Query 019603
Match_columns 338
No_of_seqs 186 out of 1962
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-49 5.8E-54 325.7 36.8 301 15-319 2-305 (311)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-45 2.5E-50 314.0 23.1 287 19-315 167-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.2E-44 2.6E-49 304.4 25.6 289 21-315 109-479 (480)
4 KOG0286 G-protein beta subunit 100.0 2.4E-41 5.2E-46 275.6 33.2 288 16-314 44-342 (343)
5 KOG0315 G-protein beta subunit 100.0 6.4E-42 1.4E-46 273.2 28.7 270 40-319 11-290 (311)
6 KOG0279 G protein beta subunit 100.0 1.7E-39 3.7E-44 263.2 31.4 287 16-317 4-313 (315)
7 KOG0265 U5 snRNP-specific prot 100.0 4E-40 8.6E-45 269.3 27.3 291 14-314 34-333 (338)
8 KOG0316 Conserved WD40 repeat- 100.0 2.4E-39 5.2E-44 256.6 25.7 284 19-314 9-296 (307)
9 KOG0295 WD40 repeat-containing 100.0 1E-39 2.3E-44 273.0 22.9 291 13-315 94-404 (406)
10 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-40 7.1E-45 280.8 17.7 246 18-275 208-458 (459)
11 KOG0263 Transcription initiati 100.0 1.8E-38 3.8E-43 289.0 22.4 272 23-317 374-649 (707)
12 KOG0293 WD40 repeat-containing 100.0 6.7E-38 1.5E-42 266.0 23.2 289 19-319 216-515 (519)
13 KOG0266 WD40 repeat-containing 100.0 1.3E-36 2.8E-41 281.3 31.9 293 17-317 148-454 (456)
14 KOG0282 mRNA splicing factor [ 100.0 1.1E-37 2.4E-42 269.5 18.5 288 18-315 205-503 (503)
15 KOG0271 Notchless-like WD40 re 100.0 5.6E-37 1.2E-41 258.2 21.7 246 61-317 107-439 (480)
16 KOG0279 G protein beta subunit 100.0 1.7E-35 3.8E-40 240.0 26.9 252 13-277 49-313 (315)
17 cd00200 WD40 WD40 domain, foun 100.0 3.5E-34 7.7E-39 248.2 36.0 284 20-315 2-289 (289)
18 KOG0315 G-protein beta subunit 100.0 1.8E-34 3.9E-39 230.6 28.7 270 20-298 33-309 (311)
19 KOG0285 Pleiotropic regulator 100.0 4.5E-35 9.7E-40 244.9 25.4 287 17-317 141-439 (460)
20 KOG0318 WD40 repeat stress pro 100.0 1E-33 2.2E-38 247.2 34.0 293 19-317 182-560 (603)
21 PLN00181 protein SPA1-RELATED; 100.0 2.3E-33 5E-38 277.3 39.8 284 23-316 479-792 (793)
22 KOG0292 Vesicle coat complex C 100.0 1.4E-34 3.1E-39 265.8 28.2 295 22-322 4-326 (1202)
23 KOG0288 WD40 repeat protein Ti 100.0 4.6E-36 9.9E-41 254.9 17.1 280 22-314 170-458 (459)
24 KOG0284 Polyadenylation factor 100.0 7.7E-36 1.7E-40 253.2 17.7 278 27-317 96-380 (464)
25 KOG0263 Transcription initiati 100.0 5.5E-35 1.2E-39 266.3 23.8 246 10-307 434-703 (707)
26 KOG0275 Conserved WD40 repeat- 100.0 3E-35 6.6E-40 243.3 17.3 283 25-316 211-508 (508)
27 KOG0286 G-protein beta subunit 100.0 1.5E-33 3.3E-38 230.1 27.0 241 24-275 94-343 (343)
28 KOG0645 WD40 repeat protein [G 100.0 4.8E-32 1E-36 219.2 32.6 285 17-316 4-310 (312)
29 KOG0273 Beta-transducin family 100.0 3.9E-33 8.4E-38 240.7 26.7 282 23-317 174-482 (524)
30 KOG0319 WD40-repeat-containing 100.0 1.1E-33 2.3E-38 255.8 24.1 296 19-318 96-536 (775)
31 KOG0306 WD40-repeat-containing 100.0 4.6E-33 1E-37 252.1 27.3 281 21-316 367-663 (888)
32 KOG0291 WD40-repeat-containing 100.0 1.1E-31 2.4E-36 243.3 33.2 280 27-317 265-550 (893)
33 KOG0276 Vesicle coat complex C 100.0 2.3E-32 5E-37 243.1 27.1 276 21-308 7-288 (794)
34 KOG0295 WD40 repeat-containing 100.0 3.7E-33 8E-38 233.9 19.3 251 14-276 137-405 (406)
35 KOG0296 Angio-associated migra 100.0 1.8E-31 3.9E-36 223.9 27.5 289 19-317 98-398 (399)
36 KOG0278 Serine/threonine kinas 100.0 7.7E-33 1.7E-37 221.5 18.1 284 20-319 7-299 (334)
37 KOG0273 Beta-transducin family 100.0 2.6E-31 5.6E-36 229.4 28.5 266 28-308 236-512 (524)
38 KOG0281 Beta-TrCP (transducin 100.0 3E-33 6.5E-38 233.3 15.8 268 26-317 196-477 (499)
39 KOG1036 Mitotic spindle checkp 100.0 4.4E-31 9.5E-36 217.3 26.1 271 27-309 13-294 (323)
40 KOG0319 WD40-repeat-containing 100.0 7.6E-32 1.6E-36 243.9 23.6 289 14-315 310-617 (775)
41 KOG0291 WD40-repeat-containing 100.0 1.3E-30 2.9E-35 236.4 31.6 288 15-315 295-610 (893)
42 KOG0647 mRNA export protein (c 100.0 7.3E-31 1.6E-35 215.3 24.4 274 25-308 25-312 (347)
43 KOG0772 Uncharacterized conser 100.0 4.9E-31 1.1E-35 230.0 24.8 289 18-313 158-483 (641)
44 KOG0281 Beta-TrCP (transducin 100.0 7.9E-33 1.7E-37 230.8 12.4 249 13-281 223-481 (499)
45 KOG0313 Microtubule binding pr 100.0 2E-30 4.3E-35 218.6 26.0 281 25-319 103-420 (423)
46 KOG1407 WD40 repeat protein [F 100.0 2.3E-30 5E-35 208.5 25.0 274 21-308 14-291 (313)
47 KOG0266 WD40 repeat-containing 100.0 1.8E-30 4E-35 240.3 28.0 249 18-277 194-454 (456)
48 KOG0640 mRNA cleavage stimulat 100.0 4.4E-31 9.4E-36 217.4 19.8 269 20-319 105-428 (430)
49 KOG0318 WD40 repeat stress pro 100.0 6E-29 1.3E-33 217.5 33.5 300 16-323 48-356 (603)
50 KOG0283 WD40 repeat-containing 100.0 1.5E-30 3.4E-35 239.1 24.4 294 16-318 255-577 (712)
51 KOG0284 Polyadenylation factor 100.0 8.3E-32 1.8E-36 228.8 13.6 246 22-278 133-381 (464)
52 KOG0265 U5 snRNP-specific prot 100.0 5.6E-30 1.2E-34 210.0 23.4 245 22-274 85-335 (338)
53 KOG0282 mRNA splicing factor [ 100.0 4.2E-31 9.2E-36 228.8 16.5 250 16-275 247-503 (503)
54 KOG2096 WD40 repeat protein [G 100.0 1.5E-29 3.3E-34 209.0 24.9 287 20-314 79-399 (420)
55 KOG0278 Serine/threonine kinas 100.0 4.2E-31 9.1E-36 211.5 14.8 249 20-282 52-302 (334)
56 KOG0292 Vesicle coat complex C 100.0 3.3E-29 7.1E-34 230.7 28.4 248 19-277 43-321 (1202)
57 PTZ00421 coronin; Provisional 100.0 9.5E-29 2.1E-33 228.6 30.9 248 22-317 70-331 (493)
58 KOG0645 WD40 repeat protein [G 100.0 2.7E-28 5.8E-33 197.5 26.1 205 109-315 6-223 (312)
59 KOG0643 Translation initiation 100.0 1.3E-28 2.7E-33 199.1 24.1 282 21-315 4-315 (327)
60 KOG0285 Pleiotropic regulator 100.0 2.6E-29 5.5E-34 210.5 20.7 254 13-278 179-440 (460)
61 cd00200 WD40 WD40 domain, foun 100.0 1.7E-27 3.6E-32 206.3 31.3 245 19-275 43-289 (289)
62 KOG0274 Cdc4 and related F-box 100.0 5.6E-28 1.2E-32 224.0 29.1 275 26-320 207-485 (537)
63 KOG0973 Histone transcription 100.0 2.2E-28 4.7E-33 230.4 24.5 273 10-317 52-355 (942)
64 KOG0313 Microtubule binding pr 100.0 3.8E-28 8.2E-33 204.9 22.9 251 17-277 134-418 (423)
65 KOG0274 Cdc4 and related F-box 100.0 7.3E-28 1.6E-32 223.2 26.3 256 15-289 237-494 (537)
66 KOG0277 Peroxisomal targeting 100.0 3.2E-28 7E-33 195.4 20.6 276 31-316 12-308 (311)
67 KOG0268 Sof1-like rRNA process 100.0 3.1E-29 6.7E-34 210.3 14.0 258 20-282 59-350 (433)
68 KOG0296 Angio-associated migra 100.0 5.9E-27 1.3E-31 196.8 27.6 287 20-317 57-356 (399)
69 KOG0294 WD40 repeat-containing 100.0 4.1E-27 8.9E-32 194.4 25.8 246 17-279 33-283 (362)
70 KOG0643 Translation initiation 100.0 2.1E-27 4.6E-32 192.0 23.3 253 18-277 43-317 (327)
71 KOG0299 U3 snoRNP-associated p 100.0 8.5E-27 1.8E-31 201.1 27.3 297 20-329 135-469 (479)
72 KOG0275 Conserved WD40 repeat- 100.0 1.1E-28 2.4E-33 204.5 14.6 251 12-275 249-507 (508)
73 KOG0301 Phospholipase A2-activ 100.0 7E-27 1.5E-31 210.6 25.5 287 16-325 3-296 (745)
74 PLN00181 protein SPA1-RELATED; 100.0 5.6E-26 1.2E-30 224.9 34.5 243 26-276 531-792 (793)
75 KOG0289 mRNA splicing factor [ 100.0 1.6E-26 3.5E-31 198.1 26.3 276 28-314 220-503 (506)
76 PTZ00420 coronin; Provisional 100.0 2E-25 4.3E-30 207.8 34.7 248 45-302 50-319 (568)
77 KOG0310 Conserved WD40 repeat- 100.0 1.4E-26 3E-31 201.2 24.2 271 28-313 27-303 (487)
78 KOG0277 Peroxisomal targeting 100.0 2.3E-27 5.1E-32 190.5 17.9 252 15-276 49-308 (311)
79 KOG0641 WD40 repeat protein [G 100.0 6.5E-26 1.4E-30 179.5 25.7 245 24-277 86-349 (350)
80 KOG0316 Conserved WD40 repeat- 100.0 2.9E-26 6.3E-31 182.4 21.7 245 63-321 11-261 (307)
81 PTZ00421 coronin; Provisional 100.0 4.2E-25 9.2E-30 204.4 32.3 253 25-318 18-291 (493)
82 KOG1407 WD40 repeat protein [F 100.0 4.3E-26 9.4E-31 183.9 21.5 230 67-309 18-251 (313)
83 KOG0300 WD40 repeat-containing 100.0 8.4E-26 1.8E-30 187.0 23.5 290 16-318 137-477 (481)
84 PTZ00420 coronin; Provisional 99.9 7E-25 1.5E-29 204.1 32.3 234 18-259 65-318 (568)
85 KOG0293 WD40 repeat-containing 99.9 1.8E-26 3.8E-31 196.8 19.5 249 17-278 259-514 (519)
86 KOG0288 WD40 repeat protein Ti 99.9 4.9E-27 1.1E-31 200.1 16.1 250 15-275 207-459 (459)
87 KOG1332 Vesicle coat complex C 99.9 4.1E-26 8.8E-31 182.4 19.5 252 22-319 6-288 (299)
88 KOG0310 Conserved WD40 repeat- 99.9 7.4E-26 1.6E-30 196.7 22.7 245 20-277 61-309 (487)
89 KOG0641 WD40 repeat protein [G 99.9 4.9E-24 1.1E-28 168.9 30.3 303 7-318 13-350 (350)
90 KOG0283 WD40 repeat-containing 99.9 2.5E-26 5.3E-31 211.6 19.8 211 17-279 359-578 (712)
91 KOG0276 Vesicle coat complex C 99.9 5.5E-26 1.2E-30 202.7 21.1 214 97-315 35-255 (794)
92 KOG0308 Conserved WD40 repeat- 99.9 3.2E-26 7E-31 205.0 18.1 280 25-317 19-327 (735)
93 KOG0289 mRNA splicing factor [ 99.9 6.1E-25 1.3E-29 188.5 24.0 250 18-276 252-505 (506)
94 KOG0305 Anaphase promoting com 99.9 2.8E-24 6.2E-29 193.0 28.0 271 32-319 182-463 (484)
95 KOG0264 Nucleosome remodeling 99.9 1.4E-24 2.9E-29 187.4 22.6 251 19-277 116-404 (422)
96 KOG0306 WD40-repeat-containing 99.9 7.5E-24 1.6E-28 192.7 27.9 277 27-315 320-620 (888)
97 KOG1274 WD40 repeat protein [G 99.9 7E-24 1.5E-28 196.8 28.2 268 25-304 11-285 (933)
98 KOG0305 Anaphase promoting com 99.9 4.2E-24 9.2E-29 191.9 25.4 238 27-279 217-463 (484)
99 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-22 5.8E-27 176.5 36.3 268 39-319 1-281 (300)
100 KOG4283 Transcription-coupled 99.9 6.8E-24 1.5E-28 174.0 23.4 286 24-317 40-365 (397)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-22 7.3E-27 175.8 33.7 268 18-299 22-300 (300)
102 KOG1408 WD40 repeat protein [F 99.9 7.3E-24 1.6E-28 191.8 22.1 298 11-317 353-713 (1080)
103 KOG1063 RNA polymerase II elon 99.9 1.1E-23 2.4E-28 190.0 22.6 291 21-319 261-650 (764)
104 KOG0973 Histone transcription 99.9 1.1E-23 2.4E-28 198.8 23.6 256 22-317 7-312 (942)
105 KOG0267 Microtubule severing p 99.9 1.5E-25 3.3E-30 202.8 10.3 236 21-308 22-257 (825)
106 KOG0321 WD40 repeat-containing 99.9 1.6E-23 3.4E-28 187.5 21.6 298 16-319 36-393 (720)
107 KOG0640 mRNA cleavage stimulat 99.9 3.5E-24 7.6E-29 176.9 16.0 250 19-277 164-426 (430)
108 KOG0639 Transducin-like enhanc 99.9 6.2E-24 1.3E-28 185.4 16.4 246 19-276 455-703 (705)
109 KOG2445 Nuclear pore complex c 99.9 2.9E-22 6.4E-27 165.3 25.0 250 23-317 9-318 (361)
110 KOG0646 WD40 repeat protein [G 99.9 3.8E-23 8.2E-28 179.0 20.4 240 27-302 81-332 (476)
111 KOG0269 WD40 repeat-containing 99.9 3E-23 6.5E-28 189.4 20.8 272 27-308 39-329 (839)
112 KOG0650 WD40 repeat nucleolar 99.9 1.3E-22 2.7E-27 180.6 22.2 287 21-314 394-732 (733)
113 KOG2919 Guanine nucleotide-bin 99.9 3.1E-22 6.7E-27 166.3 22.7 284 31-325 53-375 (406)
114 KOG0308 Conserved WD40 repeat- 99.9 2.7E-23 5.8E-28 186.4 17.2 222 94-317 44-283 (735)
115 KOG0264 Nucleosome remodeling 99.9 4.1E-22 8.8E-27 172.2 23.0 223 94-319 144-406 (422)
116 KOG2055 WD40 repeat protein [G 99.9 2.7E-22 5.8E-27 173.5 21.1 245 27-277 213-512 (514)
117 KOG2106 Uncharacterized conser 99.9 1.7E-21 3.7E-26 170.3 26.3 282 25-324 285-588 (626)
118 KOG1334 WD40 repeat protein [G 99.9 2.1E-23 4.6E-28 181.5 14.3 300 12-316 127-465 (559)
119 KOG0294 WD40 repeat-containing 99.9 3.2E-21 6.9E-26 159.7 24.6 214 94-317 60-281 (362)
120 KOG0321 WD40 repeat-containing 99.9 4.2E-22 9E-27 178.5 20.9 288 20-315 93-443 (720)
121 KOG1273 WD40 repeat protein [G 99.9 4.4E-22 9.6E-27 164.8 19.3 236 30-316 26-321 (405)
122 KOG0268 Sof1-like rRNA process 99.9 7.4E-23 1.6E-27 172.2 13.9 243 63-318 60-346 (433)
123 KOG0772 Uncharacterized conser 99.9 2.3E-22 5E-27 176.1 17.5 210 108-317 158-394 (641)
124 KOG0299 U3 snoRNP-associated p 99.9 9.5E-22 2.1E-26 170.1 20.6 240 16-265 190-443 (479)
125 KOG0639 Transducin-like enhanc 99.9 4.3E-22 9.3E-27 174.0 18.1 274 20-310 413-695 (705)
126 KOG1408 WD40 repeat protein [F 99.9 5.8E-22 1.3E-26 179.6 18.3 245 25-278 457-714 (1080)
127 KOG2106 Uncharacterized conser 99.9 2.1E-19 4.6E-24 157.3 33.0 272 27-318 200-522 (626)
128 KOG1539 WD repeat protein [Gen 99.9 1.9E-20 4.2E-25 172.4 26.2 286 22-315 283-646 (910)
129 KOG0300 WD40 repeat-containing 99.9 3.1E-21 6.7E-26 160.0 18.4 261 14-280 177-479 (481)
130 KOG4378 Nuclear protein COP1 [ 99.9 6E-21 1.3E-25 166.6 20.9 260 30-301 37-305 (673)
131 KOG0646 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 161.3 24.6 265 44-317 12-307 (476)
132 KOG4328 WD40 protein [Function 99.9 1.7E-20 3.8E-25 162.3 22.7 298 13-315 172-491 (498)
133 KOG1539 WD repeat protein [Gen 99.9 3.1E-19 6.7E-24 164.6 32.1 303 14-324 189-613 (910)
134 KOG1446 Histone H3 (Lys4) meth 99.9 1.6E-19 3.6E-24 149.8 26.6 236 69-316 14-261 (311)
135 KOG1332 Vesicle coat complex C 99.9 4.1E-21 9E-26 153.9 16.2 212 18-277 47-286 (299)
136 KOG4283 Transcription-coupled 99.9 2.8E-20 6.1E-25 152.9 21.1 245 24-276 98-364 (397)
137 KOG1063 RNA polymerase II elon 99.9 1.5E-19 3.2E-24 163.6 26.5 292 20-317 47-391 (764)
138 KOG1310 WD40 repeat protein [G 99.9 3.8E-20 8.3E-25 163.5 22.2 221 12-236 35-306 (758)
139 KOG0302 Ribosome Assembly prot 99.9 1E-20 2.2E-25 160.1 17.7 240 7-319 131-380 (440)
140 KOG1445 Tumor-specific antigen 99.9 1.3E-20 2.8E-25 169.0 18.4 123 19-147 71-200 (1012)
141 KOG4227 WD40 repeat protein [G 99.9 8E-20 1.7E-24 155.5 22.2 285 23-315 52-385 (609)
142 KOG0267 Microtubule severing p 99.9 5.4E-22 1.2E-26 180.0 9.0 201 14-224 57-259 (825)
143 KOG1034 Transcriptional repres 99.9 5.2E-21 1.1E-25 159.3 13.9 271 25-318 87-382 (385)
144 KOG0301 Phospholipase A2-activ 99.9 6.5E-20 1.4E-24 166.0 21.7 241 14-277 44-288 (745)
145 KOG1274 WD40 repeat protein [G 99.9 1.7E-19 3.7E-24 167.9 24.2 237 22-274 51-297 (933)
146 KOG2096 WD40 repeat protein [G 99.9 1.5E-19 3.2E-24 150.1 20.0 205 110-317 79-308 (420)
147 KOG0269 WD40 repeat-containing 99.9 1.9E-20 4.2E-25 171.2 15.8 243 30-281 90-344 (839)
148 KOG0270 WD40 repeat-containing 99.8 2.2E-19 4.8E-24 155.0 20.6 236 39-282 192-454 (463)
149 COG2319 FOG: WD40 repeat [Gene 99.8 7.2E-17 1.6E-21 147.1 37.8 288 22-319 60-361 (466)
150 KOG0642 Cell-cycle nuclear pro 99.8 6.5E-20 1.4E-24 162.5 15.1 263 14-288 281-572 (577)
151 KOG2048 WD40 repeat protein [G 99.8 3.1E-18 6.7E-23 154.8 26.0 239 28-317 26-273 (691)
152 KOG2048 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 150.2 30.5 294 16-322 57-416 (691)
153 KOG0644 Uncharacterized conser 99.8 1.8E-20 3.8E-25 172.6 11.7 284 2-309 166-458 (1113)
154 KOG0302 Ribosome Assembly prot 99.8 2.3E-19 4.9E-24 152.0 17.0 208 15-270 199-432 (440)
155 KOG4328 WD40 protein [Function 99.8 2.6E-19 5.6E-24 155.1 17.4 255 16-277 223-495 (498)
156 KOG0307 Vesicle coat complex C 99.8 3.9E-20 8.5E-25 175.9 13.0 242 28-314 65-324 (1049)
157 KOG0322 G-protein beta subunit 99.8 2.1E-19 4.6E-24 145.6 15.0 287 18-315 5-321 (323)
158 KOG2055 WD40 repeat protein [G 99.8 1.6E-18 3.6E-23 150.3 20.0 228 70-309 214-455 (514)
159 COG2319 FOG: WD40 repeat [Gene 99.8 6.3E-16 1.4E-20 140.8 37.5 292 19-320 100-403 (466)
160 KOG0647 mRNA export protein (c 99.8 9.8E-18 2.1E-22 138.4 22.1 232 22-265 67-311 (347)
161 KOG0649 WD40 repeat protein [G 99.8 3.3E-17 7.2E-22 131.6 23.4 238 18-307 53-303 (325)
162 KOG0270 WD40 repeat-containing 99.8 2.8E-18 6.2E-23 148.2 18.6 199 115-318 241-450 (463)
163 KOG1273 WD40 repeat protein [G 99.8 7.1E-18 1.5E-22 140.0 20.2 253 17-278 55-323 (405)
164 KOG4378 Nuclear protein COP1 [ 99.8 4.1E-18 8.9E-23 149.1 19.8 263 43-317 6-278 (673)
165 KOG0303 Actin-binding protein 99.8 9.3E-18 2E-22 143.1 20.0 206 22-235 76-296 (472)
166 KOG1538 Uncharacterized conser 99.8 6.9E-18 1.5E-22 152.5 18.4 230 70-314 13-290 (1081)
167 KOG1517 Guanine nucleotide bin 99.8 4.2E-17 9E-22 154.1 24.2 282 29-318 1066-1382(1387)
168 KOG1036 Mitotic spindle checkp 99.8 7.3E-17 1.6E-21 133.7 21.9 231 24-267 51-294 (323)
169 PRK11028 6-phosphogluconolacto 99.8 3.1E-15 6.8E-20 133.8 33.6 269 43-319 6-306 (330)
170 KOG1009 Chromatin assembly com 99.8 6.1E-17 1.3E-21 138.6 19.2 263 18-308 56-361 (434)
171 KOG1188 WD40 repeat protein [G 99.8 2.8E-17 6.1E-22 137.8 15.3 229 97-327 50-356 (376)
172 KOG0307 Vesicle coat complex C 99.8 5.1E-18 1.1E-22 161.7 11.7 215 14-279 103-329 (1049)
173 KOG1538 Uncharacterized conser 99.7 4.7E-17 1E-21 147.1 15.7 248 11-277 37-293 (1081)
174 KOG2445 Nuclear pore complex c 99.7 1.5E-15 3.2E-20 126.0 22.7 205 114-318 10-257 (361)
175 KOG0771 Prolactin regulatory e 99.7 1E-16 2.2E-21 138.0 15.7 197 31-277 148-354 (398)
176 KOG0642 Cell-cycle nuclear pro 99.7 1.5E-16 3.3E-21 141.3 16.3 204 112-317 289-561 (577)
177 KOG1587 Cytoplasmic dynein int 99.7 4.7E-15 1E-19 137.4 26.5 263 49-317 222-516 (555)
178 KOG0650 WD40 repeat nucleolar 99.7 3.5E-16 7.6E-21 139.9 18.2 201 108-312 391-630 (733)
179 PRK01742 tolB translocation pr 99.7 2.1E-15 4.6E-20 139.4 24.1 234 48-300 183-426 (429)
180 KOG1007 WD repeat protein TSSC 99.7 6.6E-16 1.4E-20 127.0 18.0 195 115-315 121-357 (370)
181 KOG1188 WD40 repeat protein [G 99.7 7.4E-16 1.6E-20 129.4 16.5 257 18-276 61-345 (376)
182 PRK11028 6-phosphogluconolacto 99.7 1.8E-13 4E-18 122.4 32.1 250 19-277 27-304 (330)
183 PRK01742 tolB translocation pr 99.7 2E-14 4.3E-19 132.9 23.4 204 97-315 184-399 (429)
184 KOG1034 Transcriptional repres 99.7 7.3E-16 1.6E-20 128.8 12.1 212 13-232 121-382 (385)
185 KOG1524 WD40 repeat-containing 99.7 4E-15 8.7E-20 131.7 17.0 262 25-312 12-279 (737)
186 KOG2919 Guanine nucleotide-bin 99.7 1.3E-14 2.8E-19 121.2 18.7 239 26-277 103-367 (406)
187 KOG2110 Uncharacterized conser 99.7 1.6E-13 3.5E-18 116.6 25.4 237 27-278 5-249 (391)
188 KOG0303 Actin-binding protein 99.7 1.9E-14 4.2E-19 123.1 19.5 199 111-317 75-294 (472)
189 KOG1963 WD40 repeat protein [G 99.7 6.9E-14 1.5E-18 130.5 24.8 277 23-308 12-311 (792)
190 KOG0649 WD40 repeat protein [G 99.6 4.4E-14 9.5E-19 113.8 19.3 213 29-317 12-235 (325)
191 KOG1524 WD40 repeat-containing 99.6 2.6E-14 5.7E-19 126.6 19.2 186 20-230 97-283 (737)
192 KOG1009 Chromatin assembly com 99.6 3.6E-15 7.8E-20 127.9 13.2 157 117-308 13-184 (434)
193 KOG1007 WD repeat protein TSSC 99.6 2.6E-14 5.7E-19 117.7 16.9 215 97-315 40-287 (370)
194 KOG0290 Conserved WD40 repeat- 99.6 2.2E-13 4.7E-18 112.5 22.2 287 16-309 34-356 (364)
195 KOG0771 Prolactin regulatory e 99.6 1.1E-14 2.4E-19 125.5 15.4 192 121-315 148-352 (398)
196 PRK03629 tolB translocation pr 99.6 8.8E-13 1.9E-17 121.8 28.7 237 49-300 179-428 (429)
197 KOG2111 Uncharacterized conser 99.6 4E-12 8.7E-17 106.3 29.3 242 30-278 8-257 (346)
198 KOG1240 Protein kinase contain 99.6 2.4E-13 5.2E-18 130.9 24.2 256 18-282 1039-1339(1431)
199 KOG1963 WD40 repeat protein [G 99.6 4.7E-13 1E-17 125.0 24.9 247 25-318 203-539 (792)
200 KOG1517 Guanine nucleotide bin 99.6 1.6E-13 3.4E-18 130.4 22.0 245 28-280 1110-1384(1387)
201 KOG1445 Tumor-specific antigen 99.6 3.4E-14 7.4E-19 128.2 15.4 202 27-235 627-846 (1012)
202 PRK04922 tolB translocation pr 99.6 1.2E-12 2.6E-17 121.3 25.6 212 97-319 184-411 (433)
203 KOG1523 Actin-related protein 99.6 4E-13 8.7E-18 112.3 19.6 240 23-307 6-267 (361)
204 KOG2110 Uncharacterized conser 99.6 4.6E-12 1E-16 107.9 26.3 188 130-323 57-254 (391)
205 PRK02889 tolB translocation pr 99.6 1.2E-12 2.7E-17 120.9 25.2 202 98-308 177-389 (427)
206 KOG4497 Uncharacterized conser 99.6 6.8E-13 1.5E-17 111.4 20.2 278 32-317 13-391 (447)
207 KOG2321 WD40 repeat protein [G 99.6 6.5E-13 1.4E-17 118.8 20.7 262 13-281 35-347 (703)
208 KOG0290 Conserved WD40 repeat- 99.6 2.1E-13 4.6E-18 112.5 16.2 231 24-267 93-356 (364)
209 PRK05137 tolB translocation pr 99.6 3.4E-12 7.4E-17 118.4 26.1 213 97-320 182-413 (435)
210 PRK04922 tolB translocation pr 99.5 6.6E-12 1.4E-16 116.4 26.8 236 49-299 184-432 (433)
211 KOG2394 WD40 protein DMR-N9 [G 99.5 1.8E-13 3.9E-18 121.4 14.7 165 117-299 219-384 (636)
212 KOG2394 WD40 protein DMR-N9 [G 99.5 3.9E-13 8.4E-18 119.4 16.3 199 12-279 206-454 (636)
213 PRK05137 tolB translocation pr 99.5 2.7E-11 5.9E-16 112.4 28.8 236 49-300 182-433 (435)
214 PRK03629 tolB translocation pr 99.5 9.7E-12 2.1E-16 114.9 25.4 200 98-308 180-392 (429)
215 KOG2139 WD40 repeat protein [G 99.5 4.3E-12 9.4E-17 107.8 19.8 242 28-307 99-363 (445)
216 PRK02889 tolB translocation pr 99.5 2E-11 4.3E-16 112.9 26.2 238 49-300 176-425 (427)
217 PF08662 eIF2A: Eukaryotic tra 99.5 6.5E-12 1.4E-16 103.0 18.8 110 203-319 59-181 (194)
218 KOG0322 G-protein beta subunit 99.5 3.7E-12 8.1E-17 103.9 16.5 248 22-276 50-322 (323)
219 KOG1240 Protein kinase contain 99.5 9E-12 2E-16 120.3 20.3 211 107-317 1038-1273(1431)
220 KOG1587 Cytoplasmic dynein int 99.5 1.2E-11 2.7E-16 114.9 20.6 218 98-317 223-472 (555)
221 KOG1523 Actin-related protein 99.4 8.6E-12 1.9E-16 104.4 17.2 198 116-315 9-234 (361)
222 TIGR02800 propeller_TolB tol-p 99.4 8.9E-11 1.9E-15 108.5 25.9 190 97-297 214-416 (417)
223 PF08662 eIF2A: Eukaryotic tra 99.4 6.2E-11 1.3E-15 97.2 21.0 116 116-239 58-184 (194)
224 TIGR02800 propeller_TolB tol-p 99.4 1.7E-10 3.7E-15 106.7 26.5 201 97-308 170-383 (417)
225 KOG4227 WD40 repeat protein [G 99.4 3.8E-12 8.3E-17 109.1 13.8 197 109-307 48-262 (609)
226 KOG2111 Uncharacterized conser 99.4 2.3E-10 5.1E-15 95.9 23.7 178 139-320 75-259 (346)
227 KOG1409 Uncharacterized conser 99.4 8.7E-12 1.9E-16 105.3 15.0 253 15-278 12-271 (404)
228 KOG1354 Serine/threonine prote 99.4 9.6E-11 2.1E-15 99.2 21.0 247 26-278 24-360 (433)
229 KOG3881 Uncharacterized conser 99.4 7.5E-11 1.6E-15 101.3 20.6 263 26-302 54-344 (412)
230 KOG0644 Uncharacterized conser 99.4 5.3E-13 1.2E-17 124.0 8.1 231 65-317 186-426 (1113)
231 PRK00178 tolB translocation pr 99.4 4E-10 8.7E-15 104.6 26.9 171 120-300 245-428 (430)
232 PRK00178 tolB translocation pr 99.4 4.4E-10 9.6E-15 104.3 27.2 210 98-318 180-405 (430)
233 PF02239 Cytochrom_D1: Cytochr 99.4 2.4E-10 5.2E-15 103.0 24.3 286 17-315 26-345 (369)
234 KOG4547 WD40 repeat-containing 99.4 8.6E-11 1.9E-15 105.8 20.6 186 127-319 3-222 (541)
235 KOG1272 WD40-repeat-containing 99.4 5.6E-12 1.2E-16 110.3 11.8 259 31-308 133-398 (545)
236 KOG1310 WD40 repeat protein [G 99.4 2.7E-11 5.9E-16 108.1 15.4 216 64-285 45-311 (758)
237 PF10282 Lactonase: Lactonase, 99.4 6.6E-08 1.4E-12 87.0 37.5 275 42-319 2-324 (345)
238 PRK04792 tolB translocation pr 99.3 1.1E-09 2.4E-14 101.8 25.9 210 98-318 199-424 (448)
239 KOG0974 WD-repeat protein WDR6 99.3 4.9E-11 1.1E-15 113.6 16.7 192 118-317 88-288 (967)
240 KOG2315 Predicted translation 99.3 1.1E-09 2.4E-14 98.3 23.8 276 29-324 75-397 (566)
241 PRK04792 tolB translocation pr 99.3 3.5E-09 7.6E-14 98.4 27.8 236 50-300 199-447 (448)
242 PF10282 Lactonase: Lactonase, 99.3 2.8E-08 6.1E-13 89.4 32.4 272 17-297 27-345 (345)
243 KOG2139 WD40 repeat protein [G 99.3 2.2E-10 4.8E-15 97.6 17.2 184 119-307 100-298 (445)
244 PF02239 Cytochrom_D1: Cytochr 99.3 8.2E-09 1.8E-13 93.1 28.1 256 41-307 8-286 (369)
245 PRK01029 tolB translocation pr 99.3 4E-09 8.7E-14 97.3 25.9 217 98-319 166-403 (428)
246 KOG4497 Uncharacterized conser 99.3 3.6E-10 7.9E-15 95.2 17.0 269 25-310 89-423 (447)
247 PRK01029 tolB translocation pr 99.3 1.9E-08 4E-13 93.0 29.2 242 50-301 166-426 (428)
248 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.9E-07 4E-12 82.8 33.9 263 49-317 27-330 (352)
249 KOG2314 Translation initiation 99.3 3.7E-09 8.1E-14 94.9 22.7 280 16-309 240-557 (698)
250 KOG0974 WD-repeat protein WDR6 99.2 6.4E-10 1.4E-14 106.2 17.5 199 28-279 88-290 (967)
251 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.4E-07 3E-12 83.7 30.9 239 35-286 53-339 (352)
252 KOG1409 Uncharacterized conser 99.2 1.3E-09 2.8E-14 92.4 16.5 258 12-278 99-395 (404)
253 PLN02919 haloacid dehalogenase 99.2 1.2E-07 2.6E-12 96.3 33.3 242 31-281 571-892 (1057)
254 KOG3881 Uncharacterized conser 99.2 4.6E-09 1E-13 90.4 19.2 198 115-316 103-319 (412)
255 KOG1272 WD40-repeat-containing 99.2 1.2E-10 2.7E-15 102.0 9.2 229 71-315 131-360 (545)
256 KOG4190 Uncharacterized conser 99.2 8.4E-11 1.8E-15 105.3 7.8 220 20-286 728-957 (1034)
257 KOG4532 WD40-like repeat conta 99.1 3.7E-08 8E-13 81.1 21.9 239 31-280 71-334 (344)
258 KOG4547 WD40 repeat-containing 99.1 4E-08 8.8E-13 88.9 23.1 192 36-233 2-220 (541)
259 COG5354 Uncharacterized protei 99.1 1.9E-07 4.2E-12 83.3 26.5 270 28-317 72-395 (561)
260 KOG2041 WD40 repeat protein [G 99.1 6E-09 1.3E-13 96.2 16.6 242 27-308 14-277 (1189)
261 KOG2321 WD40 repeat protein [G 99.1 1.3E-08 2.7E-13 91.9 18.2 198 115-318 49-303 (703)
262 COG2706 3-carboxymuconate cycl 99.0 7.5E-07 1.6E-11 76.6 26.3 226 96-321 15-278 (346)
263 PRK04043 tolB translocation pr 99.0 5.5E-07 1.2E-11 82.8 27.0 190 119-320 189-401 (419)
264 PF00400 WD40: WD domain, G-be 99.0 1.2E-09 2.7E-14 64.6 6.4 38 108-145 2-39 (39)
265 KOG1064 RAVE (regulator of V-A 99.0 2E-09 4.3E-14 108.0 11.2 186 114-317 2205-2398(2439)
266 PF00400 WD40: WD domain, G-be 99.0 1.1E-09 2.3E-14 64.9 5.8 38 18-55 2-39 (39)
267 COG2706 3-carboxymuconate cycl 99.0 1.1E-05 2.4E-10 69.6 31.8 266 25-298 37-345 (346)
268 KOG1334 WD40 repeat protein [G 99.0 3.9E-09 8.5E-14 93.3 10.9 248 23-278 181-467 (559)
269 KOG3914 WD repeat protein WDR4 99.0 1.1E-08 2.4E-13 88.5 13.0 160 122-285 67-231 (390)
270 TIGR03300 assembly_YfgL outer 99.0 2.3E-06 5E-11 78.1 29.0 254 39-314 105-376 (377)
271 KOG4532 WD40-like repeat conta 99.0 1.4E-07 3E-12 77.8 18.4 194 98-302 53-263 (344)
272 KOG0882 Cyclophilin-related pe 99.0 7.3E-09 1.6E-13 90.8 11.4 243 25-315 7-303 (558)
273 KOG0280 Uncharacterized conser 99.0 9E-08 1.9E-12 79.8 17.0 239 30-278 72-334 (339)
274 KOG0309 Conserved WD40 repeat- 98.9 1.4E-08 3.1E-13 94.1 13.1 280 26-317 23-339 (1081)
275 PLN02919 haloacid dehalogenase 98.9 3.6E-06 7.8E-11 85.8 31.5 218 94-317 587-888 (1057)
276 KOG1354 Serine/threonine prote 98.9 3.9E-07 8.4E-12 77.7 19.9 207 118-327 85-367 (433)
277 KOG4190 Uncharacterized conser 98.9 3.2E-09 6.9E-14 95.4 7.4 193 110-307 728-935 (1034)
278 KOG2314 Translation initiation 98.9 8.1E-07 1.8E-11 80.2 21.8 276 31-318 214-526 (698)
279 COG4946 Uncharacterized protei 98.9 3.4E-06 7.4E-11 75.0 24.5 157 99-264 343-505 (668)
280 KOG1064 RAVE (regulator of V-A 98.9 1.6E-08 3.5E-13 101.7 11.1 152 118-287 2252-2408(2439)
281 PF08450 SGL: SMP-30/Gluconola 98.8 5.5E-05 1.2E-09 64.7 30.6 220 31-264 3-242 (246)
282 KOG2695 WD40 repeat protein [G 98.8 5.3E-08 1.1E-12 82.9 10.1 167 133-299 228-402 (425)
283 KOG2041 WD40 repeat protein [G 98.8 8.8E-07 1.9E-11 82.3 18.4 248 13-277 57-337 (1189)
284 KOG2315 Predicted translation 98.8 4.6E-06 9.9E-11 75.5 22.1 204 26-238 164-394 (566)
285 COG4946 Uncharacterized protei 98.7 0.00013 2.9E-09 65.2 30.1 179 128-317 277-477 (668)
286 COG5354 Uncharacterized protei 98.7 1.3E-05 2.9E-10 71.9 23.5 279 22-316 27-347 (561)
287 PRK04043 tolB translocation pr 98.7 2.7E-05 5.9E-10 71.7 26.4 195 28-234 188-401 (419)
288 PF13360 PQQ_2: PQQ-like domai 98.7 2.2E-05 4.8E-10 66.6 24.2 219 47-282 1-235 (238)
289 TIGR03300 assembly_YfgL outer 98.7 7.1E-05 1.5E-09 68.3 27.7 228 38-285 64-305 (377)
290 KOG3914 WD repeat protein WDR4 98.6 8E-07 1.7E-11 77.2 13.5 163 165-332 70-237 (390)
291 KOG1275 PAB-dependent poly(A) 98.6 1.6E-06 3.5E-11 82.6 16.5 184 38-231 146-340 (1118)
292 KOG1832 HIV-1 Vpr-binding prot 98.6 3.1E-08 6.6E-13 93.7 4.4 228 12-306 1086-1318(1516)
293 COG5170 CDC55 Serine/threonine 98.6 9.3E-07 2E-11 74.5 12.2 251 25-319 24-311 (460)
294 KOG0280 Uncharacterized conser 98.6 2.2E-05 4.7E-10 65.9 18.8 202 97-302 46-266 (339)
295 PF04762 IKI3: IKI3 family; I 98.5 0.00013 2.7E-09 73.5 27.6 251 26-302 74-361 (928)
296 KOG0309 Conserved WD40 repeat- 98.5 5.4E-07 1.2E-11 83.9 9.9 122 21-148 108-233 (1081)
297 COG5170 CDC55 Serine/threonine 98.5 1.6E-06 3.6E-11 73.1 11.6 161 114-277 169-367 (460)
298 KOG1912 WD40 repeat protein [G 98.5 0.00012 2.6E-09 69.1 24.4 210 14-232 42-303 (1062)
299 PF13360 PQQ_2: PQQ-like domai 98.5 0.00011 2.4E-09 62.2 22.9 211 97-315 3-228 (238)
300 PF08450 SGL: SMP-30/Gluconola 98.5 0.00057 1.2E-08 58.4 30.2 200 96-307 21-243 (246)
301 PF04762 IKI3: IKI3 family; I 98.5 0.0014 3E-08 66.2 33.4 285 26-317 208-562 (928)
302 KOG1912 WD40 repeat protein [G 98.5 2.9E-05 6.3E-10 73.2 19.5 250 27-278 15-305 (1062)
303 PF07433 DUF1513: Protein of u 98.4 0.00074 1.6E-08 58.3 25.8 215 99-321 30-287 (305)
304 PF15492 Nbas_N: Neuroblastoma 98.4 0.00014 3.1E-09 61.1 20.5 199 121-330 47-272 (282)
305 KOG4714 Nucleoporin [Nuclear s 98.4 1E-05 2.2E-10 66.7 12.6 165 22-187 84-254 (319)
306 KOG0882 Cyclophilin-related pe 98.3 8.9E-06 1.9E-10 71.9 12.2 230 21-285 47-313 (558)
307 PRK11138 outer membrane biogen 98.3 0.0026 5.7E-08 58.4 29.5 231 39-288 120-364 (394)
308 KOG1275 PAB-dependent poly(A) 98.3 2.7E-05 5.8E-10 74.6 15.0 171 99-276 159-341 (1118)
309 PF15492 Nbas_N: Neuroblastoma 98.3 0.00032 6.9E-09 59.0 19.2 199 31-244 47-270 (282)
310 KOG2066 Vacuolar assembly/sort 98.2 0.00012 2.5E-09 69.5 17.6 183 117-317 39-233 (846)
311 PF07433 DUF1513: Protein of u 98.2 0.0028 6.2E-08 54.8 24.4 226 32-267 9-276 (305)
312 PF11768 DUF3312: Protein of u 98.2 0.0003 6.5E-09 64.8 18.8 73 115-188 257-330 (545)
313 KOG2114 Vacuolar assembly/sort 98.2 0.00066 1.4E-08 65.0 21.4 189 100-291 46-258 (933)
314 KOG1832 HIV-1 Vpr-binding prot 98.2 2E-06 4.3E-11 81.8 4.8 188 109-309 1093-1286(1516)
315 KOG2114 Vacuolar assembly/sort 98.1 0.00075 1.6E-08 64.7 19.7 191 124-317 30-243 (933)
316 KOG1645 RING-finger-containing 98.1 0.0002 4.3E-09 62.8 14.7 91 99-189 175-268 (463)
317 PF11768 DUF3312: Protein of u 98.0 0.00035 7.6E-09 64.4 16.5 71 245-317 257-329 (545)
318 smart00320 WD40 WD40 repeats. 98.0 1.1E-05 2.3E-10 46.3 4.6 38 18-55 3-40 (40)
319 smart00320 WD40 WD40 repeats. 98.0 1.8E-05 3.9E-10 45.2 5.6 38 108-145 3-40 (40)
320 KOG1920 IkappaB kinase complex 98.0 0.0022 4.9E-08 63.8 21.6 231 27-278 68-323 (1265)
321 KOG4714 Nucleoporin [Nuclear s 98.0 2.7E-05 5.9E-10 64.3 7.0 106 38-148 143-255 (319)
322 PRK11138 outer membrane biogen 98.0 0.0058 1.3E-07 56.1 23.4 222 39-276 160-393 (394)
323 KOG2695 WD40 repeat protein [G 97.9 9E-05 1.9E-09 63.7 9.7 144 98-244 235-387 (425)
324 KOG3617 WD40 and TPR repeat-co 97.9 0.0011 2.4E-08 63.5 17.2 272 27-308 15-374 (1416)
325 PRK02888 nitrous-oxide reducta 97.9 0.002 4.3E-08 61.0 18.5 221 98-326 216-470 (635)
326 cd00216 PQQ_DH Dehydrogenases 97.9 0.026 5.6E-07 53.4 28.3 254 40-304 111-452 (488)
327 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.02 4.3E-07 51.8 24.4 259 36-308 1-346 (353)
328 PF08596 Lgl_C: Lethal giant l 97.8 0.0097 2.1E-07 54.3 21.6 262 29-308 3-325 (395)
329 KOG1645 RING-finger-containing 97.8 0.0014 2.9E-08 57.7 15.1 103 17-125 183-289 (463)
330 PF08553 VID27: VID27 cytoplas 97.8 0.0086 1.9E-07 58.7 21.5 207 96-309 503-762 (794)
331 KOG1920 IkappaB kinase complex 97.8 0.005 1.1E-07 61.4 19.9 195 118-315 69-320 (1265)
332 COG0823 TolB Periplasmic compo 97.7 0.004 8.8E-08 57.3 18.1 193 107-308 182-388 (425)
333 COG0823 TolB Periplasmic compo 97.7 0.0087 1.9E-07 55.2 19.2 161 97-266 218-388 (425)
334 KOG3621 WD40 repeat-containing 97.6 0.00014 3.1E-09 68.0 7.3 102 210-312 40-147 (726)
335 KOG3621 WD40 repeat-containing 97.6 0.02 4.4E-07 54.1 21.0 118 26-148 32-155 (726)
336 KOG2066 Vacuolar assembly/sort 97.6 0.01 2.2E-07 56.8 18.8 145 126-278 80-234 (846)
337 PF06977 SdiA-regulated: SdiA- 97.6 0.038 8.2E-07 47.0 23.3 195 111-307 15-239 (248)
338 PF04841 Vps16_N: Vps16, N-ter 97.4 0.095 2.1E-06 48.4 25.2 204 99-314 63-284 (410)
339 PF04053 Coatomer_WDAD: Coatom 97.4 0.077 1.7E-06 49.3 21.5 226 25-277 30-262 (443)
340 KOG4640 Anaphase-promoting com 97.4 0.0015 3.4E-08 60.6 9.8 93 204-299 21-115 (665)
341 PRK02888 nitrous-oxide reducta 97.3 0.0092 2E-07 56.6 14.5 92 96-188 295-405 (635)
342 KOG2395 Protein involved in va 97.3 0.016 3.5E-07 53.1 15.2 129 97-232 356-499 (644)
343 PF06433 Me-amine-dh_H: Methyl 97.3 0.12 2.6E-06 45.6 25.7 245 33-287 41-330 (342)
344 PF04053 Coatomer_WDAD: Coatom 97.2 0.025 5.5E-07 52.4 16.7 177 116-313 31-219 (443)
345 PF14583 Pectate_lyase22: Olig 97.2 0.17 3.6E-06 45.5 26.5 261 34-308 42-369 (386)
346 KOG4649 PQQ (pyrrolo-quinoline 97.2 0.094 2E-06 44.1 17.2 132 143-287 2-133 (354)
347 KOG1008 Uncharacterized conser 97.1 0.00037 8E-09 64.7 3.4 187 118-308 57-263 (783)
348 KOG2079 Vacuolar assembly/sort 97.1 0.003 6.5E-08 62.2 9.5 101 215-316 99-202 (1206)
349 PF03178 CPSF_A: CPSF A subuni 97.1 0.18 4E-06 44.9 23.7 133 97-233 62-202 (321)
350 PRK13616 lipoprotein LpqB; Pro 97.1 0.16 3.4E-06 49.1 20.7 185 116-306 348-556 (591)
351 KOG3617 WD40 and TPR repeat-co 97.1 0.0013 2.8E-08 63.1 6.5 105 209-317 21-131 (1416)
352 PF08553 VID27: VID27 cytoplas 97.0 0.022 4.7E-07 56.0 14.4 140 133-276 498-646 (794)
353 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.2 4.3E-06 42.2 24.9 139 39-186 23-164 (354)
354 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.3 6.6E-06 44.1 21.0 220 97-319 23-315 (353)
355 PF00780 CNH: CNH domain; Int 96.9 0.24 5.3E-06 42.8 25.6 232 37-288 5-266 (275)
356 COG3391 Uncharacterized conser 96.9 0.35 7.6E-06 44.2 25.2 201 31-239 77-289 (381)
357 COG3204 Uncharacterized protei 96.8 0.061 1.3E-06 46.0 13.8 131 201-332 83-227 (316)
358 COG3391 Uncharacterized conser 96.8 0.38 8.3E-06 44.0 29.6 202 96-301 95-310 (381)
359 KOG2444 WD40 repeat protein [G 96.8 0.003 6.5E-08 51.7 5.4 190 131-333 32-227 (238)
360 cd00216 PQQ_DH Dehydrogenases 96.8 0.53 1.1E-05 44.6 25.2 193 39-242 61-328 (488)
361 PHA02713 hypothetical protein; 96.7 0.24 5.3E-06 47.7 19.1 147 128-280 351-536 (557)
362 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.18 3.8E-06 36.8 13.7 65 120-186 2-70 (111)
363 PF06977 SdiA-regulated: SdiA- 96.6 0.41 8.8E-06 40.8 25.4 203 21-274 15-247 (248)
364 PF02897 Peptidase_S9_N: Proly 96.6 0.63 1.4E-05 43.0 28.6 249 30-282 126-409 (414)
365 PF03178 CPSF_A: CPSF A subuni 96.5 0.54 1.2E-05 41.8 19.9 133 139-277 62-202 (321)
366 PF12894 Apc4_WD40: Anaphase-p 96.4 0.013 2.8E-07 35.7 5.1 34 247-281 11-44 (47)
367 KOG4441 Proteins containing BT 96.2 1.3 2.8E-05 42.9 20.6 232 37-277 283-546 (571)
368 COG3386 Gluconolactonase [Carb 96.2 0.8 1.7E-05 40.4 22.5 103 205-308 164-274 (307)
369 PF12894 Apc4_WD40: Anaphase-p 96.2 0.02 4.3E-07 34.8 5.2 30 27-56 11-40 (47)
370 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.36 7.8E-06 35.2 13.5 94 166-272 11-109 (111)
371 KOG1008 Uncharacterized conser 96.0 0.0031 6.8E-08 58.8 1.7 203 28-233 57-275 (783)
372 PF14583 Pectate_lyase22: Olig 96.0 1.2 2.5E-05 40.3 23.5 241 55-306 16-299 (386)
373 TIGR03074 PQQ_membr_DH membran 95.9 2.1 4.6E-05 42.7 22.9 62 224-285 413-485 (764)
374 PF02897 Peptidase_S9_N: Proly 95.9 1.5 3.2E-05 40.6 22.6 183 119-307 125-342 (414)
375 PRK13616 lipoprotein LpqB; Pro 95.8 0.19 4.1E-06 48.6 12.7 97 204-308 350-466 (591)
376 PHA02713 hypothetical protein; 95.7 1.3 2.7E-05 42.9 18.0 173 128-308 303-520 (557)
377 KOG4640 Anaphase-promoting com 95.7 0.066 1.4E-06 50.2 8.7 73 163-240 26-99 (665)
378 KOG2444 WD40 repeat protein [G 95.6 0.049 1.1E-06 44.8 6.7 103 215-317 70-177 (238)
379 PF08596 Lgl_C: Lethal giant l 95.6 0.39 8.4E-06 44.0 13.3 152 119-277 3-173 (395)
380 TIGR02604 Piru_Ver_Nterm putat 95.5 1.9 4.1E-05 39.3 17.8 59 249-308 125-202 (367)
381 PF04841 Vps16_N: Vps16, N-ter 95.4 2.3 4.9E-05 39.4 30.1 222 33-275 34-285 (410)
382 PF10647 Gmad1: Lipoprotein Lp 95.3 1.6 3.5E-05 37.4 18.3 150 119-270 25-188 (253)
383 KOG2395 Protein involved in va 95.3 0.33 7.2E-06 44.9 11.7 140 131-276 348-499 (644)
384 PF05096 Glu_cyclase_2: Glutam 95.3 1.6 3.5E-05 37.3 21.1 182 117-307 44-249 (264)
385 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.6 4.4 9.6E-05 38.8 30.8 261 40-304 121-518 (527)
386 PHA03098 kelch-like protein; P 94.4 5 0.00011 38.5 18.0 194 38-238 294-516 (534)
387 KOG2079 Vacuolar assembly/sort 94.3 0.19 4.1E-06 50.2 8.0 104 169-277 99-203 (1206)
388 PF14870 PSII_BNR: Photosynthe 94.2 3.1 6.7E-05 36.6 14.5 155 115-274 142-301 (302)
389 KOG4441 Proteins containing BT 94.1 2.8 6E-05 40.6 15.4 201 97-308 301-530 (571)
390 PF05096 Glu_cyclase_2: Glutam 94.0 3.5 7.6E-05 35.3 20.7 49 16-65 32-84 (264)
391 PF12234 Rav1p_C: RAVE protein 94.0 3.7 8.1E-05 39.8 15.8 103 212-315 38-154 (631)
392 PF05694 SBP56: 56kDa selenium 93.8 5.3 0.00012 36.7 16.3 117 31-149 184-344 (461)
393 PF10647 Gmad1: Lipoprotein Lp 93.7 4 8.7E-05 35.0 16.0 143 161-308 27-184 (253)
394 COG3204 Uncharacterized protei 93.7 4.2 9.2E-05 35.2 20.2 192 113-305 81-299 (316)
395 COG3490 Uncharacterized protei 93.5 1.9 4.2E-05 37.0 11.5 62 253-314 119-186 (366)
396 PHA03098 kelch-like protein; P 93.5 5.7 0.00012 38.1 16.6 173 98-278 312-512 (534)
397 KOG1916 Nuclear protein, conta 93.4 0.1 2.2E-06 51.1 4.4 130 19-185 124-263 (1283)
398 PF14870 PSII_BNR: Photosynthe 93.3 5.3 0.00011 35.2 16.8 106 199-309 140-252 (302)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 93.3 1.3 2.9E-05 40.6 11.2 87 201-287 305-408 (415)
400 PF00780 CNH: CNH domain; Int 92.7 6 0.00013 34.1 19.8 153 128-285 6-173 (275)
401 TIGR02604 Piru_Ver_Nterm putat 92.1 9 0.0002 34.8 17.4 145 119-268 15-204 (367)
402 KOG1897 Damage-specific DNA bi 92.0 15 0.00033 37.1 25.2 101 205-308 776-887 (1096)
403 PF06433 Me-amine-dh_H: Methyl 91.9 8.8 0.00019 34.2 27.7 264 49-317 17-320 (342)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.6 13 0.00028 35.7 29.7 109 39-154 69-196 (527)
405 PF14781 BBS2_N: Ciliary BBSom 91.4 5 0.00011 30.4 11.0 71 205-278 49-126 (136)
406 PF07569 Hira: TUP1-like enhan 91.4 1.2 2.6E-05 37.2 7.9 56 253-308 16-85 (219)
407 PF11715 Nup160: Nucleoporin N 91.2 1.2 2.7E-05 42.8 8.9 73 213-285 156-256 (547)
408 PF14727 PHTB1_N: PTHB1 N-term 91.1 13 0.00027 34.5 16.0 144 130-276 38-203 (418)
409 KOG3630 Nuclear pore complex, 90.7 3.8 8.3E-05 41.8 11.5 142 164-308 107-262 (1405)
410 KOG3630 Nuclear pore complex, 90.6 2.5 5.3E-05 43.1 10.1 116 206-322 103-231 (1405)
411 COG3823 Glutamine cyclotransfe 90.5 8.8 0.00019 31.6 13.6 173 128-308 55-248 (262)
412 PF10313 DUF2415: Uncharacteri 90.4 1.3 2.8E-05 26.2 5.1 31 118-148 1-34 (43)
413 PF07569 Hira: TUP1-like enhan 89.8 2.6 5.7E-05 35.2 8.6 66 211-277 18-95 (219)
414 COG4590 ABC-type uncharacteriz 89.8 6.3 0.00014 36.3 11.2 172 110-286 213-395 (733)
415 PF10168 Nup88: Nuclear pore c 89.8 12 0.00026 37.3 14.2 76 203-279 84-181 (717)
416 PHA02790 Kelch-like protein; P 89.4 20 0.00043 34.0 16.8 142 38-188 271-424 (480)
417 PF14727 PHTB1_N: PTHB1 N-term 89.2 18 0.0004 33.4 16.5 148 169-317 37-204 (418)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 88.7 8.4 0.00018 35.5 11.5 46 112-157 302-347 (415)
419 PF10313 DUF2415: Uncharacteri 88.4 2.7 5.7E-05 24.9 5.4 31 28-58 1-34 (43)
420 TIGR02276 beta_rpt_yvtn 40-res 88.3 3.3 7.1E-05 23.8 6.1 31 257-287 1-32 (42)
421 PF12234 Rav1p_C: RAVE protein 88.2 27 0.00059 34.1 15.5 107 124-232 36-155 (631)
422 PRK10115 protease 2; Provision 87.8 31 0.00068 34.4 33.1 117 28-146 127-254 (686)
423 COG3823 Glutamine cyclotransfe 87.0 16 0.00034 30.2 14.6 167 97-265 68-247 (262)
424 PF11715 Nup160: Nucleoporin N 86.8 1.5 3.3E-05 42.2 6.1 38 28-65 215-256 (547)
425 PF07995 GSDH: Glucose / Sorbo 86.6 13 0.00028 33.3 11.5 101 206-308 4-132 (331)
426 PF07995 GSDH: Glucose / Sorbo 86.6 23 0.0005 31.6 22.0 57 258-314 270-330 (331)
427 KOG1916 Nuclear protein, conta 86.0 0.54 1.2E-05 46.4 2.4 102 211-315 191-321 (1283)
428 PF13449 Phytase-like: Esteras 85.5 26 0.00057 31.2 16.6 110 208-318 89-250 (326)
429 PF05694 SBP56: 56kDa selenium 85.2 32 0.00068 31.9 24.2 67 248-314 312-398 (461)
430 PHA02790 Kelch-like protein; P 84.9 36 0.00078 32.3 17.9 160 98-268 288-456 (480)
431 PF15390 DUF4613: Domain of un 84.8 16 0.00035 34.9 11.1 115 115-232 54-185 (671)
432 COG3490 Uncharacterized protei 84.8 25 0.00055 30.5 14.9 157 124-284 120-317 (366)
433 PLN00033 photosystem II stabil 84.7 33 0.00071 31.6 17.5 147 123-274 244-396 (398)
434 KOG4659 Uncharacterized conser 83.9 63 0.0014 34.3 19.6 48 287-334 659-711 (1899)
435 TIGR03118 PEPCTERM_chp_1 conse 83.9 29 0.00063 30.4 25.5 167 131-299 102-307 (336)
436 PF10168 Nup88: Nuclear pore c 83.7 51 0.0011 33.0 22.0 103 17-149 74-181 (717)
437 KOG2377 Uncharacterized conser 83.3 30 0.00065 32.1 11.8 104 203-308 66-172 (657)
438 PRK10115 protease 2; Provision 83.1 53 0.0011 32.8 21.6 194 119-318 128-345 (686)
439 COG5167 VID27 Protein involved 82.9 43 0.00093 31.6 12.9 57 258-314 572-629 (776)
440 PF14761 HPS3_N: Hermansky-Pud 82.8 26 0.00056 29.0 11.4 98 216-316 29-162 (215)
441 COG3386 Gluconolactonase [Carb 82.0 36 0.00078 30.1 24.2 219 32-264 29-272 (307)
442 KOG4499 Ca2+-binding protein R 81.8 30 0.00066 29.1 12.6 46 211-258 219-264 (310)
443 TIGR03606 non_repeat_PQQ dehyd 81.2 48 0.0011 31.1 18.3 34 116-149 28-61 (454)
444 TIGR02276 beta_rpt_yvtn 40-res 80.5 8.5 0.00019 22.0 6.1 31 37-67 1-32 (42)
445 KOG2377 Uncharacterized conser 80.3 21 0.00046 33.0 9.8 75 248-322 67-145 (657)
446 KOG4460 Nuclear pore complex, 80.3 41 0.00089 31.8 11.8 22 163-184 109-130 (741)
447 KOG2280 Vacuolar assembly/sort 80.0 66 0.0014 31.9 18.5 69 248-317 217-287 (829)
448 COG4257 Vgb Streptogramin lyas 79.3 41 0.00089 29.1 23.1 229 31-278 65-306 (353)
449 COG5167 VID27 Protein involved 79.3 36 0.00078 32.1 11.0 129 97-232 490-631 (776)
450 PF07676 PD40: WD40-like Beta 79.1 9.3 0.0002 21.6 5.4 32 23-54 4-38 (39)
451 KOG2247 WD40 repeat-containing 78.7 0.37 8E-06 44.3 -1.5 135 163-305 40-175 (615)
452 PF08728 CRT10: CRT10; InterP 77.5 32 0.00069 34.1 10.9 73 204-276 164-245 (717)
453 PF03088 Str_synth: Strictosid 77.5 22 0.00047 24.9 8.6 52 264-316 32-87 (89)
454 PF03022 MRJP: Major royal jel 76.0 54 0.0012 28.7 18.6 190 119-308 2-254 (287)
455 KOG1983 Tomosyn and related SN 75.8 88 0.0019 32.7 14.1 29 29-57 37-65 (993)
456 PF12657 TFIIIC_delta: Transcr 75.1 22 0.00049 28.3 8.0 30 118-147 86-121 (173)
457 KOG1900 Nuclear pore complex, 74.5 1E+02 0.0022 32.7 13.7 80 198-278 173-273 (1311)
458 PF07676 PD40: WD40-like Beta 74.5 13 0.00029 21.0 5.5 29 116-144 7-38 (39)
459 PF07250 Glyoxal_oxid_N: Glyox 73.3 57 0.0012 27.7 12.2 141 99-241 48-205 (243)
460 KOG1520 Predicted alkaloid syn 72.1 77 0.0017 28.7 14.2 52 265-317 195-250 (376)
461 PF15390 DUF4613: Domain of un 72.0 98 0.0021 29.9 14.0 111 204-315 57-184 (671)
462 smart00564 PQQ beta-propeller 71.7 12 0.00025 20.1 4.1 24 260-283 7-30 (33)
463 PF14761 HPS3_N: Hermansky-Pud 70.1 21 0.00046 29.5 6.7 47 260-307 29-77 (215)
464 TIGR03548 mutarot_permut cycli 70.0 79 0.0017 28.0 12.9 56 214-269 171-234 (323)
465 PF13449 Phytase-like: Esteras 69.8 82 0.0018 28.1 12.7 103 204-307 20-164 (326)
466 KOG4460 Nuclear pore complex, 69.4 64 0.0014 30.6 10.1 29 27-55 103-131 (741)
467 TIGR03606 non_repeat_PQQ dehyd 68.7 1.1E+02 0.0023 28.9 15.7 102 205-308 31-164 (454)
468 PF12657 TFIIIC_delta: Transcr 68.6 32 0.0007 27.4 7.6 30 249-278 87-122 (173)
469 COG4257 Vgb Streptogramin lyas 67.7 83 0.0018 27.3 19.0 189 97-302 83-288 (353)
470 PF08728 CRT10: CRT10; InterP 67.6 1.4E+02 0.003 29.9 15.3 102 206-308 103-235 (717)
471 KOG2280 Vacuolar assembly/sort 67.4 1.4E+02 0.003 29.8 16.3 191 118-317 44-244 (829)
472 KOG2247 WD40 repeat-containing 65.9 0.97 2.1E-05 41.7 -1.9 141 122-269 39-180 (615)
473 COG5290 IkappaB kinase complex 64.3 1.1E+02 0.0025 30.7 11.1 101 208-310 251-359 (1243)
474 PF08801 Nucleoporin_N: Nup133 63.0 1.3E+02 0.0028 27.9 16.2 29 250-278 192-220 (422)
475 KOG3616 Selective LIM binding 62.6 18 0.00039 35.6 5.6 69 248-317 15-83 (1636)
476 PF13570 PQQ_3: PQQ-like domai 61.8 15 0.00033 20.9 3.3 21 258-278 20-40 (40)
477 PRK13684 Ycf48-like protein; P 61.4 1.2E+02 0.0026 27.1 15.9 150 117-275 172-329 (334)
478 KOG3616 Selective LIM binding 60.2 23 0.00051 34.9 5.9 33 117-149 14-46 (1636)
479 PLN02153 epithiospecifier prot 59.8 1.3E+02 0.0028 26.9 23.4 25 38-62 32-63 (341)
480 KOG2103 Uncharacterized conser 59.4 92 0.002 31.2 9.6 80 204-290 36-116 (910)
481 PF10214 Rrn6: RNA polymerase 59.0 2.1E+02 0.0046 29.1 13.5 107 205-312 147-271 (765)
482 PF01436 NHL: NHL repeat; Int 58.1 26 0.00056 18.3 3.7 24 31-54 5-28 (28)
483 KOG1897 Damage-specific DNA bi 55.7 2.6E+02 0.0056 29.0 29.2 90 227-317 752-856 (1096)
484 PF05935 Arylsulfotrans: Aryls 55.3 1.9E+02 0.0041 27.4 12.8 72 209-285 153-239 (477)
485 PRK13684 Ycf48-like protein; P 53.7 1.7E+02 0.0036 26.2 16.4 103 203-308 172-278 (334)
486 PF10214 Rrn6: RNA polymerase 52.4 2.7E+02 0.0059 28.3 13.3 113 163-278 151-277 (765)
487 PF05935 Arylsulfotrans: Aryls 49.0 2.4E+02 0.0052 26.7 16.5 121 163-289 153-313 (477)
488 PF10636 hemP: Hemin uptake pr 48.2 22 0.00048 20.4 2.3 23 22-44 15-37 (38)
489 PF01731 Arylesterase: Arylest 47.0 43 0.00092 23.3 4.1 28 30-57 56-84 (86)
490 PF07250 Glyoxal_oxid_N: Glyox 45.8 1.9E+02 0.0041 24.6 13.2 143 142-288 49-208 (243)
491 TIGR02171 Fb_sc_TIGR02171 Fibr 45.0 1.7E+02 0.0038 30.0 9.3 83 218-302 321-411 (912)
492 TIGR02608 delta_60_rpt delta-6 44.4 71 0.0015 20.1 4.4 19 29-47 2-20 (55)
493 TIGR03118 PEPCTERM_chp_1 conse 43.8 1.9E+02 0.0041 25.6 8.3 109 207-315 26-168 (336)
494 PRK10183 hypothetical protein; 40.7 69 0.0015 20.1 3.8 24 21-44 32-55 (56)
495 PF12768 Rax2: Cortical protei 39.9 2.6E+02 0.0056 24.4 10.9 117 178-298 15-145 (281)
496 KOG4499 Ca2+-binding protein R 39.3 2.4E+02 0.0053 24.0 16.3 94 207-300 161-264 (310)
497 PF15525 DUF4652: Domain of un 38.7 2.2E+02 0.0047 23.2 9.3 69 49-117 88-160 (200)
498 PF12768 Rax2: Cortical protei 38.1 2.7E+02 0.0059 24.3 10.5 37 25-61 34-76 (281)
499 PF01011 PQQ: PQQ enzyme repea 38.0 75 0.0016 17.8 4.7 25 262-286 3-27 (38)
500 PF08954 DUF1900: Domain of un 38.0 1.1E+02 0.0024 23.3 5.5 62 255-316 18-83 (136)
No 1
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-49 Score=325.73 Aligned_cols=301 Identities=53% Similarity=0.901 Sum_probs=278.2
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
.+|++...|..-.+.|+++.|+++|.+|++++.|.+++|||..++++++++..++.++...+|.+++..++.++. -
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt----k 77 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST----K 77 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC----C
Confidence 467888889888999999999999999999999999999999999999999999999999999999888776654 2
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAV 174 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
.+.+||++++.+++.++.|.||++.|++|..+|.+..++|+|.|++||+||+|..+|+..+...+.++.+++|.|.++|+
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence 24899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEec-CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC-CCee
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN-TNTE 252 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~ 252 (338)
+.....|++||+|++..+|+..+.+. +...+.+.+.|||+|++++.++..+.+++.|..+|.....+..+.... ...+
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 99988999999999999999988776 556789999999999999999999999999999999888888876654 2357
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC-CCCceEEEEEcCCCceEEeecceEEEeeeCCC
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 319 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~~~ 319 (338)
++|+||++++++|+.||+|.+|++++++.+..+.+ +.+.+.|++|+|...++++++..+.+|.+...
