ .... .
T Consensus 146 ~~~~~~~~~~~~~~ee~i--~g~e~sv~~~~d~~~~~~~~~~~~~~~~----------------~~~~-------~---- 196 (363)
T 4ffl_A 146 DDKDLEGLEPDTLVEEYV--EGEVVSLEVVGDGSHFAVVKETLVHIDE----------------TYDC-------H---- 196 (363)
T ss_dssp ------CCCTTCEEEECC--CSEEEEEEEEEESSCEEECCCEEEEECT----------------TSCE-------E----
T ss_pred cHHHhhhhccchhhhhhc--cCcEEEEEEEEECCeEEEEEEEEeccCC----------------cccc-------e----
Confidence 999999999999999999 4899998888552 2211 1111000 0000 0
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccC-CCCC
Q 019600 260 CVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINY-FPGY 311 (338)
Q Consensus 260 ~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~-fPg~ 311 (338)
...+.+..+.++++|.++.++||+. ++++|+++++ + .+||+|||. |||.
T Consensus 197 ~~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~--~-~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 197 MVTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGP--K-GLRVIEIDARFPSQ 247 (363)
T ss_dssp EEEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEET--T-EEEEEEEECSCCSS
T ss_pred eecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeC--C-eEEEEEEeCCCCCC
Confidence 0011122466899999999999987 6679999985 2 599999999 7874
No 37
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.69 E-value=1.7e-15 Score=146.91 Aligned_cols=225 Identities=9% Similarity=0.036 Sum_probs=152.7
Q ss_pred cchHHHhhhhhcceEEEEeeCCCC--CCcCC-CccEEEEccCchhHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRP--LSDQG-PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~--l~~qg-~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~ 121 (338)
..+.+..+|+++|+++ +|++.. -.-.+ ..|+|..-...- ....++...+. + .|..++++++.+.||..+-+
T Consensus 12 lg~m~~~aa~~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~v-~~~~l~~l~~~--~-~v~p~~~a~~~~~DK~~~k~ 85 (355)
T 3eth_A 12 LGRMLRQAGEPLGIAV--WPVGLDAEPAAVPFQQSVITAEIERW-PETALTRQLAR--H-PAFVNRDVFPIIADRLTQKQ 85 (355)
T ss_dssp HHHHHHHHHGGGTCEE--EEECTTCCGGGCCCTTSEEEESCSCC-CCCHHHHHHHT--C-TTBTTTTHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHCCCEE--ECCCCCCCceEEcccCCEEEECcCCc-CHHHHHHHHhc--C-CcCCCHHHHHHhcCHHHHHH
Confidence 3456888999999999 565542 11111 568887655431 11233333333 4 78999999999999999999
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeC--hhhHhc--cCCCeEE
Q 019600 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD--QYSLKK--LEPPLVL 197 (338)
Q Consensus 122 ~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~--~~~L~~--l~~p~vv 197 (338)
.|+++ +||+|++..++ +.+++.+.. ..++||+|+||..+ |+ +++++.++.+ +++|.+ ++ ++++
T Consensus 86 ~l~~~-------GIptp~~~~v~-~~~e~~~~~--~~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~viv 152 (355)
T 3eth_A 86 LFDKL-------HLPTAPWQLLA-ERSEWPAVF--DRLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIV 152 (355)
T ss_dssp HHHHT-------TCCBCCEEEEC-CGGGHHHHH--HHHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEE
T ss_pred HHHHC-------ccCCCCEEEEC-CHHHHHHHH--HHcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEE
Confidence 99875 89999999885 333344332 34789999999874 45 5799999999 888765 24 7999
Q ss_pred EecccCCCcEEEEEEECC---EEEEEEEecCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHH
Q 019600 198 QEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLA 274 (338)
Q Consensus 198 QeFI~h~g~~~KV~VIGd---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA 274 (338)
|+||+ .++.+-|.++++ .+.+. |-. +.....|.+... ..+..+++.. .+.++++|
T Consensus 153 Ee~I~-~~~Eisv~v~~~~~G~~~~~-----p~~---e~~~~~g~~~~~--------~~pa~l~~~~-----~~~~~~~a 210 (355)
T 3eth_A 153 EQGIN-FSGEVSLVGARGFDGSTVFY-----PLT---HNLHQDGILRTS--------VAFPQANAQQ-----QARAEEML 210 (355)
T ss_dssp EECCC-CSEEEEEEEEECTTSCEEEC-----CCE---EEEEETTEEEEE--------EECSSCCHHH-----HHHHHHHH
T ss_pred EEccC-CCcEEEEEEEEcCCCCEEEE-----CCE---EEEeeCCeEEEE--------ECCCCCCHHH-----HHHHHHHH
Confidence 99997 478999999853 23221 110 000012232211 0122232222 35689999
Q ss_pred HHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 275 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 275 ~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
.++.++||.. +++||+++++ + ++||+|||.-|+-.|
T Consensus 211 ~~i~~aLg~~G~~~vEf~~~~--~-~~~v~EinpR~~~sg 247 (355)
T 3eth_A 211 SAIMQELGYVGVMAMECFVTP--Q-GLLINELAPRVHNSG 247 (355)
T ss_dssp HHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGG
T ss_pred HHHHHHCCCeeEEEEEEEEEC--C-cEEEEEeeCCCCCCc
Confidence 9999999985 7789999974 3 699999999999654
No 38
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.67 E-value=1.9e-16 Score=152.43 Aligned_cols=222 Identities=15% Similarity=0.156 Sum_probs=129.6
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC--cC--------------CCccEEEEccCchhHHHHHHHHHHhCCCceeeChHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLS--DQ--------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY 108 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~--~q--------------g~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~ 108 (338)
....+.++++++|++++.+|.+.... .. ..+|+|+....+.. ...+ +..+. ++.++++
T Consensus 12 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~-~~~~-~~l~~----~~g~~~~ 85 (365)
T 2z04_A 12 LGWMTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIK-DEVL-EKCES----KLIPNPQ 85 (365)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCC-HHHH-HHHTT----TBSSCTH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCc-HHHH-HHHhh----hcCCCHH
Confidence 34568889999999999999864221 10 24688887653321 2222 22222 6789999
Q ss_pred HHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhH
Q 019600 109 AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (338)
Q Consensus 109 ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 188 (338)
+++.+.||..+.+.|+++ +||+|++..++ .+++.+. ...++||+|+||..++ -+|.++.++.+.++|
T Consensus 86 ~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~--~~~~~~~--~~~~~~P~vvKp~~~~--~~g~Gv~~v~~~~el 152 (365)
T 2z04_A 86 ALYVKKSRIREKLFLKKH-------GFPVPEFLVIK--RDEIIDA--LKSFKLPVVIKAEKLG--YDGKGQYRIKKLEDA 152 (365)
T ss_dssp HHHHHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC--------------------
T ss_pred HHHHhhCHHHHHHHHHHc-------CCCCCCEEEEc--HHHHHHH--HHhcCCCEEEEEcCCC--cCCCCeEEECCHHHH
Confidence 999999999999999865 89999999875 2233322 2357899999998854 125688999999887
Q ss_pred hcc------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCCcccccCCCceeeecCcccccccCCCCCCC
Q 019600 189 KKL------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 258 (338)
Q Consensus 189 ~~l------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~ 258 (338)
.+. +.++++||||+. |+++.|.++++ ++.+. .... +. ..+.++.+ . .+..
T Consensus 153 ~~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~~~--------~~-~~~~~~~~--~------~p~~-- 212 (365)
T 2z04_A 153 NQVVKNHDKEESFIIEEFVKF-EAEISCIGVRDREGKTYFYPQPFN--------KH-EEGILIYN--Y------VPYA-- 212 (365)
T ss_dssp ------------CEEEECCCC-SEEEEEEEEECTTCCEEECCEEEE--------EE-ETTEEEEE--E------EEEE--
T ss_pred HHHHHHhccCCCEEEEccCCC-CEEEEEEEEECCCCCEEEECCEEE--------EE-eCCEeEEE--E------CCHh--
Confidence 653 468999999974 89999999953 44322 1100 00 01222210 0 0111
Q ss_pred ccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 259 PCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 259 ~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
+ .+.++++|.++.++||+. ++++|++++. +| +++++|||.-||..+.
T Consensus 213 -----~--~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g-~~~~iEiN~R~~~~~~ 260 (365)
T 2z04_A 213 -----K--LKEAEEITKRLMELLDIVGVFTVEFFLLK-DG-RVLINEFAPRVHNTGH 260 (365)
T ss_dssp -----C--CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGGT
T ss_pred -----H--HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CC-cEEEEEeccCcCCCce
Confidence 1 356899999999999996 7789999975 35 6999999999987543
No 39
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.66 E-value=1.4e-15 Score=144.06 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=122.7
Q ss_pred CCccEEEEccCchhH-HHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019600 73 GPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (338)
Q Consensus 73 g~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~ 151 (338)
.++|+++.-..++.. .+.+.+... .+|..+.+++++++.+.||..+.+.|+ . +|++|++.+
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~-~~g~~~g~~~~~~~~~~dK~~~~~~l~-------~-Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAE-KYCENLGSSSRAIAVTSDKWELYKKLR-------G-EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHH-TTSEESSCCHHHHHHHTSHHHHHHHHT-------T-TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHH-hcCCccCCCHHHHHHhcCHHHHHHHHH-------h-CCCCCCEec---------
Confidence 478887766443222 233333333 357889999999999999999999987 4 799999873
Q ss_pred HHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECC-EEEEEEEecCCCCCc
Q 019600 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE-AIKVVRRFSLPDVTK 230 (338)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~~p~vvQeFI~h~g~~~KV~VIGd-~v~~~~R~Slp~~~~ 230 (338)
..++||+|+||..++ +|.++.++.+ .+.++++||||+ |+++.|.++++ .+....+.. .+.
T Consensus 130 -----~~~~~P~vvKP~~g~---gs~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~--~~~- 190 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTAC---AGEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNE--QII- 190 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEE--EEE-
T ss_pred -----ccCCCCEEEEeCCCC---CCCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEee--Eec-
Confidence 247899999999854 4678888877 677999999996 99999999954 343332110 000
Q ss_pred ccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CC-cEeEEEEEEeCCCCCeEEEEeccCC
Q 019600 231 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GL-RLFNLDIIREHGTRDQFYVIDINYF 308 (338)
Q Consensus 231 ~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L-Gl-~l~GvDvi~~~~~g~~~~ViDVN~f 308 (338)
+ . +.+. ++ ..+..+++.. .+.++++|.++.++| |+ .++|+|++++ | ++|++|||.-
T Consensus 191 -~---~---~~~~----g~--~~p~~l~~~~-----~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiNpR 248 (305)
T 3df7_A 191 -N---N---FRYA----GA--VVPARISDEV-----KREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEINAR 248 (305)
T ss_dssp -E---T---TEEE----EE--EESCCCCHHH-----HHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEESS
T ss_pred -c---C---ceec----cc--cccCCCCHHH-----HHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEcCC
Confidence 0 0 1111 00 1122222211 357899999999999 96 4678999984 3 5899999999
Q ss_pred CCCC
Q 019600 309 PGYG 312 (338)
Q Consensus 309 Pg~~ 312 (338)
||..
T Consensus 249 ~~~~ 252 (305)
T 3df7_A 249 LTTP 252 (305)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 9974
No 40
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.64 E-value=6e-15 Score=139.33 Aligned_cols=226 Identities=16% Similarity=0.175 Sum_probs=136.7
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCC--------Cc---CCC-c---------cEEEEccCchhH-HHHHHHHHHhCCCce
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPL--------SD---QGP-F---------DIVLHKLTGKEW-RQILEEYRQTHPEVT 102 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l--------~~---qg~-~---------DvilhK~~~~~~-~~~l~~~~~~~p~v~ 102 (338)
....+.++++++|++++.+|.+... .+ ..+ + |+|+.. .+.. ...++.. +..|++
T Consensus 12 ~~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~~~--~e~~~~~~~~~l--e~~g~~ 87 (334)
T 2r85_A 12 SALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPT--GSFVAHLGIELV--ENMKVP 87 (334)
T ss_dssp THHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEECCC--TTHHHHHCHHHH--HTCCSC
T ss_pred hHHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEEEC--cchhhhhHHHHH--HHcCCC
Confidence 4556889999999999999987421 01 112 3 555422 2111 1112222 346888
Q ss_pred eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEE
Q 019600 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (338)
Q Consensus 103 ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv 182 (338)
++++++++..+.||..+.+.|+++ +|++|++ +. +. ..++||+|+||..++ +|.++.++
T Consensus 88 ~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~---------~~l~~P~vvKP~~g~---~s~Gv~~v 145 (334)
T 2r85_A 88 YFGNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DP---------DDIEKPVIVKPHGAK---GGKGYFLA 145 (334)
T ss_dssp BBSCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTCEEE
T ss_pred ccCCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-Ch---------HHcCCCEEEEeCCCC---CCCCEEEE
Confidence 999999999999999999999875 8999998 32 21 126799999999854 57789999
Q ss_pred eChhhHhcc----------C--CCeEEEecccCCCcEEEEEE----ECCEEEEE---EEecCC-C----CCcc-cccCCC
Q 019600 183 YDQYSLKKL----------E--PPLVLQEFVNHGGVLFKVYI----VGEAIKVV---RRFSLP-D----VTKQ-DLSTSA 237 (338)
Q Consensus 183 ~~~~~L~~l----------~--~p~vvQeFI~h~g~~~KV~V----IGd~v~~~---~R~Slp-~----~~~~-~~~~~~ 237 (338)
.++++|... + .++++||||+ |..+-+.+ +++++.+. .|.... + .... .+..+.
T Consensus 146 ~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 223 (334)
T 2r85_A 146 KDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDM 223 (334)
T ss_dssp SSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEeccCccccccccccccccc
Confidence 999887642 2 7899999995 77665322 22322111 111100 0 0000 000000
Q ss_pred ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC------CcEeEEEEEEeCCCCCeEEEEeccCCCCC
Q 019600 238 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG------LRLFNLDIIREHGTRDQFYVIDINYFPGY 311 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LG------l~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (338)
+.. + ...+.. +..+++. ..+.++++|.++.++|| ..++++|++++. +| ++||+|||.-||-
T Consensus 224 ~~~-~---~~~g~~--p~~l~~~-----~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN~R~g~ 290 (334)
T 2r85_A 224 DIT-Y---TVIGNI--PIVLRES-----LLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARIVA 290 (334)
T ss_dssp CCC-E---EEEEEE--ECCCCGG-----GHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSCCG
T ss_pred CCc-e---eeeCCC--CcccCHH-----HHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEeCCcCC
Confidence 000 0 000000 1222211 14678999999999994 557789999975 34 6899999999987
No 41
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.62 E-value=1.4e-14 Score=143.43 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=121.3
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
.|++++ .++++++.+.||..+.+.|+++ |||+|++. .+. +.+++.+. ...++||+|+||..++ +
T Consensus 102 ~g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~--~~~~g~PvvvKp~~g~---g 168 (446)
T 3ouz_A 102 HNIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKL--AKEIGYPVILKAAAGG---G 168 (446)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHH--HHHHCSSEEEEETTCC---T
T ss_pred CCCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHH--HHHhCCCEEEEECCCC---C
Confidence 478887 8899999999999999999975 89999986 443 22223322 2357899999998743 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEe-cCCCCCcccccCCC
Q 019600 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSA 237 (338)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~-~R~-Slp~~~~~~~~~~~ 237 (338)
|.+|.++.++++|.+. +.++++||||+ +++.+.|.|+++ ++... .|. +..
T Consensus 169 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~----------- 236 (446)
T 3ouz_A 169 GRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQ----------- 236 (446)
T ss_dssp TCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEE-----------
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeee-----------
Confidence 7899999999887652 67899999996 238999999865 23322 222 110
Q ss_pred ceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 238 GVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
..+... .. ..+. .+++.. .+.+.++|.++.++||+.- +++|++++. +| ++|++|||.-|+-.
T Consensus 237 ---~~~~~~--~~-~~p~~~l~~~~-----~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~~iEiNpR~~g~ 300 (446)
T 3ouz_A 237 ---RRHQKL--IE-ESPAILLDEKT-----RTRLHETAIKAAKAIGYEGAGTFEFLVDK-NL-DFYFIEMNTRLQVE 300 (446)
T ss_dssp ---ETTEEE--EE-EESCTTSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCTT
T ss_pred ---ecCceE--EE-ECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceEEEEEEeC-CC-CEEEEEeECCCCCc
Confidence 000000 00 0011 121111 3568899999999999975 459999986 34 69999999999753
No 42
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.60 E-value=2.9e-14 Score=141.75 Aligned_cols=220 Identities=10% Similarity=0.083 Sum_probs=135.9
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019600 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (338)
Q Consensus 74 ~~DvilhK~~~~~~-~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~ 151 (338)
..|+|+. ..+.. ...+.+..++ .|++++ .++++++.+.||..+.++|+++ +||+|++..+. +.+++.
T Consensus 83 ~id~vv~--g~E~~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~-~~~ea~ 151 (442)
T 3lp8_A 83 KIELVVI--GPETPLMNGLSDALTE-EGILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFV-DTNSAY 151 (442)
T ss_dssp TCCEEEE--CSHHHHHTTHHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEES-SHHHHH
T ss_pred CCCEEEE--CCcHHHHHHHHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEEC-CHHHHH
Confidence 4566664 22222 1223333333 488888 9999999999999999999976 89999999885 222333
Q ss_pred HHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEE--CCE
Q 019600 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEA 216 (338)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VI--Gd~ 216 (338)
+.+ ..++||+|+||..+ + +|.++.++.+.+++.+. ..++++||||+ |+++.|.++ |+.
T Consensus 152 ~~~--~~~g~PvVvKp~~~--~-gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~ 224 (442)
T 3lp8_A 152 KFI--DKHKLPLVVKADGL--A-QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGSN 224 (442)
T ss_dssp HHH--HHSCSSEEEEESSC--C-TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESSC
T ss_pred HHH--HHcCCcEEEeECCC--C-CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCCe
Confidence 322 34899999999863 3 67899999999887542 25899999996 899999888 444
Q ss_pred EEEE--EEecCCCCCcccccCCCceeeecCcccc---cccCCCCC-CCccccCCCChHHHHHH----HHHHHHHhCCcEe
Q 019600 217 IKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCA---AASADDAD-LDPCVAELPPRPLLERL----AKELRRQLGLRLF 286 (338)
Q Consensus 217 v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~s~~---~~~~~~~~-~~~~~~~~p~~~~~~~l----A~~l~~~LGl~l~ 286 (338)
+... .+.- .. .+++...... +.. .+.. +++.. .+.+.+. +.++.+++|+.+.
T Consensus 225 ~~~~~~~~~~-~~-----------~~~~~~g~~~gg~g~~-~P~~~l~~~~-----~~~i~~~i~~~a~~~~~a~g~~~~ 286 (442)
T 3lp8_A 225 PVILGVAQDY-KT-----------IGDNNKGPNTGGMGSY-SKPNIITQEM-----EHIIIQKIIYPTIKAMFNMNIQFR 286 (442)
T ss_dssp EEEEEEEEEC-CE-----------EEGGGEEEECSCSEEE-ECTTSSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCE
T ss_pred EEEeEEeEee-ee-----------cccCCCCCCCCCcEEE-eeCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCce
Confidence 4422 2211 10 1111100000 000 1111 21111 2334444 6777789999655
Q ss_pred E---EEEEEeCCCCCeEEEEeccCCCCCCCccc----chHHHHHHHHHHHHhh
Q 019600 287 N---LDIIREHGTRDQFYVIDINYFPGYGKMPE----YEHIFTDFLLSLTQSR 332 (338)
Q Consensus 287 G---vDvi~~~~~g~~~~ViDVN~fPg~~gv~~----~~~~l~~~l~~~i~~~ 332 (338)
| +|++++. +| ++|||+|.-||-...+. +...|.+.+.+.+..+
T Consensus 287 G~~~ve~~~~~-~g--~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~ 336 (442)
T 3lp8_A 287 GLLFAGIIIKK-NE--PKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGK 336 (442)
T ss_dssp EEEEEEEEEET-TE--EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTC
T ss_pred eEEEEEEEEeC-CC--eEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCC
Confidence 5 9999985 33 89999999999322211 1223566666666553
No 43
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.59 E-value=2.1e-14 Score=156.81 Aligned_cols=227 Identities=16% Similarity=0.257 Sum_probs=140.8
Q ss_pred ccchHHHhhhhhcceEEEEeeCCCCCCc--C----------------------CCccEEEEccCchhHHHHHHHHHHhCC
Q 019600 44 FLQPKLEGLARNKGILFVAIDQNRPLSD--Q----------------------GPFDIVLHKLTGKEWRQILEEYRQTHP 99 (338)
Q Consensus 44 ~~~~~l~~~~~~~gi~~~~id~~~~l~~--q----------------------g~~DvilhK~~~~~~~~~l~~~~~~~p 99 (338)
+.+..+.+++++.|++++.+|.+..... . ...|.|+.-....... .+.+..++ .
