BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019602
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa
Hydrolase In Complex With Quercetin
Length = 363
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 159/286 (55%), Gaps = 26/286 (9%)
Query: 50 FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD 109
F EY L + +KPY++L+ G+T G G+G+S HG++R+ TEK L A PE IGLFPD
Sbjct: 88 FREEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRVATEKCLFAXPETAIGLFPD 147
Query: 110 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTF 169
VG Y + G +G +L +TG R+ D AG+ T +V S L L+E LLA+
Sbjct: 148 VGGGYFLPRLQ--GKLGYFLALTGFRLKG-RDVYRAGIATHFVDSEKLAXLEEDLLAL-- 202
Query: 170 SEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ----ITSCFSSEKSVRQIIEELKKHQSSA 225
++I ++L Y ++ + + +L + I SCFS+ +V +IIE L++ SS
Sbjct: 203 KSPSKENIASVLENYHTESKIDRDKSFILEEHXDKINSCFSA-NTVEEIIENLQQDGSS- 260
Query: 226 ETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR 285
+A E L+ + K +P SL +T + + +S L V+ EYR++
Sbjct: 261 ------FALEQLKVINKXSPTSLKITLRQLXEGSS---------KTLQEVLTXEYRLSQA 305
Query: 286 SSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT 331
DF EGVRAVL+DKDQ+PKW PA L+EV + ++ F+ LG+
Sbjct: 306 CXRGHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGS 351
>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From
Mycobacterium Thermoresistibile
Length = 353
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 157/304 (51%), Gaps = 28/304 (9%)
Query: 26 ICGQSPLNHLQSTTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH 85
+C + + + + +E + EY L I Y KPY+S+MDG+ MG G+G+ H
Sbjct: 67 LCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAH 126
Query: 86 GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFA 145
G R+VT+ T +AMPE GIG PDVG +Y+ ++ P G +G + +TG S +DA+
Sbjct: 127 GNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAP--GKLGLHAALTGAPFSG-ADAIVM 183
Query: 146 GLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 205
G YVP + A++A + A LA ++ +P +PL I C+
Sbjct: 184 GFADHYVPHDKIDEFTRAVIA--------DGVDAALAAHAQEPPA-SPLAEQRSWIDECY 234
Query: 206 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKT 265
+ + +V II L+ H + A A EA + +P +L +T + + A
Sbjct: 235 TGD-TVADIIAALRAHDAPA-------AGEAADLIATRSPIALSVTLESVRRAA------ 280
Query: 266 DNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEAL 325
+L L ++ EYRV+ S D EG+RA LVDKD+NPKW PA+L EV +++VEA
Sbjct: 281 --KLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRPATLAEVTEADVEAY 338
Query: 326 FEPL 329
F P+
Sbjct: 339 FAPV 342
>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From
Rhodobacter Sphaeroides 2.4.1
pdb|4J2U|B Chain B, Crystal Structure Of An Enoyl-coa Hydratase From
Rhodobacter Sphaeroides 2.4.1
Length = 365
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 33/283 (11%)
Query: 48 EVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF 107
+ + EY +I+ + KP +SL G T G G+G+ H R+RIV E + ++ PE IGL
Sbjct: 105 DFWRVEYRXNDRIAAFPKPIVSLXQGFTXGGGVGLGCHARHRIVGETSQISXPECAIGLV 164
Query: 108 PDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 167
PDVG +++ A+ P G +G +LG+TG R P DA+FAG +VP + L AL
Sbjct: 165 PDVGGTHLLARAP--GRIGVWLGLTGARXG-PGDAIFAGFADRFVPEADWPDLIAALEGG 221
Query: 168 TFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAET 227
+ H + PEG P +L +I F+ + E+ + +T
Sbjct: 222 DLALPDH-----------AAPEGRLP--VLQDEIDRLFAG------TLAEIPARLEATDT 262
Query: 228 SVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSS 287
+A EAL+ + + +P +L T + ++ + G + + EYR R+
Sbjct: 263 PLAA---EALKALRRSSPLALAATLEILQRLGPSAG--------IREALDLEYRFTYRAQ 311
Query: 288 LRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLG 330
++DF EG+RA ++DKD++P+W E V EV +L PLG
Sbjct: 312 GQADFLEGIRAAIIDKDRSPRWRHGDPEAVRPEEVASLLAPLG 354
>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY
PROTEIN
pdb|3JU1|B Chain B, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY
PROTEIN
Length = 407
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 149/311 (47%), Gaps = 35/311 (11%)
Query: 32 LNHLQSTTQNQLSEMIEVF-TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 90
L H + Q++E+ +VF EY L + Y KP + DG+ G G+G+ +++
Sbjct: 109 LYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVXGGGLGLXAGASHKV 168