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccc
Confidence 89999999999999999999999999999999998 79999999999999999999999999987643
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-45 Score=314.00 Aligned_cols=287 Identities=19% Similarity=0.323 Sum_probs=253.0
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
+...-.|-+++|..+.|+.+++.|+|||.+|.+++|+..+...+.++.+|...+.++.|++..+..-.++ .+.+++
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat----~s~Dgt 242 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLAT----ASADGT 242 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceee----eccCCc
Confidence 3334457789999999999999999999999999999999988889999998898888877632221122 245699
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAM 176 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 176 (338)
+++|++.+-.+++.+.||..+|..++|+|+|++|+|+|.|.+-++||+++++.....+.|.. ..++|.++|.++++|+
T Consensus 243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence 99999998899999999999999999999999999999999999999999876554555443 4589999999999999
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
-|..-++||+|+..+ .+.+.+|..+|..|.|+|+|..+++|+.|++++|||++.... .+.+..|.+-|+.|.|+
T Consensus 323 lD~~~RvWDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~ 396 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYS 396 (459)
T ss_pred ccchhheeecccCcE----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--ceecccccchhhheEec
Confidence 999999999998765 344568999999999999999999999999999999976544 56778888999999999
Q ss_pred C-CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 257 P-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 257 ~-~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
| .|.+|+|+|.|++++||.-.++.+++.+.||.+.|.++..+|+++++++++ .++|+|.
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9 789999999999999999999999999999999999999999999999997 6899995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-44 Score=304.37 Aligned_cols=289 Identities=22% Similarity=0.348 Sum_probs=245.4
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc---------
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN--------- 91 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
+.+.||+++|-+++|+|+|..|+|||.|.++|+||+.+...+.+..+|.+-|.|++|++++..+..++..+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 34569999999999999999999999999999999999999999999999999999999887655432211
Q ss_pred ---------------------------------CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC
Q 019603 92 ---------------------------------LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD 138 (338)
Q Consensus 92 ---------------------------------~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D 138 (338)
..+.++++++||+..+.++..+.||+..|+|+.|--+ .+|+|||.|
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~D 267 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQD 267 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCC
Confidence 0134789999999999999999999999999999744 499999999
Q ss_pred CeEEEEECCCcceeeeeeecCc--cEE-----------EEcCC-------------------------CCEEEEEEcCCe
Q 019603 139 HSVRIWDLRVNACQGILRLRGR--PTV-----------AFDQQ-------------------------GLVFAVAMEAGA 180 (338)
Q Consensus 139 ~~I~iWd~~~~~~~~~~~~~~~--~~~-----------~~~~~-------------------------~~~~~~~~~dg~ 180 (338)
++||+|+...+.+...++.|.. +.+ +|++. +..+++|+.|.+
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 9999999988888777765543 212 23333 346999999999
Q ss_pred EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC
Q 019603 181 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260 (338)
Q Consensus 181 i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 260 (338)
+.+|+..... .++.. ..+|...|+.+.||||+++|++++-|+.|++|+..+|+.+..|+ +|-..|..++|+.|.+
T Consensus 348 lflW~p~~~k-kpi~r--mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR--GHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 348 LFLWNPFKSK-KPITR--MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR--GHVAAVYQVAWSADSR 422 (480)
T ss_pred EEEecccccc-cchhh--hhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--hccceeEEEEeccCcc
Confidence 9999854322 12222 34788899999999999999999999999999999998887665 5556799999999999
Q ss_pred EEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEee
Q 019603 261 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWI 315 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~ 315 (338)
+|+|||.|.+++||++++.+....|.||...|.++.|+|||..+++|+. .+++|.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999999999999974 478884
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-41 Score=275.56 Aligned_cols=288 Identities=18% Similarity=0.299 Sum_probs=250.6
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
.+...++|+||.++|+++.|++|.++|+|+|.||.+.|||..+......+.....-|...+|+|.+..+.++. ++
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG---Ld-- 118 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG---LD-- 118 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC---cC--
Confidence 4566689999999999999999999999999999999999988776666666656677777877777666543 22
Q ss_pred CceeEEEEccCC------eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcC
Q 019603 96 GESLRYLSMYDN------RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ 167 (338)
Q Consensus 96 ~~~i~~~~~~~~------~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~ 167 (338)
+..-+|++.+. +..+.+.+|++.+.++.|-+ +..|+|+|-|.++-+||+++++....|..|...+ +.+.|
T Consensus 119 -N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 119 -NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred -ceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 55667777543 34677899999999999987 5689999999999999999999888888776654 56778
Q ss_pred -CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC
Q 019603 168 -QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 168 -~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
+++.+++|+-|+..++||+|...+ .....+|...|+.++|.|+|.-+++++.|++.++||++....+..|+....
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~ 272 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQC----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI 272 (343)
T ss_pred CCCCeEEecccccceeeeeccCcce----eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc
Confidence 889999999999999999997543 233468999999999999999999999999999999999888888887777
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEe
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 314 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw 314 (338)
...+++++||..|++|+.|..|..+.|||.-+++.+..|.+|...|.||..+|||..+++|| .+++||
T Consensus 273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 78899999999999999999999999999999999999999999999999999999999998 789999
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.4e-42 Score=273.15 Aligned_cols=270 Identities=19% Similarity=0.301 Sum_probs=230.8
Q ss_pred CEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe--EEEeecCCc
Q 019603 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR--ILRYFKGHK 117 (338)
Q Consensus 40 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~H~ 117 (338)
-+|+|+|.|.+||+|...+|.|.+++.+....|+.+.+.++...+..+ .-..||+||+.+++ ++.+|.+|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-------~~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA-------GNQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc-------cCCeeEEEEccCCCCCceeEEeccC
Confidence 389999999999999999999999999999999999988776655432 22689999998765 588999999
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec-CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCee
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 196 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 196 (338)
+.|+++.|..+|++++|||+||++||||+|...|.+.++.. ....+.++|+...++++.++|.|++||++...+. .
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~---~ 160 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT---H 160 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc---c
Confidence 99999999999999999999999999999998888777654 3456899999999999999999999999864331 2
Q ss_pred EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEE----eeeCCCCCCCeeEEECCCCCEEEEEcCCCcEE
Q 019603 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG----FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 272 (338)
Q Consensus 197 ~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~----~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~ 272 (338)
.++......|..+...|||.+++.+...|+.++|++........ ..+..|...+..+.||||++|||++|.|.+++
T Consensus 161 ~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 161 ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence 23333456799999999999999999999999999876543332 23456778899999999999999999999999
Q ss_pred EEECCCC-CeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEeeeCCC
Q 019603 273 AWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIPNPS 319 (338)
Q Consensus 273 vWd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~~~~~ 319 (338)
||+.+.- +....+++|+.+++..+||.|+++|++|+. ..++|.++..
T Consensus 241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred EEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 9999987 778889999999999999999999999984 5899976644
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-39 Score=263.17 Aligned_cols=287 Identities=17% Similarity=0.299 Sum_probs=234.8
Q ss_pred ccccceeeccCCcceeEEEeecC-CCEEEEeeCCCcEEEEEcC-----CCeeEeEEeecccCeeeEEEeecCCeeEEecC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRK-DDLLVTASDDDSVRLYDIV-----SAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
++.+..+|.+|.+.|+.++..+. -+.+++++.|+++.+|++. .|..++.+.+|.|.+.-+.++.++...+.+
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~-- 81 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA-- 81 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec--
Confidence 34566789999999999999987 4589999999999999985 456678888988888888888887766644
Q ss_pred ccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC----ccEEEE
Q 019603 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAF 165 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~----~~~~~~ 165 (338)
+-++++|+||+.+++..+.|.||+.-|.+++|++++++++|||.|++|++||+. +.|.-++...+ ..++.|
T Consensus 82 ----swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 82 ----SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred ----cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEE
Confidence 335899999999999999999999999999999999999999999999999985 44443444333 356899
Q ss_pred cCC--CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 166 DQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 166 ~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
+|+ ...+++++.|+++++||++..+-. ....+|+..++.|.+||||..+++++.|+.+.+||++.++... .
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~----~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly--s- 229 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLR----TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY--S- 229 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchh----hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE--e-
Confidence 998 679999999999999999875431 1234789999999999999999999999999999999887643 2
Q ss_pred CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC----C-----CCceEEEEEcCCCceEEeec--ceEE
Q 019603 244 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG----N-----IGVVACLKWAPRRAMFVAAS--SVLS 312 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~----h-----~~~v~~l~~~p~~~~l~s~s--~~~~ 312 (338)
..+...|.+++|+|+--.| +...+-.|+|||+.++.++..|+. . .....+|+|++||+.|+++- ..|+
T Consensus 230 l~a~~~v~sl~fspnrywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 230 LEAFDIVNSLCFSPNRYWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred ccCCCeEeeEEecCCceeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence 3455689999999986555 555666799999999888877652 1 33456799999999999984 5689
Q ss_pred EeeeC
Q 019603 313 FWIPN 317 (338)
Q Consensus 313 iw~~~ 317 (338)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99653
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4e-40 Score=269.34 Aligned_cols=291 Identities=18% Similarity=0.264 Sum_probs=244.8
Q ss_pred HhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC-eeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA-KLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
-.+.+++..+.+|+|+|+.+.|+|+|.+|+|||.|..|.||++... +-...+.+|..+|.-+.+..+...++++
T Consensus 34 s~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~----- 108 (338)
T KOG0265|consen 34 SSLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC----- 108 (338)
T ss_pred ccccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe-----
Confidence 3456788889999999999999999999999999999999996422 2233455777778778888887777754
Q ss_pred CCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCC
Q 019603 93 DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGL 170 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~ 170 (338)
+++.+++.||..+|+.++.+++|++.|+++.-..-|. .+.||+.|+++|+||+|+++++++++... ...+.|...+.
T Consensus 109 -gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 109 -GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD 187 (338)
T ss_pred -cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccc
Confidence 4569999999999999999999999999998554454 46799999999999999999888775433 34588999999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC----eeEEEeeeCCC
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG----EKRCGFSLEPS 246 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~----~~~~~~~~~~~ 246 (338)
.+.+|.-|+.|++||+|.... .+.+.||...|+.+..+|+|.++++-+.|+++++||.+.- .++..|+...|
T Consensus 188 qv~sggIdn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~h 263 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIH 263 (338)
T ss_pred ceeeccccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchh
Confidence 999999999999999986432 4566799999999999999999999999999999998632 33555666555
Q ss_pred C--CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEEe
Q 019603 247 P--NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 314 (338)
Q Consensus 247 ~--~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw 314 (338)
. .....++|+|++.++..|+.|+.+++||..+...++.|.||.+.|++++|+|..+++.++++.-.|+
T Consensus 264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeE
Confidence 4 3445789999999999999999999999999999999999999999999999999999998765554
No 8
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-39 Score=256.56 Aligned_cols=284 Identities=20% Similarity=0.302 Sum_probs=239.9
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
+...+..|+++|..++|+-||+|.++||.|++||+||...|.+++++.+|.+.+.-...+.+.+.+.. .+.++.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s------~GgDk~ 82 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFAS------CGGDKA 82 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccccc------CCCCce
Confidence 45678999999999999999999999999999999999999999999999998887777766654432 345688
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce--eeeeeecCccEEEEcCCCCEEEEEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC--QGILRLRGRPTVAFDQQGLVFAVAM 176 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
+.+||+.+|+..+.|++|.+.|+.+.|......++|||.|.++++||-|+... +.++........++.-.+..++.|+
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS 162 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGS 162 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeec
Confidence 99999999999999999999999999999999999999999999999987653 3333322233456666778899999
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
.||++|.||+|..... ..--..+|+++.|+|+++..++++.+..+++.|..+|+....|.++.....-..++++
T Consensus 163 ~DGtvRtydiR~G~l~------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLS------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred cCCcEEEEEeecceee------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 9999999999865321 1112457999999999999999999999999999999988878777666666778899
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCc-eEEEEEcCCCceEEeec-ceEEEe
Q 019603 257 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS-SVLSFW 314 (338)
Q Consensus 257 ~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~-v~~l~~~p~~~~l~s~s-~~~~iw 314 (338)
.....+++||+||.|++||+.....+..+..|... |.+|.++|.-..|+++. .....|
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 99999999999999999999999999999988888 89999999877666665 345555
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-39 Score=273.05 Aligned_cols=291 Identities=18% Similarity=0.322 Sum_probs=252.4
Q ss_pred HHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 13 TVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 13 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
=+.++.+...+.||..+|+.+-|+|+-..+++++.|.+|++||.++|++...+.+|..++..++|...+..++..
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tc----- 168 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATC----- 168 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEec-----
Confidence 345667778889999999999999999999999999999999999999988888988888878877666554433
Q ss_pred CCCCceeEEEEccC-CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCC
Q 019603 93 DSTGESLRYLSMYD-NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQG 169 (338)
Q Consensus 93 ~~~~~~i~~~~~~~-~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~ 169 (338)
+.+-.+++||... .++++.+.+|...|.++.|-|.|.+|+|+|.|.+|+.||+.++.|++++..+.. ..+..+.||
T Consensus 169 -SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 169 -SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred -CCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 2335599999976 567888999999999999999999999999999999999999999999887664 457788999
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC---------------CCEEEEEecCCcEEEEEccC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---------------GKSMLLTTTNNNIYVLDAYG 234 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---------------~~~i~~~~~d~~i~i~~~~~ 234 (338)
.++++++.|.++++|-..+.++. .++..|...|-+++|-|. +.++.+++.|++|++||+.+
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCK----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred eEEEecCCCceEEEEEeccchhh----hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 99999999999999998765432 123356667777777653 24788889999999999998
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEE
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 312 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~ 312 (338)
+. +.+++.+|.++|..++|+|.|+||+|+.+|++++|||++++.+.+.+..|...|+++.|+.+..++++|+ .+++
T Consensus 324 g~--cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 324 GM--CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred Ce--EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence 84 5578889999999999999999999999999999999999999999999999999999999999999998 5799
Q ss_pred Eee
Q 019603 313 FWI 315 (338)
Q Consensus 313 iw~ 315 (338)
+|.
T Consensus 402 vwE 404 (406)
T KOG0295|consen 402 VWE 404 (406)
T ss_pred eee
Confidence 994
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-40 Score=280.78 Aligned_cols=246 Identities=21% Similarity=0.306 Sum_probs=217.4
Q ss_pred ccceeeccCCcceeEEEeecC--CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 18 AMAAIFSDFGGKINSLDFHRK--DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~--~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
+.+.+|.||+..|.++.|+|. +..|+||+.||++++|++.+...+..+.+|...|..+.|++++..+..++ -
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tas------f 281 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTAS------F 281 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecc------c
Confidence 567899999999999999997 56899999999999999998888888899888888888877776655432 2
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFA 173 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 173 (338)
+.+-|+||+.++..+-...||...|.+++|+|+|..++|||.|..-||||+|++.|+-.+..|..++ +.|+|+|+.++
T Consensus 282 D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 282 DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLA 361 (459)
T ss_pred ccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEe
Confidence 3789999999998888889999999999999999999999999999999999999987777666554 78999999999
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC-CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
+|+.|++++|||+|..+. .+.+.+|...|+.|+|+| .|.++++++.|+++++|...+...+. .+.+|...|.+
T Consensus 362 Tgs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k--sLaGHe~kV~s 435 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK--SLAGHEGKVIS 435 (459)
T ss_pred ecCCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch--hhcCCccceEE
Confidence 999999999999986443 455678999999999999 67889999999999999877765544 56688899999
Q ss_pred EEECCCCCEEEEEcCCCcEEEEE
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
+..+||+++++|++.|+++++|.
T Consensus 436 ~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 436 LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999995
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-38 Score=289.04 Aligned_cols=272 Identities=21% Similarity=0.359 Sum_probs=225.1
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
+..-...++|+.|++|+.+||.|-.|..|++|.+...++. .+..... -..+ ...+++-.....
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~-------l~~~---------d~~sad~~~~~~ 436 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKDASD-------LSNI---------DTESADVDVDML 436 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccchhh-------hccc---------cccccchhhhhc
Confidence 3344567899999999999999999999999999865432 2211100 0000 001222335555
Q ss_pred EccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEEEEcCCe
Q 019603 103 SMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGA 180 (338)
Q Consensus 103 ~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~ 180 (338)
|..+....+++.||.++|.++.|+|+.++|+|||.|+++|+|.+.+..|....+.|-.|+ +.|+|.|.+|++++.|++
T Consensus 437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred cccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 666666777799999999999999999999999999999999999999987777665554 789999999999999999
Q ss_pred EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC
Q 019603 181 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260 (338)
Q Consensus 181 i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 260 (338)
.++|...... | .....+|...|.|+.|+|+..|+++++.|.+|++||..+|..++.|.+ |..+|++++|||+|+
T Consensus 517 ArLWs~d~~~--P--lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 517 ARLWSTDHNK--P--LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeecccCC--c--hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC--CCCceEEEEEcCCCc
Confidence 9999865422 2 133458888999999999999999999999999999999999988864 677899999999999
Q ss_pred EEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 261 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
||+||++||.|++||+.+++++..+.+|.+.|.+|.|+.+|..||+|+ .++++|..-
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 999999999999999999999999999999999999999999999998 479999644
No 12
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-38 Score=266.04 Aligned_cols=289 Identities=19% Similarity=0.300 Sum_probs=237.6
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe---eEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK---LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
...+|..|+++|+-+.||++|+||||+|.|.+..+|++.... +.+++.+|..+|..+.|+++..+++....
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~------ 289 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF------ 289 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc------
Confidence 445778999999999999999999999999999999886543 46788888899999999999888775432
Q ss_pred CceeEEEEccCCeEEEeec-CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee---cCccEEEEcCCCCE
Q 019603 96 GESLRYLSMYDNRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---RGRPTVAFDQQGLV 171 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~-~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~ 171 (338)
+..+++||+.+|++...+. +|...+.+++|.||+..+++||.|++|..||+..+. ....+. .....+++.+||..
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE
Confidence 2569999999999887774 467899999999999999999999999999986443 222222 12234788999999
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
+++...|..|++++........ +......|+.+..|.+++++++.-.+..+++||+.....+..|.++.....+.
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEecccceeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE
Confidence 9999999999999865422111 12345679999999999999999999999999998776666666665555666
Q ss_pred eEEECCC-CCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEeec--ceEEEeeeCCC
Q 019603 252 EATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 252 ~~~fs~~-~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s--~~~~iw~~~~~ 319 (338)
+-+|... ..+++|||+|+.||||+..+++++..+.||...|+||+|+|..+ +||+|| ++|+||.+.+.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 7778654 48999999999999999999999999999999999999999765 888887 68999987755
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=281.28 Aligned_cols=293 Identities=24% Similarity=0.420 Sum_probs=247.6
Q ss_pred cccceeeccC-CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe--eEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 17 MAMAAIFSDF-GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK--LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 17 ~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
|.....+.+| ...|.++.|+++|+++++++.|+.+++|+....+ .+..+..|...+..++|++++..++.+
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~------ 221 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG------ 221 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe------
Confidence 3345556565 7899999999999999999999999999998777 666667788899999999988866654
Q ss_pred CCCceeEEEEc-cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCC
Q 019603 94 STGESLRYLSM-YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGL 170 (338)
Q Consensus 94 ~~~~~i~~~~~-~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~ 170 (338)
+.+.++|+||+ ..+..++++++|...|++++|+|+++.++||+.|++|+|||++++++...+..+... .++|++++.
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence 34589999999 566899999999999999999999999999999999999999999999998887654 478999999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCC--ceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC-
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA--EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP- 247 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~- 247 (338)
.+++++.|+.+++||....... . ...+.++.. .++.+.|+|+++++++++.|+.+++|++..+.....+..+...
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~-~-~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~ 379 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKL-C-LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV 379 (456)
T ss_pred EEEEcCCCccEEEEECCCCcee-e-eecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc
Confidence 9999999999999998876521 0 112222222 5899999999999999999999999999988777766655443
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC-CCceEEEEEcCCCceEEeec----ceEEEeeeC
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS----SVLSFWIPN 317 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s----~~~~iw~~~ 317 (338)
..+.+..+++.++++++|+.|+.|++||+.++..+..+.+| ...+..+.|+|..+++++++ ..+++|..+
T Consensus 380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 13445566889999999999999999999999999999999 99999999999999999987 358888654
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=269.49 Aligned_cols=288 Identities=16% Similarity=0.311 Sum_probs=237.3
Q ss_pred ccceeeccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCC-CeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 18 AMAAIFSDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVS-AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
.++.++.||...|+++.|.| .+.+|+|+|.|+.|+||++.. +++++++.+|..+|..++|+..+...++++.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf------ 278 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF------ 278 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec------
Confidence 45678899999999999999 899999999999999999976 8899999999999999999988888776543
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeeeee--cCccEEEEcCCCCEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQGLVF 172 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 172 (338)
++.+++||+++|+++..+. -...++++.|+|++ +.|++|+.|+.|+.||+|+++....+.. .....+.|-++|..+
T Consensus 279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 3899999999999988764 23457889999998 7899999999999999999986544432 334568889999999
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC---eeEEEeeeCCCCCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG---EKRCGFSLEPSPNT 249 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~ 249 (338)
++.+.|+.++||+.+..-.. .+....+.....+|..+|++.+++.-+.|+.|.++..... ++...|+++...+-
T Consensus 358 issSDdks~riWe~~~~v~i---k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPI---KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred eeeccCccEEEEEcCCCccc---hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 99999999999997653211 1111223344678899999999999999999999975422 22233455544566
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEeec--ceEEEee
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWI 315 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s--~~~~iw~ 315 (338)
...+.|||||++|++|+.||.+.+||.++-+.+..+++|.+.|..+.|||..+ .+|+++ +.|++|.
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 77899999999999999999999999999999999999999999999999865 666665 6899993
No 15
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-37 Score=258.23 Aligned_cols=246 Identities=22% Similarity=0.365 Sum_probs=202.6
Q ss_pred eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCe
Q 019603 61 LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHS 140 (338)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~ 140 (338)
+-.++.+|..++.++.|++.+..+..+ +++.++|+||+.+..+..++++|++-|.+++|+||++.||||+.||+
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tG------sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTG------SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS 180 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEec------CCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCe
Confidence 334566777888899998876666543 44589999999999999999999999999999999999999999999
Q ss_pred EEEEECCCccee-eeeeecCcc--EEEEc-----CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEc
Q 019603 141 VRIWDLRVNACQ-GILRLRGRP--TVAFD-----QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 212 (338)
Q Consensus 141 I~iWd~~~~~~~-~~~~~~~~~--~~~~~-----~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~s 212 (338)
|++||.+++++. ..+..|... .++|. |....+++++.||.++|||..... ..+.+.+|+..|+|++|-
T Consensus 181 I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~----~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT----CVRTLSGHTASVTCVRWG 256 (480)
T ss_pred EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce----EEEEeccCccceEEEEEc
Confidence 999999998764 445555443 35554 456789999999999999986533 246678999999999996
Q ss_pred CCCCEEEEEecCCcEEEEEccCCeeEEEe---------------------------------------------------
Q 019603 213 NDGKSMLLTTTNNNIYVLDAYGGEKRCGF--------------------------------------------------- 241 (338)
Q Consensus 213 p~~~~i~~~~~d~~i~i~~~~~~~~~~~~--------------------------------------------------- 241 (338)
.+| ++++++.|++|++|+...|.....+
T Consensus 257 G~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 257 GEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred CCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 443 7889999999999987654321111
Q ss_pred --------------------------eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEE
Q 019603 242 --------------------------SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL 295 (338)
Q Consensus 242 --------------------------~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l 295 (338)
+..+|...|+.+.||||++|+||+|-|++|++|+-++|+-+..|.||.+.|+.+
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEE
Confidence 112344556788999999999999999999999999999999999999999999
Q ss_pred EEcCCCceEEeec--ceEEEeeeC
Q 019603 296 KWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 296 ~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+|+.|.++|++|| .++|+|.+.
T Consensus 416 awsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred EeccCccEEEEcCCCceEEEEEee
Confidence 9999999999998 589999754
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-35 Score=239.96 Aligned_cols=252 Identities=17% Similarity=0.248 Sum_probs=208.3
Q ss_pred HHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 13 TVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 13 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
+.+.-.+.+.|.||...|+.+..++||++++|+|+|+++|+||+++++..+.+.+|...+.+++|+.+..++..+
T Consensus 49 d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSG----- 123 (315)
T KOG0279|consen 49 DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSG----- 123 (315)
T ss_pred ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecC-----
Confidence 455566788999999999999999999999999999999999999999888999999999999999988877654
Q ss_pred CCCCceeEEEEccCCeEEEeecC--CccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEc
Q 019603 93 DSTGESLRYLSMYDNRILRYFKG--HKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFD 166 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~--H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~ 166 (338)
+-++++++|+.-... ..++.. |++-|+++.|+|+ +.+|+++|+|++||+||+++.+....+..+.. ..+.++
T Consensus 124 -SrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS 201 (315)
T KOG0279|consen 124 -SRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS 201 (315)
T ss_pred -CCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC
Confidence 345899999986543 333333 4899999999998 67999999999999999998877666665543 458999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
|||...++|+.||.+.+||++..+. ...-++...|.+++|+|+. |.+....+..|+|||+.+...+..+.....
T Consensus 202 pDGslcasGgkdg~~~LwdL~~~k~-----lysl~a~~~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~ 275 (315)
T KOG0279|consen 202 PDGSLCASGGKDGEAMLWDLNEGKN-----LYSLEAFDIVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGI 275 (315)
T ss_pred CCCCEEecCCCCceEEEEEccCCce-----eEeccCCCeEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhcccccc
Confidence 9999999999999999999986543 2223567789999999965 555556667799999998877766554322
Q ss_pred -------CCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 247 -------PNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 247 -------~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
......++|++||+.|++|-.|+.|++|.+.
T Consensus 276 g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 276 GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2345678999999999999999999999975
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.5e-34 Score=248.25 Aligned_cols=284 Identities=25% Similarity=0.457 Sum_probs=236.9
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
+.+|.+|.++|++++|+|++++|++++.|+.+++|++.+++.......+...+..+.+.++...+++++ .++.+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~~~~i 75 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS------SDKTI 75 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc------CCCeE
Confidence 456789999999999999999999999999999999998877666666666676777776654554432 25899
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcCCCCEEEEEEc
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAME 177 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 177 (338)
++|++.+++....+.+|...|.++.|+++++++++++.|+.|++||+++++....+..+. ...+.++|++.+++++..
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence 999999888888899999999999999998899999999999999999777766666444 345788999888888888
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 257 (338)
++.+++||++.... .. ....+...+.++.|+|+++.+++++.++.+.+||...++....+ ..+...+..+.|+|
T Consensus 156 ~~~i~i~d~~~~~~--~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~ 229 (289)
T cd00200 156 DGTIKLWDLRTGKC--VA--TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL--RGHENGVNSVAFSP 229 (289)
T ss_pred CCcEEEEEcccccc--ce--eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch--hhcCCceEEEEEcC
Confidence 99999999875332 21 22356668999999999999999999999999999876655433 24556789999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
++.++++++.||.|++||+.+++....+..|...|.+++|+|++..+++++ +.+++|.
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999998899999999999999999999999999999999999999987 4688883
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=230.61 Aligned_cols=270 Identities=18% Similarity=0.307 Sum_probs=223.4
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe--eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK--LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
..++.--.+.|+.|.+.|++++|+.|+. -.||+||+.+++ .+.++.++.+.|..+.|..++..++.+ +.++
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTg------seDg 105 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTG------SEDG 105 (311)
T ss_pred EEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEec------CCCc
Confidence 3444333578999999999999999886 569999998776 477888888899999998777666543 4568
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcCCCCEEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAV 174 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 174 (338)
++|+||++...+.+.|+ |..+|+++..+|+..-|++|..+|.|++||++...|...+.... ...+.+.|+|.+++.
T Consensus 106 t~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred eEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 99999999866666554 88999999999999999999999999999999887755444322 245788999999999
Q ss_pred EEcCCeEEEEeCCCCCC-CCCee-EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 175 AMEAGAIKLFDSRSYDK-GPFDT-FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~-~~~~~-~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
+...|...+|++-.... .++.. ..+..|+..+..+.+|||++++++++.|.+++||+..+. .+...++.+|..++..
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWD 263 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEe
Confidence 99999999999754221 11111 123467888999999999999999999999999998766 5666778888899999
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEc
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 298 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~ 298 (338)
++||.||+||+||+.|+.+|+|++..++.++.+.+|...-.|++.+
T Consensus 264 c~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999999999998888777654
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.5e-35 Score=244.91 Aligned_cols=287 Identities=16% Similarity=0.280 Sum_probs=238.5
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
|++-+++.+|-|.|.++++.|-+++++|||.|++|+|||+.+|++..++.++...+.-+.++..-.+++++ +.+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~------ged 214 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA------GED 214 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe------cCC
Confidence 55667889999999999999999999999999999999999999999999888888888888766666654 345
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAV 174 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 174 (338)
+.++.||+..++.++.+.||-..|.+|+.+|.-+.|+|||.|.++|+||+|++..+.++..|..+. +.+.|-...+++
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence 899999999999999999999999999999999999999999999999999998887777666554 556666778999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
++.|++|++||++..+. ...+..|...+.+++.+|....+++++ .+.|+-|++..|..... +.+|...+..++
T Consensus 295 ~S~D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~n--lsgh~~iintl~ 367 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQN--LSGHNAIINTLS 367 (460)
T ss_pred ecCCceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccC-CccceeccCCccchhhc--cccccceeeeee
Confidence 99999999999987543 233446788899999999876565554 56789999887776554 556777788888
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCeEeEee-----C---CCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-----G---NIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~-----~---h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
.+.|| ++++|+++|.+..||.+++...+.+. | ....|.+-.|...+..|++|. .+|++|.-+
T Consensus 368 ~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 368 VNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 88765 77899999999999999875544331 1 235789999999999999985 579999543
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-33 Score=247.23 Aligned_cols=293 Identities=15% Similarity=0.302 Sum_probs=226.8
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEe---ecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTY---HKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
-..++..|..=|++++|+|||.+++|+|.|+++.|||-.+|+.+..+. .|..++..++|+++...++.++ .
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S------a 255 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS------A 255 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec------C
Confidence 345667899999999999999999999999999999999999887766 6677888999999888877653 3
Q ss_pred CceeEEEEccCCeE-------------------------------------------EEeecCCccceEEEEEcCCCCEE
Q 019603 96 GESLRYLSMYDNRI-------------------------------------------LRYFKGHKERVISLCMSPVNDSF 132 (338)
Q Consensus 96 ~~~i~~~~~~~~~~-------------------------------------------~~~~~~H~~~V~~l~~~~~~~~l 132 (338)
+.++|+||+.++++ .+.+.||.+.|++|..+|++++|
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 47777777765432 34467999999999999999999
Q ss_pred EEEECCCeEEEEECCCcceeeee-eecCccEEEEcCCC-CEEEEEEcCCeEEEEeCCCCC--CC--------CC------
Q 019603 133 MSGSLDHSVRIWDLRVNACQGIL-RLRGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYD--KG--------PF------ 194 (338)
Q Consensus 133 ~Sgs~D~~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~--~~--------~~------ 194 (338)
+|||.||.|.-||..++.+.+.. +.+...+..+.... ..+.+.+-|.++++.++.... .. |.
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 99999999999999888765443 33444444443322 344555566788888653211 00 00
Q ss_pred ----e-------eEEec--------CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 195 ----D-------TFLVG--------GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 195 ----~-------~~~~~--------~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
. ..++. .-.....+++++|++..+++++.|+++++|.+..++......+..|...++.++|
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 0 00011 1123456899999999999999999999999987776666677788899999999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEe-EeeCCCCceEEEEEcCCCceEEeecc--eEEEeeeC
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIPN 317 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~~~ 317 (338)
|||+.|||+|...+.+-+||+.+++... .+.=|.+.|.||+|+|++.++|+||- .+.||.+.
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 9999999999999999999999876633 34449999999999999999999984 57778544
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-33 Score=277.32 Aligned_cols=284 Identities=16% Similarity=0.288 Sum_probs=220.1
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC----e----eEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA----K----LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
+.+|.+.|.+++|+|+|++|+|||.|++|+|||+... . ...... ....+..++|++.....+.++ +
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~-----~ 552 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASS-----N 552 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEE-----e
Confidence 3459999999999999999999999999999998532 1 111111 233456666654322333222 2
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeeeeecCc-cEEEE-cCCCCE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAF-DQQGLV 171 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~-~~~~~~ 171 (338)
.++++++||+.+++.+..+.+|.+.|++++|+| ++.+|+|||.|++|++||++++.+...+..+.. ..+.| .++|..
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~ 632 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRS 632 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCE
Confidence 358999999999999999999999999999997 678999999999999999998888766654432 34566 457899
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe----eEEEeeeCCCC
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE----KRCGFSLEPSP 247 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~ 247 (338)
+++|+.|+.|++||++.... +. ....+|...|.++.|. ++.++++++.|+.|++||+..+. ......+.+|.
T Consensus 633 latgs~dg~I~iwD~~~~~~-~~--~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 633 LAFGSADHKVYYYDLRNPKL-PL--CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred EEEEeCCCeEEEEECCCCCc-cc--eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 99999999999999986431 12 2345788899999997 67889999999999999986431 11233455677
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe-------------eCCCCceEEEEEcCCCceEEeec--ceEE
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-------------NGNIGVVACLKWAPRRAMFVAAS--SVLS 312 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-------------~~h~~~v~~l~~~p~~~~l~s~s--~~~~ 312 (338)
..+..++|+|++++|++|+.|+.|++|+...+..+..+ ..|...|.+++|+|++..|++|+ ++|+
T Consensus 709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 78889999999999999999999999998766544322 23556799999999999999987 5799
Q ss_pred Eeee
Q 019603 313 FWIP 316 (338)
Q Consensus 313 iw~~ 316 (338)
||.+
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9954
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=265.80 Aligned_cols=295 Identities=16% Similarity=0.220 Sum_probs=253.7
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
.|..-+..|.+++|+|.-..++++=..|.|++||.+=+.++.....|..+|..+.|++.. .+..++ +++-.|++
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q--plFVSG----GDDykIkV 77 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ--PLFVSG----GDDYKIKV 77 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC--CeEEec----CCccEEEE
Confidence 455667889999999999999999999999999999999988888888899998886543 333332 44578999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEEEEEcCC
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg 179 (338)
|+..+.+++.++.||-+.|..+.|++.-.+|+|+|.|.|||||+..+++|+.++..|... +..|.|....+++++-|.
T Consensus 78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 999999999999999999999999999999999999999999999999999888876654 467999999999999999
Q ss_pred eEEEEeCCCCCC-------------------------CCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccC
Q 019603 180 AIKLFDSRSYDK-------------------------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 234 (338)
Q Consensus 180 ~i~i~d~~~~~~-------------------------~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~ 234 (338)
+||+||+..... ..+..+.++||...|+.++|+|.-..|++|+.|+.|++|.+..
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence 999999642110 0122456789999999999999999999999999999998876
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-ceEEE
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSF 313 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~~i 313 (338)
.+....-++.+|.+.|.++-|+|....++|.|+|++|||||+.++..+++|....+.-|.|+-||..+++|+|= +-+.+
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V 317 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV 317 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE
Confidence 65555567789999999999999999999999999999999999999999999999999999999999999994 56777
Q ss_pred eeeCCCCCC
Q 019603 314 WIPNPSSNS 322 (338)
Q Consensus 314 w~~~~~~~~ 322 (338)
++....+++
T Consensus 318 FkleRErpa 326 (1202)
T KOG0292|consen 318 FKLERERPA 326 (1202)
T ss_pred EEEcccCce
Confidence 776644443
No 23
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=4.6e-36 Score=254.90 Aligned_cols=280 Identities=24% Similarity=0.418 Sum_probs=231.0
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe--eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK--LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
.+..|.++|..+.|-++...|++|+.|..|++|+....+ .+.++.+...++..+.|.+.+...+.+ +.++..
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa------s~d~~~ 243 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA------SNDKNL 243 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee------cCCCce
Confidence 567899999999999999999999999999999997766 556677777777777777666665543 345889
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEcC
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA 178 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d 178 (338)
++|++.+.+...++.||++.|+++.|......++||+.|.+||+||+.+..|.+++-..+ ..-+... ...+++|..|
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~D 321 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFD 321 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccc
Confidence 999999999999999999999999999877779999999999999999988876554322 2223222 4567889999
Q ss_pred CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC--CCCCeeEEEC
Q 019603 179 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--PNTNTEATFT 256 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~fs 256 (338)
++||+||+|.... ...... .+.|+++..++++..+++++.|+++.++|+.+.+....|+..+. ....+.+.||
T Consensus 322 kkvRfwD~Rs~~~----~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 322 KKVRFWDIRSADK----TRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred cceEEEeccCCce----eeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 9999999987543 122222 34799999999999999999999999999998888777766543 2357889999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCC--ceEEEEEcCCCceEEeecc--eEEEe
Q 019603 257 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAASS--VLSFW 314 (338)
Q Consensus 257 ~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~l~s~s~--~~~iw 314 (338)
|++.|+++||.||.|+||++.++|+...++.... .|++++|+|.|..+++++. .+.+|
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999999999875443 5999999999999999984 46777
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.7e-36 Score=253.17 Aligned_cols=278 Identities=21% Similarity=0.343 Sum_probs=229.5
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
+-.|+.|.|.|+|+.|++|+.-|-+-||+..+-......+.|...|.++.+++++..++.+. .|+.|++|+..-
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD------~gG~iKyWqpnm 169 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGD------KGGMIKYWQPNM 169 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcC------CCceEEecccch
Confidence 35689999999999999999999999999854333333466788999999999888777543 358999998754
Q ss_pred CeEEEeecCC-ccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEE
Q 019603 107 NRILRYFKGH-KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKL 183 (338)
Q Consensus 107 ~~~~~~~~~H-~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i 183 (338)
. .++.+++| ...|++++|+|.+..|+|||.|++|+|||.+..+...++..++. .++.|+|....+++++.|..|++
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 3 34445555 49999999999999999999999999999987776666766653 56899999999999999999999
Q ss_pred EeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCC-CEE
Q 019603 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYV 262 (338)
Q Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~-~~l 262 (338)
||.|+..+- ..+.+|...|..+.|+|++.++++++.|..++++|+++.+.+ ++..+|...+++++|+|-. .+|
T Consensus 249 WDprSg~cl----~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl--~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 249 WDPRSGSCL----ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL--FTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred ecCCCcchh----hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH--HHhhcchhhheeeccccccccce
Confidence 999987652 224578889999999999999999999999999999854433 4455677789999999965 567
Q ss_pred EEEcCCCcEEEEECCCCCeEeEe-eCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 263 VSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
.+|+.||.|..|.+...+++..+ .+|.+.|++|+|||=|.+|++|| .++++|..+
T Consensus 323 tsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 78999999999999865665555 48999999999999999999998 579999644
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.5e-35 Score=266.33 Aligned_cols=246 Identities=21% Similarity=0.321 Sum_probs=207.7
Q ss_pred CHHHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecC
Q 019603 10 DDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 10 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
++.+.++-..-..+.||.|+|+++.|+|+.++|+|||.|+++|+|.+.+..++-.+.+|..++..+.|++.+ .++++.
T Consensus 434 ~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFata 511 (707)
T KOG0263|consen 434 DMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATA 511 (707)
T ss_pred hhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEec
Confidence 445555666677799999999999999999999999999999999999999998899999999999998654 333332
Q ss_pred ccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCC
Q 019603 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG 169 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
+.+++-++|......+.+.+.||.+-|.|+.|+|+..++++||.|++||+||+.++..
T Consensus 512 ----s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~------------------ 569 (707)
T KOG0263|consen 512 ----SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS------------------ 569 (707)
T ss_pred ----CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE------------------
Confidence 4568899999999999999999999999999999999999999999999999876543
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
+|+| .||..+|.+++|||+|+++++++.|+.|.+||+..++....+ .+|.+.
T Consensus 570 -----------VRiF---------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--~~Ht~t 621 (707)
T KOG0263|consen 570 -----------VRIF---------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL--KGHTGT 621 (707)
T ss_pred -----------EEEe---------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh--hcccCc
Confidence 4555 268889999999999999999999999999999988766544 456789
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCCCC------------------------eEeEeeCCCCceEEEEEcCCCceEE
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINTRN------------------------EVACWNGNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~------------------------~~~~~~~h~~~v~~l~~~p~~~~l~ 305 (338)
+.+++||.+|..||+||.|.+|++||+.... .+..|..-..+|.+|.|...+-.|+
T Consensus 622 i~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~ 701 (707)
T KOG0263|consen 622 IYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLA 701 (707)
T ss_pred eeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEE
Confidence 9999999999999999999999999986422 2344555566788888887775555
Q ss_pred ee
Q 019603 306 AA 307 (338)
Q Consensus 306 s~ 307 (338)
.|
T Consensus 702 ~g 703 (707)
T KOG0263|consen 702 VG 703 (707)
T ss_pred ec
Confidence 54
No 26
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-35 Score=243.31 Aligned_cols=283 Identities=19% Similarity=0.339 Sum_probs=236.5
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEE--------eecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT--------YHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
+.+.-+.|..|+|||+||+|||-||-|.+||..+|+..+-+ -....++.|++|+.+...+..+ +-+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG------sqD 284 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG------SQD 284 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc------CcC
Confidence 55677899999999999999999999999999999875433 1233467788887665544322 445
Q ss_pred ceeEEEEccCCeEEEeec-CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEE
Q 019603 97 ESLRYLSMYDNRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 173 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~-~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 173 (338)
+.|++|.+.+|.+++.|. +|+..|+++.|+.|+..++|+|.|.++|+-.+++|+|.+.++.+... ...|.++|..++
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 899999999999998885 89999999999999999999999999999999999999888877643 478999999999
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC-CCCEEEEEecCCcEEEEEccCCeeEEEee-eCCCCCCCe
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNT 251 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~i~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~ 251 (338)
+++.||++++|+.++..+ ..++...+....|..+-.-| +.+.+++|...++++|.++. |..+..|. +.+..+...
