BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019603
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 129/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 86
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 87 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 199
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N++ + D G+ ++ + A F+ G+++VSGS
Sbjct: 200 FVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D+ ++L+D K +KT K+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE 239
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + +++ Y+ ++ I++ +GH + VIS P +
Sbjct: 240 KYCI-FANFS---VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 46/170 (27%)
Query: 109 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ 168
++ GH + V S+ SP + S S D ++IW
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------------------------ 53
Query: 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
GA YD G F+ + G + D+ +S+D ++ + + +
Sbjct: 54 ----------GA--------YD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 94 IWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 18/285 (6%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G S V S+
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI---------SDVAWSSD 79
Query: 90 YNLDSTGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 146
NL + + L ++D + L+ KGH V +P ++ +SGS D SVRIWD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 147 RVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA 204
+ C L P V F++ G + + G +++D+ S G L+ D
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNP 196
Query: 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVV 263
V +KFS +GK +L T +N + + D G+ ++ + A F+ G+++V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 264 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
SGS D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + +++ Y+ ++ I++ +GH + VIS P +
Sbjct: 240 KYCI-FANFS---VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 46/170 (27%)
Query: 109 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ 168
++ GH + V S+ SP + S S D ++IW
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----------------------- 54
Query: 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
+YD G F+ + G + D+ +S+D ++ + + +
Sbjct: 55 -------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 94 IWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 18/285 (6%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G S V S+
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI---------SDVAWSSD 72
Query: 90 YNLDSTGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 146
NL + + L ++D + L+ KGH V +P ++ +SGS D SVRIWD+
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 147 RVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA 204
+ C L P V F++ G + + G +++D+ S G L+ D
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNP 189
Query: 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVV 263
V +KFS +GK +L T +N + + D G+ ++ + A F+ G+++V
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 264 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
SGS D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 67
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 173 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 232
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 233 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 288
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 289 IIASAALENDKTIKLW 304
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 47
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 48 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 83
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 84 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 89
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 90 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 202
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 243 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 57
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 58 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 94 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 18/285 (6%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G S V S+
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI---------SDVAWSSD 82
Query: 90 YNLDSTGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 146
NL + + L ++D + L+ KGH V +P ++ +SGS D SVRIWD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 147 RVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA 204
+ C L P V F++ G + + G +++D+ S G L+ D
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNP 199
Query: 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVV 263
V +KFS +GK +L T +N + + D G+ ++ + A F+ G+++V
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 264 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
SGS D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 243 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 57
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 58 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 94 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 82
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 83 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 138
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 139 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 195
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 196 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 70
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 236 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 291
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 292 IIASAALENDKTIKLW 307
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 50
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 51 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 86
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 87 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 83
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 84 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 196
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 71
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 237 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 293 IIASAALENDKTIKLW 308
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 51
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 52 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 88 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 89
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 90 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 202
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 243 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 47/188 (25%)
Query: 92 LDSTGESLRYLSMYDNRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA 150
L S+ + + N L++ GH + V S+ SP + S S D ++IW
Sbjct: 3 LGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG----- 57
Query: 151 CQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 210
+YD G F+ + G + D+
Sbjct: 58 -------------------------------------AYD-GKFEK-TISGHKLGISDVA 78
Query: 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270
+S+D ++ + + + + D G +C +L+ N F P +VSGS D +
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 271 LHAWNINT 278
+ W++ T
Sbjct: 137 VRIWDVKT 144
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 83
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 84 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 196
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 71
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 237 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 293 IIASAALENDKTIKLW 308
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 51
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 52 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 88 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 18/285 (6%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G S V S+
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI---------SDVAWSSD 98
Query: 90 YNLDSTGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 146
NL + + L ++D + L+ KGH V +P ++ +SGS D SVRIWD+
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 147 RVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA 204
+ C L P V F++ G + + G +++D+ S G L+ D
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNP 215
Query: 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVV 263
V +KFS +GK +L T +N + + D G+ ++ + A F+ G+++V
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 264 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
SGS D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 93
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 259 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 314
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 315 IIASAALENDKTIKLW 330
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 73
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 74 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 109
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 110 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 100
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 101 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 156
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 157 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 213
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 88
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 254 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 309
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 310 IIASAALENDKTIKLW 325
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 47/193 (24%)
Query: 87 STKYNLDSTGESLRYLSMYDNRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 145
S + NL G + + N L++ GH + V S+ SP + S S D ++IW
Sbjct: 9 SGRENLYFQGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG 68
Query: 146 LRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 205
+YD G F+ + G
Sbjct: 69 ------------------------------------------AYD-GKFEK-TISGHKLG 84
Query: 206 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 265
+ D+ +S+D ++ + + + + D G +C +L+ N F P +VSG
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 266 SGDGTLHAWNINT 278
S D ++ W++ T
Sbjct: 143 SFDESVRIWDVKT 155
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 88
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 89 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 144
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 145 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 201
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 76
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 242 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 297
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 298 IIASAALENDKTIKLW 313
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 56
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 57 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 92
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 93 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 84
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 85 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 140
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 141 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 197
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 72
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 237
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 238 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 293
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 294 IIASAALENDKTIKLW 309
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 52
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 53 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 88
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 89 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 18/285 (6%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G S V S+
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI---------SDVAWSSD 100
Query: 90 YNLDSTGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 146
NL + + L ++D + L+ KGH V +P ++ +SGS D SVRIWD+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 147 RVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA 204
+ C L P V F++ G + + G +++D+ S G L+ D
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNP 217
Query: 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVV 263
V +KFS +GK +L T +N + + D G+ ++ + A F+ G+++V
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 264 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