Query: 91 VTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 150
VTE + +A PE IGL+PDVG SY + P G G +LG+T + +DA + GL
Sbjct: 169 VTETSRIAXPEVTIGLYPDVGGSYFLNRXP--GKXGLFLGLTAYHXNA-ADACYVGLADH 225
Query: 151 YVPSGNLGSLKEALLAVTFSEDP---HQDIVALLAKYSSD---PEGEAPLKLLLPQITSC 204
Y+ + +A + +S+ P HQ + + + S+ P+G++ L
Sbjct: 226 YLNRDDKELXFDAXATLDWSDSPALNHQRLDTXINELSNQVDIPKGDSVLA--------- 276
Query: 205 FSSEKSVRQI----IEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 260
S++ + ++ + ++ S+ T A W +A G+P S L A
Sbjct: 277 -ESQEXIDRLXAGSLTDIVTRXSTLSTDEA-WLSKACATXLAGSPISWHL--------AY 326
Query: 261 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQS 320
+ +LS L+ K+E V++ + DF EGVRA+L+DKD+ PKW A ++ V S
Sbjct: 327 IQTQLGTKLS-LAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDKQPKWQFADVQSVPNS 385
Query: 321 EVEALF-EPLG 330
+E + P G
Sbjct: 386 VIEDILTSPWG 396
>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3QXZ|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3QXZ|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 265
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 62 EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 121
E + P I+ ++G +G G+ ++ H RI+ E+ A+P+ G+ PD ++
Sbjct: 96 ELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDA-LAHWTLPRLV 154
Query: 122 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN-LGSLKEALLAVTFSEDPHQDIVAL 180
G +V A L +TG S A+ GL +P+G LG+ A+ + D ++
Sbjct: 155 GTAVAAELLLTGASFSA-QRAVETGLANRCLPAGKVLGA------ALRMAHDIATNVA-- 205
Query: 181 LAKYSSDPEGEAPLKLLL--PQITSCFSSEKSVRQIIEELK 219
PE A K LL Q+T ++E + R+ + L+
Sbjct: 206 -------PESAALTKRLLWDAQMTGMSAAEVAARETADHLR 239
>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
Length = 253
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 65 KPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 124
KP I ++G + G+ ++ + I +E A +GL P G S + G G
Sbjct: 92 KPVIGAINGAAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIG- 150
Query: 125 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 184
+ + +TG +S +DAL AGL T+ VP L +A +A + + + ALLA Y
Sbjct: 151 LARRMSLTGDYLSA-ADALRAGLVTEVVPHDQLLGAAQA-VAASIVGNNQNAVRALLASY 208
>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium
Avium
Length = 270
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 65 KPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 124
KP I ++G + G+ ++ + I +E A +GL P G S + G G
Sbjct: 109 KPVIGAINGAAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIG- 167
Query: 125 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 184
+ + +TG +S +DAL AGL T+ VP L A +A + + + ALL Y
Sbjct: 168 LARRMSLTGDYLSA-ADALRAGLVTEVVPHDQLLGAARA-VAASIVGNNQNAVRALLTSY 225
>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
Length = 261
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 38 TTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 97
T Q +E+ ++ + + K S KP I+ + G +G G+ + R TE L
Sbjct: 75 TEAKQATELAQLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAXSCHXRFATESAKL 131
Query: 98 AMPENGIGLFPDVGFS 113
+PE +GL P GF+
Sbjct: 132 GLPELTLGLIP--GFA 145
>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase
pdb|1DCI|B Chain B, Dienoyl-Coa Isomerase
pdb|1DCI|C Chain C, Dienoyl-Coa Isomerase
Length = 275
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 43 LSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 102
L ++I + +++I K KP I+ + G +G G+ + R T+ + E
Sbjct: 89 LRDLISRYQKTFTVIEKCP---KPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEV 145
Query: 103 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKE 162
+GL DVG K G S+ L T +++ +AL +GL + P K+
Sbjct: 146 DVGLAADVGTLQRLPKVIGNRSLVNELTFTARKM-MADEALDSGLVSRVFPD------KD 198
Query: 163 ALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEEL 218
+L F AL A SS ++P+ + +I +S + SV + ++ +
Sbjct: 199 VMLNAAF---------ALAADISS----KSPVAVQGSKINLIYSRDHSVDESLDYM 241
>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein
pdb|2GTR|B Chain B, Human Chromodomain Y-Like Protein
pdb|2GTR|C Chain C, Human Chromodomain Y-Like Protein
Length = 261
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 27 CGQSPLNHLQSTTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG 86