T Consensus 365 saSsDgtvkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFI 441 (508)
T ss_pred EecCCccEEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceE
Confidence 999999999999887554 33444445667788777766 45689999999999999975 55555443 334445678
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeee
Q 019603 252 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~ 316 (338)
+++.||.|.++++.++|+.++++.+.+|+..+++.-|...|..|+.||..+.+|+-+ +.+++|.+
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 899999999999999999999999999999999999999999999999999999987 56899964
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=230.08 Aligned_cols=241 Identities=20% Similarity=0.358 Sum_probs=203.9
Q ss_pred ccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC------eeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 24 SDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA------KLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
+--...|..++|+|.|++++.||-|+...||++.+. +..+.+.+|...+.+..|.. ...++.+ +++.
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~------SGD~ 166 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTG------SGDM 166 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEec------CCCc
Confidence 344567899999999999999999999999999854 22334566666677777765 3344433 4457
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAV 174 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 174 (338)
+.-+||+++++.++.|.||.+-|.+|+++| +++.|+||+-|++.++||+|.+.|..+|..+.. +.+.|.|+|.-|++
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 899999999999999999999999999999 889999999999999999999999988887654 56999999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
|+.|++.|+||+|.... +..+.-......|+.++||-.|++++++..|.++.+||...++.... +.+|.+.|.++.
T Consensus 247 GSDD~tcRlyDlRaD~~--~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~--L~GHeNRvScl~ 322 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQE--LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV--LAGHENRVSCLG 322 (343)
T ss_pred cCCCceeEEEeecCCcE--EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE--eeccCCeeEEEE
Confidence 99999999999997432 33333334567899999999999999999999999999988877654 457788999999
Q ss_pred ECCCCCEEEEEcCCCcEEEEE
Q 019603 255 FTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd 275 (338)
.+|||.-|+|||.|.++|||.
T Consensus 323 ~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 323 VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ECCCCcEEEecchhHheeecC
Confidence 999999999999999999994
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.8e-32 Score=219.17 Aligned_cols=285 Identities=16% Similarity=0.290 Sum_probs=223.7
Q ss_pred cccceeeccCCcceeEEEeecC-CCEEEEeeCCCcEEEEEcCCCe---eEeEE-eecccCeeeEEEeecCCeeEEecCcc
Q 019603 17 MAMAAIFSDFGGKINSLDFHRK-DDLLVTASDDDSVRLYDIVSAK---LIKTT-YHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
+.++..+.+|++.|..++|+|- |..|+|||.|+.||+|+...+. +...+ ..|...+..+++++++..+.+++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF-- 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF-- 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec--
Confidence 4467789999999999999997 8899999999999999998533 32222 346678999999999886665543
Q ss_pred CCCCCceeEEEEccCC--eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc---ceeeeeeecC--ccEEE
Q 019603 92 LDSTGESLRYLSMYDN--RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLRG--RPTVA 164 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~--~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~---~~~~~~~~~~--~~~~~ 164 (338)
+.++-+|.-.++ +++.++.||.+.|.+++|+++|++||+||.|+.|-||.+..+ +|..+++.|. ...+.
T Consensus 82 ----D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 82 ----DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred ----cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 378888987755 578899999999999999999999999999999999988633 4666666554 34589
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
|+|...+|++++-|++|++|+-.... .-.-...+.+|...|.++.|+|.|..+++++.|++++||-.... +. .
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~dd-dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~ 230 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDD-DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-G 230 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCC-CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-h
Confidence 99999999999999999999754211 10112345678889999999999999999999999999975422 11 1
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe------Ee-EeeCCCCceEEEEEcCC-CceEEeec--ceEEEe
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE------VA-CWNGNIGVVACLKWAPR-RAMFVAAS--SVLSFW 314 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~------~~-~~~~h~~~v~~l~~~p~-~~~l~s~s--~~~~iw 314 (338)
.|...+..+.|. ...|+|+++|+.|+++.-...-. +. .-..|...|++|+|+|. ...|++++ +.+++|
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW 308 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence 233456778887 67899999999999999875311 11 22478889999999995 66888886 679999
Q ss_pred ee
Q 019603 315 IP 316 (338)
Q Consensus 315 ~~ 316 (338)
..
T Consensus 309 ~l 310 (312)
T KOG0645|consen 309 EL 310 (312)
T ss_pred Ee
Confidence 64
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-33 Score=240.67 Aligned_cols=282 Identities=15% Similarity=0.288 Sum_probs=230.4
Q ss_pred eccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCC--CeeEe------------EEeecccCeeeEEEeecCCeeEEe
Q 019603 23 FSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVS--AKLIK------------TTYHKKHGADCVCFTHHPSSVICS 87 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
...|+.+|..++|+|-.. ++++++.|-+.++|++.. ..+.. .-......++++.|+.+++.+..+
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 345999999999999766 899999999999999974 11111 001123568888888887776654
Q ss_pred cCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEc-
Q 019603 88 TKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFD- 166 (338)
Q Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~- 166 (338)
+. ++.+|+|+.. |.++.+|..|+++|.+|.|...|.+|+|++-|+++.+||..+++....+.++..+.+.++
T Consensus 254 ~~------~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 254 SE------DGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred ec------CcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 32 4889999974 567888999999999999999999999999999999999999988888888887744333
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
.+...|++.+.|+.|+++-+.. ..|..++ .+|..+|.++.|+|.+.++++++.|++++||++.... +...++.|
T Consensus 327 ~~~~~F~ts~td~~i~V~kv~~--~~P~~t~--~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~--~~~~l~~H 400 (524)
T KOG0273|consen 327 QSNDEFATSSTDGCIHVCKVGE--DRPVKTF--IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN--SVHDLQAH 400 (524)
T ss_pred ecCceEeecCCCceEEEEEecC--CCcceee--ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc--chhhhhhh
Confidence 2345788999999999997643 3455444 3699999999999999999999999999999965443 34456677
Q ss_pred CCCCeeEEECCCC---------CEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 247 PNTNTEATFTPDG---------QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 247 ~~~~~~~~fs~~~---------~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
...+..+.|+|.| ..+++++.|++|++||+..+.++..|..|+.+|.+|+|+|+++++|+|+ +.+.+|.
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 7888999999875 4699999999999999999999999999999999999999999999998 5678885
Q ss_pred eC
Q 019603 316 PN 317 (338)
Q Consensus 316 ~~ 317 (338)
.+
T Consensus 481 ~~ 482 (524)
T KOG0273|consen 481 TK 482 (524)
T ss_pred cc
Confidence 43
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=255.80 Aligned_cols=296 Identities=17% Similarity=0.266 Sum_probs=227.4
Q ss_pred cceeecc-CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 19 MAAIFSD-FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 19 ~~~~~~~-h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.++.++. |++||..++|+|.|.+|++||.|+.+++||+..+.+...+.++...+..+.|.++....+..+. ..++
T Consensus 96 ~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg----~~D~ 171 (775)
T KOG0319|consen 96 LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASG----ATDG 171 (775)
T ss_pred HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeec----CCCc
Confidence 4455566 9999999999999999999999999999999999999999998888888999888776554432 4568
Q ss_pred eeEEEEccCCe-EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec----------C-------
Q 019603 98 SLRYLSMYDNR-ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----------G------- 159 (338)
Q Consensus 98 ~i~~~~~~~~~-~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~----------~------- 159 (338)
++++|++.+.. ++.++..|...|++++|.+++..++|+|.|+.+.+||+..-++.++.+.. .
T Consensus 172 ~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~ 251 (775)
T KOG0319|consen 172 TVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGE 251 (775)
T ss_pred eEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcce
Confidence 99999998654 47788999999999999999999999999999999998532222211100 0
Q ss_pred --------------------------cc----------------------------------------------------
Q 019603 160 --------------------------RP---------------------------------------------------- 161 (338)
Q Consensus 160 --------------------------~~---------------------------------------------------- 161 (338)
.+
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~ 331 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKF 331 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeee
Confidence 00
Q ss_pred ------------------------------------EEEEc--CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCC
Q 019603 162 ------------------------------------TVAFD--QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 203 (338)
Q Consensus 162 ------------------------------------~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 203 (338)
.++++ .+|.++++++.|.++++|.+........-.-...+|+
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~ 411 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT 411 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc
Confidence 00011 2244556666666666665522111000001134788
Q ss_pred CceEEEEEcCCCC-EEEEEecCCcEEEEEccCC-------eeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 204 AEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGG-------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 204 ~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
..|.+++++..+. .+++++.|.++++|++... ...+.+....|...|++++.+|+.+++||||.|++.+||+
T Consensus 412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeec
Confidence 8899999977654 6788999999999998652 1122234456788999999999999999999999999999
Q ss_pred CCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 276 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 276 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
+.....+.+|.||...|+||.|+|..+.+|++| .++|||.+..
T Consensus 492 le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 492 LEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred ccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence 999899999999999999999999999999998 4899998763
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-33 Score=252.07 Aligned_cols=281 Identities=19% Similarity=0.330 Sum_probs=237.8
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
..+.||...|.+++|+.+...++||+ .++++||+..+.++++++... .+.+.+|-+....++.+.+ .+.+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k------~Gel~ 437 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK------NGELQ 437 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc------CCceE
Confidence 46779999999999999988888886 578999999999999987654 5566667666666665543 27799
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC-----cceee--------eeeec-CccEEEEc
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-----NACQG--------ILRLR-GRPTVAFD 166 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-----~~~~~--------~~~~~-~~~~~~~~ 166 (338)
++|+.+...+.+.++|.+.|++++.+|+++.+++||.|++|++||... +...+ ++++. ..-++.++
T Consensus 438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 999999999999999999999999999999999999999999999642 11111 22221 22357899
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
|||.+++++--|.++++|-+.+.+. -..+.||.-+|.+|..|||++.+++|+.|++|++|-+.-|.+-. .+..|
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK--S~fAH 591 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK--SFFAH 591 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh--hhhcc
Confidence 9999999999999999997665431 12356999999999999999999999999999999988776543 45577
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEeee
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIP 316 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~~ 316 (338)
...++++.|-|...+++|+|.|+.|+-||-.+-+++..+.+|...|+|++.+|+|.+++++|. +|++|..
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 788999999999999999999999999999999999999999999999999999999999984 7999943
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=243.25 Aligned_cols=280 Identities=20% Similarity=0.332 Sum_probs=235.2
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
...|++.+|++.-++|++|=..|-..+|++..-.+++.+....+.+..++++..++.+..+.. .-+.+-+|...+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~-----klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS-----KLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC-----ccceEEEEEeec
Confidence 378999999999999999999999999999998888888777778888888776776654432 125788998887
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEE
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~ 184 (338)
-..+-..+||...+++++++|||.++++|+.||.|||||.+++-|..+|..|.. ..+.|...|..+++++-||+++.|
T Consensus 340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 777777899999999999999999999999999999999999999988887653 458899999999999999999999
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC-cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEE
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 263 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~ 263 (338)
|++.+.+ +-++. ........|++..|.|..+.+++.|. .|++|++.+|+.... +.+|.++|.+++|+|.+..|+
T Consensus 420 DlkRYrN--fRTft-~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi--LsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 420 DLKRYRN--FRTFT-SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI--LSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred eecccce--eeeec-CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--hcCCCCcceeeEEccccCeEE
Confidence 9987654 22332 24456678899999999888888776 699999999987664 457778899999999999999
Q ss_pred EEcCCCcEEEEECCCC-CeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 264 SGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
|||.|++||+||+-.. ..+.++. +..-+.+++|+|+|..+|+++ +.|.+|.+.
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 9999999999999654 3455554 457789999999999999986 679999754
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=243.12 Aligned_cols=276 Identities=19% Similarity=0.304 Sum_probs=238.3
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
+.|..|+..|.++.|+|....++.+=..|.+.|||.++...++++.....++....|-.-...++++ +++..||
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G------sDD~~Ir 80 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG------SDDMQIR 80 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe------cCCceEE
Confidence 4566799999999999999999999999999999999999999988877788877776555555543 4468899
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeeeeeecCcc--EEEEcCCC-CEEEEEE
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRP--TVAFDQQG-LVFAVAM 176 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-~~~~~~~~~~~~--~~~~~~~~-~~~~~~~ 176 (338)
+++..+++.++.|.+|.+.|.+++.+|...+++|+|.|.+||+||...+ .|..+++.|... .++|+|+. ..+++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 9999999999999999999999999999999999999999999998765 577778877664 47899854 6899999
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC--CEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG--KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~--~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
-|++|++|.+.+.. ..+.+.+|...|+|+.|-|.| .++++++.|..++|||..+..++. ++++|...+..+.
T Consensus 161 LDrTVKVWslgs~~----~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~--TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPH----PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ--TLEGHTNNVSFVF 234 (794)
T ss_pred ccccEEEEEcCCCC----CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH--HhhcccccceEEE
Confidence 99999999987532 235667999999999998754 489999999999999988766554 5567778899999
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
|+|.-..++|||+||++|||+-.+-+...++.-.-+.||||+-.+.+..++.|.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 999999999999999999999999888888877778999999999988888885
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=233.87 Aligned_cols=251 Identities=22% Similarity=0.330 Sum_probs=216.2
Q ss_pred HhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC-CeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS-AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
-.-++..+.|.||...|..++|+..|++|+|||.|-++++||.++ .+++++..++.+.+.+++|-+.+..++..+
T Consensus 137 ~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s---- 212 (406)
T KOG0295|consen 137 TETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS---- 212 (406)
T ss_pred ccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc----
Confidence 334455788999999999999999999999999999999999986 567888889999999999998887776543
Q ss_pred CCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcC---
Q 019603 93 DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQ--- 167 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~--- 167 (338)
-+++|+.|++.++.++++|.+|..-|..+....||..++|||.|.+|++|=+.+++|...++.+..+ +++|-|
T Consensus 213 --rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~ 290 (406)
T KOG0295|consen 213 --RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS 290 (406)
T ss_pred --cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc
Confidence 3589999999999999999999999999999999999999999999999999998876666655443 344322
Q ss_pred ------------CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC
Q 019603 168 ------------QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 168 ------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~ 235 (338)
.+.++.+++.|++|++||+.+..+ .+.+.+|...|+.+.|+|.|+||+++..|+++++||+...
T Consensus 291 ~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 291 YPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred CcchhhccCCCCCccEEEeecccceEEEEeccCCeE----EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 135889999999999999876533 5667799999999999999999999999999999999887
Q ss_pred eeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 236 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
.++..+. .|+..++++.|+.+-.|++||+-|.++++|..
T Consensus 367 ~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 QCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeccC--CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 7665444 56667899999999999999999999999975
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=223.86 Aligned_cols=289 Identities=11% Similarity=0.138 Sum_probs=222.7
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
.+..+.+|+..|+++.|+.+|.+|+||+.+|.|+||...++.....+...-..+.-++|++ ...+..+ .+.+++
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp--~a~illA----G~~DGs 171 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP--RAHILLA----GSTDGS 171 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc--cccEEEe----ecCCCc
Confidence 5678899999999999999999999999999999999999987776654444555555544 3333222 245689
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec---CccEEEEcCCCCEEEEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQQGLVFAVA 175 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 175 (338)
+..|.+.+....+.+.||+.++++=.|.|+|+.+++|..||+|++||+++++....+... ..+.+.++..+..+..+
T Consensus 172 vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 172 VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG 251 (399)
T ss_pred EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence 999999988889999999999999999999999999999999999999999876555421 23456666677777777
Q ss_pred EcCCeEEEEeCCCCCC----CCCeeEEecCCCCceEEEEEcC---CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC
Q 019603 176 MEAGAIKLFDSRSYDK----GPFDTFLVGGDTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~i~~v~~sp---~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
..++.+.+.+..+.+. .+....+...+...+.++.+.| .-.+.+.++.||+|.|||+.....+.. -.|..
T Consensus 252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---c~he~ 328 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---CEHED 328 (399)
T ss_pred cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee---ccCCC
Confidence 7777666655433210 0000011112334455555555 445677888999999999876544332 24566
Q ss_pred CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEeeeC
Q 019603 249 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIPN 317 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~~~ 317 (338)
.|+++.|-+ ..||++++.||.||.||.++|.+..++.||...|.+++.+|+.++++++|. +.+|+..+
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 799999998 899999999999999999999999999999999999999999999999984 67787654
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.7e-33 Score=221.48 Aligned_cols=284 Identities=18% Similarity=0.313 Sum_probs=230.0
Q ss_pred ceeeccCCcceeEEEeec---CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 20 AAIFSDFGGKINSLDFHR---KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~---~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
+.+-.||+.+|..++|+| +|=+|+|++.|+.-.+=+-++|..+.+..+|...|...++..+... .++ .+.+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~--aas----aaad 80 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATR--AAS----AAAD 80 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhh--hhh----hccc
Confidence 445679999999999985 7889999999999999999999999999999888877666443221 111 2445
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-eeeeeec--CccEEEEcCCCCEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLR--GRPTVAFDQQGLVFA 173 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~ 173 (338)
.+-++||.-+|..+..|. |+.-|.+++|+.|.++|++||.++.+||||++..+. ...+..+ +...+.|......++
T Consensus 81 ftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL 159 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL 159 (334)
T ss_pred chhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE
Confidence 788999999988877765 999999999999999999999999999999987653 2223322 234567777677777
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeE
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 253 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 253 (338)
+...|+.||+||.|+... .+.+. .+..|+++.++++|+ +++.+..+.|.+||..+-..+..+ ..+..|.+.
T Consensus 160 SSadd~tVRLWD~rTgt~--v~sL~---~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~---k~P~nV~SA 230 (334)
T KOG0278|consen 160 SSADDKTVRLWDHRTGTE--VQSLE---FNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSY---KMPCNVESA 230 (334)
T ss_pred eeccCCceEEEEeccCcE--EEEEe---cCCCCcceeeccCCC-EEEEecCceeEEeccccccceeec---cCccccccc
Confidence 889999999999998653 22222 255689999999998 556667789999998766554433 345678999
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCCCeEeEe-eCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCC
Q 019603 254 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 254 ~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~ 319 (338)
+++|+...+++|++|..++.||+.+++.+..+ ++|.++|.||+|+|+|...|+|| ++|+||+..|.
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 99999999999999999999999999999887 89999999999999999999998 68999987654
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-31 Score=229.44 Aligned_cols=266 Identities=19% Similarity=0.314 Sum_probs=225.3
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
..|++|+|+.+|.+|++|+.||-+|||+.. |.++.++..|..++..+.|+..+.+++.+ +.++++-+||..++
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~------~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSG------GVDGTTILWDAHTG 308 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEec------cCCccEEEEeccCc
Confidence 569999999999999999999999999986 66666777888888888888777777754 34589999999999
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEEEEEcCCeEEEEe
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~i~i~d 185 (338)
...+.+.-|..+-..+.|.. +..|++++.|+.|+++.+......+++..|..+ .+.|+|.|.+|++++.|++++||.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 99999999999878888864 457999999999999999877788888776654 478899999999999999999999
Q ss_pred CCCCCCCCCeeEEecCCCCceEEEEEcCCC---------CEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 186 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDG---------KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~---------~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
+..... + .-+..|..+|..+.|+|.| ..+++++.|++|++||...+..+.. +-.|..+|.+++|+
T Consensus 388 ~~~~~~--~--~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~--f~kH~~pVysvafS 461 (524)
T KOG0273|consen 388 MGQSNS--V--HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT--LMKHQEPVYSVAFS 461 (524)
T ss_pred cCCCcc--h--hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe--eccCCCceEEEEec
Confidence 664322 1 2234678889999999875 3488999999999999999876654 55677789999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 257 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 257 ~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
|+|+|+|+|+.||.|.+|++.+++.++.+.+ .+.|..|.|+-+|..+.++-
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred CCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEe
Confidence 9999999999999999999999999999876 46799999999998877763
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3e-33 Score=233.31 Aligned_cols=268 Identities=19% Similarity=0.288 Sum_probs=213.9
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
-...|+|+.+. +..++||..|++|+|||..+..+++.+.+|...+.|+.+.. . ++.+ .+++.++++||+.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--r-viis-----GSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--R-VIVS-----GSSDSTVRVWDVN 265 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--e-EEEe-----cCCCceEEEEecc
Confidence 45778999874 67899999999999999999999999999988888887742 2 3322 2567899999999
Q ss_pred CCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce---eeeeeecCccEEEEcCCCCEEEEEEcCCeEE
Q 019603 106 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC---QGILRLRGRPTVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 106 ~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 182 (338)
++++++++-+|.+.|..+.|+ +.+++|+|.|.+|.+||+..... ..++..+-...-..+.+..++++++.|++|+
T Consensus 266 tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTik 343 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 343 (499)
T ss_pred CCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEE
Confidence 999999999999999999997 46999999999999999976542 2233333222233445566999999999999
Q ss_pred EEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEE
Q 019603 183 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 262 (338)
Q Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l 262 (338)
+|++.+... ...+.+|...|-|+.| .++++++|+.|++|++||...|.+... +++|..-+.++.| |.+.+
T Consensus 344 vW~~st~ef----vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv--LeGHEeLvRciRF--d~krI 413 (499)
T KOG0281|consen 344 VWSTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRF--DNKRI 413 (499)
T ss_pred EEeccceee----ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH--HhchHHhhhheee--cCcee
Confidence 999876443 2345688889999888 688999999999999999999977654 4566667888888 57899
Q ss_pred EEEcCCCcEEEEECCCCC---------eEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 263 VSGSGDGTLHAWNINTRN---------EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~---------~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+||+-||+|+|||+..+. ++..+..|.|.|..|.|..- .+++++ .+|-||...
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTILIWDFL 477 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce--EEEeccCCCeEEEEEcC
Confidence 999999999999998653 34556789999999999543 566665 689999865
No 39
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.4e-31 Score=217.27 Aligned_cols=271 Identities=18% Similarity=0.295 Sum_probs=215.8
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
...|+.+.|+|.+..|+.+++||++++||.....+. ....+.+++..++|.. ...++.+ ..++.++.+|+.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~F~d-~~~~~~G------~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCAFAD-ESTIVTG------GLDGQVRRYDLNT 84 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeeeccC-CceEEEe------ccCceEEEEEecC
Confidence 678999999999999999999999999999876433 3344556677777754 2333322 3358999999988
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeC
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 186 (338)
++..+ +..|...|.++.+.+....++|||+|++|++||.|...+...+.. +..+.+.+-.|..|++|+.+..+.+||+
T Consensus 85 ~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 85 GNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred Cccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCCEEEEeecCceEEEEEc
Confidence 76443 567999999999999888999999999999999987555444333 2356778888999999999999999999
Q ss_pred CCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC----eeEEEeeeCCCC-------CCCeeEEE
Q 019603 187 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG----EKRCGFSLEPSP-------NTNTEATF 255 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~-------~~~~~~~f 255 (338)
|.... ++ +.....-...+.++++-|+++-+++++.+|+|.+-..... ++...|+.|+.. .+|++++|
T Consensus 163 Rn~~~-~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 163 RNLDE-PF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred ccccc-hh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 97653 22 1122234567889999999999999999999998766544 444556555432 36788999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
+|--+.||||+.||.|.+||..++|.++.|......|.+|+|+.+|..||.+++
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999999999999888889999999999999999975
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-32 Score=243.89 Aligned_cols=289 Identities=18% Similarity=0.268 Sum_probs=232.9
Q ss_pred HhccccceeeccCCcceeEEEee-cCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFH-RKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
+.+.+..+.+-|-.++|..++|- |+.++|+.++.-+.+|+|++.+..+. .+.+|...+..+.....+ .+.++
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g--~llat---- 382 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSG--DLLAT---- 382 (775)
T ss_pred ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccC--cEEEE----
Confidence 45667778888999999999875 67889999999999999999887765 455665556555522222 22222
Q ss_pred CCCCceeEEEEccCCe----EEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcce---eeee------eec
Q 019603 93 DSTGESLRYLSMYDNR----ILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC---QGIL------RLR 158 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~----~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~---~~~~------~~~ 158 (338)
.+-++++++|.++++. ++....||++.|.+++++..+ .+|+|+|.|+++|+|++...+. ...+ ..|
T Consensus 383 ~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred ecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 2446899999985432 355668999999999997654 4899999999999999976221 1111 112
Q ss_pred --CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe
Q 019603 159 --GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 236 (338)
Q Consensus 159 --~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~ 236 (338)
..++++++|+..++++|++|++.+||++... .. ...+.||+..+.+|.|+|.++.+++++.|.+|+||.+.+..
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---~l-~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---RL-LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCc---eE-EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce
Confidence 3467999999999999999999999998732 12 23456999999999999999999999999999999998887
Q ss_pred eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEe
Q 019603 237 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFW 314 (338)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw 314 (338)
++. ++.+|...|..+.|-.+|++|+|++.||-|++||+++..++.++.+|...||+|+-+|...++++|++ .+.+|
T Consensus 539 Clk--T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 539 CLK--TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eee--eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 665 55677888999999999999999999999999999999999999999999999999999999998874 57778
Q ss_pred e
Q 019603 315 I 315 (338)
Q Consensus 315 ~ 315 (338)
.
T Consensus 617 k 617 (775)
T KOG0319|consen 617 K 617 (775)
T ss_pred e
Confidence 4
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-30 Score=236.36 Aligned_cols=288 Identities=14% Similarity=0.231 Sum_probs=235.8
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCC-CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDD-DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
-+|+++..+.--..+|..+.|+..|+.|+-|+.- |.+-+|++++...+....+|...+.++.+++++..++.+
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG------ 368 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATG------ 368 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEec------
Confidence 3566777776666899999999999999987764 799999999877666667777788999999888777653
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc---cEEEEcCCCC
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGL 170 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~ 170 (338)
+.++.+|+|+..++-|..+|..|+..|+.+.|+..++.++|.|.||+||.||++...+-+++..... .+++.+|.|.
T Consensus 369 ~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe 448 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE 448 (893)
T ss_pred cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence 4468999999999999999999999999999999999999999999999999998888777775443 3588899999
Q ss_pred EEEEEEcCC-eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe-eEEEeeeCCCCC
Q 019603 171 VFAVAMEAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPN 248 (338)
Q Consensus 171 ~~~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~ 248 (338)
++.+|..|. .|.+|++.+++. .-.+.||.++|.++.|+|++..+++++.|++|++||..... ...++ ....
T Consensus 449 lV~AG~~d~F~IfvWS~qTGql----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~s 521 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQL----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRS 521 (893)
T ss_pred EEEeeccceEEEEEEEeecCee----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eecc
Confidence 999998875 688999876542 12346899999999999999999999999999999986542 22222 3345
Q ss_pred CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee--------------------CCCCceEEEEEcCCCceEEeec
Q 019603 249 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------------------GNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------------------~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.++.++|+|+|+.|+.+.-||.|.+||......+..+. ......+.|.+++||.++.+|+
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence 68899999999999999999999999998765553322 2236789999999999999997
Q ss_pred c--eEEEee
Q 019603 309 S--VLSFWI 315 (338)
Q Consensus 309 ~--~~~iw~ 315 (338)
. .+.+..
T Consensus 602 ~sn~iCiY~ 610 (893)
T KOG0291|consen 602 ESNSICIYD 610 (893)
T ss_pred CcccEEEEE
Confidence 4 344443
No 42
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.3e-31 Score=215.30 Aligned_cols=274 Identities=18% Similarity=0.272 Sum_probs=218.7
Q ss_pred cCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCC-CeeE-eEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 25 DFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVS-AKLI-KTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
.-.+.|.+|+|||... +|+.+|+|++||+|+++. |... +....+..++.+++|+.+++.++.++ .++..++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~------~Dk~~k~ 98 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG------CDKQAKL 98 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec------cCCceEE
Confidence 3578999999999554 555899999999999986 3332 23344567889999999888777543 3589999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCC--EEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCC
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVND--SFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~--~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 179 (338)
||+.+++ ...+..|.++|.++.|-+... .|+|||+|++||.||+|......++.+.+ .+.+.+-...+++++..++
T Consensus 99 wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVLYPMAVVATAER 176 (347)
T ss_pred EEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhccCceeEEEecCC
Confidence 9999995 455678999999999987655 79999999999999999888777777654 3455666667899999999
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC--eeEEEeeeCCCCC-------CC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSPN-------TN 250 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~-------~~ 250 (338)
.|.+|+++.... .+... .......+.+++.-++.+..+.|+.+|++.|..+..+ .....|+.++..+ .|
T Consensus 177 ~i~vynL~n~~t-e~k~~-~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 177 HIAVYNLENPPT-EFKRI-ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred cEEEEEcCCCcc-hhhhh-cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 999999875432 11111 1123556888888888888899999999999988776 4455666666422 35
Q ss_pred eeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 251 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
++++|+|.-..|+|+|+||+...||-..+.+++..+.|..+|+|.+|+.+|.++|.+.
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 6789999999999999999999999999888999999999999999999999999984
No 43
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4.9e-31 Score=230.00 Aligned_cols=289 Identities=19% Similarity=0.308 Sum_probs=222.1
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe----eEeEE-eecccCeeeEEEeecCCeeEEecCccC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK----LIKTT-YHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
.....|.+|+..|.++++.|.|..|+|||.|.+|++||++.-. ..+.+ ....|.+..+.|+..+..+++.+.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--- 234 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--- 234 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec---
Confidence 4455778899999999999999999999999999999996321 22222 345678999999998888887653
Q ss_pred CCCCceeEEEEccCCeE------------EEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcc-eeeeeeec
Q 019603 93 DSTGESLRYLSMYDNRI------------LRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNA-CQGILRLR 158 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~------------~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~-~~~~~~~~ 158 (338)
....+++|-...+. +...+||...+++..|+|.++ .|+|+|.|+++||||+..-+ ...+|+..
T Consensus 235 ---~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 235 ---SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred ---CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 13456666443222 234589999999999999875 79999999999999996543 34445432
Q ss_pred C---c----cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCC--ceEEEEEcCCCCEEEEEecCCcEEE
Q 019603 159 G---R----PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA--EVCDIKFSNDGKSMLLTTTNNNIYV 229 (338)
Q Consensus 159 ~---~----~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~v~~sp~~~~i~~~~~d~~i~i 229 (338)
. . ..+.|+++|..+|+|+.||.|++|+.+.....+. ......|.. .|+++.||++|+++++-+.|+.+++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-eEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 1 1 3478999999999999999999999765443332 222334554 8999999999999999999999999
Q ss_pred EEccCCe-eEEEeeeCCCCCCCeeEEECCCCCEEEEEcC------CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc
Q 019603 230 LDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 230 ~~~~~~~-~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~------Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
||++..+ .+..+........-+.++|||+.++|+||.+ -|.+.++|..+-..++.+.-....|..+.|||.-+
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 9987543 2333444455556788999999999999753 56799999999988988877788899999999988
Q ss_pred eEEeecc--eEEE
Q 019603 303 MFVAASS--VLSF 313 (338)
Q Consensus 303 ~l~s~s~--~~~i 313 (338)
+++++++ ++.+
T Consensus 471 Qi~~gsgdG~~~v 483 (641)
T KOG0772|consen 471 QIFAGSGDGTAHV 483 (641)
T ss_pred heeeecCCCceEE
Confidence 8877764 4554
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.9e-33 Score=230.82 Aligned_cols=249 Identities=18% Similarity=0.292 Sum_probs=206.0
Q ss_pred HHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 13 TVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 13 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
+.+++...+.|.||+|.|.|+.|. .+.++|||+|.+|++||+++|++++++.+|..++..+.|+ ...++..+
T Consensus 223 D~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcS---- 294 (499)
T KOG0281|consen 223 DKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCS---- 294 (499)
T ss_pred ccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEec----
Confidence 345677788899999999999996 5699999999999999999999999999998888887775 34454433
Q ss_pred CCCCceeEEEEccCCe---EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCC
Q 019603 93 DSTGESLRYLSMYDNR---ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG 169 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~---~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
-+.++++|++.... +.+.+.||...|+.+.|+ .++++|+|.|.+||+|++.+.+++.++..+...+.+....|
T Consensus 295 --kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~ 370 (499)
T KOG0281|consen 295 --KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRD 370 (499)
T ss_pred --CCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccC
Confidence 35899999998754 345678999999999986 57999999999999999999999999888887788888899
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE-------EEee
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-------CGFS 242 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~-------~~~~ 242 (338)
.++++|+.|.+|++||+..+.+ ...+.||..-|.++.| +.+.|++|+.||+|++||+..+..- +...
T Consensus 371 rlvVSGSSDntIRlwdi~~G~c----LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~ 444 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT 444 (499)
T ss_pred eEEEecCCCceEEEEeccccHH----HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHh
Confidence 9999999999999999876543 2235688888999999 6778999999999999998766433 2333
Q ss_pred eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 243 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
+..|.+.+..+-| |...+++++.|.+|-|||...+..
T Consensus 445 lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 445 LVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred hhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 4456667766666 568899999999999999987543
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2e-30 Score=218.57 Aligned_cols=281 Identities=21% Similarity=0.297 Sum_probs=216.5
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEee-cCCeeEEecCccCCCCCceeEEEE
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTH-HPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
.|.+.|.++... ++.++||+.||.+++||.. |++.+++.+|..++..+.+.. ++..-.+.+ .+-+.++++|.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvs----as~Dqtl~Lw~ 175 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVS----ASMDQTLRLWK 175 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEE----ecCCceEEEEE
Confidence 689999999887 8899999999999999986 788888888888877555533 332111111 23458999999
Q ss_pred ccCCeE----EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc-------------------------eeee
Q 019603 104 MYDNRI----LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-------------------------CQGI 154 (338)
Q Consensus 104 ~~~~~~----~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~-------------------------~~~~ 154 (338)
...++. ++..+||...|-+++..+++..++|||+|.+|+||+..... ...+
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 877653 34456999999999999999999999999999999932110 0001
Q ss_pred eeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEc
Q 019603 155 LRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~ 232 (338)
+..|.. ..+.|++ ...+.+++.|.+|+.||+.+.... ..+ ..+..+.++.++|..+++++++.|..+++||.
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~---~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK---STL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecccce---eee--ecCcceeEeecccccceeeecCCCCceeecCC
Confidence 111111 2255666 667889999999999998875431 111 12456899999999999999999999999998
Q ss_pred cCC-eeEEEeeeCCCCCCCeeEEECCCCCE-EEEEcCCCcEEEEECCCCC-eEeEeeCCCCceEEEEEcCCCceEEeec-
Q 019603 233 YGG-EKRCGFSLEPSPNTNTEATFTPDGQY-VVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS- 308 (338)
Q Consensus 233 ~~~-~~~~~~~~~~~~~~~~~~~fs~~~~~-l~sgs~Dg~i~vWd~~~~~-~~~~~~~h~~~v~~l~~~p~~~~l~s~s- 308 (338)
+.+ ..+..+++.+|.++|..+.|+|...| |+||+.|+++++||+++.+ +++.+.+|...|.++.|+.. ..+++|+
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGa 408 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGA 408 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccC
Confidence 765 34456778899999999999997754 8899999999999999877 89999999999999999765 4677876
Q ss_pred -ceEEEeeeCCC
Q 019603 309 -SVLSFWIPNPS 319 (338)
Q Consensus 309 -~~~~iw~~~~~ 319 (338)
.+++|+...+.
T Consensus 409 D~~l~i~~~~~~ 420 (423)
T KOG0313|consen 409 DNKLRIFKGSPI 420 (423)
T ss_pred cceEEEeccccc
Confidence 57888865544
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-30 Score=208.46 Aligned_cols=274 Identities=16% Similarity=0.251 Sum_probs=218.5
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEE--eecccCeeeEEEeec-CCeeEEecCccCCCCCc
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT--YHKKHGADCVCFTHH-PSSVICSTKYNLDSTGE 97 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 97 (338)
+.+.+|.++|.+|+|+.+|..|++|+.|+++++|+++..+.++.+ .+|...+..+++.+. +..++. .++|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~at------as~dk 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFAT------ASGDK 87 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEE------ecCCc
Confidence 778899999999999999999999999999999999987765543 444445666777654 333332 24569
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAM 176 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 176 (338)
+|++||...++++.....-.+. ..+.|+|++++++.++.|..|...|.|+.+.....+... ...++|+.++.++..-.
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEec
Confidence 9999999999998877644444 457899999999999999999999998877655444322 23467777777777777
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
.-|.|.|...... .|+ ..+..|+....|+.|+|+|+|+++|+.|..+.+||...- ++...+.++.-+|..++||
T Consensus 167 GlG~v~ILsypsL--kpv--~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 167 GLGCVEILSYPSL--KPV--QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--ICERCISRLDWPVRTLSFS 240 (313)
T ss_pred CCceEEEEecccc--ccc--cccccCCcceEEEEECCCCceEeeccccceeeccChhHh--hhheeeccccCceEEEEec
Confidence 7799998764422 232 234578888999999999999999999999999998654 3434445666788999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 257 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 257 ~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.||++||+||+|-.|-|=++.+|..+..++ +.++-..|+|||...+||.+.
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEe
Confidence 999999999999999999999998887775 678899999999999999874
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=240.32 Aligned_cols=249 Identities=22% Similarity=0.377 Sum_probs=207.5
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEc-CCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDI-VSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
.+...+.+|...|+.++|+|+++++++|+.|++|||||+ ..++.++++.+|...+.+++|++.+..++.+ +.+
T Consensus 194 ~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sg------s~D 267 (456)
T KOG0266|consen 194 NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSG------SDD 267 (456)
T ss_pred hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEe------cCC
Confidence 356677899999999999999999999999999999999 5668999999999999999999888444433 345
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc--eeeeeeecCc----cEEEEcCCCC
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGR----PTVAFDQQGL 170 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~--~~~~~~~~~~----~~~~~~~~~~ 170 (338)
+++|+|++.++++.+.+.+|.+.|++++|++++++|++++.|+.|++||+.++. +.+.+..... ..+.|+|++.
T Consensus 268 ~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 268 GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 899999999999999999999999999999999999999999999999999998 4455544332 3478999999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCC---ceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA---EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
++++++.|+.+++||++..... ....+|.. .+....+++.++++++++.|+.|++|+..++.....+..+. .
T Consensus 348 ~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~ 422 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSGKSV----GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-K 422 (456)
T ss_pred EEEEecCCCeEEEEEccCCcce----eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-C
Confidence 9999999999999998864431 11223333 34445567889999999999999999998876665444443 6
Q ss_pred CCCeeEEECCCCCEEEEEc--CCCcEEEEECC
Q 019603 248 NTNTEATFTPDGQYVVSGS--GDGTLHAWNIN 277 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs--~Dg~i~vWd~~ 277 (338)
..+..+.++|...++++++ .|+.+++|...
T Consensus 423 ~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 423 AAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 6788899999999999998 79999999875
No 48
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=4.4e-31 Score=217.44 Aligned_cols=269 Identities=19% Similarity=0.360 Sum_probs=208.5
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
-..+..|++++.+.+|+|||.+++|||.|.+|||.|++.- +.... +..+... ++
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildverm--laks~--------------~~em~~~---------~~- 158 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERM--LAKSK--------------PKEMISG---------DT- 158 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhh--hhhcc--------------hhhhccC---------Cc-
Confidence 3456799999999999999999999999999999998621 10000 0000000 00
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee---eeee-ecCccEEEEcCCCCEEEEE
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ---GILR-LRGRPTVAFDQQGLVFAVA 175 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~ 175 (338)
-.....++++-.|.+.|+++.|+|....|+|||.|++||+||..+.... ++++ .+...+++|+|.|.++++|
T Consensus 159 ----qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg 234 (430)
T KOG0640|consen 159 ----QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG 234 (430)
T ss_pred ----ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe
Confidence 0012357788889999999999999999999999999999998654322 2332 2334678999999999999
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
..-..+++||+.++++-.. .....+|+..|+++.|++.++..++++.||.|++||-.+++++..+..-.....+.++.|
T Consensus 235 TdHp~~rlYdv~T~Qcfvs-anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVS-ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCCceeEEeccceeEeee-cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence 9999999999987654100 011236788999999999999999999999999999888877765543333356888999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEeEe-------------------------------------------------e
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACW-------------------------------------------------N 286 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-------------------------------------------------~ 286 (338)
..+|+|++|.|.|..+++|.+.+++++..+ -
T Consensus 314 tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 314 TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence 999999999999999999999988765541 1
Q ss_pred CCCCceEEEEEcCCCceEEeecc--eEEEeeeCCC
Q 019603 287 GNIGVVACLKWAPRRAMFVAASS--VLSFWIPNPS 319 (338)
Q Consensus 287 ~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~~~~~ 319 (338)
+|.+.+.++..+|.++-|++||. ..++|...++
T Consensus 394 gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr~a 428 (430)
T KOG0640|consen 394 GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRRVA 428 (430)
T ss_pred CCCCCceEEEeCCCCCceeeecccceeeeeeeccc
Confidence 78999999999999999999985 5788965544
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=6e-29 Score=217.52 Aligned_cols=300 Identities=13% Similarity=0.228 Sum_probs=236.5
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe-eEeEE-eecccCeeeEEEeecCCeeEEecCccCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK-LIKTT-YHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
..+....|.+|..+++-..|+|.|-|++||..-|+|||||..... .++.. ..-..++.-++|+++...+.....
T Consensus 48 ~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGE---- 123 (603)
T KOG0318|consen 48 NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGE---- 123 (603)
T ss_pred CccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEec----
Confidence 344466889999999999999999999999999999999997644 34432 222345667788877777664432
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCC
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGL 170 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~ 170 (338)
+-++-.+.+-.++|..+..+.||...|+++.|-|... .++|||.|++|-+|+-.--+...++..|.. .++.++|||.
T Consensus 124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS 203 (603)
T ss_pred CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC
Confidence 2234455555667888899999999999999999876 599999999999998654454445555544 5689999999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEE-ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC-C
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-N 248 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~ 248 (338)
++++++.||++.+||.++.+. ...+. ..+|.+.|.++.|+||+..+++++.|.+++|||..+++....+.+...- .
T Consensus 204 ~Fat~gsDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred eEEEecCCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 999999999999999887543 11111 2378999999999999999999999999999999999888777654331 1
Q ss_pred CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCCCCCC
Q 019603 249 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 323 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~~~~~ 323 (338)
.-..+.|- +..|+|.+-+|.|.+.+...+..+..+.||...|++|+.+|++.+|.+|| +.|.-|......+-+
T Consensus 282 qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 282 QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 12233443 67899999999999999999999999999999999999999999999998 567789766554443
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=239.13 Aligned_cols=294 Identities=18% Similarity=0.290 Sum_probs=207.0
Q ss_pred ccccceeec-cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccC----------eeeEEEeecC-Ce
Q 019603 16 SMAMAAIFS-DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG----------ADCVCFTHHP-SS 83 (338)
Q Consensus 16 ~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~ 83 (338)
.....+.+. .|+|.|+++.||+||+||||||.|+.|+||.+............... +..+..+... ..
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 333444555 89999999999999999999999999999998653221111110000 0000000000 00
Q ss_pred eEEecCccCCCCCceeEEEEc----cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec-
Q 019603 84 VICSTKYNLDSTGESLRYLSM----YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR- 158 (338)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~- 158 (338)
-.....-.. .. ..+ ++.. ..-+++..|+||++.|.+|+|+.+ .+|+|+|.|+|||+|++...+|+++|...
T Consensus 335 ~~s~~~~~~-~s-~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGS-QS-PCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHND 410 (712)
T ss_pred ccccccccc-CC-ccc-cCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCC
Confidence 000000000 00 111 1111 234567889999999999999964 68999999999999999999999998864
Q ss_pred CccEEEEcC-CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee
Q 019603 159 GRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 159 ~~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
...+++|+| |..+|++|+-|+++|||++...+ ......-..-|++++|.|+|++.++|+.+|.+++|+....+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCe-----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 457899999 56799999999999999976422 112223346699999999999999999999999999877665
Q ss_pred EEEeeeCCC------CCCCeeEEECCCCC-EEEEEcCCCcEEEEECCCCCeEeEeeCCCC--ceEEEEEcCCCceEEeec
Q 019603 238 RCGFSLEPS------PNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 238 ~~~~~~~~~------~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~l~s~s 308 (338)
...+....+ ...|+.+-|.|... -|+..+.|..|||+|.++.+++..|+|+.. .=..-.|+.||+++++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 554443322 13688888887554 366678899999999998899999997653 335688999999999998
Q ss_pred c--eEEEeeeCC
Q 019603 309 S--VLSFWIPNP 318 (338)
Q Consensus 309 ~--~~~iw~~~~ 318 (338)
. .+.||..+.
T Consensus 566 eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 566 EDSWVYIWKNDS 577 (712)
T ss_pred cCceEEEEeCCC
Confidence 5 488997643
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8.3e-32 Score=228.76 Aligned_cols=246 Identities=16% Similarity=0.265 Sum_probs=205.4
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
.+..|..+|.++.|+++|.+++||+.||.||+|+..-........++...+.+++|++..+..+.+ +.+++|++
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~------SdDg~iki 206 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTC------SDDGTIKI 206 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEe------cCCCeEEE
Confidence 456899999999999999999999999999999986443322334455789999999866655543 45699999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEEEEcCC
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg 179 (338)
||....+....+.||.--|.+++|+|....|+|||.|..|++||.|+++|+.++..+...+ +.|++++..|++++.|.
T Consensus 207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 9999888888899999999999999999999999999999999999999988887776554 67999999999999999
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
.+++||+|+.+. .+...+|...++++.|+|-.+ .+.+++.|+.+..|.+...+.+. .....|...|.+++|+|=
T Consensus 287 ~~kv~DiR~mkE----l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~-~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 287 SCKVFDIRTMKE----LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG-EIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred eEEEEehhHhHH----HHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc-CCCcccccceeeeecccc
Confidence 999999995432 234457889999999999655 56678889999999876333322 122467788999999999
Q ss_pred CCEEEEEcCCCcEEEEECCC
Q 019603 259 GQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 259 ~~~l~sgs~Dg~i~vWd~~~ 278 (338)
|..|++|+.|.++++|....
T Consensus 362 Ghil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 362 GHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ceeEeecCCCcceeeeccCC
Confidence 99999999999999998764
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.6e-30 Score=209.96 Aligned_cols=245 Identities=18% Similarity=0.311 Sum_probs=200.9
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
++++|++.|..+.|.+|+..|+|+|.|++++.||.++|+..+....|..-++.+.-..-+..++++ .+.++++|+
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S-----gsdD~t~kl 159 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS-----GSDDGTLKL 159 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEe-----cCCCceEEE
Confidence 667999999999999999999999999999999999999988777776666665533233334433 256799999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEEEEcCC
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg 179 (338)
||++..+.++++. -+-+++++.|...+..+.||+.|+.|++||+|.+.+..++..+..++ +..++.|..+.+-+-|.
T Consensus 160 ~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 160 WDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred Eeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc
Confidence 9999988888764 45678999999999999999999999999999999887777665554 67889999999999999
Q ss_pred eEEEEeCCCCCCCC--CeeEEecCCCCc--eEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 180 AIKLFDSRSYDKGP--FDTFLVGGDTAE--VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 180 ~i~i~d~~~~~~~~--~~~~~~~~~~~~--i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
++++||+|.+.... +..+.-..|..+ ...+.|+|++..+-+++.|+.+++||..... ..|.+.+|...|.++.|
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gsvn~~~F 316 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR--ILYKLPGHYGSVNEVDF 316 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc--EEEEcCCcceeEEEeee
Confidence 99999998754322 222333334433 4467899999999999999999999986544 45677889999999999
Q ss_pred CCCCCEEEEEcCCCcEEEE
Q 019603 256 TPDGQYVVSGSGDGTLHAW 274 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vW 274 (338)
+|....|.+++.|++|++=
T Consensus 317 hp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 317 HPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cCCCcEEEEeccCceeEee
Confidence 9999999999999999873
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.2e-31 Score=228.82 Aligned_cols=250 Identities=17% Similarity=0.303 Sum_probs=205.1
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
+...+++|.+|..+|..++|+++|..++|+|.|+.+|+||.++|+++... .......|+.|.+++..++++. ..
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f-~~~~~~~cvkf~pd~~n~fl~G-----~s 320 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF-HLDKVPTCVKFHPDNQNIFLVG-----GS 320 (503)
T ss_pred CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE-ecCCCceeeecCCCCCcEEEEe-----cC
Confidence 45688999999999999999999999999999999999999999987654 3345677888888775555443 34
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeee---eecCccEEEEcCCCCEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL---RLRGRPTVAFDQQGLVF 172 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 172 (338)
++.|+.||+++++.++.+..|-+.|..+.|-+++++++|.|.|++++||+.+.+..++.+ ..+..+++...|++..+
T Consensus 321 d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~ 400 (503)
T KOG0282|consen 321 DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWF 400 (503)
T ss_pred CCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCee
Confidence 589999999999999999999999999999999999999999999999999877654433 34567889999999999
Q ss_pred EEEEcCCeEEEEeCCCCC-CCCCeeEEecCC--CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 173 AVAMEAGAIKLFDSRSYD-KGPFDTFLVGGD--TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~--~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
+..+-|+.|.+|.....- ...... ..|| .+.-+.|.|||||+++++|..+|.+.+||..+-+.+.. +..|...
T Consensus 401 ~aQs~dN~i~ifs~~~~~r~nkkK~--feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~--lkah~~~ 476 (503)
T KOG0282|consen 401 AAQSMDNYIAIFSTVPPFRLNKKKR--FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK--LKAHDQP 476 (503)
T ss_pred hhhccCceEEEEecccccccCHhhh--hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc--cccCCcc
Confidence 999999999999754211 001111 1233 33466789999999999999999999999877655543 3455678
Q ss_pred CeeEEECCCC-CEEEEEcCCCcEEEEE
Q 019603 250 NTEATFTPDG-QYVVSGSGDGTLHAWN 275 (338)
Q Consensus 250 ~~~~~fs~~~-~~l~sgs~Dg~i~vWd 275 (338)
++.+.|+|.. ..+||+|.||.|++|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 9999999975 5799999999999996
No 54
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=209.00 Aligned_cols=287 Identities=16% Similarity=0.256 Sum_probs=210.8
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC-----eeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA-----KLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
.++|++|+++|++++|++||++|+|++.|++|+||++..- ++++...... -.+.+.|+++-..++..- .
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~-----~ 152 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSV-----K 152 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEE-----c
Confidence 4577899999999999999999999999999999998542 2333222222 234567777665555432 2
Q ss_pred CCceeEEEEccC---CeE---------EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC--c
Q 019603 95 TGESLRYLSMYD---NRI---------LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--R 160 (338)
Q Consensus 95 ~~~~i~~~~~~~---~~~---------~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~ 160 (338)
.|.++++|.+.. |.. ...-+.|+-.|.++.....+++|+|+|.|.+|.+|+++ |+.+..+.... .
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 457788887642 221 11224578888888888888999999999999999998 77655554332 2
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCC----eeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC-
Q 019603 161 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF----DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG- 235 (338)
Q Consensus 161 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~- 235 (338)
...+.+|+|.++++++-.--+++|..--...+.+ ..+.+.||...|..++|+|+.+.+++.+.||..++||..-.
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 3478899999999998888899998532222222 23567799999999999999999999999999999986411
Q ss_pred ------eeEEEee--eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee-CCCCceEEEEEcCCCceEEe
Q 019603 236 ------EKRCGFS--LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 236 ------~~~~~~~--~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s 306 (338)
.....+. ++.......++..||+|+.||... ...++++..++++....++ .|.+.|.||+|+|+|+++|+
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 1111111 111112344899999999988654 4579999999988877774 79999999999999999999
Q ss_pred ecc-eEEEe
Q 019603 307 ASS-VLSFW 314 (338)
Q Consensus 307 ~s~-~~~iw 314 (338)
++. -+++.
T Consensus 391 cGdr~vrv~ 399 (420)
T KOG2096|consen 391 CGDRYVRVI 399 (420)
T ss_pred ecceeeeee
Confidence 984 46665
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.2e-31 Score=211.53 Aligned_cols=249 Identities=18% Similarity=0.350 Sum_probs=207.5
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
+-+|.||+|.|++..++.+....+|++.|-+.|+||..+|..+.++.+ .+-|..++|+.+...++.+. .++.+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltgg------~ekll 124 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTGG------QEKLL 124 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhccc------hHHHh
Confidence 568999999999999999999999999999999999999998887644 57788889988776665432 23678
Q ss_pred EEEEccCCe-EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEc
Q 019603 100 RYLSMYDNR-ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAME 177 (338)
Q Consensus 100 ~~~~~~~~~-~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 177 (338)
|++++...+ +...+.+|++.|..+.|....+.|+|++.|++||+||.+++...+.+.+.. ..++.++++|.++.++..
T Consensus 125 rvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g 204 (334)
T KOG0278|consen 125 RVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG 204 (334)
T ss_pred hhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC
Confidence 999987654 466789999999999999888999999999999999999999888777654 456888999998877665
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 257 (338)
+.|.+||.+++.. +..+ .-...|.+..++|+...+++++.|..++.||..+++.+..+ ..+|.++|.++.|+|
T Consensus 205 -ssV~Fwdaksf~~--lKs~---k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 205 -SSVKFWDAKSFGL--LKSY---KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSP 277 (334)
T ss_pred -ceeEEeccccccc--eeec---cCccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECC
Confidence 5789999876432 2222 22455888889999999999999999999999999877654 468889999999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeE
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEV 282 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~ 282 (338)
+|...++||+||+||+|+...++..
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999766543
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-29 Score=230.73 Aligned_cols=248 Identities=19% Similarity=0.333 Sum_probs=199.5
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
++-.|.+|.|+|.++.|+|++.+++|||+|.+|++|++.+.+++.++.+|.-.+..+.|++.-..++.+ +++.+
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA------SDDQT 116 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA------SDDQT 116 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEc------cCCCe
Confidence 455688999999999999999999999999999999999999999999998888888887655555543 45699
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECC---Cccee-e---------------------
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR---VNACQ-G--------------------- 153 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~---~~~~~-~--------------------- 153 (338)
||+|+..+++++..+.||...|.|..|+|....++|+|.|.+||+||+. .+... .
T Consensus 117 IrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da 196 (1202)
T KOG0292|consen 117 IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA 196 (1202)
T ss_pred EEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence 9999999999999999999999999999999999999999999999973 11100 0
Q ss_pred ----eeee--cCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcE
Q 019603 154 ----ILRL--RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 227 (338)
Q Consensus 154 ----~~~~--~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i 227 (338)
++.. .+.+-.+|+|.-.++++|+.|+.|++|.+...+. ...-...+|...|+++-|+|....|++.+.|+.|
T Consensus 197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--eeehhhhcccCCcceEEecCccceeEecCCCccE
Confidence 0111 1234478999999999999999999998754221 1112234788999999999999999999999999
Q ss_pred EEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 228 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
++||+...+.+..|+ +.......++-+|...+++.|. |+-+.||.+.