SGS D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 95
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 261 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 316
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 317 IIASAALENDKTIKLW 332
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 75
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 76 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 111
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 112 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 86
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 87 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 199
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 240 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 131 SFMSGSLDHSVRI 143
S +L++ I
Sbjct: 296 IIASAALENDKTI 308
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 54
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 55 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 91 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L ++S D ++++ K KT K G V ++ + ++ +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 86
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 87 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 199
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 240 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 131 SFMSGSLDHSVRI 143
S +L++ I
Sbjct: 296 IIASAALENDKTI 308
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 54
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 55 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 91 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 12/282 (4%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
++S+ F + L +S D ++++ K KT K G V ++ + ++ +
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-- 86
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
S ++L+ + + L+ KGH V +P ++ +SGS D SVRIWD++
Sbjct: 87 ----SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 150 ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207
C L P V F++ G + + G +++D+ S G L+ D V
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVS 199
Query: 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGS 266
+KFS +GK +L T +N + + D G+ ++ + A F+ G+++VSGS
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
D ++ WN+ T+ V G+ VV P + +A+
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 253
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG 71
+T + + D ++ + F ++ A+ D++++L+D K +KT K+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYL-SMYDNRILRYFKGHKERVISLCMSPVND 130
C+ F + + K+ + + ++L Y+ ++ I++ +GH + VIS P +
Sbjct: 240 KYCI-FANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 131 SFMSGSL--DHSVRIW 144
S +L D ++++W
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 107 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 165
N L++ GH + V S+ SP + + S D ++IW
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG-------------------- 54
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 55 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 91 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 38/223 (17%)
Query: 94 STGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA 150
+TG R + ++D +I+ +GH++ + SL P D +SGS D +VRIWDLR
Sbjct: 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198
Query: 151 CQGILRLR-GRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-------- 200
C L + G TVA G A A++++DS + FLV
Sbjct: 199 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-------GFLVERLDSENES 251
Query: 201 --GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATF-- 255
G V + F+ DG+S++ + + ++ + + + S +PN+ T E T+
Sbjct: 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK---SDSKTPNSGTCEVTYIG 308
Query: 256 ----------TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 288
T + +Y++SGS D + W+ + N + G+
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE---------- 252
T+ VC +KFSNDG+ L T N V G S + + N + E
Sbjct: 64 TSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 253 ------ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 306
F+PDG+++ +G+ D + W+I R V G+ + L + P V+
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 307 AS 308
S
Sbjct: 183 GS 184
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)
Query: 120 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFD--QQGLVFAVAME 177
+ S+C SP +G+ D +RIWD+ IL+ + + D G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 237
++++D R+ + G T V DGK + + + + V D+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVS----PGDGKYIAAGSLDRAVRVWDS----- 236
Query: 238 RCGFSLEPSPNTNTEAT----------FTPDGQYVVSGSGDGTLHAWNINTRN 280
GF +E + N T FT DGQ VVSGS D ++ WN+ N
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 116/276 (42%), Gaps = 27/276 (9%)
Query: 10 DDETV----RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
DD+TV R+ + + +N + F + +ASDD +V+L++ + +L++T
Sbjct: 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTL 299
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCM 125
V F+ ++ ++ + L + + L+ GH V +
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASD-------DKTVKLWNRNGQHLQTLTGHSSSVWGVAF 352
Query: 126 SPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRPTVAFDQQGLVFAVAMEAGAI 181
SP + S S D +V++W+ Q + +RG VAF G A A + +
Sbjct: 353 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTV 409
Query: 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241
KL++ G L G ++ V + FS D +++ + + + + + G +
Sbjct: 410 KLWNR----NGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQ 461
Query: 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277
+L ++ F+PDGQ + S S D T+ WN N
Sbjct: 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 116/276 (42%), Gaps = 27/276 (9%)
Query: 10 DDETV----RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
DD+TV R+ + + + + F + +ASDD +V+L++ + +L++T
Sbjct: 77 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 135
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCM 125
V F+ ++ ++ + L + ++L+ GH V +
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASD-------DKTVKLWNRNGQLLQTLTGHSSSVWGVAF 188
Query: 126 SPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRPTVAFDQQGLVFAVAMEAGAI 181
SP + S S D +V++W+ Q + +RG VAF G A A + +
Sbjct: 189 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTV 245
Query: 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241
KL++ G L G ++ V + F DG+++ + + + + + G +
Sbjct: 246 KLWNR----NGQLLQTLTG-HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---QLLQ 297
Query: 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277
+L ++ F+PDGQ + S S D T+ WN N
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 27/276 (9%)
Query: 10 DDETV----RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
DD+TV R+ + + + + F + +ASDD +V+L++ + +L++T
Sbjct: 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 176
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCM 125
V F+ ++ ++ + L + ++L+ GH V +
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASD-------DKTVKLWNRNGQLLQTLTGHSSSVRGVAF 229
Query: 126 SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAMEAGAI 181
SP + S S D +V++W+ Q L G + VAF G A A + +
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241
KL++ G L G ++ V + FS DG+++ + + + + + G +
Sbjct: 287 KLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-- 339
Query: 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277
L ++ F+PDGQ + S S D T+ WN N
Sbjct: 340 -LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%)
Query: 42 LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101
+ +ASDD +V+L++ + +L++T V F+ ++ ++ +
Sbjct: 359 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-------DKTVK 410
Query: 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RL 157
L + ++L+ GH V + SP + + S S D +V++W+ Q + +
Sbjct: 411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 470
Query: 158 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 217
RG VAF G A A + +KL++ G L G ++ V + FS DG++
Sbjct: 471 RG---VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQT 522
Query: 218 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275
+ + + + + + G + +L ++ F+PDGQ + S S D T+ WN
Sbjct: 523 IASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 23/252 (9%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
+ + F + +ASDD +V+L++ + +L++T V F+ ++ ++
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
+ L + ++L+ GH V + SP + S S D +V++W+
Sbjct: 78 -------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 130
Query: 150 ACQGILRLRGRPT----VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 205
Q L G + VAF G A A + +KL++ G L G ++
Sbjct: 131 LLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSS 182
Query: 206 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 265
V + FS DG+++ + + + + + G + +L ++ F+PDGQ + S
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 266 SGDGTLHAWNIN 277
S D T+ WN N
Sbjct: 240 SDDKTVKLWNRN 251
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 27/276 (9%)
Query: 10 DDETV----RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
DD+TV R+ + + + + F + +ASDD +V+L++ + +L++T
Sbjct: 159 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 217
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCM 125
V F+ ++ ++ + L + ++L+ GH V +
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASD-------DKTVKLWNRNGQLLQTLTGHSSSVNGVAF 270
Query: 126 SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAMEAGAI 181
P + S S D +V++W+ Q L G + VAF G A A + +
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTV 327
Query: 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241
KL +++ + G ++ V + FS DG+++ + + + + + G +
Sbjct: 328 KL-----WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQ 379
Query: 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277
+L ++ F+PDGQ + S S D T+ WN N
Sbjct: 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 119/284 (41%), Gaps = 43/284 (15%)
Query: 10 DDETV----RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
DD+TV R+ + + + + F + +ASDD +V+L++
Sbjct: 282 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN---------- 331
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL------RYLSMYD--NRILRYFKGHK 117
++G T H SSV ++ D G+++ + + +++ ++L+ GH
Sbjct: 332 ---RNGQHLQTLTGHSSSV-WGVAFSPD--GQTIASASDDKTVKLWNRNGQLLQTLTGHS 385
Query: 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFA 173
V + SP + S S D +V++W+ Q L G + VAF A
Sbjct: 386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVWGVAFSPDDQTIA 442
Query: 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 233
A + +KL++ G L G ++ V + FS DG+++ + + + + +
Sbjct: 443 SASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Query: 234 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277
G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 498 G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 15/169 (8%)
Query: 113 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQ 168
+ H V + SP + S S D +V++W+ Q L G + VAF
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVWGVAFSPD 68
Query: 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
G A A + +KL++ G L G ++ V + FS DG+++ + + +
Sbjct: 69 GQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277
+ + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 124 LWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 95/245 (38%), Gaps = 48/245 (19%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
+++ F D ++TAS D + L+D+ S +L+++ +H HGAD +C PS
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQS-FHG-HGADVLCLDLAPSET--GNT 212
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
+ + M + ++ F+ H+ V S+ P D+F SGS D + R++DLR +
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 150 ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 209
R + ++ ++F + +
Sbjct: 273 ----------REVAIYSKESIIFGAS--------------------------------SV 290
Query: 210 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 269
FS G+ + + I V D G + L N + +PDG SGS D
Sbjct: 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVS--ILFGHENRVSTLRVSPDGTAFCSGSWDH 348
Query: 270 TLHAW 274
TL W
Sbjct: 349 TLRVW 353
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGAD 73
+RS F +NS+ ++ D + SDD + RLYD+ + + + Y K+
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV-AIYSKES--- 282
Query: 74 CVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD----NRILRYFKGHKERVISLCMSPVN 129
SSV S L G + ++++D +R+ F GH+ RV +L +SP
Sbjct: 283 ---IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDG 338
Query: 130 DSFMSGSLDHSVRIW 144
+F SGS DH++R+W
Sbjct: 339 TAFCSGSWDHTLRVW 353
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 299
S+ N + +FT +++ SGDGT W++ + + ++G+ V CL AP
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 124/318 (38%), Gaps = 68/318 (21%)
