RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019600
(338 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 330 bits (847), Expect = e-113
Identities = 103/330 (31%), Positives = 164/330 (49%), Gaps = 17/330 (5%)
Query: 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT 83
Q K VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 13 QTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLT 72
Query: 84 ------------GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
E +EY HPE VLDP AI+ L +R + + +
Sbjct: 73 DVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYME 132
Query: 132 YGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK 190
++ P + + ++ K GLT P + K VA G+ SHE+++ ++Q L
Sbjct: 133 DDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNA 191
Query: 191 LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 250
++PP V+Q F+NH VL+KV++VGE+ VV+R SL + + + F VS +
Sbjct: 192 IQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPES 251
Query: 251 SADDADLDPC--VAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYF 308
S+ +LD V E P ++ L++ LR+ LG+ LF +DII + T Q VIDIN F
Sbjct: 252 SSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAF 310
Query: 309 PGYGKMPEYEHIFTDFLLSLTQSRYKKKSC 338
PGY + E+ + + ++ Q + +
Sbjct: 311 PGYEGVSEFFTDLLNHIATVLQGQSTAMAA 340
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 303 bits (777), Expect = e-102
Identities = 60/327 (18%), Positives = 127/327 (38%), Gaps = 26/327 (7%)
Query: 23 TQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKL 82
+ + V + L K K+ + + + L D+ P I+ +
Sbjct: 5 SMTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRT 64
Query: 83 TGK-EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL 141
+ + +Y + HP+V L+ + +R+ + + + +P
Sbjct: 65 HPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNSF 117
Query: 142 VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV 201
++ + ++ L LP + KP A G+ +H++ + +Q + + P + Q ++
Sbjct: 118 SVKSKEE-VIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYI 176
Query: 202 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST-------SAGVFRFPRV--------- 245
NH + KV+ +G +K R SLP+V + + + + +P
Sbjct: 177 NHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIE 236
Query: 246 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDI 305
+ A DP + L + LA ++R LG++L +D I+E+ + V+D+
Sbjct: 237 NSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN-PLVVDV 295
Query: 306 NYFPGYGKMPEYEHIFTDFLLSLTQSR 332
N FP YG +++ L T+
Sbjct: 296 NVFPSYGGKVDFDWFVEKVALCYTEVA 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 2e-09
Identities = 62/424 (14%), Positives = 125/424 (29%), Gaps = 120/424 (28%)
Query: 4 MKEEIEEQTREEELLSFPQTQQQSKL-----VVVGYALTSKKTKSFLQPKLEGLARNKGI 58
+ I+ + R+ +++ +Q+ +L V Y ++ + L+ L L K +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 59 LF----------VAID--QNRPLSDQGPFDIVLHKLT-GK--EWRQILEE----YRQTHP 99
L VA+D + + + F I L +LE Q P
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 100 EVTVL-----DPPYAIQHLHNRQSMLQC-------------VADMNLSNSYGKVDVP-RQ 140
T + I + L V + N++ ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSCKI 268
Query: 141 LVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEP------P 194
L+ R + D + A T + + + L L Y + L P
Sbjct: 269 LLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 195 LV-------LQEFVNHGGVLFKVY--IVGEAIKVVRRFSL----PDVTKQ---DLSTSAG 238
+++ + + + + + + + SL P ++ LS
Sbjct: 328 RRLSIIAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---- 379
Query: 239 VFR---------FPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR-----RQLGLR 284
VF + +D + V +L L+E+ KE L L+
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 285 LFNLD-------IIREHGTRDQFYVIDI------NYF---PGY--------GKMPEYEHI 320