T Consensus 275 rVwDm~kRt~v~tfr--rendRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 275 RVWDMTKRTSVQTFR--RENDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred EEEecccccceeeee--ccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 999998776665554 3345677788888888877665 4456677765
No 57
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=9.5e-29 Score=228.61 Aligned_cols=248 Identities=15% Similarity=0.166 Sum_probs=175.0
Q ss_pred eeccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCe-------eEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 22 IFSDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAK-------LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
.+.+|.+.|++++|+| ++++|+|||.|++|++||+.++. .+..+.+|...+.++.|++....++.++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg----- 144 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA----- 144 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE-----
Confidence 5789999999999999 88999999999999999997652 3455667777888888877654444332
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEE
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFA 173 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
+.++++++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+++++....+..+...
T Consensus 145 s~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~------------ 212 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA------------ 212 (493)
T ss_pred eCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC------------
Confidence 33589999999999999999999999999999999999999999999999999987765444333211
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe----cCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT----TNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
....+.|.|++..+++++ .|+.|++||++................
T Consensus 213 -------------------------------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 213 -------------------------------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred -------------------------------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 011223344444443332 245566666543321111000111123
Q ss_pred CeeEEECCCCCEEEEEc-CCCcEEEEECCCCCeEeEeeC-CCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 250 NTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
+....|++++.+|++|+ .|+.|++||+.+++.+..+.. +...+.+++|.|....=+......++++..
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALT 331 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEEec
Confidence 44467899999999887 599999999999887776643 456788999999765444434444555433
No 58
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=197.51 Aligned_cols=205 Identities=20% Similarity=0.322 Sum_probs=172.5
Q ss_pred EEEeecCCccceEEEEEcCC-CCEEEEEECCCeEEEEECCCc---ceeeeee---ecCccEEEEcCCCCEEEEEEcCCeE
Q 019603 109 ILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVN---ACQGILR---LRGRPTVAFDQQGLVFAVAMEAGAI 181 (338)
Q Consensus 109 ~~~~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~dg~i 181 (338)
.++.+++|+++|..++|+|. |..|+|||.|+.||+|++..+ .|..++. ......++++|.|.++++|+-|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46778999999999999998 889999999999999998742 3433332 2234568999999999999999999
Q ss_pred EEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccC-CeeEEEeeeCCCCCCCeeEEECCCCC
Q 019603 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQ 260 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~fs~~~~ 260 (338)
-||--....... .-.++||..+|-+++|+++|++++++++|+.|.||.... ++..+.-.+.+|...|..+.|+|...
T Consensus 86 ~Iw~k~~~efec--v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 86 VIWKKEDGEFEC--VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEeecCCCceeE--EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 999644322111 224579999999999999999999999999999998763 44555566778888899999999999
Q ss_pred EEEEEcCCCcEEEEECC---CCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 261 YVVSGSGDGTLHAWNIN---TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~---~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
+|+|+|-|.+|++|.-. ...+++++.+|...|++++|+|.|..|++++ .+++||.
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 99999999999999876 4578999999999999999999999999998 5799997
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-28 Score=199.06 Aligned_cols=282 Identities=13% Similarity=0.241 Sum_probs=224.4
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
..++||..+++.+.++.+|++|+||+.|.++.+|-..+|..+.++.+|...+.++........++.+ +.+.+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTG------SAD~t~k 77 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITG------SADQTAK 77 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeec------cccceeE
Confidence 4678999999999999999999999999999999988999999999999999998887776666643 4468999
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEE-----CCCeEEEEECCC-------cceeeeeeecC--ccEEEEc
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGS-----LDHSVRIWDLRV-------NACQGILRLRG--RPTVAFD 166 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs-----~D~~I~iWd~~~-------~~~~~~~~~~~--~~~~~~~ 166 (338)
+||+.+|+++..++ -...|..+.|++++++++.+. .-+.|.++|++. +++...+..+. .....|.
T Consensus 78 LWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 78 LWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 99999999988876 567899999999998876554 447899999983 33333333322 2346799
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
|.+..+++|.+||.|.+||.++... + .....-|...|+.++++|+..++++++.|.+.++||..+-+.+..|...
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~--~-v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-- 231 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKE--L-VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-- 231 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCce--e-eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec--
Confidence 9999999999999999999987432 0 1112246678999999999999999999999999999988888777655
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEE--------------EECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc--e
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHA--------------WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--V 310 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~v--------------Wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~ 310 (338)
.++++++++|....++.|+.-...-| +++--.+.+..+++|-|+|++|+|||+|...++|+. .
T Consensus 232 -~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 232 -RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred -ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 46889999998888887765332222 222222345667899999999999999999999984 4
Q ss_pred EEEee
Q 019603 311 LSFWI 315 (338)
Q Consensus 311 ~~iw~ 315 (338)
+++.-
T Consensus 311 VR~h~ 315 (327)
T KOG0643|consen 311 VRLHH 315 (327)
T ss_pred EEEEE
Confidence 66653
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.6e-29 Score=210.53 Aligned_cols=254 Identities=17% Similarity=0.290 Sum_probs=208.8
Q ss_pred HHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 13 TVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 13 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
++.+.++..++.||...|..+++|+--.||++++.|+.||.||++..+.++.+++|-++|.++...+.-+.++.+
T Consensus 179 Dlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~----- 253 (460)
T KOG0285|consen 179 DLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTG----- 253 (460)
T ss_pred EcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEec-----
Confidence 456667788999999999999999999999999999999999999999999999999999988876554444432
Q ss_pred CCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCC
Q 019603 93 DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGL 170 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~ 170 (338)
+.+.++|+||+++...+..+.||++.|.++.+.|.+..++|||.|++|++||++.++...++..+.. ..++.+|...
T Consensus 254 -grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~ 332 (460)
T KOG0285|consen 254 -GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN 332 (460)
T ss_pred -CCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh
Confidence 3458999999999999999999999999999999999999999999999999999987766666554 4577889999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC----
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS---- 246 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~---- 246 (338)
.|++++.| .++-|++... .+... +.+|+..|+.+....|+ ++++|+.++.+.+||..+|......+....
T Consensus 333 ~fASas~d-nik~w~~p~g---~f~~n-lsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl 406 (460)
T KOG0285|consen 333 LFASASPD-NIKQWKLPEG---EFLQN-LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL 406 (460)
T ss_pred hhhccCCc-cceeccCCcc---chhhc-cccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcc
Confidence 99998887 5677876432 22222 45788889999888665 578888889999999988865443322211
Q ss_pred --CCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 247 --PNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 247 --~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
...+...+|...|..|+||..|++|++|.-.+
T Consensus 407 ~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 407 ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 24567889999999999999999999998764
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.7e-27 Score=206.32 Aligned_cols=245 Identities=25% Similarity=0.402 Sum_probs=201.5
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
....+.+|...+..+.|+|++++|++++.|+.|++||+.+++.+..+..+...+.++.+.+....++.+ ..++.
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~ 116 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS------SRDKT 116 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe------cCCCe
Confidence 456778999999999999999999999999999999999877776666666677777777653333322 12488
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcCCCCEEEEEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAM 176 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 176 (338)
+++|++.+++....+..|...|.++.|+|+++++++++.|+.|++||++.++....+..+. ...+.++|++..+++++
T Consensus 117 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred EEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence 9999999899999999999999999999998899998889999999999887766666544 34578999998899999
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
.++.+++||.+.... ......+...+.++.|+|++.++++++.++.+++|+..++.....+. .+...+..++|+
T Consensus 197 ~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~ 270 (289)
T cd00200 197 SDGTIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWS 270 (289)
T ss_pred CCCcEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEEC
Confidence 999999999875321 11222456689999999998888777779999999998776655444 566679999999
Q ss_pred CCCCEEEEEcCCCcEEEEE
Q 019603 257 PDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 257 ~~~~~l~sgs~Dg~i~vWd 275 (338)
|++++|++++.||.|++|+
T Consensus 271 ~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 271 PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCEEEEecCCCeEEecC
Confidence 9999999999999999996
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=5.6e-28 Score=224.00 Aligned_cols=275 Identities=20% Similarity=0.342 Sum_probs=225.1
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE-EeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT-TYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
|...+.+..|+ +.++++++.|.+|++||..++..+.. +.+|..++..+.+......++.+ +.+.++++||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsg------S~D~t~rvWd~ 278 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSG------STDKTERVWDC 278 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEE------ecCCcEEeEec
Confidence 56778888898 77899999999999999999998887 88999999999887633333332 45699999999
Q ss_pred cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEE
Q 019603 105 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 184 (338)
.++++...+.+|++.|.++... ...+++||.|.+|++||+.++.++.++..+..++.++.-++.++++|+.|++|++|
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVW 356 (537)
T ss_pred CCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEE
Confidence 9999999999999999988775 45789999999999999999999988887766666666668999999999999999
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC-eeEEEeeeCCCCCCCeeEEECCCCCEEE
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVV 263 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~fs~~~~~l~ 263 (338)
|.++.++ ...+.+|+..|.++.+.+. .+++.++.|+.|++||+.+. +++ ..+.+|...+..+ ...+++|+
T Consensus 357 ~~~~~~c----l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~--~tl~~h~~~v~~l--~~~~~~Lv 427 (537)
T KOG0274|consen 357 DPRTGKC----LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI--HTLQGHTSLVSSL--LLRDNFLV 427 (537)
T ss_pred Ehhhcee----eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh--hhhcCCccccccc--ccccceeE
Confidence 9886543 2234579999999988665 78999999999999999877 444 3445555555443 34678999
Q ss_pred EEcCCCcEEEEECCCCCeEeEeeC-CCCceEEEEEcCCCceEEeec-ceEEEeeeCCCC
Q 019603 264 SGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS 320 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s-~~~~iw~~~~~~ 320 (338)
+++.|++|++||..++++++.+++ |.+.|.++.+. +..+++++. +++++|..+...
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence 999999999999999999999998 78999999987 333444443 689999776443
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.2e-28 Score=230.42 Aligned_cols=273 Identities=20% Similarity=0.307 Sum_probs=206.9
Q ss_pred CHHHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecC
Q 019603 10 DDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 10 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
..++++-..+..+...|.+.|+|++|+|||++|++||+|+.|.||+.... .. ...+.
T Consensus 52 ~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~--------------------~~~fg-- 108 (942)
T KOG0973|consen 52 EEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GS--------------------GTVFG-- 108 (942)
T ss_pred hhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CC--------------------ccccc--
Confidence 33444446677888999999999999999999999999999999987531 00 00000
Q ss_pred ccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcC
Q 019603 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQ 167 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~ 167 (338)
++|+ .-+.+..+.+..+.+|...|..+.|+|++.+++|+|.|++|.|||.++.++.+++..|... -+.|+|
T Consensus 109 ----s~g~---~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP 181 (942)
T KOG0973|consen 109 ----STGG---AKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP 181 (942)
T ss_pred ----cccc---ccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC
Confidence 1011 1122344577889999999999999999999999999999999999999888888877654 489999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCC-----CCCeeEEecCCCCceEEEEEcCCCCEEEEEecC----CcEEEEEccCCeeE
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDK-----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGEKR 238 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d----~~i~i~~~~~~~~~ 238 (338)
-|.+|++.+.|+++++|+...+.. .+++. .........+.|||||+++++...- ..+.|++..+ ..
T Consensus 182 ~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~---~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t--Wk 256 (942)
T KOG0973|consen 182 IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE---SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT--WK 256 (942)
T ss_pred ccCeeeeecCCceEEEEEcccceeeEeeccchhh---CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC--ce
Confidence 999999999999999999554321 12211 1224457789999999999876542 3578887643 34
Q ss_pred EEeeeCCCCCCCeeEEECCC-----CC------------EEEEEcCCCcEEEEECCCCCeEeEe-eCCCCceEEEEEcCC
Q 019603 239 CGFSLEPSPNTNTEATFTPD-----GQ------------YVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPR 300 (338)
Q Consensus 239 ~~~~~~~~~~~~~~~~fs~~-----~~------------~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~l~~~p~ 300 (338)
....+.+|..+++.++|+|. .+ .+|+||.|++|-||+....+++... .-...+|..++|+||
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd 336 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD 336 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCC
Confidence 45566788889999999972 11 5788999999999999877765543 234679999999999
Q ss_pred CceEEeec--ceEEEeeeC
Q 019603 301 RAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 301 ~~~l~s~s--~~~~iw~~~ 317 (338)
|..|.++| +++.+....
T Consensus 337 G~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 337 GFSLFACSLDGTVALIHFE 355 (942)
T ss_pred CCeEEEEecCCeEEEEEcc
Confidence 99999997 677776644
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.8e-28 Score=204.89 Aligned_cols=251 Identities=21% Similarity=0.297 Sum_probs=199.7
Q ss_pred cccceeeccCCcceeEEEeecCCC---EEEEeeCCCcEEEEEcCCCee----EeEEeecccCeeeEEEeecCCeeEEecC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDD---LLVTASDDDSVRLYDIVSAKL----IKTTYHKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~---~l~s~s~D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
-+.+.++.||+++|.+++|...+. .++|+|.|.++++|..+.+.. ++...+|...|.+++...++.....+
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg-- 211 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG-- 211 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee--
Confidence 345668899999999998875443 599999999999999877653 22234677788888877666655433
Q ss_pred ccCCCCCceeEEEEccC-------------------------CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEE
Q 019603 90 YNLDSTGESLRYLSMYD-------------------------NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 144 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~-------------------------~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iW 144 (338)
+-+.++++|+... +.++-++.||+.+|.++.|++ ...++|+|+|++|+.|
T Consensus 212 ----S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~W 286 (423)
T KOG0313|consen 212 ----SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVW 286 (423)
T ss_pred ----cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEE
Confidence 2348899999211 124567899999999999998 6789999999999999
Q ss_pred ECCCcceeeeeeec-CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCE-EEEEe
Q 019603 145 DLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTT 222 (338)
Q Consensus 145 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~-i~~~~ 222 (338)
|+.++.+...+... .-.++...|...++++|+.|..+++||.|... +....+.+.+|...|..+.|+|...+ +++++
T Consensus 287 Dletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 287 DLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred EeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 99999887655543 33567788888999999999999999999864 44555666789999999999998775 66788
Q ss_pred cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 223 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 223 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.|+++++||.++.. ...|.+.+|...+.++.|+ ++.+++|||.|.+|+|+.-.
T Consensus 366 ~D~t~klWDvRS~k-~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTK-APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCeEEEEEeccCC-CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 89999999987653 3567888888899999997 57799999999999998764
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=7.3e-28 Score=223.21 Aligned_cols=256 Identities=17% Similarity=0.267 Sum_probs=206.6
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
..+.....|.||.+.|++++|...+.+|++||.|+++++||..+|.+...+.+|...+.++.. .+..... .+
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~s------gs 308 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVS------GS 308 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEee------cc
Confidence 344445558999999999999988899999999999999999999999998887776666543 2222221 23
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCC-CEEE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG-LVFA 173 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 173 (338)
-+.++++|++.++.++..+.+|.+.|.++... +.++++|+.|++|++||+.+++|.+.+..|...+.++-.++ ..+.
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~ 386 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLL 386 (537)
T ss_pred CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEE
Confidence 45899999999999999999999999999987 78999999999999999999999999998877766665666 8999
Q ss_pred EEEcCCeEEEEeCCCC-CCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 174 VAMEAGAIKLFDSRSY-DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
+|+.|+.|++||++.. .+. ....+|..-+..+.+ .++.+++++.|+.|++||..+++....+... +...+..
T Consensus 387 Sgs~D~~IkvWdl~~~~~c~----~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~ 459 (537)
T KOG0274|consen 387 SGSLDTTIKVWDLRTKRKCI----HTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSA 459 (537)
T ss_pred eeeeccceEeecCCchhhhh----hhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEE
Confidence 9999999999999876 331 223355555654433 6788999999999999999999887766554 3345665
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCC
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 289 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~ 289 (338)
+.+. ...+++++.||++++||+++++....+-.+.
T Consensus 460 l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 460 LALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred eecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 5554 5788899999999999999999888774444
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-28 Score=195.41 Aligned_cols=276 Identities=20% Similarity=0.308 Sum_probs=207.6
Q ss_pred eEEEeec--CCCEEEEeeC------CCcEEEEEcCCCeeEeEEe--ecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 31 NSLDFHR--KDDLLVTASD------DDSVRLYDIVSAKLIKTTY--HKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 31 ~~l~~s~--~~~~l~s~s~------D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
+++.||| ++++++.++. .|++-|-++..++.+.... ...-+..-++|+.....++.+ ..+++++|
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~-----a~GDGSLr 86 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIA-----ASGDGSLR 86 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEE-----EecCceEE
Confidence 7899999 4554443332 5778888886443332221 122344456777665544433 24569999
Q ss_pred EEEccC-CeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCC-CCEEEEE
Q 019603 101 YLSMYD-NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQ-GLVFAVA 175 (338)
Q Consensus 101 ~~~~~~-~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~ 175 (338)
+||+.- ..++..++.|...|.++.|.+.. +.++++|+|++||+||...++.+.++..+... ...|+|. +.+++++
T Consensus 87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred EeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 999643 45788999999999999999865 46888899999999999887777776654433 2578884 5699999
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
+.|+.+++||+|... .. +.+..|..++.++.|+.-. ..+++++.|+.|++||++.-+ ...+++.+|.-.|..+.
T Consensus 167 Sgd~~l~lwdvr~~g--k~--~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk 241 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPG--KF--MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVK 241 (311)
T ss_pred cCCceEEEEEecCCC--ce--eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-ccceeecCCceEEEEEe
Confidence 999999999998643 22 2355678899999999754 567788899999999987543 34667778877889999
Q ss_pred ECCCC-CEEEEEcCCCcEEEEECCCC-CeEeEeeCCCCceEEEEEcCC-CceEEeec--ceEEEeee
Q 019603 255 FTPDG-QYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPR-RAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 255 fs~~~-~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s--~~~~iw~~ 316 (338)
|||.- ..|+|++-|-++||||...+ ..+.+.+.|...|..+.||+- ..++|+++ +.+.||.+
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99975 57899999999999999854 567788899999999999985 45788876 78999964
No 67
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.1e-29 Score=210.32 Aligned_cols=258 Identities=17% Similarity=0.325 Sum_probs=205.0
Q ss_pred ceeeccCCcceeEEEeecCC-CEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecC---------
Q 019603 20 AAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK--------- 89 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 89 (338)
+..|.||.+.|.+++=+|.. ..++||+.||.|+|||+....++.++..|...|.-+++.. ...+.++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeecc
Confidence 45678999999999999977 6899999999999999999888888888776666555543 111111100
Q ss_pred -------------cc---------CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEEC
Q 019603 90 -------------YN---------LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDL 146 (338)
Q Consensus 90 -------------~~---------~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~ 146 (338)
.+ +...|..|-+||.....+++.+.--.+.|.++.|+|... .|++|+.|+.|.+||+
T Consensus 138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 00 123455688999888888888888889999999999864 6889999999999999
Q ss_pred CCcceeeeeeec-CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC
Q 019603 147 RVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 225 (338)
Q Consensus 147 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~ 225 (338)
|.+..++.+... ..+.++|+|.+..|.+|.+|..+..||+|.... +...+ -+|...|.++.|||.|+.+++++.|.
T Consensus 218 R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-p~~v~--~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 218 RQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-PLNVH--KDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred ccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcc-cchhh--cccceeEEEeccCCCcchhccccccc
Confidence 999876544433 345699999999999999999999999997653 33222 36788899999999999999999999
Q ss_pred cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Q 019603 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 282 (338)
Q Consensus 226 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~ 282 (338)
.|+||....++....|...+. ..|.++.||.|.+|++|||.|+.||+|.....+.+
T Consensus 295 sIRIf~~~~~~SRdiYhtkRM-q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTKRM-QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred eEEEeecCCCcchhhhhHhhh-heeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 999999988876655544443 46899999999999999999999999998754443
No 68
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=5.9e-27 Score=196.80 Aligned_cols=287 Identities=15% Similarity=0.233 Sum_probs=228.8
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
...|..|+++|.+++.+|+.++++|||.|...-||+..+|..+..+.+|+-.|.++.|++++..+..+.. ++.+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdm------sG~v 130 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDM------SGKV 130 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCC------CccE
Confidence 3478899999999999999999999999999999999999988888899999999999998876654422 3789
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEEEEc
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAME 177 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 177 (338)
++|...++.....+.+--+.+.=+.|+|.+..|+.|+.||.+.+|.+.++...+++..+..++ -.|.|+|+.+++++.
T Consensus 131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 999999998887776556667778999999999999999999999998866666676665544 468899999999999
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee------CCCC---C
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL------EPSP---N 248 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~------~~~~---~ 248 (338)
||+|++||.++.. |+ ......+.....++.++..+..++.|..++.+++.+..+|+.+..... ..+. .
T Consensus 211 dgti~~Wn~ktg~--p~-~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQ--PL-HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred CceEEEEecCCCc--ee-EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 9999999998753 22 122223345677788888899999999999999998888877665442 1111 2
Q ss_pred CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 249 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
.+..+.+|..=++.|+|+-||+|-|||+.+.+....+ .|...|..|.|-+ ..+|++++ ++++.|...
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDAR 356 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeecc
Confidence 3444556667788999999999999999986655444 5777899999999 44555554 678899755
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-27 Score=194.38 Aligned_cols=246 Identities=20% Similarity=0.325 Sum_probs=194.0
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCC--eeEEecCccCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS--SVICSTKYNLDS 94 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 94 (338)
+.++-.|..|.++|++|+.+ +.+++|||.|.+|+|||+...+.+..+..|...++++.|.+..+ .++. .+
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS------~s 104 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLS------GS 104 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheee------ec
Confidence 44577889999999999987 89999999999999999999988888888888888888876543 3333 24
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEEE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFA 173 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 173 (338)
.++.|-+|+..+.+++.++++|++.|+.++++|.++.-+|.|.|+.+++||+-.++.-.+..+... ..+.|+|.|.+++
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV 184 (362)
T ss_pred CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence 568999999999999999999999999999999999999999999999999988776555555433 3589999999888
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeE
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 253 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 253 (338)
++..+ .|-+|.+..... +........+.++.|- ++..+++|+.+..|.+||..+... .+.+..|.+.|..+
T Consensus 185 v~~~~-~i~i~q~d~A~v-----~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~--~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 185 VSGRN-KIDIYQLDNASV-----FREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP--LTEFLAHENRVKDI 255 (362)
T ss_pred EEecc-EEEEEecccHhH-----hhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcc--ceeeecchhheeee
Confidence 88765 677887653211 1000112335555554 466789999999999999876543 34556777778877
Q ss_pred EE--CCCCCEEEEEcCCCcEEEEECCCC
Q 019603 254 TF--TPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 254 ~f--s~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
.+ .|++.||+|+|+||.|+|||++..
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcccc
Confidence 63 577899999999999999999753
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-27 Score=191.98 Aligned_cols=253 Identities=17% Similarity=0.212 Sum_probs=194.6
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
..+-+|+||.|.|++++.+.+.++|+|||.|.+++|||+++|+++.++.. ..+|..+.|++.+...+..+.. ..+-.+
T Consensus 43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~-~mg~~~ 120 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDK-QMGYTC 120 (327)
T ss_pred ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehh-hcCcce
Confidence 35678999999999999999999999999999999999999999877644 3567778888877766655432 223346
Q ss_pred eeEEEEcc-------CCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-eeeeeecC--ccEEEEcC
Q 019603 98 SLRYLSMY-------DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRG--RPTVAFDQ 167 (338)
Q Consensus 98 ~i~~~~~~-------~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~~--~~~~~~~~ 167 (338)
.+.++++. +.++...+..+...++.+-|.|-+++|++|..||.|.+||+++++. +...+.+. ...+.+++
T Consensus 121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR 200 (327)
T ss_pred EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC
Confidence 78888887 3455677778889999999999999999999999999999999753 44444443 34588999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEE--EccCCeeEE------
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL--DAYGGEKRC------ 239 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~--~~~~~~~~~------ 239 (338)
+..++++++.|.+.++||.++... +.++. ...++++.+++|-...++.++.....-+= ..+.|+...
T Consensus 201 d~T~FiT~s~Dttakl~D~~tl~v--~Kty~---te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 201 DRTYFITGSKDTTAKLVDVRTLEV--LKTYT---TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred CcceEEecccCccceeeeccceee--EEEee---ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence 999999999999999999886432 22232 34578999999987777776654433222 112222111
Q ss_pred ----EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 240 ----GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 240 ----~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.-+..+|.+++++++|+|+|+..+||++||.||+.-..
T Consensus 276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 11446788999999999999999999999999998654
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.5e-27 Score=201.13 Aligned_cols=297 Identities=16% Similarity=0.226 Sum_probs=224.2
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEE------------------eecccCeeeEEEeecC
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT------------------YHKKHGADCVCFTHHP 81 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 81 (338)
...+..|.-+|.+|.++|++++.++++.|++|.=|+..+|+..+-+ ..|...+.+++.+.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5677899999999999999999999999999999999888733111 0222345566777666
Q ss_pred CeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc
Q 019603 82 SSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP 161 (338)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~ 161 (338)
.+++.+ .-+..+.+|+..+.+.++.+++|.+.|.+++|-.....++|+|.|++|++|++.....+.++..|...
T Consensus 215 kylatg------g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 215 KYLATG------GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred cEEEec------CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 665543 33578999999999999999999999999999988889999999999999999877766666666655
Q ss_pred EEEEcC--CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEE
Q 019603 162 TVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 239 (338)
Q Consensus 162 ~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~ 239 (338)
+..++. .+..+.+|..|+++++|++.... .....++...+-|++|-.+ ..+++|+.+|.|.+|++...+.++
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCcee
Confidence 555543 45566777799999999984321 1223456777888888754 468999999999999987766665
Q ss_pred EeeeCC----------CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC----CeEeEeeCCCCceEEEEEcCCCceEE
Q 019603 240 GFSLEP----------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 240 ~~~~~~----------~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~----~~~~~~~~h~~~v~~l~~~p~~~~l~ 305 (338)
..+... ++.++++++..|...+++|||.+|.||+|.+.++ .++..+. -.|.|++|+|++++..++
T Consensus 363 ~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 363 TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIV 441 (479)
T ss_pred EeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEE
Confidence 544321 1238899999999999999999999999999876 3344444 569999999999999777
Q ss_pred eecc----eEEEeeeCCCCCCCCCCCCC
Q 019603 306 AASS----VLSFWIPNPSSNSTDESTDP 329 (338)
Q Consensus 306 s~s~----~~~iw~~~~~~~~~~~~~~~ 329 (338)
+|-+ ..+.|..-...+.......+
T Consensus 442 agiGkEhRlGRW~~~k~~~~~~~v~~~~ 469 (479)
T KOG0299|consen 442 AGIGKEHRLGRWWCLKSGKNSGVVSPRR 469 (479)
T ss_pred EecccccccceeeEeecccccceeeeee
Confidence 7753 24555433334443333333
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=204.54 Aligned_cols=251 Identities=16% Similarity=0.349 Sum_probs=205.1
Q ss_pred HHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEe-ecccCeeeEEEeecCCeeEEecCc
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTY-HKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
++.+ |+..-.|+.|..+|.|+.|+.|..+|+||+.||.|++|.+++|.|++... .|..++.+++|+.+++.++.++
T Consensus 249 KDLk-YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s-- 325 (508)
T KOG0275|consen 249 KDLK-YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS-- 325 (508)
T ss_pred hhhh-hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc--
Confidence 3443 44555678999999999999999999999999999999999999988765 6778999999999988877543
Q ss_pred cCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc----cEEEEc
Q 019603 91 NLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----PTVAFD 166 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~----~~~~~~ 166 (338)
-+.++|+--+.+|++++.++||+..|+...|+++|..++|+|.||+|++|+.++.+|..+++..+. ..+-.-
T Consensus 326 ----fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 326 ----FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred ----ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 348899999999999999999999999999999999999999999999999999999988886543 223334
Q ss_pred C-CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC--CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 167 Q-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 167 ~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
| +...++++...+++.|.++.. ++......| +.+...++..+|.|+++...+.|+.++.|...+|.....+..
T Consensus 402 PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred CCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec
Confidence 4 445788888888998887542 111111111 234456678999999999999999999999988876654443
Q ss_pred CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 244 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
|...+..++-+|....|||-++||.+++|.
T Consensus 478 --hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 478 --HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --ccccccccccCcccchhhhhcccchhhhcC
Confidence 445677889999999999999999999995
No 73
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=7e-27 Score=210.59 Aligned_cols=287 Identities=16% Similarity=0.248 Sum_probs=221.4
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE--EeecccCeee-EEEeecCCe-eEEecCcc
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT--TYHKKHGADC-VCFTHHPSS-VICSTKYN 91 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 91 (338)
.|+.-..+.||+.-|..+++.+ +..++++|.|+++++|+-..+..+.+ ++.+..-+.. .++...... ++.+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g---- 77 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG---- 77 (745)
T ss_pred cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEee----
Confidence 5788889999999999998875 44899999999999999876655442 2322222222 444432222 2222
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCC
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQG 169 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~ 169 (338)
+.+..+-+|...+.++..+++||+..|.+++...++. ++|||+|.++++|-. +++....+.|.... +..-|.+
T Consensus 78 --~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 78 --GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN 152 (745)
T ss_pred --cccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC
Confidence 3347888999999999999999999999999877766 999999999999954 55555555555444 3344555
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
.+++|+.|..|++|..... ...+.+|+..|..+++-|++. +++++.|+.|+.|++ +|+.+ ++.++|.+.
T Consensus 153 -~~vTgsaDKtIklWk~~~~------l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l--~~~~ghtn~ 221 (745)
T KOG0301|consen 153 -TYVTGSADKTIKLWKGGTL------LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVL--LEMHGHTNF 221 (745)
T ss_pred -cEEeccCcceeeeccCCch------hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCcee--eeeeccceE
Confidence 7899999999999975431 123457999999999988754 899999999999998 56554 467788888
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-ceEEEeeeCCCCCCCCC
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE 325 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw~~~~~~~~~~~ 325 (338)
+.+++..++++.++|+|+|+++|+|+.. .+++.+....-.||++.+-++|..++.+| +.++||-..+.+.+.+.
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As~e 296 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKASDE 296 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccCCHH
Confidence 9999988899999999999999999998 67777776667999999999999888887 67999987766665543
No 74
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=5.6e-26 Score=224.87 Aligned_cols=243 Identities=13% Similarity=0.179 Sum_probs=190.1
Q ss_pred CCcceeEEEeecC-CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeec-CCeeEEecCccCCCCCceeEEEE
Q 019603 26 FGGKINSLDFHRK-DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHH-PSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 26 h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
+...|.+++|+|. +.+|++++.|++|++||+.+++.+..+..|...+.++.|++. +..++++ +.++++++||
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg------s~Dg~v~iWd 604 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG------SDDGSVKLWS 604 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE------cCCCEEEEEE
Confidence 4568999999974 789999999999999999999988888888888999988753 4444433 3458999999
Q ss_pred ccCCeEEEeecCCccceEEEEEc-CCCCEEEEEECCCeEEEEECCCcc-eeeeeeecCc--cEEEEcCCCCEEEEEEcCC
Q 019603 104 MYDNRILRYFKGHKERVISLCMS-PVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGR--PTVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 104 ~~~~~~~~~~~~H~~~V~~l~~~-~~~~~l~Sgs~D~~I~iWd~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg 179 (338)
+.++..+..+..| ..|.++.|. +++.+|++|+.|++|++||++... ....+..+.. ..+.|. ++..+++++.|+
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC
Confidence 9999888888755 689999995 568899999999999999998765 3334444433 345665 677899999999
Q ss_pred eEEEEeCCCCCCC--CCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee-----------CCC
Q 019603 180 AIKLFDSRSYDKG--PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----------EPS 246 (338)
Q Consensus 180 ~i~i~d~~~~~~~--~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~-----------~~~ 246 (338)
.|++||++..... ......+.+|...+..+.|+|++.++++++.|+.+++|+.........+.. ..+
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~ 762 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA 762 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC
Confidence 9999998753211 011234557888899999999999999999999999999765543322221 223
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
...+.+++|+|++.+|++|+.||.|+||++
T Consensus 763 ~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 763 SQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 346889999999999999999999999996
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=198.10 Aligned_cols=276 Identities=19% Similarity=0.273 Sum_probs=228.1
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
..+.++...|....+++|+.|+.+.++|....+.+..+.+|...+..+.++.+...++.+ +.+..|++|..-..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~a------Sad~~i~vws~~~~ 293 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITA------SADEIIRVWSVPLS 293 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeec------CCcceEEeeccccc
Confidence 446778888877899999999999999999999888888888777777776655544432 44578999999877
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC----ccEEEEcCCCCEEEEEEcCCeEEE
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQGLVFAVAMEAGAIKL 183 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~dg~i~i 183 (338)
........|..+|+.+..+|.|+||+++|.|++.-..|++++.+........ ..+..|+|||.+|.+|..|+.+++
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 7777788999999999999999999999999999999999998765444421 245789999999999999999999
Q ss_pred EeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEE
Q 019603 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 263 (338)
Q Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~ 263 (338)
||++.... .-.+.+|+++|..+.|+.+|-|+++++.|+.|++||++..+....+...... .+..++|.+.|.||+
T Consensus 374 wdlks~~~----~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 374 WDLKSQTN----VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLG 448 (506)
T ss_pred EEcCCccc----cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEE
Confidence 99986432 2234579999999999999999999999999999999877655556555433 688999999999999
Q ss_pred EEcCCCcEEEEECC--CCCeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEe
Q 019603 264 SGSGDGTLHAWNIN--TRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFW 314 (338)
Q Consensus 264 sgs~Dg~i~vWd~~--~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw 314 (338)
.+|.|=.|++++-. ++.++..+.-|.+..++++|....++++++|. .+++.
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 99888666666643 56788888889999999999999999999983 45554
No 76
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2e-25 Score=207.76 Aligned_cols=248 Identities=14% Similarity=0.158 Sum_probs=182.9
Q ss_pred eeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe--------EEEeecCC
Q 019603 45 ASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR--------ILRYFKGH 116 (338)
Q Consensus 45 ~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~H 116 (338)
||.++.+++|+......+..+.+|...+..++|++.....+.++ +.+++|++|++.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASg-----S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASG-----SEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEE-----eCCCeEEEEECCCCCccccccccceEEeecC
Confidence 66789999999877777777778888899999987643333322 345899999997532 34567899
Q ss_pred ccceEEEEEcCCCCE-EEEEECCCeEEEEECCCcceeeeeeec-CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCC
Q 019603 117 KERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 194 (338)
Q Consensus 117 ~~~V~~l~~~~~~~~-l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 194 (338)
...|.+++|+|++.. ++|||.|++|++||+++++....+... ....+.|+++|.++++++.|+.+++||+++... .
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~--i 202 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI--A 202 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE--E
Confidence 999999999999875 579999999999999988765444432 234588999999999999999999999987432 1
Q ss_pred eeEEecCCCCce-----EEEEEcCCCCEEEEEecCC----cEEEEEccC-CeeEEEeeeCCCCCCCeeEEECCCCCEEEE
Q 019603 195 DTFLVGGDTAEV-----CDIKFSNDGKSMLLTTTNN----NIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVS 264 (338)
Q Consensus 195 ~~~~~~~~~~~i-----~~v~~sp~~~~i~~~~~d~----~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~fs~~~~~l~s 264 (338)
....+|...+ ....|++++.++++++.++ .|++||++. +..+.......+...+.-.-..++|.++++
T Consensus 203 --~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 203 --SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred --EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence 2234555433 2234568999999988774 799999874 444444444444333333444567999999
Q ss_pred EcCCCcEEEEECCCCCeEeEee--CCCCceEEEEEcCCCc
Q 019603 265 GSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRA 302 (338)
Q Consensus 265 gs~Dg~i~vWd~~~~~~~~~~~--~h~~~v~~l~~~p~~~ 302 (338)
|++|+.||+|++..+. +..+. .+..++.+++|.|+..
T Consensus 281 GkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 9999999999998764 33332 2567889999999875
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-26 Score=201.19 Aligned_cols=271 Identities=22% Similarity=0.236 Sum_probs=210.1
Q ss_pred cceeEEEeecCCCE--EEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 28 GKINSLDFHRKDDL--LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 28 ~~V~~l~~s~~~~~--l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
..|.+++|+|...+ .+|+| -.+.||+..+....+++......+....|..++..+.++ ...+.++++|..
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG------D~sG~V~vfD~k 98 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG------DESGHVKVFDMK 98 (487)
T ss_pred CcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc------CCcCcEEEeccc
Confidence 67999999997653 44444 679999998766666665566677888887766544332 234789999976
Q ss_pred CCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcCC-CCEEEEEEcCCeE
Q 019603 106 DNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQ-GLVFAVAMEAGAI 181 (338)
Q Consensus 106 ~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~dg~i 181 (338)
+...++.+++|+.+|..+.|+|.++ .+++||.|+.+++||+.+...+-.+..+. ..+.++.|. +.++++|+-||.|
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 6667788999999999999999765 68899999999999998776422232222 345667774 4589999999999
Q ss_pred EEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
|+||.|... ... .. -.|..+|..+.+-|.|..|++++ .+.|++||+.+|.+.. .....|...|+++++..++.-
T Consensus 179 rl~DtR~~~-~~v--~e-lnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll-~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 179 RLWDTRSLT-SRV--VE-LNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL-TSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred EEEEeccCC-cee--EE-ecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh-hhhhcccceEEEEEeecCCce
Confidence 999999753 121 22 25677899999999998877765 5789999998665443 233347789999999999999
Q ss_pred EEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEE
Q 019603 262 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSF 313 (338)
Q Consensus 262 l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~i 313 (338)
|+|||-||.|+|||+.+.+.+..++ ..++|.+++.+|+++.++.|-++..+
T Consensus 253 LlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEeccccee
Confidence 9999999999999999989988886 46899999999999999998654433
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-27 Score=190.49 Aligned_cols=252 Identities=17% Similarity=0.252 Sum_probs=192.1
Q ss_pred hccccceeeccCCcceeEEEeecC-CCEEEEeeCCCcEEEEEcCC-CeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRK-DDLLVTASDDDSVRLYDIVS-AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
+...+...|. -.+.+..++|++. .+.+++|+.||+++|||+.. .+.+..+..|...|..+-++......+..+. +
T Consensus 49 ~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS--W 125 (311)
T KOG0277|consen 49 KGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS--W 125 (311)
T ss_pred CCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec--c
Confidence 3344444453 3577899999985 45899999999999999753 3355666677777877777766555554442 2
Q ss_pred CCCCceeEEEEccCCeEEEeecCCccceEEEEEcCC-CCEEEEEECCCeEEEEECCCcceeeeeeecCccEEE--EcC-C
Q 019603 93 DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVA--FDQ-Q 168 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~--~~~-~ 168 (338)
+++||+|+...++.+++++||...|....|+|. .+.++|+|.|+++++||+|..-....+..+...+++ |+. +
T Consensus 126 ---D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~ 202 (311)
T KOG0277|consen 126 ---DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN 202 (311)
T ss_pred ---CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC
Confidence 389999999999999999999999999999996 568999999999999999865333336666644443 443 5
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEEeeeCCCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
..++++|+.|+.|+.||+|..... .+++.+|...|..++|||... .+++++.|=+++|||...+... .-+...|.
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~-~e~~~~Ht 278 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA-IETVDHHT 278 (311)
T ss_pred CcEEEecCCCceEEEEehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh-hhhhhccc
Confidence 679999999999999999987643 355678999999999999765 6778888999999997644321 11233555
Q ss_pred CCCeeEEECC-CCCEEEEEcCCCcEEEEEC
Q 019603 248 NTNTEATFTP-DGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 248 ~~~~~~~fs~-~~~~l~sgs~Dg~i~vWd~ 276 (338)
..+..+.||+ ++.++|+.+.|+.++||+-
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEeccccccccCceeeecccccceeeecc
Confidence 5566677776 5679999999999999983
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.5e-26 Score=179.51 Aligned_cols=245 Identities=20% Similarity=0.325 Sum_probs=190.6
Q ss_pred ccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEe-----EEeecccCeeeEEEeecCC---eeEEecCccCCCC
Q 019603 24 SDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIK-----TTYHKKHGADCVCFTHHPS---SVICSTKYNLDST 95 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 95 (338)
+-|+|.|+|.+|+|+|++|++||.|++||+--+....+-. .+..|...+.-++|..++. .++.+. ...
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~----gag 161 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA----GAG 161 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec----CCC
Confidence 3589999999999999999999999999998665433211 1233445566777765543 233322 245
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec----C-----ccEEEEc
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----G-----RPTVAFD 166 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~----~-----~~~~~~~ 166 (338)
+..|.+-|...|+..+.+.||++-|.++ ++-++-.|+|||.|++||.||+|.+.|..++... + ...++.+
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence 5789999999999999999999999986 3345779999999999999999999887765431 1 1247889
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC--eeEEEeeeC
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLE 244 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~--~~~~~~~~~ 244 (338)
|.|.++++|-.|...-+||+|... +++. ...|...|.++.|+|...|+++++.|..|++-|+... +........
T Consensus 241 psgrll~sg~~dssc~lydirg~r--~iq~--f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGR--MIQR--FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCc--eeee--eCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 999999999999999999998643 2322 3578899999999999999999999999999987633 122223334
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.|...+..+.|+|..--+++.+.|+++.+|-++
T Consensus 317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 555677889999999999999999999999764
No 80
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=182.38 Aligned_cols=245 Identities=17% Similarity=0.267 Sum_probs=201.6
Q ss_pred eEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEE
Q 019603 63 KTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVR 142 (338)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~ 142 (338)
..+..+..++..+.|+.++.+.+.. +++.++|+|+...+.+++++.||-..|..++.+.|+..|+||+.|+.|.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltc------GsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTC------GSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEc------CCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEE
Confidence 3455666778888888777765543 4569999999999999999999999999999999999999999999999
Q ss_pred EEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEE
Q 019603 143 IWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 220 (338)
Q Consensus 143 iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~ 220 (338)
+||+.+++.+..+..|.. +.+.|+.+..++++|+-|..+++||.|+....|++.+ ..-...|..+..+ +..|++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil--dea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL--DEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh--hhhcCceeEEEec--ccEEEe
Confidence 999999999888877654 4689999999999999999999999998776666443 2234567777774 567999
Q ss_pred EecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceE--EEEEc
Q 019603 221 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA--CLKWA 298 (338)
Q Consensus 221 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~--~l~~~ 298 (338)
++.||+++.||++.|+....+- + .++++++|+++++.++.++-|+++|+-|-.+++.++.+++|...=. ...++
T Consensus 161 GS~DGtvRtydiR~G~l~sDy~--g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSSDYF--G--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred eccCCcEEEEEeecceeehhhc--C--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 9999999999999887654332 2 3699999999999999999999999999999999999999975443 35566
Q ss_pred CCCceEEeecce--EEEeeeCCCCC
Q 019603 299 PRRAMFVAASSV--LSFWIPNPSSN 321 (338)
Q Consensus 299 p~~~~l~s~s~~--~~iw~~~~~~~ 321 (338)
.....+++||+. +-+|..-.+.+
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred ccceeEEeccCCceEEEEEecccee
Confidence 777899999854 56776554433
No 81
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.2e-25 Score=204.41 Aligned_cols=253 Identities=8% Similarity=0.123 Sum_probs=184.7
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
.|-..|+....++++..+++++.+..+..|+...+..+... .... . +
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~--------------~~~G-------------~------~ 64 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKH--------------TDYG-------------K------L 64 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeec--------------cccc-------------c------C
Confidence 44556677777888888999999999999987544321100 0000 0 0
Q ss_pred cCCeEEEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcc-------eeeeeeecCc--cEEEEcCCC-CEEE
Q 019603 105 YDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNA-------CQGILRLRGR--PTVAFDQQG-LVFA 173 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~-------~~~~~~~~~~--~~~~~~~~~-~~~~ 173 (338)
......+.+|++.|++++|+| ++++|+|||.|++|++||+..+. .+..+..+.. ..+.|+|++ .+++
T Consensus 65 --~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 65 --ASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred --CCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEE
Confidence 000123678999999999999 78899999999999999997642 2333444433 357899975 6899
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC-CCee
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN-TNTE 252 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~ 252 (338)
+++.|+.|++||++.... ...+.+|...|.++.|+|++.++++++.|+.|++||.++++....+. .|.. ....
T Consensus 143 Sgs~DgtVrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~--~H~~~~~~~ 216 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE--AHASAKSQR 216 (493)
T ss_pred EEeCCCEEEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe--cCCCCcceE
Confidence 999999999999876431 23445788889999999999999999999999999999887665444 3432 3456
Q ss_pred EEECCCCCEEEEEc----CCCcEEEEECCCCC-eEeEeeCC-CCceEEEEEcCCCceEEeec---ceEEEeeeCC
Q 019603 253 ATFTPDGQYVVSGS----GDGTLHAWNINTRN-EVACWNGN-IGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 318 (338)
Q Consensus 253 ~~fs~~~~~l~sgs----~Dg~i~vWd~~~~~-~~~~~~~h-~~~v~~l~~~p~~~~l~s~s---~~~~iw~~~~ 318 (338)
+.|.+++..+++++ .|+.|++||+++.. +......+ ...+....|+|++.++++++ +.|++|....
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 78999988888754 58999999998754 44444433 34566778999999888764 4799997663
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=183.88 Aligned_cols=230 Identities=22% Similarity=0.382 Sum_probs=189.5
Q ss_pred ecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEE--eecCCccceEEEEEcCC-CCEEEEEECCCeEEE
Q 019603 67 HKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILR--YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRI 143 (338)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~i 143 (338)
.+...+..++|+.++..+.++ +.++++++|+++..+... .+++|.+.|-.+.|+|. ...|++++.|++|++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasg------s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASG------SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred hhhhcceEEEEcccCceeeec------ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 344567778888777776643 345899999998765543 45789999999999885 468999999999999
Q ss_pred EECCCcceeeeeeecCc-cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe
Q 019603 144 WDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 222 (338)
Q Consensus 144 Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~ 222 (338)
||.|.++|...+...+. ..+.++|+|..++++..|..|.++|.|.+.... ...-...+..+.|+.++.+++...
T Consensus 92 wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~-----~~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN-----EEQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred EEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee-----hhcccceeeeeeecCCCCEEEEec
Confidence 99999999877776655 458999999999999999999999998754311 112244577788998888888888
Q ss_pred cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc
Q 019603 223 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 223 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
..|.|.|.....-+ ....+..|+..+.++.|+|+|+|||+|+.|-.+.+||+++.-+++.+..+.-+|..|.||-+|+
T Consensus 167 GlG~v~ILsypsLk--pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 167 GLGCVEILSYPSLK--PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred CCceEEEEeccccc--cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 88999998765433 3345667888899999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecc
Q 019603 303 MFVAASS 309 (338)
Q Consensus 303 ~l~s~s~ 309 (338)
+||+||.
T Consensus 245 ~lASaSE 251 (313)
T KOG1407|consen 245 MLASASE 251 (313)
T ss_pred eeeccCc
Confidence 9999995
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.4e-26 Score=186.98 Aligned_cols=290 Identities=14% Similarity=0.227 Sum_probs=223.4
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
.+.+.+.|.||++.|+.++-......+.++|.|.+.+||.+++|+|+.++.+|...++++.|+..+..++.++.
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG------ 210 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG------ 210 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC------
Confidence 35567788999999999999988889999999999999999999999999999999999998776555544332
Q ss_pred CceeEEEEc------------------------------------cCC----eEEEeecCCccceEEEEEcCCCCEEEEE
Q 019603 96 GESLRYLSM------------------------------------YDN----RILRYFKGHKERVISLCMSPVNDSFMSG 135 (338)
Q Consensus 96 ~~~i~~~~~------------------------------------~~~----~~~~~~~~H~~~V~~l~~~~~~~~l~Sg 135 (338)
+.+-.+|.. .++ -++..++||...|.+..|-..+++++++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTa 290 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTA 290 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeee
Confidence 122222220 001 1345689999999999999999999999
Q ss_pred ECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC
Q 019603 136 SLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 213 (338)
Q Consensus 136 s~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp 213 (338)
|+|.+..+||+++++....+..+... -++-+|...++++.+.|-+.++||+|... .. ...+.||+..|+.+.|..
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-~s--V~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-QS--VAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc-ce--eeeecccccceeEEEEec
Confidence 99999999999999988777665543 35678888899999999999999998422 12 233458999999999987
Q ss_pred CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe-----eCC
Q 019603 214 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-----NGN 288 (338)
Q Consensus 214 ~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-----~~h 288 (338)
+.+ +++++.|.+|++||+.... ..+...+....++.++.+..++.++--..++.||+||++- ..+..+ .+|
T Consensus 368 dd~-vVSgSDDrTvKvWdLrNMR--splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgH 443 (481)
T KOG0300|consen 368 DDR-VVSGSDDRTVKVWDLRNMR--SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGH 443 (481)
T ss_pred CCc-eeecCCCceEEEeeecccc--CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCccccccc
Confidence 654 8899999999999986432 2222233456788899999889999999999999999974 333333 589
Q ss_pred CCceEEEEEcCCCc--eEEeec--ceEEEeeeCC
Q 019603 289 IGVVACLKWAPRRA--MFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 289 ~~~v~~l~~~p~~~--~l~s~s--~~~~iw~~~~ 318 (338)
..-|.|.+|..+-. -|++++ ..+.-|.++.
T Consensus 444 rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 444 RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 99999999985533 466665 3455576653
No 84
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7e-25 Score=204.14 Aligned_cols=234 Identities=13% Similarity=0.121 Sum_probs=173.5
Q ss_pred ccceeeccCCcceeEEEeecC-CCEEEEeeCCCcEEEEEcCCCe--------eEeEEeecccCeeeEEEeecCCeeEEec
Q 019603 18 AMAAIFSDFGGKINSLDFHRK-DDLLVTASDDDSVRLYDIVSAK--------LIKTTYHKKHGADCVCFTHHPSSVICST 88 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
.++..+.+|.+.|.+++|+|+ +.+|+|||.|++|+|||+.++. .+..+.+|...+.+++|++....+++++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 466788999999999999997 7899999999999999997642 2234556667788888887665554332
Q ss_pred CccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--E----
Q 019603 89 KYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--T---- 162 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~---- 162 (338)
+.++++++||+.+++....+. |...|.+++|+|+|.+|++++.|++|+|||+++++....+..|... .
T Consensus 145 -----S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 145 -----GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred -----eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 235899999999988777665 6788999999999999999999999999999999887777655432 1
Q ss_pred -EEEcCCCCEEEEEEcC----CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee
Q 019603 163 -VAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 163 -~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
..|++++.++++++.+ +.|+|||++... .++...........+...-.++++.++++|+.|+.|++|+...+..
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence 1245788888877766 479999998643 2343333333344444444456688899999999999999876643
Q ss_pred EEEeeeCCCCCCCeeEEECCCC
Q 019603 238 RCGFSLEPSPNTNTEATFTPDG 259 (338)
Q Consensus 238 ~~~~~~~~~~~~~~~~~fs~~~ 259 (338)
.. +....+..+...++|.|.-
T Consensus 298 ~~-l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 298 RK-VNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred Ee-ecccccCCCccceEEcccc
Confidence 22 2222344567778999864
No 85
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=196.77 Aligned_cols=249 Identities=14% Similarity=0.257 Sum_probs=194.2
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeec-ccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHK-KHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
++...++.+|..+|.-+.||||+++|++|+.|..+++||..+|.++..+... ...+.+.+|.+++..++++ +.
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~G------s~ 332 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTG------SP 332 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEec------CC
Confidence 7778899999999999999999999999999999999999999987765444 3567777887777776654 34
Q ss_pred CceeEEEEccCCeEEEeecCCc-cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec-CccEEEEcCCCCEEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHK-ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFA 173 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~-~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 173 (338)
++++.-|++... ....+++.. -.|.++++++||+++++...|..|++++..+..+.+.+..+ +....+++.++.+++
T Consensus 333 dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 333 DRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL 411 (519)
T ss_pred CCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEE
Confidence 588999998654 344455544 46999999999999999999999999999877766555443 345678899999999
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCC--ceEEEEEcC-CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA--EVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~v~~sp-~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
+.-.+..+++||++.... ... .-||.. -+..-+|-. +..++++|+.|+.|+||+..+|+.+. .+.+|...+
T Consensus 412 vnL~~qei~LWDl~e~~l--v~k--Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~--~LsGHs~~v 485 (519)
T KOG0293|consen 412 VNLQDQEIHLWDLEENKL--VRK--YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA--VLSGHSKTV 485 (519)
T ss_pred EEcccCeeEEeecchhhH--HHH--hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE--eecCCccee
Confidence 999999999999873221 000 012221 122234543 44789999999999999999998776 455777889
Q ss_pred eeEEECCCCC-EEEEEcCCCcEEEEECCC
Q 019603 251 TEATFTPDGQ-YVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 251 ~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~ 278 (338)
++++|+|... ++||+|.||+||||....
T Consensus 486 NcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 486 NCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999775 689999999999998864
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4.9e-27 Score=200.08 Aligned_cols=250 Identities=20% Similarity=0.364 Sum_probs=201.5
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
+.+..+.+|.|-.|+|+.+.|.++++++++++.|+.+++|++...+...++.+|...+.++.|......++.+ +
T Consensus 207 ~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg------s 280 (459)
T KOG0288|consen 207 EKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG------S 280 (459)
T ss_pred chhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeec------c
Confidence 4467888999999999999999999999999999999999999999988888888888877776544443332 3
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEEE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFA 173 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 173 (338)
.+.++++||+....+.+++.. ...+..+..+ ...++||-.|++||.||.+...+...+...+. ..+..++++..++
T Consensus 281 ~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lL 357 (459)
T KOG0288|consen 281 ADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELL 357 (459)
T ss_pred ccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEe
Confidence 458999999999888776542 2333444443 45689999999999999999998888887774 4578899999999
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecC--CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGG--DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
+.+.|..+.++|+|+..... .+...+ .....+.+.|||++.|+++|+.|+.|+||+..+++..........+..++
T Consensus 358 sssRDdtl~viDlRt~eI~~--~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~ 435 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRTKEIRQ--TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAIT 435 (459)
T ss_pred eecCCCceeeeecccccEEE--EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceE
Confidence 99999999999999754311 111111 11237788999999999999999999999999998776666555555799
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEE
Q 019603 252 EATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
+++|+|.|.+|++++.++.+.+|.
T Consensus 436 s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 436 SLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999994
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.1e-26 Score=182.42 Aligned_cols=252 Identities=18% Similarity=0.260 Sum_probs=193.8
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
.-.+|.+-|-.+...--|+.|+|||+|++|||+..+....
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~---------------------------------------- 45 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ---------------------------------------- 45 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----------------------------------------
Confidence 3457888888888877899999999999999998754221
Q ss_pred EEccCCeEEEeecCCccceEEEEEcC--CCCEEEEEECCCeEEEEECCCcceeeee--e--ecCccEEEEcCC--CCEEE
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQGIL--R--LRGRPTVAFDQQ--GLVFA 173 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~--~~~~l~Sgs~D~~I~iWd~~~~~~~~~~--~--~~~~~~~~~~~~--~~~~~ 173 (338)
.+++.++.||.++|+.++|.. -|.+|+|+|.||.|.||.-..++-.+.. . ..+.+.++|.|+ |..|+
T Consensus 46 -----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~La 120 (299)
T KOG1332|consen 46 -----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLA 120 (299)
T ss_pred -----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEE
Confidence 023456899999999999964 5889999999999999998766432221 1 223456788776 45899
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC---C-----------CEEEEEecCCcEEEEEccCCeeEE
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---G-----------KSMLLTTTNNNIYVLDAYGGEKRC 239 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---~-----------~~i~~~~~d~~i~i~~~~~~~~~~ 239 (338)
+++.||.|.+++.+... .-........|...++++.|.|. | +.+++++.|+.|+||+...++...