T Consensus 580 ~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~Vi~~~g~~~~~-~la~~Le~-~ 657 (1073)
T 1a9x_A 580 YCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPL-KLARALEA-A 657 (1073)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEEECSSSTHHHH-TTHHHHHH-T
T ss_pred hhHHHHHHHHHhcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceEEeecCCchHH-HHHHHHHH-C
Confidence 3444578899999999999997642211 0 1234444332222111 22222222 4
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCccee
Q 019600 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 100 ~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
|++++ ++++++..+.||..+.++|.++ +|++|++..+.+ .+++.+.. ..++||+|+||..+. +|.+
T Consensus 658 Gi~i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~s-~eea~~~~--~~ig~PvvVKP~~~~---gG~G 724 (1073)
T 1a9x_A 658 GVPVIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVTA-IEMAVEKA--KEIGYPLVVRASYVL---GGRA 724 (1073)
T ss_dssp TCCBCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECCS-HHHHHHHH--HHHCSSEEEEC----------C
T ss_pred CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEECC-HHHHHHHH--HHcCCCEEEEECCCC---CCCC
Confidence 78887 8899999999999999999976 899999998852 22233222 347999999998853 5789
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCCc-EEEEEEECC--EEEE--EEEecCC-CCCcccccCCCceeeec
Q 019600 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGV-LFKVYIVGE--AIKV--VRRFSLP-DVTKQDLSTSAGVFRFP 243 (338)
Q Consensus 179 m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~-~~KV~VIGd--~v~~--~~R~Slp-~~~~~~~~~~~g~~~~~ 243 (338)
|.++.++++|..+ +.|+++|+||+ |. .+-|-+++| .+.+ +.+.-.+ ++..++
T Consensus 725 v~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~--g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd----------- 791 (1073)
T 1a9x_A 725 MEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD--DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD----------- 791 (1073)
T ss_dssp EEEECSHHHHHHHHHHCC--------EEEBCCT--TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----------
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC--CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----------
Confidence 9999999988753 35899999996 55 888877744 3332 2222111 111110
Q ss_pred CcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 244 RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 244 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
... ......+++.. .+.++++|.++.++||+ .++++|+++++ | ++||||||.-||
T Consensus 792 ~~~----~~P~~~l~~~~-----~~~i~~~a~~i~~aLg~~G~~~vdf~v~~--~-~~~viEvNpR~~ 847 (1073)
T 1a9x_A 792 SAC----SLPAYTLSQEI-----QDVMRQQVQKLAFELQVRGLMNVQFAVKN--N-EVYLIEVNPRAA 847 (1073)
T ss_dssp CCE----EESCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECS--S-CEEEEEEECSCC
T ss_pred ceE----EecCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEEC--C-eEEEEEEECCCc
Confidence 000 00011222111 35689999999999999 78889999963 3 689999999998
No 44
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.59 E-value=4.4e-14 Score=154.31 Aligned_cols=228 Identities=16% Similarity=0.215 Sum_probs=151.0
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC-------c-----------------CCCccEEEEccCchhHH---HHHHH--HH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLS-------D-----------------QGPFDIVLHKLTGKEWR---QILEE--YR 95 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~-------~-----------------qg~~DvilhK~~~~~~~---~~l~~--~~ 95 (338)
+-..+++++++.|++++.+|.+.... + ...+|+|+.-...+... ..+.+ ..
T Consensus 29 sg~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~l 108 (1073)
T 1a9x_A 29 SGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVL 108 (1073)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHH
Confidence 34468899999999999999765321 0 12467777655432111 11221 22
Q ss_pred HhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCC
Q 019600 96 QTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (338)
Q Consensus 96 ~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (338)
+ .-|+.++ .++++++.+.||..+.++|.++ |||+|++..+++ .+++.+. ...++||+|+||..+.|
T Consensus 109 e-~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~-~~ea~~~--~~~ig~PvVvKp~~~~G-- 175 (1073)
T 1a9x_A 109 E-EFGVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHT-MEEALAV--AADVGFPCIIRPSFTMG-- 175 (1073)
T ss_dssp H-HHTCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESS-HHHHHHH--HHHHCSSEEEEETTCCT--
T ss_pred H-HcCCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHH--HHHcCCCEEEEECCCCC--
Confidence 2 2378888 8999999999999999999976 899999998852 2223322 23478999999998544
Q ss_pred cceeeEEEeChhhHhcc---------CCCeEEEecccCCC-cEEEEEEECCE---EEEE--EEecCCC-CCcccccCCCc
Q 019600 175 KSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVV--RRFSLPD-VTKQDLSTSAG 238 (338)
Q Consensus 175 ~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g-~~~KV~VIGd~---v~~~--~R~Slp~-~~~~~~~~~~g 238 (338)
|.++.++.++++|.+. ..++++||||+ | +.|.|-|++|. +..+ ..+--|. +..++
T Consensus 176 -g~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~--G~~E~~v~v~~d~~g~~v~~~~~e~~dp~~v~~g~------ 246 (1073)
T 1a9x_A 176 -GSGGGIAYNREEFEEICARGLDLSPTKELLIDESLI--GWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGD------ 246 (1073)
T ss_dssp -TTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCT--TSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGG------
T ss_pred -CCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccC--CCeEEEEEEEEeCCCCEEEEEEEecccCCccccCc------
Confidence 6789999999887653 34899999996 5 79999999753 3322 1111111 10000
Q ss_pred eeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 239 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~--l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
... ..+. .+++.. .+.++++|.++.++||+. .++||++++..+| +++|||||.-++
T Consensus 247 -----s~~-----~~Pa~~l~~~~-----~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 247 -----SIT-----VAPAQTLTDKE-----YQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp -----SCE-----EESCCSCCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred -----EEE-----EecCCCCCHHH-----HHHHHHHHHHHHHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 000 0011 121111 346899999999999997 8889999986445 699999995444
No 45
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.59 E-value=4.1e-14 Score=140.09 Aligned_cols=177 Identities=12% Similarity=0.210 Sum_probs=119.9
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
.|++++ .++++++.+.||..+.+.|+++ +||+|++. .+. +.+++.+.+ ..++||+|+||..+. +
T Consensus 97 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~g~---g 163 (451)
T 1ulz_A 97 AGITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKALA--REIGYPVLLKATAGG---G 163 (451)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHHH--HHHCSSEEEEECSSS---S
T ss_pred CCCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCCC---C
Confidence 478766 7799999999999999999975 89999986 443 222233322 247899999998854 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCCcccccCCCc
Q 019600 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAG 238 (338)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~-~R~Slp~~~~~~~~~~~g 238 (338)
|.++.++.++++|... +.++++||||+ +++++.|.++++ ++... .|... +.. ....
T Consensus 164 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~~--~~~----~~~~ 236 (451)
T 1ulz_A 164 GRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDCS--IQR----RNQK 236 (451)
T ss_dssp CCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEEEE--EEE----TTEE
T ss_pred CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc-CCeEEEEEEEEcCCCCEEEEeeeecc--ccc----cccc
Confidence 7899999999887642 46899999996 247999988864 34322 32210 000 0000
Q ss_pred eeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 239 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
.+. ..+. .+++.. .+.+.++|.++.++||+.- +++|++++. +| +++|+|||.-||-.
T Consensus 237 ~~~----------~~P~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 237 LVE----------IAPSLILTPEK-----REYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQVE 295 (451)
T ss_dssp EEE----------EESCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCCTT
T ss_pred cee----------ECCcccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCCcc
Confidence 000 0011 121111 3567899999999999984 569999975 35 69999999988754
No 46
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.59 E-value=3.6e-14 Score=134.35 Aligned_cols=169 Identities=20% Similarity=0.232 Sum_probs=103.2
Q ss_pred CCce-eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcce
Q 019600 99 PEVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 99 p~v~-ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
.|++ +.++++++..+.||..+.+.|+++ +|++|++.... +++.+.+....++||+|+||..+. +|.
T Consensus 97 ~g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~g~---g~~ 163 (331)
T 2pn1_A 97 IGVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYATM---ASFEEALAAGEVQLPVFVKPRNGS---ASI 163 (331)
T ss_dssp TTCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESSH---HHHHHHHHTTSSCSCEEEEESBC-------
T ss_pred CCcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEecH---HHhhhhhhcccCCCCEEEEeCCCC---CCC
Confidence 4775 468899999999999999999976 89999986421 122222222468999999998854 478
Q ss_pred eeEEEeChhhHhcc---CCCeEEEecccCCCcEEEEEEEC----CEEE-EEEEecCCCCCcccccCCCceeeecCccccc
Q 019600 178 ELSLAYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIVG----EAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA 249 (338)
Q Consensus 178 ~m~iv~~~~~L~~l---~~p~vvQeFI~h~g~~~KV~VIG----d~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~ 249 (338)
++.++.+.++|... ..++++||||+ |+.+.|.+++ +++. +..+.... . ..|.... +
T Consensus 164 gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~-~-------~~g~~~~---~--- 227 (331)
T 2pn1_A 164 EVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT-M-------RAGETDK---S--- 227 (331)
T ss_dssp -------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE-E-------ETTEEEE---E---
T ss_pred CeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE-e-------cCCceeE---e---
Confidence 89999999888764 46899999996 7999988875 3444 33332210 0 0011000 0
Q ss_pred ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccC-CCCCC
Q 019600 250 ASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINY-FPGYG 312 (338)
Q Consensus 250 ~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~-fPg~~ 312 (338)
. + +..+.+.++|.++.++||+ .++++|++.+ +| +++++|||. +||..
T Consensus 228 ----~----~-----~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~~ 276 (331)
T 2pn1_A 228 ----R----S-----VLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGGY 276 (331)
T ss_dssp ----E----E-----ECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTTH
T ss_pred ----E----E-----eccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCch
Confidence 0 0 0135679999999999999 5778999954 34 699999999 56643
No 47
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.58 E-value=5.5e-14 Score=139.12 Aligned_cols=176 Identities=11% Similarity=0.176 Sum_probs=119.6
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCh-hHHHHhcCCCCcEEEeeCCCCCCC
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSI-PDVVLKAGLTLPLVAKPLVADGSA 174 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~-~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (338)
.|++++ .++++++.+.||..+.+.|+++ +||+|++. .+. +.+++ .+.+ ..++||+|+||..+.
T Consensus 98 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~~g~PvvvKp~~g~--- 164 (449)
T 2w70_A 98 SGFIFIGPKAETIRLMGDKVSAIAAMKKA-------GVPCVPGSDGPLG-DDMDKNRAIA--KRIGYPVIIKASGGG--- 164 (449)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHH-------TCCBCSBCSSCCC-SCHHHHHHHH--HHHCSSEEEEETTCC---
T ss_pred cCCceECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccccC-CHHHHHHHHH--HHhCCcEEEEECCCC---
Confidence 478765 5799999999999999999976 89999986 553 22233 3322 247899999998854
Q ss_pred cceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEecCCCCCcccccCCC
Q 019600 175 KSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSA 237 (338)
Q Consensus 175 ~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~-~R~Slp~~~~~~~~~~~ 237 (338)
+|.++.++.+.++|... +.++++||||+ +++.+.|.++++ ++... .|... .. ....
T Consensus 165 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~~--~~----~~~~ 237 (449)
T 2w70_A 165 GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE-NPRHVEIQVLADGQGNAIYLAERDCS--MQ----RRHQ 237 (449)
T ss_dssp TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEE--EE----ETTE
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC-CCeEEEEEEEEcCCCCEEEEeceecc--cc----cCCc
Confidence 57889999999887642 56899999996 348899988853 34332 33110 00 0000
Q ss_pred ceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 238 GVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
..+. ..+. .+++.. .+.+.++|.++.++||+. ++++|++++. | +++|+|||.-|+-.
T Consensus 238 ~~~~----------~~p~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R~~~~ 296 (449)
T 2w70_A 238 KVVE----------EAPAPGITPEL-----RRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTRIQVE 296 (449)
T ss_dssp EEEE----------EESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECSCCTT
T ss_pred ceee----------eCCcccCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECCCCcc
Confidence 0000 0011 122111 356789999999999997 4569999985 4 69999999988743
No 48
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.58 E-value=2.7e-14 Score=141.45 Aligned_cols=236 Identities=13% Similarity=0.045 Sum_probs=140.9
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHH
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~ 124 (338)
.+.+.++|++.+++++.+.++. .....+.+..++ -|++++ .++++++.+.||..+.++|+
T Consensus 56 ~~~l~~~a~~~~id~vv~g~e~------------------~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~ 116 (431)
T 3mjf_A 56 IAGLLAFAQSHDIGLTIVGPEA------------------PLVIGVVDAFRA-AGLAIFGPTQAAAQLEGSKAFTKDFLA 116 (431)
T ss_dssp HHHHHHHHHHTTEEEEEECSHH------------------HHHTTHHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCEEEECCch------------------HHHHHHHHHHHh-cCCCeeCCCHHHHHHhhCHHHHHHHHH
Confidence 3456667777776665543221 111222233322 478887 99999999999999999999
Q ss_pred hccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc-------------
Q 019600 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------- 191 (338)
Q Consensus 125 ~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------- 191 (338)
++ +||+|++..++ +.+++.+.+ ..++||+|+||..+. +|.++.++.+.+++.+.
T Consensus 117 ~~-------GIptp~~~~~~-~~~ea~~~~--~~~g~PvVvKp~~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~ 183 (431)
T 3mjf_A 117 RH-------NIPSAEYQNFT-DVEAALAYV--RQKGAPIVIKADGLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDA 183 (431)
T ss_dssp HT-------TCSBCCEEEES-CHHHHHHHH--HHHCSSEEEEESSSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCC
T ss_pred Hc-------CCCCCCeEeeC-CHHHHHHHH--HHcCCeEEEEECCCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCC
Confidence 75 89999999885 322333322 247899999998643 57899999999887542
Q ss_pred CCCeEEEecccCCCcEEEEEEECC--EEEEEEEecCCCCCcccccCCCceeeecCccccccc--CCCCC-CCccccCCCC
Q 019600 192 EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDAD-LDPCVAELPP 266 (338)
Q Consensus 192 ~~p~vvQeFI~h~g~~~KV~VIGd--~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~-~~~~~~~~p~ 266 (338)
..++++||||+ |.++.|.++.| ++.... -. .+ ....++++.....+.. ..+.. +++..
T Consensus 184 ~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~-----~~--~~---~~~~~~~~~g~~~gg~g~~~P~~~l~~~~----- 246 (431)
T 3mjf_A 184 GHRIVVEEFLD--GEEASFIVMVDGENVLPMA-----TS--QD---HKRVGDGDTGPNTGGMGAYSPAPVVTDDV----- 246 (431)
T ss_dssp CCCEEEEECCC--SEEEEEEEEEESSCEEECC-----CB--EE---CCEEETTTEEEECSCSEEEESCTTSCHHH-----
T ss_pred CCeEEEEEeeC--CcEEEEEEEEcCCEEEEEE-----ee--Ee---ceecccCCCCCCCCCceEEeeCCCCCHHH-----
Confidence 35899999996 89999988843 444220 00 00 0001111100000000 01111 11111
Q ss_pred hHHHHHH----HHHHHHHhCCcEeE---EEEEEeCCCCCeEEEEeccCCCCCCCccc----chHHHHHHHHHHHHhh
Q 019600 267 RPLLERL----AKELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGYGKMPE----YEHIFTDFLLSLTQSR 332 (338)
Q Consensus 267 ~~~~~~l----A~~l~~~LGl~l~G---vDvi~~~~~g~~~~ViDVN~fPg~~gv~~----~~~~l~~~l~~~i~~~ 332 (338)
.+.+.+. +.++.+++|+.+.| +|++++. +| +++|||+|.-||....+. ...-|.+.+.+.+..+
T Consensus 247 ~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G~ 321 (431)
T 3mjf_A 247 HQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGK 321 (431)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHHcCC
Confidence 1223332 45666888986655 9999985 34 599999999999433221 1123555666655543
No 49
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.58 E-value=6.3e-14 Score=138.79 Aligned_cols=228 Identities=15% Similarity=0.166 Sum_probs=144.1
Q ss_pred chHHHhhhhhcceEEEEeeCCCC-CC-------------------c------------CCCccEEEEccCc-hhHHHHHH
Q 019600 46 QPKLEGLARNKGILFVAIDQNRP-LS-------------------D------------QGPFDIVLHKLTG-KEWRQILE 92 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~-l~-------------------~------------qg~~DvilhK~~~-~~~~~~l~ 92 (338)
..+++++|+++|++++.+|.+.. .. + ...+|+|+.-... .+. ..+.
T Consensus 13 ~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~-~~~~ 91 (451)
T 2vpq_A 13 AVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAEN-ADFA 91 (451)
T ss_dssp HHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTC-HHHH
T ss_pred HHHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCccccC-HHHH
Confidence 34578888999999988864311 00 0 1235555543210 011 1223
Q ss_pred HHHHhCCCceeeC-hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCC
Q 019600 93 EYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 169 (338)
Q Consensus 93 ~~~~~~p~v~ViD-p~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (338)
+.. +..|++++. ++++++.+.||..+.+.|+++ +||+|++. .+. +.+++.+.+ ..++||+|+||..
T Consensus 92 ~~~-~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~ 160 (451)
T 2vpq_A 92 ELC-EACQLKFIGPSYQSIQKMGIKDVAKAEMIKA-------NVPVVPGSDGLMK-DVSEAKKIA--KKIGYPVIIKATA 160 (451)
T ss_dssp HHH-HTTTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSCBS-CHHHHHHHH--HHHCSSEEEEETT
T ss_pred HHH-HHcCCeEECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccCcC-CHHHHHHHH--HhcCCcEEEEECC
Confidence 333 335888766 589999999999999999975 89998865 453 222233322 3478999999988
Q ss_pred CCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEEE-EEec-CCCCCcc
Q 019600 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFS-LPDVTKQ 231 (338)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~~-~R~S-lp~~~~~ 231 (338)
++ +|.++.++.++++|... +.++++||||+ +++++.|.++++ ++... .|.. ..
T Consensus 161 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~~~~----- 231 (451)
T 2vpq_A 161 GG---GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIE-NFRHIEIQIVGDSYGNVIHLGERDCTIQ----- 231 (451)
T ss_dssp CC---TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCC-SEEEEEEEEEECTTSCEEEEEEEEEEEE-----
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC-CCeEEEEEEEEcCCCCEEEEeccccchh-----
Confidence 53 57899999999877542 46899999996 237899888854 34433 2211 10
Q ss_pred cccCCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEeccCCC
Q 019600 232 DLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFP 309 (338)
Q Consensus 232 ~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~-GvDvi~~~~~g~~~~ViDVN~fP 309 (338)
......+. ..+.. +++.. .+.+.++|.++.++||+.-+ ++|++++..+| ++||+|||.-|
T Consensus 232 --~~~~~~~~----------~~P~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~R~ 293 (451)
T 2vpq_A 232 --RRMQKLVE----------EAPSPILDDET-----RREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNTRI 293 (451)
T ss_dssp --ETTEEEEE----------EESCTTCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSC
T ss_pred --ccccceEE----------EcCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeCCC
Confidence 00000000 00111 21111 34688999999999999854 59999982245 79999999999
Q ss_pred CCC
Q 019600 310 GYG 312 (338)
Q Consensus 310 g~~ 312 (338)
|-.
T Consensus 294 ~~~ 296 (451)
T 2vpq_A 294 QVE 296 (451)
T ss_dssp CTT
T ss_pred CCc
Confidence 754
No 50
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.58 E-value=5e-14 Score=140.02 Aligned_cols=226 Identities=13% Similarity=0.149 Sum_probs=144.7
Q ss_pred hHHHhhhhhcceEEEEeeCCCCC-C--------------------c------------CCCccEEEEccCc-hhHHHHHH
Q 019600 47 PKLEGLARNKGILFVAIDQNRPL-S--------------------D------------QGPFDIVLHKLTG-KEWRQILE 92 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id~~~~l-~--------------------~------------qg~~DvilhK~~~-~~~~~~l~ 92 (338)
.+++++|+++|++++.+|.+... . . ...+|+|+.-... .+.. .+.