+ + I+ + F D+ YF G+ +M + +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 321 FTDF 324
F DF
Sbjct: 497 FLDF 500
Score = 37.5 bits (86), Expect = 0.007
Identities = 61/377 (16%), Positives = 106/377 (28%), Gaps = 136/377 (36%)
Query: 12 TREEELLSF--PQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPL 69
TR +++ F T L LT + KS L L+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----------CRPQDLPRE 321
Query: 70 SDQG-PFDIVL-------HKLTGKEWRQI----LEEYRQTHPEVTVLDPPYAIQHLHNRQ 117
P + + T W+ + L ++ + VL+P + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAE-YRKM---- 374
Query: 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKA-----------GLTLPLVAK 166
+ +L + ++ IP ++L + L
Sbjct: 375 --------------F------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 167 PLVADGSAKS----HELSLAY---------------DQYSLKK------LEPPLVLQEFV 201
LV +S + L D Y++ K L PP + Q F
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 202 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP----RVSCAAASADDADL 257
+H G K E + + R L D FRF R A +A + L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFL-D------------FRFLEQKIRHDSTAWNASGSIL 521
Query: 258 DPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 317
+ L++ L+ + I ++ V I F +P+
Sbjct: 522 N----------TLQQ----------LKFYKPYICDNDPKYER-LVNAILDF-----LPKI 555
Query: 318 EHI-----FTDFL-LSL 328
E +TD L ++L
Sbjct: 556 EENLICSKYTDLLRIAL 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 4e-06
Identities = 62/310 (20%), Positives = 96/310 (30%), Gaps = 110/310 (35%)
Query: 67 RPLS-DQGPFDIVLHKLTGKEWR--QILEEYRQTHPEVT----VLDPPYAIQHLHNRQSM 119
RPL+ G + VL T + Q+ E++ + PE T D P L +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--F 64
Query: 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT------LPLVAKPLVADGS 173
L V+ ++E D VL LT L
Sbjct: 65 LGYVSS----------------LVEPSKVGQFDQVLNLCLTEFENCYL----------EG 98
Query: 174 AKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDL 233
H +LA L + +++ L K YI A + +R P K+
Sbjct: 99 NDIH--ALA---AKLLQENDTTLVKTK-----ELIKNYI--TARIMAKR---P-FDKK-- 140
Query: 234 STSAGVFRFPRVSCAAASADDADL----------DPCVAEL-----PPRPLLERLAKELR 278
S SA +FR A +A L D EL L+ L K
Sbjct: 141 SNSA-LFR-------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 279 RQLGLRLFNLDIIREHGTRDQFY--VIDINYF---PGYGKMPEYEHIFTDFLLS------ 327
L ++IR ++ + ++I + P P+ D+LLS
Sbjct: 193 ETL------SELIRTTLDAEKVFTQGLNILEWLENP--SNTPD-----KDYLLSIPISCP 239
Query: 328 ---LTQ-SRY 333
+ Q + Y
Sbjct: 240 LIGVIQLAHY 249
Score = 40.8 bits (95), Expect = 5e-04
Identities = 49/328 (14%), Positives = 91/328 (27%), Gaps = 112/328 (34%)
Query: 21 PQTQQQSKLVVVGY----ALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFD 76
T ++K ++ Y + + L VAI QG D
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQGNTD 167
Query: 77 IVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVD 136
+E R + + Y V L ++ + L +++ D + G ++
Sbjct: 168 DYF-----EELRDLYQTYH---VLVGDL-IKFSAETL---SELIRTTLDAEKVFTQG-LN 214
Query: 137 VPRQLVIERDASSIPDV--VLKAGLTLPL------------------------------- 163
+ L + S+ PD +L ++ PL
Sbjct: 215 ILEWL---ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 164 -VAKPLVA--------------DGSAK-----------SHELSLAYDQYSLKKLEPPLVL 197
++ LV K +E AY SL PP +L
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE---AYPNTSL----PPSIL 324
Query: 198 QEFVNHG-GV----LFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA 252
++ + + GV L + + V T++ + +V + +
Sbjct: 325 EDSLENNEGVPSPML-----------SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 253 DDADLDPCVAELPPRPLLERLAKELRRQ 280
V PP+ L L LR+
Sbjct: 374 AKN----LVVSGPPQS-LYGLNLTLRKA 396
Score = 34.3 bits (78), Expect = 0.075
Identities = 34/244 (13%), Positives = 78/244 (31%), Gaps = 87/244 (35%)