T Consensus 121 casSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL 199 (299)
T ss_pred EeeCCCcEEEEEEcCCC-CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh
Confidence 99999999999877531 11112233467788999999986 4 559999999999999988776555
Q ss_pred EeeeCCCCCCCeeEEECCCC----CEEEEEcCCCcEEEEECCCC---CeEeEeeCCCCceEEEEEcCCCceEEeecc--e
Q 019603 240 GFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTR---NEVACWNGNIGVVACLKWAPRRAMFVAASS--V 310 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~fs~~~----~~l~sgs~Dg~i~vWd~~~~---~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~ 310 (338)
...+.+|...+.+++|.|.- .+|||+|.||++.||-.+.. -....++.....++.+.||+.|.+|+.+++ .
T Consensus 200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence 55678899999999999975 57999999999999988632 123344455788999999999999998764 6
Q ss_pred EEEeeeCCC
Q 019603 311 LSFWIPNPS 319 (338)
Q Consensus 311 ~~iw~~~~~ 319 (338)
+.+|+.+..
T Consensus 280 vtlwke~~~ 288 (299)
T KOG1332|consen 280 VTLWKENVD 288 (299)
T ss_pred EEEEEeCCC
Confidence 889987654
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.4e-26 Score=196.66 Aligned_cols=245 Identities=21% Similarity=0.350 Sum_probs=198.1
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
..+|.-++.-|+++.|-.||++|+.|..-|.|+++|..+...++.+..|.+++..+.|++....++.+. +++..+
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~-----sDd~v~ 135 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG-----SDDKVV 135 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec-----CCCceE
Confidence 445667789999999999999999999999999999776667788889999999999988877766542 456889
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeee-cCc--cEEEEcCCCCEEEEE
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRL-RGR--PTVAFDQQGLVFAVA 175 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 175 (338)
++||+.+......+.+|++.|.+.+|+|.+. .++|||.||+||+||+|... .....+ ++. ..+.+-|.|..++++
T Consensus 136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasA 214 (487)
T KOG0310|consen 136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASA 214 (487)
T ss_pred EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEc
Confidence 9999999987668999999999999999765 78999999999999998764 222332 343 347788888888877
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
+. ..+++||+-.+.+. ......|...|+|+++..++..+++++-|+.+++|+..+-+.+..+.. ++++.+++.
T Consensus 215 gG-n~vkVWDl~~G~ql---l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiav 287 (487)
T KOG0310|consen 215 GG-NSVKVWDLTTGGQL---LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAV 287 (487)
T ss_pred CC-CeEEEEEecCCcee---hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEe
Confidence 65 58999998644321 111224788999999999999999999999999999766555554443 467999999
Q ss_pred CCCCCEEEEEcCCCcEEEEECC
Q 019603 256 TPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
+|+++.++.|.+||.+.+=+..
T Consensus 288 s~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cCCCceEEEecccceeeeehhh
Confidence 9999999999999998776443
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.9e-24 Score=168.88 Aligned_cols=303 Identities=17% Similarity=0.251 Sum_probs=224.3
Q ss_pred cccCHHHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC----------C-----eeEeEEeecccC
Q 019603 7 AELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS----------A-----KLIKTTYHKKHG 71 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~----------~-----~~~~~~~~~~~~ 71 (338)
-|+|++.-+-|..+.+|. -...|.+++|+|.|.+-+.||..+++||--... . ...+...+|...
T Consensus 13 geedd~~k~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs 91 (350)
T KOG0641|consen 13 GEEDDKEKKHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS 91 (350)
T ss_pred CccccccccceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCcc
Confidence 356767777788888884 478899999999999999999999999975421 1 112334566667
Q ss_pred eeeEEEeecCCeeEEecCccCCCCCceeEEEEccC--CeE---EEeecCCccceEEEEEcCC----CCEEEEEE-CCCeE
Q 019603 72 ADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD--NRI---LRYFKGHKERVISLCMSPV----NDSFMSGS-LDHSV 141 (338)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~---~~~~~~H~~~V~~l~~~~~----~~~l~Sgs-~D~~I 141 (338)
+.|++|++.+..+..+ +.+++|++.-... .+. --.|.-|.+.|..++|-.+ +..|+|++ .|..|
T Consensus 92 iyc~~ws~~geliatg------sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATG------SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred EEEEEecCccCeEEec------CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 8899998776655433 4568888876643 221 2346679999999999543 45778776 45666
Q ss_pred EEEECCCcceeeeeeecCccEE-EEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCe--eEEecC-CCCceEEEEEcCCCCE
Q 019603 142 RIWDLRVNACQGILRLRGRPTV-AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD--TFLVGG-DTAEVCDIKFSNDGKS 217 (338)
Q Consensus 142 ~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~-~~~~i~~v~~sp~~~~ 217 (338)
.+=|-..++....+..+...++ .++-+|-++++|++|.+||+||+|...+-... .+..++ +...|..++..|.|++
T Consensus 166 y~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 6667777766555555544444 45678999999999999999999865431110 011111 2456889999999999
Q ss_pred EEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC----CCeEeEeeCCCCceE
Q 019603 218 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT----RNEVACWNGNIGVVA 293 (338)
Q Consensus 218 i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~----~~~~~~~~~h~~~v~ 293 (338)
++++..|....+||++.+..+. ++++|...+.++.|||...||++++-|..|++=|+.- .-.+-....|...+.
T Consensus 246 l~sg~~dssc~lydirg~r~iq--~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGRMIQ--RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred eeeccCCCceEEEEeeCCceee--eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceE
Confidence 9999999999999999887665 5578888999999999999999999999999999863 223334457888888
Q ss_pred EEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 294 CLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 294 ~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
.++|+|+.--|++.| .+..+|..++
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccCC
Confidence 999999988888776 5788997653
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=211.58 Aligned_cols=211 Identities=21% Similarity=0.354 Sum_probs=166.7
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
-++.+.|.||.+.|..|.||. ..+|+|+|+|+|||||++....|++.
T Consensus 359 ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~-------------------------------- 405 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKV-------------------------------- 405 (712)
T ss_pred ccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeE--------------------------------
Confidence 357888999999999999986 66999999999999999976665531
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAV 174 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 174 (338)
-.|.+.|+|++|+| |+++|+|||.|+.||||++...+...-..++. ...+++.|+|...++
T Consensus 406 -----------------F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avI 468 (712)
T KOG0283|consen 406 -----------------FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVI 468 (712)
T ss_pred -----------------EecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEE
Confidence 13899999999999 46799999999999999997665433333333 345899999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCC------CCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEEeeeCCCC
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGD------TAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
|+-+|.+++|+.+...- ...+.+..+ ...|+.+.|.|... .+++.+.|..|+|+|.++...+..|.+....
T Consensus 469 Gt~~G~C~fY~t~~lk~--~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 469 GTFNGYCRFYDTEGLKL--VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT 546 (712)
T ss_pred EEeccEEEEEEccCCeE--EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence 99999999999764321 111111111 23699999998543 5899999999999998777777767666555
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
..-....|+.||++|+++++|..|+||++...
T Consensus 547 ~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 547 SSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 56678899999999999999999999998543
No 91
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.5e-26 Score=202.70 Aligned_cols=214 Identities=15% Similarity=0.243 Sum_probs=190.0
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAV 174 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 174 (338)
+.+.+|+.++...++.+.--.-+|.+..|-+..+++++||.|..||||+.++.+.++.|+.|.. .+++.+|....+++
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLt 114 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLT 114 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEe
Confidence 7899999999999999988889999999999899999999999999999999999999998775 56888999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC-CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeE
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 253 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 253 (338)
++.|-.|++||.... . .-....+||...|++++|+|. ...+++++-|++|++|.+... .+.|++.+|...|+++
T Consensus 115 sSDDm~iKlW~we~~-w--a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~--~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 115 SSDDMTIKLWDWENE-W--ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP--HPNFTLEGHEKGVNCV 189 (794)
T ss_pred cCCccEEEEeeccCc-e--eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC--CCceeeeccccCcceE
Confidence 999999999996542 1 123345789999999999995 567999999999999997554 4556777888999999
Q ss_pred EECCCC--CEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 254 TFTPDG--QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 254 ~fs~~~--~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
.|-+.| .||+||+.|.+|+|||+.+..|++++.||..-|..+.|+|.-+++++|| ++++||-
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 998755 6999999999999999999999999999999999999999999999998 6899994
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-26 Score=204.97 Aligned_cols=280 Identities=17% Similarity=0.260 Sum_probs=205.0
Q ss_pred cCCccee---EEEee-cCCCEEEEeeCCCcEEEEEcCCCe------eEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 25 DFGGKIN---SLDFH-RKDDLLVTASDDDSVRLYDIVSAK------LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 25 ~h~~~V~---~l~~s-~~~~~l~s~s~D~~i~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
.|...|+ .+..+ |.++||+|||.|+.|++|+..... .+.++.+|..-++-+....++..++. .+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS------~S 92 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLIS------AS 92 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEE------ec
Confidence 3444454 55555 467789999999999999985322 23333444333433333334333333 24
Q ss_pred CCceeEEEEccCC--eEEEeecCCccceEEEEE-cCCCCEEEEEECCCeEEEEECCCcc--eeeeee------e-----c
Q 019603 95 TGESLRYLSMYDN--RILRYFKGHKERVISLCM-SPVNDSFMSGSLDHSVRIWDLRVNA--CQGILR------L-----R 158 (338)
Q Consensus 95 ~~~~i~~~~~~~~--~~~~~~~~H~~~V~~l~~-~~~~~~l~Sgs~D~~I~iWd~~~~~--~~~~~~------~-----~ 158 (338)
.+-++++|+.... -+..++..|++.|.|+++ .+++..+||||.|+.|.+||++++. ....+. . .
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 5689999999876 578889999999999999 7788899999999999999998762 221111 1 1
Q ss_pred CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE
Q 019603 159 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 238 (338)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~ 238 (338)
+...++.++.|.++++|+..+-+++||.|+..+ .+.+.||+..|.++..++||..++++++|++|++||+...+++
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccccc----eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 123467788899999999999999999987543 2334489999999999999999999999999999998655555
Q ss_pred EEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC-CeEeEeeCCCCceEEEEEcCC--CceEEeecceEEEee
Q 019603 239 CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPR--RAMFVAASSVLSFWI 315 (338)
Q Consensus 239 ~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~~~~iw~ 315 (338)
. ++.-|...+.++..+|+-..+++|+.||.|+.=|+.+. +++..++ ...+|..+..+.. .-++++..+.|+=|.
T Consensus 249 ~--T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 249 A--TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred e--eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecC
Confidence 4 44555566889999999999999999999999999984 4444444 3456777777733 235666667888785
Q ss_pred eC
Q 019603 316 PN 317 (338)
Q Consensus 316 ~~ 317 (338)
..
T Consensus 326 ~~ 327 (735)
T KOG0308|consen 326 LE 327 (735)
T ss_pred Cc
Confidence 43
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=6.1e-25 Score=188.46 Aligned_cols=250 Identities=20% Similarity=0.324 Sum_probs=203.9
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
+...+|.||...|+.+.|+|+...+++++.|..|++|......+......|..+|..+..++.+.+++.++ .++
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs------~d~ 325 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSAS------NDG 325 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEec------CCc
Confidence 45678999999999999999999999999999999999987776666777788888888888777777543 346
Q ss_pred eeEEEEccCCeEEEeecC--CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEE
Q 019603 98 SLRYLSMYDNRILRYFKG--HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 173 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~--H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 173 (338)
+....++.++..+..... ..-.+++++|+|||..|.+|..|+.|+|||++.+.....|..|..+ .+.|+.+|++++
T Consensus 326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLA 405 (506)
T ss_pred eEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEE
Confidence 677777777766544322 2234899999999999999999999999999988876667766554 489999999999
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeE
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 253 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 253 (338)
+++.|+.|++||+|.... +.++.+ .+..++..+.|.+.|.+++.++.+=.|++++..+.+.....+...|.+..+.+
T Consensus 406 t~add~~V~lwDLRKl~n--~kt~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v 482 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKN--FKTIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV 482 (506)
T ss_pred EEecCCeEEEEEehhhcc--cceeec-cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence 999999999999996542 334443 33457999999999999999988888888886666666656666676778899
Q ss_pred EECCCCCEEEEEcCCCcEEEEEC
Q 019603 254 TFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 254 ~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
.|....++++++|.|..++++.+
T Consensus 483 ~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 483 RFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eecccceEEeeccchhheEEeec
Confidence 99999999999999999888754
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-24 Score=193.02 Aligned_cols=271 Identities=18% Similarity=0.217 Sum_probs=212.7
Q ss_pred EEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEE
Q 019603 32 SLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILR 111 (338)
Q Consensus 32 ~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (338)
-++|++ .+.|+.| ....+.+|+-.+++.......+...+..+.+++.+..+..+. .++.+.+||..+.+.+.
T Consensus 182 lldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~------~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGT------SDGTVQIWDVKEQKKTR 253 (484)
T ss_pred Hhhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEee------cCCeEEEEehhhccccc
Confidence 356773 3344444 457899999999885544333356788888888877776543 34899999999999999
Q ss_pred eecC-CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeee-eeecCcc--EEEEcCCCCEEEEEEcCCeEEEEeCC
Q 019603 112 YFKG-HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI-LRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSR 187 (338)
Q Consensus 112 ~~~~-H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~dg~i~i~d~~ 187 (338)
.+.+ |...|-+++|. +..+.+|+.|+.|..+|+|..+.... +..|... -+.|++++.++++|+.|+.+.|||..
T Consensus 254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 9999 99999999998 67899999999999999998765433 4434333 37899999999999999999999984
Q ss_pred CCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEe--cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEE
Q 019603 188 SYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 264 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~s 264 (338)
.. .+. +.+..|...|-.++|+|-.. .+|+|+ .|+.|++||..++..+.. ......|..+.|++..+-|++
T Consensus 332 ~~--~p~--~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~---vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 332 SP--EPK--FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS---VDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred Cc--ccc--EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc---cccCCceeeEEEcCCCCEEEE
Confidence 32 222 34457899999999999654 555554 488999999998876532 222356888999999977777
Q ss_pred E--cCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCC
Q 019603 265 G--SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 265 g--s~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~ 319 (338)
+ -.+..|.||++.+.+++..+.+|...|..|+++||+..+++|+ +++++|..-+.
T Consensus 405 thG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 3577899999999999999999999999999999999999986 68999965443
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.4e-24 Score=187.41 Aligned_cols=251 Identities=17% Similarity=0.292 Sum_probs=188.2
Q ss_pred cceeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeE----------eEEeecccCeeeEEEeecCCeeEEe
Q 019603 19 MAAIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLI----------KTTYHKKHGADCVCFTHHPSSVICS 87 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
++.....|.|+|+.++..|+.. +++|.+..+.+.|||..+..-. ..+.+|......++|+......+.+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 3444458999999999999765 6777888999999998643211 1344554444556666554443333
Q ss_pred cCccCCCCCceeEEEEccCCe-------EEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCC--cceeeeeee
Q 019603 88 TKYNLDSTGESLRYLSMYDNR-------ILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRV--NACQGILRL 157 (338)
Q Consensus 88 ~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~--~~~~~~~~~ 157 (338)
.+.+.++.+||+.... ....+.+|.+.|..++|++-. ..|+|++.|+.+.|||+|+ .++.+..+.
T Consensus 196 -----~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 196 -----GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred -----ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 2456899999996432 356789999999999999965 5789999999999999995 444555555
Q ss_pred cCc--cEEEEcC-CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEcc
Q 019603 158 RGR--PTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAY 233 (338)
Q Consensus 158 ~~~--~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~ 233 (338)
+.. .++.|+| ++.+||+|+.|+++.+||+|.... ++ +.+.+|...|..|.|+|+.+ .+++++.|+.+.+||+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~l--h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PL--HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-Cc--eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 443 5688998 556899999999999999998654 33 34568999999999999866 56677789999999975
Q ss_pred CCeeE------------EEeeeCCCCCCCeeEEECCCCCE-EEEEcCCCcEEEEECC
Q 019603 234 GGEKR------------CGFSLEPSPNTNTEATFTPDGQY-VVSGSGDGTLHAWNIN 277 (338)
Q Consensus 234 ~~~~~------------~~~~~~~~~~~~~~~~fs~~~~~-l~sgs~Dg~i~vWd~~ 277 (338)
.-... ..|.--+|...|..++|+|+..+ ++|.++|+.+.||+..
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 32111 12444578888999999999876 6678999999999986
No 96
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=7.5e-24 Score=192.68 Aligned_cols=277 Identities=16% Similarity=0.254 Sum_probs=220.3
Q ss_pred CcceeEEEeecCCC---EEEEeeCCCcEEEEEcCC-Cee------E--eEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 27 GGKINSLDFHRKDD---LLVTASDDDSVRLYDIVS-AKL------I--KTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 27 ~~~V~~l~~s~~~~---~l~s~s~D~~i~iWd~~~-~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
...+.+++|.|.+. .|++ -.++++-.|.++. ++. + ....+|...|..++++.+...++. +
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S-------g 391 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS-------G 391 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee-------c
Confidence 56788888888654 3444 5678999998865 211 1 233556667888888765443332 3
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVF 172 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 172 (338)
+++++++|+..+.++++++..- .+.+..|-|.++++++|...|.+.+||+.+.....+++.|.... ++..|++.-+
T Consensus 392 a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence 4589999999999999998644 88999999999999999999999999999888877777766544 6778999999
Q ss_pred EEEEcCCeEEEEeCCCCCC--CCCeeEE------ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 173 AVAMEAGAIKLFDSRSYDK--GPFDTFL------VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~--~~~~~~~------~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
++|+.|.+|++||...... +....++ .-.-...|.|+.+||||++++++--|+++++|-+.+-+ .-..+.
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK--FflsLY 547 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK--FFLSLY 547 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee--eeeeec
Confidence 9999999999999753221 1000100 00124569999999999999999999999999876654 345677
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEee
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWI 315 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~ 315 (338)
+|.-+|.++..|||++.++|||.|+.|+||-++=|.|.+.+-+|+.+|.+|.|-|+..+|.+++. .++-|.
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 89889999999999999999999999999999999999999999999999999999999999984 577774
No 97
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7e-24 Score=196.78 Aligned_cols=268 Identities=16% Similarity=0.262 Sum_probs=206.2
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC-eeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEE
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA-KLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
.|++.-+.|+|.|+|.+|++|+.|+.|++|+.... ....++..+ +....++......++.+ +..+++..+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~--g~~v~~ia~~s~~f~~~------s~~~tv~~y~ 82 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS--GELVSSIACYSNHFLTG------SEQNTVLRYK 82 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc--CceeEEEeecccceEEe------eccceEEEee
Confidence 78888999999999999999999999999987544 322333222 23333443333333332 3457899999
Q ss_pred ccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEEEEcCCeE
Q 019603 104 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 181 (338)
Q Consensus 104 ~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~i 181 (338)
..+++.-..+.--+-+++.++|+-+|+++|.||.|-.|++-++........++.+..++ +.++|++.++|+.+-||.+
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence 88776655555567889999999999999999999999999998887777777766554 7889999999999999999
Q ss_pred EEEeCCCCCCCCCeeEEe---cCC-CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC
Q 019603 182 KLFDSRSYDKGPFDTFLV---GGD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~~---~~~-~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 257 (338)
++||+...........+. ... ...++.++|+|++..+++.+.++.|.+|+..+.+....++...+...+..+.|+|
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 999987643321111000 011 3456778999999999999999999999999888887777776666789999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceE
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 304 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 304 (338)
+|+|||+++-||.|-|||+.+-.. .-....|.|++|.|+..-+
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred CCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 999999999999999999997211 1124689999999997744
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-24 Score=191.91 Aligned_cols=238 Identities=19% Similarity=0.276 Sum_probs=186.4
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEee-cccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYH-KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
.+.|+++.|+++|.+|+.|-.+|.|.|||..+.+.+..+.. |..-+.+++|. ...+.++ +.++.|..+|+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssG------sr~~~I~~~dvR 288 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSG------SRDGKILNHDVR 288 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEe------cCCCcEEEEEEe
Confidence 88999999999999999999999999999998888777766 55556666554 3333332 234789999998
Q ss_pred CCeEEE-eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcC-CCCEEEEE--EcCC
Q 019603 106 DNRILR-YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQ-QGLVFAVA--MEAG 179 (338)
Q Consensus 106 ~~~~~~-~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~--~~dg 179 (338)
..+... .+++|...|..++|+++++++|||+.|+.+.|||....+....+..|. ...++|+| +..+||+| +.|+
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 766543 489999999999999999999999999999999996666554444443 34578888 44577765 5899
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe--cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 257 (338)
.|++||..+... + ..-.....|+.+.|+|..+.++++. .++.|.||...+.+.+. .+.+|...|..+++||
T Consensus 369 ~i~fwn~~~g~~--i---~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~--~l~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 369 CIKFWNTNTGAR--I---DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA--ELLGHTSRVLYLALSP 441 (484)
T ss_pred EEEEEEcCCCcE--e---cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee--eecCCcceeEEEEECC
Confidence 999999875432 1 1113456799999999987776654 36789999987654443 4567778899999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCC
Q 019603 258 DGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
||..+++|+.|.++++|++-..
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999764
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2.7e-22 Score=176.51 Aligned_cols=268 Identities=11% Similarity=0.151 Sum_probs=193.1
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCcc
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKE 118 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~ 118 (338)
+.+++|++.|+.+++||+.+++.+..+..+ ..+..+.+++++..++... ..++.+++|+..+++....+..|..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~-----~~~~~v~~~d~~~~~~~~~~~~~~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCA-----SDSDTIQVIDLATGEVIGTLPSGPD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEE-----CCCCeEEEEECCCCcEEEeccCCCC
Confidence 357889999999999999998887766543 3355677777666554332 2347899999999888777766544
Q ss_pred ceEEEEEcCCCCEEE-EEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEcCC-eEEEEeCCCCCCCCCe
Q 019603 119 RVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFD 195 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~-Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dg-~i~i~d~~~~~~~~~~ 195 (338)
+..+.|+|+++.++ +++.|+.|++||+++++....+.... ...+.++|+|..++++..++ .+..||.+.... .
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~---~ 150 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI---V 150 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE---E
Confidence 46789999998764 55679999999998877665554322 34588999999998887765 466778764321 1
Q ss_pred eEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeCCC-----CCCCeeEEECCCCCEEEE-EcCC
Q 019603 196 TFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPS-----PNTNTEATFTPDGQYVVS-GSGD 268 (338)
Q Consensus 196 ~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~~~-----~~~~~~~~fs~~~~~l~s-gs~D 268 (338)
.... .......+.|+|+++++++++ .++.+++||..+++....+..... ......++|+|++++++. .+.+
T Consensus 151 ~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 151 DNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 1111 122356789999999886555 589999999988876554443211 112356889999998554 4567
Q ss_pred CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec---ceEEEeeeCCC
Q 019603 269 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 319 (338)
Q Consensus 269 g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~iw~~~~~ 319 (338)
+.|.+||..+++.+..+. +...+.+++|+|++..|++++ +++.+|.....
T Consensus 229 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 789999999888776553 345799999999999988763 57999976643
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=6.8e-24 Score=174.03 Aligned_cols=286 Identities=19% Similarity=0.269 Sum_probs=211.0
Q ss_pred ccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCee-------EeE--------EeecccCeeeEEEeecCCeeEEe
Q 019603 24 SDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKL-------IKT--------TYHKKHGADCVCFTHHPSSVICS 87 (338)
Q Consensus 24 ~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
.-|+|.|+++.+.+ .|+|++||+.|++|.+||++.... .+. ...|..++..+.|-+....++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 36999999999998 589999999999999999975431 000 01223355666666666666654
Q ss_pred cCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCC---CEEEEEECCCeEEEEECCCcceeeeeeecCcc--E
Q 019603 88 TKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN---DSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--T 162 (338)
Q Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~---~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~ 162 (338)
+. -+.++++||..+.+....|+ -.+.|.+-+++|.. ..+|+|..|-.|++-|+.+|.+.+++..|... .
T Consensus 120 sS-----FDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 120 SS-----FDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred cc-----ccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 42 34899999999887776665 56788888999864 36889999999999999999998888766544 4
Q ss_pred EEEcCCCC-EEEEEEcCCeEEEEeCCCCC------------CCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEE
Q 019603 163 VAFDQQGL-VFAVAMEAGAIKLFDSRSYD------------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 229 (338)
Q Consensus 163 ~~~~~~~~-~~~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i 229 (338)
+.|+|... ++++|+.||.+++||+|... ..|... ....|.+.+..++|..++.++++++.|+.+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEE
Confidence 67888765 78899999999999998531 111111 12357788999999999999999999999999
Q ss_pred EEccCCeeEE-EeeeCCCCCCCeeEEE---CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEE
Q 019603 230 LDAYGGEKRC-GFSLEPSPNTNTEATF---TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 230 ~~~~~~~~~~-~~~~~~~~~~~~~~~f---s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 305 (338)
|++..|+... .+-...+. .-+...| +.+...++--=.|+.+.+.++-++..++.++.|-..|.|-+|-|+-+...
T Consensus 273 wn~~~G~ntl~~~g~~~~n-~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~ 351 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHN-QTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCF 351 (397)
T ss_pred eecccCccccccccccccc-ccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhh
Confidence 9998775432 12111111 1111111 33333343344568999999999999999999999999999999999999
Q ss_pred eecc--eEEEeeeC
Q 019603 306 AASS--VLSFWIPN 317 (338)
Q Consensus 306 s~s~--~~~iw~~~ 317 (338)
+++. ++--|.+.
T Consensus 352 tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 352 TGDMNGNIYMWSPA 365 (397)
T ss_pred ccccCCcccccccc
Confidence 9984 45556553
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3.4e-22 Score=175.85 Aligned_cols=268 Identities=14% Similarity=0.171 Sum_probs=190.2
Q ss_pred ccceeeccCCcceeEEEeecCCCEE-EEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLL-VTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
+....+..|.+ +.++.|+|+|+.+ ++++.|+.|++||..+++.+..+..+ .....+.+++++..++++. ..+
T Consensus 22 ~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~-----~~~ 94 (300)
T TIGR03866 22 EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGKILYIAN-----EDD 94 (300)
T ss_pred ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCCEEEEEc-----CCC
Confidence 34556655544 6789999999976 56778999999999988876654332 2344556666655444332 234
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCC-eEEEEECCCcceeeeeeec-CccEEEEcCCCCEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDH-SVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAV 174 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~-~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 174 (338)
+.+++||+.+.+.+..+.. ...+.++.|+|+++++++++.++ .+.+||.++++....+... ....+.|++++..+++
T Consensus 95 ~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWV 173 (300)
T ss_pred CeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEE
Confidence 7899999998887776653 33468899999999999888775 5677899887765443332 2335789999987755
Q ss_pred E-EcCCeEEEEeCCCCCCCCCeeEEecC-----CCCceEEEEEcCCCCEEEEE-ecCCcEEEEEccCCeeEEEeeeCCCC
Q 019603 175 A-MEAGAIKLFDSRSYDKGPFDTFLVGG-----DTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 175 ~-~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
+ ..++.+++||.++... ...+.... .......+.|+|++++++++ +.++.+.+||..+++...... . .
T Consensus 174 ~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~--~ 248 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-V--G 248 (300)
T ss_pred EcCCCCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-e--C
Confidence 4 4689999999876432 11111110 11123467899999986554 456789999998776654332 1 2
Q ss_pred CCCeeEEECCCCCEEEEE-cCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcC
Q 019603 248 NTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 299 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p 299 (338)
..+..++|+|+|++|+++ +.++.|+|||+.+++++..++.. ...+.|+++|
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 357889999999999886 56999999999999999999764 5669999876
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=7.3e-24 Score=191.79 Aligned_cols=298 Identities=16% Similarity=0.232 Sum_probs=219.9
Q ss_pred HHHHhccccceeeccCCcceeEEEeecC-----------CCEEEEeeCCCcEEEEEcCCCe---e-EeEE----------
Q 019603 11 DETVRSMAMAAIFSDFGGKINSLDFHRK-----------DDLLVTASDDDSVRLYDIVSAK---L-IKTT---------- 65 (338)
Q Consensus 11 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~-----------~~~l~s~s~D~~i~iWd~~~~~---~-~~~~---------- 65 (338)
..+++.-.....+.-|...|+++.--|- -..+.|||.|++||+||++.+. . .+.+
T Consensus 353 vrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y 432 (1080)
T KOG1408|consen 353 VRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPY 432 (1080)
T ss_pred ccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCcc
Confidence 3455666666677789988888875541 1258999999999999997521 1 1110
Q ss_pred -----------------------eecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEE
Q 019603 66 -----------------------YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVIS 122 (338)
Q Consensus 66 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~ 122 (338)
.....++.+++.++++..+..+ .-++.+|++++.+.+....+.+|...|.|
T Consensus 433 ~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG------Dr~GnlrVy~Lq~l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 433 EDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG------DRGGNLRVYDLQELEYTCFMEAHESEILC 506 (1080)
T ss_pred ccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc------CccCceEEEEehhhhhhhheecccceeEE
Confidence 1111244566666665544322 22478999999988888889999999999
Q ss_pred EEEcCC---CCEEEEEECCCeEEEEECCCcc-eeeeeeecCc--cEEEEcCCC--CEEEEEEcCCeEEEEeCCCCCCCCC
Q 019603 123 LCMSPV---NDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGR--PTVAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPF 194 (338)
Q Consensus 123 l~~~~~---~~~l~Sgs~D~~I~iWd~~~~~-~~~~~~~~~~--~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~ 194 (338)
|.|+-- .+.|+|+|.|..|.|+|+..+- .+.++..|.. ..+.|-.+| ..+++++.|+.| +|+... +..-
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~q--k~~~ 583 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQ--KASS 583 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhc--cccC
Confidence 999842 4689999999999999997653 3344444433 346666655 566777777654 344321 1110
Q ss_pred e-eEEec---CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC-CCCCCCeeEEECCCCCEEEEEcCCC
Q 019603 195 D-TFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPDGQYVVSGSGDG 269 (338)
Q Consensus 195 ~-~~~~~---~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~fs~~~~~l~sgs~Dg 269 (338)
. .+..+ -....+.+|...|..+++++++.|++|+||+...|+....|... .+.+....+...|.|-||+|...|+
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence 0 11111 11356889999999999999999999999999999988888775 4446778899999999999999999
Q ss_pred cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 270 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 270 ~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
++-++|..+++++..+.||...|+.+.|.+|.+.|++++ +.|-||+.|
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999999999999999999999999999999999887 468889866
No 103
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.1e-23 Score=190.04 Aligned_cols=291 Identities=18% Similarity=0.272 Sum_probs=207.7
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC--eeEeEE-----eecccCeeeEEEeecCCeeEEecCccCC
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA--KLIKTT-----YHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
..++||.+.|+++.|+|.+..|+|+|.|+++.+|...+. -.+... .+...+.....|+++...+++-+.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~---- 336 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR---- 336 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc----
Confidence 456799999999999999999999999999999987654 222211 111223344555555544443321
Q ss_pred CCCceeEEEEccCC---eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-eeee---eecCc--cEEE
Q 019603 94 STGESLRYLSMYDN---RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGIL---RLRGR--PTVA 164 (338)
Q Consensus 94 ~~~~~i~~~~~~~~---~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~---~~~~~--~~~~ 164 (338)
.+..++|...+. .....+.||.+.|.++.|+|.|++++|.|.|.|=|+|-.-.++. -+.+ +.|+. .+++
T Consensus 337 --~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 337 --TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred --cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence 267889983321 23445689999999999999999999999999999986541111 1111 12332 3455
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCC------------------------------------C-------C-----------
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRS------------------------------------Y-------D----------- 190 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~------------------------------------~-------~----------- 190 (338)
+-+....+++|.+...+|+|+... + .
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 555456777887778888886310 0 0
Q ss_pred -------CCCCe-----------eEEecCCCCceEEEEEcCCCCEEEEEecCC-----cEEEEEccCCeeEEEeeeCCCC
Q 019603 191 -------KGPFD-----------TFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 191 -------~~~~~-----------~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
.+|+. ...+.||..+|.+++.+|+++.+++++... .|++|+...... ...+.+|.
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~~L~~Hs 572 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--VQELEGHS 572 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh--hheecccc
Confidence 00000 011257888999999999999999887654 478888654433 34677888
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC----eEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEeeeCCC
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIPNPS 319 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~~~~~ 319 (338)
-.|+.++|||||+||++.|.|+++.+|+..+.. .....+.|..-|++..|+|+..+||++|. ++++|..+..
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 899999999999999999999999999986432 23347899999999999999999999995 6999987655
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.1e-23 Score=198.82 Aligned_cols=256 Identities=17% Similarity=0.226 Sum_probs=191.1
Q ss_pred eeccCC-cceeEEEeecCCCEEEEee--CCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 22 IFSDFG-GKINSLDFHRKDDLLVTAS--DDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 22 ~~~~h~-~~V~~l~~s~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
.+.+|. ..|.+++.+|+|..++||| .|++++||+.+.-- ..
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl------~~------------------------------ 50 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL------DE------------------------------ 50 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeecccccc------ch------------------------------
Confidence 455674 6689999999999999999 99999999864210 00
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC----c--------------ceeeeeeecCc
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV----N--------------ACQGILRLRGR 160 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~----~--------------~~~~~~~~~~~ 160 (338)
...++..=.+.+.++..|.+.|+|+.|+|||++||+||.|+.|.||+... . ++...+..|..
T Consensus 51 ~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 51 KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS 130 (942)
T ss_pred hhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC
Confidence 00000001234455678999999999999999999999999999998762 0 12222333333
Q ss_pred --cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE
Q 019603 161 --PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 238 (338)
Q Consensus 161 --~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~ 238 (338)
..+.|+|++.++++++.|++|-+|+.+++.. ...+.+|...|-.+.|.|-|+|+++-+.|++++||...+....
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE 206 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEcccccee----eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee
Confidence 2378999999999999999999999988633 2234688999999999999999999999999999985542222
Q ss_pred E----EeeeCCCCCCCeeEEECCCCCEEEEEc----CCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCC-----Cc---
Q 019603 239 C----GFSLEPSPNTNTEATFTPDGQYVVSGS----GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-----RA--- 302 (338)
Q Consensus 239 ~----~~~~~~~~~~~~~~~fs~~~~~l~sgs----~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~-----~~--- 302 (338)
. .|...+....+.++.|||||++|++.. .--++.|.+..+++.-..|-||.+++.+++|+|. ..
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 1 122122334677899999999999853 2336899999999999999999999999999972 11
Q ss_pred ---------eEEeec--ceEEEeeeC
Q 019603 303 ---------MFVAAS--SVLSFWIPN 317 (338)
Q Consensus 303 ---------~l~s~s--~~~~iw~~~ 317 (338)
.+|+|| .++.||...
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecC
Confidence 455565 579999654
No 105
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.5e-25 Score=202.84 Aligned_cols=236 Identities=20% Similarity=0.375 Sum_probs=201.6
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
+.+..|...|.++..-..++.+++|++|..+-||....-..+..+++|..++.++.|+.....+.. .+.+++|+
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaa------gsasgtiK 95 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAA------GSASGTIK 95 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcc------cccCCcee
Confidence 566789999999999888999999999999999999877777788899999999988765443322 24458999
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCe
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGA 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 180 (338)
+||++.++.++++.||...+.++.|+|-+.++++||.|..+++||.|...|...
T Consensus 96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-------------------------- 149 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-------------------------- 149 (825)
T ss_pred eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee--------------------------
Confidence 999999999999999999999999999999999999999999999986555321
Q ss_pred EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC
Q 019603 181 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260 (338)
Q Consensus 181 i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 260 (338)
|+ +|...+..+.|+|+|++++.++.|..+.|||...|+....|. .|...+..+.|+|..-
T Consensus 150 ---~~---------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~--~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 150 ---YK---------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEV 209 (825)
T ss_pred ---ec---------------CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc--cccccccccccCchhh
Confidence 11 244457778899999999999999999999998887766554 4556677888999999
Q ss_pred EEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 261 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
++++||.|+++++||+++-+.+...+.....|.|++|+|++..+.+|.
T Consensus 210 Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 210 LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 999999999999999998888888888889999999999999999886
No 106
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=187.50 Aligned_cols=298 Identities=20% Similarity=0.294 Sum_probs=204.5
Q ss_pred ccccceeeccCCcceeE--EEeecC---CCEEEEeeCCCcEEEEEcCCCee------EeEEeecccCeeeEEEeecCCee
Q 019603 16 SMAMAAIFSDFGGKINS--LDFHRK---DDLLVTASDDDSVRLYDIVSAKL------IKTTYHKKHGADCVCFTHHPSSV 84 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~--l~~s~~---~~~l~s~s~D~~i~iWd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 84 (338)
...++..+..|+-++.- ..|++. ..+|+.+-+||.|.++|...... ++....|...+.-+.+.+ +...
T Consensus 36 gi~~~~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~ 114 (720)
T KOG0321|consen 36 GIAPITSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESL 114 (720)
T ss_pred ccccccccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Ccee
Confidence 33444556667777765 778753 34788899999999999864332 233344444555555555 2222
Q ss_pred EEecCccCCCCCceeEEEEccCCeEEEe--ecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCccee------eee
Q 019603 85 ICSTKYNLDSTGESLRYLSMYDNRILRY--FKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQ------GIL 155 (338)
Q Consensus 85 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~------~~~ 155 (338)
++. .++|.+++.||+...+++.. +.||+..|.+++|.|.+. .|++|+.||.|.|||+|..... ..+
T Consensus 115 lVs-----asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 115 LVS-----ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred EEE-----ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 222 24568999999999988776 999999999999999875 7899999999999998743210 000
Q ss_pred e---------------------ecCc-----cEEEEcCCCCEEEEEEc-CCeEEEEeCCCCCC----CCCeeEEecCC--
Q 019603 156 R---------------------LRGR-----PTVAFDQQGLVFAVAME-AGAIKLFDSRSYDK----GPFDTFLVGGD-- 202 (338)
Q Consensus 156 ~---------------------~~~~-----~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~----~~~~~~~~~~~-- 202 (338)
. .+.. ..+.+..|...+++++. |+.|++||+|...+ .+........+
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence 0 0000 11445667777777776 99999999986432 11111111111
Q ss_pred -CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC--CCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 203 -TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN--TNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 203 -~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
...++++.....|.++++.+.|+.|+.|++.+-.....+...++.. .-..-..+|++++|++|+.|...++|.+++.
T Consensus 270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc
Confidence 3357778888889999999999999999987654433333333322 2223457999999999999999999999976
Q ss_pred C-eEeEeeCCCCceEEEEEcCCCc-eEEeec--ceEEEeeeCCC
Q 019603 280 N-EVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 280 ~-~~~~~~~h~~~v~~l~~~p~~~-~l~s~s--~~~~iw~~~~~ 319 (338)
+ .+..+.+|.-.|++++|.|... -+++++ ..++||...+.
T Consensus 350 e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 350 EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 4 4667889999999999998643 466666 36899976533
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.5e-24 Score=176.86 Aligned_cols=250 Identities=16% Similarity=0.284 Sum_probs=190.9
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeE--eEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLI--KTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
.+++|-.|..+|+++.|+|...+|+||+.|++||++|+..-... ........++.+++|.+.+..++.++. .
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd------H 237 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD------H 237 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC------C
Confidence 46788899999999999999999999999999999999643211 112233467888888777777766543 3
Q ss_pred ceeEEEEccCCeEEEe---ecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee-cCcc---EEEEcCCC
Q 019603 97 ESLRYLSMYDNRILRY---FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-RGRP---TVAFDQQG 169 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~---~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~-~~~~---~~~~~~~~ 169 (338)
.++|+||+.+.++.-. -.+|++.|+++.+++.++..++||.||.||+||--+++|+.++.. |+.. ...|..+|
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG 317 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence 6899999998876443 357999999999999999999999999999999989999887763 4332 35689999
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCC---CceEEEEEcCCCCEEEEEec-CCcEEEEEccCCeeEEEeeeCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT---AEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEP 245 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~~~~~~~~~ 245 (338)
.++++.+.|..+++|.+.+... +..+.-.|.+ ..-+...|+....|++.-.. .+.+.-||.+++.....+. .+
T Consensus 318 kyiLsSG~DS~vkLWEi~t~R~--l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-lg 394 (430)
T KOG0640|consen 318 KYILSSGKDSTVKLWEISTGRM--LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-LG 394 (430)
T ss_pred eEEeecCCcceeeeeeecCCce--EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-cC
Confidence 9999999999999999876432 3233322221 12233446666666665443 4678889988776654333 47
Q ss_pred CCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 246 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
|++.+..+.-||.+.-++|+|.|..+|+|-.+
T Consensus 395 Hn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 395 HNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 77888889999999999999999999999754
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=6.2e-24 Score=185.39 Aligned_cols=246 Identities=17% Similarity=0.304 Sum_probs=190.0
Q ss_pred cceeecc--CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 19 MAAIFSD--FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 19 ~~~~~~~--h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
+++.|.- -++-|.++.+.|||+.|++||.-.++.|||+..............+..|.++...++..++.+. .++
T Consensus 455 PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsc----csd 530 (705)
T KOG0639|consen 455 PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSC----CSD 530 (705)
T ss_pred ccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeee----ccC
Confidence 4555543 3567889999999999999999999999999876543322333333344444444554444332 345
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec-CccEEEEcCCCCEEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVA 175 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (338)
+.|.+||+.+...++.|+||++.+.||.++++|..|.|||.|.+||.||+|.+.......+. ....+..+|++..+++|
T Consensus 531 GnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 531 GNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred CcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence 89999999999999999999999999999999999999999999999999987653222221 22346678999999999
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
.+.+.+.+.-.... +.+.+.-|...|..+.|.+.|+++++.+.|+.+-.|..--|..+ |+... ...|.++..
T Consensus 611 Mens~vevlh~skp-----~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi--FqskE-~SsVlsCDI 682 (705)
T KOG0639|consen 611 MENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKE-SSSVLSCDI 682 (705)
T ss_pred cccCcEEEEecCCc-----cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce--eeccc-cCcceeeee
Confidence 99999988765432 23445567788999999999999999999999999977666544 34333 357999999
Q ss_pred CCCCCEEEEEcCCCcEEEEEC
Q 019603 256 TPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~ 276 (338)
|.|++|++|||.|+...||.+
T Consensus 683 S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 683 SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceEEEecCCCcceEEEEE
Confidence 999999999999999888875
No 109
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.9e-22 Score=165.32 Aligned_cols=250 Identities=14% Similarity=0.254 Sum_probs=177.6
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
-.+|++-|.++.|++-|+.++|||.|.+++|||......
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~----------------------------------------- 47 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG----------------------------------------- 47 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------------------------
Confidence 358999999999999999999999999999999743211
Q ss_pred EccCCeEEEeecCCccceEEEEEcC--CCCEEEEEECCCeEEEEECC--Cccee-------eeeeec--CccEEEEcC--
Q 019603 103 SMYDNRILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLR--VNACQ-------GILRLR--GRPTVAFDQ-- 167 (338)
Q Consensus 103 ~~~~~~~~~~~~~H~~~V~~l~~~~--~~~~l~Sgs~D~~I~iWd~~--~~~~~-------~~~~~~--~~~~~~~~~-- 167 (338)
+..+....+.|.+.|..+.|.+ -|+.+|++|.|++++||.-. ..++. .++... ....+.|.|
T Consensus 48 ---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h 124 (361)
T KOG2445|consen 48 ---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH 124 (361)
T ss_pred ---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh
Confidence 0012233578999999999954 37899999999999999752 11110 111111 112367777
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCC-------CCeeE--EecCCCCceEEEEEcCC---CCEEEEEecC-----CcEEEE
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKG-------PFDTF--LVGGDTAEVCDIKFSND---GKSMLLTTTN-----NNIYVL 230 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~-------~~~~~--~~~~~~~~i~~v~~sp~---~~~i~~~~~d-----~~i~i~ 230 (338)
.|..+++++.||++|||+.-..-.- .+... ..+.+.....|+.|+|. ..+|++++.+ +.++||
T Consensus 125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence 5789999999999999974321100 00000 01123456778899985 3456666654 378888
Q ss_pred EccCC--eeEEEeeeCCCCCCCeeEEECCCC----CEEEEEcCCCcEEEEECCCC--------------------CeEeE
Q 019603 231 DAYGG--EKRCGFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTR--------------------NEVAC 284 (338)
Q Consensus 231 ~~~~~--~~~~~~~~~~~~~~~~~~~fs~~~----~~l~sgs~Dg~i~vWd~~~~--------------------~~~~~ 284 (338)
....+ +....-++..+..+|++++|.|+- .+||+++.|| |+||++... +.+..
T Consensus 205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred EecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 65433 333444556788899999999973 5799999999 999998731 13445
Q ss_pred eeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 285 WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 285 ~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+..|.+.|+.++|+-.|..|++.+ +.+++|+.+
T Consensus 284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 779999999999999999999986 679999854
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.8e-23 Score=179.02 Aligned_cols=240 Identities=18% Similarity=0.269 Sum_probs=189.8
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc-
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY- 105 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 105 (338)
-|+|.++.-+|+|.+|+.|..-+.|.+|.+.+|.++..+..|-..+.|+.|+.++..++.+++ |+.+.+|.+-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk------Dg~V~vW~l~~ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK------DGAVLVWLLTD 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC------CccEEEEEEEe
Confidence 478999999999999999989999999999999998887777788999999998888876544 4788999873
Q ss_pred --------CCeEEEeecCCccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEE
Q 019603 106 --------DNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAV 174 (338)
Q Consensus 106 --------~~~~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 174 (338)
+-++...|..|+-+|+++...+. +.+++|+|.|.++|+||+..+..+.++.+.. ...+.++|-+.++.+
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI 234 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe
Confidence 23567889999999999988765 4589999999999999999998877666544 456889999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
|+.+|.|.+.++..... ....+..=.++++ +.....+.++.....|++++
T Consensus 235 Gt~~G~I~~~~~~~~~~----------~~~~v~~k~~~~~--------------------~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSG----------QSAGVNQKGRHEE--------------------NTQINVLVGHENESAITCLA 284 (476)
T ss_pred cCCcceEEeeehhcCCc----------ccccccccccccc--------------------cceeeeeccccCCcceeEEE
Confidence 99999999887643210 0000110011211 22222233333334899999
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
.+-||..|++|++||.|.|||+.+.++++++....++|+.|++.|=.+
T Consensus 285 is~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 999999999999999999999999999999987789999999977544
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-23 Score=189.36 Aligned_cols=272 Identities=20% Similarity=0.319 Sum_probs=195.3
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE--EeecccC-----eeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT--TYHKKHG-----ADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
++..+++..+++-..++.+|. ..++||.......... ....... +.-+.|...-+..+. + .+.-+.|
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIA-T----~s~nG~i 112 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIA-T----CSTNGVI 112 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhhe-e----ecCCCcE
Confidence 456677778898888888875 5688887653221100 1101111 111122211111111 1 2344789
Q ss_pred EEEEccC---CeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcC-CCCEE
Q 019603 100 RYLSMYD---NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQ-QGLVF 172 (338)
Q Consensus 100 ~~~~~~~---~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~-~~~~~ 172 (338)
-+||+.. .+.+..|..|...|+++.|++.. .+|+|||.||+||+||+|..+...++.... ..-+.|+| .+..|
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceE
Confidence 9999976 56677899999999999999875 578999999999999999887665555433 23488887 46789
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
+++...|++++||+|....- .+.+..|++.|.++.|+|++.+|++||.|++|+||++.+++........ .-.++.+
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~---~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~r 268 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRC---EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGR 268 (839)
T ss_pred EEecCCceEEEeeccCchhH---HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeee
Confidence 99999999999999975432 1234579999999999999999999999999999999877654444332 2246889
Q ss_pred EEECCCCCE-EEEEc--CCCcEEEEECCCCC-eEeEeeCCCCceEEEEEcC-CCceEEeec
Q 019603 253 ATFTPDGQY-VVSGS--GDGTLHAWNINTRN-EVACWNGNIGVVACLKWAP-RRAMFVAAS 308 (338)
Q Consensus 253 ~~fs~~~~~-l~sgs--~Dg~i~vWd~~~~~-~~~~~~~h~~~v~~l~~~p-~~~~l~s~s 308 (338)
+.|-|..++ ||+++ .|-.|+|||++.+- +-.+|..|...++.++|-. |...+.+++
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCS 329 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeec
Confidence 999998776 66654 68899999998764 4557889999999999976 445677776
No 112
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.3e-22 Score=180.60 Aligned_cols=287 Identities=16% Similarity=0.233 Sum_probs=209.6
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc---------
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN--------- 91 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
..|.||++.|.++...|.|.+|+|||.||++|||.+.+|+|+++.... ..+.+++|.+.+..-+.+....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 367899999999999999999999999999999999999999886554 4678888877665433221100
Q ss_pred C-------------C------CCCceeEEEEccCCe----EEEeecCCccceEEEEEcCCCCEEEEEECC---CeEEEEE
Q 019603 92 L-------------D------STGESLRYLSMYDNR----ILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWD 145 (338)
Q Consensus 92 ~-------------~------~~~~~i~~~~~~~~~----~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---~~I~iWd 145 (338)
+ . .-+..+-.|.-.+.+ -+...-.|.+.|..+.|+..|.||++...| +.|.|.+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 0 0 001233455443211 133445699999999999999999876554 6789999
Q ss_pred CCCcceeeeeeecC--ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec
Q 019603 146 LRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 223 (338)
Q Consensus 146 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~ 223 (338)
+..+..+.-|.... ...+.|+|...+++++++ ..++|||+-... +...+. .....|..++.+|.|..+++++.
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe---lvKkL~-tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE---LVKKLL-TGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH---HHHHHh-cCCeeeeeeeecCCCCeEEEecC
Confidence 97766554454332 235789998888888876 589999975421 111111 22456889999999999999999
Q ss_pred CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC-------CC--CeEeEeeCCCCc---
Q 019603 224 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-------TR--NEVACWNGNIGV--- 291 (338)
Q Consensus 224 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~-------~~--~~~~~~~~h~~~--- 291 (338)
|+.+..+|+..+.+.. ..+..|...+.+++|++.-.+++||+.||++.|+.-. +. -+++.+.+|...
T Consensus 628 d~k~~WfDldlsskPy-k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~ 706 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPY-KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL 706 (733)
T ss_pred CCeeEEEEcccCcchh-HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence 9999999987654321 1234556778999999999999999999999999632 11 235667788655
Q ss_pred -eEEEEEcCCCceEEeec--ceEEEe
Q 019603 292 -VACLKWAPRRAMFVAAS--SVLSFW 314 (338)
Q Consensus 292 -v~~l~~~p~~~~l~s~s--~~~~iw 314 (338)
|....|||...+|++++ ++|++|
T Consensus 707 gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 707 GVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeecccCCCceEEecCCCceEEee
Confidence 88889999999999986 578888
No 113
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=166.25 Aligned_cols=284 Identities=17% Similarity=0.362 Sum_probs=194.6
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEEEcCCCee-----------EeEEeecccC--eeeEEE-ee----cCCeeEEecCccC
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLYDIVSAKL-----------IKTTYHKKHG--ADCVCF-TH----HPSSVICSTKYNL 92 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~-----------~~~~~~~~~~--~~~~~~-~~----~~~~~~~~~~~~~ 92 (338)
.++.|+|||..|++-+.|..+.+|++...-. .........+ +...+| +. .|+.-+.+ .
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a----~ 128 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA----V 128 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee----e
Confidence 4678999999999999999999999842110 0001111112 222222 11 12221211 1
Q ss_pred CCCCceeEEEEccCCeEEEeecC--CccceE---EEEEcCCCCEEEEEECCCeEEEEEC-CCcceeeee--eec------
Q 019603 93 DSTGESLRYLSMYDNRILRYFKG--HKERVI---SLCMSPVNDSFMSGSLDHSVRIWDL-RVNACQGIL--RLR------ 158 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~--H~~~V~---~l~~~~~~~~l~Sgs~D~~I~iWd~-~~~~~~~~~--~~~------ 158 (338)
.+-+.-|++||..+|+....+.+ |.+.++ +|+|+|||.+|.. |...+||+||+ |.+...... ..+
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 23456799999999998887765 666654 6899999999886 45689999999 555421111 111
Q ss_pred Cc-cEEEEcCCC-CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccCC
Q 019603 159 GR-PTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGG 235 (338)
Q Consensus 159 ~~-~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~ 235 (338)
+. .+++|+|.. ..+++++-...+-|+.-.. ..+ .+++.+|.+.|+.++|.++|+.+.+++. +..|..||++..
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~p--l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRP--LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCC--CCc--eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 11 346788855 4888888777776765321 223 3456689999999999999999999886 778999998643
Q ss_pred eeEEEeeeCCCCC-CCeeE--EECCCCCEEEEEcCCCcEEEEECCC-CCeEeEeeCCCCceEEEEEcCCCceEEeecceE
Q 019603 236 EKRCGFSLEPSPN-TNTEA--TFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAASSVL 311 (338)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~--~fs~~~~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~ 311 (338)
. ...+.+.+|.. ...++ ...|++++|++|+.||.|++||+.+ +..+..+..|...|+.++++|--+++|++++.
T Consensus 284 ~-~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq- 361 (406)
T KOG2919|consen 284 R-DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ- 361 (406)
T ss_pred c-chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc-
Confidence 2 22345555543 33444 4568999999999999999999998 67788889999999999999998888887764
Q ss_pred EEeeeCCCCCCCCC
Q 019603 312 SFWIPNPSSNSTDE 325 (338)
Q Consensus 312 ~iw~~~~~~~~~~~ 325 (338)
+++..+...+..+.
T Consensus 362 r~f~~~~dD~ge~~ 375 (406)
T KOG2919|consen 362 RIFKYPKDDNGELE 375 (406)
T ss_pred eeecCCCccccccc
Confidence 34555544444333
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.7e-23 Score=186.40 Aligned_cols=222 Identities=16% Similarity=0.268 Sum_probs=184.0
Q ss_pred CCCceeEEEEccC--Ce----EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeeeeeecCc--cEE
Q 019603 94 STGESLRYLSMYD--NR----ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGR--PTV 163 (338)
Q Consensus 94 ~~~~~i~~~~~~~--~~----~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~--~~~~~~~~~~~--~~~ 163 (338)
+.++.|++|+... ++ .+..+..|.+.|+.+....+++.|+|+|.|-+|++|+...+ -|..++..|.. .++
T Consensus 44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 3458999999853 22 36678899999999999999999999999999999999776 57777766554 456
Q ss_pred EE-cCCCCEEEEEEcCCeEEEEeCCCCCC---CCCe---e-EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC
Q 019603 164 AF-DQQGLVFAVAMEAGAIKLFDSRSYDK---GPFD---T-FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 164 ~~-~~~~~~~~~~~~dg~i~i~d~~~~~~---~~~~---~-~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~ 235 (338)
+. .++...+++|+-|+.|.+||+.+... ..+. . -+..|+...|.+++.++.|..++.|+.++.+++||-++.
T Consensus 124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence 65 67888999999999999999885422 0011 1 122267788999999999999999999999999999888
Q ss_pred eeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEEee
Q 019603 236 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 315 (338)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~ 315 (338)
+++..+ .+|...|..+..++||..++|+|+||+|++||+..++++.++..|...||++.-+|+-..+.+|+....|..