T Consensus 19 ~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~~-~~~ 97 (461)
T 2dzd_A 19 IRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENI-QFA 97 (461)
T ss_dssp HHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTCH-HHH
T ss_pred HHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCH-HHH
Confidence 45788899999999998765311 0 0 0135655543200 0111 222
Q ss_pred HHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCC
Q 019600 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 169 (338)
Q Consensus 93 ~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (338)
+..++ -|++++ +++++++.+.||..+.+.|+++ +||+|++. .+. +.+++.+.+ ..++||+|+||..
T Consensus 98 ~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~ 166 (461)
T 2dzd_A 98 KRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFA--EAHGYPIIIKAAL 166 (461)
T ss_dssp HHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHH--HHHCSCEEEEEST
T ss_pred HHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHH--HhcCCcEEEEeCC
Confidence 22322 377765 7799999999999999999875 89999986 443 222233222 3478999999988
Q ss_pred CCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEE-EEEecCCCCCccc
Q 019600 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKV-VRRFSLPDVTKQD 232 (338)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~-~~R~Slp~~~~~~ 232 (338)
+. +|.+|.++.+.++|... +.++++||||+ +++.+.|.++++ ++.. ..|.. +..
T Consensus 167 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~~~---- 237 (461)
T 2dzd_A 167 GG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-SVQ---- 237 (461)
T ss_dssp TC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-EEE----
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-ccc----
Confidence 54 57789999999887642 46899999996 347899888864 2432 23311 000
Q ss_pred ccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCCCC
Q 019600 233 LSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 233 ~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~fPg 310 (338)
......+.+ + +. .+++.. .+.+.++|.++.++||+..++ +|++++. | ++||+|||.-||
T Consensus 238 -~~~~~~~~~---------~-P~~~l~~~~-----~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R~~ 298 (461)
T 2dzd_A 238 -RRHQKVVEV---------A-PSVSLSDEL-----RQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPRIQ 298 (461)
T ss_dssp -ETTEEEEEE---------E-SCTTSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESSCC
T ss_pred -ccccceEEE---------C-CcccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECCCC
Confidence 000000000 0 11 121111 356889999999999999866 9999985 4 699999999997
Q ss_pred CC
Q 019600 311 YG 312 (338)
Q Consensus 311 ~~ 312 (338)
..
T Consensus 299 ~~ 300 (461)
T 2dzd_A 299 VE 300 (461)
T ss_dssp GG
T ss_pred Cc
Confidence 53
No 51
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.58 E-value=5.4e-14 Score=137.92 Aligned_cols=180 Identities=15% Similarity=0.121 Sum_probs=115.9
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCccee
Q 019600 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 100 ~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
|++++ +++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+.+ ..++||+|+||..+. +|.+
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~---gg~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFR-EPLEALAYL--EEVGVPVVVKDSGLA---AGKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEES-SHHHHHHHH--HHHCSSEEEECTTSC---SSTT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCC
Confidence 77787 8999999999999999999975 89999998885 222233322 247899999998743 5789
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEEC--CEEEEE--EEecCCCCCcccccCCCceeeecCc
Q 019600 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVG--EAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRV 245 (338)
Q Consensus 179 m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV~VIG--d~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~ 245 (338)
+.++.+.++|.+. ..++++||||+ |.+|.|.+++ +.++.. .|..-+.. .++ .+ .++ .
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~-~~~----~~-~~~--g 221 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPSQDHKRLL-DGD----QG-PMT--G 221 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCBEECCEEE-TTT----EE-EEC--S
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchheechhhc-cCC----CC-CcC--C
Confidence 9999999887642 26899999996 8999999883 334432 12111000 000 00 010 0
Q ss_pred ccccccCCCCCCCccccCCCChHHH-HHHHHHHHHHh---CCc---EeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 246 SCAAASADDADLDPCVAELPPRPLL-ERLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 246 s~~~~~~~~~~~~~~~~~~p~~~~~-~~lA~~l~~~L---Gl~---l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
.. +.. .+..+++.. .+.+ ++++.++.++| |+. ++++|++++. +| ++|+|||.-||-.
T Consensus 222 ~~-~~~-~p~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 285 (417)
T 2ip4_A 222 GM-GAV-APYPMDEAT-----LRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDP 285 (417)
T ss_dssp CS-EEE-ESCCCCHHH-----HHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTT
T ss_pred CC-eee-eCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCc
Confidence 00 000 111121111 1223 55577777776 554 4669999975 34 8999999999844
No 52
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.58 E-value=6.3e-14 Score=139.09 Aligned_cols=224 Identities=10% Similarity=0.057 Sum_probs=133.8
Q ss_pred hhhhcceEEEEeeCCCCCCc---------------------CCCccEEEEccCchhH-HHHHHHHHHhCCCceee-ChHH
Q 019600 52 LARNKGILFVAIDQNRPLSD---------------------QGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPY 108 (338)
Q Consensus 52 ~~~~~gi~~~~id~~~~l~~---------------------qg~~DvilhK~~~~~~-~~~l~~~~~~~p~v~Vi-Dp~~ 108 (338)
++++.|+..+.+|+..+-.. ...+|+|+. ..+.. ...+.+..++ .|++++ .+++
T Consensus 40 ~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~d~vi~--~~E~~~~~~~~~~l~~-~gi~~~g~~~~ 116 (451)
T 2yrx_A 40 AAQSPLVGKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQQAIDLTIV--GPEAPLASGIVDRFMA-EGLRIFGPSQR 116 (451)
T ss_dssp HHTCTTEEEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHHTTCSEEEE--CSHHHHHTTHHHHHHH-TTCCEESCCHH
T ss_pred HHhcCCCCEEEEECCChhhhhhCceeccCCCCHHHHHHHHHHcCCCEEEE--CCchHHHHHHHHHHHH-CCCCEeCccHH
Confidence 44677888777765432110 125677775 22222 1222222222 478887 7889
Q ss_pred HHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhH
Q 019600 109 AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (338)
Q Consensus 109 ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 188 (338)
+++.+.||..+.+.|+++ +||+|++..+. +.+++.+.+ ..++||+|+||..+. +|.++.++.+.+++
T Consensus 117 ~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~PvVvKp~~~~---gg~Gv~~v~~~~el 183 (451)
T 2yrx_A 117 AALIEGSKAFAKELMKKY-------GIPTADHAAFT-SYEEAKAYI--EQKGAPIVIKADGLA---AGKGVTVAQTVEEA 183 (451)
T ss_dssp HHHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEECC-------CCEEEESSHHHH
T ss_pred HHHHhhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HhcCCcEEEEeCCCC---CCCcEEEECCHHHH
Confidence 999999999999999975 89999998885 222233322 247899999998853 57899999999887
Q ss_pred hcc-------------CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCCcccccCCCceeeecCccccccc
Q 019600 189 KKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 251 (338)
Q Consensus 189 ~~l-------------~~p~vvQeFI~h~g~~~KV~VI--Gd~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~ 251 (338)
... ..++++||||+ |.+|.|.++ |+.+... .|..- ..+++......+..
T Consensus 184 ~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~------------~~~~~~~~~~~g~~ 249 (451)
T 2yrx_A 184 LAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGEKVYPLAIAQDHK------------RAYDGDEGPNTGGM 249 (451)
T ss_dssp HHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETTEEEECCCBEECC------------EEETTTEEEECSCS
T ss_pred HHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCCEEEEeeeEEecc------------ccccCCCCCCCCCC
Confidence 641 26899999996 899999887 4433322 11100 01110000000000
Q ss_pred --CCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCcE---eEEEEEEeCCCCCeEEEEeccCCCCCCC
Q 019600 252 --ADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVIDINYFPGYGK 313 (338)
Q Consensus 252 --~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~L---Gl~l---~GvDvi~~~~~g~~~~ViDVN~fPg~~g 313 (338)
..+.. +++.. .+.+ ++++.++.++| |+.+ +++|++++. +| ++|+|||.-||-.+
T Consensus 250 ~~~~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 250 GAYSPVPQISDEM-----MDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG--PKVIEFNARFGDPE 313 (451)
T ss_dssp EEEESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTH
T ss_pred eEEccCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCcH
Confidence 01111 11111 1223 55677777765 6654 568999985 34 89999999998543
No 53
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=1.4e-13 Score=138.13 Aligned_cols=172 Identities=15% Similarity=0.156 Sum_probs=119.4
Q ss_pred CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCccee
Q 019600 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (338)
Q Consensus 99 p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (338)
-|++ -.+++++..+.||..+.++|+++ |||+|++..+.+ .+++.+. ...++||+|+||..+. +|.+
T Consensus 124 ~Gi~-g~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~--~~~lg~PvVVKP~~g~---gg~G 189 (474)
T 3vmm_A 124 LGLR-GAGVQAAENARDKNKMRDAFNKA-------GVKSIKNKRVTT-LEDFRAA--LEEIGTPLILKPTYLA---SSIG 189 (474)
T ss_dssp TTCC-CSCHHHHHHTTCHHHHHHHHHHT-------TSCCCCEEEECS-HHHHHHH--HHHSCSSEEEEESSCC---TTTT
T ss_pred cCCC-CCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHH--HHHcCCCEEEEECCCC---cCce
Confidence 4666 88999999999999999999975 899999988852 2223332 2458999999998854 4778
Q ss_pred eEEEeChhhHhcc-------------------CCCeEEEecccCCCcE------------E--EEEEECCEEEEE--EEe
Q 019600 179 LSLAYDQYSLKKL-------------------EPPLVLQEFVNHGGVL------------F--KVYIVGEAIKVV--RRF 223 (338)
Q Consensus 179 m~iv~~~~~L~~l-------------------~~p~vvQeFI~h~g~~------------~--KV~VIGd~v~~~--~R~ 223 (338)
|.++.++++|.+. +.++++||||+ |.. | .+++.++++.++ .++
T Consensus 190 v~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~--G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~ 267 (474)
T 3vmm_A 190 VTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQ--GEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDK 267 (474)
T ss_dssp CEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCC--BCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCC--CceeeeeecccccceeEEEEEEECCeEEEEEEEee
Confidence 9999999876531 46899999996 443 3 446677775533 222
Q ss_pred cCCCCCcccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEeE--EEEEEeCCCCCeEE
Q 019600 224 SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN--LDIIREHGTRDQFY 301 (338)
Q Consensus 224 Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G--vDvi~~~~~g~~~~ 301 (338)
. +.....+ ... ..+..+++.. .+.+.++|.++.+++|+.-.+ ||++++. +| +++
T Consensus 268 ~-~~~~~~~-----------~~~-----~~Pa~l~~~~-----~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg-~~~ 323 (474)
T 3vmm_A 268 T-PQIGFTE-----------TSH-----ITPSILDEEA-----KKKIVEAAKKANEGLGLQNCATHTEIKLMK-NR-EPG 323 (474)
T ss_dssp C-CCBTTBC-----------CEE-----EESCCCCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GG-EEE
T ss_pred c-cCCCccc-----------eEE-----EECCCCCHHH-----HHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CC-CEE
Confidence 1 1100000 000 0122222211 356899999999999999877 9999986 45 799
Q ss_pred EEeccCCCC
Q 019600 302 VIDINYFPG 310 (338)
Q Consensus 302 ViDVN~fPg 310 (338)
+||||.-||
T Consensus 324 ~iEvNpR~~ 332 (474)
T 3vmm_A 324 LIESAARFA 332 (474)
T ss_dssp EEEEESSCC
T ss_pred EEEEeCCCC
Confidence 999997776
No 54
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.56 E-value=5.3e-14 Score=138.15 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=117.0
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcce
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
-|++++ +++++++.+.||..+.+.|+++ +||+|++..++ +.+++.+.+ ..++||+|+||..+. +|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~PvvvKp~~g~---gg~ 151 (424)
T 2yw2_A 85 RGLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFT-DFEKAKEYV--EKVGAPIVVKADGLA---AGK 151 (424)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEESSCC---TTC
T ss_pred CCCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HHcCCcEEEEeCCCC---CCC
Confidence 478887 8899999999999999999975 89999998885 222233322 247899999998853 578
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCCcccccCCCcee
Q 019600 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVF 240 (338)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VI--Gd~v~~~--~R~Slp~~~~~~~~~~~g~~ 240 (338)
++.++.+.++|.+. +.++++||||+ |+++.|.++ |+.++.. .|..-+.+ + +..
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~---~-----~~~ 221 (424)
T 2yw2_A 152 GAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYVPLPTSQDHKRLL---D-----EDK 221 (424)
T ss_dssp SEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEECCEEE---T-----TTE
T ss_pred CEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEEeecceeeccccc---c-----CCC
Confidence 99999999887642 25899999996 889998877 4544432 12110000 0 000
Q ss_pred eecCcccccccCCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCcE---eEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 241 RFPRVSCAAASADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 241 ~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~L---Gl~l---~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
..+.... +.. .+.. +++.. .+.+ ++++.++.++| |+.+ +++|++++. +| ++|+|||.-||-.
T Consensus 222 ~~~~g~~-~~~-~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 291 (424)
T 2yw2_A 222 GPNTGGM-GAY-SPTPVINEEV-----EKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITK-EG--PKVLEFNVRLGDP 291 (424)
T ss_dssp EEECSCS-EEE-ESCTTSCHHH-----HHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTT
T ss_pred CCCCCCC-eeE-CCCccCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCc
Confidence 0000000 000 1111 21111 1233 36777777776 5554 559999985 34 8999999999944
Q ss_pred C
Q 019600 313 K 313 (338)
Q Consensus 313 g 313 (338)
+
T Consensus 292 ~ 292 (424)
T 2yw2_A 292 E 292 (424)
T ss_dssp T
T ss_pred H
Confidence 3
No 55
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.54 E-value=4.3e-14 Score=138.66 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=116.9
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcce
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
-|++++ .++++++.+.||..+.+.|+++ +||+|++..++ +.+++.+.+ ..++||+|+||..+ + +|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~--~-~g~ 151 (422)
T 2xcl_A 85 AGLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFT-SFDEAKAYV--QEKGAPIVIKADGL--A-AGK 151 (422)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEESSC--G-GGT
T ss_pred CCCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HhcCCCEEEEeCCC--C-CCC
Confidence 478887 8999999999999999999975 89999998885 222233322 24789999999884 3 678
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEE--CCEEEEE--EEecCCCCCcccccCCCcee
Q 019600 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVF 240 (338)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VI--Gd~v~~~--~R~Slp~~~~~~~~~~~g~~ 240 (338)
++.++.+.+++... ..++++||||+ |+++.|.++ |+.++.. .|..-+.+ +. ..+.
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~~~~~~~~~~~~~~~~---~~--~~~~- 223 (422)
T 2xcl_A 152 GVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGEKVYPMVIAQDHKRAF---DG--DKGP- 223 (422)
T ss_dssp CEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEEEEEEE---GG--GEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCCEEEecceeeeeehhc---CC--CCCC-
Confidence 99999999887642 26899999996 899999888 4443321 11100000 00 0000
Q ss_pred eecCcccccccCCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCcE---eEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 241 RFPRVSCAAASADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 241 ~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~L---Gl~l---~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
++ ... +.. .+.. +++.. .+.+ ++++.++.++| |+.+ +++|++++. +| ++|+|||.-||-.
T Consensus 224 ~~--g~~-~~~-~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~g--~~viEiN~R~g~~ 291 (422)
T 2xcl_A 224 NT--GGM-GAY-SPVPQISEET-----VRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-NG--SKVIEFNARFGDP 291 (422)
T ss_dssp EE--EEE-EEE-ESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTT
T ss_pred CC--CCC-eeE-ccCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-CC--cEEEEEecCCCCc
Confidence 00 000 000 1111 21111 1223 34777777775 6655 568999985 34 8999999999955
Q ss_pred C
Q 019600 313 K 313 (338)
Q Consensus 313 g 313 (338)
+
T Consensus 292 ~ 292 (422)
T 2xcl_A 292 E 292 (422)
T ss_dssp T
T ss_pred H
Confidence 4
No 56
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.54 E-value=1.4e-13 Score=135.21 Aligned_cols=180 Identities=12% Similarity=0.109 Sum_probs=118.9
Q ss_pred eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEE
Q 019600 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (338)
Q Consensus 102 ~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 181 (338)
++-.++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+. ...++||+|+||..+. +|.+|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~e~~~~--~~~~g~PvvvKp~~~~---gg~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAE-TPEELREK--IKKFSPPYVIKADGLA---RGKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEES-SHHHHHHH--HTTSCSSEEEEESSCC---SSCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEEC-CHHHHHHH--HHhcCCCEEEEeCCCC---CCCCEEE
Confidence 5669999999999999999999975 89999998885 22223222 2468999999998853 5789999
Q ss_pred EeChhhHhcc------C-------CCeEEEecccCCCcEEEEEEE--CCEEEEEEEecCCCCCcccccCCCceeeecCcc
Q 019600 182 AYDQYSLKKL------E-------PPLVLQEFVNHGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVS 246 (338)
Q Consensus 182 v~~~~~L~~l------~-------~p~vvQeFI~h~g~~~KV~VI--Gd~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s 246 (338)
+.++++|.+. . .++++||||+ |+.+.|.++ |+.+..... ..+.. ..+++....
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~--~~~~~--------~~~~~~~~~ 227 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPF--VRDYK--------RLMDGDRGP 227 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCC--CEECC--------EEETTTEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeee--eEeee--------eccCCCCCC
Confidence 9999887641 1 3899999996 899999888 443332210 00000 001000000
Q ss_pred cccc--cCCCCCCCccccCCCChHHHHHHHHHHHHHh-----CC-cEeEEEEEEeCCCCCeEEEEeccCCCCCCCc
Q 019600 247 CAAA--SADDADLDPCVAELPPRPLLERLAKELRRQL-----GL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 314 (338)
Q Consensus 247 ~~~~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L-----Gl-~l~GvDvi~~~~~g~~~~ViDVN~fPg~~gv 314 (338)
..+. ...+..+++.. .+.++++|.++.++| +. .++++|++++. +| +||+|||.-||-.+.
T Consensus 228 ~~g~~~~~~P~~l~~~~-----~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 228 NTGGMGSWGPVEIPSDT-----IKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD--PYILEYNVRLGDPET 295 (412)
T ss_dssp ECSCSEEEECCCCCHHH-----HHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTHH
T ss_pred CCCCceEEECCCCCHHH-----HHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC--cEEEEEecCCCCCcc
Confidence 0000 00111122211 346789999999999 44 55669999975 34 899999999986643
No 57
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.50 E-value=1.7e-13 Score=140.69 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=138.8
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L 123 (338)
....++++|++.|++.+..--.. +.+. ..+.+..+ .-|++++ .++++++.+.||..+.+++
T Consensus 127 d~~~Il~~a~~~~vdaV~pG~Gf-lsEn----------------~~~a~~le-~~Gi~~iGp~~~ai~~~~DK~~ak~ll 188 (587)
T 3jrx_A 127 NVELIVDIAKRIPVQAVWAGWGH-ASEN----------------PKLPELLC-KNGVAFLGPPSEAMWALGDKIASTVVA 188 (587)
T ss_dssp CHHHHHHHHHHTTCSEEECCSST-TTTC----------------THHHHHHH-TTTCEESSCCHHHHHHHCSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEeCCCc-cccC----------------HHHHHHHH-HCCCCeeCCCHHHHHHhCCHHHHHHHH
Confidence 34568888888887765432111 1111 01122222 2588888 8999999999999999999
Q ss_pred HhccccCCCCCccCCcEEE--E--ec---------------------CCCChhHHH-HhcCCCCcEEEeeCCCCCCCcce
Q 019600 124 ADMNLSNSYGKVDVPRQLV--I--ER---------------------DASSIPDVV-LKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 124 ~~~~l~~~~~~i~~P~~~~--~--~~---------------------~~~~~~~~l-~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
+++ |||+|++.. + .. ...+..+.. ....++||+|+||..++ +|.
T Consensus 189 ~~a-------GVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~Gg---GGk 258 (587)
T 3jrx_A 189 QTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGG---GGK 258 (587)
T ss_dssp HHT-------TCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCC---SSS
T ss_pred HHc-------CCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCC---CCC
Confidence 875 899998764 0 00 011122211 12458999999998854 578
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECCE---EEE-EEEe-cCCCCCcccccCCCceeeec
Q 019600 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQDLSTSAGVFRFP 243 (338)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~-~~R~-Slp~~~~~~~~~~~g~~~~~ 243 (338)
+|.++.++++|.+. +.++++|+||+ +++.+-|-|++|. ++. ..|. +.. ..+
T Consensus 259 Gv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~vl~D~~G~vv~l~~rd~siq--------------rr~ 323 (587)
T 3jrx_A 259 GIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVSLFGRDCSIQ--------------RRH 323 (587)
T ss_dssp SEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECSSSCEEEEEEEEEEEE--------------SSS
T ss_pred CeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeeecccc--------------ccc
Confidence 99999999887652 57899999996 2499999999863 332 2332 110 001
Q ss_pred CcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 244 RVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 244 ~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGl~l-~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
..... ..++. +++.. .+.+.++|.++.+++|..- ++||++.+. +| ++|++|||.-|+-.