Query: 28 GKINSLDFHRKDDLLVTASDDDSVRLYD-IVSAKLIKTTYHKKHGADCVCFTHHPSSVIC 86
GK+ SLD+ + + +V+AS D + +++ + S K H +C F + SV C
Sbjct: 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA-FAPNGQSVAC 125
Query: 87 S------TKYNLDSTGE-------------------SLRYLSMYDNRIL----------- 110
+ +NL S + S +Y+ + R++
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 111 -------------RYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILR 156
+ GH V+SL ++ +N + F+SGS D +VR+WDLR+ + + +
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRT 244
Query: 157 LRGRP----TVAFDQQGLVFAVAMEAGAIKLFDSRS------YDKGPFDTFLVGGDTAEV 206
G +V F G F + G +LFD R+ Y++ P + V
Sbjct: 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN---DNELPIV 301
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEAT-FTPDGQYVVS 264
+ FS G+ + +N + YV D E +L+ S + DG + +
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361
Query: 265 GSGDGTLHAWNINTRNEV 282
GS D L W + ++
Sbjct: 362 GSWDKNLKIWAFSGHRKI 379
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 15/211 (7%)
Query: 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV---AFDQ 167
R +GH +V SL +P + +S S D + +W+ + ++L P V AF
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC-PWVMECAFAP 118
Query: 168 QGLVFAVAMEAGAIKLFD-SRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 223
G A A +F+ S D+ P L G ++ D ++ L+T +
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGS 177
Query: 224 NNNIYVL-DAYGGEKRCGFSLE-PSPNTNTEATFTP---DGQYVVSGSGDGTLHAWNIN- 277
+ VL D G++ F E PS +T + + + +SGS D T+ W++
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 278 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
T V ++G+ G + +K+ P F S
Sbjct: 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLV 171
H V+SL ++P F+SG+ D S ++WD+R C+ G + + F G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNA 240
Query: 172 FAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
FA + +LFD R+ + D + G + + FS G+ +L + N
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCN 295
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275
V DA + R G L N + T DG V +GS D L WN
Sbjct: 296 VWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 28/144 (19%)
Query: 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGAD 73
VR F+ IN++ F + T SDD + RL+D+ + + + T H
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD----- 267
Query: 74 CVCFTHHPSSVICS-TKYNLDSTGESLRYLSMYDN---RILRYFK--------GHKERVI 121
++IC T + +G L L+ YD+ + K GH RV
Sbjct: 268 ---------NIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 122 SLCMSPVNDSFMSGSLDHSVRIWD 145
L ++ + +GS D ++IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 201 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260
G A++ + + D + +L + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 261 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLK 296
YV G D +N+ TR E+A G+ G ++C +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCR 150
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLV 171
H V+SL ++P F+SG+ D S ++WD+R C+ G + + F G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNA 240
Query: 172 FAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
FA + +LFD R+ + D + G + + FS G+ +L + N
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCN 295
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275
V DA + R G L N + T DG V +GS D L WN
Sbjct: 296 VWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 28/144 (19%)
Query: 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGAD 73
VR F+ IN++ F + T SDD + RL+D+ + + + T H
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD----- 267
Query: 74 CVCFTHHPSSVICS-TKYNLDSTGESLRYLSMYDN---RILRYFK--------GHKERVI 121
++IC T + +G L L+ YD+ + K GH RV
Sbjct: 268 ---------NIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 122 SLCMSPVNDSFMSGSLDHSVRIWD 145
L ++ + +GS D ++IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 201 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260
G A++ + + D + ++ + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 261 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLK 296
YV G D +N+ TR E+A G+ G ++C +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCR 150
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLV 171
H V+SL ++P F+SG+ D S ++WD+R C+ G + + F G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNA 240
Query: 172 FAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
FA + +LFD R+ + D + G + + FS G+ +L + N
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCN 295
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275
V DA + R G L N + T DG V +GS D L WN
Sbjct: 296 VWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 28/144 (19%)
Query: 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGAD 73
VR F+ IN++ F + T SDD + RL+D+ + + + T H
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD----- 267
Query: 74 CVCFTHHPSSVICS-TKYNLDSTGESLRYLSMYDN---RILRYFK--------GHKERVI 121
++IC T + +G L L+ YD+ + K GH RV
Sbjct: 268 ---------NIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 122 SLCMSPVNDSFMSGSLDHSVRIWD 145
L ++ + +GS D ++IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 201 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260
G A++ + + D + ++ + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 261 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLK 296
YV G D +N+ TR E+A G+ G ++C +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCR 150
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLV 171
H V+SL ++P F+SG+ D S ++WD+R C+ G + + F G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNA 240
Query: 172 FAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
FA + +LFD R+ + D + G + + FS G+ +L + N
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCN 295
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275
V DA + R G L N + T DG V +GS D L WN
Sbjct: 296 VWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 28/144 (19%)
Query: 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGAD 73
VR F+ IN++ F + T SDD + RL+D+ + + + T H
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD----- 267
Query: 74 CVCFTHHPSSVICS-TKYNLDSTGESLRYLSMYDN---RILRYFK--------GHKERVI 121
++IC T + +G L L+ YD+ + K GH RV
Sbjct: 268 ---------NIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 122 SLCMSPVNDSFMSGSLDHSVRIWD 145
L ++ + +GS D ++IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 201 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260
G A++ + + D + +L + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 261 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLK 296
YV G D +N+ TR E+A G+ G ++C +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCR 150
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLV 171
H V+SL ++P F+SG+ D S ++WD+R C+ G + + F G
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNA 251
Query: 172 FAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
FA + +LFD R+ + D + G + + FS G+ +L + N
Sbjct: 252 FATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCN 306
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275
V DA + R G L N + T DG V +GS D L WN
Sbjct: 307 VWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 28/144 (19%)
Query: 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGAD 73
VR F+ IN++ F + T SDD + RL+D+ + + + T H
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD----- 278
Query: 74 CVCFTHHPSSVICS-TKYNLDSTGESLRYLSMYDN---RILRYFK--------GHKERVI 121
++IC T + +G L L+ YD+ + K GH RV
Sbjct: 279 ---------NIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVS 327
Query: 122 SLCMSPVNDSFMSGSLDHSVRIWD 145
L ++ + +GS D ++IW+
Sbjct: 328 CLGVTDDGMAVATGSWDSFLKIWN 351
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 201 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260
G A++ + + D + ++ + + + + D+Y K L S + P G
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 121
Query: 261 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLK 296
YV G D +N+ TR E+A G+ G ++C +
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCR 161
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Query: 113 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQ 168
+GH+ V+S+ +S S SLD +R+WDL N Q I + P T+AF
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NGKQ-IKSIDAGPVDAWTLAFSPD 133
Query: 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228
A G + +F S K + + + I +S DGK + + I
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKK----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 288
+ D G + +LE TF+PD Q +V+ S DG + +++ N +G+
Sbjct: 190 IFDIATG--KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 289 IGVVACLKWAPRRAMF 304
V + + P F
Sbjct: 248 ASWVLNVAFCPDDTHF 263
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 22/190 (11%)
Query: 129 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFD-QQGLVFAVAMEAGA-IKLF 184
+++ ++GSLD V++W R L G V+ D L A + A I+L+
Sbjct: 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107
Query: 185 D------SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 238
D +S D GP D + + FS D + + T + + G+K
Sbjct: 108 DLENGKQIKSIDAGPVDAWT----------LAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 239 CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 298
+SL+ ++PDG+Y+ SG+ DG ++ ++I T + G+ + L ++
Sbjct: 158 --YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215
Query: 299 PRRAMFVAAS 308
P + V AS
Sbjct: 216 PDSQLLVTAS 225
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT 64
I SL F LLVTASDD +++YD+ A L T
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 18/163 (11%)
Query: 32 SLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICST--- 88
S+D + ++S D +RL+D+ + K IK+ A + F+ P S +T
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTH 142
Query: 89 --KYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 146
K N+ + S+ D R + ++S+ SP SG++D + I+D+
Sbjct: 143 VGKVNIFGVESGKKEYSL-DTR--------GKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 147 RVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSR 187
L P ++ F + A + G IK++D +
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVIC 86
G I S+ + L + + D + ++DI + KL+ T + H T P S
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL--EGHAMPIRSLTFSPDS--- 218
Query: 87 STKYNLDSTGESLRYLSMYDNR---ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRI 143
L T Y+ +YD + + GH V+++ P + F+S S D SV++
Sbjct: 219 ----QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV 274
Query: 144 WDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 183
WD+ C FD Q V+ V K+
Sbjct: 275 WDVGTRTCVHTF---------FDHQDQVWGVKYNGNGSKI 305
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 102/270 (37%), Gaps = 38/270 (14%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
+ + F LL + S D +++L+D + I+T + H V + ++ +++
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 212
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFM--SGSLDHSVRIWDLR 147
++++ + ++ F GH+E V + P D + S S D +VR+W +
Sbjct: 213 ------DKTIKMWEVQTGYCVKTFTGHREWV--RMVRPNQDGTLIASCSNDQTVRVWVVA 264
Query: 148 VNACQGILRLR----------------------GRPTVAFDQQGLVFAVAMEAGAIKLFD 185
C+ LR G T + G IK++D
Sbjct: 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 186 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 245
+ G LVG D V + F + GK +L + + V D KRC +L
Sbjct: 325 VST---GMCLMTLVGHDNW-VRGVLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLNA 378
Query: 246 SPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275
+ T F YVV+GS D T+ W
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 24/195 (12%)
Query: 115 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVF 172
GH+ V + PV +S S D ++++WD + L+ ++FD G +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI----- 227
A IKL+D + ++ + G V + +G ++ + + I
Sbjct: 166 ASCSADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 228 ---YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 284
Y + + G + + P+ DG + S S D T+ W + T+ A
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQ----------DGTLIASCSNDQTVRVWVVATKECKAE 271
Query: 285 WNGNIGVVACLKWAP 299
+ VV C+ WAP
Sbjct: 272 LREHRHVVECISWAP 286
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/300 (19%), Positives = 119/300 (39%), Gaps = 29/300 (9%)
Query: 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89
+ + FH ++V+AS+D +++++D + +T + F H ++ S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCS 169
Query: 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149
++ +++ +R GH V S+ + P D +S S D ++++W+++
Sbjct: 170 ADM-----TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Query: 150 AC-------QGILRLRGRP--------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDK--- 191
C + +R+ RP + + DQ V+ VA + +L + R +
Sbjct: 225 YCVKTFTGHREWVRMV-RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 283
Query: 192 -GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250