CG + ++ T ++ E ++ A + + ++KKP I ++G +G G I
Sbjct: 64 CGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLC 123
Query: 87 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 146
EK P G PD + + K GG S L ++G+++ T +A G
Sbjct: 124 DVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEML-LSGRKL-TAQEACGKG 181
Query: 147 L 147
L
Sbjct: 182 L 182
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 55 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP 108
SL+ +I Y+KP ++ + GV +G G+ ++ YRI K + +PE +G+ P
Sbjct: 82 SLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILP 135
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 55 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP 108
SL+ +I Y+KP ++ + GV +G G+ ++ YRI K + +PE +G+ P
Sbjct: 97 SLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILP 150
>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|B Chain B, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|C Chain C, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|D Chain D, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|E Chain E, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|F Chain F, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
Length = 254
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 56 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 115
++ +S +KP + ++GV G G+ ++ G R+ IGL PD G S++
Sbjct: 83 VVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFL 142
Query: 116 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPH 174
+ G L + R+S +AL GL VP+ L ++EAL LA ++ P
Sbjct: 143 LPRLVGLAKAQELL-LLSPRLSA-EEALALGLVHRVVPAEKL--MEEALSLAKELAQGPT 198
Query: 175 Q 175
+
Sbjct: 199 R 199
>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From
Mycobacterium Marinum
Length = 256
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 56 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 115
LI ++ + KP I ++G+ +G G I G+ ++ L P +G+ P+ SY+
Sbjct: 91 LIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYL 150
Query: 116 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 147
+ G + A+L M+ + I +AL GL
Sbjct: 151 LPQLVGRQN-AAWLLMSSEWIDA-EEALRMGL 180
>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3
pdb|1NZY|C Chain C, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3
Length = 269
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 54 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 113
+ +I KI K+P ++ ++GV G G+GIS I + + IG+ D S
Sbjct: 90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATS 149
Query: 114 YIAAK 118
Y A+
Sbjct: 150 YSLAR 154
>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3
Length = 269
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 54 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 113
+ +I KI K+P ++ ++GV G G+GIS I + + IG+ D S
Sbjct: 90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATS 149
Query: 114 YIAAK 118
Y A+
Sbjct: 150 YSLAR 154
>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|B Chain B, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|C Chain C, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|D Chain D, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|E Chain E, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|F Chain F, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
Length = 266
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 54 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 113
+ L+ + KP I + GV +G G+ I L +P +GL P+ G S
Sbjct: 89 FVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGAS 148
Query: 114 YIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYV 152
+ K G A L T K+ + + AL AGL + V
Sbjct: 149 QLLVK-QAGYHKAAELLFTAKKFNAET-ALQAGLVNEIV 185
>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A
Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A
(Product)
pdb|1JXZ|B Chain B, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A
Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A
(Product)
pdb|1JXZ|C Chain C, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A
Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A
(Product)
Length = 269
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 56 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 115