T Consensus 324 qk~ie---~aPa~~l~~~~-----~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG-~~yflEINpRl~~e 384 (587)
T 3jrx_A 324 QKIVE---EAPATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DG-SFHFLELNPRLQVE 384 (587)
T ss_dssp CEEEE---EESCCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECS-SS-CEEEEEEESSCCTT
T ss_pred cceeE---ecCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEeC-CC-CEEEEEEeCCCCCc
Confidence 00000 00111 12211 3568899999999999964 459999975 35 69999999999854
No 58
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.50 E-value=3.5e-13 Score=137.36 Aligned_cols=215 Identities=14% Similarity=0.113 Sum_probs=132.2
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L 123 (338)
....++++|++.|++.+..-... + .+ . ..+.+..++ -|++++ .++++++.+.||..+.+++
T Consensus 111 d~~~ii~~a~~~~~daI~pg~gf-l--------------sE-~-~~~a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~ll 172 (540)
T 3glk_A 111 NVELIVDIAKRIPVQAVWAGWGH-A--------------SE-N-PKLPELLCK-NGVAFLGPPSEAMWALGDKIASTVVA 172 (540)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSG-G--------------GG-C-THHHHHHHH-TTCEESSCCHHHHC---CHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCEEEeCCCc-c--------------cc-C-HHHHHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHH
Confidence 34668888998887765432111 1 11 1 111222222 488888 9999999999999999999
Q ss_pred HhccccCCCCCccCCcEEE--E--ec---------------------CCCChhHHH-HhcCCCCcEEEeeCCCCCCCcce
Q 019600 124 ADMNLSNSYGKVDVPRQLV--I--ER---------------------DASSIPDVV-LKAGLTLPLVAKPLVADGSAKSH 177 (338)
Q Consensus 124 ~~~~l~~~~~~i~~P~~~~--~--~~---------------------~~~~~~~~l-~~~~l~fP~VvKp~~a~Gs~~sh 177 (338)
+++ |||+|++.. + .. ...+..+.. ....++||+|+||..++ +|.
T Consensus 173 ~~~-------GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~gg---GG~ 242 (540)
T 3glk_A 173 QTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGG---GGK 242 (540)
T ss_dssp HHT-------TCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC------
T ss_pred HHc-------CCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCC---CCC
Confidence 875 899999864 0 00 011122111 12358999999998854 578
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECCE---EEE-EEEe-cCCCCCcccccCCCceeeec
Q 019600 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQDLSTSAGVFRFP 243 (338)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~-~~R~-Slp~~~~~~~~~~~g~~~~~ 243 (338)
+|.++.++++|.+. +.++++|+||+ +++.+-|-|++|. +.. ..|. +.. ..+
T Consensus 243 Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V~vl~d~~G~vv~l~~rd~s~q--------------r~~ 307 (540)
T 3glk_A 243 GIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVSLFGRDCSIQ--------------RRH 307 (540)
T ss_dssp -EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEEEEEECTTSCEEEEEEEEEEEC-----------------
T ss_pred CEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeceeeeee--------------ecc
Confidence 99999999887652 57899999995 2399999999762 332 2332 111 001
Q ss_pred CcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 244 RVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 244 ~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
..... ..+.. +++.. .+.+.++|.++.++||+. .++||++.+. +| ++|++|||.-|+-.
T Consensus 308 ~k~ie---~~Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~VEf~~d~-dg-~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 308 QKIVE---EAPATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DG-SFHFLELNPRLQVE 368 (540)
T ss_dssp CCSEE---EESCTTSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEECSCCTT
T ss_pred cceEE---ecCCCCCCHHH-----HHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEEEECCCCCc
Confidence 00000 00111 11111 356889999999999996 4459999985 35 69999999999854
No 59
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.49 E-value=2.6e-13 Score=134.62 Aligned_cols=182 Identities=11% Similarity=0.066 Sum_probs=115.7
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCc-EEEeeCCCCCCCcc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKS 176 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~Gs~~s 176 (338)
.|++++ +++++++.+.||..+.+.|+++ +||+|++..+. +.+++.+.+ ..++|| +|+||..+. +|
T Consensus 111 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvvKp~~~~---gg 177 (452)
T 2qk4_A 111 AGVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFT-KPEEACSFI--LSADFPALVVKASGLA---AG 177 (452)
T ss_dssp TTCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEES-SHHHHHHHH--HHCSSCEEEEEESBC------
T ss_pred cCCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHHH--HhCCCCeEEEEeCCCC---CC
Confidence 478888 8999999999999999999975 89999999885 222233322 348999 999998753 57
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEEC--CEEEEE--EEecCCCCCcccccCCCce
Q 019600 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVG--EAIKVV--RRFSLPDVTKQDLSTSAGV 239 (338)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIG--d~v~~~--~R~Slp~~~~~~~~~~~g~ 239 (338)
.++.++.++++|.+. ..++++||||+ |+++.|.+++ +.+... .|..-+.. +. ..+
T Consensus 178 ~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~~~---~~--~~~- 249 (452)
T 2qk4_A 178 KGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPMPPAQDHKRLL---EG--DGG- 249 (452)
T ss_dssp CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEECCCBEEEEEEE---TT--TEE-
T ss_pred CCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEcceeeeccccc---CC--CCC-
Confidence 899999999887642 36899999996 8999998884 323322 11100000 00 000
Q ss_pred eeecCcccccccCCCCC-CCccccCCCChHHHH-HHHHHHHHHh---CC---cEeEEEEEEeCCCCCeEEEEeccCCCCC
Q 019600 240 FRFPRVSCAAASADDAD-LDPCVAELPPRPLLE-RLAKELRRQL---GL---RLFNLDIIREHGTRDQFYVIDINYFPGY 311 (338)
Q Consensus 240 ~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~-~lA~~l~~~L---Gl---~l~GvDvi~~~~~g~~~~ViDVN~fPg~ 311 (338)
.++ ... +. ..+.. +++.. .+.+. ++|.++.++| |+ .++++|++++. +| ++|+|||.-||-
T Consensus 250 ~~~--g~~-~~-~~P~~~l~~~~-----~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~~~ 317 (452)
T 2qk4_A 250 PNT--GGM-GA-YCPAPQVSNDL-----LLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG--PKVLEFNCRFGD 317 (452)
T ss_dssp EEE--EEE-EE-EESCTTCCHHH-----HHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE--EEEEEEESSCCT
T ss_pred CCC--CCc-ee-eccCccCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEeccCCC
Confidence 000 000 00 01111 21111 23343 6777888776 44 45779999985 34 899999999995
Q ss_pred CC
Q 019600 312 GK 313 (338)
Q Consensus 312 ~g 313 (338)
.+
T Consensus 318 ~~ 319 (452)
T 2qk4_A 318 PE 319 (452)
T ss_dssp TT
T ss_pred cH
Confidence 43
No 60
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.47 E-value=1.4e-13 Score=143.73 Aligned_cols=228 Identities=12% Similarity=0.146 Sum_probs=142.0
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC-------c-------------------------CCCccEEEEccCc-hhHHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLS-------D-------------------------QGPFDIVLHKLTG-KEWRQIL 91 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~-------~-------------------------qg~~DvilhK~~~-~~~~~~l 91 (338)
+..+++++|+++|+.++.++.+..-. + ....|+|+.-... .+... +
T Consensus 39 ia~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~-~ 117 (675)
T 3u9t_A 39 IACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENAD-F 117 (675)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCHH-H
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHHHHHHhCcCEEEeCCcccccCHH-H
Confidence 45678999999999999996532100 0 0123544432110 01111 2
Q ss_pred HHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-ecCCCChhHHHHhcCCCCcEEEeeCC
Q 019600 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLV 169 (338)
Q Consensus 92 ~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~-~~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (338)
.+..++ -|++++ .++++++.+.||..+.++|.++ +||+|++... -.+.+++.+. ...++||+|+||..
T Consensus 118 a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~s~~e~~~~--a~~igyPvvvKp~~ 187 (675)
T 3u9t_A 118 ARACEE-AGLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQDLETFRRE--AGRIGYPVLLKAAA 187 (675)
T ss_dssp HHHHHT-TTCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCCCTTHHHHH--HHHSCSSBCCBCCC
T ss_pred HHHHHH-cCCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCCCHHHHHHH--HHhCCCcEEEEECC
Confidence 222222 477776 7899999999999999999875 8999987642 1233333332 23589999999988
Q ss_pred CCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECC---EEEE-EEEe-cCCCCCcc
Q 019600 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKV-VRRF-SLPDVTKQ 231 (338)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~-~~R~-Slp~~~~~ 231 (338)
++ ++.+|.++.++++|.+. +.++++|+||+. .+.+-|-|++| ++.. ..|. |....
T Consensus 188 G~---Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g-~reiev~v~~d~~G~vv~l~~rd~s~qr~--- 260 (675)
T 3u9t_A 188 GG---GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLK-PRHVEIQVFADRHGHCLYLNERDCSIQRR--- 260 (675)
T ss_dssp ---------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSS-CBCEEEEEEECSSSCEEEEEEEECCCBSS---
T ss_pred CC---CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCC-CcEEEEEEEEcCCCCEEEEeccccceeec---
Confidence 54 57899999999887642 358999999962 37888888865 3333 3443 21100
Q ss_pred cccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEeccCCC
Q 019600 232 DLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFP 309 (338)
Q Consensus 232 ~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~~ViDVN~fP 309 (338)
...... . .+. .+++.. .+.+.++|.++.+++|+ ..++||++++. +| ++|++|||.-|
T Consensus 261 ----~qk~ie---------~-~Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG-~~~~iEiNpR~ 319 (675)
T 3u9t_A 261 ----HQKVVE---------E-APAPGLGAEL-----RRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RG-QFFFMEMNTRL 319 (675)
T ss_dssp ----SSBCEE---------E-ESCSSCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEECCBCT-TS-CBCBCEEESSC
T ss_pred ----cceEEE---------E-CCCCCCCHHH-----HHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEeccccc
Confidence 000000 0 011 122211 35688999999999999 46679999985 45 68999999999
Q ss_pred CC
Q 019600 310 GY 311 (338)
Q Consensus 310 g~ 311 (338)
+-
T Consensus 320 ~~ 321 (675)
T 3u9t_A 320 QV 321 (675)
T ss_dssp CT
T ss_pred cC
Confidence 74
No 61
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.45 E-value=1.2e-12 Score=143.70 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=140.6
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCCc---------------------------------CCCccEEEEccCc-hhHHHHH
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPLSD---------------------------------QGPFDIVLHKLTG-KEWRQIL 91 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l~~---------------------------------qg~~DvilhK~~~-~~~~~~l 91 (338)
..+++++|+++|+.++.++.+..-.. +...|+|+.-... .+.. .+
T Consensus 16 a~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~~-~~ 94 (1150)
T 3hbl_A 16 AIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENE-QF 94 (1150)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTCH-HH
T ss_pred HHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCcccccH-HH
Confidence 34688999999999999875431110 0124555533210 0111 22
Q ss_pred HHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeC
Q 019600 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPL 168 (338)
Q Consensus 92 ~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (338)
.+..++ -|++++ .++++++.+.||..+.++++++ +||+|++. .+. +.+++.+ ....++||+|+||.
T Consensus 95 a~~le~-~Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~--~a~~iGyPvVVKP~ 163 (1150)
T 3hbl_A 95 ARRCAE-EGIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKE--FAEEAGFPLMIKAT 163 (1150)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTT--TGGGTCSSEEEECC
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHH--HHHHcCCCEEEEeC
Confidence 222222 378877 8899999999999999999975 89999987 443 2223322 12458999999998
Q ss_pred CCCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCCc
Q 019600 169 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTK 230 (338)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~-~~~R~-Slp~~~~ 230 (338)
.++ +|.+|.++.++++|.+. +.++++|+||+ +.+.+-|-|++|. ++ ...|. +...
T Consensus 164 ~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~qr--- 236 (1150)
T 3hbl_A 164 SGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQR--- 236 (1150)
T ss_dssp C----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEES---
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccC-CCcEEEEEEEEeCCCCEEEEEeeccceec---
Confidence 854 57899999999876542 35799999996 2378999888762 33 33332 1100
Q ss_pred ccccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEeccCC
Q 019600 231 QDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 308 (338)
Q Consensus 231 ~~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~G-vDvi~~~~~g~~~~ViDVN~f 308 (338)
. +... ... .+. .+++.. .+.+.++|.++.+++|+.-+| +|++++.+ ++|+||||.-
T Consensus 237 -----~------~~k~--~e~-~Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR 294 (1150)
T 3hbl_A 237 -----R------HQKV--VEV-APSVGLSPTL-----RQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPR 294 (1150)
T ss_dssp -----S------SCEE--EEE-SSCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECS
T ss_pred -----c------Ccee--EEe-cCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCC
Confidence 0 0000 000 011 122211 356889999999999997665 99999853 6999999999
Q ss_pred CCCC
Q 019600 309 PGYG 312 (338)
Q Consensus 309 Pg~~ 312 (338)
|+-.
T Consensus 295 ~~g~ 298 (1150)
T 3hbl_A 295 VQVE 298 (1150)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9843
No 62
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.42 E-value=1.2e-12 Score=143.72 Aligned_cols=178 Identities=13% Similarity=0.177 Sum_probs=84.4
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
-|++++ .++++++.+.||..+.+++.++ +||+|++. .+. +.+++.+. ...++||+|+||..++ +
T Consensus 117 ~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~--a~~igyPvVVKp~~g~---G 183 (1165)
T 2qf7_A 117 AGIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKM--AAAIGYPVMLKASWGG---G 183 (1165)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC---------------------------------------
T ss_pred cCCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHH--HHhcCCCEEEEeCCCC---C
Confidence 477775 6799999999999999999875 89999987 443 22233322 2458999999998854 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEE-EEEecCCCCCcccccCCCc
Q 019600 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRFSLPDVTKQDLSTSAG 238 (338)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~-~~R~Slp~~~~~~~~~~~g 238 (338)
|.+|.++.++++|.+. +.++++||||+ +|+.+.|.+++|. ++. ..|.. .+....+
T Consensus 184 G~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~-------s~~r~~~ 255 (1165)
T 2qf7_A 184 GRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVE-RARHVESQILGDTHGNVVHLFERDC-------SVQRRNQ 255 (1165)
T ss_dssp ------------------------------------CCCS-SEEEEEEEEEECTTSCEEEEEEEEE-------EEEETTE
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecc-CCcEEEEEEEEcCCCcEEEEEeecc-------cceeccc
Confidence 7889999999887642 35799999997 4789999999763 432 23321 0000000
Q ss_pred eeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 239 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 239 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~-GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
.. ... .+. .+++.. .+.+.++|.++.+++|+.-+ ++|++++..+| ++|+||||.-+|..
T Consensus 256 ~~--------~e~-~Pa~~l~~~~-----~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 256 KV--------VER-APAPYLSEAQ-----RQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIEVNPRIQVE 316 (1165)
T ss_dssp EE--------EEE-ESCTTCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCCTT
T ss_pred ce--------EEe-cccccCCHHH-----HHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEEEEcCCCCC
Confidence 00 000 011 122111 35678999999999999855 49999983245 69999999999854
No 63
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.41 E-value=1.4e-12 Score=133.06 Aligned_cols=178 Identities=14% Similarity=0.159 Sum_probs=117.2
Q ss_pred ceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-----ecC-----------------CCChhHHHH-h
Q 019600 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-----ERD-----------------ASSIPDVVL-K 156 (338)
Q Consensus 101 v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~-----~~~-----------------~~~~~~~l~-~ 156 (338)
++++ .++++++.+.||..+.++++++ +||+|++..+ ..+ ..+..+... .
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSA-------KVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 6555 4577999999999999999876 7999987543 000 012222111 2
Q ss_pred cCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc---------CCCeEEEecccCCCcEEEEEEECC---EEEE-EEEe
Q 019600 157 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE---AIKV-VRRF 223 (338)
Q Consensus 157 ~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~g~~~KV~VIGd---~v~~-~~R~ 223 (338)
..++||+|+||..+. +|.+|.++.++++|... ..++++||||+ +|+.+.|.++++ +++. ..|.
T Consensus 231 ~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l~~~~ 306 (554)
T 1w96_A 231 KRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGRD 306 (554)
T ss_dssp HHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 347899999998854 57799999999887652 56899999997 468999998865 3332 2221
Q ss_pred -cCCCCCcccccCCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeE
Q 019600 224 -SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQF 300 (338)
Q Consensus 224 -Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGl-~l~GvDvi~~~~~g~~~ 300 (338)
+..+. ...... .+ +.. +++.. .+.+.++|.++.++||+ .++++|++++..+| ++
T Consensus 307 ~~~~~~-------~~k~~~---~~-------P~~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~~ 363 (554)
T 1w96_A 307 CSVQRR-------HQKIIE---EA-------PVTIAKAET-----FHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KF 363 (554)
T ss_dssp EEEEET-------TEEEEE---EE-------SCCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CE
T ss_pred eeeEee-------ccceee---eC-------CCcCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CE
Confidence 11000 000000 00 111 11111 35688999999999999 56679999973344 68
Q ss_pred EEEeccCCCCCC
Q 019600 301 YVIDINYFPGYG 312 (338)
Q Consensus 301 ~ViDVN~fPg~~ 312 (338)
||+|||.-+|-.
T Consensus 364 ~~iEiN~R~~g~ 375 (554)
T 1w96_A 364 YFLELNPRLQVE 375 (554)
T ss_dssp EEEEEECSCCTT
T ss_pred EEEEeeCCCCcc
Confidence 999999988754
No 64
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.40 E-value=9.8e-13 Score=144.88 Aligned_cols=228 Identities=15% Similarity=0.201 Sum_probs=107.4
Q ss_pred cchHHHhhhhhcceEEEEeeCCCCCC--------------------------------cCCCccEEEEccCc-hhHHHHH
Q 019600 45 LQPKLEGLARNKGILFVAIDQNRPLS--------------------------------DQGPFDIVLHKLTG-KEWRQIL 91 (338)
Q Consensus 45 ~~~~l~~~~~~~gi~~~~id~~~~l~--------------------------------~qg~~DvilhK~~~-~~~~~~l 91 (338)
+..+++++|+++|++++.++.+..-. .....|+|+.-... .+.. .+
T Consensus 42 ia~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn~-~~ 120 (1236)
T 3va7_A 42 IAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENA-DF 120 (1236)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGCH-HH
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEECCccccccH-HH
Confidence 34678999999999999995432100 01135666543211 0111 22
Q ss_pred HHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcE-EEEecCCCChhHHHHhcCCCCcEEEeeCC
Q 019600 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ-LVIERDASSIPDVVLKAGLTLPLVAKPLV 169 (338)
Q Consensus 92 ~~~~~~~p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~-~~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (338)
.+..++ -|++++ .++++++.+.||..+.++++++ +||+|++ .++. +.+++.+ ....++||+|+||..
T Consensus 121 a~~le~-~Gi~~iGps~eai~~~~DK~~ak~ll~~a-------GIPvpp~~~~v~-s~eea~~--~a~~iGyPvVVKP~~ 189 (1236)
T 3va7_A 121 SDRCSQ-ENIVFVGPSGDAIRKLGLKHSAREIAERA-------KVPLVPGSGLIK-DAKEAKE--VAKKLEYPVMVKSTA 189 (1236)
T ss_dssp HHHHHT-TTCEESSCCHHHHHHHHSTTHHHHHHHHT-------TCCCCC-------------------------------
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEecC-CHHHHHH--HHHHcCCCEEEEeCC
Confidence 222222 578776 8899999999999999999975 8999884 4443 3333333 224689999999987
Q ss_pred CCCCCcceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EEEE-EEe-cCCCCCcc
Q 019600 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQ 231 (338)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~~~-~R~-Slp~~~~~ 231 (338)
++ +|.+|.++.++++|.+. +.++++||||+ +++.+.|.|++|. +... .|. +..