P ++ + K G +L + + I + D G C +L N
Sbjct: 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWV 341
Query: 251 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSV 310
F G++++S + D TL W+ + + N + V L + + A +V SV
Sbjct: 342 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH-KTAPYVVTGSV 400
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 41 LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100
L++ S D +++++D+ + + T + V F H I S + ++LR
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-HSGGKFILSC-----ADDKTLR 363
Query: 101 YLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 147
+ R ++ H+ V SL ++GS+D +V++W+ R
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 5 SLAELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT 64
S+A D + + + + +N +DF D +V+AS D ++++++ + + ++T
Sbjct: 234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT 291
Query: 65 TYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLC 124
K G C+ + ++ S S+ ++R + LR +GH+E V C
Sbjct: 292 LNGHKRGIACL---QYRDRLVVS-----GSSDNTIRLWDIECGACLRVLEGHEELV--RC 341
Query: 125 MSPVNDSFMSGSLDHSVRIWDL 146
+ N +SG+ D +++WDL
Sbjct: 342 IRFDNKRIVSGAYDGKIKVWDL 363
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 124 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 183
C+ + +SG D++++IWD C+ IL + V +++
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 197
Query: 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE----KRC 239
+D + G L+ A V ++F+N M+ + + +I V D +R
Sbjct: 198 WD---VNTGEMLNTLIHHCEA-VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 240 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 299
+ N D +Y+VS SGD T+ WN +T V NG+ +ACL++
Sbjct: 252 LVGHRAAVNV-----VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 306
Query: 300 RRAMFVAASSVLSFW 314
R + ++ + + W
Sbjct: 307 RLVVSGSSDNTIRLW 321
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 25/212 (11%)
Query: 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--------VNACQGILRLRGRPT 162
R GH V LC+ ++GS D +VR+WD+ ++ C+ +L LR
Sbjct: 167 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--- 221
Query: 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 222
G++ + + +I ++D S LVG A V + F D K ++ +
Sbjct: 222 ----NNGMMVTCSKDR-SIAVWDMASPTDITLRRVLVG-HRAAVNVVDF--DDKYIVSAS 273
Query: 223 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 282
+ I V + C F + + A + VVSGS D T+ W+I +
Sbjct: 274 GDRTIKVWNT----STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329
Query: 283 ACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 314
G+ +V C+++ +R + A + W
Sbjct: 330 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 51/162 (31%)
Query: 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICS 87
G I+ L+F+ + LL++ASDD ++R++ H +G CF H S++ +
Sbjct: 248 GPISVLEFNDTNKLLLSASDDGTLRIW------------HGGNGNSQNCFYGHSQSIVSA 295
Query: 88 TKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 147
+ +D +S S+D SVR+W L+
Sbjct: 296 SWVG-------------------------------------DDKVISCSMDGSVRLWSLK 318
Query: 148 VNACQGILRLRGRPTVA--FDQQGLVFAVAMEAGAIKLFDSR 187
N + + G P A Q G +AVA G + ++D +
Sbjct: 319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270
F+N +LL T +N+ ++ +K C ++ N+ F+PD + + S S DGT
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766
Query: 271 LHAWNINTRNE 281
L W++ + NE
Sbjct: 767 LRLWDVRSANE 777
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 46/259 (17%)
Query: 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVC----FTHHPS---SVICSTKYN 91
D ++V A + V L+DI ++ L+ + H C + H S C +N
Sbjct: 811 DKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Query: 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC 151
+DS L + D R GH V + SP SF++ S D ++R+W+ +
Sbjct: 869 IDSR------LKVADCR------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916
Query: 152 QGILRLRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC--- 207
+ L+ V F + + +V AV G ++L ++ G D +L + C
Sbjct: 917 NSAIVLKQEIDVVFQENETMVLAVDNIRG-LQLIAGKT---GQID-YLPEAQVSCCCLSP 971
Query: 208 ---DIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 263
+ F + DG ++ NN ++ + G K+ ++ FT DG+ ++
Sbjct: 972 HLEYVAFGDEDGAIKIIELPNNRVF--SSGVGHKKAVRHIQ----------FTADGKTLI 1019
Query: 264 SGSGDGTLHAWNINTRNEV 282
S S D + WN T + V
Sbjct: 1020 SSSEDSVIQVWNWQTGDYV 1038
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 109/282 (38%), Gaps = 53/282 (18%)
Query: 35 FHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94
F D + T S D V+++D + KL+ T +C FT+ + + L +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN-------KSNHLLLA 717
Query: 95 TGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC 151
TG + +L ++D GH V SP ++ S S D ++R+WD+R
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS--- 774
Query: 152 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 211
A ++ +K F S D P D ++ + C +
Sbjct: 775 ---------------------ANERKSINVKRFFLSSEDP-PEDVEVI----VKCC--SW 806
Query: 212 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT-----FTPDGQYVVSGS 266
S DG +++ N + + D + L +T +T F+P V
Sbjct: 807 SADGDKIIV-AAKNKVLLFDIHTS------GLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
+ WNI++R +VA G++ V + ++P + F+ AS
Sbjct: 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270
F+N +LL T +N+ ++ +K C ++ N+ F+PD + + S S DGT
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 773
Query: 271 LHAWNINTRNE 281
L W++ + NE
Sbjct: 774 LRLWDVRSANE 784
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 46/259 (17%)
Query: 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVC----FTHHPS---SVICSTKYN 91
D ++V A + V L+DI ++ L+ + H C + H S C +N
Sbjct: 818 DKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Query: 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC 151
+DS L + D R GH V + SP SF++ S D ++R+W+ +
Sbjct: 876 IDSR------LKVADCR------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 923
Query: 152 QGILRLRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC--- 207
+ L+ V F + + +V AV G ++L ++ G D +L + C
Sbjct: 924 NSAIVLKQEIDVVFQENETMVLAVDNIRG-LQLIAGKT---GQID-YLPEAQVSCCCLSP 978
Query: 208 ---DIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 263
+ F + DG ++ NN ++ + G K+ ++ FT DG+ ++
Sbjct: 979 HLEYVAFGDEDGAIKIIELPNNRVF--SSGVGHKKAVRHIQ----------FTADGKTLI 1026
Query: 264 SGSGDGTLHAWNINTRNEV 282
S S D + WN T + V
Sbjct: 1027 SSSEDSVIQVWNWQTGDYV 1045
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 109/282 (38%), Gaps = 53/282 (18%)
Query: 35 FHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94
F D + T S D V+++D + KL+ T +C FT+ + + L +
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN-------KSNHLLLA 724
Query: 95 TGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC 151
TG + +L ++D GH V SP ++ S S D ++R+WD+R
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS--- 781
Query: 152 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 211
A ++ +K F S D P D ++ + C +
Sbjct: 782 ---------------------ANERKSINVKRFFLSSEDP-PEDVEVI----VKCC--SW 813
Query: 212 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT-----FTPDGQYVVSGS 266
S DG +++ N + + D + L +T +T F+P V
Sbjct: 814 SADGDKIIV-AAKNKVLLFDIHTS------GLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
+ WNI++R +VA G++ V + ++P + F+ AS
Sbjct: 867 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 908
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/303 (19%), Positives = 117/303 (38%), Gaps = 33/303 (10%)
Query: 46 SDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKY--NLDSTGESLRYLS 103
S D +RL + + ++K Y+ K H +SVI ++ N TG + +
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIR 145
Query: 104 MYDN---RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR---- 156
+YD+ + L GH V +L + +SGS D +VR+WD++ C +
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNS 204
Query: 157 ------------LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY-------DKGPFDTF 197
++ T + D V+ + E+ + Y ++ P+
Sbjct: 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264
Query: 198 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257
++ G A V + S G ++ + +N + V D + +C + L + +
Sbjct: 265 VLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDV--AQXKCLYILSGHTDRIYSTIYDH 320
Query: 258 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317
+ + +S S D T+ W++ G+ +V L+ + + + AA + W N
Sbjct: 321 ERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 380
Query: 318 PSS 320
S
Sbjct: 381 DYS 383
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR----------VNACQGILRL 157
+ L GH +R+ S +S S D ++RIWDL A G+LRL
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Query: 158 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 191
+ V+ A G+I+ +D+ Y +
Sbjct: 361 SDKFLVS----------AAADGSIRGWDANDYSR 384
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/303 (19%), Positives = 118/303 (38%), Gaps = 33/303 (10%)
Query: 46 SDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKY--NLDSTGESLRYLS 103
S D +RL + + ++K Y+ K H +SVI ++ N TG + +
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIR 145
Query: 104 MYDN---RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR---- 156
+YD+ + L GH V +L + +SGS D +VR+WD++ C +
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNS 204
Query: 157 ------------LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY-------DKGPFDTF 197
++ T + D V+ + E+ + Y ++ P+
Sbjct: 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264
Query: 198 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257
++ G A V + S G ++ + +N + V D + +C + L + +
Sbjct: 265 VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV--AQMKCLYILSGHTDRIYSTIYDH 320
Query: 258 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317
+ + +S S D T+ W++ + G+ +V L+ + + + AA + W N
Sbjct: 321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 380
Query: 318 PSS 320
S
Sbjct: 381 DYS 383
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR----------VNACQGILRL 157
+ L GH +R+ S +S S+D ++RIWDL A G+LRL
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Query: 158 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 191
+ V+ A G+I+ +D+ Y +
Sbjct: 361 SDKFLVS----------AAADGSIRGWDANDYSR 384
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 14/177 (7%)
Query: 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFD 166
R +GH V + +S + +S S DHS+R+W+L+ CQ + G +VAF
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQ--YKFLGHTKDVLSVAFS 118
Query: 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTN 224
A+++++ + T G T V ++FS D ++ +
Sbjct: 119 PDNRQIVSGGRDNALRVWNVKGE---CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 225 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281
N + V D G R L+ N T T +PDG S DG W++ T+ E
Sbjct: 176 NLVKVWDLATG--RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL-TKGE 229
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 147
SLR ++ + + F GH + V+S+ SP N +SG D+++R+W+++
Sbjct: 89 HSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 13/164 (7%)
Query: 32 SLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS---SVICST 88
S+ F + +V+ D+++R+++ V + + T H C PS VI S
Sbjct: 114 SVAFSPDNRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 89 KYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV 148
++ ++ + R++ KGH V S+ +SP S D R+WDL
Sbjct: 173 GWD-----NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 149 NACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYD 190
+ G P + F A E G I++FD + D
Sbjct: 228 GEALSEM-AAGAPINQICFSPNRYWMCAATEKG-IRIFDLENKD 269
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 122/302 (40%), Gaps = 54/302 (17%)
Query: 37 RKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96
++++++V A D +R +++ + + Y + C C + H + D G
Sbjct: 937 QENEVMVLAVD--HIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFG-----DENG 989
Query: 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR 156
++ L + +NRI + HK+ V + + + +S S D +++W+ +++ C +
Sbjct: 990 -AIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC---IF 1045
Query: 157 LRGRPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 213
LRG D + L + + G +K+++ + +K F+ T CDI S+
Sbjct: 1046 LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEK--DFVCHQGTVLSCDI--SH 1101
Query: 214 DGKSMLLTTTNNN-----------IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 262
D T+ + ++ L + G RC + F+ D +
Sbjct: 1102 DATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRC-------------SAFSVDSTLL 1148
Query: 263 VSGSGDGTLHAWNINT----------RNEVACWNGNIGVVACLKWAPRRAMFVAASSVLS 312
+G +G + WN++ E A +G G V L ++P M ++A +
Sbjct: 1149 ATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG--GWVTDLCFSPDGKMLISAGGYIK 1206
Query: 313 FW 314
+W
Sbjct: 1207 WW 1208
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 23/169 (13%)
Query: 114 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFA 173
+GH V + SP SF++ S D ++R+W+ + + L+ V F + ++
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVL 944