T Consensus 204 ~kimkL--rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 204 KKIMKL--RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred cceeee--eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 766544 478888999999999999999999999999999999999999999999999999999999999987655554
Q ss_pred eC
Q 019603 316 PN 317 (338)
Q Consensus 316 ~~ 317 (338)
.+
T Consensus 282 Td 283 (735)
T KOG0308|consen 282 TD 283 (735)
T ss_pred cc
Confidence 33
No 115
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.1e-22 Score=172.18 Aligned_cols=223 Identities=17% Similarity=0.313 Sum_probs=168.4
Q ss_pred CCCceeEEEEccCCe--E--------EEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCccee-------eee
Q 019603 94 STGESLRYLSMYDNR--I--------LRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQ-------GIL 155 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~--~--------~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~-------~~~ 155 (338)
+.++.+.+||...-. . --.++||++.-++|+|++... .++||+.|++|++||+...... ..+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 345779999985421 1 126889999889999998755 7999999999999999754321 122
Q ss_pred eecCc--cEEEEcCC-CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCE-EEEEecCCcEEEEE
Q 019603 156 RLRGR--PTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLD 231 (338)
Q Consensus 156 ~~~~~--~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~-i~~~~~d~~i~i~~ 231 (338)
..+.. .-++|.+. ...|++++.|+.+.|||.|+. ..+. .....+|...+.|++|+|.+.+ ||+++.|++|.+||
T Consensus 224 ~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~-~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 224 SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKP-SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred ecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCC-cccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 22322 23678774 458889999999999999973 2111 2334578999999999997665 56777799999999
Q ss_pred ccCCeeEEEeeeCCCCCCCeeEEECCCC-CEEEEEcCCCcEEEEECCCCC--------------eEeEeeCCCCceEEEE
Q 019603 232 AYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRN--------------EVACWNGNIGVVACLK 296 (338)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~~--------------~~~~~~~h~~~v~~l~ 296 (338)
++.-+. ..+.+.+|...+.++.|||+. ..|||+++|+.+.|||+..-. ++..-.||...|..+.
T Consensus 302 lRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 302 LRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS 380 (422)
T ss_pred chhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccccc
Confidence 976544 567788888999999999976 468899999999999997421 2344569999999999
Q ss_pred EcCCCceEEe-ec--ceEEEeeeCCC
Q 019603 297 WAPRRAMFVA-AS--SVLSFWIPNPS 319 (338)
Q Consensus 297 ~~p~~~~l~s-~s--~~~~iw~~~~~ 319 (338)
|+|..+++++ ++ ..+.||+++..
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeecccc
Confidence 9999986555 44 46899987743
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.7e-22 Score=173.53 Aligned_cols=245 Identities=19% Similarity=0.339 Sum_probs=183.7
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCC--CeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVS--AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
.+.|+++.|+|.-.+|++||.|++++||.+.. ...+.++.....++.+.+|.+.+...++.+.. -.....||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeec
Confidence 37799999999999999999999999998753 34667777778888888998887744443321 123455555
Q ss_pred cCCe---------------------------------------------EEEeecCCccceEEEEEcCCCCEEEEEECCC
Q 019603 105 YDNR---------------------------------------------ILRYFKGHKERVISLCMSPVNDSFMSGSLDH 139 (338)
Q Consensus 105 ~~~~---------------------------------------------~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~ 139 (338)
.+++ .+..++ -.+.|..+.|+.+++.|+.++.+|
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCc
Confidence 4432 222221 246688999999999999999999
Q ss_pred eEEEEECCCcceeeeeeecCc---cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCC--CCCeeEEecCCCCceEEEEEcCC
Q 019603 140 SVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK--GPFDTFLVGGDTAEVCDIKFSND 214 (338)
Q Consensus 140 ~I~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~v~~sp~ 214 (338)
.|.+||++...|+..+...+. ..++.++++.++|+|+..|.|.|||..+.-. .|.-...+..-+..|+.+.|+||
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999999999988887654 4578889999999999999999999654211 11111112233567999999999
Q ss_pred CCEEEEEec--CCcEEEEEccCCeeEEEeeeCCCC-CCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 215 GKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 215 ~~~i~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.+.++.++. .+.+++..+.+-.....|+....+ ..+++++|||.+.|||.|-++|.+.+|.+.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 998887775 567888887655554445444222 578999999999999999999999999874
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=170.30 Aligned_cols=282 Identities=17% Similarity=0.270 Sum_probs=196.3
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
.|.|.|.+|..-.+|++ +||+.|+.|..||-.-.+......+...+..-+.....+. ++.++.. +.|--=.+
T Consensus 285 aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d-i~vGTtr------N~iL~Gt~ 356 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD-ILVGTTR------NFILQGTL 356 (626)
T ss_pred ecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCc-EEEeecc------ceEEEeee
Confidence 89999999999988876 5599999999999432222222222222222222222222 3333221 22222222
Q ss_pred cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeee-eecCccEEEEcCCCCEEEEEEcCCeEEE
Q 019603 105 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL-RLRGRPTVAFDQQGLVFAVAMEAGAIKL 183 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~i~i 183 (338)
.+ .......+|.+..+.++.+|+.+++++++.|+.+++|+ ..+.+-+. ......++.|+|.| .+++|...|...+
T Consensus 357 ~~-~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 357 EN-GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFV 432 (626)
T ss_pred cC-CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEE
Confidence 22 23345578999999999999999999999999999999 33433332 23455678999999 9999999999999
Q ss_pred EeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC-eeEEEeeeCCCCCCCeeEEECCCCCEE
Q 019603 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYV 262 (338)
Q Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~fs~~~~~l 262 (338)
.|.++. +...+...+.++++|+|+|+|.++++++.|+.|++|-...+ .+....... +-..++.+.||+|++||
T Consensus 433 ~d~e~~-----~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 433 LDTETQ-----DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-SGSPITHLDWSSDSQFL 506 (626)
T ss_pred Eecccc-----eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-cCceeEEeeecCCCceE
Confidence 997652 12333334788999999999999999999999999976543 333322222 22789999999999999
Q ss_pred EEEcCCCcEEEEECCCCCeEeE--------------e----eCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCCCCC
Q 019603 263 VSGSGDGTLHAWNINTRNEVAC--------------W----NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 322 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~~~~~--------------~----~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~~~~ 322 (338)
.+-+.|-.|-.|.-..-+.... | -.|...|+.++-+....++|+|+ +.+.++.+|+.++-
T Consensus 507 ~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred EeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 9999999999995443222111 1 14556677777788888999998 57889988877655
Q ss_pred CC
Q 019603 323 TD 324 (338)
Q Consensus 323 ~~ 324 (338)
..
T Consensus 587 A~ 588 (626)
T KOG2106|consen 587 AP 588 (626)
T ss_pred cc
Confidence 43
No 118
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=181.49 Aligned_cols=300 Identities=23% Similarity=0.373 Sum_probs=219.2
Q ss_pred HHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE-EeecccCeeeEEEeec-CCeeEEecC
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT-TYHKKHGADCVCFTHH-PSSVICSTK 89 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 89 (338)
..+..+.+...|..|.|.|+.|.|+..|+.|+|||+|..|.+||+..++.... ..+|...+-...|-+. +...+.
T Consensus 127 ~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~--- 203 (559)
T KOG1334|consen 127 LFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV--- 203 (559)
T ss_pred HHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce---
Confidence 35667778889999999999999999999999999999999999988775433 3344444433333222 111111
Q ss_pred ccCCCCCceeEEEEccC-CeE--EEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeec---Cc--
Q 019603 90 YNLDSTGESLRYLSMYD-NRI--LRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLR---GR-- 160 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~-~~~--~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~---~~-- 160 (338)
..+.++.+++=.+.. +.+ .+.+..|.+.|..++..|+.. .|.|+|.|+.++-.|++.+.....+... ..
T Consensus 204 --~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 204 --TSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred --eccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 123346666655532 222 334567999999999999876 5899999999999999987654333321 11
Q ss_pred ---cEEEEcCCC-CEEEEEEcCCeEEEEeCCCCCCCC----Ce----eEEecCCCCceEEEEEcCCCCEEEEEecCCcEE
Q 019603 161 ---PTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGP----FD----TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228 (338)
Q Consensus 161 ---~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~----~~----~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~ 228 (338)
..++.+|-. ..++++..|..+++||.|.....+ ++ ..+.......|+++.|+.++.-++++-.|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 235667755 489999999999999988755432 11 123334566799999998888888888888999
Q ss_pred EEEccCCee-------------EEEeeeCCCCCCCeeEE-ECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEE
Q 019603 229 VLDAYGGEK-------------RCGFSLEPSPNTNTEAT-FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC 294 (338)
Q Consensus 229 i~~~~~~~~-------------~~~~~~~~~~~~~~~~~-fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~ 294 (338)
++....+.- .+.|.++....+|..+- |.|...|++|||.-|.|.||+-.+++.+..+++....|+|
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC 441 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC 441 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec
Confidence 995432211 11244455555666665 5789999999999999999999999999999988889999
Q ss_pred EEEcCCCceEEeec--ceEEEeee
Q 019603 295 LKWAPRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 295 l~~~p~~~~l~s~s--~~~~iw~~ 316 (338)
|.=||--+.||+.+ ..||||.+
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cCCCCCCchhhccCCccceeeecC
Confidence 99999999999987 47999954
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.2e-21 Score=159.71 Aligned_cols=214 Identities=15% Similarity=0.201 Sum_probs=170.7
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCC--EEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCC
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVND--SFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQG 169 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~--~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~ 169 (338)
+++.+|++||+.....+..+..|++.|+++.|.+.-. .|+||+.||.|.+|+...-++.+.++.+... -++++|.|
T Consensus 60 ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred CCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC
Confidence 5678999999999999999999999999999998754 8999999999999999999999999887654 37899999
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
.+.++.+.|+.+++||+-.+..... ..+ .+. -+.+.|+|.|.++++++. +.|-+|.+....... ....+..
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v-~~L--~~~--at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~---~i~~~~r 210 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFV-LNL--KNK--ATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFR---EIENPKR 210 (362)
T ss_pred ceEEEEcCCceeeeehhhcCcccee-ecc--CCc--ceeeEEcCCCCEEEEEec-cEEEEEecccHhHhh---hhhcccc
Confidence 9999999999999999765543211 111 122 233889999998887775 577888765443322 2222234
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEE--cCCCceEEeec--ceEEEeeeC
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW--APRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~--~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+.++.|- ++.+|++|++|+.|++||.++..+...+.+|...|.++.+ +|++.+|+++| +.|++|+.+
T Consensus 211 ~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 211 ILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 5556664 6789999999999999999999999999999999999884 47788999997 579999755
No 120
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=178.47 Aligned_cols=288 Identities=18% Similarity=0.268 Sum_probs=204.0
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE--EeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT--TYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
...+..|.+.|..+.|-|....|++++.|.++++||+.++++... +.+|...+..+||......+++.. +-++
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG-----gRDg 167 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG-----GRDG 167 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeec-----cCCC
Confidence 456678999999999999666899999999999999999988766 677777888899988777777653 3458
Q ss_pred eeEEEEccCCe---------------------------EEEeecCCccceEE---EEEcCCCCEEEEEEC-CCeEEEEEC
Q 019603 98 SLRYLSMYDNR---------------------------ILRYFKGHKERVIS---LCMSPVNDSFMSGSL-DHSVRIWDL 146 (338)
Q Consensus 98 ~i~~~~~~~~~---------------------------~~~~~~~H~~~V~~---l~~~~~~~~l~Sgs~-D~~I~iWd~ 146 (338)
.+.+||+.-.. .+...++|.+.|.+ +-+..|...|||+|. |+.||+||+
T Consensus 168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL 247 (720)
T ss_pred cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence 89999985322 01223445555665 556678889999988 999999999
Q ss_pred CCcceeeeee------e-------cCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCC--CceEEEEE
Q 019603 147 RVNACQGILR------L-------RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT--AEVCDIKF 211 (338)
Q Consensus 147 ~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~v~~ 211 (338)
++..+..... . .+...+..+..|.++.+.+.|+.|..|+++.....+...+. ++. ..-..-..
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s--g~~~~sf~vks~l 325 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS--GKLNSSFYVKSEL 325 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc--Ccccceeeeeeec
Confidence 9876532211 1 11223566777888888888999999999987766543321 111 11122347
Q ss_pred cCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCC-CEEEEEcCCCcEEEEECCCCCe---------
Q 019603 212 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNE--------- 281 (338)
Q Consensus 212 sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~--------- 281 (338)
+|++.++++++.|...++|.+...+. ....+.+|...|+.++|.|.. .-++|+++|..++||++..+-.
T Consensus 326 Spd~~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s 404 (720)
T KOG0321|consen 326 SPDDCSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDS 404 (720)
T ss_pred CCCCceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccch
Confidence 89999999999999999998765432 223445777889999998753 3467779999999999965321
Q ss_pred -----EeEeeCCCCceEEEEEcCCCceEEeecceEEEee
Q 019603 282 -----VACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 315 (338)
Q Consensus 282 -----~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~ 315 (338)
...|++|...+-.+.|+-.+.+....=.-.++|-
T Consensus 405 ~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR~~~~r~~s 443 (720)
T KOG0321|consen 405 IVYEYSRRFKGHLPQVLNVNSSLRKTYKDPREGMNRISS 443 (720)
T ss_pred hhhhhhhhhhccccccccccccccccccchhhhcccccc
Confidence 3346777777777777665555544312234453
No 121
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.4e-22 Score=164.81 Aligned_cols=236 Identities=21% Similarity=0.401 Sum_probs=176.7
Q ss_pred eeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE
Q 019603 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 30 V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
.+++.|++.|.+|++|..||.|.|||+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------ 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------ 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence 78999999999999999999999999865321
Q ss_pred EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc----------------------c------
Q 019603 110 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----------------------P------ 161 (338)
Q Consensus 110 ~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~----------------------~------ 161 (338)
.+.+.+|..+|++++|+++|+.|+|+|.|..|++||+..+.+.+.+.+... +
T Consensus 58 ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s 137 (405)
T KOG1273|consen 58 ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS 137 (405)
T ss_pred hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence 122567999999999999999999999999999999988877655443210 0
Q ss_pred --------------------EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEE
Q 019603 162 --------------------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 221 (338)
Q Consensus 162 --------------------~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~ 221 (338)
...|++.|.++.+|...|.+.++|..+.++ ...+.+.. ...|-.+.++..|+.++.-
T Consensus 138 ~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~--vas~rits-~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 138 DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC--VASFRITS-VQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred CCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee--eeeeeech-heeeeEEEEeccCcEEEEe
Confidence 012566789999999999999999876543 22222211 3567788999999999999
Q ss_pred ecCCcEEEEEccCC-------eeEEEeeeC--CCCCCCeeEEECCCCCEEEEEcCC-CcEEEEECCCCCeEeEeeCCC-C
Q 019603 222 TTNNNIYVLDAYGG-------EKRCGFSLE--PSPNTNTEATFTPDGQYVVSGSGD-GTLHAWNINTRNEVACWNGNI-G 290 (338)
Q Consensus 222 ~~d~~i~i~~~~~~-------~~~~~~~~~--~~~~~~~~~~fs~~~~~l~sgs~D-g~i~vWd~~~~~~~~~~~~h~-~ 290 (338)
+.|+.|+.++...- +....+.+. -....=..++||.+|.|+..|+.- -.++||.-..|.+++.|.|.. .
T Consensus 215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE 294 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE 294 (405)
T ss_pred cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh
Confidence 99999999986411 110000000 000112468999999999887633 359999999999999998877 5
Q ss_pred ceEEEEEcCCCceEEeec-ceEEEeee
Q 019603 291 VVACLKWAPRRAMFVAAS-SVLSFWIP 316 (338)
Q Consensus 291 ~v~~l~~~p~~~~l~s~s-~~~~iw~~ 316 (338)
....+.|+|-.+.+++-. +.+.+|..
T Consensus 295 ~l~DV~whp~rp~i~si~sg~v~iw~~ 321 (405)
T KOG1273|consen 295 ELLDVNWHPVRPIIASIASGVVYIWAV 321 (405)
T ss_pred heeecccccceeeeeeccCCceEEEEe
Confidence 678899999999999864 78999963
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=7.4e-23 Score=172.16 Aligned_cols=243 Identities=18% Similarity=0.327 Sum_probs=173.0
Q ss_pred eEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEE
Q 019603 63 KTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVR 142 (338)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~ 142 (338)
..+.+|..+|.|++-.++.-..+ + ..+.++.+++||+...+++.++++|.+.|.+|.++. ..++|+|.|++|+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~-a----SGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTV-A----SGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred hhccccccccchhhcCcchhhhh-h----ccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 34455556666665544321111 1 124468999999999999999999999999999986 7899999999999
Q ss_pred EEECCC---------------------------cceeeeeee-------------cCccEEEEcCCCC-EEEEEEcCCeE
Q 019603 143 IWDLRV---------------------------NACQGILRL-------------RGRPTVAFDQQGL-VFAVAMEAGAI 181 (338)
Q Consensus 143 iWd~~~---------------------------~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~dg~i 181 (338)
.|-+.. |+.+.++.. +...++.|+|... +|+++..|+.|
T Consensus 133 ~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 133 QWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred eeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 997321 111111111 0112356777554 67778899999
Q ss_pred EEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
-+||+|... |+....+... -+.++|+|.+-.+.++..|..++.+|++.-+. .......|-+.++++.|||.|+-
T Consensus 213 vLyD~R~~~--Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 213 VLYDLRQAS--PLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-PLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred EEEecccCC--ccceeeeecc---ccceecCccccceeeccccccceehhhhhhcc-cchhhcccceeEEEeccCCCcch
Confidence 999999743 4444444333 34567999777788888899999999864321 11223356677899999999999
Q ss_pred EEEEcCCCcEEEEECCCCCeEeEe-eCCCCceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 262 VVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 262 l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
++|||-|++||||+++.+..-..+ ...-..|.|+.||.|.+++++|| +++++|....
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 999999999999999977554333 11235699999999999999998 5799997653
No 123
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2.3e-22 Score=176.11 Aligned_cols=210 Identities=18% Similarity=0.309 Sum_probs=158.8
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc----eeeeee---ecCccEEEEcCCCCEEEEEEcCCe
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA----CQGILR---LRGRPTVAFDQQGLVFAVAMEAGA 180 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~dg~ 180 (338)
.+.-.+++|+..|.++++.|.|-.|+|||.|.+|++||+..-. ..+.+. .|...++.+++.|.++++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 3445688999999999999999999999999999999985321 111222 234466899999999999998889
Q ss_pred EEEEeCCCCCC-----CC---CeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeE-EEeee---CCCC
Q 019603 181 IKLFDSRSYDK-----GP---FDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKR-CGFSL---EPSP 247 (338)
Q Consensus 181 i~i~d~~~~~~-----~~---~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~-~~~~~---~~~~ 247 (338)
.+++|-.-... +. .+.....||...+++.+|+|+.+ .+++++.|++++||++...+.. ..+.- .+..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99998332111 00 11223357888999999999865 6889999999999998654322 11211 2334
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe---EeEeeCCCC--ceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~---~~~~~~h~~--~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
..++.++|+++|+++|+|..||+|.+|+..+.-. ...-++|.+ .|+||.||+||++|++=+ .++++|...
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 5788999999999999999999999999865422 233468887 999999999999999976 689999744
No 124
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=9.5e-22 Score=170.11 Aligned_cols=240 Identities=16% Similarity=0.182 Sum_probs=184.1
Q ss_pred ccccceee-ccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 16 SMAMAAIF-SDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 16 ~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
.|.+...- .+|...|.+++.+|||+||++|+.|+.|.||+.++...++.+.+|...|..++|...+..++.+ +
T Consensus 190 ~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~------s 263 (479)
T KOG0299|consen 190 HGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA------S 263 (479)
T ss_pred ccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee------e
Confidence 34444444 3999999999999999999999999999999999999999889999999999998777776654 3
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVF 172 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (338)
.+.++++|++.....+.++-||++.|.++....-.+.+-.|+.|+++++|++.... .-++..+.. .+++| -+...+
T Consensus 264 ~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~-In~~Hf 341 (479)
T KOG0299|consen 264 ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAF-INDEHF 341 (479)
T ss_pred cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEE-ecccce
Confidence 35899999999999999999999999999887777777778899999999994332 223443332 23433 345689
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEe----------cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee-EEEe
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLV----------GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGF 241 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~-~~~~ 241 (338)
++|+.+|.|.+|++-..+ |+-.... ..++..|+.+...|...++++++.+|.+++|....|-. +..+
T Consensus 342 vsGSdnG~IaLWs~~KKk--plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l 419 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLKKK--PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL 419 (479)
T ss_pred eeccCCceEEEeeecccC--ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee
Confidence 999999999999975422 2211110 01234799999999999999999999999999877721 1122
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEE
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sg 265 (338)
.-..-.+.|+.++|+++|+.+++|
T Consensus 420 ~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 420 YSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eecccccEEEEEEEccCCCEEEEe
Confidence 222244679999999999977766
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=4.3e-22 Score=173.96 Aligned_cols=274 Identities=14% Similarity=0.177 Sum_probs=211.2
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC---eeEeEEee--cccCeeeEEEeecCCeeEEecCccCCC
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA---KLIKTTYH--KKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
+++| .|+.-|-++.++...++++|||. |-|||||+... ..+..+.. ....+..+.+.+++..++.+.
T Consensus 413 ~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG------ 484 (705)
T KOG0639|consen 413 INTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG------ 484 (705)
T ss_pred hhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc------
Confidence 3344 89999999999999999999986 66999999532 11111111 122344445555655555432
Q ss_pred CCceeEEEEccCCeE--EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec--CccEEEEcCCCC
Q 019603 95 TGESLRYLSMYDNRI--LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGL 170 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~--~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~ 170 (338)
...++-+||+..... -..+..-.-....|+.+||.+...++..||.|.|||+.....+..++.+ +..++.++++|.
T Consensus 485 eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 485 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence 126799999976432 1223333345677899999999999999999999999988887777654 456788999999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
.+-+|+-|.++|-||+|....... ..-...|..+.++|.+.+++++-.++.+.+......+ .+.++.|...|
T Consensus 565 klWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScV 636 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCV 636 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEE
Confidence 999999999999999987543211 1224568899999999999999999999999875443 46778888899
Q ss_pred eeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecce
Q 019603 251 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSV 310 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~ 310 (338)
.++.|.+.|++++|.+.|..+..|..--|..+...+ ..++|.|...+-|.+++++||+.
T Consensus 637 LSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred EEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCC
Confidence 999999999999999999999999998887776665 45889999999999999999964
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=5.8e-22 Score=179.61 Aligned_cols=245 Identities=16% Similarity=0.251 Sum_probs=191.1
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCC-eeEEecCccCCCCCceeEEEE
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS-SVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 103 (338)
+-...+.+++.+|+|++|++|..-|++++|++++-+....+..|...+.|+.++.... ..+.++ .+-+.-|+++|
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS----asrdRlIHV~D 532 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS----ASRDRLIHVYD 532 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh----ccCCceEEEEe
Confidence 3356789999999999999999999999999998887777788888888888875321 122222 24457899999
Q ss_pred ccC-CeEEEeecCCccceEEEEEcCCC--CEEEEEECCCeEEEEECCCcceeeeeeecCc--------cEEEEcCCCCEE
Q 019603 104 MYD-NRILRYFKGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--------PTVAFDQQGLVF 172 (338)
Q Consensus 104 ~~~-~~~~~~~~~H~~~V~~l~~~~~~--~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 172 (338)
+.. ..+++++.+|...|+++.|...| ..++|+|.|+.|. |+.....-...+..... .-+..+|...++
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 865 45688999999999999998876 6799999999865 44432111111111111 226778999999
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEE-ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
+++++|+.|+|||+.+.+.. ..|. ..+|.+....+...|.|-|++++..|+++.++|..+|+++. +..+|..-|+
T Consensus 612 ~t~cQDrnirif~i~sgKq~--k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA--~m~GHsE~VT 687 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQV--KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA--QMTGHSEAVT 687 (1080)
T ss_pred EEEecccceEEEecccccee--eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh--hhcCcchhee
Confidence 99999999999998865431 1221 12455677888999999999999999999999999998776 5567778899
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 252 EATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999864
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=2.1e-19 Score=157.31 Aligned_cols=272 Identities=18% Similarity=0.304 Sum_probs=196.7
Q ss_pred CcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEE----eecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 27 GGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTT----YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 27 ~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
...|..+.|+|.+. ++++++ -+.+.+|+++.+.+.+.. ....+-|.+++|..+++.+-. .+++.|.+
T Consensus 200 ne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-------DS~G~i~I 271 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-------DSGGNILI 271 (626)
T ss_pred cceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee-------cCCceEEE
Confidence 34567889999776 555565 578999999988766542 122356888888877664431 34589999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-----------eeeee-e------------
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-----------QGILR-L------------ 157 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-----------~~~~~-~------------ 157 (338)
|+..+.+..+....|.+.|.+|..-.+|. |+||+.|..|..||-.-++. ++++. .
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 99998888877779999999999988775 55699999999998321110 01110 0
Q ss_pred ----------------cCcc--EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEE
Q 019603 158 ----------------RGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML 219 (338)
Q Consensus 158 ----------------~~~~--~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~ 219 (338)
++.. .++..|+...++++++|+.+++|+-. .+.....+ ..+..++.|+|.| .++
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~----k~~wt~~~---~d~~~~~~fhpsg-~va 422 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH----KLEWTKII---EDPAECADFHPSG-VVA 422 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC----ceeEEEEe---cCceeEeeccCcc-eEE
Confidence 0000 13456778889999999999999822 12222222 3457889999999 899
Q ss_pred EEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC-eEeEe-eCCCCceEEEEE
Q 019603 220 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACW-NGNIGVVACLKW 297 (338)
Q Consensus 220 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~-~~~~~-~~h~~~v~~l~~ 297 (338)
+++..|.-.++|.++...+.. +-....++.++|+|+|.+||.|+.|+.|+||.+.... ..... +-|..+|+.|.|
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~---~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw 499 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTI---HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW 499 (626)
T ss_pred EeeccceEEEEecccceeEEE---EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee
Confidence 999999999999876443332 2225678999999999999999999999999997543 22222 334589999999
Q ss_pred cCCCceEEeecc--eEEEeeeCC
Q 019603 298 APRRAMFVAASS--VLSFWIPNP 318 (338)
Q Consensus 298 ~p~~~~l~s~s~--~~~iw~~~~ 318 (338)
++|++++.+-|. .+-.|.+..
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred cCCCceEEeccCceEEEEEcccc
Confidence 999999999874 688895443
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-20 Score=172.41 Aligned_cols=286 Identities=16% Similarity=0.251 Sum_probs=207.9
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC--C--eeEeEEeecccCeeeEEEeecCCeeE-EecCc------
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS--A--KLIKTTYHKKHGADCVCFTHHPSSVI-CSTKY------ 90 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------ 90 (338)
+...|.+.|..+.|-|....++|++.|+++++|=..+ | +.++.-.+|..+..|+.|.......+ .+...
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 3348999999999999999999999999999995543 3 34555555555555555542221111 11000
Q ss_pred -----------------------cC------------------------------CCCCceeEEEEccCCeEEEeecCCc
Q 019603 91 -----------------------NL------------------------------DSTGESLRYLSMYDNRILRYFKGHK 117 (338)
Q Consensus 91 -----------------------~~------------------------------~~~~~~i~~~~~~~~~~~~~~~~H~ 117 (338)
+. --+....+.|+......-+..-.|+
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 00 0112345566665544322222233
Q ss_pred ------cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeee---eecCccE--EEEcCCCCEEEEEEcCCeEEEEeC
Q 019603 118 ------ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL---RLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 118 ------~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~dg~i~i~d~ 186 (338)
..+++++.+++|++.+-|+..|+|-+|++.+|-..+.+ +.+..+. ++.+.-+..+++++.+|.+++||.
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 78999999999999999999999999999998766666 3444444 566666778999999999999998
Q ss_pred CCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEc
Q 019603 187 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs 266 (338)
+... ..... .-...+.++.++.....++++..|-.|.++|..+.+..+.| .+|.+.+++.+|||||++|++++
T Consensus 523 ~~k~--l~~~l---~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f--~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 523 KKKV--LKKSL---RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF--WGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred CCcc--eeeee---ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh--hccccceeeeEeCCCCcEEEEee
Confidence 6532 11111 12345777788888788888888889999999877766644 46667899999999999999999
Q ss_pred CCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc---eEEEee
Q 019603 267 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS---VLSFWI 315 (338)
Q Consensus 267 ~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---~~~iw~ 315 (338)
.|++||+||+-++.++-.+- -..++.+|.|+|+|.+||++.. .|.+|.
T Consensus 596 mD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99999999999998887664 3577899999999999999863 477784
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.1e-21 Score=160.04 Aligned_cols=261 Identities=17% Similarity=0.267 Sum_probs=182.4
Q ss_pred HhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcC----CCe-----------eEe-E------------E
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIV----SAK-----------LIK-T------------T 65 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~----~~~-----------~~~-~------------~ 65 (338)
+++-..+..|.||.|.|+++.|++.+.+++++|.|++..||... ..+ .+. . .
T Consensus 177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 34566788999999999999999999999999999999999721 100 000 0 0
Q ss_pred eecccCeeeEEEeecCCeeEEecCccC-------CCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC
Q 019603 66 YHKKHGADCVCFTHHPSSVICSTKYNL-------DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD 138 (338)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D 138 (338)
.++.-.++.+.+..+..-+.++ .|-. .+=+.+-.+||+++++++..+.||....+-++-+|..+.++++|.|
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~-dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD 335 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSAC-DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD 335 (481)
T ss_pred CCceeeeeeeeeeccccceEeh-hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccC
Confidence 0000112333343333322211 1100 1113677899999999999999999999999999999999999999
Q ss_pred CeEEEEECCCc-ceeeeeeecCcc--EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC
Q 019603 139 HSVRIWDLRVN-ACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 215 (338)
Q Consensus 139 ~~I~iWd~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 215 (338)
.+.++||.|.. ....+|+.+... .+.|..+ ..+++|+.|.++++||+|.+.. ++.++. ....++.+..+..+
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs-plATIR---tdS~~NRvavs~g~ 410 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS-PLATIR---TDSPANRVAVSKGH 410 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC-cceeee---cCCccceeEeecCC
Confidence 99999999832 223455554432 3455554 5678999999999999998754 444433 24567788888777
Q ss_pred CEEEEEecCCcEEEEEccCCeeEEEe--eeCCCCCCCeeEEECCCC--CEEEEEcCCCcEEEEECCCCC
Q 019603 216 KSMLLTTTNNNIYVLDAYGGEKRCGF--SLEPSPNTNTEATFTPDG--QYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 216 ~~i~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~fs~~~--~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
..|+.-..++.|++||+........- .-.+|..-+.+++|..+- ..|+++|-|+.+.-|+++..+
T Consensus 411 ~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 77777777788999998755433221 123555667888887443 458899999999999998653
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=6e-21 Score=166.64 Aligned_cols=260 Identities=15% Similarity=0.262 Sum_probs=189.6
Q ss_pred eeEEEeecCCC-EEEEeeCCCcEEEEEcCCC--eeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 30 INSLDFHRKDD-LLVTASDDDSVRLYDIVSA--KLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 30 V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
+.++.|+.... .+++.+.|+.+++|.-... .....-........|+.+... +..+++ .+.++.+++||+..
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S~y~~s-----gG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-SLYEIS-----GGQSGCVKIWDLRA 110 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-ceeeec-----cCcCceeeehhhHH
Confidence 89999987664 3445567999999965422 111111111112223222111 111222 23457899999997
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE---EEEcCCCC-EEEEEEcCCeEE
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT---VAFDQQGL-VFAVAMEAGAIK 182 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~dg~i~ 182 (338)
..+.+.+++|+..|+++.+...+.+||+++..|.|.|-.+.++.....+....... +.+++... ++.+++.+|.+.
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 77888999999999999999999999999999999999999887766666654433 56777665 567889999999
Q ss_pred EEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 183 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
+||..... |+ ..-...|..+...++|+|..+ .+++.+.|..|++||.........+.. ..+...++|+++|-+
T Consensus 191 lwDv~g~s--p~-~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 191 LWDVQGMS--PI-FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTY 264 (673)
T ss_pred EEeccCCC--cc-cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceE
Confidence 99976432 22 122346778888899999765 677889999999999864433322222 235778999999999
Q ss_pred EEEEcCCCcEEEEECCC-CCeEeEeeCCCCceEEEEEcCCC
Q 019603 262 VVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR 301 (338)
Q Consensus 262 l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~v~~l~~~p~~ 301 (338)
|+.|...|.|+.||++. ..++.++..|...|++|+|-|..
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999984 56788999999999999999875
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.9e-20 Score=161.27 Aligned_cols=265 Identities=12% Similarity=0.204 Sum_probs=194.6
Q ss_pred EeeCC-CcEEEEEcCCCeeEeEEeec-ccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceE
Q 019603 44 TASDD-DSVRLYDIVSAKLIKTTYHK-KHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVI 121 (338)
Q Consensus 44 s~s~D-~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~ 121 (338)
+++.| .++.+||+.+|....++.+. ......+.. .++..++.+.. .-..+.+|.+.........---.++|.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~-----~rp~l~vw~i~k~~~~~q~~v~Pg~v~ 85 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL-----KRPLLHVWEILKKDQVVQYIVLPGPVH 85 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc-----cCccccccccCchhhhhhhccccccee
Confidence 34445 44999999999877666544 111111111 12223332211 113577777654433332223468899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCC-----CCCCC
Q 019603 122 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSY-----DKGPF 194 (338)
Q Consensus 122 ~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-----~~~~~ 194 (338)
++.-+|+|.+++.|+.-+.|.+|.+.+|..+.++..|.. .++.|+.||.++++|++||.|.+|.+-.. ...+.
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 999999999999998999999999999998887765543 46889999999999999999999975321 00111
Q ss_pred eeEEecCCCCceEEEEEcCC--CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEE
Q 019603 195 DTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 272 (338)
Q Consensus 195 ~~~~~~~~~~~i~~v~~sp~--~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~ 272 (338)
......+|+-.|+++...+. ..++++++.|+++++||+..|.....+.+ +..+++++.+|.+..++.|+++|.|.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---CCcceeEEEcccccEEEecCCcceEE
Confidence 22345688899999988765 45799999999999999998876655543 35688999999999999999999999
Q ss_pred EEECCCCC----------------eEeEeeCCCC--ceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 273 AWNINTRN----------------EVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 273 vWd~~~~~----------------~~~~~~~h~~--~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+.++.... .+..+.||.+ .|+||+.+-||..|++|+ +.+.||.+.
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 99875422 3556789988 999999999999999998 578899654
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.7e-20 Score=162.27 Aligned_cols=298 Identities=19% Similarity=0.205 Sum_probs=209.4
Q ss_pred HHhccccceeeccCCcceeEEEeecCC--CEEEEeeCCCcEEEEEcCC--Cee--EeEEeecccCeeeEEEeecCCeeEE
Q 019603 13 TVRSMAMAAIFSDFGGKINSLDFHRKD--DLLVTASDDDSVRLYDIVS--AKL--IKTTYHKKHGADCVCFTHHPSSVIC 86 (338)
Q Consensus 13 ~~~~~~~~~~~~~h~~~V~~l~~s~~~--~~l~s~s~D~~i~iWd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (338)
+.-.+.+..++.=|.+.|++++|+|.. +++++|..-|.|-+||+.+ .+. +.....|..+|.++.|++.....+.
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 344455667777899999999999965 4888888999999999942 122 2222344556888888876554443
Q ss_pred ecCccCCCCCceeEEEEccCCeEEEeecC--CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-eeeeeecC--cc
Q 019603 87 STKYNLDSTGESLRYLSMYDNRILRYFKG--HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRG--RP 161 (338)
Q Consensus 87 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~~--~~ 161 (338)
++ +-+++||+-|+..+.....+.- -.....++.|+.....++.|..=|...+||+|++.. ...+.++. ..
T Consensus 252 ss-----SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 252 SS-----SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred ee-----ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 33 3358999999987643333322 344566778888878788887777999999997754 22333333 34
Q ss_pred EEEEcCCC-CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc-CCeeEE
Q 019603 162 TVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRC 239 (338)
Q Consensus 162 ~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~-~~~~~~ 239 (338)
.+.++|.. .++++++.|++.+|||+|......--.+....|...|.+..|||++..+++.+.|++|+|||.. -+.+..
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 57888865 4889999999999999997543221122234678889999999998889999999999999972 122222
Q ss_pred EeeeCCCCC------CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC-CCceEE-EEEcCCCceEEeec-ce
Q 019603 240 GFSLEPSPN------TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVAC-LKWAPRRAMFVAAS-SV 310 (338)
Q Consensus 240 ~~~~~~~~~------~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-~~~v~~-l~~~p~~~~l~s~s-~~ 310 (338)
......|+. ....+.|.|+..+++.|---..|-|+|-+.++.+..+... ...|.+ ..|||-+..+++|+ ..
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 222223321 2335689999999999998889999999988877776433 335655 79999999788876 45
Q ss_pred EEEee
Q 019603 311 LSFWI 315 (338)
Q Consensus 311 ~~iw~ 315 (338)
++||.
T Consensus 487 Gki~v 491 (498)
T KOG4328|consen 487 GKIYV 491 (498)
T ss_pred ceEEE
Confidence 56553
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=3.1e-19 Score=164.59 Aligned_cols=303 Identities=15% Similarity=0.270 Sum_probs=227.6
Q ss_pred HhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
++.-+++.+|.+|...|+++.=+|-=+.++.|-.||+|.|+|+..++.+.+..+....+..++|.-++..++.++.
T Consensus 189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---- 264 (910)
T KOG1539|consen 189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---- 264 (910)
T ss_pred eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc----
Confidence 3455678899999999999999998889999999999999999999999888777678999999887777665432
Q ss_pred CCCceeEEEEccCCeEEEeec-CCccceEEEEEcCCCCEEEEEECCCeEEEEECC--Ccc--eeeeeeecCcc--EEEEc
Q 019603 94 STGESLRYLSMYDNRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--VNA--CQGILRLRGRP--TVAFD 166 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~-~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~--~~~--~~~~~~~~~~~--~~~~~ 166 (338)
.-+.+-+||++..+.+..++ .|.+.|..+.|-|....++|++.|..+++|=.. .+. ..+.-..|..| ++.|-
T Consensus 265 -~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 265 -SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred -CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 22679999999988877665 899999999999999999999999999998332 221 11111111111 22222
Q ss_pred -CCCCEEEEEEcCCeEEEE-------------------------------------------------------------
Q 019603 167 -QQGLVFAVAMEAGAIKLF------------------------------------------------------------- 184 (338)
Q Consensus 167 -~~~~~~~~~~~dg~i~i~------------------------------------------------------------- 184 (338)
.+|..+.++..|++.+.|
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 344455555555544444
Q ss_pred ----eCCCCCCCCCeeEEecC-----CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEee-eCCCCCCCeeEE
Q 019603 185 ----DSRSYDKGPFDTFLVGG-----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEAT 254 (338)
Q Consensus 185 ----d~~~~~~~~~~~~~~~~-----~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~ 254 (338)
+.+....+ .+.+.. ....+++++.++.|+..+.|...|.|-+|++.+|.....|. -..|...++.++
T Consensus 424 ~~tW~~~n~~~G---~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla 500 (910)
T KOG1539|consen 424 AYTWNFRNKTSG---RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA 500 (910)
T ss_pred EEEEeccCcccc---cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence 43322111 111111 23568889999999999999999999999999997766653 235667899999
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCe-----------------------------------------EeEeeCCCCceE
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNINTRNE-----------------------------------------VACWNGNIGVVA 293 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~~~~~-----------------------------------------~~~~~~h~~~v~ 293 (338)
...-++.++|++.||-+++||.++... ++.|.+|.+.|+
T Consensus 501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nrit 580 (910)
T KOG1539|consen 501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRIT 580 (910)
T ss_pred ecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccccee
Confidence 999999999999999999999876542 223568999999
Q ss_pred EEEEcCCCceEEeec--ceEEEeeeCCCCCCCC
Q 019603 294 CLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 324 (338)
Q Consensus 294 ~l~~~p~~~~l~s~s--~~~~iw~~~~~~~~~~ 324 (338)
++.|||||+++++++ ++|++|+.|....++-
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 999999999999998 6899999886655543
No 134
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-19 Score=149.82 Aligned_cols=236 Identities=15% Similarity=0.206 Sum_probs=185.4
Q ss_pred ccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEEC--CCeEEEEEC
Q 019603 69 KHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSL--DHSVRIWDL 146 (338)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~--D~~I~iWd~ 146 (338)
...+..+.|+.++..++.+ +.+.++++||..+++..+++..++-.|..+.|......++.+|. |.+||.-++
T Consensus 14 ~~~i~sl~fs~~G~~lits------s~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITS------SEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCceeEEEecCCCCEEEEe------cCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 3456777777776666543 33579999999999999999988888999999877777766665 999999999
Q ss_pred CCcceeeeeeecCccE--EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC
Q 019603 147 RVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 224 (338)
Q Consensus 147 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d 224 (338)
.+++.++.|..|...+ ++.+|-+..+++++.|++|++||+|...+.. .+. ...-..++|+|+|-.++++...
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg--~l~----~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG--LLN----LSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce--EEe----cCCCcceeECCCCcEEEEecCC
Confidence 9999999998887654 6778989999999999999999999654421 111 1223346899999988888887
Q ss_pred CcEEEEEccCCee--EEEeeeC-CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCce---EEEEEc
Q 019603 225 NNIYVLDAYGGEK--RCGFSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV---ACLKWA 298 (338)
Q Consensus 225 ~~i~i~~~~~~~~--~~~~~~~-~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v---~~l~~~ 298 (338)
+.|+++|++.-.+ -..|... ......+.+.|||||++|+-+...+.+++-|.-+|.....+..+...- -...|.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 8999999864322 2233333 333567889999999999999999999999999999988888775433 578899
Q ss_pred CCCceEEeec--ceEEEeee
Q 019603 299 PRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 299 p~~~~l~s~s--~~~~iw~~ 316 (338)
||++++++|+ +++-+|..
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CCCcEEEEecCCCcEEEEEc
Confidence 9999999997 56778864
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.1e-21 Score=153.87 Aligned_cols=212 Identities=15% Similarity=0.203 Sum_probs=150.2
Q ss_pred ccceeeccCCcceeEEEeec--CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 18 AMAAIFSDFGGKINSLDFHR--KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
+++.+|.||.|+|+.++|-. -|.+|+||+.|+.|.||.-+.|+..+.
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~------------------------------- 95 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA------------------------------- 95 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh-------------------------------
Confidence 57889999999999999964 799999999999999999877643221
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCC--CEEEEEECCCeEEEEECCCc-c-ee-eeeee--cCccEEEEcCC
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVN-A-CQ-GILRL--RGRPTVAFDQQ 168 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~--~~l~Sgs~D~~I~iWd~~~~-~-~~-~~~~~--~~~~~~~~~~~ 168 (338)
..+..|...|++++|.|.+ -.|+++|.||.|.|.+.+.. . .. +.... -+...+++.|-
T Consensus 96 ---------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 96 ---------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred ---------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 1124577777777777763 46777788888887776543 1 11 11111 23344555543
Q ss_pred ---C-----------CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC----CEEEEEecCCcEEEE
Q 019603 169 ---G-----------LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG----KSMLLTTTNNNIYVL 230 (338)
Q Consensus 169 ---~-----------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~----~~i~~~~~d~~i~i~ 230 (338)
| +.|++|+.|..++||+.....- ..+ ..+.+|...|..++|.|.- .+|++++.|+++.||
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-KLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcch-hhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 2 4578888888888887654311 111 1256899999999999974 469999999999999
Q ss_pred EccCC-eeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 231 DAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
..... +......++..+..+.+++||+.|..|+.++.|..|.+|.-+
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 75421 111122233455678999999999999999999999999865
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=2.8e-20 Score=152.89 Aligned_cols=245 Identities=16% Similarity=0.265 Sum_probs=172.2
Q ss_pred ccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCC-eeEEecCccCCCCCceeEE
Q 019603 24 SDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS-SVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 24 ~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 101 (338)
.+|+-.|.++.|-| |..++.|+|-|+++|+||..+.+.......+. .+...++++... .-+.+. ...+-.+|+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~----gtr~~~VrL 172 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAA----GTRDVQVRL 172 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEE----ecCCCcEEE
Confidence 58999999999999 55588889999999999998876543332221 233333433221 112222 123468999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCE-EEEEECCCeEEEEECCCc-ceeeeeeecC----------------ccEE
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVN-ACQGILRLRG----------------RPTV 163 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~-l~Sgs~D~~I~iWd~~~~-~~~~~~~~~~----------------~~~~ 163 (338)
-|+.+|....++.||++.|.++.|+|..++ |+|||.||.||+||+|.- .|..++..+. ...+
T Consensus 173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred EeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 999999999999999999999999999885 789999999999999865 3444433221 1236
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCCCCC--CeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe
Q 019603 164 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGP--FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 164 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~ 241 (338)
+|..++.++++.+.|..+++|+...+.... +....-......-..+. +-+...++.--.++.+.++++..++.+..+
T Consensus 253 a~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 253 AWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred eecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee
Confidence 788999999999999999999977654311 11100000000011122 223334444555688999999889888766
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
..+ ...+.+..|-|+-+.+.+|+.|+.|+.|-.
T Consensus 332 ~~h--~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STH--LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecc--cceeeEEeecCchhhhhccccCCccccccc
Confidence 655 557888999999999999999999999987
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=1.5e-19 Score=163.60 Aligned_cols=292 Identities=16% Similarity=0.305 Sum_probs=205.3
Q ss_pred ceeeccCCcceeEEEeecCCC---EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 20 AAIFSDFGGKINSLDFHRKDD---LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~---~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
...+.||.++|+|+.|-|+.+ +|+||+.|+.|++|.++....++......+...++++........+ .+++
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~------~~ad 120 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTC------KAAD 120 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEe------eccC
Confidence 456789999999999999888 8999999999999999844333333223356666776655444333 1456
Q ss_pred ceeEEEEccCCe--EEEeecCCccc--eEEEEEcCCCC--EEEEEECCCeEEEEECCCcceeeeeeecCc----cEEEEc
Q 019603 97 ESLRYLSMYDNR--ILRYFKGHKER--VISLCMSPVND--SFMSGSLDHSVRIWDLRVNACQGILRLRGR----PTVAFD 166 (338)
Q Consensus 97 ~~i~~~~~~~~~--~~~~~~~H~~~--V~~l~~~~~~~--~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~----~~~~~~ 166 (338)
+++.+|+....+ +...++--.+. -.|++..++.+ .++.|+.+..|.++--...++.....+.+. ..++|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 899999995555 23333322223 34555666433 367888889999997666666666655554 235554
Q ss_pred C---CCCEEEEEEcCCeEEEEeCCCCC---------------CCC-Ce---eE--------EecCCCCceEEEEEcCCCC
Q 019603 167 Q---QGLVFAVAMEAGAIKLFDSRSYD---------------KGP-FD---TF--------LVGGDTAEVCDIKFSNDGK 216 (338)
Q Consensus 167 ~---~~~~~~~~~~dg~i~i~d~~~~~---------------~~~-~~---~~--------~~~~~~~~i~~v~~sp~~~ 216 (338)
. +..+++++++|.+||||.+.-.. ..+ +. .+ ++-||...|.++.|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 3 34588999999999999764322 000 00 00 1238899999999999999
Q ss_pred EEEEEecCCcEEEEEcc--CCeeEEEeeeC---CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC---CCeEeEeeCC
Q 019603 217 SMLLTTTNNNIYVLDAY--GGEKRCGFSLE---PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACWNGN 288 (338)
Q Consensus 217 ~i~~~~~d~~i~i~~~~--~~~~~~~~~~~---~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~---~~~~~~~~~h 288 (338)
.+++++.|+++.+|... +|-.....++- +........-|+|++..+++-|.-|..++|.-.. ........||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 99999999999999654 34444433332 3344578889999999999999999999999322 2345566799
Q ss_pred CCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 289 IGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 289 ~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
.+.|..|+|+|.|.+|.++| .+-+++.+-
T Consensus 361 ~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 361 VDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred cccceeeeecCCCCEEEEeccccceeeeccc
Confidence 99999999999999999998 467777443
No 138
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.8e-20 Score=163.50 Aligned_cols=221 Identities=19% Similarity=0.320 Sum_probs=159.6
Q ss_pred HHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEE-eecccCeeeEEEeecCCeeEEecCc
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT-YHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
.-+.+..+...|.||.|.|++|.|+.+|.+|+|||+|-.+.|||....+++..+ .+|...+-++.|.+....-+..+.
T Consensus 35 ~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg- 113 (758)
T KOG1310|consen 35 TWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG- 113 (758)
T ss_pred HHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec-
Confidence 345567788899999999999999999999999999999999999988887765 456667777888776544333332
Q ss_pred cCCCCCceeEEEEccCC----------eEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcc-eeeee---
Q 019603 91 NLDSTGESLRYLSMYDN----------RILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNA-CQGIL--- 155 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~----------~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~-~~~~~--- 155 (338)
+++..|+++|+.+. +...-+..|+++|..++..|++ ..|.|+|+||+|+-+|+|... |....
T Consensus 114 ---AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 114 ---AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred ---cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 45688999999752 2344567899999999999998 689999999999999998632 21110
Q ss_pred --------eecCccEEEEcCCC-CEEEEEEcCCeEEEEeCCCCC-----------CCCC----eeEEecCC---------
Q 019603 156 --------RLRGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYD-----------KGPF----DTFLVGGD--------- 202 (338)
Q Consensus 156 --------~~~~~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~-----------~~~~----~~~~~~~~--------- 202 (338)
++-...++.++|.. .++++|+.|-..++||.|... +.+. ......+|
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 01112356778854 589999999999999954211 1110 01111111
Q ss_pred --CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe
Q 019603 203 --TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 236 (338)
Q Consensus 203 --~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~ 236 (338)
...++.+.|+|+|..+++.-....|+++|+..++
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 1125568899999988888777889999876443
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=160.14 Aligned_cols=240 Identities=21% Similarity=0.396 Sum_probs=175.4
Q ss_pred cccCHHHHhccccceeeccCCcceeEEEeecCCC--EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCee
Q 019603 7 AELDDETVRSMAMAAIFSDFGGKINSLDFHRKDD--LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSV 84 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (338)
.++++++-+..++......|.|.|+-++-++-++ +.++=+..|.|+|||+... +.. ++ .+...
T Consensus 131 ~~eddedD~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~------------l~-~~~~~ 195 (440)
T KOG0302|consen 131 EEEDDEDDRKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNA------------LS-EPGLE 195 (440)
T ss_pred ccccchhhccccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhh------------hc-Ccccc
Confidence 4455555556666677779999999999888654 6666667899999998532 110 00 00000
Q ss_pred EEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeeeeecCccEE
Q 019603 85 ICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 163 (338)
Q Consensus 85 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~ 163 (338)
++- ...+++.++.+|...=++|.|+|-. ..++||.--+.|++|...++. ..
T Consensus 196 --------------~~~---s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~----W~------- 247 (440)
T KOG0302|consen 196 --------------VKD---SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS----WK------- 247 (440)
T ss_pred --------------ccc---cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc----ee-------
Confidence 000 1235678889999999999999943 358888888899999764422 00
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEEee
Q 019603 164 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 164 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
+|. .| +.+|+..|-.++|||..+ .+++|+.|+.|+|||.+.+.+.....
T Consensus 248 --------------------vd~-----~P-----f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 248 --------------------VDQ-----RP-----FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred --------------------ecC-----cc-----ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 011 11 125788899999999754 78899999999999999885544444
Q ss_pred eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC---CCeEeEeeCCCCceEEEEEcCCCc-eEEeec--ceEEEeee
Q 019603 243 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIP 316 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~---~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s--~~~~iw~~ 316 (338)
...|...|+-++|+-+-.+||+|+.||+++|||++. ++++..|+.|..+|++|.|+|... .|++++ ..+.||..
T Consensus 298 ~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 477888899999999999999999999999999974 678999999999999999999654 444443 46999987
Q ss_pred CCC
Q 019603 317 NPS 319 (338)
Q Consensus 317 ~~~ 319 (338)
...
T Consensus 378 svE 380 (440)
T KOG0302|consen 378 SVE 380 (440)
T ss_pred ecc
Confidence 644
No 140
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=1.3e-20 Score=168.98 Aligned_cols=123 Identities=21% Similarity=0.343 Sum_probs=100.4
Q ss_pred cceeeccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeE------EeecccCeeeEEEeecCCeeEEecCcc
Q 019603 19 MAAIFSDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKT------TYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
.+..+-+|+..|+.+.|+| .+.+|+|||.|..+|||.+..|-..+. +.+....+.++.|++..+.++.+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s---- 146 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS---- 146 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe----
Confidence 5667889999999999999 566899999999999999974432111 12223346677776666666644
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 147 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~ 147 (338)
..++++++||+.+++.+..+.+|.+.|.+..|+.||+.++++..|+.|+|||.|
T Consensus 147 --~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 147 --GAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred --ccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 334889999999999999999999999999999999999999999999999987
No 141
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=8e-20 Score=155.54 Aligned_cols=285 Identities=16% Similarity=0.257 Sum_probs=197.2
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC------CeeEeEEee-cccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS------AKLIKTTYH-KKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
+.+|.|.|+++.|+.++++|+|||+|..+++|+++. .+.+....+ |...+.++.|......++.+ ..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG------~~ 125 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG------ER 125 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC------CC
Confidence 468999999999999999999999999999999853 233332222 23456677776555544432 23
Q ss_pred CceeEEEEccCCeEEEeecC--CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-eeeeeec--Cc--cEEEEcCC
Q 019603 96 GESLRYLSMYDNRILRYFKG--HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLR--GR--PTVAFDQQ 168 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~--H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~--~~--~~~~~~~~ 168 (338)
.+++.+-|+.+.+.+..+.. ..+.|+.+..+|..+.|++.+.||.|.+||.+.... ...+-+. +. ..+.|+|.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 36788889988877766542 334899999999999999999999999999987653 2222221 11 24678886
Q ss_pred CC-EEEEEEcCCeEEEEeCCCCCCCCCe--eEE-ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 169 GL-VFAVAMEAGAIKLFDSRSYDKGPFD--TFL-VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 169 ~~-~~~~~~~dg~i~i~d~~~~~~~~~~--~~~-~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
.. +++++...+-+.+||.|......+. .++ +......-..+.|+|.|..+++.-....-.+||.-+..+ ..++..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~-~V~k~D 284 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC-FVLKSD 284 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc-eeEecc
Confidence 54 6778888899999998864332110 111 111233446788999999888776665566666543221 222222
Q ss_pred CC------CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC-----------------------CeEeEeeCCCCceEEE
Q 019603 245 PS------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-----------------------NEVACWNGNIGVVACL 295 (338)
Q Consensus 245 ~~------~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~-----------------------~~~~~~~~h~~~v~~l 295 (338)
.. ...+.+++|--| ..++||+.+--|++|.+... +....|+||.+.++.|
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11 134556777644 45999999999999997521 1244678999999999
Q ss_pred EEcCCCceEEeec--ceEEEee
Q 019603 296 KWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 296 ~~~p~~~~l~s~s--~~~~iw~ 315 (338)
+|+|...+|++.+ ..+|||-
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 9999999999877 3689994
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.4e-22 Score=180.04 Aligned_cols=201 Identities=20% Similarity=0.301 Sum_probs=164.4
Q ss_pred HhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
+..+..+..|.+|..+|.+|.|+....+|+.|+.||+||+||+++++.++++.++...+..+.|++. ..+.++ .
T Consensus 57 i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~----g 130 (825)
T KOG0267|consen 57 IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY--GEFFAS----G 130 (825)
T ss_pred ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc--eEEecc----c
Confidence 4445556668999999999999999999999999999999999999999999888877777776543 333322 2
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCE
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLV 171 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~ 171 (338)
+.+..+++||.....+...+++|...|..+.|+|+|+++++|+.|.+++|||+..|+..+.|..+... .+.|+|...+
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~L 210 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVL 210 (825)
T ss_pred cccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhh
Confidence 44577999999988899999999999999999999999999999999999999999988888766544 4668888889
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 224 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d 224 (338)
++.|+.|+++++||++++... -........|.+..|+|+++.++.+...