T Consensus 190 Gg---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~-G~rEisV~vl~Dg~g~vv~l~~rd~s~q----- 260 (1236)
T 3va7_A 190 GG---GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN-NARHVEIQMMGDGFGKAIAIGERDCSLQ----- 260 (1236)
T ss_dssp -----------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEE-----
T ss_pred CC---CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC-CCeEEEEEEEecCCceEEEEeeeeeeee-----
Confidence 43 57899999999887642 35799999996 2489999999762 3322 332 110
Q ss_pred cccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEeccCCC
Q 019600 232 DLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFP 309 (338)
Q Consensus 232 ~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~-l~GvDvi~~~~~g~~~~ViDVN~fP 309 (338)
..+... ... .+. .+++.. .+.+.++|.++.+++|+. .++||++++.++| ++|+||||.-+
T Consensus 261 ---------r~~~k~--~e~-~Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpRl 322 (1236)
T 3va7_A 261 ---------RRNQKV--IEE-TPAPNLPEAT-----RAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNARL 322 (1236)
T ss_dssp ---------ETTEEE--EEE-ESCSSCCHHH-----HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECSC
T ss_pred ---------ecCcce--EEE-cCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECCC
Confidence 000000 000 011 122221 356889999999999996 5669999986444 79999999988
Q ss_pred CC
Q 019600 310 GY 311 (338)
Q Consensus 310 g~ 311 (338)
+-
T Consensus 323 ~g 324 (1236)
T 3va7_A 323 QV 324 (1236)
T ss_dssp CT
T ss_pred CC
Confidence 63
No 65
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.36 E-value=1.5e-12 Score=136.03 Aligned_cols=176 Identities=15% Similarity=0.241 Sum_probs=83.8
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCc
Q 019600 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (338)
Q Consensus 99 p~v~Vi-Dp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (338)
-|++++ .++++++.+.||..+.++++++ +||+|++. .+. +.+++.+. ...++||+|+||..++ +
T Consensus 98 ~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~~--a~~igyPvVvKp~~gg---g 164 (681)
T 3n6r_A 98 EGVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVKI--SNQIGYPVMIKASAGG---G 164 (681)
T ss_dssp TTCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC-------------------------------------
T ss_pred cCCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHHH--HHhcCCcEEEEECCCC---C
Confidence 378887 8899999999999999999865 89999975 343 23333332 2468999999998743 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCcEEEEEEECCE---EE-EEEEe-cCCCCCcccccCCC
Q 019600 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSA 237 (338)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~g~~~KV~VIGd~---v~-~~~R~-Slp~~~~~~~~~~~ 237 (338)
+.+|.++.++++|... +.++++|+||+. ++.+.|.|++|. +. ...|. |...
T Consensus 165 gkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g-~rei~V~v~~d~~G~vv~l~~rd~s~qr---------- 233 (681)
T 3n6r_A 165 GKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQ-PRHIEIQVLCDSHGNGIYLGERECSIQR---------- 233 (681)
T ss_dssp --------------------------------------CCS-CEEEEEEEECCSSSCCEEEEEEECCCEE----------
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCC-CcEEEEEEEEeCCCCEEEEeeeecceec----------
Confidence 7899999999887652 347999999962 389999999763 22 22333 2100
Q ss_pred ceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEeccCCCCCC
Q 019600 238 GVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYG 312 (338)
Q Consensus 238 g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGl~l~-GvDvi~~~~~g~~~~ViDVN~fPg~~ 312 (338)
.++.. ... .+. .+++.. .+.+.++|.++.+++|+.-+ .||++++. +| ++|++|+|.-|+-.
T Consensus 234 ----~~~k~--~e~-~Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNpR~~~~ 296 (681)
T 3n6r_A 234 ----RNQKV--VEE-APSPFLDEAT-----RRAMGEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNTRLQVE 296 (681)
T ss_dssp ----TTEEC--EEE-ESCSSCCHHH-----HHHHHHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEECSCCTT
T ss_pred ----cCccE--EEe-cCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEecccccCCC
Confidence 00000 000 011 122211 35678999999999999754 59999985 45 68999999999744
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.06 E-value=2.1e-09 Score=102.66 Aligned_cols=218 Identities=12% Similarity=0.100 Sum_probs=119.5
Q ss_pred chHHHhhhhhcceEEEEeeCCCCCC--------c---CCC-c-cEEEEccCc----h-hHHHH--HHHHHHhCCCceeeC
Q 019600 46 QPKLEGLARNKGILFVAIDQNRPLS--------D---QGP-F-DIVLHKLTG----K-EWRQI--LEEYRQTHPEVTVLD 105 (338)
Q Consensus 46 ~~~l~~~~~~~gi~~~~id~~~~l~--------~---qg~-~-DvilhK~~~----~-~~~~~--l~~~~~~~p~v~ViD 105 (338)
..-++.+|+++|+.++.+|.+..-. + ... + | +-+..+ + ++... ++.. +..++++..
T Consensus 13 ~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~d--l~~~~dvitpe~e~v~~~~l~~l--e~~~~p~~p 88 (320)
T 2pbz_A 13 SLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTS--ILNDDGIVVPHGSFVAYLGIEAI--EKAKARFFG 88 (320)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCC--TTCCSSBCCCBTTHHHHSCHHHH--HTCCSCCBS
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHH--HHhcCCEEEecccchhHHHHHHH--HHcCCCcCC
Confidence 3457889999999999999874211 1 112 2 1 101111 1 22211 1121 346889999
Q ss_pred hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeCh
Q 019600 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (338)
Q Consensus 106 p~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 185 (338)
+.+++....||...-+.|.++ |||+|++.. .+++ .++||+|+||..+ + +|+|+.++.+
T Consensus 89 ~~~~l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~g--~-ggkG~~~v~~- 146 (320)
T 2pbz_A 89 NRRFLKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEGP--R-GGSGHFIVEG- 146 (320)
T ss_dssp CSSGGGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-
T ss_pred CHHHHHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECCC--C-CCCCEEEECh-
Confidence 999999999998877888876 899999872 2221 4899999999884 4 6999999999
Q ss_pred hhHhcc----CCCeEEEecccCCCcEEEE--E--EECCEEE-EEEEecCCCCCcccccCCCceeee----cCcccccccC
Q 019600 186 YSLKKL----EPPLVLQEFVNHGGVLFKV--Y--IVGEAIK-VVRRFSLPDVTKQDLSTSAGVFRF----PRVSCAAASA 252 (338)
Q Consensus 186 ~~L~~l----~~p~vvQeFI~h~g~~~KV--~--VIGd~v~-~~~R~Slp~~~~~~~~~~~g~~~~----~~~s~~~~~~ 252 (338)
++|... +.++++||||+ |..+.+ | ++-+++. ...+.-+-+ . .|.+.. +..+-.+.
T Consensus 147 eel~~~~~~~~~~~IiEEfI~--g~~~~~~~f~~~~~g~~e~~~~~~r~e~-~-------~g~~~~p~~~~~~~~~G~-- 214 (320)
T 2pbz_A 147 SELEERLSTLEEPYRVERFIP--GVYLYVHFFYSPILERLELLGVDERVLI-A-------DGNARWPVKPLPYTIVGN-- 214 (320)
T ss_dssp EECSCCCC----CCEEEECCC--SCEEEEEEEEETTTTEEEEEEEEEEEET-T-------CSSSSSCCSCCCCCEEEE--
T ss_pred HHHHHHHHhcCCCEEEEeeec--eEecceeEEeccccCceeEEEecceEEE-E-------CCeeecccCCCceeeecC--
Confidence 988754 25899999997 555531 1 0222222 122211111 1 111110 00000000
Q ss_pred CCCCCCccccCCCChHHHHHHHHHHHHHh------C-CcEeEEEEEEeCCCCCeEEEEeccCC-CC
Q 019600 253 DDADLDPCVAELPPRPLLERLAKELRRQL------G-LRLFNLDIIREHGTRDQFYVIDINYF-PG 310 (338)
Q Consensus 253 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~L------G-l~l~GvDvi~~~~~g~~~~ViDVN~f-Pg 310 (338)
.+..+++.. .+.+.++|.++.++| | ...+++| + +. +| +++|+|||.= +|
T Consensus 215 ~P~~~~~~~-----~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~-~~-dg-~~~v~EIapR~~G 271 (320)
T 2pbz_A 215 RAIALRESL-----LPQLYDYGLAFVRTMRELEPPGVIGPFALH-F-AY-DG-SFKAIGIASRIDG 271 (320)
T ss_dssp EECEECGGG-----HHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-E-EC-SS-SCEEEEEESSBCS
T ss_pred CCCccCHHH-----HHHHHHHHHHHHHHHHhhccCCceeeEEEE-E-cC-CC-cEEEEEecCCCCC
Confidence 011121111 356789999999998 4 5577899 4 32 34 5899999996 44
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.97 E-value=1.5e-08 Score=98.27 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=142.0
Q ss_pred ccHHHHHHHhhhhhccCCCcccCCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCC---cCCCccEEE
Q 019600 3 MMKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLS---DQGPFDIVL 79 (338)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~---~qg~~Dvil 79 (338)
+++++|.+-.++-|.. ..+||..-+- ....++.+|+++|+.++.+|.+..-. .....|-++
T Consensus 2 ~~~~~~~~~~~~~~~~----------~~~I~ilGs~------l~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~ 65 (361)
T 2r7k_A 2 ISKDEILEIFDKYNKD----------EITIATLGSH------TSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFI 65 (361)
T ss_dssp CCHHHHHHHHTTSCTT----------SCEEEEESST------THHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEE
T ss_pred CcHHHHHHHHHhcccc----------CCEEEEECcH------HHHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEE
Confidence 4677775554443322 2336555443 23448889999999999999884321 111223222
Q ss_pred -Ec-cCc---hhHHHH-------------HHHHH-----HhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCcc
Q 019600 80 -HK-LTG---KEWRQI-------------LEEYR-----QTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVD 136 (338)
Q Consensus 80 -hK-~~~---~~~~~~-------------l~~~~-----~~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~ 136 (338)
.- ..+ +...+. +..|. .+.-++++.-+..+++...||...-+.|+++ +||
T Consensus 66 ~~d~~~d~~~~~~l~~l~~~~~vV~pe~~~v~~~gl~~l~~~~g~~v~g~~~a~~~e~~k~~~k~~l~~~-------GIp 138 (361)
T 2r7k_A 66 YVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSFLVPMFGNRRILRWESERSLEGKLLREA-------GLR 138 (361)
T ss_dssp ECSSGGGGGSHHHHHHHHHTTEEECCBHHHHHHHCHHHHHHTCCSCBBSCGGGGGTTTCHHHHHHHHHHT-------TCC
T ss_pred ECCCcccccHHHHHHHHHHcCCEEEeCchhhhHHHHHHHHHHcCCCcCCCHHHHHHhhhHHHHHHHHHHc-------CcC
Confidence 22 112 111111 11111 2245778878888888888998877888875 899
Q ss_pred CCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhhHhcc------------C--CCeEEEeccc
Q 019600 137 VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------E--PPLVLQEFVN 202 (338)
Q Consensus 137 ~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------~--~p~vvQeFI~ 202 (338)
+|++ +. +. ..++||+|+||..+ + +++|+.++.+.+++.+. . .++++||||+
T Consensus 139 tp~~--~~-~~---------~e~~~PvVVK~~~~--a-~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 139 VPKK--YE-SP---------EDIDGTVIVKFPGA--R-GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp CCCE--ES-SG---------GGCCSCEEEECSCC--C-C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCCE--eC-CH---------HHcCCCEEEeeCCC--C-CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 9986 32 21 12468999998763 3 68999999999887542 1 4699999996
Q ss_pred CCCcEEEE---E-EECCEEE--EEEEe--cCC----CCCccc-ccCC-CceeeecCcccccccCCCCCCCccccCCCChH
Q 019600 203 HGGVLFKV---Y-IVGEAIK--VVRRF--SLP----DVTKQD-LSTS-AGVFRFPRVSCAAASADDADLDPCVAELPPRP 268 (338)
Q Consensus 203 h~g~~~KV---~-VIGd~v~--~~~R~--Slp----~~~~~~-~~~~-~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~ 268 (338)
|..+.+ | ++++++. .+.++ +-. .+.+++ +... ...|. -.+. .+..+++.. .+
T Consensus 204 --G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v-----~~G~--~Pa~l~~~~-----~~ 269 (361)
T 2r7k_A 204 --GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYV-----ITGN--IPVVIRESL-----LP 269 (361)
T ss_dssp --SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEE-----EEEE--EECCCCGGG-----HH
T ss_pred --eEEeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceE-----EecC--cCCcCCHHH-----HH
Confidence 666642 1 1244322 22222 100 000000 0000 00010 0000 022222222 46
Q ss_pred HHHHHHHHHHHHh-------CCcEeEEEEEEeCCCCCeEEEEeccCCCC
Q 019600 269 LLERLAKELRRQL-------GLRLFNLDIIREHGTRDQFYVIDINYFPG 310 (338)
Q Consensus 269 ~~~~lA~~l~~~L-------Gl~l~GvDvi~~~~~g~~~~ViDVN~fPg 310 (338)
.+.++|.++.++| ....|+++++++. +| +++|+|||.=||
T Consensus 270 ~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg-~i~V~EIapR~g 316 (361)
T 2r7k_A 270 QVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NL-ELVVFEMSARVD 316 (361)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TS-CEEEEEEESSBC
T ss_pred HHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CC-CEEEEEEcCCCC
Confidence 7889999999998 3566789999864 34 589999999666
No 68
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.4e-11 Score=96.29 Aligned_cols=91 Identities=12% Similarity=0.198 Sum_probs=64.7
Q ss_pred HHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEEEeChhh
Q 019600 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (338)
Q Consensus 110 i~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~ 187 (338)
+..++||..+.++|++ .+||+|++. .+. +.+++.+. ...++||+|+||..+. +|.++.++.+.++
T Consensus 3 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~-~~~~~~~~--~~~~~~P~vvKp~~~~---~~~gv~~v~~~~e 69 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKK-------AEVNTIPGFDGVVK-DAEEAVRI--AREIGYPVMIKASAGG---GGKGMRIAWDDEE 69 (108)
T ss_dssp CCCCCCCCCSTTCCCS-------SCCCCCSCCCSCBS-SHHHHHHH--HHHHCSSEEEEETTSC---CTTTCEEESSHHH
T ss_pred hhhhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHHH--HHhcCCCEEEEECCCC---CCccEEEeCCHHH
Confidence 3467888888777775 489999986 553 22222222 2347899999999854 4678999999988
Q ss_pred Hhcc-------------CCCeEEEecccCCCcEEEEEEEC
Q 019600 188 LKKL-------------EPPLVLQEFVNHGGVLFKVYIVG 214 (338)
Q Consensus 188 L~~l-------------~~p~vvQeFI~h~g~~~KV~VIG 214 (338)
|... +.++++||||+. .+++.|.|+|
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 70 TRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 7542 468999999962 3588887776
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.40 E-value=2.2e-06 Score=83.40 Aligned_cols=150 Identities=13% Similarity=0.197 Sum_probs=90.3
Q ss_pred HHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCC-ceeeChHHHHHHhccHHHHHHHHHhcc
Q 019600 49 LEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPE-VTVLDPPYAIQHLHNRQSMLQCVADMN 127 (338)
Q Consensus 49 l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~-v~ViDp~~ai~~l~dR~~~~~~L~~~~ 127 (338)
..+..+++|. ...++.+ -..+|++..-.....+ +.+ ..+|+ .-.||-......+..|..+.+.+.+..
T Consensus 20 V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~p~-~~l----~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~ 88 (380)
T 3tig_A 20 VAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRLPF-GRL----GHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP 88 (380)
T ss_dssp HHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSCCG-GGS----SCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH
T ss_pred HHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCCCH-HHh----ccCCCcceEEeecCCcccccccHHHHHHHHHhh
Confidence 5567788884 2223332 3468998863222111 011 11255 357888888899999999988886531
Q ss_pred ccCCCCCccCCcEEEE-ecCC--------------------CChhHHH------HhcCCCCcEEEeeCCCCCCCcceeeE
Q 019600 128 LSNSYGKVDVPRQLVI-ERDA--------------------SSIPDVV------LKAGLTLPLVAKPLVADGSAKSHELS 180 (338)
Q Consensus 128 l~~~~~~i~~P~~~~~-~~~~--------------------~~~~~~l------~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (338)
-.. ...=..|++.++ ..+- ++..+.+ ...+-+.++|+||.. |+ .+.|+.
T Consensus 89 ~~~-~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~--~s-rG~GI~ 164 (380)
T 3tig_A 89 ELT-ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSS--GA-KGEGIL 164 (380)
T ss_dssp HHH-TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESC--C-----CCB
T ss_pred hcc-cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCc--cC-CCCCEE
Confidence 001 112357777776 2210 1111111 124567899999977 44 789999
Q ss_pred EEeChhhHhcc----CCCeEEEecccC------CCc--EEEEEEE
Q 019600 181 LAYDQYSLKKL----EPPLVLQEFVNH------GGV--LFKVYIV 213 (338)
Q Consensus 181 iv~~~~~L~~l----~~p~vvQeFI~h------~g~--~~KV~VI 213 (338)
++.+.+++.++ ..++|+|+||.+ +|+ |+|+||+
T Consensus 165 l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 165 ISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp CCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEE
T ss_pred EeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEE
Confidence 99999887653 678999999976 453 8899998
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.29 E-value=3.3e-07 Score=83.20 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=68.2
Q ss_pred hccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCC--CCCcceeeEE-EeChhhHh
Q 019600 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD--GSAKSHELSL-AYDQYSLK 189 (338)
Q Consensus 113 l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~--Gs~~sh~m~i-v~~~~~L~ 189 (338)
.+||..+.++|++. |||+|++.++.+ .++..+. ...++||+|+||..++ |-..+.++.+ +.+++++.
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~-~~ea~~~--a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKT-LDEALEY--AKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESS-HHHHHHH--HHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 47999999999864 899999998852 2222221 2358999999998851 1014667777 79998876
Q ss_pred cc----------------CCCeEEEecccCCCcEEEEEEECCE
Q 019600 190 KL----------------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (338)
Q Consensus 190 ~l----------------~~p~vvQeFI~h~g~~~KV~VIGd~ 216 (338)
+. ..++++|+||+ +|+.+-|.+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 42 15799999998 4889999988874
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.49 E-value=0.00012 Score=71.57 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=63.9
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCC-CCCCcceeeEEEeChhhHhcc----
Q 019600 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL---- 191 (338)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l---- 191 (338)
+..-++|++. |||+|++.++.+ .+++.+. ...++||+|+||... .|...+.+|.++.+++++.+.
T Consensus 6 ~~aK~lL~~~-------GIpvp~~~~~~s-~eea~~a--a~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~ 75 (397)
T 3ufx_B 6 YQAKEILARY-------GVPVPPGKVAYT-PEEAKRI--AEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAI 75 (397)
T ss_dssp HHHHHHHHHT-------TCCCCCEEEESS-HHHHHHH--HHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------CCCCCCeEEECC-HHHHHHH--HHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHh
Confidence 4556777764 899999999853 2223332 234789999999872 233356799999999887642
Q ss_pred ---------CCCeEEEecccCCCcEEEEEEECCE
Q 019600 192 ---------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (338)
Q Consensus 192 ---------~~p~vvQeFI~h~g~~~KV~VIGd~ 216 (338)
...+++|||+++ |+.+-+.++.|.
T Consensus 76 ~~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~ 108 (397)
T 3ufx_B 76 LGMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDR 108 (397)
T ss_dssp TTCEETTEECCCEEEEECCCE-EEEEEEEEEEET
T ss_pred hhhhccCCccceEEEEEeecC-CeeEEEEEEecC
Confidence 247999999974 889999988873
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.43 E-value=0.00024 Score=69.33 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=65.9
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCc-EEEeeCCCC-CCCcceeeEEEeChhhHhcc-
Q 019600 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVAD-GSAKSHELSLAYDQYSLKKL- 191 (338)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l- 191 (338)
+.+.+-++|++. +||+|++.++.+ .+++.+. ...++|| +|+||.... |-..+.++.++.+++++.+.
T Consensus 4 ~E~~aK~lL~~~-------GIpvp~~~~~~s-~eea~~a--a~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 4 HEYQAKQLFARY-------GLPAPVGYACTT-PREAEEA--ASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHH--HHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CcCCCCeeEECC-HHHHHHH--HHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 566777888865 899999998852 2223322 2348999 999998742 22257799999999876531
Q ss_pred ----C---------------CCeEEEecccCCCcEEEEEEECCEE
Q 019600 192 ----E---------------PPLVLQEFVNHGGVLFKVYIVGEAI 217 (338)
Q Consensus 192 ----~---------------~p~vvQeFI~h~g~~~KV~VIGd~v 217 (338)
. .++++|+|+++ |+.+-|.++.|..