+I KI K+P ++ ++GV G G+GIS I + + IG+ D SY
Sbjct: 92 MIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYS 151
Query: 116 AAK 118
A+
Sbjct: 152 LAR 154
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 55 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP 108
SL+ +I Y+KP ++ + GV +G G+ ++ YRI K + +P +G+ P
Sbjct: 97 SLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPAVTLGILP 150
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/46 (21%), Positives = 27/46 (58%)
Query: 66 PYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 111
P ++ ++G+ +G G+ + +R++ + + +PE +G++P G
Sbjct: 105 PTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFG 150
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 236 ALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMKY 278
++Q + +GA F L FS+ +A+ G T E+S L G KY
Sbjct: 136 SIQALEEGAEFLLVFDDGSFSENSVFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 195
Query: 279 EYRVALRSSLRSDFAEG 295
+ L SL+ D EG
Sbjct: 196 IFENQLPGSLKDDIVEG 212
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 236 ALQGMGKGAPFSLCLTQKYFSK---------------VASAHGKTDNELSKLSGVMKYEY 280
++Q + +GA F L FS +A+ G T E+S L G KY +
Sbjct: 141 SIQALEEGAEFLLVFDDGSFSSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIF 200
Query: 281 RVALRSSLRSDFAEG 295
L SL+ D EG
Sbjct: 201 ENQLPGSLKDDIVEG 215
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 236 ALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMKY 278
++Q + +GA F L FS+ +A+ G T E+S L G KY
Sbjct: 141 SIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 200
Query: 279 EYRVALRSSLRSDFAEG 295
+ L SL+ D EG
Sbjct: 201 IFENQLPGSLKDDIVEG 217
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 236 ALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMKY 278
++Q + +GA F L FS+ +A+ G T E+S L G KY
Sbjct: 141 SIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 200
Query: 279 EYRVALRSSLRSDFAEG 295
+ L SL+ D EG
Sbjct: 201 IFENQLPGSLKDDIVEG 217
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 236 ALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMKY 278
++Q + +GA F L FS+ +A+ G T E+S L G KY
Sbjct: 141 SIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 200
Query: 279 EYRVALRSSLRSDFAEG 295
+ L SL+ D EG
Sbjct: 201 IFENQLPGSLKDDIVEG 217
>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycob Smegmatis
Length = 263
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 60 ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 119
+++ +KP ++ + G +G G ++ I + PE +G+ P +G + +
Sbjct: 96 LTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRA 155
Query: 120 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 164
G L +TG+ + T +A GL + VP+ +L L EAL
Sbjct: 156 VGKAK-AMDLCLTGRSL-TAEEAERVGLVSRIVPAADL--LDEAL 196
>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From
Mycobacterium Avium
pdb|3R0O|B Chain B, Crystal Structure Of Carnitinyl-Coa Hydratase From
Mycobacterium Avium
pdb|3R0O|C Chain C, Crystal Structure Of Carnitinyl-Coa Hydratase From
Mycobacterium Avium
Length = 273
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 65 KPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-IAAKGPGGG 123
KP I+ ++G +G G ++ I E +PE GL G + I + P
Sbjct: 108 KPTIAAVNGTALGGGSELALASDLVIACESASFGLPEVKRGLIAGAGGVFRIVEQLP--R 165
Query: 124 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 167
V L +TG+ + T SDAL GL + VP G++ EA LA+
Sbjct: 166 KVALELVLTGEPM-TASDALRWGLINEVVPD---GTVVEAALAL 205
>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|B Chain B, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|C Chain C, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
Length = 296
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 60 ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 119
I KP I+ + G +G G+ + R + + E +GL DVG K
Sbjct: 130 IERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKV 189
Query: 120 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 153
G S+ L T +++ +AL +GL + P
Sbjct: 190 IGNQSLVNELAFTARKM-MADEALGSGLVSRVFP 222
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 236 ALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMKY 278