T Consensus 211 la~Gs~d~tv~f~dletfe~I----~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETFEVI----SSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hccCCCCceeeeeccceeEEe----eccCCccCCceeeeecCCceeeecCchh
Confidence 999999999999999864210 0112346679999999999877666543
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=5.2e-21 Score=159.26 Aligned_cols=271 Identities=16% Similarity=0.236 Sum_probs=191.5
Q ss_pred cCCcceeEEEeecC----CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 25 DFGGKINSLDFHRK----DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 25 ~h~~~V~~l~~s~~----~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
.|..+-+.++|+-+ ..+|+.||.-|.|||.|+.++++.+.+.+|...++-+.+.++...++.+. +.+.++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~-----SkD~svR 161 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSA-----SKDHSVR 161 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEe-----cCCceEE
Confidence 47777888998753 34899999999999999999999999999999898888877655444332 4468999
Q ss_pred EEEccCCeEEEee---cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEc
Q 019603 101 YLSMYDNRILRYF---KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAME 177 (338)
Q Consensus 101 ~~~~~~~~~~~~~---~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
+|++.+..++..| .||.+.|.++.|++++.+|+|||.|.+|++|++...+....++. ...++|++...-.-
T Consensus 162 lwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~----s~~~~~~~t~~pfp-- 235 (385)
T KOG1034|consen 162 LWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL----SITYSPNKTTRPFP-- 235 (385)
T ss_pred EEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh----hcccCCCCccCcCC--
Confidence 9999999998876 57999999999999999999999999999999986553222221 13344443221000
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEc-cCCee-------------EEEeee
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA-YGGEK-------------RCGFSL 243 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~-~~~~~-------------~~~~~~ 243 (338)
.....+.+.. ....|...|-|+.| -|.++++-+.++.|..|.. .-++. ...+..
T Consensus 236 t~~~~fp~fs----------t~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~ 303 (385)
T KOG1034|consen 236 TPKTHFPDFS----------TTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY 303 (385)
T ss_pred cccccccccc----------ccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc
Confidence 0011111110 11235566777777 4678888888999999865 11111 111222
Q ss_pred CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeE--eEee--CCCCceEEEEEcCCCceEEeecceEEEeeeCC
Q 019603 244 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV--ACWN--GNIGVVACLKWAPRRAMFVAASSVLSFWIPNP 318 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~--~~~~--~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~~ 318 (338)
....-+....+|.|.++.||.|...|.|++||++.-.+. .++. .....|...+|+.|+.+|+.......||.++.
T Consensus 304 ~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 304 PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 222234556788899999999999999999999865442 2332 23468899999999999999988888887653
No 144
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=6.5e-20 Score=165.97 Aligned_cols=241 Identities=16% Similarity=0.253 Sum_probs=183.1
Q ss_pred HhccccceeeccCCcceeE-EEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 14 VRSMAMAAIFSDFGGKINS-LDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~-l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
.+.|.+.-.|.+|.+-|.. +++-+ ++-.|++|+.|..|.+|.+.....+.++.+|...|.+++....+. ++.++
T Consensus 44 ~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgS--- 119 (745)
T KOG0301|consen 44 GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGS--- 119 (745)
T ss_pred CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecc---
Confidence 4556666778889999887 88875 555799999999999999998888888888887777766544443 33222
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCC
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQG 169 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~ 169 (338)
+ +.+.++|... ++...+.+|+..|+++..-|.+ .++|||.|++||+|.- +++.+++..|.. +-+++-++
T Consensus 120 W---D~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~- 190 (745)
T KOG0301|consen 120 W---DSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD- 190 (745)
T ss_pred c---ccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-
Confidence 2 3889999765 4555699999999999998887 8999999999999974 666677766543 23444444
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
..|+++++||.|++|++.. .. .....+|+..+.++...+++..+++++.|++++||+.. ++....+... ..
T Consensus 191 ~~flScsNDg~Ir~w~~~g-e~----l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt--ts 261 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDLDG-EV----LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT--TS 261 (745)
T ss_pred CCeEeecCCceEEEEeccC-ce----eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc--cc
Confidence 3578899999999999732 21 23445888899999988888999999999999999864 4444333322 25
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
+.++++=++|.. ++|++||.||||..+
T Consensus 262 iWsa~~L~NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 262 IWSAKVLLNGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEEeeCCCE-EEeccCceEEEEEec
Confidence 778888777764 588999999999876
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.7e-19 Score=167.91 Aligned_cols=237 Identities=17% Similarity=0.229 Sum_probs=181.0
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
++..|+..|.+++-. +.+|++|+.|++|.+|...++..-..+.....++.+++++.++..++.+ +++-.|++
T Consensus 51 ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag------sdD~~vK~ 122 (933)
T KOG1274|consen 51 TIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG------SDDTAVKL 122 (933)
T ss_pred hhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee------cCceeEEE
Confidence 333478888888765 4599999999999999998877554555566788899998888776644 44578999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec----C------ccEEEEcCCCCE
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----G------RPTVAFDQQGLV 171 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~----~------~~~~~~~~~~~~ 171 (338)
.+..+....+.+++|.++|.+|.|+|.+++||+.+-||.|++||+..+.+.+++..- + ...++|+|+|..
T Consensus 123 ~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 123 LNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred EeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 999999999999999999999999999999999999999999999988776554321 1 123789999999
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
+++...|+.|++|+...+.. ...+....+...++++.|+|.|+||++++.+|.|.|||..+-+. +.....|.
T Consensus 203 la~~~~d~~Vkvy~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc 274 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVC 274 (933)
T ss_pred EEeeccCCeEEEEccCCcee--heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeE
Confidence 99999999999999766542 11122222334489999999999999999999999999876221 22334678
Q ss_pred eEEECCCCCEEEEEcCCCcEEEE
Q 019603 252 EATFTPDGQYVVSGSGDGTLHAW 274 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~Dg~i~vW 274 (338)
+.+|.|+..-+-.-...|...+|
T Consensus 275 ~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 275 CEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEecCCCCCeeEEEeeccccccC
Confidence 88888887655433333433333
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=150.13 Aligned_cols=205 Identities=18% Similarity=0.322 Sum_probs=148.9
Q ss_pred EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc-----eee-eeeecCccEEEEcCCCCEEEE-EEcCCeEE
Q 019603 110 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----CQG-ILRLRGRPTVAFDQQGLVFAV-AMEAGAIK 182 (338)
Q Consensus 110 ~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~-~~~dg~i~ 182 (338)
+..++||.+.|++++|+.+|++|+|++.|++|++||++.-. |+. .++......+.|.||..-+++ .....+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 34579999999999999999999999999999999997542 221 122233345889999875444 44556788
Q ss_pred EEeCCCCCCC--C-----CeeEEe-cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 183 LFDSRSYDKG--P-----FDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 183 i~d~~~~~~~--~-----~~~~~~-~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
+|-+.....+ + .+.+.+ .-|...+..+-....+++|.+++.|..|.+|++. |....... -.....+.++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id--tnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID--TNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec--ccccccccee
Confidence 8864321111 1 111111 1234456667777788999999999999999987 54433221 1223456789
Q ss_pred ECCCCCEEEEEcCCCcEEEEECC---C-----CCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNIN---T-----RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~---~-----~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
.||+|+++++++----|+||..- . -+.+..|+||+..|..++|||+.+.+++.| ++.+||..+
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 99999999999988889999973 2 234667899999999999999999999998 678999866
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.9e-20 Score=171.20 Aligned_cols=243 Identities=17% Similarity=0.247 Sum_probs=184.1
Q ss_pred eeEEEeec-CCCEEEEeeCCCcEEEEEcCC---CeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 30 INSLDFHR-KDDLLVTASDDDSVRLYDIVS---AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 30 V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
+..|.|+. +.++|+|++..|.|.+||+.. .+++..+..|...+.++.|+.....++.++ +-++.|++||++
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG-----SQDg~vK~~DlR 164 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG-----SQDGTVKCWDLR 164 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec-----CCCceEEEEeee
Confidence 44567774 467999999999999999976 445555666777889998876555555432 345899999999
Q ss_pred CCeEEEeecCCccceEEEEEcCC-CCEEEEEECCCeEEEEECCCc-ceeeeeeecCcc--EEEEcCCCCEEEEEEcCCeE
Q 019603 106 DNRILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAI 181 (338)
Q Consensus 106 ~~~~~~~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~i 181 (338)
..+...++.+....|..+.|+|. +.+|+++...|.+++||+|.. +|...+..|..+ ++.|+|++..+|+|+.|+++
T Consensus 165 ~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 165 SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 99999999999999999999996 568999999999999999865 455555555544 57789999999999999999
Q ss_pred EEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEE-EEec--CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC-
Q 019603 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-LTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP- 257 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~-~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~- 257 (338)
+|||+......+..+. ....++.+|+|-|...+.+ +++. |-.|+|||++..- +.-..+..|...++.++|-.
T Consensus 245 kiWd~t~~~~~~~~tI---nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~vt~i~W~~~ 320 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTI---NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSVTGIAWDSG 320 (839)
T ss_pred EEEeccCCCccceeEE---eecceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccceeeeccCccccceeccCC
Confidence 9999875444333222 2356799999999877644 4443 5689999986442 22234456777888899865
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCe
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
|-..|.+++.||+|.....++...
T Consensus 321 d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 321 DRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred CceeeEeecCccHHHHhhhhcccC
Confidence 456788999999988777665433
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.2e-19 Score=154.96 Aligned_cols=236 Identities=16% Similarity=0.252 Sum_probs=165.9
Q ss_pred CCEEEEeeCCCcEEEEEcCCCee------Ee-------------E--EeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKL------IK-------------T--TYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~------~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
|+|++.|..|..|-|||+.=... +. . ..+|...+..+++...-..++.+ .+.+.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS-----gsaD~ 266 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS-----GSADK 266 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe-----cCCCc
Confidence 67999999999999999842110 00 0 01222234444544444444433 25569
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcce-eeeeeecC-ccEEEEcCCCC-EEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC-QGILRLRG-RPTVAFDQQGL-VFA 173 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~~-~~~~~~~~~~~-~~~ 173 (338)
++++||+.++++..++..|.++|.++.|+|.. .+|++||.|++|.+.|.|...+ -..++..+ ...+.|+|... .++
T Consensus 267 TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred eEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 99999999999999999999999999999975 5799999999999999995433 23444443 45688998665 677
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
++..||.++-+|+|.... + ...+..|..+|+++++++.-. .+++++.++.+.+|+....+......-...-+...+
T Consensus 347 ~~tddG~v~~~D~R~~~~-~--vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGK-P--VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred EecCCceEEeeecCCCCC-c--eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 888999999999997642 2 234557889999999998755 566788899999998754332211111111122344
Q ss_pred EEECCCCCE-EEEEcCCCcEEEEECCCCCeE
Q 019603 253 ATFTPDGQY-VVSGSGDGTLHAWNINTRNEV 282 (338)
Q Consensus 253 ~~fs~~~~~-l~sgs~Dg~i~vWd~~~~~~~ 282 (338)
.++.|+-.+ |+.||..+.++|||+.+...+
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhH
Confidence 566776654 667888888999999876544
No 149
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=7.2e-17 Score=147.06 Aligned_cols=288 Identities=24% Similarity=0.446 Sum_probs=211.1
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe-eEeEEeeccc-CeeeEEE-eecCCeeEEecCccCCCCCce
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK-LIKTTYHKKH-GADCVCF-THHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 98 (338)
.+..|...+..+.|.+.+..++.++.|+.+.+|+...+. ....+..... .+....+ .......+... ...++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~ 135 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS----SSLDGT 135 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc----CCCCcc
Confidence 567899999999999999999999999999999998876 5554444222 3444444 22222122111 122478
Q ss_pred eEEEEccC-CeEEEeecCCccceEEEEEcCCCCEEEEEEC-CCeEEEEECCCcceeeeeeecC--ccEEEEcCCCC-EEE
Q 019603 99 LRYLSMYD-NRILRYFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGL-VFA 173 (338)
Q Consensus 99 i~~~~~~~-~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~-D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~ 173 (338)
+++|+... ......+..|...|..++|+|+++.+++++. |+.+++|+++.+.....+..+. ...+.+.|++. .++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99999988 7888889999999999999999999998886 9999999998866665555433 34577788887 555
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee-EEEeeeCCCCCCCee
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTE 252 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~ 252 (338)
.+..|+.+++||.+... .......+|.... ...|+|++..+++++.++.+++|+...... ...+ ..|...+..
T Consensus 216 ~~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~ 289 (466)
T COG2319 216 SGSSDGTIRLWDLSTGK---LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLS 289 (466)
T ss_pred EecCCCcEEEEECCCCc---EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEE
Confidence 55899999999876321 1111234454443 237999998888999999999999876554 2222 455678889
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee--CCCCceEEEEEcCCCceEEee-c--ceEEEeeeCCC
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAA-S--SVLSFWIPNPS 319 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~-s--~~~~iw~~~~~ 319 (338)
+.|+|++..+++++.|+.+++|+..+........ .|...+..+.|.|++..++.+ . ..+.+|.....
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 9999999999999999999999998887776666 888889999994332445544 2 34666754433
No 150
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=6.5e-20 Score=162.54 Aligned_cols=263 Identities=19% Similarity=0.309 Sum_probs=183.7
Q ss_pred HhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC--------eeEeEEeecccCeeeEEEeecCCeeE
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA--------KLIKTTYHKKHGADCVCFTHHPSSVI 85 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (338)
.+-++.-.++..|...|..+.|+|-..-|++|+.|++|++|+++.. +.+.++..|..+|.|+++.......+
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 3447777788999999999999999999999999999999999421 24556677888899999887776665
Q ss_pred EecCccCCCCCceeEEEEc------cCC----eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeee
Q 019603 86 CSTKYNLDSTGESLRYLSM------YDN----RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL 155 (338)
Q Consensus 86 ~~~~~~~~~~~~~i~~~~~------~~~----~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~ 155 (338)
.+ +.+++|+.|++ ++. .....+.||++.|+.+++++...+|+++|.||+++.|+...... .++
T Consensus 361 sg------g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 361 SG------GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred ee------ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-ccc
Confidence 43 34589999954 222 23556899999999999999999999999999999999865544 122
Q ss_pred e---ecCccEEEEcCCCCEEEEEEcCCeEE---EEeCCCCCCCCCeeEEec-----CCCCceEEEEEcCCCCEEEEEecC
Q 019603 156 R---LRGRPTVAFDQQGLVFAVAMEAGAIK---LFDSRSYDKGPFDTFLVG-----GDTAEVCDIKFSNDGKSMLLTTTN 224 (338)
Q Consensus 156 ~---~~~~~~~~~~~~~~~~~~~~~dg~i~---i~d~~~~~~~~~~~~~~~-----~~~~~i~~v~~sp~~~~i~~~~~d 224 (338)
. .++.+ ..++......+....+.... ++++..... +..+... .....+..+..+|.....+.+..+
T Consensus 434 ~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~--~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed 510 (577)
T KOG0642|consen 434 GEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD--LLIFESSASPGPRRYPQINKVVSHPTADITFTAHED 510 (577)
T ss_pred CCccccCCc-ceEeeccchhHhhhhhcccccccchhhhhhhh--eeeccccCCCcccccCccceEEecCCCCeeEecccC
Confidence 2 22222 22222221111111222222 222221110 0000000 012346677788988888888999
Q ss_pred CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC
Q 019603 225 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 288 (338)
Q Consensus 225 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h 288 (338)
+.|+++|..++.... ....|...++++++.|+|.+|++|+.||.+++|++....++.....|
T Consensus 511 ~~Ir~~dn~~~~~l~--s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILH--SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred Cceecccccccccch--heeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999988886553 44456678999999999999999999999999999876666555544
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.1e-18 Score=154.84 Aligned_cols=239 Identities=15% Similarity=0.233 Sum_probs=182.6
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
.+|.+++|+.+.+.||.+-.||.|-||++...=+..
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~-------------------------------------------- 61 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE-------------------------------------------- 61 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceee--------------------------------------------
Confidence 679999999999999999999999999987532221
Q ss_pred eEEEeecCC-ccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEEEEcCCeEEEE
Q 019603 108 RILRYFKGH-KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 108 ~~~~~~~~H-~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~i~i~ 184 (338)
..+.|+ ...|.+++|.+ +..|.|.+.+|+|.-||+-+.+....+...+..+ ++.+|.+..+++|+.||.+.++
T Consensus 62 ---~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~ 137 (691)
T KOG2048|consen 62 ---PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDF 137 (691)
T ss_pred ---EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEE
Confidence 112233 34688899994 5578889999999999999888776666666554 5678889999999999977777
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee-----CC-CCCCCeeEEECCC
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EP-SPNTNTEATFTPD 258 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~-----~~-~~~~~~~~~fs~~ 258 (338)
+..... ..+. ..+...+..+.++.|+|++..++.|+.|+.|++||...+......+. .. .+.-+.++.|- .
T Consensus 138 s~~p~~-I~~~-r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-r 214 (691)
T KOG2048|consen 138 SIGPDK-ITYK-RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-R 214 (691)
T ss_pred ecCCce-EEEE-eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-e
Confidence 755321 1111 12223457899999999999999999999999999988866552222 11 23345666666 4
Q ss_pred CCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 259 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 259 ~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
...|++|.+-|+|.+||-..+.+++.+..|.+-|.||+-++++..+++++..-++..+.
T Consensus 215 d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 215 DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 46889999999999999999999999999999999999999988888887554444433
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-17 Score=150.23 Aligned_cols=294 Identities=16% Similarity=0.225 Sum_probs=198.1
Q ss_pred ccccceeeccC-CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 16 SMAMAAIFSDF-GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 16 ~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
.|-+..++.+| .+.|.+++|. ++..|+|.+-+|+|.-||+.+++.+..+......+..++.++..+.+..+ .
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig------c 129 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG------C 129 (691)
T ss_pred CceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee------c
Confidence 44456667776 4789999999 57788999999999999999999888777777777777777665544432 2
Q ss_pred CCceeEEEEccCCeEE--EeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee-----ecC-ccEEEEc
Q 019603 95 TGESLRYLSMYDNRIL--RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-----LRG-RPTVAFD 166 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~--~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~-----~~~-~~~~~~~ 166 (338)
.++.+..++...++.. ..|.-.+++|.+++|+|++..+++|+.||.|++||+.++....... +.. .+++.|+
T Consensus 130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 2355666666555443 3455678999999999999999999999999999999887655222 222 3444443
Q ss_pred C---CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee--EEEe
Q 019603 167 Q---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGF 241 (338)
Q Consensus 167 ~---~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~--~~~~ 241 (338)
- ....+++|...|+|++||....... +.+ ..|...|.++...+++.++++++.|+.+.-+...++.. +...
T Consensus 210 v~~Lrd~tI~sgDS~G~V~FWd~~~gTLi--qS~--~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~ 285 (691)
T KOG2048|consen 210 VLFLRDSTIASGDSAGTVTFWDSIFGTLI--QSH--SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS 285 (691)
T ss_pred EEEeecCcEEEecCCceEEEEcccCcchh--hhh--hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec
Confidence 1 3446889999999999997654321 111 23567799999999999999999999998887665533 1111
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC------------------------------------------CC
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN------------------------------------------TR 279 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~------------------------------------------~~ 279 (338)
+...|...+.+++..++ .+++|+.|+.+.+=... +.
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~ 363 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSV 363 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCc
Confidence 22233334444444433 45555555544433221 11
Q ss_pred ---------CeEeEeeCCCCceEEEEEcCCCceEEeec-ceEEEeeeCCCCCC
Q 019603 280 ---------NEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNS 322 (338)
Q Consensus 280 ---------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw~~~~~~~~ 322 (338)
+..+.......-|.|-+-+|+|++++.+. ...+|....|..+.
T Consensus 364 ~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~v 416 (691)
T KOG2048|consen 364 ILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNV 416 (691)
T ss_pred ccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcce
Confidence 00111112345688999999999999987 56788766654333
No 153
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=1.8e-20 Score=172.63 Aligned_cols=284 Identities=18% Similarity=0.258 Sum_probs=200.9
Q ss_pred CcccccccCHHHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecC
Q 019603 2 ATTSLAELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHP 81 (338)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (338)
||-+.|+-. .....++.+.-|.||-..|+|+.|...|.++++|++|..+|||..+++.++.+..+|...+.-++.+...
T Consensus 166 at~~~akPg-tmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 166 ATFSIAKPG-TMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN 244 (1113)
T ss_pred ceeeecCcH-HHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh
Confidence 344445544 4677888888999999999999999999999999999999999999999988887877666666665544
Q ss_pred CeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeee---eeec
Q 019603 82 SSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI---LRLR 158 (338)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~---~~~~ 158 (338)
..+.. .+.+..|++|.+.++.++..++||++.|++++|+|-. +.+.||++++||.+-.-.+-. ....
T Consensus 245 ~~iaa------aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 245 TMIAA------ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT 314 (1113)
T ss_pred hhhhh------cccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc
Confidence 43332 2445789999999999999999999999999999964 889999999999871111100 0111
Q ss_pred C---ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccC
Q 019603 159 G---RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYG 234 (338)
Q Consensus 159 ~---~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~ 234 (338)
+ ...+.+..++..+++++.|+..+.|.+..... +...+.-+..+.+. .+.++.-.+-.+.+|++.+
T Consensus 315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~----------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW----------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred cccceeeeeccccccccccccCCcccccchhhHhhh----------hccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence 1 11245666778888999998888776543211 11112222233232 2333344455678888877
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCE-EEEEcCCCcEEEEECCCCCeEeEe-eCCCCceEEEEEcCCCceEEeecc
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQY-VVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~-l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
|.... ..-+|...+..+.|+|-+.. ..+++.||+..|||+-.+-+++.+ .+| +.+..-.||++|+.++..+.
T Consensus 385 g~l~H--~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 385 GQLLH--NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred chhhh--hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCC
Confidence 74332 22345556667888886654 557899999999999988766655 465 55667899999998887763
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=152.00 Aligned_cols=208 Identities=20% Similarity=0.311 Sum_probs=154.9
Q ss_pred hccccceeeccCCcceeEEEeecC-CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRK-DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
+.+.++.++.+|+++=++|+|||- ...|+||.--+.|.+|...+|.... +
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v----------------d------------- 249 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV----------------D------------- 249 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee----------------c-------------
Confidence 778899999999999999999993 2357888777889999876654210 0
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcc---eeeeeeec--CccEEEEcC
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNA---CQGILRLR--GRPTVAFDQ 167 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~---~~~~~~~~--~~~~~~~~~ 167 (338)
...|.+|++.|-.|+|+|.. ..|+|||-||+|+|||+|.+. |+.+ +.+ ..+.++|+.
T Consensus 250 ----------------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 250 ----------------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR 312 (440)
T ss_pred ----------------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC
Confidence 12356799999999999975 589999999999999999873 3322 333 245688988
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCC-CCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCCee--------
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKG-PFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEK-------- 237 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~~~-------- 237 (338)
+-.+|++|..||+++|||+|..+.+ |+..| .-|..+|+++.|+|.. ..+++++.|+.|.+||+.....
T Consensus 313 ~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f--k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a 390 (440)
T KOG0302|consen 313 REPLLASGGDDGTLSIWDLRQFKSGQPVATF--KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEA 390 (440)
T ss_pred CcceeeecCCCceEEEEEhhhccCCCcceeE--EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccc
Confidence 8889999999999999999987654 33344 3588999999999964 4678888999999999753211
Q ss_pred EE--------EeeeCCCCCCCeeEEECCCC-CEEEEEcCCCc
Q 019603 238 RC--------GFSLEPSPNTNTEATFTPDG-QYVVSGSGDGT 270 (338)
Q Consensus 238 ~~--------~~~~~~~~~~~~~~~fs~~~-~~l~sgs~Dg~ 270 (338)
.. .+-.+.....+..+.|+++- .+|+|.+-||.
T Consensus 391 ~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 391 AEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 00 01112223456778888764 47788888874
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2.6e-19 Score=155.08 Aligned_cols=255 Identities=18% Similarity=0.281 Sum_probs=170.5
Q ss_pred ccccceeeccCCcceeEEEeecCC-CEEEEeeCCCcEEEEEcCCCeeEeEEee--cccCeeeEEEeecCCeeEEecCccC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTYH--KKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
-+..+..|..|+++|+++.|+|.+ ..+++.|.||+||+=|++.......+.. .......+.|+.....++.+..+
T Consensus 223 d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~-- 300 (498)
T KOG4328|consen 223 DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV-- 300 (498)
T ss_pred ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc--
Confidence 345677899999999999999965 5899999999999999987643221111 11122233344344444443322
Q ss_pred CCCCceeEEEEccCCeE-EEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceee--eee--e--cCccEEE
Q 019603 93 DSTGESLRYLSMYDNRI-LRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQG--ILR--L--RGRPTVA 164 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~-~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~--~~~--~--~~~~~~~ 164 (338)
+...+||.+.+.. ...+.-|..+|.++++.|... +|+|||.|++++|||+|.-.... .+. . +......
T Consensus 301 ----G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAy 376 (498)
T KOG4328|consen 301 ----GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAY 376 (498)
T ss_pred ----cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeE
Confidence 3567888876544 666778999999999999876 68999999999999997532211 121 1 2234578
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCC-CCCCeeEEecCC--CCc--eEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEE
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRSYD-KGPFDTFLVGGD--TAE--VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 239 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~--~~~--i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~ 239 (338)
|+|.+-.+++-+.|..|++||..-.. ..+......+.+ ... .....|.|+..+|+++-.-+.|-|+|...++.++
T Consensus 377 FSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 377 FSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred EcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEee
Confidence 99988789999999999999974111 111111111111 112 2345799999999999999999999988776555
Q ss_pred EeeeCCCCCCCe-eEEECCCCCEEEEE-cCCCcEEEEECC
Q 019603 240 GFSLEPSPNTNT-EATFTPDGQYVVSG-SGDGTLHAWNIN 277 (338)
Q Consensus 240 ~~~~~~~~~~~~-~~~fs~~~~~l~sg-s~Dg~i~vWd~~ 277 (338)
.+-.... ..|. -..|+|-+..+++| +.-|.|+||--+
T Consensus 457 el~~P~~-~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 457 ELHDPES-STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eccCccc-cccccceeecccccceeccCCccceEEEEecC
Confidence 4332222 1233 35799999855555 567888888654
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.9e-20 Score=175.91 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=174.5
Q ss_pred cceeEEEeecCCCE----EEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEE
Q 019603 28 GKINSLDFHRKDDL----LVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 28 ~~V~~l~~s~~~~~----l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
..-+.|+|.+.|.. |+.|..||+|.+||...- +. ..
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~---~~----------------------------------- 104 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IA---NA----------------------------------- 104 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhh--cc---Cc-----------------------------------
Confidence 44578888886654 888889999999986421 00 00
Q ss_pred ccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeee----eecCccEEEEcCCC-CEEEEEEc
Q 019603 104 MYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGIL----RLRGRPTVAFDQQG-LVFAVAME 177 (338)
Q Consensus 104 ~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~ 177 (338)
.-+.+.++..|++.|.+|.|.+... .+|||+.||.|.|||+++-+..... ......+++|+.+- .+|++++.
T Consensus 105 --~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 105 --SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP 182 (1049)
T ss_pred --chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC
Confidence 0112344677999999999999765 8999999999999999864432222 11233457777654 47888999
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCC---cEEEEEccCCeeEEEeeeCCCCCCCeeE
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEA 253 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 253 (338)
+|++.|||+|.. .++..+...+....+..+.|+|+.. .+++++.|+ .|.+||++--.. ....+.+|...+.++
T Consensus 183 sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~Gilsl 259 (1049)
T KOG0307|consen 183 SGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQRGILSL 259 (1049)
T ss_pred CCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-chhhhcccccceeee
Confidence 999999999964 2332222222234578899999865 566666655 488999753221 112335777889999
Q ss_pred EECCCC-CEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEe-ec--ceEEEe
Q 019603 254 TFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA-AS--SVLSFW 314 (338)
Q Consensus 254 ~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s-~s--~~~~iw 314 (338)
.|++.+ .+|+|++.|+.|.+||.++++.+..+.....++..+.|.|...-+++ ++ +.|.|.
T Consensus 260 sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 260 SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 999987 89999999999999999999999999988899999999999984444 44 345544
No 157
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=145.60 Aligned_cols=287 Identities=13% Similarity=0.134 Sum_probs=177.6
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEe-ecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTY-HKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
.+..+|.+|.+.|+++.|..++. |++|..-|.+++|++++.+.+-.+. .+...+..+.. -+..-+ ..-.-+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~--~p~d~l-----~tqgRd 76 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQS--IPNDSL-----DTQGRD 76 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceee--cCCcch-----hhcCCC
Confidence 35668889999999999987665 8999999999999998876543333 11112222211 111111 011334
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCC-----CC----EEEEEECCCe-EEEEECCCcceeeeeeecC----ccE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPV-----ND----SFMSGSLDHS-VRIWDLRVNACQGILRLRG----RPT 162 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~-----~~----~l~Sgs~D~~-I~iWd~~~~~~~~~~~~~~----~~~ 162 (338)
..+-+|++..+..+ .-|.-.++++.|.+. .+ .++.-+.... +.+=|......+....... ...
T Consensus 77 ~~L~lw~ia~s~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 77 PLLILWTIAYSAFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred ceEEEEEccCcceE---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 67888888764433 336666666666532 11 1222111111 1111111110000000000 111
Q ss_pred EEEc---CCC--CEEEEEEcCCeEEEEeCCCCCCC------CCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEE
Q 019603 163 VAFD---QQG--LVFAVAMEAGAIKLFDSRSYDKG------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 231 (338)
Q Consensus 163 ~~~~---~~~--~~~~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~ 231 (338)
.+++ .++ .++++|.++|.+.+||+...... .....-...|...+.++.|.+.-..=+.++.+..+..|.
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 2332 122 36678999999999998764210 000111235677899999987655556777788888887
Q ss_pred ccC--CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-
Q 019603 232 AYG--GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 308 (338)
Q Consensus 232 ~~~--~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s- 308 (338)
+.. +......+..-.+..+..+..-||++.+||+|.|+.||||++++..++..++-|.+.|++|+|+|+...+|++|
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 653 22211111112223577789999999999999999999999999999999999999999999999999999998
Q ss_pred -ceEEEee
Q 019603 309 -SVLSFWI 315 (338)
Q Consensus 309 -~~~~iw~ 315 (338)
..|.+|+
T Consensus 314 D~rISLWk 321 (323)
T KOG0322|consen 314 DARISLWK 321 (323)
T ss_pred CceEEeee
Confidence 4688995
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=150.28 Aligned_cols=228 Identities=17% Similarity=0.264 Sum_probs=177.4
Q ss_pred cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC--CeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEEC
Q 019603 70 HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD--NRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDL 146 (338)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~ 146 (338)
.++.++.|++....++.+ +-++++++|.+.. +..++.+.=-.-+|.+..|.|+|. .++++|..+-...||+
T Consensus 214 ~~I~sv~FHp~~plllva------G~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVA------GLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CCceEEEecCCCceEEEe------cCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 456677765544333333 2248899998864 334555544567899999999998 8999999999999999
Q ss_pred CCcceeeeeeecCc-----cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEE
Q 019603 147 RVNACQGILRLRGR-----PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 221 (338)
Q Consensus 147 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~ 221 (338)
.+.+..+.-.+.+. ....+++++.+++.++..|.|.+.-..+... +..+.+ .+.+..++|+.+++.++++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~Ki---eG~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSFKI---EGVVSDFTFSSDSKELLAS 362 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hheeee---ccEEeeEEEecCCcEEEEE
Confidence 88876554444433 2366789999999999999999987655321 222333 4558899999999999999
Q ss_pred ecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC------CCCeEeEeeCCCCceEEE
Q 019603 222 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN------TRNEVACWNGNIGVVACL 295 (338)
Q Consensus 222 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~------~~~~~~~~~~h~~~v~~l 295 (338)
+.+|.|++||++...+...|.-.+. ..-+.++.|++|+|||+||..|.|.|||.+ +++++..+..-...|++|
T Consensus 363 ~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred cCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 9999999999998887777765554 245778899999999999999999999975 357788888788899999
Q ss_pred EEcCCCceEEeecc
Q 019603 296 KWAPRRAMFVAASS 309 (338)
Q Consensus 296 ~~~p~~~~l~s~s~ 309 (338)
+|+|+.++||.+|.
T Consensus 442 ~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 442 QFNHDAQILAIASR 455 (514)
T ss_pred eeCcchhhhhhhhh
Confidence 99999999999984
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=6.3e-16 Score=140.84 Aligned_cols=292 Identities=24% Similarity=0.451 Sum_probs=210.2
Q ss_pred cceeeccCC-cceeEEEe-ecCCC-EEEEeeC-CCcEEEEEcCC-CeeEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 19 MAAIFSDFG-GKINSLDF-HRKDD-LLVTASD-DDSVRLYDIVS-AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 19 ~~~~~~~h~-~~V~~l~~-s~~~~-~l~s~s~-D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
....+.++. ..+..+.+ ++++. +++..+. |+.+++||... ......+..+...+..+.+++.....+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----- 174 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS----- 174 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecC-----
Confidence 344555533 37777777 88887 6666555 99999999987 666666677777778788877665333221
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceee-eeeecCcc-EEEEcCCCC
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQG-ILRLRGRP-TVAFDQQGL 170 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~-~~~~~~~~-~~~~~~~~~ 170 (338)
..++.+++|+...+..+..+.+|...|.++.|+|+++ .+++++.|+.|++||.+.+.... .+..+... ...|.+++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (466)
T COG2319 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS 254 (466)
T ss_pred CCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCC
Confidence 1358999999999889999999999999999999988 66677999999999988666655 34433322 237899998
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
.+++++.|+.+++|+.+.... ..... .+|...+.++.|+|++..+++++.++.+.+|+..............+...+
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSS-LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331 (466)
T ss_pred EEEEecCCCcEEEeeecCCCc-EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence 888999999999999876443 12122 466788999999998888888888888999987766554444323444467
Q ss_pred eeEEECCCCCEEEEE-cCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEe-ec--ceEEEeeeCCCC
Q 019603 251 TEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA-AS--SVLSFWIPNPSS 320 (338)
Q Consensus 251 ~~~~fs~~~~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s-~s--~~~~iw~~~~~~ 320 (338)
..+.|.+++..++.+ ..|+.+++|++...........+.. +..+.|++ ...++. +. ..+.+|......
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence 888884343566555 7889999999998773333333322 89999999 544444 22 468888766443
No 160
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=9.8e-18 Score=138.43 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=167.9
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
....|.++|.+++|+.||..+++|+.|+.+++||+++++ +..+..|..++..+.|-.........+. .+ ++++|.
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TG-SW---DKTlKf 141 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTG-SW---DKTLKF 141 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEec-cc---ccceee
Confidence 345799999999999999999999999999999999995 4556777788888877654443222222 22 489999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee-eeeee---cCccEEEEcCCCCEEEEEEc
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-GILRL---RGRPTVAFDQQGLVFAVAME 177 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~ 177 (338)
||.+...++.++. -.++|.++..- ...++.+..++.|.+|+|+.+..+ +.+.. ....+++..++..-++.|+-
T Consensus 142 WD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 142 WDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred cccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence 9999877776654 56777766543 357888889999999999765322 11111 12345777777776799999
Q ss_pred CCeEEEEeCCCCCCCCCeeEEec---------CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVG---------GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
.|.+.+..+..... ...|.+. +.-..|+.++|+|....+++.+.||++.+||.....++ +..+.++.
T Consensus 219 EGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL--k~s~~~~q 294 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL--KTSETHPQ 294 (347)
T ss_pred cceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh--hccCcCCC
Confidence 99999887654211 1112111 12346888999999889999999999999997655443 34456678
Q ss_pred CCeeEEECCCCCEEEEE
Q 019603 249 TNTEATFTPDGQYVVSG 265 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sg 265 (338)
++++++|+.+|.++|=+
T Consensus 295 pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 295 PITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccceeEecCCCCEEEEE
Confidence 89999999999988754
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.3e-17 Score=131.58 Aligned_cols=238 Identities=17% Similarity=0.268 Sum_probs=165.7
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCee-------E--eEEeec----ccCeeeEEEeecCCee
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKL-------I--KTTYHK----KHGADCVCFTHHPSSV 84 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~-------~--~~~~~~----~~~~~~~~~~~~~~~~ 84 (338)
.++-.+.+|.++|+.+.|+ +.+|++|++ |.|+=|...+-.. . +...+. -..++.+.+.+....+
T Consensus 53 ~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI 129 (325)
T ss_pred cceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence 3444568999999999998 678898875 9999998753211 1 001111 1134555555554555
Q ss_pred EEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEE
Q 019603 85 ICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVA 164 (338)
Q Consensus 85 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~ 164 (338)
+.+ ++++.++.||+++|+..++++||++.|.++.--..+..+.||++||++|+||.+++++.+++.....+...
T Consensus 130 ~~A------gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 130 LFA------GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL 203 (325)
T ss_pred EEe------cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence 543 34578999999999999999999999999988666778999999999999999999998777654432110
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
.| .....|.+++.+.| .++|+......+|+++..+..+.|.+.
T Consensus 204 -Rp---------------------------------~~g~wigala~~ed---WlvCGgGp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 204 -RP---------------------------------DWGKWIGALAVNED---WLVCGGGPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred -Cc---------------------------------ccCceeEEEeccCc---eEEecCCCceeEEeccCCCceEEEecc
Confidence 00 11223555555443 455666788999999999888888766
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEee
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
.+ +..+.|- .+.++++++.+.|.-|.++ |............+.+..|+-.--.+++.
T Consensus 247 a~---v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ 303 (325)
T KOG0649|consen 247 AR---VHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISI 303 (325)
T ss_pred cc---eeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEe
Confidence 53 5667774 5688889989999999986 34444444445566777776554444443
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.8e-18 Score=148.16 Aligned_cols=199 Identities=18% Similarity=0.336 Sum_probs=150.2
Q ss_pred CCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCC-CCEEEEEEcCCeEEEEeCCCCC
Q 019603 115 GHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYD 190 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~ 190 (338)
+|++.|.+++|...- +.|+|||.|++|++||+.+++|..++..++. +++.|+|. ..++++|+.|++++++|.|...
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 799999999998764 4799999999999999999999888886654 45888875 4688999999999999999633
Q ss_pred CCCCeeEEecCCCCceEEEEEcCCCCE-EEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC-EEEEEcCC
Q 019603 191 KGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGD 268 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~v~~sp~~~~-i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~-~l~sgs~D 268 (338)
..... .. -.+.|-.+.|.|.... ++++..||.++-+|++... .+.+++..|...|..+++++.-+ +|+|+|.|
T Consensus 321 ~s~~~-wk---~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 321 NSGKE-WK---FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred ccCce-EE---eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeecccc
Confidence 32221 11 1456888999998765 5556678999999988654 45678888989999999988765 57889999
Q ss_pred CcEEEEECCC--CCeEeEeeCCCCceEEEEEcCCCceEEee-c--ceEEEeeeCC
Q 019603 269 GTLHAWNINT--RNEVACWNGNIGVVACLKWAPRRAMFVAA-S--SVLSFWIPNP 318 (338)
Q Consensus 269 g~i~vWd~~~--~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s--~~~~iw~~~~ 318 (338)
+.|++|++.. ++.+..-.---+...|.++.|+-.++.+. + ..++||..-.
T Consensus 396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 9999999863 33333221123557889999987755554 4 2478996543
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.1e-18 Score=140.04 Aligned_cols=253 Identities=14% Similarity=0.202 Sum_probs=173.8
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
+..-++|.+|-.+|.+++||+||+.|+|+|.|.+|++||+..|.+++.+.. ..++....|.+.......+.-. .
T Consensus 55 ~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~--~--- 128 (405)
T KOG1273|consen 55 FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIM--E--- 128 (405)
T ss_pred cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEe--c---
Confidence 345668899999999999999999999999999999999999998766433 4567777776665544433211 1
Q ss_pred ceeEEEEccCCeEEEee----cCCccce-EEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcCC
Q 019603 97 ESLRYLSMYDNRILRYF----KGHKERV-ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQ 168 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~----~~H~~~V-~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~ 168 (338)
..-.+.++.++... .+ .+..+.+ .+..|.+.|+++++|..-|.+.++|..+-+|...++... ...+.+..+
T Consensus 129 ~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~ 207 (405)
T KOG1273|consen 129 ESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRK 207 (405)
T ss_pred CCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEecc
Confidence 11122222221110 01 0111111 112588899999999999999999999988887776544 234678899
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCC----CC---eeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccCCeeEEE
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKG----PF---DTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCG 240 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~----~~---~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~~~~ 240 (338)
|..++.-++|+.||.|+++..... .. ..+..--....-.+++|+.+|.|+.+++. ...++||....|..+..
T Consensus 208 g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI 287 (405)
T KOG1273|consen 208 GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI 287 (405)
T ss_pred CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee
Confidence 999999999999999997632111 00 00000001223446789999999887764 46799999988987776
Q ss_pred eeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 241 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 241 ~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
+.+... .....+.|+|--..+++- ..|.+++|....
T Consensus 288 LhG~kg-E~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 288 LHGTKG-EELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ecCCch-hheeecccccceeeeeec-cCCceEEEEeec
Confidence 554332 245678899988888887 678999998753
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=4.1e-18 Score=149.10 Aligned_cols=263 Identities=15% Similarity=0.215 Sum_probs=175.6
Q ss_pred EEeeCCCcEEEEEcCCCeeEeEEeecc--cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC--e--EEEeecCC
Q 019603 43 VTASDDDSVRLYDIVSAKLIKTTYHKK--HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN--R--ILRYFKGH 116 (338)
Q Consensus 43 ~s~s~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~--~~~~~~~H 116 (338)
..+|...+++|||...-...-.+.++. +++..++|..... +..++. +.+..+++|.-... + .+....|.
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~----~gdk~~~~~~K~g~~~~Vp~~~k~~gd 80 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASM----AGDKVMRIKEKDGKTPEVPRVRKLTGD 80 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeec----CCceeEEEecccCCCCccceeeccccc
Confidence 334445679999986543322223332 2344455543322 333332 34567788865432 1 12233333
Q ss_pred ccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCC
Q 019603 117 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 194 (338)
Q Consensus 117 ~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 194 (338)
.-.|++......++++||..++|+|||++...+.+.++.+...+ +.++....++++++..|.|-|-...+....
T Consensus 81 --~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-- 156 (673)
T KOG4378|consen 81 --NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-- 156 (673)
T ss_pred --hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc--
Confidence 22334333344899999999999999999776766666555433 556667789999999999998887654321
Q ss_pred eeEEecCCCCceEEEEEcCCCCEEE-EEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCC-CEEEEEcCCCcEE
Q 019603 195 DTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLH 272 (338)
Q Consensus 195 ~~~~~~~~~~~i~~v~~sp~~~~i~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~ 272 (338)
..+. .+....+..+.|+|..+.++ +++.+|.|.+||........-+ .+.|..+...++|+|.+ .+|++.|-|+.|+
T Consensus 157 t~f~-~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 157 TTFT-IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred ccee-cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCCccceEEEecccceEE
Confidence 1121 22344567899999888655 5667889999998765544322 24566788889999966 5678899999999
Q ss_pred EEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 273 AWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 273 vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
+||..+++...++. ...+...|+|+|+|.+|++|....+|..++
T Consensus 235 ~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 235 IYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred Eeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 99999888777765 346788999999999999998766655443
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=9.3e-18 Score=143.11 Aligned_cols=206 Identities=15% Similarity=0.220 Sum_probs=154.5
Q ss_pred eeccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCe-------eEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 22 IFSDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAK-------LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
.+.||+++|..++|+| ++..++|||+|.+|+||.+..+- .+..+.+|...|..+.|++....++.+ .
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls-----a 150 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS-----A 150 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh-----c
Confidence 4579999999999999 56689999999999999986542 244566777777777776654444433 2
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcCCCC
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGL 170 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~ 170 (338)
+.+.++.+|++.+++.+-++. |.+.|++++|+.+|.+|++.+.|+.|||||.++++....-..|. ..-+.|-.+|.
T Consensus 151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 456899999999999888887 99999999999999999999999999999999998765443332 23366777788
Q ss_pred EEEEE---EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCC
Q 019603 171 VFAVA---MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGG 235 (338)
Q Consensus 171 ~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~ 235 (338)
++.+| ..++.+-+||...... +.....+. ....|.---|.||...+..++ .|+.|+.|.....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~e-P~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEE-PIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeeeccccccccceeccCcccccC-cceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 66665 3568889999776544 33222332 234455556889988777666 4788999986543
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=6.9e-18 Score=152.48 Aligned_cols=230 Identities=18% Similarity=0.259 Sum_probs=168.7
Q ss_pred cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc
Q 019603 70 HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149 (338)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~ 149 (338)
+.+.-++|.++++.++.++ |..+.++|..+|..+++++||++.|.+++|+.+|+.++||+.|+.|.+|..+-.
T Consensus 13 hci~d~afkPDGsqL~lAA-------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred cchheeEECCCCceEEEec-------CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 3566788999988887654 378999999999999999999999999999999999999999999999987544
Q ss_pred ceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEE
Q 019603 150 ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i 229 (338)
-..+--..+...+.+|+|-...+++++-. ..-+|...... .... .....++++.|..||++++.|-.+|+|.+
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~---V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS---VSKH---KSSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh---HHhh---hhheeEEEeeecCCCcEEEEeccCceEEe
Confidence 43333333445678899987777766532 23345432111 0000 11345888999999999999999999999
Q ss_pred EEccCCeeEEEeeeCCCCCCCeeE----------------------------------------------EECCCCCEEE
Q 019603 230 LDAYGGEKRCGFSLEPSPNTNTEA----------------------------------------------TFTPDGQYVV 263 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~fs~~~~~l~ 263 (338)
-+....++...-+.-+.+.++.++ .+.++|.|++
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEE
Confidence 876544443332222222333333 3447899999
Q ss_pred EEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEe
Q 019603 264 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 314 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw 314 (338)
.||.|+.++++-. .|-.+.++.....+||.++.+|+++.++.|+ +++..+
T Consensus 239 iGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred EccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 9999999999976 4566777777789999999999999999986 566544
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.2e-17 Score=154.10 Aligned_cols=282 Identities=15% Similarity=0.289 Sum_probs=190.6
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecc---cCeeeEEEeecCC-eeEEecCccCCCCCceeEEEEc
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKK---HGADCVCFTHHPS-SVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
+-..+.|+|=...++++.+...|++||.+.++.+..+.... ..|..+.+-...+ .++.. .++++.||+|+-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLt-----as~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLT-----ASSDGVIRIWKD 1140 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheee-----eccCceEEEecc
Confidence 34567888888899999888899999999998876543322 2344444432222 22211 245689999987
Q ss_pred cCC-----eEEEeec---CC----ccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE-EEEc---CC
Q 019603 105 YDN-----RILRYFK---GH----KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFD---QQ 168 (338)
Q Consensus 105 ~~~-----~~~~~~~---~H----~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-~~~~---~~ 168 (338)
.-. +.+.-+. ++ .+.-.=+.|.....+|+++|.-..|||||..++.+...+......+ -+++ ..
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 532 2333222 22 1211224677777778877778999999998877766665544332 2233 35
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCc--eEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEEeeeCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEP 245 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~~~~ 245 (338)
|.++++|..||.+++||.|........ .....|+.. |..+.+.+.|- .+++++.+|.|++||++.......+....
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v-~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLV-CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccc-eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 789999999999999998864432111 112234444 89999988665 49999999999999998753333222222
Q ss_pred C--CC-CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe-------eCCCCceEEEEEcCCCceEEeec--ceEEE
Q 019603 246 S--PN-TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-------NGNIGVVACLKWAPRRAMFVAAS--SVLSF 313 (338)
Q Consensus 246 ~--~~-~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~l~s~s--~~~~i 313 (338)
+ .+ ..+++..+++...+|||+. +.|+||++.- +.+..+ ....+.+.||+|||-..++|+|+ ..+.|
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 2 23 4788999999999999998 9999999963 333322 23457889999999999999996 46777
Q ss_pred eeeCC
Q 019603 314 WIPNP 318 (338)
Q Consensus 314 w~~~~ 318 (338)
....+
T Consensus 1378 Ys~~k 1382 (1387)
T KOG1517|consen 1378 YSCEK 1382 (1387)
T ss_pred eecCC
Confidence 75443
No 168
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=7.3e-17 Score=133.66 Aligned_cols=231 Identities=16% Similarity=0.234 Sum_probs=165.0
Q ss_pred ccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEE
Q 019603 24 SDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
..|+.++.+++|.+ ...+++|+-|+.|+.+|+.++... .+..|..++.|+........++.++ + |++|++||
T Consensus 51 ~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgs---W---D~~ik~wD 122 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGS---W---DKTIKFWD 122 (323)
T ss_pred eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcc---c---CccEEEEe
Confidence 37999999999987 667899999999999999988764 3455667888888876555555432 2 38999999
Q ss_pred ccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec----CccEEEEcCCCCEEEEEEcCC
Q 019603 104 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----GRPTVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 104 ~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dg 179 (338)
.........+. ..++|.++... ++.|+.|..|..+.+||+|+-......+.. ...++++.|++.=+++++-||
T Consensus 123 ~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 123 PRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred ccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc
Confidence 98644444443 34488877664 678999999999999999875432211111 234577888877788888899
Q ss_pred eEEEEeCCCCCCCCCeeEEecCC---------CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGD---------TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~---------~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
.+.+=.+......+-..+....| -.+|++++|+|-...+++++.||.|.+||....+... ++++.+..|
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~--q~~~~~~SI 277 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK--QLAKYETSI 277 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh--hccCCCCce
Confidence 88764333221100001111111 2468899999998889999999999999987665444 344445678
Q ss_pred eeEEECCCCCEEEEEcC
Q 019603 251 TEATFTPDGQYVVSGSG 267 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~ 267 (338)
..++|+.+|..||.++.
T Consensus 278 ~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEEeccCCCeEEEEec
Confidence 89999999999999874
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=3.1e-15 Score=133.85 Aligned_cols=269 Identities=10% Similarity=0.129 Sum_probs=169.0
Q ss_pred EEeeCCCcEEEEEcCC-Ce--eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC-CeE--EEeecCC
Q 019603 43 VTASDDDSVRLYDIVS-AK--LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD-NRI--LRYFKGH 116 (338)
Q Consensus 43 ~s~s~D~~i~iWd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--~~~~~~H 116 (338)
++...|++|.+||+.+ ++ .++.+. .......+.+++++..++++.. ..+.+..|++.+ ++. +.... .
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~-----~~~~i~~~~~~~~g~l~~~~~~~-~ 78 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVR-----PEFRVLSYRIADDGALTFAAESP-L 78 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEEC-----CCCcEEEEEECCCCceEEeeeec-C
Confidence 4446799999999964 43 333332 2234566778777766655432 236788888863 332 22221 3
Q ss_pred ccceEEEEEcCCCCEEEEEE-CCCeEEEEECCC-cce---eeeeee-cCccEEEEcCCCCEEE-EEEcCCeEEEEeCCCC
Q 019603 117 KERVISLCMSPVNDSFMSGS-LDHSVRIWDLRV-NAC---QGILRL-RGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSY 189 (338)
Q Consensus 117 ~~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~-~~~---~~~~~~-~~~~~~~~~~~~~~~~-~~~~dg~i~i~d~~~~ 189 (338)
.+....+.++|+++++++++ .++.|.+||+.. +.. ...+.. .....+.++|++..++ +...++.|.+||+...
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 33567899999999888776 489999999863 222 121211 1223467899998765 5556799999998652
Q ss_pred CCC-CC--eeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccC--Cee--EEEeeeCC----CCCCCeeEEECC
Q 019603 190 DKG-PF--DTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG--GEK--RCGFSLEP----SPNTNTEATFTP 257 (338)
Q Consensus 190 ~~~-~~--~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~--~~~--~~~~~~~~----~~~~~~~~~fs~ 257 (338)
..- +. ..... ........+.|+|++++++++.. ++.|.+|+... ++. .......+ .......+.|+|
T Consensus 159 g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 110 00 00111 11223567899999999887776 89999999863 322 21221111 112334688999
Q ss_pred CCCEEEEEc-CCCcEEEEECCCCCeEeEeeCCC---CceEEEEEcCCCceEEeec---ceEEEeeeCCC
Q 019603 258 DGQYVVSGS-GDGTLHAWNINTRNEVACWNGNI---GVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 319 (338)
Q Consensus 258 ~~~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~h~---~~v~~l~~~p~~~~l~s~s---~~~~iw~~~~~ 319 (338)
+|++|+++. .++.|.+|++.+......+.++. .....++|+|++++|+++. .++.+|..+..
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 999999885 47899999996543222222221 2456899999999998875 47999987643
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=6.1e-17 Score=138.61 Aligned_cols=263 Identities=17% Similarity=0.263 Sum_probs=162.8
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcC--------C-----C---eeEeEEeecccCeeeEEEeecC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIV--------S-----A---KLIKTTYHKKHGADCVCFTHHP 81 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~--------~-----~---~~~~~~~~~~~~~~~~~~~~~~ 81 (338)
.-.+.|..|.++|++++|+|+|++|+||++++.+.+|-.. + . ...+....|...+.-++|+++.
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS 135 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence 3467889999999999999999999999999999999765 2 1 1123344455667777777766
Q ss_pred CeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc
Q 019603 82 SSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP 161 (338)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~ 161 (338)
..+..+ +.++++++||+..|.....+.+|...|..++|.|-++++++=|.|...+.+.++..+.+........+
T Consensus 136 ~~l~s~------s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 136 NFLVSG------SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred ceeeee------eccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 555443 34589999999999999999999999999999999999999999998888877554332211110000
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec----C-----CcEEEEEc
Q 019603 162 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT----N-----NNIYVLDA 232 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~----d-----~~i~i~~~ 232 (338)
.-.+.+. .....++|-=++. ..-...++|+|+|..+++.+. . +..++++.
T Consensus 210 ~~~~~~~--------e~~s~rLfhDeTl-------------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr 268 (434)
T KOG1009|consen 210 AKAFNER--------EGKSTRLFHDETL-------------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR 268 (434)
T ss_pred ecccCCC--------CcceeeeeecCch-------------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc
Confidence 0011111 0112222211110 001223456677666554322 1 22334332
Q ss_pred cCCeeEEEeeeCCCCCCCeeEEECC-----------------CCCEEEEEcCCCcEEEEECCCCCeEeEe-eCCCCceEE
Q 019603 233 YGGEKRCGFSLEPSPNTNTEATFTP-----------------DGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVAC 294 (338)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~fs~-----------------~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~ 294 (338)
.. -.....++..-......+.|+| --+.++.-..-..|+|||..+.++.... .-|=..|+.