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 1 36999999974 7899888887743
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.23 E-value=0.0006 Score=66.61 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=63.1
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCC-cEEEeeCCCCCC-Ccc-------eeeEEEeCh
Q 019600 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGS-AKS-------HELSLAYDQ 185 (338)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~Gs-~~s-------h~m~iv~~~ 185 (338)
+.+.+-++|++. +||+|++.++. +.+++.+. ...++| |+|+||...+|. -.+ .++.++.++
T Consensus 4 ~E~~aK~lL~~~-------GIpvp~~~~~~-s~~ea~~~--a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 4 QEYQSKKLMSDN-------GVKVQRFFVAD-TANEALEA--AKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CHHHHHHHHHHT-------TCCCCCEEEES-SHHHHHHH--HHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CHHHHHHHHHHC-------CcCCCCeEEEC-CHHHHHHH--HHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 445667778764 89999999885 23233332 234899 899999754433 112 468999999
Q ss_pred hhHhcc-----C---------------CCeEEEecccCCCcEEEEEEECCE
Q 019600 186 YSLKKL-----E---------------PPLVLQEFVNHGGVLFKVYIVGEA 216 (338)
Q Consensus 186 ~~L~~l-----~---------------~p~vvQeFI~h~g~~~KV~VIGd~ 216 (338)
+++.+. . ..+++|+|++ .|+.+-|.++.|.
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDR 123 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEET
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC-CceeEEEEEEEcc
Confidence 876541 1 2489999997 4889988888774
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.18 E-value=0.0026 Score=65.47 Aligned_cols=173 Identities=15% Similarity=0.137 Sum_probs=105.5
Q ss_pred EEEEEecccccccccchHHHhhhhhcceEEEEee-CCCCCC--cCC--------CccEEEEccCchhHH-HHHH------
Q 019600 31 VVGYALTSKKTKSFLQPKLEGLARNKGILFVAID-QNRPLS--DQG--------PFDIVLHKLTGKEWR-QILE------ 92 (338)
Q Consensus 31 ~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~~~id-~~~~l~--~qg--------~~DvilhK~~~~~~~-~~l~------ 92 (338)
+|..+..+--.......-|.++|++.|++...++ ++. |. ..| ++|+|. |+..-+|. ..+.
T Consensus 381 ~v~~a~~~~~Ed~~t~~~L~~~a~eaG~~~~~~~~i~d-l~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~ 458 (619)
T 2io8_A 381 FVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDE-LGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDRE 458 (619)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEESSTT-CEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---C
T ss_pred EEEEEecCCccchHHHHHHHHHHHHCCCceEEecchHh-EEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccc
Confidence 4544433322233344558889999999999998 665 32 122 566666 56653342 2210
Q ss_pred ---------------HHHH--hCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHH
Q 019600 93 ---------------EYRQ--THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL 155 (338)
Q Consensus 93 ---------------~~~~--~~p~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~ 155 (338)
+|.. +..++.+|+|+.++. +.||..+.-+.+ +. + .++ -.+++. ++ ... . +.
T Consensus 459 ~~~~~~~~g~~~~g~~ll~~l~~~~v~iieP~~~~l-lsNKailalLw~-l~--p-~hp-~LLpT~-f~--~~~--~-l~ 526 (619)
T 2io8_A 459 FAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVI-PGNKAILPILWS-LF--P-HHR-YLLDTD-FT--VND--E-LV 526 (619)
T ss_dssp CSSCCCCSCCSSCCCCHHHHHTCTTCEEESCGGGGT-TTSTTHHHHHHH-HS--T-TCT-TCCCEE-SS--CCH--H-HH
T ss_pred cccccccccCccchHHHHHHHHhCCCEEECHHHHHH-hhhHHHHHHHHH-hC--C-CCC-CCCCee-ec--CCc--c-cc
Confidence 2332 456899999999987 899987544443 21 1 112 133443 21 111 1 11
Q ss_pred hcCCCCcEEEeeCCCCCCCcceeeEEEeC-hhhHhcc-----CCCeEEEecccCCCcE-----EEEEEECCEEEEE-EEe
Q 019600 156 KAGLTLPLVAKPLVADGSAKSHELSLAYD-QYSLKKL-----EPPLVLQEFVNHGGVL-----FKVYIVGEAIKVV-RRF 223 (338)
Q Consensus 156 ~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~-~~~L~~l-----~~p~vvQeFI~h~g~~-----~KV~VIGd~v~~~-~R~ 223 (338)
.. ..|.||+.+ . ++.+|.++.. .+.+.+. +.++|+|+|++-+..+ +-+|+|||+.... .|.
T Consensus 527 ~~----~yV~KPi~g--R-eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~ 599 (619)
T 2io8_A 527 KT----GYAVKPIAG--R-CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRG 599 (619)
T ss_dssp HH----CEEEEETTC--C-TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred cC----CEEEccCCC--C-CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEec
Confidence 11 599999994 3 6778999875 2222221 5689999999987666 8899999998855 777
Q ss_pred c
Q 019600 224 S 224 (338)
Q Consensus 224 S 224 (338)
+
T Consensus 600 ~ 600 (619)
T 2io8_A 600 D 600 (619)
T ss_dssp E
T ss_pred C
Confidence 6
No 75
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=93.20 E-value=0.74 Score=47.58 Aligned_cols=157 Identities=11% Similarity=0.033 Sum_probs=82.7
Q ss_pred hHHHhhhhhcceEEEEee-CCCCCC--cC--------CCccEEEEccCchhHHHHH-------------------HHHHH
Q 019600 47 PKLEGLARNKGILFVAID-QNRPLS--DQ--------GPFDIVLHKLTGKEWRQIL-------------------EEYRQ 96 (338)
Q Consensus 47 ~~l~~~~~~~gi~~~~id-~~~~l~--~q--------g~~DvilhK~~~~~~~~~l-------------------~~~~~ 96 (338)
.-|.+.|++.|++...++ ++. |. +. .++|+++ |+..-+|...- ..|..
T Consensus 413 ~yL~~~a~eaG~~t~~~~~i~d-L~~~~~G~l~D~~g~~Id~lf-KLyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~ 490 (652)
T 2vob_A 413 LYCMQAAEAVGLEGKLCILFDE-FRFDDNGHVVDSDGVRVRNVW-KTWMWESAITDYYAAREERGENWKPSPKDKVRLCD 490 (652)
T ss_dssp HHHHHHHHHTTCEEEEEETTTT-CEECTTSCEECTTSCBCCEEE-ECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHH
T ss_pred HHHHHHHHHCCCcEEEecchhh-eEECCCCcEECCCCcEeeEEE-ecCCHHHHHHhhhhcccccccccccCccchhHHHH
Confidence 347779999999999987 654 32 11 3677777 67764443211 02332
Q ss_pred --hCC--CceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCC
Q 019600 97 --THP--EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (338)
Q Consensus 97 --~~p--~v~ViDp~~ai~~l~dR~~~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 172 (338)
... .+.+|+|+.++ .+.||.. +.+|.++- + .++--.|.+ + +.+.. +... ..|.||+.+-
T Consensus 491 ~l~~~~~~v~~ieP~wk~-LlsNKai-LalLW~l~--p-~hp~LLpt~--f--~~~~~---~~~~----~yV~KPi~gR- 553 (652)
T 2vob_A 491 LLLGDDWEILYFEPMWKV-IPSNKAI-LPMIYHNH--P-EHPAILKAE--Y--ELTDE---LRKH----GYAKKPIVGR- 553 (652)
T ss_dssp HHSSSCTTSEEESCGGGG-TTTSTTH-HHHHHHHC--T-TCTTBCCEE--S--SCCHH---HHHH----CEEEEECC---
T ss_pred HHhcCCCceEEeChhHHH-hhcCHHH-HHHHHhcc--c-CCCCCCchh--h--cCCCc---cccC----CeEeccCCCC-
Confidence 345 89999999765 4568765 44455431 1 112223332 2 11111 1111 5999999953
Q ss_pred CCcceeeEEEeChhh-Hhc-----cCCCeEEEecccCC-----CcEEEEEEECCEEEEE-EEec
Q 019600 173 SAKSHELSLAYDQYS-LKK-----LEPPLVLQEFVNHG-----GVLFKVYIVGEAIKVV-RRFS 224 (338)
Q Consensus 173 s~~sh~m~iv~~~~~-L~~-----l~~p~vvQeFI~h~-----g~~~KV~VIGd~v~~~-~R~S 224 (338)
++.+|.|+..... ..+ -+.++|+|+|++-+ -..+=+|++|++.... .|.+
T Consensus 554 --eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 554 --VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp ---------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred --CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 5677888754222 122 15789999999842 3467899999998855 7775
No 76
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=93.05 E-value=0.052 Score=54.05 Aligned_cols=130 Identities=15% Similarity=0.279 Sum_probs=73.8
Q ss_pred CCccEEEEccCchhH--------------HHHHHHHHHhCCCceeeChHHHHHHhccHHH------HHHHHHhccccCCC
Q 019600 73 GPFDIVLHKLTGKEW--------------RQILEEYRQTHPEVTVLDPPYAIQHLHNRQS------MLQCVADMNLSNSY 132 (338)
Q Consensus 73 g~~DvilhK~~~~~~--------------~~~l~~~~~~~p~v~ViDp~~ai~~l~dR~~------~~~~L~~~~l~~~~ 132 (338)
.++|+|+-|+.+. + ...++.|.+. .|.++|++.+- .+.||.. +.+.+-. ..
T Consensus 268 ~~VDVIyRRvdd~-~lDpl~~~~dS~lGv~gLl~A~r~G--~V~i~Na~gsg-v~~dKal~a~Lp~l~~~~lg----Ee- 338 (474)
T 3n6x_A 268 KRVDVIYRRIDDD-FIDPLSFRPDSMLGVPGLLSVYRNG--GVTLANAVGTG-VADDKDTYIYVPEMIRFYLG----EE- 338 (474)
T ss_dssp EEECEEEECSCGG-GSCTTTSCTTCSSSCTTHHHHHHTT--SCEEESCTTTH-HHHSTTTGGGHHHHHHHHHC----SC-
T ss_pred eEEEEEEEcCCHH-hcCccccCCCcccccHHHHHHHHcC--CEEEeCCCchh-hhcCcHHHHHhHHHHHHhCC----Hh-
Confidence 3799999999653 2 2466677654 79999999885 7888852 2222211 11
Q ss_pred CCc-cCCcEEEEecCCCChhHHHHhcCCCCcEEEeeCCCCCCCcceeeEE--EeChhhHhcc-----CCC--eEEEeccc
Q 019600 133 GKV-DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL--AYDQYSLKKL-----EPP--LVLQEFVN 202 (338)
Q Consensus 133 ~~i-~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i--v~~~~~L~~l-----~~p--~vvQeFI~ 202 (338)
.-+ .+|.+... +.++....+.... -+|+||..+. ++.+|.+ -.+.+++.++ ..| +|+||+|.
T Consensus 339 ~il~~VpT~~c~--~~~~~~~vl~~l~---~lViKp~~g~---gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ 410 (474)
T 3n6x_A 339 PILSNVPTYQLS--KADDLKYVLDNLA---ELVVKEVQGS---GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLA 410 (474)
T ss_dssp CSSEECCCEETT--SHHHHHHHHHSGG---GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCC
T ss_pred hhccCCCceecC--CHHHHHHHHhchh---heEEEecCCC---CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccC
Confidence 112 35544321 1222222232222 7999998854 3556654 2334454442 567 99999997
Q ss_pred CC-------C------cEEEEEEE-CCEEEE
Q 019600 203 HG-------G------VLFKVYIV-GEAIKV 219 (338)
Q Consensus 203 h~-------g------~~~KV~VI-Gd~v~~ 219 (338)
-+ | .++|+|++ |+.+.+
T Consensus 411 ls~~P~~~~~~~~~r~~dlR~F~~~g~~~~v 441 (474)
T 3n6x_A 411 LSTCPTLVETGIAPRHVDLRPFVLSGKTVSL 441 (474)
T ss_dssp CCEEEEEETTEEEEEEEEEECEEEESSSEEE
T ss_pred CcccceeeCCceeeeeEEEEEEEEcCCceEE
Confidence 42 2 57788888 654443
No 77
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=86.51 E-value=3.1 Score=40.64 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=59.3
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHH-hcCCC-CcEEEeeCCC-CCCCcceeeEEEeChhhHhcc----
Q 019600 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL-KAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL---- 191 (338)
Q Consensus 119 ~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~-~~~l~-fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l---- 191 (338)
.-.+|.++..... ..+..|++.+++. ..+..++.. ...++ ||+|+|+.+. +|-..+.++.+..+.++..+.
T Consensus 11 ~K~ll~~~~~~~~-~~~~~~~~~~~~~-~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~m 88 (425)
T 3mwd_A 11 GKELLYKFICTTS-AIQNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (425)
T ss_dssp HHHHHHHHCCCSS-CBCSTTCCEEECT-TCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHhccccC-CccCCcceEEeCC-CCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHH
Confidence 3455665532100 1245566777753 333333332 34577 9999999773 234466789898898776542
Q ss_pred -------C------CCeEEEecccCC-CcEEEEEEECCE
Q 019600 192 -------E------PPLVLQEFVNHG-GVLFKVYIVGEA 216 (338)
Q Consensus 192 -------~------~p~vvQeFI~h~-g~~~KV~VIGd~ 216 (338)
. .-+++|++++|+ ++.|-+-+.-|+
T Consensus 89 l~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr 127 (425)
T 3mwd_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (425)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred HhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecC
Confidence 1 138999999985 788877777554
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=69.64 E-value=13 Score=39.40 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHh-cCCC-CcEEEeeCCCC-CCCcceeeEEEeChhhHhcc----
Q 019600 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK-AGLT-LPLVAKPLVAD-GSAKSHELSLAYDQYSLKKL---- 191 (338)
Q Consensus 119 ~~~~L~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~l~~-~~l~-fP~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l---- 191 (338)
--++|.++..+.. ..+..|++.++.. ..+..++... ..|+ +|+|+|+.+.. |-..+.++.+..+.++.++.
T Consensus 11 aK~ll~~~~~~~~-~~~~~~~~~~v~~-~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~i 88 (829)
T 3pff_A 11 GKELLYKFICTTS-AIQNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (829)
T ss_dssp HHHHHHHHCCCSS-CBCSTTCCEEECT-TCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHhCcccc-ccccCCceEEeCC-CCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHH
Confidence 3455666532101 1233567777743 3333333222 2455 89999996643 33456788888898776542
Q ss_pred -----C--------CCeEEEecccCC-CcEEEEEEECCE
Q 019600 192 -----E--------PPLVLQEFVNHG-GVLFKVYIVGEA 216 (338)
Q Consensus 192 -----~--------~p~vvQeFI~h~-g~~~KV~VIGd~ 216 (338)
. .-+++|++++|+ ++.|-+-+.-|+
T Consensus 89 Lg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr 127 (829)
T 3pff_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (829)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred HHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecC
Confidence 1 137999999985 788887777554
No 79
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=49.59 E-value=28 Score=32.77 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=50.6
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+..+.+ +=+... +|..++.++|-.++.++.+..-...| =+|+|..|...+.....+.+|
T Consensus 43 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 119 (333)
T 1duv_G 43 TGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY 119 (333)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCccHHH---HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchHHHHHHHh
Confidence 46788888865 222222 37789999999999999865222222 379999999886555566555
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
. ++||||-.
T Consensus 120 ~----~vPVINa~ 128 (333)
T 1duv_G 120 A----SVPVWNGL 128 (333)
T ss_dssp H----SSCEEESC
T ss_pred C----CCCeEcCC
Confidence 5 79999944
No 80
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=48.08 E-value=34 Score=32.07 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=50.7
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+-.+.+ +=+... +|..++.++|-+++.++.+..-...| =+|+|..|...+.....+.+|
T Consensus 57 ~gk~la~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 133 (325)
T 1vlv_A 57 KGMTLAMIFEKRSTRTRL---AFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEY 133 (325)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEeccCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHHHHHHHHh
Confidence 46788888865 222222 37789999999999999865222222 279999999886555555555
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
. ++||||-.
T Consensus 134 ~----~vPVINa~ 142 (325)
T 1vlv_A 134 S----GVPVYNGL 142 (325)
T ss_dssp H----CSCEEESC
T ss_pred C----CCCEEeCC
Confidence 5 78999944
No 81
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=46.85 E-value=28 Score=32.36 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=49.5
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCCC------------ccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGP------------FDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~------------~DvilhK~~~~~~~~~l~~ 93 (338)
-+..+|+-.+.+. =+... +|..++.++|-+++.++.+..-...|+ +|+|..|...+.....+.
T Consensus 34 L~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA- 109 (307)
T 3tpf_A 34 LQDKTLAMIFEKNSTRTRM---AFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFA- 109 (307)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCHHHHHHHH-
T ss_pred cCCCEEEEEecCCCcchHH---hHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChHHHHHHH-
Confidence 3456788877662 22222 377899999999999998652222332 799999988754433333
Q ss_pred HHHhCCCceeeChHH
Q 019600 94 YRQTHPEVTVLDPPY 108 (338)
Q Consensus 94 ~~~~~p~v~ViDp~~ 108 (338)
++-++||||-..
T Consensus 110 ---~~~~vPVINag~ 121 (307)
T 3tpf_A 110 ---RYSKAPVINALS 121 (307)
T ss_dssp ---HHCSSCEEEEEC
T ss_pred ---HhCCCCEEeCCC
Confidence 345899998543
No 82
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=46.41 E-value=28 Score=32.86 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=48.6
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCCC------------ccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGP------------FDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~------------~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+-.+.+ +=+... +|..++.++|-+++.++.+..-...|+ +|+|..|...+.....+.+
T Consensus 62 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~- 137 (339)
T 4a8t_A 62 KNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLAN- 137 (339)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHHHHHHHHH-
T ss_pred CCceEEEEecCCCchHHH---HHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHH-
Confidence 46788887765 222222 377899999999999988653222232 7999999887544444433
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
+.++||||-.
T Consensus 138 ---~~~vPVINag 147 (339)
T 4a8t_A 138 ---CATIPVINGM 147 (339)
T ss_dssp ---HCSSCEEECC
T ss_pred ---hCCCCEEECC
Confidence 4589999954
No 83
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=45.81 E-value=27 Score=32.86 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=49.4
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+..+.+ +=+... +|..++.++|-.++.++.+..-...| =+|+|..|...+.....+.+
T Consensus 44 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~- 119 (335)
T 1dxh_A 44 KRKNIALIFEKTSTRTRC---AFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK- 119 (335)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHH-
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCChhHHHHHHH-
Confidence 46688888765 222222 37789999999999999875322223 27999999887544444444
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
+.++||||-.
T Consensus 120 ---~s~vPVINa~ 129 (335)
T 1dxh_A 120 ---FAGVPVFNGL 129 (335)
T ss_dssp ---HSSSCEEEEE
T ss_pred ---hCCCCEEcCC
Confidence 3489999944
No 84
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=45.40 E-value=30 Score=32.90 Aligned_cols=73 Identities=12% Similarity=0.007 Sum_probs=49.7
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCCC------------ccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGP------------FDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~------------~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+..+.+ +=+... +|..++.++|-.++.++.+..-...|+ +|+|..|-..+.....+.+|
T Consensus 66 ~Gk~la~lF~e~STRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 142 (359)
T 2w37_A 66 EGKNIALLFEKSSTRTRS---AFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILARD 142 (359)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCccHHH---HHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCChHHHHHHHHh
Confidence 46788888865 222222 377899999999999998753222332 79999998875444444443
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
.++||||-.
T Consensus 143 ----s~vPVINa~ 151 (359)
T 2w37_A 143 ----SGVPVWNGL 151 (359)
T ss_dssp ----SSSCEEEEE
T ss_pred ----CCCCEEcCC
Confidence 489999943
No 85
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=44.07 E-value=29 Score=32.55 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=45.2
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+..+.+. =+... +|..++.++|-+++.++.+..-...| =+|+|..|...+.....+.+|
T Consensus 47 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 123 (323)
T 3gd5_A 47 HGKVLGLVFLKASTRTRV---SFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHY 123 (323)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcchHh---hHHHHHHHcCCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHh
Confidence 456888877662 22222 37789999999999998764211112 379999999886555555554
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
. ++||||-.