Query: 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC------DIKFSND-GKSMLLTTTNNN 226
++L + R+ G D +L + C I F ++ G +L NN
Sbjct: 945 AVDHIRRLQLINGRT---GQID-YLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 227 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275
I+ S T FT D + ++S S D + WN
Sbjct: 1001 IFQ------------SRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270
F+N +LL T +++ ++ +K C ++ N+ F+PD + + S S DGT
Sbjct: 713 FTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGT 772
Query: 271 LHAWNINTRNE 281
L W+ + NE
Sbjct: 773 LKLWDATSANE 783
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 107/286 (37%), Gaps = 61/286 (21%)
Query: 35 FHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94
F D + T S D V++++ ++ +L+ T +C FT+ S+ + L +
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTN-------SSHHLLLA 723
Query: 95 TGESLRYLSMYD---NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC 151
TG S +L ++D GH V SP + S S D ++++WD
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD------ 777
Query: 152 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI-- 209
A A K + + + FL D E ++
Sbjct: 778 -----------------------ATSANERKSINVKQF-------FLNLEDPQEDMEVIV 807
Query: 210 ---KFSNDGKSMLLTTTNNNIYVLDAYG----GEKRCGFSLEPSPNTNTEATFTPDGQYV 262
+S DG + ++ N I++ D + GE G +T F+P
Sbjct: 808 KCCSWSADG-ARIMVAAKNKIFLFDIHTSGLLGEIHTGHH-----STIQYCDFSPQNHLA 861
Query: 263 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
V + WN ++R++VA G++ V + ++P + F+ +S
Sbjct: 862 VVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSS 907
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 110/263 (41%), Gaps = 27/263 (10%)
Query: 38 KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97
+D+++++ S D ++++++ + + I T Y H + C H V+ ++ D+T
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLHEKRVVSGSR---DAT-- 220
Query: 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL 157
LR + + L GH V C+ +SG+ D V++WD C L+
Sbjct: 221 -LRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 277
Query: 158 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 217
+ G+ +I+++D + G L G + + + K
Sbjct: 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWD---VETGNCIHTLTGHQS-----LTSGMELKD 329
Query: 218 MLLTTTN--NNIYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAW 274
+L + N + + + D G+ C +L+ P+ + + + +V++ S DGT+ W
Sbjct: 330 NILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Query: 275 NINT----RNEVACWNGNIGVVA 293
++ T RN V +G G V
Sbjct: 388 DLKTGEFIRNLVTLESGGSGGVV 410
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 51/210 (24%)
Query: 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 170
+ KGH + VI+ C+ + +SGS D+++++W C L G
Sbjct: 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL---------VGHTGG 161
Query: 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 230
V++ M D ++ G T + + G+ I+ L
Sbjct: 162 VWSSQMR-----------------DNIIISGSTDRTLKVWNAETGEC---------IHTL 195
Query: 231 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG 290
+ RC E + VVSGS D TL W+I T + G++
Sbjct: 196 YGHTSTVRCMHLHE---------------KRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 291 VVACLKWAPRRAMFVAASSVLSFWIPNPSS 320
V C+++ RR + A ++ W P +
Sbjct: 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETET 270
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 60/273 (21%)
Query: 42 LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101
+V+ SDD++++++ V+ K ++T G V + ++I S ST +L+
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG---VWSSQMRDNIIIS-----GSTDRTLKV 183
Query: 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP 161
+ + GH V CM +SGS D ++R+WD+ C +L
Sbjct: 184 WNAETGECIHTLYGHTSTV--RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL------ 235
Query: 162 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 221
G V AV +D R G +D F+V +V D +
Sbjct: 236 ------MGHVAAVRCVQ-----YDGRRVVSGAYD-FMV-----KVWDPE----------- 267
Query: 222 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281
T ++ L + TN + DG +VVSGS D ++ W++ T N
Sbjct: 268 -TETCLHTLQGH---------------TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 311
Query: 282 VACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 314
+ G+ + + ++ + A S + W
Sbjct: 312 IHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL 157
S+R + + GH+ ++ M ++ +SG+ D +V+IWD++ C L+
Sbjct: 300 SIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 158 --RGRPTVAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFLV----GGDTAEVCDIK 210
+ + V Q F + + + G +KL+D ++ G F LV GG V I+
Sbjct: 358 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT---GEFIRNLVTLESGGSGGVVWRIR 414
Query: 211 FSN 213
SN
Sbjct: 415 ASN 417
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 94/242 (38%), Gaps = 50/242 (20%)
Query: 74 CVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSP-VNDSF 132
CV T PSS + Y + D R+ +GH++ L +P +N
Sbjct: 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL----RGHQKEGYGLSWNPNLNGYL 197
Query: 133 MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 192
+S S DH++ +WD +NA R+ + +V VA LF S
Sbjct: 198 LSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS------ 249
Query: 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI----YVLDAYGGEKRCGFSLEPSPN 248
++D K M+ T NNN + +DA+ E C
Sbjct: 250 ------------------VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC--------- 282
Query: 249 TNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACWNGNIGVVACLKWAPRRAMFVA 306
+F P ++++ +GS D T+ W++ N + ++ + + + ++W+P +A
Sbjct: 283 ----LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338
Query: 307 AS 308
+S
Sbjct: 339 SS 340
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 38/215 (17%)
Query: 42 LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL-- 99
L++ASDD ++ L+DI + K+ FT H ++V+ ++L ESL
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGH-TAVVEDVAWHL--LHESLFG 248
Query: 100 -----RYLSMYDNRILRYFK------GHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 147
+ L ++D R K H V L +P ++ + +GS D +V +WDLR
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 148 VNACQGILRLRGRPTVAFDQQ-----GLVFAVAMEAGAIKLFD---------SRSYDKGP 193
N + F Q + A + + ++D + + GP
Sbjct: 309 -NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367
Query: 194 FD-TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 227
+ F+ GG TA++ D ++ + ++ + + +NI
Sbjct: 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 95/234 (40%), Gaps = 25/234 (10%)
Query: 42 LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101
L+ + ++ ++D+ + C P S +C ++ S G ++
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC---FSCCSDG-NIAV 167
Query: 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-------NACQGI 154
+++ ++R F+GH + + +S +G LD++VR WDLR + I
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 155 LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 214
L PT G AV ME+ +++ DK + + + V +KF+
Sbjct: 228 FSLGYCPT------GEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYC 276
Query: 215 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 268
GK + T +N +L+A+ ++ + D +Y+V+GSGD
Sbjct: 277 GKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Query: 179 GAIKLFD-SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 237
G +K++D S +K P + K DG ++++ + + + D
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 238 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL 295
R L S +PD + S DG + W+++ + V + G+ +C+
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 94/242 (38%), Gaps = 50/242 (20%)
Query: 74 CVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSP-VNDSF 132
CV T PSS + Y + D R+ +GH++ L +P +N
Sbjct: 144 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL----RGHQKEGYGLSWNPNLNGYL 199
Query: 133 MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 192
+S S DH++ +WD +NA R+ + +V VA LF S
Sbjct: 200 LSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS------ 251
Query: 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI----YVLDAYGGEKRCGFSLEPSPN 248
++D K M+ T NNN + +DA+ E C
Sbjct: 252 ------------------VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC--------- 284
Query: 249 TNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACWNGNIGVVACLKWAPRRAMFVA 306
+F P ++++ +GS D T+ W++ N + ++ + + + ++W+P +A
Sbjct: 285 ----LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340
Query: 307 AS 308
+S
Sbjct: 341 SS 342
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 38/215 (17%)
Query: 42 LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL-- 99
L++ASDD ++ L+DI + K+ FT H ++V+ ++L ESL
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGH-TAVVEDVAWHL--LHESLFG 250
Query: 100 -----RYLSMYDNRILRYFK------GHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 147
+ L ++D R K H V L +P ++ + +GS D +V +WDLR
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 148 VNACQGILRLRGRPTVAFDQQ-----GLVFAVAMEAGAIKLFD---------SRSYDKGP 193
N + F Q + A + + ++D + + GP
Sbjct: 311 -NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 369
Query: 194 FD-TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 227
+ F+ GG TA++ D ++ + ++ + + +NI
Sbjct: 370 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 404
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 94/242 (38%), Gaps = 50/242 (20%)
Query: 74 CVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSP-VNDSF 132
CV T PSS + Y + D R+ +GH++ L +P +N
Sbjct: 146 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL----RGHQKEGYGLSWNPNLNGYL 201
Query: 133 MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 192
+S S DH++ +WD +NA R+ + +V VA LF S
Sbjct: 202 LSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS------ 253
Query: 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI----YVLDAYGGEKRCGFSLEPSPN 248
++D K M+ T NNN + +DA+ E C
Sbjct: 254 ------------------VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC--------- 286
Query: 249 TNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACWNGNIGVVACLKWAPRRAMFVA 306
+F P ++++ +GS D T+ W++ N + ++ + + + ++W+P +A
Sbjct: 287 ----LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Query: 307 AS 308
+S
Sbjct: 343 SS 344
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 38/215 (17%)
Query: 42 LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL-- 99
L++ASDD ++ L+DI + K+ FT H ++V+ ++L ESL
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGH-TAVVEDVAWHL--LHESLFG 252
Query: 100 -----RYLSMYDNRILRYFK------GHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 147
+ L ++D R K H V L +P ++ + +GS D +V +WDLR
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
Query: 148 VNACQGILRLRGRPTVAFDQQ-----GLVFAVAMEAGAIKLFD---------SRSYDKGP 193
N + F Q + A + + ++D + + GP
Sbjct: 313 -NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 371
Query: 194 FD-TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 227
+ F+ GG TA++ D ++ + ++ + + +NI
Sbjct: 372 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 406
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 114/304 (37%), Gaps = 64/304 (21%)
Query: 35 FHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHP----SSVICSTK- 89
F + + ++ SDD +R+++ + G V F HP S + TK
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT------------GEKVVDFEAHPDYIRSIAVHPTKP 110
Query: 90 YNLDSTGESLRYLSMYDNR--ILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDL 146
Y L + + L ++N + + F+GH+ V+ + +P + S F SG LD +V++W L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 147 RVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
G+ T F E G + D P+
Sbjct: 171 ------------GQSTPNF-----TLTTGQERG-VNYVDYYPLPDKPY------------ 200
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
M+ + + I + D K C +LE + + A F P ++SGS
Sbjct: 201 -----------MITASDDLTIKIWDYQ--TKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-RAMFVAASSVLSFWIPNPSSNSTDE 325
DGTL WN +T N + C+ P R ++A+ F + + ++
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTL 307
Query: 326 STDP 329
S DP
Sbjct: 308 SLDP 311
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 63/252 (25%)
Query: 35 FHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHP----SSVICSTK- 89
F + + ++ SDD +R+++ + G V F HP S + TK
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT------------GEKVVDFEAHPDYIRSIAVHPTKP 110
Query: 90 YNLDSTGESLRYLSMYDNR--ILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDL 146
Y L + + L ++N + + F+GH+ V+ + +P + S F SG LD +V++W L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 147 RVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
G+ T F E G + D P+
Sbjct: 171 ------------GQSTPNF-----TLTTGQERG-VNYVDYYPLPDKPY------------ 200
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
M+ + + I + D K C +LE + + A F P ++SGS
Sbjct: 201 -----------MITASDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 267 GDGTLHAWNINT 278