Query: 126 MNLSNSYGKVDVPRQLVIERDAS-------SIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178
M+L Y + + D SI D+V+ + L + G K
Sbjct: 1633 MDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL------TIHFGGEKGKR 1683
Query: 179 L-----SLAYDQYSLKKLEPPLVLQE---------FVNHGGVLFK-------VYIVGEAI 217
+ ++ ++ KL+ + +E F + G+L + ++ +A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 218 -KVVR-RFSLPDVTKQD-------------LSTSAGVFRF------------------PR 244
+ ++ + +P D L++ A V PR
Sbjct: 1744 FEDLKSKGLIPA----DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 245 VSCAAASADDADLDP-CVAELPPRPLLERLAKELRRQLGLRL----FNLDIIREHGTRDQ 299
++ ++P VA + L+ + + + ++ G + +N++ +Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--------NQ 1851
Query: 300 FYVI 303
YV
Sbjct: 1852 QYVA 1855
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 44.3 bits (105), Expect = 2e-05
Identities = 37/278 (13%), Positives = 85/278 (30%), Gaps = 62/278 (22%)
Query: 53 ARNKGILFVAIDQNR---PLSDQGP----FDIVLHKLTGKEWR----QILEEYRQTHPEV 101
A G+ + + L ++ + L + + + L +
Sbjct: 20 AEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALG-----I 74
Query: 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL 161
V++ P I+ ++ + +A + P+ + D ++ G
Sbjct: 75 PVVNRPEVIEACGDKWATSVALAKAG-------LPQPKTALAT-DREEALRLMEAFGY-- 124
Query: 162 PLVAKPL-------VADGSAKSHELSLAYDQYSLKKLE-PPLVLQEFVNHGGVLFKVYIV 213
P+V KP+ +A + L + +QE+V G +V++V
Sbjct: 125 PVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV 184
Query: 214 G-EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLER 272
G AI + R + + +A + C P + R
Sbjct: 185 GERAIAAIYR-------------RSAHWI-------TNTARGGQAENC----PLTEEVAR 220
Query: 273 LAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG 310
L+ + +G + +D+ + V ++N+
Sbjct: 221 LSVKAAEAVGGGVVAVDLFE---SERGLLVNEVNHTME 255
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 40.2 bits (94), Expect = 5e-04
Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 39/208 (18%)
Query: 101 VTVLDPPY-AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL 159
VTV+ PY A + ++ +M + + R +S + + +
Sbjct: 99 VTVIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR---TYATMASFEEALAAGEV 148
Query: 160 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKV 219
LP+ KP S + + + L L++QE +VG+ + V
Sbjct: 149 QLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQE-----------LLVGQELGV 197
Query: 220 VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR 279
+ D+ +++ + + + + R + L + +
Sbjct: 198 ---DAYVDLISGKVTSIFIKEKLTMRAG----------ETDKSRSVLRDDVFELVEHVLD 244
Query: 280 QLGLR-LFNLDIIREHGTRDQFYVIDIN 306
GL + D+ G Y+ +IN
Sbjct: 245 GSGLVGPLDFDLFDVAG---TLYLSEIN 269
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 38.4 bits (89), Expect = 0.002
Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 63/257 (24%)
Query: 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAG----------LTLP 162
+ +R+ + + + +PR ++ RD ++ + L G P
Sbjct: 95 IQDRREVYSILQAEG-------ILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKP 147
Query: 163 LVAKPLVAD--------------GSA----KSHELSLAYDQYSLKKLEPPLVLQEFVNHG 204
V KP+ A+ GS K S Y S + + +EF+
Sbjct: 148 FVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTD 207
Query: 205 GVLFKVYIVG-EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAE 263
G KVY VG + R S K + + R+P
Sbjct: 208 GTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYP------------------VI 249
Query: 264 LPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY----EH 319
L R + +A ++ + D++R +G Q YV D+N F +Y
Sbjct: 250 LNAR--EKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDVNGFSFVKNSMKYYDDCAK 304
Query: 320 IFTDFLLSLTQSRYKKK 336
I + ++ ++
Sbjct: 305 ILGNIVMRELAPQFHIP 321
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 30.6 bits (70), Expect = 0.81