T Consensus 124 ~----~vPVINag 132 (323)
T 3gd5_A 124 A----GIPVINAL 132 (323)
T ss_dssp H----CSCEEEEE
T ss_pred C----CCCEEeCC
Confidence 4 78999844
No 86
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=42.77 E-value=30 Score=32.06 Aligned_cols=74 Identities=18% Similarity=0.085 Sum_probs=49.6
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-+..+|+-.+.+ +=+... +|..++.+.|-+++.++.+..-...| =+|+|..|...+.....+.+
T Consensus 43 L~gk~~~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~ 119 (301)
T 2ef0_A 43 LKGKVLALLFEKPSLRTRT---TLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHETVEALAR 119 (301)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEEeccCCcchHH---HHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCChHHHHHHHH
Confidence 356788888865 222222 37789999999999999865222222 27999999987544444443
Q ss_pred HHHhCCCceeeChH
Q 019600 94 YRQTHPEVTVLDPP 107 (338)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (338)
+.+++|||-.
T Consensus 120 ----~~~vPVINa~ 129 (301)
T 2ef0_A 120 ----HAKVPVVNAL 129 (301)
T ss_dssp ----HCSSCEEEEE
T ss_pred ----HCCCCEEeCC
Confidence 4579999943
No 87
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=42.51 E-value=34 Score=32.00 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=49.6
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCCC------------ccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGP------------FDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~------------~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+-.+.+ +=+... +|..++.++|-+++.++.+..-...|+ +|+|..|...+.....+.
T Consensus 45 ~gk~l~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA-- 119 (321)
T 1oth_A 45 QGKSLGMIFEKRSTRTRL---STETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLA-- 119 (321)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHH--
Confidence 56788888865 222222 377899999999999998763222332 799999998754444443
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
++.+++|||-.
T Consensus 120 --~~~~vPVINa~ 130 (321)
T 1oth_A 120 --KEASIPIINGL 130 (321)
T ss_dssp --HHCSSCEEESC
T ss_pred --HhCCCCEEcCC
Confidence 44589999943
No 88
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=42.11 E-value=31 Score=32.72 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=49.3
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-+..+|+-.+.+ +=+... +|..++.++|-+++.++++..-...| =+|+|..|...+.....+.
T Consensus 39 L~gK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA- 114 (355)
T 4a8p_A 39 LKNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLA- 114 (355)
T ss_dssp TTTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSHHHHHHHH-
T ss_pred cCCCEEEEEecCCChhhHh---hHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHH-
Confidence 346788887766 222222 37889999999999998865222222 3899999998754434443
Q ss_pred HHHhCCCceeeChH
Q 019600 94 YRQTHPEVTVLDPP 107 (338)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (338)
++-++||||-.
T Consensus 115 ---~~~~vPVINag 125 (355)
T 4a8p_A 115 ---NCATIPVINGM 125 (355)
T ss_dssp ---HHCSSCEEECC
T ss_pred ---HhCCCCEEeCC
Confidence 34589999954
No 89
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=41.15 E-value=33 Score=32.39 Aligned_cols=73 Identities=10% Similarity=0.077 Sum_probs=46.8
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+-.+.+. =+... +|..++.++|-+++.++.+..-...| =+|+|..|.........+.+
T Consensus 69 ~gK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~- 144 (340)
T 4ep1_A 69 QGKILGLIFDKHSTRTRV---SFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAK- 144 (340)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCHHHHHHHHH-
T ss_pred CCceEEEEecCCCccHHH---HHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHH-
Confidence 456888877652 22222 37789999999999998864222222 27999999887544344433
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
+-++||||-.
T Consensus 145 ---~~~vPVINag 154 (340)
T 4ep1_A 145 ---ESSIPVINGL 154 (340)
T ss_dssp ---HCSSCEEEEE
T ss_pred ---hCCCCEEeCC
Confidence 4589999843
No 90
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=40.58 E-value=83 Score=24.30 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=47.8
Q ss_pred ccccchHHHhhhhhcceEEEE--eeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHh-CCCceeeChHHHHHHhccHHH
Q 019600 42 KSFLQPKLEGLARNKGILFVA--IDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQS 118 (338)
Q Consensus 42 ~~~~~~~l~~~~~~~gi~~~~--id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~-~p~v~ViDp~~ai~~l~dR~~ 118 (338)
.++.-.++.++|+++|+++.. .....--.....+|+||.=-.-......+++.... +-.+.|||+-+-....+|=-.
T Consensus 19 Tsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~g~~ 98 (108)
T 3nbm_A 19 SAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSK 98 (108)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCCHHH
Confidence 456667788999999988766 33443222235699999521111122334443332 224777999877655677666
Q ss_pred HHHHH
Q 019600 119 MLQCV 123 (338)
Q Consensus 119 ~~~~L 123 (338)
.++..
T Consensus 99 vl~~~ 103 (108)
T 3nbm_A 99 ALQFV 103 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 91
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=40.18 E-value=33 Score=31.94 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=48.9
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+-.+.+ +=+... +|..++.++|-+++.++.+..-...| =+|+|..|...+.....+.
T Consensus 45 ~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA-- 119 (315)
T 1pvv_A 45 EGKTLAMIFQKPSTRTRV---SFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLA-- 119 (315)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHHHHHHH--
Confidence 46788888865 222222 37789999999999999765222222 2799999998754444444
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
++.++||||-.
T Consensus 120 --~~~~vPVINa~ 130 (315)
T 1pvv_A 120 --KYATVPVINGL 130 (315)
T ss_dssp --HHCSSCEEEEE
T ss_pred --HhCCCCEEcCC
Confidence 34579999943
No 92
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=38.02 E-value=24 Score=33.64 Aligned_cols=73 Identities=12% Similarity=0.018 Sum_probs=49.2
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+..+.+. =+... +|..++.++|-.++.++++..-...| =+|+|..|-........+.+|
T Consensus 70 ~GK~va~lF~e~STRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 146 (365)
T 4amu_A 70 VGKNIAILFQKDSTRTRC---AFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFAQSDVDALVKY 146 (365)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHHTCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHH
T ss_pred CCceEEEEecCCCchHHH---HHHHHHHhCCCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecCChhHHHHHHHh
Confidence 457888877662 22222 37789999999999998754222222 279999998876555555555
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
. ++||||-.
T Consensus 147 s----~vPVINa~ 155 (365)
T 4amu_A 147 S----GVPVWNGL 155 (365)
T ss_dssp H----CSCEEEEE
T ss_pred C----CCCEEeCC
Confidence 4 79999953
No 93
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=37.30 E-value=46 Score=28.82 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=24.9
Q ss_pred CCCceEEEEEEeccc-ccccc---cchHHHhhhhhcceEEEEeeCC
Q 019600 25 QQSKLVVVGYALTSK-KTKSF---LQPKLEGLARNKGILFVAIDQN 66 (338)
Q Consensus 25 ~~~~~~~VGy~l~~k-K~~~~---~~~~l~~~~~~~gi~~~~id~~ 66 (338)
.+.+..+||+.++.. -...| ....+.++|+++|+++...+..
T Consensus 15 ~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 60 (296)
T 3brq_A 15 SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK 60 (296)
T ss_dssp ----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred hcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445567999998762 11222 2344667888999998877654
No 94
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=36.70 E-value=40 Score=31.26 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=65.3
Q ss_pred HHHHHH---HhhhhhccCCCcccCCCceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC-------
Q 019600 5 KEEIEE---QTREEELLSFPQTQQQSKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------- 73 (338)
Q Consensus 5 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------- 73 (338)
++||.+ .|.++... .. ...-+..+|+-.+.+. =+... +|..++.++|-..+.++++..-...|
T Consensus 12 ~~ei~~ll~~A~~lk~~-~~--~~~L~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTa 85 (304)
T 3r7f_A 12 TEEIKDLLQTAQELKSG-KT--DNQLTGKFAANLFFEPSTRTRF---SFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTI 85 (304)
T ss_dssp HHHHHHHHHHHHHHHTT-CC--CCTTTTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CC--CccCCCCEEEEEecCCChhHHH---hHHHHHHHCCCeEEEECcccccCCCCCCHHHHH
Confidence 456654 45555432 11 1223466788877662 22222 37889999999999999865323233
Q ss_pred ------CccEEEEccCchhHHHHHHHHHHhCCCceeeChHH-----HHHHhccHHHHHHHH
Q 019600 74 ------PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY-----AIQHLHNRQSMLQCV 123 (338)
Q Consensus 74 ------~~DvilhK~~~~~~~~~l~~~~~~~p~v~ViDp~~-----ai~~l~dR~~~~~~L 123 (338)
.+|+|..|...+.....+. ++.++||||-.+ -.+.+.|=+.+.+.+
T Consensus 86 rvLs~~~~D~iviR~~~~~~~~~la----~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~ 142 (304)
T 3r7f_A 86 RTLESIGVDVCVIRHSEDEYYEELV----SQVNIPILNAGDGCGQHPTQSLLDLMTIYEEF 142 (304)
T ss_dssp HHHHHHTCCEEEEECSSTTCHHHHH----HHCSSCEEESCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEecCChhHHHHHH----HhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHh
Confidence 2699999998754444444 345899998653 244455545555443
No 95
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=36.53 E-value=45 Score=31.55 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=48.3
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCCC------------ccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGP------------FDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~------------~DvilhK~~~~~~~~~l~~~ 94 (338)
...+|+-.+.+ +=+.+. +|..++.++|-+++.++.+..-...|+ +|+|..|...+.....+
T Consensus 69 ~GK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~l--- 142 (358)
T 4h31_A 69 LGKNIALIFEKASTRTRC---AFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQAIVEEL--- 142 (358)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHH---
T ss_pred CCCEEEEEeCCCChhhHH---HHHHHHHHcCCeEEECCcccccccCccchhHHHHHhhccCceeEecccchhHHHHh---
Confidence 35678888876 333332 277799999999999988763333332 79999998875433333
Q ss_pred HHhCCCceeeC
Q 019600 95 RQTHPEVTVLD 105 (338)
Q Consensus 95 ~~~~p~v~ViD 105 (338)
+++.++||||
T Consensus 143 -a~~s~vPVIN 152 (358)
T 4h31_A 143 -GAFAGVPVWN 152 (358)
T ss_dssp -HHHSSSCEEE
T ss_pred -hhhccCceEC
Confidence 3445899999
No 96
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=36.39 E-value=32 Score=31.91 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=49.1
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCCC------------ccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGP------------FDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~------------~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+-.+.+ +=+... +|..++.++|-+++.++.+..-...|+ +|+|..|...+.....+.
T Consensus 38 ~gk~l~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA-- 112 (307)
T 2i6u_A 38 GPRGVAVIFDKNSTRTRF---SFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAMA-- 112 (307)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSSHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHH--
Confidence 46788888865 222222 377899999999999998652222232 799999988754444443
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
++.+++|||-.
T Consensus 113 --~~~~vPVINa~ 123 (307)
T 2i6u_A 113 --SVATVPVINAL 123 (307)
T ss_dssp --HHCSSCEEESC
T ss_pred --hhCCCCEEcCC
Confidence 34579999943
No 97
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=36.11 E-value=48 Score=30.67 Aligned_cols=90 Identities=9% Similarity=0.157 Sum_probs=55.9
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeC-CCCCCcCCC------------ccEEEEccCchhHHHHHH
Q 019600 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQ-NRPLSDQGP------------FDIVLHKLTGKEWRQILE 92 (338)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~-~~~l~~qg~------------~DvilhK~~~~~~~~~l~ 92 (338)
-+..+|+..+.+. =+... +|..++.++|-+.+.++. +..-...|+ +|+|..|...+.....+.
T Consensus 38 L~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA 114 (306)
T 4ekn_B 38 LEGKILATVFYEPSTRTRL---SFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLAS 114 (306)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHHCSEEEEECSSTTHHHHHH
T ss_pred cCCceEEEEEcCCChhHHh---hHHHHHHHcCCEEEEcCCcccccCCCCCCHHHHHHHHHHhCcEEEEEcCChHHHHHHH
Confidence 3467888887762 22222 377899999999999986 432222222 699999988754444333
Q ss_pred HHHHhCCCceeeChHH-----HHHHhccHHHHHHHH
Q 019600 93 EYRQTHPEVTVLDPPY-----AIQHLHNRQSMLQCV 123 (338)
Q Consensus 93 ~~~~~~p~v~ViDp~~-----ai~~l~dR~~~~~~L 123 (338)
++.++||||-.+ =.+.+.|=+.+.+.+
T Consensus 115 ----~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~ 146 (306)
T 4ekn_B 115 ----EYSQVPIINAGDGSNQHPTQTLLDLYTIMREI 146 (306)
T ss_dssp ----HHCSSCEEESCSSSSCCHHHHHHHHHHHHHHH
T ss_pred ----HhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHh
Confidence 345899998643 244555545555543
No 98
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=35.29 E-value=36 Score=30.03 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=26.4
Q ss_pred HHHHHHhhhhhccCCCcccCCCceEEEEEEecccc----cccc---cchHHHhhhhhcceEEEEeeCCC
Q 019600 6 EEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKK----TKSF---LQPKLEGLARNKGILFVAIDQNR 67 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK----~~~~---~~~~l~~~~~~~gi~~~~id~~~ 67 (338)
+|++|+-. ..+.+..+.+..+||+.++... ...| ....+.++|+++|+.+...+...
T Consensus 4 ~elgY~pn-----~~Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 67 (305)
T 3huu_A 4 SKLGYIPN-----QAARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSEN 67 (305)
T ss_dssp ----------------------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSS
T ss_pred HHhCCCcC-----HHHHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56777632 1222234556789999988721 1112 22346678899999998776543
No 99
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=34.73 E-value=1.2e+02 Score=23.05 Aligned_cols=81 Identities=23% Similarity=0.237 Sum_probs=45.8
Q ss_pred ccccchHHHhhhhhcceE--EEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHH-hCCCceeeChHHHHHHhccHHH
Q 019600 42 KSFLQPKLEGLARNKGIL--FVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQ-THPEVTVLDPPYAIQHLHNRQS 118 (338)
Q Consensus 42 ~~~~~~~l~~~~~~~gi~--~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~-~~p~v~ViDp~~ai~~l~dR~~ 118 (338)
.|+...++.++++++|++ +...+...--.....+|+||.=..-......+++... .+-.+.+|||..-. ..|...
T Consensus 17 TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~ 94 (109)
T 2l2q_A 17 TSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEK 94 (109)
T ss_dssp SCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHH
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHH
Confidence 346667888999999975 4445554411123578999843221112233333322 23456779998774 467666
Q ss_pred HHHHHH
Q 019600 119 MLQCVA 124 (338)
Q Consensus 119 ~~~~L~ 124 (338)
.++.+.
T Consensus 95 vl~~i~ 100 (109)
T 2l2q_A 95 VLQLAI 100 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 100
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=33.88 E-value=41 Score=31.20 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=48.2
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHHH
Q 019600 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEEY 94 (338)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~~ 94 (338)
+..+|+-.+.+- =+... +|..++.++|-+++.++.+..-...| =+|+|..|...+.....
T Consensus 44 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~---- 116 (309)
T 4f2g_A 44 HDRTLAMIFEKSSTRTRL---SFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQDIIQR---- 116 (309)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSCHHHHHH----
T ss_pred CCceEEEEecCCChhhHh---hHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCHHHHHH----
Confidence 456788887662 22222 37779999999999998864211122 27999999887533222
Q ss_pred HHhCCCceeeChH
Q 019600 95 RQTHPEVTVLDPP 107 (338)
Q Consensus 95 ~~~~p~v~ViDp~ 107 (338)
.+++.++||||-.
T Consensus 117 lA~~~~vPVINag 129 (309)
T 4f2g_A 117 FAENSRVPVINGL 129 (309)
T ss_dssp HHHTCSSCEEEEE
T ss_pred HHHhCCCCEEECC
Confidence 3356689999944
No 101
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=33.23 E-value=55 Score=30.96 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=48.0
Q ss_pred CceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCCCCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 27 SKLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 27 ~~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
-+..+|+-.+.+. =+... +|..++.++|-+++.++.+..-...| =+|+|+.|...+.....+
T Consensus 64 L~gk~va~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~l-- 138 (353)
T 3sds_A 64 LSGKTVAMMFSKRSTRTRV---STEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSDIANL-- 138 (353)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSHHHHHHH--
T ss_pred cCCCEEEEEecCCchhHHH---HHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCChHHHHHH--
Confidence 3467888888763 22222 37789999999999887765222222 379999998764333333
Q ss_pred HHHhCCCceeeChH
Q 019600 94 YRQTHPEVTVLDPP 107 (338)
Q Consensus 94 ~~~~~p~v~ViDp~ 107 (338)
+++.+++|||-.
T Consensus 139 --A~~s~vPVINag 150 (353)
T 3sds_A 139 --AKHSSVPVINAL 150 (353)
T ss_dssp --HHHCSSCEEEEE
T ss_pred --HhhCCCCEEECC
Confidence 345689999864
No 102
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=32.34 E-value=47 Score=30.69 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=54.2
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCC-CCcCC------------CccEEEEccCchhHHHHHHH
Q 019600 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRP-LSDQG------------PFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~-l~~qg------------~~DvilhK~~~~~~~~~l~~ 93 (338)
+..+|+-.+.+. =+... +|..++.++|-+++.++.... -...| =+|+|..|...+.....+.+
T Consensus 37 ~gk~~~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~ 113 (299)
T 1pg5_A 37 SGKTISIAFFEPSTRTYL---SFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYDGASRFASE 113 (299)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHHCSEEEEEESSBTHHHHHHH
T ss_pred CCCEEEEEecCCCcchHH---hHHHHHHHhCCEEEEeCCCCcccccCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHHH
Confidence 456888888762 22222 377899999999999987652 11222 27999999877544444443
Q ss_pred HHHhCCCceeeCh-H----HHHHHhccHHHHHHHH
Q 019600 94 YRQTHPEVTVLDP-P----YAIQHLHNRQSMLQCV 123 (338)
Q Consensus 94 ~~~~~p~v~ViDp-~----~ai~~l~dR~~~~~~L 123 (338)
+.++||||- . .=.+.+.|=+.+.+..
T Consensus 114 ----~~~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~ 144 (299)
T 1pg5_A 114 ----ISDIPVINAGDGKHEHPTQAVIDIYTINKHF 144 (299)
T ss_dssp ----HCSSCEEEEEETTTBCHHHHHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCCCCcCcHHHHHHHHHHHHHh
Confidence 458999995 2 2234445545555543
No 103
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=31.41 E-value=42 Score=31.41 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=47.8
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCc------------CCC------------ccEEEEcc
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------QGP------------FDIVLHKL 82 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~------------qg~------------~DvilhK~ 82 (338)
+..+|+-.+.+ +=+... +|..++.++|-+++.++.+..-.. .|+ +|+|..|.
T Consensus 35 ~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~IviR~ 111 (324)
T 1js1_X 35 RNKTLLMIFFNSSLRTRL---STQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRS 111 (324)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSEEEEEC
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcEEEEec
Confidence 56788888876 222222 378899999999999998652222 232 79999998
Q ss_pred Cc----hhH--HHHHHHHHHhCCCceeeChH
Q 019600 83 TG----KEW--RQILEEYRQTHPEVTVLDPP 107 (338)
Q Consensus 83 ~~----~~~--~~~l~~~~~~~p~v~ViDp~ 107 (338)
.. ..+ .+...+..+++.+++|||-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~lA~~~~vPVINa~ 142 (324)
T 1js1_X 112 FARFENREYDYNEVIINQFIQHSGRPVFSME 142 (324)
T ss_dssp CCCSSCHHHHHHTHHHHHHHHHSSSCEEESS
T ss_pred ccccccccccccchHHHHHHhhCCCCEEECC
Confidence 71 100 11122223345689999944
No 104
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=31.23 E-value=1.6e+02 Score=26.08 Aligned_cols=59 Identities=5% Similarity=0.085 Sum_probs=33.0
Q ss_pred HHHHHHHhhhhhccCCCcccCCCceEEEEEEecccccccc---cchHHHhhhhhcceEEEEe
Q 019600 5 KEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAI 63 (338)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK~~~~---~~~~l~~~~~~~gi~~~~i 63 (338)
++.|.+-++++.--..+.+..+.+..+||+.++..-...| ....+.++|+++|+++...