DGTL WN +T
Sbjct: 248 EDGTLKIWNSST 259
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/301 (18%), Positives = 111/301 (36%), Gaps = 51/301 (16%)
Query: 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVC 76
+ + FS+ ++ +DFH + ++T V L++ + +++ +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 77 FTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGS 136
F + +I + S +R + + F+ H + + S+ + P +SGS
Sbjct: 63 FIARKNWII------VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 137 LDHSVRIWDLRVN-ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 195
D +V++W+ N A + + V VA F S D+
Sbjct: 117 DDLTVKLWNWENNWALEQTFE---------GHEHFVMCVAFNPKDPSTFASGCLDR---- 163
Query: 196 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255
T +V + S + LTT G++R ++ P
Sbjct: 164 -------TVKVWSLGQST--PNFTLTT------------GQERGVNYVDYYP-------- 194
Query: 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSF 313
PD Y+++ S D T+ W+ T++ VA G++ V+ + P + ++ S L
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 314 W 314
W
Sbjct: 255 W 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 63/252 (25%)
Query: 35 FHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHP----SSVICSTK- 89
F + + ++ SDD +R+++ + G V F HP S + TK
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT------------GEKVVDFEAHPDYIRSIAVHPTKP 110
Query: 90 YNLDSTGESLRYLSMYDNR--ILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDL 146
Y L + + L ++N + + F+GH+ V+ + +P + S F SG LD +V++W L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 147 RVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
G+ T F E G + D P+
Sbjct: 171 ------------GQSTPNF-----TLTTGQERG-VNYVDYYPLPDKPY------------ 200
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
M+ + + I + D K C +LE + + A F P ++SGS
Sbjct: 201 -----------MITASDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 267 GDGTLHAWNINT 278
DGTL WN +T
Sbjct: 248 EDGTLKIWNSST 259
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/301 (18%), Positives = 111/301 (36%), Gaps = 51/301 (16%)
Query: 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVC 76
+ + FS+ ++ +DFH + ++T V L++ + +++ +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 77 FTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGS 136
F + +I + S +R + + F+ H + + S+ + P +SGS
Sbjct: 63 FIARKNWII------VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 137 LDHSVRIWDLRVN-ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 195
D +V++W+ N A + + V VA F S D+
Sbjct: 117 DDLTVKLWNWENNWALEQTFE---------GHEHFVMCVAFNPKDPSTFASGCLDR---- 163
Query: 196 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255
T +V + S + LTT G++R ++ P
Sbjct: 164 -------TVKVWSLGQST--PNFTLTT------------GQERGVNYVDYYP-------- 194
Query: 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSF 313
PD Y+++ S D T+ W+ T++ VA G++ V+ + P + ++ S L
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 314 W 314
W
Sbjct: 255 W 255
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 63/252 (25%)
Query: 35 FHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHP----SSVICSTK- 89
F + + ++ SDD +R+++ + G V F HP S + TK
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT------------GEKVVDFEAHPDYIRSIAVHPTKP 110
Query: 90 YNLDSTGESLRYLSMYDNR--ILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDL 146
Y L + + L ++N + + F+GH+ V+ + +P + S F SG LD +V++W L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 147 RVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
G+ T F E G + D P+
Sbjct: 171 ------------GQSTPNF-----TLTTGQERG-VNYVDYYPLPDKPY------------ 200
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
M+ + + I + D K C +LE + + A F P ++SGS
Sbjct: 201 -----------MITASDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 267 GDGTLHAWNINT 278
DGTL WN +T
Sbjct: 248 EDGTLKIWNSST 259
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/311 (18%), Positives = 116/311 (37%), Gaps = 49/311 (15%)
Query: 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVC 76
+ + FS+ ++ +DFH + ++T V L++ + +++ +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 77 FTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGS 136
F + +I S +R + + F+ H + + S+ + P +SGS
Sbjct: 63 FIARKNWIIVG------SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 137 LDHSVRIWDLRVN-ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 195
D +V++W+ N A + + V VA F S D+
Sbjct: 117 DDLTVKLWNWENNWALEQTFE---------GHEHFVMCVAFNPKDPSTFASGCLDR---- 163
Query: 196 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255
T +V + S + LTT G++R ++ P
Sbjct: 164 -------TVKVWSLGQST--PNFTLTT------------GQERGVNYVDYYP-------- 194
Query: 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 315
PD Y+++ S D T+ W+ T++ VA G++ V+ + P + ++ S + I
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 316 PNPSSNSTDES 326
N S+ +++
Sbjct: 255 WNSSTYKVEKT 265
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE-- 97
D++++AS D ++ ++ + + T Y A +H S V+ S+ +G
Sbjct: 52 DMILSASRDKTIIMWKLTRDE---TNYGIPQRA-LRGHSHFVSDVVISSDGQFALSGSWD 107
Query: 98 -SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 145
+LR + R F GH + V+S+ S N +SGS D ++++W+
Sbjct: 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)
Query: 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 170
R +GH V + +S +SGS D ++R+WDL R V +
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT-------RRFVGHTKD-- 130
Query: 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT----TTNNN 226
V +VA + D+R G D + +T VC ++ S ++ + N++
Sbjct: 131 VLSVAFSS------DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 227 IYVLDAYGGEK--------RCGFSLEPSPNTN--TEATFTPDGQYVVSGSGDGTLHAWNI 276
++ + G +K C +T T +PDG SG DG W++
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Query: 277 NTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
N + +G ++ L ++P R AA+
Sbjct: 245 NEGKHLYTLDGG-DIINALCFSPNRYWLCAAT 275
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE-- 97
D++++AS D ++ ++ + + T Y A +H S V+ S+ +G
Sbjct: 29 DMILSASRDKTIIMWKLTRDE---TNYGIPQRA-LRGHSHFVSDVVISSDGQFALSGSWD 84
Query: 98 -SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 145
+LR + R F GH + V+S+ S N +SGS D ++++W+
Sbjct: 85 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)
Query: 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 170
R +GH V + +S +SGS D ++R+WDL R V +
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT-------RRFVGHTKD-- 107
Query: 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT----TTNNN 226
V +VA + D+R G D + +T VC ++ S ++ + N++
Sbjct: 108 VLSVAFSS------DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 227 IYVLDAYGGEK--------RCGFSLEPSPNTN--TEATFTPDGQYVVSGSGDGTLHAWNI 276
++ + G +K C +T T +PDG SG DG W++
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Query: 277 NTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308
N + +G ++ L ++P R AA+
Sbjct: 222 NEGKHLYTLDGG-DIINALCFSPNRYWLCAAT 252
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 15/196 (7%)
Query: 11 DETVR--SMAMAAIFSDFGG---KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
D+T+R + + F G ++ S+ F + +++A + ++L++I+ +
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 66 YHKKHGADCVCFTHHP----SSVICSTKYNLDSTGESLRYLSMYDNRILRY-FKGHKERV 120
+ H C + P ++ + S G R N +RY FK H+ V
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNV 216
Query: 121 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT---VAFDQQGLVFAVAME 177
L +SP +G D + IWD+ +N T +AF+ + AV +
Sbjct: 217 NHLSISPNGKYIATGGKDKKLLIWDI-LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTD 275
Query: 178 AGAIKLFDSRSYDKGP 193
G +K+F+ + K P
Sbjct: 276 QG-VKIFNLMTQSKAP 290
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 70/196 (35%), Gaps = 41/196 (20%)
Query: 113 FKGHKERVISLCM---------SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 163
+GH + V S+ SPV +SGS D +V IW L G + +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPV---LISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 164 AFDQ--------QGLVFAVAMEA-GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 214
+ Q FA++ ++L+D R+ + F+ G +EV + FS D
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRFV--GHQSEVYSVAFSPD 129
Query: 215 GKSMLLTTTNNNIYVLDAYGGEKRCGFS-------------LEPSPNTNTEATFTPDGQY 261
+ +L I + + G C FS + SP + P Y
Sbjct: 130 NRQILSAGAEREIKLWNILG---ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 262 VVSGSGDGTLHAWNIN 277
S DG L WN N
Sbjct: 187 FASVGWDGRLKVWNTN 202
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 5/165 (3%)
Query: 114 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQG 169
+GH+ V + SP + S S D + IW + + + L G +VA+ G
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 229
+ A ++ +++ D+ + L T +V + + + + + ++ + +
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Query: 230 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 274
+ C +LE +T F P GQ + S S D T+ W
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIK-TTYHKKHGADCVCFTHHPSSVICS 87
++ S+ + +LL T S D SV ++++ + + H D HPS + +
Sbjct: 107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166
Query: 88 TKYNLDSTGESLRYLSMYDNRIL-RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 144
+ D+ Y D+ + +GH+ V SL P S S D +VRIW
Sbjct: 167 SASYDDTVK---LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 4/149 (2%)
Query: 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 222
+A++ G + A I+++ + D + L G V + +S G + +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEG-DSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 223 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 282
+ + + C +LE N + P G + + S D ++ W ++ +E
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 283 AC---WNGNIGVVACLKWAPRRAMFVAAS 308
C N + V + W P + + +AS
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASAS 169
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 106 DNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 147
D + L + HK++V + ++P D F+ + S+D +V+IWDLR
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 106 DNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 147
D + L + HK++V + ++P D F+ + S+D +V+IWDLR
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 106 DNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 147
D + L + HK++V + ++P D F+ + S+D +V+IWDLR
Sbjct: 240 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 282
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHP---SSVICSTKYNLDSTG 96
D++V+AS D S+ L+ + T K +G T H V+ S+ +G
Sbjct: 396 DIIVSASRDKSIILWKL-------TKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSG 448
Query: 97 E---SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 145
LR + R F GH + V+S+ S N +S S D ++++W+
Sbjct: 449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 12/204 (5%)
Query: 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--VNACQGILRLRGRPTVAFDQQ 168
R GH V + +S +SGS D +R+WDL V+ + + + +VAF
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE--VCDIKFSND--GKSMLLTTTN 224
A IKL+++ K T GG+ V ++FS + +++ + +
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 225 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 284
+ V + + R +L + +PDG SG DG + W++ ++
Sbjct: 541 KTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
Query: 285 WNGNIGVVACLKWAPRRAMFVAAS 308
N V+ L ++P R AA+
Sbjct: 599 LEAN-SVIHALCFSPNRYWLCAAT 621
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 42 LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN-----LDSTG 96
+V+AS D +V+++++ + KL T H P +C++ L
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTL--AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Query: 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 147
E + S+ N ++ +LC SP N ++ + +H ++IWDL
Sbjct: 592 EGKKLYSLEANSVIH----------ALCFSP-NRYWLCAATEHGIKIWDLE 631
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 23/202 (11%)
Query: 113 FKGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDL-RVNACQGIL--RLRGR----PTV 163
+ H + V ++ +P++ D +S S D S+ +W L + + G+ RL G V
Sbjct: 378 MRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 164 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 223
G G ++L+D + T G T +V + FS D + ++ +
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAA----GVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 224 NNNIYVLDAYGGEKRCGFSLEPSPNTNTE----ATFTPD--GQYVVSGSGDGTLHAWNIN 277
+ I + + G C +++ + + F+P+ +VS S D T+ WN++
Sbjct: 493 DRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 278 TRNEVACWNGNIGVVACLKWAP 299
+ G+ G V+ + +P
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSP 571
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 100/260 (38%), Gaps = 59/260 (22%)
Query: 77 FTHHPSSVICSTKYNL---DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFM 133
++HH S V STK+ L + G ++ + +GH++ ++++ SP D +
Sbjct: 145 YSHHMSPV--STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL 202
Query: 134 -SGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 192