++Q + +GA F L FS +A+ G T E+S L G KY
Sbjct: 141 SIQALEEGAEFLLVFDDGSFSANSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 200
Query: 279 EYRVALRSSLRSDFAEG 295
+ L SL+ D EG
Sbjct: 201 IFENQLPGSLKDDIVEG 217
>pdb|2J42|A Chain A, Low Quality Crystal Structure Of The Transport Component
C2- Ii Of The C2-Toxin From Clostridium Botulinum
Length = 721
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 86 GRYRIVTE--KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDAL 143
G Y I+ E L M + L P + ++ + + GG + + TG S+
Sbjct: 410 GTYPIIGEPPMALNTMDQFSSRLIP-INYNQLKSIDNGGTVMLSTSQFTGNFAKYNSNGN 468
Query: 144 FAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 203
G ++ P LG++K ++T S VA++A SDPE + P L +
Sbjct: 469 LVTDGNNWGPY--LGTIKSTTASLTLSLPDQTTQVAVVAPNFSDPEDKTPRLTLEQALVK 526
Query: 204 CFSSEK 209
F EK
Sbjct: 527 AFRLEK 532
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 157 LGSLKEA-LLAVTFSEDPHQDIVALL-AKYSSDPEGEAPLKLLLPQITSCFSSEKS 210
G+L++A + V SEDPH D++ L +Y G P +L +P C +S ++
Sbjct: 146 FGALQDAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEA 201
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 157 LGSLKEA-LLAVTFSEDPHQDIVALL-AKYSSDPEGEAPLKLLLPQITSCFSSEKS 210
G+L++A + V SEDPH D++ L +Y G P +L +P C +S ++
Sbjct: 146 FGALQDAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEA 201
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 236 ALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMKY 278
++Q + +GA F L F++ +A+ G T E+S L G KY
Sbjct: 141 SIQALEEGAEFLLVFDDGSFAENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 200
Query: 279 EYRVALRSSLRSDFAEG 295
+ L SL+ D EG
Sbjct: 201 IFENQLPGSLKDDIVEG 217
>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|B Chain B, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|C Chain C, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|D Chain D, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|E Chain E, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|F Chain F, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
Length = 265
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 3 KFKITIFHICFDSNISSFPNNAVICGQSPLNHLQSTTQNQLSEMIEVFTAEYSLIC---- 58
+F I I FD +I ++ P N L F ++ L C
Sbjct: 39 EFNAAIDDIRFDPDIKV----VIVXSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETL 94
Query: 59 -KISEYKKPYISLMDGVTMGFGIGISGHGRYRIV-TEKTLLAMPENGIGLFPDVGFSYIA 116
KI+ + YI+ ++G T+G G+ + R E + +PE +G+ G +
Sbjct: 95 DKIARSPQVYIACLEGHTVGGGLEXALACDLRFXGDEAGKIGLPEVSLGVLAGTGGTQRL 154
Query: 117 AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 153
A+ G S +TG+ I TP +AL GL P
Sbjct: 155 ARLI-GYSRALDXNITGETI-TPQEALEIGLVNRVFP 189
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 236 ALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMKY 278
++Q + +GA F L F +A+ G T E+S L G KY
Sbjct: 141 SIQALEEGAEFLLVFDDGSFDSSNTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 200
Query: 279 EYRVALRSSLRSDFAEG 295
+ L SL+ D EG
Sbjct: 201 IFENQLPGSLKDDIVEG 217
>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From
Rhodopseudomonas Palustris Cga009
pdb|3HIN|B Chain B, Crystal Structure Of Putative Enoyl-Coa Hydratase From
Rhodopseudomonas Palustris Cga009
Length = 275
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 59 KISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK 118
KI + P I+ + G +G G+ ++ R+ A+PE G+F VG
Sbjct: 101 KIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIF--VG------- 151
Query: 119 GPGGGSV 125
GGGSV
Sbjct: 152 --GGGSV 156
>pdb|3U5C|M Chain M, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|M Chain M, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 143
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 138 TPSDALFAGLGTDYVPSGNLGSLKE---------ALLAVTFSEDPHQDIVALLAKYSSDP 188
T DAL L T V G L+E ALL V S +I+ L+ ++DP
Sbjct: 23 TIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDP 82
Query: 189 EGEAPL 194
E + PL
Sbjct: 83 ENKVPL 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,026,201
Number of Sequences: 62578
Number of extensions: 419965
Number of successful extensions: 1276
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 48
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)