T Consensus 19 r~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 80 (342)
T 1jx6_A 19 RNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLN 80 (342)
T ss_dssp HHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3444555555544322222245667899999875111222 2334667888899876554
No 105
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=30.79 E-value=26 Score=27.06 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=41.6
Q ss_pred ccccchHHHhhhhhcceEE--EEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHh--CCCceeeChHHHHHHhccHH
Q 019600 42 KSFLQPKLEGLARNKGILF--VAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQT--HPEVTVLDPPYAIQHLHNRQ 117 (338)
Q Consensus 42 ~~~~~~~l~~~~~~~gi~~--~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~--~p~v~ViDp~~ai~~l~dR~ 117 (338)
.|+...++.++++++|+++ ...+...--.....+|+||.= . +....+.++.+. .-+++|||+..-. .+|--
T Consensus 16 TS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~--p-qv~~~~~~~~~~~~~~~v~vI~~~~yg--~~~g~ 90 (106)
T 1e2b_A 16 TSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLG--P-QIAYMLPEIQRLLPNKPVEVIDSLLYG--KVDGL 90 (106)
T ss_dssp THHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEEC--T-TSGGGHHHHHHHSSSSCCCBCCHHHHT--TTCTT
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEc--c-chhhhHHHHHHHhcCCCceEECHHHcc--CCCHH
Confidence 3466667888999999764 444554422223468999932 2 222333333331 1369999977653 24544
Q ss_pred HHH
Q 019600 118 SML 120 (338)
Q Consensus 118 ~~~ 120 (338)
..+
T Consensus 91 ~vl 93 (106)
T 1e2b_A 91 GVL 93 (106)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 106
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.25 E-value=88 Score=26.98 Aligned_cols=64 Identities=9% Similarity=0.088 Sum_probs=40.4
Q ss_pred ceEEEEEEecccccccc---cchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019600 28 KLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (338)
Q Consensus 28 ~~~~VGy~l~~kK~~~~---~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~~~~~~~~l~~~~~~~p~v~Vi 104 (338)
+..+||+.++.-- ..| ....+.++|+++|+++...+.... .......++.+.....+.+++
T Consensus 4 ~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~~~~~~~~~l~~~~vdgiIi 67 (291)
T 3l49_A 4 EGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGRN---------------DQTQVSQIQTLIAQKPDAIIE 67 (291)
T ss_dssp TTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTTC---------------HHHHHHHHHHHHHHCCSEEEE
T ss_pred CCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEEcCCCC---------------HHHHHHHHHHHHHcCCCEEEE
Confidence 4678999998643 222 234577789999999988865431 112334556666666666666
Q ss_pred ChH
Q 019600 105 DPP 107 (338)
Q Consensus 105 Dp~ 107 (338)
-|.
T Consensus 68 ~~~ 70 (291)
T 3l49_A 68 QLG 70 (291)
T ss_dssp ESS
T ss_pred eCC
Confidence 554
No 107
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.66 E-value=92 Score=26.75 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCceEEEEEEeccccc--ccccchHHHhhhhhcceEEEEeeCCC
Q 019600 26 QSKLVVVGYALTSKKT--KSFLQPKLEGLARNKGILFVAIDQNR 67 (338)
Q Consensus 26 ~~~~~~VGy~l~~kK~--~~~~~~~l~~~~~~~gi~~~~id~~~ 67 (338)
+.+..+||+.++.-.- -.-....+.++|+++|+++...+...
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 47 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA 47 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4567899999976431 11123446678899999998877653
No 108
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=29.63 E-value=1.6e+02 Score=23.72 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=26.0
Q ss_pred ceEEEEEEecccccc----cccchH--HHhhhhhcceEEEE--eeC
Q 019600 28 KLVVVGYALTSKKTK----SFLQPK--LEGLARNKGILFVA--IDQ 65 (338)
Q Consensus 28 ~~~~VGy~l~~kK~~----~~~~~~--l~~~~~~~gi~~~~--id~ 65 (338)
...+++|+=-..+.+ ++..|. +.++|+++|++++. .|.
T Consensus 4 ~~r~~~Y~RvSt~~q~~~~sl~~Q~~~l~~~a~~~g~~i~~~~~D~ 49 (167)
T 3guv_A 4 KIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDA 49 (167)
T ss_dssp CCEEEEEEECSSCHHHHGGGHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CcEEEEEEEECCcccccCCCHHHHHHHHHHHHHhCCCEEEEEEeec
Confidence 356899987665544 666554 67789999988753 454
No 109
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=27.50 E-value=1.5e+02 Score=28.68 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=41.0
Q ss_pred EEEeeCCCCCCCcceeeEEEeChhhHhccC----------------CCeEEEecccCC----C--cEEEEEEECCEEEEE
Q 019600 163 LVAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHG----G--VLFKVYIVGEAIKVV 220 (338)
Q Consensus 163 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~vvQeFI~h~----g--~~~KV~VIGd~v~~~ 220 (338)
+|+|-.. |+ .+-|+..|.+.+++..++ ..+++||=|.+- + -.-=||+||.+|++.
T Consensus 280 V~VKADa--GT-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvGg 356 (432)
T 3k1t_A 280 VIVKADA--GT-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVVGG 356 (432)
T ss_dssp EEEEEEC--GG-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 5889544 55 677778888988887752 238999988763 1 133589999998876
Q ss_pred -EEe
Q 019600 221 -RRF 223 (338)
Q Consensus 221 -~R~ 223 (338)
.|.
T Consensus 357 FyRv 360 (432)
T 3k1t_A 357 FYRV 360 (432)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 444
No 110
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=27.24 E-value=44 Score=30.97 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=54.3
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCC--CCc-----------CCCccEEEEccCchhHHHHHHH
Q 019600 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRP--LSD-----------QGPFDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~--l~~-----------qg~~DvilhK~~~~~~~~~l~~ 93 (338)
+..+|+-.+.+. =+... +|..++.++|-+++.++.... +.. ..=+|+|..|...+.....+
T Consensus 43 ~gk~l~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~l-- 117 (308)
T 1ml4_A 43 KGKILATLFFEPSTRTRL---SFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLA-- 117 (308)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEESCGGGSGGGGTCCHHHHHHHHTTTCSEEEEEESSTTHHHHH--
T ss_pred CCCEEEEEecCCCchHHH---HHHHHHHHhCCeEEEeCCCccccccCCCCHHHHHHHHHHhCcEEEEecCChhHHHHH--
Confidence 456788877652 22222 378899999999999987641 121 11379999998775443333
Q ss_pred HHHhCCCceeeChHHH-----HHHhccHHHHHH
Q 019600 94 YRQTHPEVTVLDPPYA-----IQHLHNRQSMLQ 121 (338)
Q Consensus 94 ~~~~~p~v~ViDp~~a-----i~~l~dR~~~~~ 121 (338)
+++.++||||-... .+.+.|=+.+.+
T Consensus 118 --a~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e 148 (308)
T 1ml4_A 118 --AEVAEVPVINAGDGSNQHPTQTLLDLYTIKK 148 (308)
T ss_dssp --HHTCSSCEEEEEETTSCCHHHHHHHHHHHHH
T ss_pred --HHhCCCCEEeCccCCccCcHHHHHHHHHHHH
Confidence 35668999996541 344445444444
No 111
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.28 E-value=1.4e+02 Score=25.47 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=34.7
Q ss_pred CceEEEEEEecccccc--cccchHHHhhhhhcceEEEEeeCCCCCCc---------CCCccEEE
Q 019600 27 SKLVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVL 79 (338)
Q Consensus 27 ~~~~~VGy~l~~kK~~--~~~~~~l~~~~~~~gi~~~~id~~~~l~~---------qg~~Dvil 79 (338)
.+..+||+.++.-.-. .-....+.++|+++|+++...+.+ .... ...+|.||
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 3567899998763311 112334667889999999998887 4433 24788888
No 112
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=24.96 E-value=60 Score=30.36 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=51.2
Q ss_pred CceEEEEEEecc-cccccccchHHHhhhhhcceEEEE--eeCCCCCCc-----------CCCccEEEEccCchhHHHHHH
Q 019600 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVA--IDQNRPLSD-----------QGPFDIVLHKLTGKEWRQILE 92 (338)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~--id~~~~l~~-----------qg~~DvilhK~~~~~~~~~l~ 92 (338)
-+..+|+..+.+ +=+... +|..++.++|-+++. ++.+..+.. ..=+|+|..|...+.....+.
T Consensus 42 L~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~~~l~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA 118 (328)
T 3grf_A 42 AANKTLLAFFAKPSLRTRV---SLETAMTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRMVDICTARLATKEMMREMA 118 (328)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHHTCEEEEEEC----------CHHHHHHHHTTTCSEEEEECSSHHHHHHHH
T ss_pred cCCCEEEEEecCCCchHHH---HHHHHHHHCCCeEEccccCccccCCCCCCHHHHHHHHHhhCCEEEEecCChhHHHHHH
Confidence 345788888766 222222 377799999999998 665111111 113799999998754444443
Q ss_pred HHHHhCCCceeeChHHH----HHHhccHHHHHHHH
Q 019600 93 EYRQTHPEVTVLDPPYA----IQHLHNRQSMLQCV 123 (338)
Q Consensus 93 ~~~~~~p~v~ViDp~~a----i~~l~dR~~~~~~L 123 (338)
++-++||||-... .+.|.|=+.+.+..
T Consensus 119 ----~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~ 149 (328)
T 3grf_A 119 ----QHASVPCINALDDFGHPLQMVCDFMTIKEKF 149 (328)
T ss_dssp ----HHCSSCEEESSCSSCCHHHHHHHHHHHHHHH
T ss_pred ----HhCCCCEEeCCCCCCCcHHHHHHHHHHHHHh
Confidence 3458999984432 23334445555544
No 113
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=24.73 E-value=42 Score=30.92 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=46.5
Q ss_pred ceEEEEEEecc-cccccccchHHHhhhhhcceEEEEeeCCCCCCcCCC-------------ccEEEEccCchhHHHHHHH
Q 019600 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGP-------------FDIVLHKLTGKEWRQILEE 93 (338)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~-------------~DvilhK~~~~~~~~~l~~ 93 (338)
+..+| -.+.+ +=+... +|..++.+.|-+++.++.+..-...|+ +|+|..|...+.....+
T Consensus 34 ~gk~~-~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~~D~iviR~~~~~~~~~~-- 107 (291)
T 3d6n_B 34 KASAV-LFFSEPSTRTRL---SFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFVFFPYKE-- 107 (291)
T ss_dssp CCEEE-EEESSCCHHHHH---HHHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHHHHHHTTCSEEEEEESSCCCSCHH--
T ss_pred CCCEE-EEecCCCccHHH---HHHHHHHHhCCeEEEECCccCcccCCCcHHHHHHHHHHhcCCEEEEEcCChHHHHHH--
Confidence 45677 66655 222222 377899999999999998763333332 59999998764332330
Q ss_pred HHHhCCCceeeC
Q 019600 94 YRQTHPEVTVLD 105 (338)
Q Consensus 94 ~~~~~p~v~ViD 105 (338)
.+++.++||||
T Consensus 108 -la~~~~vPVIN 118 (291)
T 3d6n_B 108 -IVKSLNLRLVN 118 (291)
T ss_dssp -HHHTCSSEEEE
T ss_pred -HHHhCCCCEEe
Confidence 33556899999
No 114
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=24.73 E-value=56 Score=30.31 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=55.8
Q ss_pred ceEEEEEEeccc-ccccccchHHHhhhhhcceEEEEeeCCCC---CCc-----------CCCccEEEEccCchhHHHHHH
Q 019600 28 KLVVVGYALTSK-KTKSFLQPKLEGLARNKGILFVAIDQNRP---LSD-----------QGPFDIVLHKLTGKEWRQILE 92 (338)
Q Consensus 28 ~~~~VGy~l~~k-K~~~~~~~~l~~~~~~~gi~~~~id~~~~---l~~-----------qg~~DvilhK~~~~~~~~~l~ 92 (338)
+..+|+-.+.+. =+... +|..++.++|-+++.++.... +.. ..=+|+|..|...+.....+.
T Consensus 40 ~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~~~S~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la 116 (310)
T 3csu_A 40 KHKVIASCFFEASTRTRL---SFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLAT 116 (310)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHTTTCEEEEESCC-----CCSHHHHHHHHHHHTTTCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEEecCCCccHHH---HHHHHHHHhCCeEEEeCCCccchhhccCCcHHHHHHHHHHhCCEEEEECCChhHHHHHH
Confidence 466888887763 22222 378899999999999987763 221 123799999988754444443
Q ss_pred HHHHhCCCceeeChHH-----HHHHhccHHHHHHHH
Q 019600 93 EYRQTHPEVTVLDPPY-----AIQHLHNRQSMLQCV 123 (338)
Q Consensus 93 ~~~~~~p~v~ViDp~~-----ai~~l~dR~~~~~~L 123 (338)
+|. +++||||-.. =.+.+.|=+.+.+..
T Consensus 117 ~~~---~~vPVINag~G~~~HPtQaLaDl~Ti~e~~ 149 (310)
T 3csu_A 117 EFS---GNVPVLNAGDGSNQHPTQTLLDLFTIQETQ 149 (310)
T ss_dssp HHC---TTCCEEEEEETTSCCHHHHHHHHHHHHHHH
T ss_pred Hhc---CCCCEEcCccCCCCCchHHHHHHHHHHHHh
Confidence 332 3899999654 244555545555543
No 115
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.73 E-value=94 Score=26.80 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=25.9
Q ss_pred CCceEEEEEEeccccccc--ccchHHHhhhhhcceEEEEeeCCC
Q 019600 26 QSKLVVVGYALTSKKTKS--FLQPKLEGLARNKGILFVAIDQNR 67 (338)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~--~~~~~l~~~~~~~gi~~~~id~~~ 67 (338)
+.+..+||+.++.-.-.- -....+.++|+++|+++...+.+.
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 48 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN 48 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 445789999997643111 123446778899999998877653
No 116
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=23.99 E-value=52 Score=32.44 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=20.6
Q ss_pred CCcEeEEEEEEeCCCCCeEEEEeccC
Q 019600 282 GLRLFNLDIIREHGTRDQFYVIDINY 307 (338)
Q Consensus 282 Gl~l~GvDvi~~~~~g~~~~ViDVN~ 307 (338)
=+.++|+|++++. +| +++|+|-|.
T Consensus 141 ~~~i~~~Dl~r~~-dG-~~~vlEdn~ 164 (474)
T 3n6x_A 141 YAHIAGVDLVRTG-EN-DFYVLEDNL 164 (474)
T ss_dssp SCSEEEEEEEECS-SS-CEEEEEEEC
T ss_pred EEEEEEEEEEECC-CC-CEEEEEeCC
Confidence 4789999999985 46 799999997
No 117
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=22.98 E-value=20 Score=27.11 Aligned_cols=19 Identities=26% Similarity=0.842 Sum_probs=15.8
Q ss_pred EecccCC--CcEEEEEEECCE
Q 019600 198 QEFVNHG--GVLFKVYIVGEA 216 (338)
Q Consensus 198 QeFI~h~--g~~~KV~VIGd~ 216 (338)
+.|+||+ |-+|+|..+|+.
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-C
T ss_pred cccccCCccchhheeeeCCCc
Confidence 5699998 999999999883
No 118
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=22.33 E-value=3.1e+02 Score=24.31 Aligned_cols=63 Identities=8% Similarity=0.085 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhccCCCcc--cCCCceEEEEEEecccccccc--cchHHHhhhhhcceEEEEeeCCC
Q 019600 5 KEEIEEQTREEELLSFPQT--QQQSKLVVVGYALTSKKTKSF--LQPKLEGLARNKGILFVAIDQNR 67 (338)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~VGy~l~~kK~~~~--~~~~l~~~~~~~gi~~~~id~~~ 67 (338)
++.|.+-++++.--..+.+ ..+.+..+||+.++.-.-.-| ....+.++|+++|+.+...+...
T Consensus 42 r~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 108 (344)
T 3kjx_A 42 RARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDY 108 (344)
T ss_dssp HHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4455566666655433322 245567899999876331111 22346678889999998776654
No 119
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=21.14 E-value=3.3e+02 Score=23.08 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=43.9
Q ss_pred CCceEEEEEEecccccccc---cchHHHhhhhhcceEEEEeeCCCCCCcCC--CccEEEEccCchhHHHHHHHHHHhCCC
Q 019600 26 QSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQG--PFDIVLHKLTGKEWRQILEEYRQTHPE 100 (338)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~~---~~~~l~~~~~~~gi~~~~id~~~~l~~qg--~~DvilhK~~~~~~~~~l~~~~~~~p~ 100 (338)
+.+..+||+.++.-. ..| ....+.++|+++|+++...+.+.....+. .+|.||.-..+.. ...+....+..-.
T Consensus 5 ~~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l~~~~iP 82 (277)
T 3cs3_A 5 RRQTNIIGVYLADYG-GSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP-TKEIEKFAERGHS 82 (277)
T ss_dssp CCCCCEEEEEECSSC-TTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECTTSC-HHHHHHHHHTTCE
T ss_pred ccCCcEEEEEecCCC-ChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEecCCCC-HHHHHHHHhcCCC
Confidence 345678999987532 112 22346678899999998877654333322 6888776443211 1233333333223
Q ss_pred ceeeCh
Q 019600 101 VTVLDP 106 (338)
Q Consensus 101 v~ViDp 106 (338)
++++|.
T Consensus 83 vV~~~~ 88 (277)
T 3cs3_A 83 IVVLDR 88 (277)
T ss_dssp EEESSS
T ss_pred EEEEec
Confidence 555553
No 120
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.65 E-value=1.8e+02 Score=25.02 Aligned_cols=82 Identities=11% Similarity=0.162 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhccCCCcccCCCceEEEEEEecccccc--cccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccC
Q 019600 6 EEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT 83 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~VGy~l~~kK~~--~~~~~~l~~~~~~~gi~~~~id~~~~l~~qg~~DvilhK~~ 83 (338)
+|++|+.. ..+.+..+.+..+||+.++.-.-. .-....+.++|+++|+++...+....
T Consensus 2 ~elgY~pn-----~~Ar~L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~--------------- 61 (293)
T 2iks_A 2 HEHNYHPN-----AVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ--------------- 61 (293)
T ss_dssp ---------------------CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTC---------------
T ss_pred cccCCccC-----HHHHHhhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCC---------------
Confidence 56777532 112223345677999998752211 11223456688889998876654321
Q ss_pred chhHHHHHHHHHHhCCCceeeChH
Q 019600 84 GKEWRQILEEYRQTHPEVTVLDPP 107 (338)
Q Consensus 84 ~~~~~~~l~~~~~~~p~v~ViDp~ 107 (338)
.....+.++.+.....+.+++-|.
T Consensus 62 ~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 62 PDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 112234555666666666666554
No 121
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=20.08 E-value=1.6e+02 Score=27.39 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=44.3
Q ss_pred CCCceEEEEEEecccc-cccccc---hHHHhhhhhcc--eEEEEeeCCCCCCc---------CCCccEEEEccCchhHHH
Q 019600 25 QQSKLVVVGYALTSKK-TKSFLQ---PKLEGLARNKG--ILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQ 89 (338)
Q Consensus 25 ~~~~~~~VGy~l~~kK-~~~~~~---~~l~~~~~~~g--i~~~~id~~~~l~~---------qg~~DvilhK~~~~~~~~ 89 (338)
.+.+.++||+..+... -++|.+ ..+.+++++.| +++..++....-.+ +..+|+|+- ++-....
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~--~g~~~~~ 99 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFT--TSFGYMD 99 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE--CSGGGHH
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE--CCHHHHH
Confidence 3456789999996433 245654 44677888899 99887776432111 134777763 2222334
Q ss_pred HHHHHHHhCCCcee
Q 019600 90 ILEEYRQTHPEVTV 103 (338)
Q Consensus 90 ~l~~~~~~~p~v~V 103 (338)
.+.+.++++|++++
T Consensus 100 ~~~~vA~~~Pdv~f 113 (356)
T 3s99_A 100 PTVKVAKKFPDVKF 113 (356)
T ss_dssp HHHHHHTTCTTSEE
T ss_pred HHHHHHHHCCCCEE
Confidence 55666667777543
No 122
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=20.07 E-value=2e+02 Score=25.37 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=24.1
Q ss_pred CCceEEEEEEeccccccccc---chHHHhhhhhc-ceEEEEeeCC
Q 019600 26 QSKLVVVGYALTSKKTKSFL---QPKLEGLARNK-GILFVAIDQN 66 (338)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~~~---~~~l~~~~~~~-gi~~~~id~~ 66 (338)
+.+..+||+.++. ...|. ...+.++|+++ |+++...+..
T Consensus 3 ~~~~~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~ 45 (325)
T 2x7x_A 3 DTPHFRIGVAQCS--DDSWRHKMNDEILREAMFYNGVSVEIRSAG 45 (325)
T ss_dssp ---CCEEEEEESC--CSHHHHHHHHHHHHHHTTSSSCEEEEEECT
T ss_pred CCCCeEEEEEecC--CCHHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4456799998876 33232 23355677888 9988777654
Done!