+ S D V++WD+R G L + DQ + A+E+
Sbjct: 203 ATASADSRVKLWDVR--RASGCL-------ITLDQHNGKKSQAVESANT----------- 242
Query: 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-------KRC-----G 240
+V + F++DG +L T+N + + ++ GE K C G
Sbjct: 243 --------AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294
Query: 241 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 300
S ++E F P G T+ + + + ++ G+ V C +
Sbjct: 295 LKFTVSCGCSSEFVFVPYGS---------TIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345
Query: 301 RAMFVAAS---SVLSFWIPN 317
+ S ++L+ W+P+
Sbjct: 346 FQELYSGSRDCNILA-WVPS 364
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHK--KHGA 72
+S A+ + + GK+N L F L+T D+ +RL++ + + Y K +
Sbjct: 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK 292
Query: 73 DCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF 132
+ FT S CS+++ G ++ ++Y + KGH + V
Sbjct: 293 KGLKFT---VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349
Query: 133 MSGSLDHSVRIW 144
SGS D ++ W
Sbjct: 350 YSGSRDCNILAW 361
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 113 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 144
KGH RV+SL MSP + S + D ++R+W
Sbjct: 371 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 97/265 (36%), Gaps = 37/265 (13%)
Query: 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVIC 86
G I+S+ + ++ + L + V+L+D+ K ++ T H S+ +
Sbjct: 158 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------MTSH-SARVG 204
Query: 87 STKYN--LDSTGESLRYLSMYDNRILRY----FKGHKERVISLCMSPVNDSFMSGSLDHS 140
S +N + S+G ++ +D R+ + GH + V L +P SG D+
Sbjct: 205 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 264
Query: 141 VRIWDLRVNACQGILRLRGRPTVAFDQ-QGLVFAVAM---------EAGAIKLFDSRSYD 190
V +W + P F Q QG V AVA G R ++
Sbjct: 265 VNVWPSAPGEGGWV------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 318
Query: 191 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNT 249
++VC I +S K ++ N V+ Y + L+ +
Sbjct: 319 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA-ELKGHTSR 377
Query: 250 NTEATFTPDGQYVVSGSGDGTLHAW 274
T +PDG V S + D TL W
Sbjct: 378 VLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 113 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 144
KGH RV+SL MSP + S + D ++R+W
Sbjct: 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 97/265 (36%), Gaps = 37/265 (13%)
Query: 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVIC 86
G I+S+ + ++ + L + V+L+D+ K ++ T H S+ +
Sbjct: 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------MTSH-SARVG 193
Query: 87 STKYN--LDSTGESLRYLSMYDNRILRY----FKGHKERVISLCMSPVNDSFMSGSLDHS 140
S +N + S+G ++ +D R+ + GH + V L +P SG D+
Sbjct: 194 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253
Query: 141 VRIWDLRVNACQGILRLRGRPTVAFDQ-QGLVFAVAM---------EAGAIKLFDSRSYD 190
V +W + P F Q QG V AVA G R ++
Sbjct: 254 VNVWPSAPGEGGWV------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307
Query: 191 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNT 249
++VC I +S K ++ N V+ Y + L+ +
Sbjct: 308 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA-ELKGHTSR 366
Query: 250 NTEATFTPDGQYVVSGSGDGTLHAW 274
T +PDG V S + D TL W
Sbjct: 367 VLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 113 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 144
KGH RV+SL MSP + S + D ++R+W
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 97/265 (36%), Gaps = 37/265 (13%)
Query: 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVIC 86
G I+S+ + ++ + L + V+L+D+ K ++ T H S+ +
Sbjct: 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------MTSH-SARVG 113
Query: 87 STKYN--LDSTGESLRYLSMYDNRILRY----FKGHKERVISLCMSPVNDSFMSGSLDHS 140
S +N + S+G ++ +D R+ + GH + V L +P SG D+
Sbjct: 114 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173
Query: 141 VRIWDLRVNACQGILRLRGRPTVAFDQ-QGLVFAVAM---------EAGAIKLFDSRSYD 190
V +W + P F Q QG V AVA G R ++
Sbjct: 174 VNVWPSAPGEGGWV------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227
Query: 191 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNT 249
++VC I +S K ++ N V+ Y + L+ +
Sbjct: 228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA-ELKGHTSR 286
Query: 250 NTEATFTPDGQYVVSGSGDGTLHAW 274
T +PDG V S + D TL W
Sbjct: 287 VLSLTMSPDGATVASAAADETLRLW 311
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 31/186 (16%)
Query: 114 KGHKERVISLCMSPVN------DSFMSGSLDHSVRIWDLR--------VNACQGILRLRG 159
KGHKE + ++ ++GS D +V++WD R + QG + R
Sbjct: 108 KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK-RD 166
Query: 160 RPTVAF----DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 215
TVAF +Q+ V + G IKLFD R+ ++T + G VC ++F
Sbjct: 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNG----VCSLEFDRKD 221
Query: 216 KSM---LLTTTNNNIYVLDAYGGEKRCGF---SLEPSPNTNTEATFTPDG-QYVVSGSGD 268
SM + T+ +V D GF S + +T + P + ++ G
Sbjct: 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281
Query: 269 GTLHAW 274
G LH W
Sbjct: 282 GGLHLW 287
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 48/136 (35%)
Query: 16 SMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADC 74
+M + G IN L FH +D +LL++ S D ++RL++I + L+
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA----------- 188
Query: 75 VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMS 134
I +GH++ V+S + + MS
Sbjct: 189 ----------------------------------IFGGVEGHRDEVLSADYDLLGEKIMS 214
Query: 135 GSLDHSVRIWDLRVNA 150
+DHS+++W R+N+
Sbjct: 215 CGMDHSLKLW--RINS 228
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 105/283 (37%), Gaps = 69/283 (24%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS-----SVICSTKYNLDS 94
+LL++AS D + ++S KL T +K G F H ++ Y L +
Sbjct: 31 NLLLSASRDKT-----LISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 95 TGE-SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG 153
+ + +LR + + F GHK V+S+ + +SGS D ++++W ++
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 154 IL-------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
+L ++R P D + + AG K+ + + ++ + +G
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTI---ISAGNDKMVKAWNLNQFQIEADFIG------ 194
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
N+NI L T +PDG + S
Sbjct: 195 ----------------HNSNINTL-----------------------TASPDGTLIASAG 215
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309
DG + WN+ + + + V + L ++P R AA++
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 257
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%)
Query: 11 DETVR--SMAMAAIFSDFGGK---INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
D+T+R +A + F G + S+D +K ++++ S D +++++ I L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTG--ESLRYLSMYDNRILRYFKGHKERVISL 123
H + P+ + S G + ++ ++ +I F GH + +L
Sbjct: 146 GHNDWVSQVRVV---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 124 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIK 182
SP S D + +W+L L + ++AF A A G IK
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IK 261
Query: 183 LF--DSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKSMLLTTTNNNIYV 229
+F D + F AE + +S DG+++ T+N I V
Sbjct: 262 VFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 105/283 (37%), Gaps = 69/283 (24%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS-----SVICSTKYNLDS 94
+LL++AS D + ++S KL T +K G F H ++ Y L +
Sbjct: 31 NLLLSASRDKT-----LISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 95 TGE-SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG 153
+ + +LR + + F GHK V+S+ + +SGS D ++++W ++
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 154 IL-------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
+L ++R P D + + AG K+ + + ++ + +G
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTI---ISAGNDKMVKAWNLNQFQIEADFIG------ 194
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
N+NI L T +PDG + S
Sbjct: 195 ----------------HNSNINTL-----------------------TASPDGTLIASAG 215
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309
DG + WN+ + + + V + L ++P R AA++
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 257
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%)
Query: 11 DETVR--SMAMAAIFSDFGGK---INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
D+T+R +A + F G + S+D +K ++++ S D +++++ I L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTG--ESLRYLSMYDNRILRYFKGHKERVISL 123
H + P+ + S G + ++ ++ +I F GH + +L
Sbjct: 146 GHNDWVSQVRVV---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 124 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIK 182
SP S D + +W+L L + ++AF A A G IK
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IK 261
Query: 183 LF--DSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKSMLLTTTNNNIYV 229
+F D + F AE + +S DG+++ T+N I V
Sbjct: 262 VFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 105/283 (37%), Gaps = 69/283 (24%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS-----SVICSTKYNLDS 94
+LL++AS D + ++S KL T +K G F H ++ Y L +
Sbjct: 31 NLLLSASRDKT-----LISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 95 TGE-SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG 153
+ + +LR + + F GHK V+S+ + +SGS D ++++W ++
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 154 IL-------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
+L ++R P D + + AG K+ + + ++ + +G
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTI---ISAGNDKMVKAWNLNQFQIEADFIG------ 194
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
N+NI L T +PDG + S
Sbjct: 195 ----------------HNSNINTL-----------------------TASPDGTLIASAG 215
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309
DG + WN+ + + + V + L ++P R AA++
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 257
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 16/231 (6%)
Query: 11 DETVR--SMAMAAIFSDFGGK---INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
D+T+R +A + F G + S+D +K ++++ S D +++++ I L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTG--ESLRYLSMYDNRILRYFKGHKERVISL 123
H + P+ + S G + ++ ++ +I F GH + +L
Sbjct: 146 GHNDWVSQVRVV---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 124 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIK 182
SP S D + +W+L L + ++AF A A G IK
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IK 261
Query: 183 LFD-SRSY---DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 229
+F Y D P + +S DG+++ T+N I V
Sbjct: 262 VFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 105/283 (37%), Gaps = 69/283 (24%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS-----SVICSTKYNLDS 94
+LL++AS D + ++S KL T +K G F H ++ Y L +
Sbjct: 31 NLLLSASRDKT-----LISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 95 TGE-SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG 153
+ + +LR + + F GHK V+S+ + +SGS D ++++W ++
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 154 IL-------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
+L ++R P D + + AG K+ + + ++ + +G
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTI---ISAGNDKMVKAWNLNQFQIEADFIG------ 194
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
N+NI L T +PDG + S
Sbjct: 195 ----------------HNSNINTL-----------------------TASPDGTLIASAG 215
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309
DG + WN+ + + + V + L ++P R AA++
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 257
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%)
Query: 11 DETVR--SMAMAAIFSDFGGK---INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
D+T+R +A + F G + S+D +K ++++ S D +++++ I L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTG--ESLRYLSMYDNRILRYFKGHKERVISL 123
H + P+ + S G + ++ ++ +I F GH + +L
Sbjct: 146 GHNDWVSQVRVV---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 124 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIK 182
SP S D + +W+L L + ++AF A A G IK
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IK 261
Query: 183 LF--DSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKSMLLTTTNNNIYV 229
+F D + F AE + +S DG+++ T+N I V
Sbjct: 262 VFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 105/283 (37%), Gaps = 69/283 (24%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS-----SVICSTKYNLDS 94
+LL++AS D + ++S KL T +K G F H ++ Y L +
Sbjct: 25 NLLLSASRDKT-----LISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 77
Query: 95 TGE-SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG 153
+ + +LR + + F GHK V+S+ + +SGS D ++++W ++
Sbjct: 78 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 137
Query: 154 IL-------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206
+L ++R P D + + AG K+ + + ++ + +G
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTI---ISAGNDKMVKAWNLNQFQIEADFIG------ 188
Query: 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266
N+NI L T +PDG + S
Sbjct: 189 ----------------HNSNINTL-----------------------TASPDGTLIASAG 209