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 85 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 114
WR L +Q P + P YAI+ L
Sbjct: 353 GVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLD 387
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 29.5 bits (67), Expect = 1.6
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 4 MKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAI 63
MK +++ +E+ L + S++ V + + K K+ + R+ G + +
Sbjct: 93 MKMGLKDTPTQEDWLV-SVLPEGSRVGVDPLIIPTDYWK-----KMAKVLRSAGHHLIPV 146
Query: 64 DQN--------RPLSDQGPFDIVLHKLTGKEW-------RQILEEYRQTHPEVTVLD 105
+N RP P + TG W R + E VT LD
Sbjct: 147 KENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALD 203
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.0
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 39/67 (58%)
Query: 184 DQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP 243
++ +LKKL+ L K+Y A D SA P
Sbjct: 18 EKQALKKLQASL-------------KLY----A---------DD--------SA-----P 38
Query: 244 RVSCAAA 250
++ A
Sbjct: 39 ALAIKAT 45
>3lr0_A Sensor protein; niaid, seattle structural genomics center for
infectious DIS ssgcid, PH, RISS, iodide phased,
burkholder melioidosis; 1.90A {Burkholderia
pseudomallei} PDB: 3lr3_A 3lr5_A
Length = 143
Score = 28.4 bits (63), Expect = 2.1
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 231 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDI 290
QDL ++ GV +PR + D P + + ++R +LG + I
Sbjct: 63 QDLESNEGVRVYPR--------EKTDK---FKLQPDESVNRLIEHDIRSRLGD---DTVI 108
Query: 291 IREHGTRDQFYV 302
+ ++
Sbjct: 109 AQSVNDIPGVWI 120
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Length = 127
Score = 27.6 bits (61), Expect = 3.1
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 231 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDI 290
QDL ++ GV +PR + D P + + ++R +LG + I
Sbjct: 47 QDLESNEGVRVYPR--------EKTDK---FKLQPDESVNRLIEHDIRSRLGD---DTVI 92
Query: 291 IREHGTRDQFYV 302
+ ++
Sbjct: 93 AQSVNDIPGVWI 104
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.7 bits (65), Expect = 3.1
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 85 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 114
KEW ++ ++T + + P + ++
Sbjct: 369 KEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMN 403
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 28.6 bits (64), Expect = 3.3
Identities = 4/35 (11%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 70 SDQGPFDIVL-HKLTGKEWRQILEEYRQTHPEVTV 103
+ G I + ++++ + + +P++T+
Sbjct: 25 AGGGKTKISFYSYFKDNQIGEVVKGFEKKNPDITL 59
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.4 bits (64), Expect = 4.2
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 85 KEWRQILEEYRQTHP-------EVTVLDPPYAIQHLH 114
EW + ++++ +P + + P I+ L
Sbjct: 435 SEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLS 471
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 27.8 bits (62), Expect = 5.9
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 38/142 (26%)
Query: 78 VLHKLTGKE---WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGK 134
+ G E ++ Y+Q +P V V++ N +++L+ M
Sbjct: 5 IFSWWAGDEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLK--TRML------- 55
Query: 135 VDVPRQLVIERDASSIPDVV-LKAGLTL--PLVAKPLVADGSAKSHELSLAYDQYSLKKL 191
PD + AG+ L V + D LS + Q +
Sbjct: 56 ------------GGDPPDTFQVHAGMELIGTWVVANRMED-------LSALFRQEGWLQA 96
Query: 192 EPPLVLQEFVNHGGVLFKVYIV 213
P ++ G ++ V
Sbjct: 97 FPKGLIDLISYKG----GIWSV 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.395
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,312,904
Number of extensions: 330175
Number of successful extensions: 951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 930
Number of HSP's successfully gapped: 35
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)