Query: 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309
DG + WN+ + + + V + L ++P R AA++
Sbjct: 210 KDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 251
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%)
Query: 11 DETVR--SMAMAAIFSDFGGK---INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
D+T+R +A + F G + S+D +K ++++ S D +++++ I L
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 139
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTG--ESLRYLSMYDNRILRYFKGHKERVISL 123
H + P+ + S G + ++ ++ +I F GH + +L
Sbjct: 140 GHNDWVSQVRVV---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 196
Query: 124 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIK 182
SP S D + +W+L L + ++AF A A G IK
Sbjct: 197 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IK 255
Query: 183 LF--DSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKSMLLTTTNNNIYV 229
+F D + F AE + +S DG+++ T+N I V
Sbjct: 256 VFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 306
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 48/136 (35%)
Query: 16 SMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADC 74
+M + G IN L FH +D +LL++ S D ++RL++I + L+
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA----------- 151
Query: 75 VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMS 134
I +GH++ V+S + + MS
Sbjct: 152 ----------------------------------IFGGVEGHRDEVLSADYDLLGEKIMS 177
Query: 135 GSLDHSVRIWDLRVNA 150
+DHS+++W R+N+
Sbjct: 178 CGMDHSLKLW--RINS 191
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 48/136 (35%)
Query: 16 SMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADC 74
+M + G IN L FH +D +LL++ S D ++RL++I + L+
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA----------- 147
Query: 75 VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMS 134
I +GH++ V+S + + MS
Sbjct: 148 ----------------------------------IFGGVEGHRDEVLSADYDLLGEKIMS 173
Query: 135 GSLDHSVRIWDLRVNA 150
+DHS+++W R+N+
Sbjct: 174 CGMDHSLKLW--RINS 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 48/136 (35%)
Query: 16 SMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADC 74
+M + G IN L FH +D +LL++ S D ++RL++I + L+
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA----------- 151
Query: 75 VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMS 134
I +GH++ V+S + + MS
Sbjct: 152 ----------------------------------IFGGVEGHRDEVLSADYDLLGEKIMS 177
Query: 135 GSLDHSVRIWDLRVNA 150
+DHS+++W R+N+
Sbjct: 178 CGMDHSLKLW--RINS 191
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 48/136 (35%)
Query: 16 SMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADC 74
+M + G IN L FH +D +LL++ S D ++RL++I + L+
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA----------- 152
Query: 75 VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMS 134
I +GH++ V+S + + MS
Sbjct: 153 ----------------------------------IFGGVEGHRDEVLSADYDLLGEKIMS 178
Query: 135 GSLDHSVRIWDLRVNA 150
+DHS+++W R+N+
Sbjct: 179 CGMDHSLKLW--RINS 192
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS-----SVICSTKYNLDS 94
+LL++AS D + ++S KL T +K G F H ++ Y L +
Sbjct: 31 NLLLSASRDKT-----LISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 95 TGE-SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 147
+ + +LR + + F GHK V S+ + +SGS D ++++W ++
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 26/236 (11%)
Query: 11 DETVR--SMAMAAIFSDFGGK---INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65
D+T+R +A + F G + S+D +K +++ S D +++++ I L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLL 145
Query: 66 YHKKHGADCVCFTHHPSSVICSTKYNLDST-------GESLRYLSMYDNRILRYFKGHKE 118
H D V V+ + K + DS + ++ ++ +I F GH
Sbjct: 146 GHN----DWVSQVR----VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNS 197
Query: 119 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAME 177
+ +L SP S D + +W+L L + ++AF A A
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 178 AGAIKLF--DSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKSMLLTTTNNNIYV 229
G IK+F D + F AE + +S DG+++ T+N I V
Sbjct: 258 TG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 254 TFTPDGQYVVSGSGDGTLHAWNINT 278
T T DG Y +S S D TL W++ T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 80/203 (39%), Gaps = 46/203 (22%)
Query: 113 FKGHKERVISLCM-SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 171
+GH++ L S ++ +S S DH+V +WD+ +G ++ + +V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG--KIVDAKAIFTGHSAVV 232
Query: 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 227
VA LF S ++D K M+ T +N
Sbjct: 233 EDVAWHLLHESLFGS------------------------VADDQKLMIWDTRSNTTSKPS 268
Query: 228 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 285
+++DA+ E C +F P ++++ +GS D T+ W++ N + ++ +
Sbjct: 269 HLVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 286 NGNIGVVACLKWAPRRAMFVAAS 308
+ + + W+P +A+S
Sbjct: 316 ESHKDEIFQVHWSPHNETILASS 338
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 92/242 (38%)
Query: 42 LVTASDDDSVRLYD---------IVSAKLIKTTY------------HKK----------- 69
L++ASDD +V L+D IV AK I T + H+
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 70 -------------------HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110
H A+ C + +P S + +TG + + ++++D R L
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF------ILATGSADKTVALWDLRNL 308
Query: 111 RY----FKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILRLRGRPTVAF 165
+ F+ HK+ + + SP N++ ++ S D + +WDL
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS------------------ 350
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+ E A + D P F+ GG TA++ D ++ + ++ + + +
Sbjct: 351 -------KIGEEQSA-----EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Query: 226 NI 227
NI
Sbjct: 399 NI 400
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 13/181 (7%)
Query: 113 FKGHKERVISLCM-SPVNDSFMSGSLDHSVRIWDLRVNACQGILR-----LRGRPTVAFD 166
+GH++ L S ++ +S S DH+V +WD+ +G + G V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 167 -----QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 221
+F + + ++D+RS + + LV TAEV + F+ + +L T
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRS-NTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 222 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRN 280
+ + L K + E + + ++P + +++ SG D L+ W+++
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 281 E 281
E
Sbjct: 354 E 354
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 92/242 (38%)
Query: 42 LVTASDDDSVRLYD---------IVSAKLIKTTY------------HKK----------- 69
L++ASDD +V L+D IV AK I T + H+
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 70 -------------------HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110
H A+ C + +P S + +TG + + ++++D R L
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF------ILATGSADKTVALWDLRNL 308
Query: 111 RY----FKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILRLRGRPTVAF 165
+ F+ HK+ + + SP N++ ++ S D + +WDL
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS------------------ 350
Query: 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225
+ E A + D P F+ GG TA++ D ++ + ++ + + +
Sbjct: 351 -------KIGEEQSA-----EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Query: 226 NI 227
NI
Sbjct: 399 NI 400
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 200 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA-----T 254
G T V ++++ DG T + I + + G K F + N T
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 255 FTPDGQYVVSGSGDGTLHAWNINT 278
++PDG + S S D T+ WN+ T
Sbjct: 247 WSPDGTKIASASADKTIKIWNVAT 270
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 41 LLVTASDDDSVRLYDIVSAKL--IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98
+ D V +Y + A + +KT H V F+++ + ++ + D + +
Sbjct: 462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE-ITSVAFSNNGAFLVAT-----DQSRKV 515
Query: 99 LRYLSMYDNRILRY---FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 146
+ Y S+ +N L + + H +V + SP N +GSLD+SV +W++
Sbjct: 516 IPY-SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 51 VRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110
V +YD+ S ++T + C+ + H + S+G + +D RI
Sbjct: 158 VDIYDVESQTKLRTMAGHQARVGCLSWNRH-----------VLSSGSRSGAIHHHDVRIA 206
Query: 111 RY----FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 147
+ +GH V L SG D+ V+IWD R
Sbjct: 207 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 26/182 (14%)
Query: 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL 157
L+ S+ D R GH+ V + + + +S SLD ++R+W+
Sbjct: 159 QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 218
Query: 158 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 217
+ P + L + I + + G + +++ G + V
Sbjct: 219 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV----------- 267
Query: 218 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG---QYVVSGSGDGTLHAW 274
I V + + E+ PS T + + T DG Y+ +G +G L W
Sbjct: 268 ---------ITVHNVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQW 315
Query: 275 NI 276
++
Sbjct: 316 DL 317
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 26/182 (14%)
Query: 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL 157
L+ S+ D R GH+ V + + + +S SLD ++R+W+
Sbjct: 162 QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221
Query: 158 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 217
+ P + L + I + + G + +++ G + V
Sbjct: 222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV----------- 270
Query: 218 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG---QYVVSGSGDGTLHAW 274
I V + + E+ PS T + + T DG Y+ +G +G L W
Sbjct: 271 ---------ITVHNVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQW 318
Query: 275 NI 276
++
Sbjct: 319 DL 320
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 38/215 (17%)
Query: 42 LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL-- 99
L++ASDD ++ L+DI + K FT H ++V+ ++L ESL
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAK-----TIFTGH-TAVVEDVSWHL--LHESLFG 244
Query: 100 -----RYLSMYDNRILRYFK------GHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 147
+ L ++D R K H V L +P ++ + +GS D +V +WDLR
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
Query: 148 VNACQGILRLRGRPTVAFDQQ-----GLVFAVAMEAGAIKLFD----------SRSYDKG 192
N + F Q + A + + ++D + D
Sbjct: 305 -NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGP 363
Query: 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 227
P F+ GG TA++ D ++ + ++ + + +NI
Sbjct: 364 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270
++ D + + N+ +++ + G + L+ T + PD +V+ D
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75
Query: 271 LHAWNINTRNEVACWNGNIGVVA------CLKWAPRRAMFVAAS 308
+ W + R W + ++ C++WAP F S
Sbjct: 76 AYVWTLKGRT----WKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
Length = 211
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 150 ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 209
+C + + GRP + A +AG I D S G + L T + D+
Sbjct: 136 SCMNVSQFAGRPIIT----KFKVAKGSKAGYI---DPISAFAGQLEMLLPRHSTYHIDDM 188
Query: 210 KFSNDGKSMLLTTT 223
+ S+DGK +++T T
Sbjct: 189 RLSSDGKQIIITAT 202
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 243 LEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNI 276
+E PN+ T + +P + Y+++GS G + WN+
Sbjct: 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNL 93
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270
++ D + + N+ +++ + G + L+ T + PD +V+ D
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN 75
Query: 271 LHAWNINTRNEVACWNGNIGVVA------CLKWAPRRAMFVAAS 308
+ W + R W + ++ C++WAP F S
Sbjct: 76 AYVWTLKGRT----WKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 255 FTPDGQYVVSGSGDGTLHAWNINTRNEV 282
F+P +++ + DG + WN+ TR ++
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 255 FTPDGQYVVSGSGDGTLHAWNINTRNEV 282
F+P +++ + DG + WN+ TR ++
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 255 FTPDGQYVVSGSGDGTLHAWNINTRNEV 282
F+P +++ + DG + WN+ TR ++
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 255 FTPDGQYVVSGSGDGTLHAWNINTRNEV 282
F+P +++ + DG + WN+ TR ++
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR 156
E L S+ N+ +Y H + V +L + +SG D SV++WDL A
Sbjct: 121 EILEKESLLVNKFAKY--EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN 178
Query: 157 LRGRP---TVAFDQQGLVFAVAMEAGAIKLFDSR 187
A + +F E G I L+D+R
Sbjct: 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 260 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 319
+Y V+GS D ++ W+++ VA W + V ++++P F+A +L + NP
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLA---ILDNVMKNPG 142
Query: 320 S 320
S
Sbjct: 143 S 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,451,696
Number of Sequences: 62578
Number of extensions: 447489
Number of successful extensions: 1630
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 440
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)