T Consensus 269 k~-l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTD 347 (434)
T KOG1009|consen 269 KD-LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITD 347 (434)
T ss_pred cc-ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecc
Confidence 10 0111111111111222333332 1233333344568999999987777665 357889999
Q ss_pred EEEcCCCceEEeec
Q 019603 295 LKWAPRRAMFVAAS 308 (338)
Q Consensus 295 l~~~p~~~~l~s~s 308 (338)
++|++||..++..|
T Consensus 348 iaws~dg~~l~vSS 361 (434)
T KOG1009|consen 348 IAWSDDGSVLLVSS 361 (434)
T ss_pred eeecCCCcEEEEec
Confidence 99999999888876
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.8e-17 Score=137.82 Aligned_cols=229 Identities=15% Similarity=0.222 Sum_probs=154.7
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcC--CC
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQ--QG 169 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~--~~ 169 (338)
+++++||..+++.+..|++|...++.+.|..+ ...+.||+.||+||+||+|.......+.... .+-.+|+. ++
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence 78999999999999999999999999999763 4679999999999999999876544444322 33455555 56
Q ss_pred CEEEEEE----cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCCeeEE-Eeee
Q 019603 170 LVFAVAM----EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRC-GFSL 243 (338)
Q Consensus 170 ~~~~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~~~~~-~~~~ 243 (338)
.++++|. .+-.+.+||.|..++. ...+...|...|++++|+|.. ..+++++.||.|-+||....+--. ....
T Consensus 130 ~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 130 NIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV 207 (376)
T ss_pred CeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence 6777775 4678899999975431 223456788899999999965 578899999999999975432110 0111
Q ss_pred CCCCCCCeeEEECCCC-CEEEEEcCCCcEEEEECCCC-------------------------------------------
Q 019603 244 EPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTR------------------------------------------- 279 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~------------------------------------------- 279 (338)
..+...|..+.|..++ +.+.+-+..++..+|+++.+
T Consensus 208 iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~ 287 (376)
T KOG1188|consen 208 INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD 287 (376)
T ss_pred hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc
Confidence 1112224444444443 22444444444444444332
Q ss_pred ------------------CeEeEeeC-CCCceEEEEEcCCCceEEeec--ceEEEeeeCCCCCCCCCCC
Q 019603 280 ------------------NEVACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 327 (338)
Q Consensus 280 ------------------~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~~~~~~~~~ 327 (338)
+.+..+.+ |...|.++.|.-.+.++.+|+ +.+.+|..+.++...-..+
T Consensus 288 ~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e~~~s~~ 356 (376)
T KOG1188|consen 288 SNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATEINFSWT 356 (376)
T ss_pred cCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCccccccccc
Confidence 22333444 677888888988889999997 4688998665555544443
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.1e-18 Score=161.68 Aligned_cols=215 Identities=20% Similarity=0.277 Sum_probs=164.7
Q ss_pred HhccccceeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
..+...+.++..|+|.|.+|.|++... +|+||++||.|.|||+..-+.- ++. .
T Consensus 103 ~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--------------~~~--~---------- 156 (1049)
T KOG0307|consen 103 NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--------------FTP--G---------- 156 (1049)
T ss_pred CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--------------CCC--C----------
Confidence 345567788899999999999999655 9999999999999999742210 000 0
Q ss_pred CCCCceeEEEEccCCeEEEeecCCccceEEEEEcCC-CCEEEEEECCCeEEEEECCCcceeeeeeecCc----cEEEEcC
Q 019603 93 DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----PTVAFDQ 167 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~----~~~~~~~ 167 (338)
-..-.+.|.+|+|... ...|+|++.+|.+-|||+|.++.+-.+...+. ..+.|+|
T Consensus 157 --------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 157 --------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred --------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence 0123467888888764 45799999999999999998865433333222 3588999
Q ss_pred CCC-EEEEEEcC---CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCCeeEEEee
Q 019603 168 QGL-VFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 168 ~~~-~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
++. .+++++.| -.|++||+|... .+... ..+|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+.
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~as-sP~k~--~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFAS-SPLKI--LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccC-Cchhh--hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 874 77777765 478999998643 33322 35789999999999977 788999999999999999999887555
Q ss_pred eCCCCCCCeeEEECCCCC-EEEEEcCCCcEEEEECCCC
Q 019603 243 LEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~~ 279 (338)
. ..+++..+.|+|... .++.++-||.|.|+.+...
T Consensus 294 ~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 294 A--QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred C--CCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 4 446899999999887 6777899999999998754
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=4.7e-17 Score=147.14 Aligned_cols=248 Identities=15% Similarity=0.249 Sum_probs=165.0
Q ss_pred HHHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCc
Q 019603 11 DETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 11 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
-=+.+.-.+.++|++|++-|++++|+.||+.++||+.|+.+.+|+..-.-.++ +.|...+.|+.|++-...++..+-
T Consensus 37 iyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsL- 113 (1081)
T KOG1538|consen 37 VYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSL- 113 (1081)
T ss_pred EEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcch-
Confidence 33556777889999999999999999999999999999999999865332232 445566777777664433332110
Q ss_pred cCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--c--EEEEc
Q 019603 91 NLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--P--TVAFD 166 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~--~~~~~ 166 (338)
.-..+|........+ . .-..+|.+++|..||.+++-|-.+|+|.|=+-...+...+-+..+. + .++++
T Consensus 114 ------sdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 114 ------SDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred ------hhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEec
Confidence 123345443322211 1 1245788899999999999999999999987543333332222222 2 36677
Q ss_pred CCC-----CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe
Q 019603 167 QQG-----LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 167 ~~~-----~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~ 241 (338)
|.. ..+++..-..++-++.+.....+. ...-...-.|+.+-|+|++++.|+.|+...+|... |-. .-
T Consensus 186 p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk-----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-Gvr--LG 257 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVADWGQTLSFYQLSGKQIGK-----DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVR--LG 257 (1081)
T ss_pred CCCCCCccceEEEEeccceeEEEEecceeecc-----cccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeE--Ee
Confidence 643 344444444444444332100000 00123456788999999999999999999999642 322 22
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
+.-....++..+...|++++++.|..||+|-++|+.
T Consensus 258 Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 258 TVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 233356799999999999999999999999999975
No 174
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.5e-15 Score=125.99 Aligned_cols=205 Identities=16% Similarity=0.294 Sum_probs=147.6
Q ss_pred cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc----ceeeeeeecCccEE--EEc-C-CCCEEEEEEcCCeEEEEe
Q 019603 114 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----ACQGILRLRGRPTV--AFD-Q-QGLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 114 ~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~----~~~~~~~~~~~~~~--~~~-~-~~~~~~~~~~dg~i~i~d 185 (338)
.+|++-|.++.|.+-|+.+|+||.|++|+|||.++. .|....+.++..++ .|- | =|.++++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 579999999999999999999999999999997654 34555666666553 332 3 478999999999999997
Q ss_pred CC--CCCCCC---CeeEEecCCCCceEEEEEcCC--CCEEEEEecCCcEEEEEccCCeeEEEeee----C-------CCC
Q 019603 186 SR--SYDKGP---FDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSL----E-------PSP 247 (338)
Q Consensus 186 ~~--~~~~~~---~~~~~~~~~~~~i~~v~~sp~--~~~i~~~~~d~~i~i~~~~~~~~~~~~~~----~-------~~~ 247 (338)
-. ...... .....+......|++++|.|. |-.+++++.||.++||+....-....+++ . .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 111110 111122345678999999996 55788999999999998654322222221 1 123
Q ss_pred CCCeeEEECCC---CCEEEEEcCC-----CcEEEEECCCC----CeEeEeeCCCCceEEEEEcCCC----ceEEeecce-
Q 019603 248 NTNTEATFTPD---GQYVVSGSGD-----GTLHAWNINTR----NEVACWNGNIGVVACLKWAPRR----AMFVAASSV- 310 (338)
Q Consensus 248 ~~~~~~~fs~~---~~~l~sgs~D-----g~i~vWd~~~~----~~~~~~~~h~~~v~~l~~~p~~----~~l~s~s~~- 310 (338)
....++.|+|. .++||.|+.+ +.++||...+. ..+..+.+|...|+.|+|.|+- .++|+++..
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 45667888864 4678877765 48999988643 4567788999999999999973 378888765
Q ss_pred EEEeeeCC
Q 019603 311 LSFWIPNP 318 (338)
Q Consensus 311 ~~iw~~~~ 318 (338)
++||.+-+
T Consensus 250 v~I~~v~~ 257 (361)
T KOG2445|consen 250 VRIFKVKV 257 (361)
T ss_pred EEEEEEee
Confidence 99997654
No 175
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-16 Score=137.98 Aligned_cols=197 Identities=21% Similarity=0.272 Sum_probs=141.2
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEE
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (338)
..++|+.+|..|++++.||++|+|++..-. .+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~------------------------------------------------t~ 179 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML------------------------------------------------TI 179 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch------------------------------------------------hh
Confidence 678888888888888888888888854221 12
Q ss_pred EeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc----cEEEEcCCC---C--EEEEEEcCCeE
Q 019603 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----PTVAFDQQG---L--VFAVAMEAGAI 181 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~----~~~~~~~~~---~--~~~~~~~dg~i 181 (338)
.....|.+.|.++.|+||++.|+|-+.| ..+||+++++.++......+. ..+.|..++ . +++....-+.+
T Consensus 180 l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v 258 (398)
T KOG0771|consen 180 LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGV 258 (398)
T ss_pred hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCce
Confidence 2345699999999999999999999999 899999999865433332221 124455544 2 23333445677
Q ss_pred EEEeCCCCCCCCCee-EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC
Q 019603 182 KLFDSRSYDKGPFDT-FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~-~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 260 (338)
+.+|+.......+.. .........|++++.+++|++++.++.+|.|.|++..+-+.. .+..+.|...|+.+.|+|+.+
T Consensus 259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSR 337 (398)
T ss_pred eEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcC
Confidence 777765443321100 001122346999999999999999999999999997655433 344466777899999999999
Q ss_pred EEEEEcCCCcEEEEECC
Q 019603 261 YVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~ 277 (338)
++++.+.|..++|-.+.
T Consensus 338 ~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 338 YLASVSSDNEAAVTKLA 354 (398)
T ss_pred cccccccCCceeEEEEe
Confidence 99999999999988875
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.5e-16 Score=141.34 Aligned_cols=204 Identities=15% Similarity=0.256 Sum_probs=161.3
Q ss_pred eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC--------cceeeeeeecCccE--EEEcCCCCEEEEEEcCCeE
Q 019603 112 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV--------NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 181 (338)
Q Consensus 112 ~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~i 181 (338)
++..|.+.|+.+.|+|....|++|+.|++|++|++.. -+.+.+|..|..++ +++.+++..+.+|+.||.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 6778999999999999999999999999999999932 12344566666664 5677899999999999999
Q ss_pred EEEeCCCCCCCCCee-------EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC----------
Q 019603 182 KLFDSRSYDKGPFDT-------FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE---------- 244 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~-------~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~---------- 244 (338)
+.|++- ....+.+. -.+.||+..+..+.+|+....+++++.|++++.|+...... +.|...
T Consensus 369 ~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccC-CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999765 22222221 12458899999999999988999999999999998654332 111100
Q ss_pred ----------------------------------------CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeE
Q 019603 245 ----------------------------------------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 284 (338)
Q Consensus 245 ----------------------------------------~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~ 284 (338)
.....+..+..+|.+...+++.+|+.|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 0002234566788899999999999999999999999999
Q ss_pred eeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 285 WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 285 ~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
...|...++++++.|+|.+|++++ +.+.+|...
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 999999999999999999999997 578888653
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=4.7e-15 Score=137.36 Aligned_cols=263 Identities=14% Similarity=0.209 Sum_probs=179.5
Q ss_pred CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE--EE----eecCCccceEE
Q 019603 49 DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI--LR----YFKGHKERVIS 122 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~----~~~~H~~~V~~ 122 (338)
..+.+|++...............+.++.|.+....+++++.+ .+.|-+||+..+.. .. ....|+.+|+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y-----~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCY-----NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeecc-----CceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 479999997663333334445678888887655555544433 28899999986544 21 22469999999
Q ss_pred EEEcCCCC--EEEEEECCCeEEEEECCCcce-ee-----eee--------ecCccEEEEcC-CCCEEEEEEcCCeEEEEe
Q 019603 123 LCMSPVND--SFMSGSLDHSVRIWDLRVNAC-QG-----ILR--------LRGRPTVAFDQ-QGLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 123 l~~~~~~~--~l~Sgs~D~~I~iWd~~~~~~-~~-----~~~--------~~~~~~~~~~~-~~~~~~~~~~dg~i~i~d 185 (338)
+.|..+.. -|+|+|.||.|+.|+++.-.. .. ... ..+...+.|.+ +-..+++|+.+|.|.--.
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGC 376 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEe
Confidence 99976544 499999999999998864322 11 111 11223466766 445899999999987743
Q ss_pred CCCCCCCC---Ce-eEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC-
Q 019603 186 SRSYDKGP---FD-TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ- 260 (338)
Q Consensus 186 ~~~~~~~~---~~-~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~- 260 (338)
-..+...+ +. ......|.+.|..+.++|-+..++.++.|.+++||.... .....+....+...+++++|||--.
T Consensus 377 r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~-~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 377 RKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV-IASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred ccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC-CCCcchhhhhccceeeeeEEcCcCce
Confidence 22222211 00 111224678899999999988777666699999997541 2223344455556699999999764
Q ss_pred EEEEEcCCCcEEEEECCC--CCeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEeeeC
Q 019603 261 YVVSGSGDGTLHAWNINT--RNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIPN 317 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~~--~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~~~ 317 (338)
.|+++..||.|.+||+.. .+++...+.+....+.++|++.++.++.|+. ++.++..+
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 577888999999999974 3556666666778888999999999999984 56666654
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.5e-16 Score=139.92 Aligned_cols=201 Identities=16% Similarity=0.283 Sum_probs=153.8
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCC--EEEEEEcCCeEEEE
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGL--VFAVAMEAGAIKLF 184 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~dg~i~i~ 184 (338)
.+...++||++.|.+|+..|.|.+|+|||.||+||||.+.++.|+.++.+.+. .+++|+|.+. +++++.... +.|.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 34556899999999999999999999999999999999999999999988764 5789998764 555555444 5555
Q ss_pred eCCCCC-----------------CCC----------------CeeEEecCCCCceEEEEEcCCCCEEEEEecC---CcEE
Q 019603 185 DSRSYD-----------------KGP----------------FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIY 228 (338)
Q Consensus 185 d~~~~~-----------------~~~----------------~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d---~~i~ 228 (338)
+..-+. ..+ ......-.+...|..|.|+..|.|+++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 422110 000 0001122356678899999999999987764 4688
Q ss_pred EEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 229 i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
|.++........|+.. .+.+.++.|+|...+|+.++. ..|||||+..+..++.+.--..+|..++.||.|..|+.++
T Consensus 550 iHQLSK~~sQ~PF~ks--kG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKS--KGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhc--CCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 8888766555555433 356889999999999988764 6899999999988888887788999999999999999998
Q ss_pred ceEE
Q 019603 309 SVLS 312 (338)
Q Consensus 309 ~~~~ 312 (338)
..-+
T Consensus 627 ~d~k 630 (733)
T KOG0650|consen 627 YDKK 630 (733)
T ss_pred CCCe
Confidence 5443
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.1e-15 Score=139.38 Aligned_cols=234 Identities=16% Similarity=0.204 Sum_probs=160.1
Q ss_pred CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE--EEeecCCccceEEEEE
Q 019603 48 DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI--LRYFKGHKERVISLCM 125 (338)
Q Consensus 48 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~H~~~V~~l~~ 125 (338)
+..|.+||..... .+.+..+...+....|++++..++..+. ......+++|++.+++. +..+.+|. ..+.|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~---~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSF---ENKKSQLVVHDLRSGARKVVASFRGHN---GAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEe---cCCCcEEEEEeCCCCceEEEecCCCcc---CceeE
Confidence 5789999986544 3444455556778889998887776542 22235799999987753 44455554 35799
Q ss_pred cCCCCEEEEE-ECCCeEEEE--ECCCcceeeeeeecC--ccEEEEcCCCCEEEEEE-cCCeEEEEeCCCCCCCCCeeEEe
Q 019603 126 SPVNDSFMSG-SLDHSVRIW--DLRVNACQGILRLRG--RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLV 199 (338)
Q Consensus 126 ~~~~~~l~Sg-s~D~~I~iW--d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~ 199 (338)
+|+++.|+.+ +.|+.+.|| |+..++... +..+. .....|+|+|..++..+ .++..+||++..... .. . .+
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~-~~-~-~l 331 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG-GA-S-LV 331 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC-Ce-E-Ee
Confidence 9999988765 468876666 665554322 22221 23478999999766544 578889998653221 11 1 12
Q ss_pred cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC--
Q 019603 200 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-- 277 (338)
Q Consensus 200 ~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~-- 277 (338)
++.. ....|+|+|+++++.+.+ .+.+||+.+++...... .. ......|+|||++|+.++.++.+++|.+.
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~--~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSS--TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecC--CC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 2222 346799999999888764 56678988776442211 11 23567899999999999999999988863
Q ss_pred CCCeEeEeeCCCCceEEEEEcCC
Q 019603 278 TRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 278 ~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
+++.++.+.+|.+.+...+|+|-
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceEEccCCCCCCCCcccCCC
Confidence 57888889999999999999985
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=6.6e-16 Score=127.04 Aligned_cols=195 Identities=15% Similarity=0.225 Sum_probs=140.6
Q ss_pred CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee-eeeeecC-------ccEEEEcC--CCCEEEEEEcCCeEEEE
Q 019603 115 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-GILRLRG-------RPTVAFDQ--QGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~-~~~~~~~-------~~~~~~~~--~~~~~~~~~~dg~i~i~ 184 (338)
.|-++|.|+-|.|++..+++-. |..|.+|++.....+ ..+.... -..-.|+| +|..++ ...|++++.|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEE
Confidence 4667999999999999998876 899999999765432 1111111 11245777 455554 4578999999
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCE-EEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC-CCEE
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYV 262 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~-i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~-~~~l 262 (338)
|.|+..+. ..+ ...|...+..+.|+|+.++ +++++.|+.|+|||.+..+ ...+++++|..++.++.|+|- .+++
T Consensus 199 D~RT~~~~--~sI-~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 199 DLRTMKKN--NSI-EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred Eccchhhh--cch-hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-ccccccCCCceEEEEEEecCccceEE
Confidence 99976531 111 1246667999999999775 5677788999999976443 345677888899999999985 5778
Q ss_pred EEEcCCCcEEEEECCCC-----------------------------CeEeEeeCCCCceEEEEEcCCCceEEe-ecceEE
Q 019603 263 VSGSGDGTLHAWNINTR-----------------------------NEVACWNGNIGVVACLKWAPRRAMFVA-ASSVLS 312 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~-----------------------------~~~~~~~~h~~~v~~l~~~p~~~~l~s-~s~~~~ 312 (338)
+|||.|..|.+|...+- ..+.++..|..+|++++|+.-.+++++ -|...+
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 89999999999975421 013357789999999999998886655 465555
Q ss_pred Eee
Q 019603 313 FWI 315 (338)
Q Consensus 313 iw~ 315 (338)
+.+
T Consensus 355 viI 357 (370)
T KOG1007|consen 355 VII 357 (370)
T ss_pred EEe
Confidence 443
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.4e-16 Score=129.38 Aligned_cols=257 Identities=17% Similarity=0.257 Sum_probs=159.0
Q ss_pred ccceeeccCCcceeEEEeec--CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecc-cCeeeEEEeec-CCeeEEecCccCC
Q 019603 18 AMAAIFSDFGGKINSLDFHR--KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKK-HGADCVCFTHH-PSSVICSTKYNLD 93 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 93 (338)
+....|++|.+.++.++|.. ....+.||+.||+||+||++.......+.-.. .+..+.+|..+ ...+++... -..
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~Gt-E~~ 139 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGT-ELT 139 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecc-ccc
Confidence 34557889999999999987 45689999999999999997654332221111 22344555443 333443321 223
Q ss_pred CCCceeEEEEccCCeE-EEe-ecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcce----eeeeeec-CccEEEE
Q 019603 94 STGESLRYLSMYDNRI-LRY-FKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC----QGILRLR-GRPTVAF 165 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~-~~~-~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~----~~~~~~~-~~~~~~~ 165 (338)
.++..+.+||++..+. +.. ...|.+-|+++.|+|.+ +.|+|||-||.|.+||++.... ..++... +...+.|
T Consensus 140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw 219 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGW 219 (376)
T ss_pred cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeee
Confidence 3456799999987654 443 46799999999999976 5899999999999999975432 1222221 1234677
Q ss_pred cCCCC-EEEEEEcCCeEEEEeCCCCCCCC---CeeEEec-----CCCCceEEEEEcC-CCCEEEEEec-CCcEEEEEc--
Q 019603 166 DQQGL-VFAVAMEAGAIKLFDSRSYDKGP---FDTFLVG-----GDTAEVCDIKFSN-DGKSMLLTTT-NNNIYVLDA-- 232 (338)
Q Consensus 166 ~~~~~-~~~~~~~dg~i~i~d~~~~~~~~---~~~~~~~-----~~~~~i~~v~~sp-~~~~i~~~~~-d~~i~i~~~-- 232 (338)
..+++ .+.+-+.+....+|+++...... ...+... .....+... .+| +....++++. -++..++-+
T Consensus 220 ~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~ 298 (376)
T KOG1188|consen 220 LSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVD 298 (376)
T ss_pred ecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeee
Confidence 77773 67778888899999987543210 0000000 001111111 234 3344454444 455444422
Q ss_pred -cCCeeEE-EeeeCC-CCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 233 -YGGEKRC-GFSLEP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 233 -~~~~~~~-~~~~~~-~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
.++.... ...+++ |...|.++.|...+..++|||+||.+.+|..
T Consensus 299 ~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 299 TSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 2222211 112233 4456677888889999999999999999996
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=1.8e-13 Score=122.43 Aligned_cols=250 Identities=12% Similarity=0.192 Sum_probs=156.5
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEee-CCCcEEEEEcC-CCee--EeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTAS-DDDSVRLYDIV-SAKL--IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s-~D~~i~iWd~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
.+..+. +.+....+.|+|++++|+.++ .++.|.+|++. +++. +.... .......+.+++++..++.+..
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~----- 99 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASY----- 99 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEc-----
Confidence 444453 456678899999999887664 58899999996 3432 22211 1223445667766666665432
Q ss_pred CCceeEEEEccC-C---eEEEeecCCccceEEEEEcCCCCEEE-EEECCCeEEEEECCCcc-ee----eeee---ecCcc
Q 019603 95 TGESLRYLSMYD-N---RILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNA-CQ----GILR---LRGRP 161 (338)
Q Consensus 95 ~~~~i~~~~~~~-~---~~~~~~~~H~~~V~~l~~~~~~~~l~-Sgs~D~~I~iWd~~~~~-~~----~~~~---~~~~~ 161 (338)
.++.+.+|++.+ + +.+..+. +.....++.++|++++++ +...++.|.+||+.+.. +. .... ..+..
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 247899999863 3 2233333 233467788999998874 55677999999997632 21 1111 11223
Q ss_pred EEEEcCCCCEEEEEEc-CCeEEEEeCCCCCCCCC---eeEEecC----CCCceEEEEEcCCCCEEEEEec-CCcEEEEEc
Q 019603 162 TVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPF---DTFLVGG----DTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDA 232 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~---~~~~~~~----~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~ 232 (338)
.+.|+|+|.++.++.. ++.|.+|++.... ..+ ....... .......+.++|++++++++.. ++.|.+|+.
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 5889999998877766 8999999986321 111 1111000 1112346889999999888754 678999987
Q ss_pred cCCeeEEEeeeC-CCCCCCeeEEECCCCCEEEEEcC-CCcEEEEECC
Q 019603 233 YGGEKRCGFSLE-PSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNIN 277 (338)
Q Consensus 233 ~~~~~~~~~~~~-~~~~~~~~~~fs~~~~~l~sgs~-Dg~i~vWd~~ 277 (338)
........+... .-......+.|+|+|++|+++.. +++|.+|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 258 SEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 533211111111 11123456899999999998765 8999999885
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2e-14 Score=132.90 Aligned_cols=204 Identities=17% Similarity=0.204 Sum_probs=138.4
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC---CeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 172 (338)
..+.+||..... .+.+..|...+.+..|+|+++.|+..+.+ ..|++||+++++........+ .....|+|+|..+
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 578888876554 45677888999999999999999888765 369999998775432222222 2357899999988
Q ss_pred EEEE-cCCeEEEE--eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEcc--CCeeEEEeeeCCC
Q 019603 173 AVAM-EAGAIKLF--DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAY--GGEKRCGFSLEPS 246 (338)
Q Consensus 173 ~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~--~~~~~~~~~~~~~ 246 (338)
+.+. .+|.+.|| |..... . ..+..+...+....|+|||+.+++++ .++...||++. ++.. ... .+
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~---~--~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l---~~ 333 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT---P--SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV---GG 333 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC---e--EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe---cC
Confidence 7664 68877766 443321 1 12233455677889999999887766 46677777653 2322 111 12
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
.. ....|+|||++|+..+.++ +.+||+.+++.......+ ...++.|+|++++++.++ +...+|.
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 11 3468999999999888765 566999888765333332 345788999999999886 3455553
No 184
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=7.3e-16 Score=128.83 Aligned_cols=212 Identities=19% Similarity=0.284 Sum_probs=151.8
Q ss_pred HHhccccceeeccCCcceeEEEeecCC-CEEEEeeCCCcEEEEEcCCCeeEeEE---eecccCeeeEEEeecCCeeEEec
Q 019603 13 TVRSMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTT---YHKKHGADCVCFTHHPSSVICST 88 (338)
Q Consensus 13 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
+..+.+....|.+|+++|+.+.|+|+. ++++|||.|.+||+||+++..++..+ .+|...|..+-|+.++..++..
T Consensus 121 d~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc- 199 (385)
T KOG1034|consen 121 DVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC- 199 (385)
T ss_pred ecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeecc-
Confidence 344555667788999999999999975 69999999999999999999987654 4455556666676666655432
Q ss_pred CccCCCCCceeEEEEccCCeE-------------------------EE---eecCCccceEEEEEcCCCCEEEEEECCCe
Q 019603 89 KYNLDSTGESLRYLSMYDNRI-------------------------LR---YFKGHKERVISLCMSPVNDSFMSGSLDHS 140 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~-------------------------~~---~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~ 140 (338)
+.+.++++|++...+. .. +-.-|++.|-|+.|- |++++|=|-++.
T Consensus 200 -----GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscena 272 (385)
T KOG1034|consen 200 -----GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENA 272 (385)
T ss_pred -----CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCce
Confidence 3348999999873210 01 123478888888776 578999999999
Q ss_pred EEEEEC-CCcceeeee-------------eecCcc----EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC
Q 019603 141 VRIWDL-RVNACQGIL-------------RLRGRP----TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 202 (338)
Q Consensus 141 I~iWd~-~~~~~~~~~-------------~~~~~~----~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 202 (338)
|..|.. +-++.+..+ ...... ..++++-+.+++.|.+.|.+.+||++........++.-.-.
T Consensus 273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~ 352 (385)
T KOG1034|consen 273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS 352 (385)
T ss_pred EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc
Confidence 999987 322221111 111111 14678888999999999999999998754322222222223
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEEc
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~ 232 (338)
...|...+|+.|+..++....|++|.-||.
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 456888999999999999999999999985
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=4e-15 Score=131.73 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=161.8
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeE---EecCccCCCCCceeEE
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVI---CSTKYNLDSTGESLRY 101 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~ 101 (338)
.|...|-++.|+.+...+.+++++.-++-||+.+............-.+.+. ..+...- -...+.+.++++.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h--~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH--LGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCcccc--ccccccCCCCCcceEEEEcCCceEEE
Confidence 5666777999988777766665555455555543321100001100000000 0000000 0000011233455555
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCCCCEE-EEEEcC
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGLVF-AVAMEA 178 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~d 178 (338)
.+ ..++..+...+|.+.|.+-.|+|+|.-|+|+|+||.||+|. |+|-...++. .....+++|.|+..-+ .+.+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-- 165 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-- 165 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--
Confidence 43 23455666789999999999999999999999999999997 3443222222 2234578899987643 3333
Q ss_pred CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 179 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
+.+.|=.+... ........|.+-|.++.|+|....|++++.|-..++||.... . .|.-..|..++++++|+|+
T Consensus 166 ~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~--Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 166 GHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-N--LFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred CeEEEeecccc----cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc-c--cccCChhccceeeeeeccc
Confidence 33433333221 122344578899999999999999999999999999997643 2 3445566678999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEE
Q 019603 259 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLS 312 (338)
Q Consensus 259 ~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~ 312 (338)
+.++.+|-+ ++| .-+...|+|..|+|||||.+++.|.++..
T Consensus 239 -~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 239 -KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred -cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCce
Confidence 555555532 233 12335689999999999999999876543
No 186
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.66 E-value=1.3e-14 Score=121.24 Aligned_cols=239 Identities=17% Similarity=0.232 Sum_probs=172.2
Q ss_pred CCcceeEEEee-------cCCCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc-----CeeeEEEeecCCeeEEecCccCC
Q 019603 26 FGGKINSLDFH-------RKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH-----GADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 26 h~~~V~~l~~s-------~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
.++.|+..+|- |+..++++.+.|.-|++||..+|++..++....+ +..+++|++++..++++.+
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk---- 178 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK---- 178 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc----
Confidence 35667777775 6778999999999999999999998766544433 4568899999998886544
Q ss_pred CCCceeEEEEc-cCCeEE--Eee-----cCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecCc--cE
Q 019603 94 STGESLRYLSM-YDNRIL--RYF-----KGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR--PT 162 (338)
Q Consensus 94 ~~~~~i~~~~~-~~~~~~--~~~-----~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~ 162 (338)
..||++++ +.|+.. ... .+..+-|.+++|+|... .++.||....+-|+.-..+.....+..++. .-
T Consensus 179 ---rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 179 ---RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH 255 (406)
T ss_pred ---ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence 78999999 444322 111 23477789999999765 899999999999987655555444444333 34
Q ss_pred EEEcCCCCEEEEEE-cCCeEEEEeCCCCCCCCCeeEEec-CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccC-CeeEE
Q 019603 163 VAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRC 239 (338)
Q Consensus 163 ~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~-~~~~~ 239 (338)
+.|.++|..+.+|. .|.+|..||+|.... ++..+... +.+..-.-....|+++.+++++.+|.|++||+.+ ++...
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 88999999888776 578999999996532 22221111 2233444567789999999999999999999876 55333
Q ss_pred EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 240 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
....+...++.++++|--+.++|++.. |++...
T Consensus 335 --v~~~~sd~vNgvslnP~mpilatssGq---r~f~~~ 367 (406)
T KOG2919|consen 335 --VTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYP 367 (406)
T ss_pred --ccccccccccceecCcccceeeeccCc---eeecCC
Confidence 233455678889999998888888764 455443
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.6e-13 Score=116.65 Aligned_cols=237 Identities=16% Similarity=0.262 Sum_probs=163.9
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
...++...|+.+...|..|+.|| .++|+.+.-... ......++..+-.-+..+.+...+. ..++.+++++...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~--~~~~~~~~~IvEmLFSSSLvaiV~~----~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC--FSKDTEGVSIVEMLFSSSLVAIVSI----KQPRKLKVVHFKK 77 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh--hcccCCCeEEEEeecccceeEEEec----CCCceEEEEEccc
Confidence 34566777998888888888887 688887643321 1111223444444444443333322 1225677777766
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec---CccEEEEcCCC--CEEEE--EEcCC
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQQG--LVFAV--AMEAG 179 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~--~~~dg 179 (338)
+..+..+. ....|.++.+.. +.|+.+=.+. |.|||++.-+.++++... .....+++++. .+++- ....|
T Consensus 78 ~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 78 KTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred CceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 65555443 456788888864 3455554444 999999988887776643 22245565543 45543 33568
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCc-EEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
.|.+||..+.+. ...+..|.+.+-+++|+|+|.++++++..|+ |+++...+|++...|+---.+..+.+++|+|+
T Consensus 154 dV~l~d~~nl~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 154 DVVLFDTINLQP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred eEEEEEccccee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 999999765332 3456689999999999999999999999987 68999999988877764444567889999999
Q ss_pred CCEEEEEcCCCcEEEEECCC
Q 019603 259 GQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 259 ~~~l~sgs~Dg~i~vWd~~~ 278 (338)
+++|++.|..++|+||.+++
T Consensus 230 s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCeEEEecCCCeEEEEEecc
Confidence 99999999999999999874
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=1.9e-14 Score=123.05 Aligned_cols=199 Identities=18% Similarity=0.266 Sum_probs=148.4
Q ss_pred EeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcce-------eeeeeecCcc--EEEEcCCC-CEEEEEEcCC
Q 019603 111 RYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC-------QGILRLRGRP--TVAFDQQG-LVFAVAMEAG 179 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~-------~~~~~~~~~~--~~~~~~~~-~~~~~~~~dg 179 (338)
..+.||+++|..++|.|.+ ..|||||.|.+|+||++..+.. ...+..|... .+.|+|.. ++|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 4567999999999999965 5799999999999999865432 2233344433 47888854 5888999999
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC-CCCeeEEECCC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPD 258 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~fs~~ 258 (338)
.|.+|+..+... ...+ .|...|..+.|+.+|.++++.+.|+.|+|||.++++.+..- ..|. ....++.|-.+
T Consensus 155 ~v~iWnv~tgea----li~l-~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 155 TVSIWNVGTGEA----LITL-DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--VAHEGAKPARAIFLAS 227 (472)
T ss_pred eEEEEeccCCce----eeec-CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--ccccCCCcceeEEecc
Confidence 999999887542 2223 48889999999999999999999999999999999887654 2333 24567889889
Q ss_pred CCEEEEE---cCCCcEEEEECCC---CCeEeEeeCCCCceEEEEEcCCCceEEeec---ceEEEeeeC
Q 019603 259 GQYVVSG---SGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN 317 (338)
Q Consensus 259 ~~~l~sg---s~Dg~i~vWd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~iw~~~ 317 (338)
|..+-|| .+++.+-+||-.+ +-....+....| |.-=-|.||..++..++ +.|+.+.+.
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 9955544 3678999998764 334455655444 44456788888777764 678888654
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6.9e-14 Score=130.54 Aligned_cols=277 Identities=13% Similarity=0.180 Sum_probs=181.3
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCe-eEEecCccCCCCCceeEE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSS-VICSTKYNLDSTGESLRY 101 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 101 (338)
+.|-.+.-..-.|++|+++++.+. +..|++|...+|.+++.+..+..++..+.+.+.+.. .++-. .+.++.|++
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~----~sl~G~I~v 86 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIV----CSLDGTIRV 86 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEE----EecCccEEE
Confidence 444444444567999999888665 678999999999999988888888877777665543 12111 134589999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCC---CCEEEE-EEC------------CCeEEEEECCCcce--eeeeeec-CccE
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPV---NDSFMS-GSL------------DHSVRIWDLRVNAC--QGILRLR-GRPT 162 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~---~~~l~S-gs~------------D~~I~iWd~~~~~~--~~~~~~~-~~~~ 162 (338)
|+..++++++++..+.. |..+.+.|. ...++. +.. -++++-+.+.+... ......+ ...+
T Consensus 87 wd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred ecCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 99999999888764432 222322221 111221 111 12222222211100 0000011 1234
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEE-ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccC--CeeEE
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG--GEKRC 239 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~--~~~~~ 239 (338)
+.+++.|....+...+ .+.+|....... ....+. .-.|...++++++||.+++++++..||.|.+|.... +....
T Consensus 166 I~~~~~ge~~~i~~~~-~~~~~~v~~~~~-~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMC-KIHIYFVPKHTK-HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred EEEcCCceEEEEEEee-eEEEEEecccce-eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 6677777766655544 566776543211 000000 113455689999999999999999999999997544 33334
Q ss_pred EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 240 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
...++-|...+++++|+++|.||+|||..|.+-+|.+.+++ .+-|..-.++|..+.++||+...+..-
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe
Confidence 44567788899999999999999999999999999999988 456677789999999999998766654
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.4e-14 Score=113.79 Aligned_cols=213 Identities=15% Similarity=0.234 Sum_probs=147.9
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR 108 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 108 (338)
.|..-+|+|.+++|+.|..+|.|-+..+.+-.. .. + .+ ....
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s-----~s-------a---~~-----------------------~gk~ 53 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS-----GS-------A---EP-----------------------PGKL 53 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc-----cc-------c---CC-----------------------CCCc
Confidence 455667899999999999999999998753210 00 0 00 0111
Q ss_pred EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 019603 109 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRS 188 (338)
Q Consensus 109 ~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 188 (338)
.+-..++|.++|+.++|. ...|+||+. |.|+=|..+..... .+.-++|....
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es-------------------------~~~K~lwe~~~ 105 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEES-------------------------LATKRLWEVKI 105 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhh-------------------------ccchhhhhhcC
Confidence 234458999999999998 467888775 99999976533210 01122343221
Q ss_pred CCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC
Q 019603 189 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D 268 (338)
|... .....-+|++|...|...-+++++.|+.++-||+++|+....|+ +|...+.++.--.....++||++|
T Consensus 106 ----P~~~--~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--GHtDYvH~vv~R~~~~qilsG~ED 177 (325)
T KOG0649|consen 106 ----PMQV--DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--GHTDYVHSVVGRNANGQILSGAED 177 (325)
T ss_pred ----cccc--CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--CCcceeeeeeecccCcceeecCCC
Confidence 1100 01123458889999988888888899999999999998877665 566667777775566778899999
Q ss_pred CcEEEEECCCCCeEeEeeC---------C-CCceEEEEEcCCCceEEeecc-eEEEeeeC
Q 019603 269 GTLHAWNINTRNEVACWNG---------N-IGVVACLKWAPRRAMFVAASS-VLSFWIPN 317 (338)
Q Consensus 269 g~i~vWd~~~~~~~~~~~~---------h-~~~v~~l~~~p~~~~l~s~s~-~~~iw~~~ 317 (338)
|++||||+++++++..+.. | ..+|-+|+-+.+ +|+.|++ .+.+|-.+
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--WlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WLVCGGGPKLSLWHLR 235 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eEEecCCCceeEEecc
Confidence 9999999999999887642 2 346777776554 7888764 68899655
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=2.6e-14 Score=126.63 Aligned_cols=186 Identities=17% Similarity=0.261 Sum_probs=133.5
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
.+....|.+.|.+-+|+|||.-|+|+|.||.||+|... |-+.-++.....++.|++|.++...++.... +.+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-------~h~ 168 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-------GHI 168 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC-------CeE
Confidence 34567899999999999999999999999999999753 4333334445567899999888777664432 333
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee-eeeeecCccEEEEcCCCCEEEEEEcC
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-GILRLRGRPTVAFDQQGLVFAVAMEA 178 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d 178 (338)
.+--+.-...+-.+++|.+-|.++.|++.++.++|||+|-.-||||-.-...- .....+...+++|+|+ ..++.++-
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~- 246 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY- 246 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-
Confidence 33333333334457899999999999999999999999999999996432221 1112233456899999 55555543
Q ss_pred CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEE
Q 019603 179 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 230 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~ 230 (338)
+++|+ .....+.|..+.|||||..++.++..|.+.+-
T Consensus 247 nt~R~---------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 247 NTARF---------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeee---------------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 23331 12345679999999999999999888877653
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.64 E-value=3.6e-15 Score=127.87 Aligned_cols=157 Identities=18% Similarity=0.306 Sum_probs=123.8
Q ss_pred ccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCe
Q 019603 117 KERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 195 (338)
Q Consensus 117 ~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 195 (338)
..+|.++.|+++.. .++||+.|..|++|-+..++... .+..|..-
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-----------------------~~~~V~y~----------- 58 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-----------------------GDMKVEYL----------- 58 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC-----------------------CceeEEEe-----------
Confidence 35789999998876 99999999999999876543210 00111110
Q ss_pred eEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc--------C------CeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 196 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY--------G------GEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 196 ~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~--------~------~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
-.+..|...|+.+.|+|+|+.+++++.++.+.+|... + ........+.+|...+..++|+|++.+
T Consensus 59 -s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 59 -SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred -ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 1134677889999999999999999888999998654 1 112222344567788999999999999
Q ss_pred EEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 262 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 262 l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
+++++.|.++++||+..|+.+..+..|...|..++|.|-++++++-+
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999865
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=2.6e-14 Score=117.70 Aligned_cols=215 Identities=17% Similarity=0.241 Sum_probs=145.1
Q ss_pred ceeEEEEccCCe---EEEeecCCccceEEEEEcCCCC-EEEEEECC-------CeEEEEECCCcce---------eeeee
Q 019603 97 ESLRYLSMYDNR---ILRYFKGHKERVISLCMSPVND-SFMSGSLD-------HSVRIWDLRVNAC---------QGILR 156 (338)
Q Consensus 97 ~~i~~~~~~~~~---~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D-------~~I~iWd~~~~~~---------~~~~~ 156 (338)
+.+.+.++.+.. ..+.|..|.+.|+.++-+|-++ .|+|+-.| ..+-||.+..... +..+.
T Consensus 40 NqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld 119 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD 119 (370)
T ss_pred ceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC
Confidence 566666665432 2355677899999999999765 56666543 4578998754321 11111
Q ss_pred ---ecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEE---ecCCCCceEEEEEcC--CCCEEEEEecCCcEE
Q 019603 157 ---LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL---VGGDTAEVCDIKFSN--DGKSMLLTTTNNNIY 228 (338)
Q Consensus 157 ---~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~i~~v~~sp--~~~~i~~~~~d~~i~ 228 (338)
.....++.|.|++..+++.. |..|.+|++...... ..... ...+....+.-+|+| ++. .+....++++.
T Consensus 120 teavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt~d~tl~ 196 (370)
T KOG1007|consen 120 TEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATTSDSTLQ 196 (370)
T ss_pred HHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCccc-eEEEeCCCcEE
Confidence 11235688999998877655 889999998754331 11111 112344566678999 344 45556689999
Q ss_pred EEEccCCeeEEEeeeCCCCCCCeeEEECCCCC-EEEEEcCCCcEEEEECCC-CCeEeEeeCCCCceEEEEEcCC-CceEE
Q 019603 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPR-RAMFV 305 (338)
Q Consensus 229 i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~v~~l~~~p~-~~~l~ 305 (338)
.||.++.++....+ ..|-..+..+.|+|+-+ +|+|++.||.||+||.+. ..++..+.+|..+||+++|+|- .+++.
T Consensus 197 ~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 99998665432221 12333577899999876 588999999999999985 4678899999999999999996 45666
Q ss_pred eecc--eEEEee
Q 019603 306 AASS--VLSFWI 315 (338)
Q Consensus 306 s~s~--~~~iw~ 315 (338)
++++ .+.+|-
T Consensus 276 s~~SDs~V~Lsc 287 (370)
T KOG1007|consen 276 SGGSDSAVNLSC 287 (370)
T ss_pred ecCCCceeEEEe
Confidence 6653 466664
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=2.2e-13 Score=112.47 Aligned_cols=287 Identities=14% Similarity=0.210 Sum_probs=185.5
Q ss_pred ccccceeeccCCcceeEEEeec--CC-CEEEEeeC----CCcEEEEEcC--CCeeEeEE-eecccCeeeEEEeecCCeeE
Q 019603 16 SMAMAAIFSDFGGKINSLDFHR--KD-DLLVTASD----DDSVRLYDIV--SAKLIKTT-YHKKHGADCVCFTHHPSSVI 85 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~--~~-~~l~s~s~----D~~i~iWd~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (338)
+.+++..|..| -.++++.|+. +. ..|+.||- .+.|.|-.+. ++..+... ..+..++..+-|.++.....
T Consensus 34 r~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 34 RRKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred ccceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 44556666543 4578889983 33 36777774 3566666553 34433221 22333455566655543222
Q ss_pred EecCccCCCCCceeEEEEccC--CeEE--E-----eecCCccceEEEEEcCC-CCEEEEEECCCeEEEEECCCcce--e-
Q 019603 86 CSTKYNLDSTGESLRYLSMYD--NRIL--R-----YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNAC--Q- 152 (338)
Q Consensus 86 ~~~~~~~~~~~~~i~~~~~~~--~~~~--~-----~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~~~--~- 152 (338)
- .-+.+++..+|+|.+.. .+.. . .-..|..++++..|..- -++|.++|.|-+..|||+.++.. +
T Consensus 113 p---dlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 113 P---DLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred c---chhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence 1 12345678999999973 3221 1 12346778999999764 46899999999999999988732 2
Q ss_pred eeeeecCcc--EEEEcCCC-CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecC-CcE
Q 019603 153 GILRLRGRP--TVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTN-NNI 227 (338)
Q Consensus 153 ~~~~~~~~~--~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d-~~i 227 (338)
..+..|..+ -++|...+ .+|++.+.||.+|+||+|...-. .-.++..........+.|++.. +++++-..| ..|
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV 268 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence 223334443 47777765 48999999999999999974321 1111111124567778888755 456655544 579
Q ss_pred EEEEccCCeeEEEeeeCCCCCCCeeEEECCCC-CEEEEEcCCCcEEEEECCCCCe------EeEeeCCCCceEEEEEcCC
Q 019603 228 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNE------VACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~------~~~~~~h~~~v~~l~~~p~ 300 (338)
.|.|++... ....++.+|...|+.++|.|.. ..|.|+|.|..+-+||+.+.-. +-.+. ..+.|+.|.|+|.
T Consensus 269 ~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 269 VILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSS 346 (364)
T ss_pred EEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeeccc
Confidence 999987543 2345677888899999999975 5788999999999999975322 11233 4678999999975
Q ss_pred -CceEEeecc
Q 019603 301 -RAMFVAASS 309 (338)
Q Consensus 301 -~~~l~s~s~ 309 (338)
..+++.+.+
T Consensus 347 ~~Dwiai~~~ 356 (364)
T KOG0290|consen 347 QPDWIAICFG 356 (364)
T ss_pred CCCEEEEEec
Confidence 457777753
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.1e-14 Score=125.53 Aligned_cols=192 Identities=12% Similarity=0.143 Sum_probs=133.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec--CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEE
Q 019603 121 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 198 (338)
Q Consensus 121 ~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 198 (338)
..++|..+|..+++|+.||++|||+..+-..+.....+ ....+.|+|||..+++-+.| ..++|+.++... +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~--~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA--LARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch--hhhcC
Confidence 56899999999999999999999996544433222222 23458999999999999998 999999876521 11111
Q ss_pred ecCCCCceEEEEEcCCC---CEEEEEec--CCcEEEEEccCCee---EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc
Q 019603 199 VGGDTAEVCDIKFSNDG---KSMLLTTT--NNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270 (338)
Q Consensus 199 ~~~~~~~i~~v~~sp~~---~~i~~~~~--d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~ 270 (338)
....+.....|.|+-++ .+.++... .+.|..++...... ....+.....+.+++++.|++|++++-|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 01223345567787765 33333332 34566655432211 111122222357899999999999999999999
Q ss_pred EEEEECCCCCeEeEe-eCCCCceEEEEEcCCCceEEeecc--eEEEee
Q 019603 271 LHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAASS--VLSFWI 315 (338)
Q Consensus 271 i~vWd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~ 315 (338)
|-|++..+-++++.. +.|.+.|+.|.|+|+.+.+++.|. ...|..
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 999999988777666 489999999999999999998763 344443
No 196
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=8.8e-13 Score=121.81 Aligned_cols=237 Identities=15% Similarity=0.154 Sum_probs=153.5
Q ss_pred CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCC
Q 019603 49 DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPV 128 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~ 128 (338)
..|.+||...... +.+......+....|++++..++..+. ......+.++++.+++... +....+.+....|+|+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~---~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTF---ESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEe---cCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCC
Confidence 3688888865433 233334445677888888877765432 1223578999998775433 2222333456899999
Q ss_pred CCEEEEE-ECCC--eEEEEECCCcceeeeeeec-CccEEEEcCCCCEEEEEEcC-CeEEEE--eCCCCCCCCCeeEEecC
Q 019603 129 NDSFMSG-SLDH--SVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEA-GAIKLF--DSRSYDKGPFDTFLVGG 201 (338)
Q Consensus 129 ~~~l~Sg-s~D~--~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d-g~i~i~--d~~~~~~~~~~~~~~~~ 201 (338)
|+.|+.. +.++ .|.+||+.+++........ ......|+|+|..++..+.+ +..++| |+.... ...+ ..
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~l--t~ 328 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRI--TW 328 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEe--ec
Confidence 9987743 4454 5888999877654332222 12347899999988766654 455666 443221 1111 12
Q ss_pred CCCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc---EEEEE
Q 019603 202 DTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT---LHAWN 275 (338)
Q Consensus 202 ~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~---i~vWd 275 (338)
.........|+|||+++++.+.++ .+++||+.+++... +... .......|+|||++|+.++.++. +++++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 223345678999999998876543 58888987776432 2211 12345789999999999887775 67777
Q ss_pred CCCCCeEeEeeCCCCceEEEEEcCC
Q 019603 276 INTRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 276 ~~~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
+ +++....+.+|.+.+...+|+|-
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCCC
Confidence 7 45666778888899999999984
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=4e-12 Score=106.31 Aligned_cols=242 Identities=12% Similarity=0.203 Sum_probs=158.1
Q ss_pred eeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc-CCCCCceeEEEEccCCe
Q 019603 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN-LDSTGESLRYLSMYDNR 108 (338)
Q Consensus 30 V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 108 (338)
..+++|+.|...++.|- |...|||+.+.-+..........+...+.+-+-...+....+.. -.=..+.+-+||-...+
T Consensus 8 ~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 34499998887777664 55699999876433222222222211111111111111111100 00112578999976666
Q ss_pred EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC-cceeeeeeecCcc--EEEEcCCC--CEEEE-EEcCCeEE
Q 019603 109 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGILRLRGRP--TVAFDQQG--LVFAV-AMEAGAIK 182 (338)
Q Consensus 109 ~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-~~~~~~~~~~~~~--~~~~~~~~--~~~~~-~~~dg~i~ 182 (338)
++.++. -..+|.++.+.++ .|+. =..+.|.||.... .+.+..+.....| ..+..|.. .+++. |-..|.++
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 666654 5678999999865 3333 2468999998763 3444444433322 34444432 22322 45679999
Q ss_pred EEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCc-EEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 183 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
|-|+...... ....+..|...|.|+..+-+|..+++++..|+ |+|||..+|+.+.+++---....+.+++|||+..+
T Consensus 163 i~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 163 IVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 9998754332 23456689999999999999999999999987 79999999999887765444567899999999999
Q ss_pred EEEEcCCCcEEEEECCC
Q 019603 262 VVSGSGDGTLHAWNINT 278 (338)
Q Consensus 262 l~sgs~Dg~i~vWd~~~ 278 (338)
|+.+|.-|+++|+.+..
T Consensus 241 LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEcCCCeEEEEEeec
Confidence 99999999999999874
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=2.4e-13 Score=130.93 Aligned_cols=256 Identities=14% Similarity=0.196 Sum_probs=165.3
Q ss_pred ccceeeccCCcceeEEEeecCC-CEEEEeeCCCcEEEEEcCCC-------eeEeEEeecccCeeeEEEeecCCeeEEecC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSA-------KLIKTTYHKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~D~~i~iWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
.++.+|..|...|..++.++.. .+++|||.||+||+||+..- +...++......+.++.+-.......++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~-- 1116 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS-- 1116 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE--
Confidence 4677888999999999988765 89999999999999998531 1222333334445555555555555544
Q ss_pred ccCCCCCceeEEEEccCC-------eEEEeecCCcc-ceE-EEEEcCC-CC-EEEEEECCCeEEEEECCCcceeeeeee-
Q 019603 90 YNLDSTGESLRYLSMYDN-------RILRYFKGHKE-RVI-SLCMSPV-ND-SFMSGSLDHSVRIWDLRVNACQGILRL- 157 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~-------~~~~~~~~H~~-~V~-~l~~~~~-~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~- 157 (338)
+.++.+++.+++-. ...+..+.+.. .|. ..+|... .. .++.+..-+.|..||++.......++.
T Consensus 1117 ----t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1117 ----TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred ----cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 34578888887642 12222233332 233 3344433 23 678888889999999987765444332
Q ss_pred --cC-ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC---CCEEEEEe--cCCcEEE
Q 019603 158 --RG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTT--TNNNIYV 229 (338)
Q Consensus 158 --~~-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---~~~i~~~~--~d~~i~i 229 (338)
+| ..+++.+|.+..+++|+..|.+-+||+|-... +.... .++...+..+..+|- ....++++ ..+.+.+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCce--eeccc-CcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 22 35688999999999999999999999985321 10000 123345666665553 34555444 4678999
Q ss_pred EEccCCeeEEEeeeC-----------------CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Q 019603 230 LDAYGGEKRCGFSLE-----------------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 282 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~ 282 (338)
|++.+|.....+... ++........+...+..+++|+.|..||.||....+..
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999988665544332 11112223455556788999999999999999876554
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.7e-13 Score=125.04 Aligned_cols=247 Identities=14% Similarity=0.286 Sum_probs=157.7
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
.|...+++.++||+++++++|-.||.|.+|.-... ..
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~--------~~----------------------------------- 239 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS--------SD----------------------------------- 239 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccc--------cc-----------------------------------
Confidence 46677889999999999999999999999953210 00
Q ss_pred cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEEEEEcCCeEE
Q 019603 105 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~i~ 182 (338)
.......+.-|.+.|++++|+++|.+|+|||+.+-+-+|.+.+++. .-++.-+.+ -+.++|++...+...+|..|.
T Consensus 240 -~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 240 -DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred -ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 0011233455999999999999999999999999999999988873 223322333 367899999999999999999
Q ss_pred EEeCCCCCC-CCCeeEE------ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee------------
Q 019603 183 LFDSRSYDK-GPFDTFL------VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL------------ 243 (338)
Q Consensus 183 i~d~~~~~~-~~~~~~~------~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~------------ 243 (338)
+....+... ..+..+. -.+...-.+.+.++|.-+-++..+..+.|.+||+.+.+.+..++.
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~ 397 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI 397 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence 986532211 0000000 000112233445555444455555556666665544333222211
Q ss_pred ------------------------------------------------------CCCCCCCeeEEEC-CCCC-EEEEEcC
Q 019603 244 ------------------------------------------------------EPSPNTNTEATFT-PDGQ-YVVSGSG 267 (338)
Q Consensus 244 ------------------------------------------------------~~~~~~~~~~~fs-~~~~-~l~sgs~ 267 (338)
.+|...+...+|. |... .++|+|.
T Consensus 398 ~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~ 477 (792)
T KOG1963|consen 398 QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV 477 (792)
T ss_pred EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEecc
Confidence 1222222222232 2222 7889999
Q ss_pred CCcEEEEECCCC----------Ce--EeEeeCCCCceEEEEEcCCCceEEeec-ceEEEeeeCC
Q 019603 268 DGTLHAWNINTR----------NE--VACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 318 (338)
Q Consensus 268 Dg~i~vWd~~~~----------~~--~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw~~~~ 318 (338)
||.++||-+..- .+ +..| |...++++.|+.||..|+.+- .+|.+|.+..
T Consensus 478 dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy--~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 478 DGDFKIWVFTDDSNIYKKSSNWTCKAIGSY--HKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred CCeEEEEEEecccccCcCccceEEeeeecc--ccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 999999988321 12 2233 678899999999999888874 6899997664
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.6e-13 Score=130.37 Aligned_cols=245 Identities=18% Similarity=0.279 Sum_probs=158.5
Q ss_pred cceeEEEeec--CCCEEEEeeCCCcEEEEEc-CCC----eeEeEEee---c---ccC-eeeEEEeecCCeeEEecCccCC
Q 019603 28 GKINSLDFHR--KDDLLVTASDDDSVRLYDI-VSA----KLIKTTYH---K---KHG-ADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 28 ~~V~~l~~s~--~~~~l~s~s~D~~i~iWd~-~~~----~~~~~~~~---~---~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
..|+.+.+-. |..++++|+.||.||||+- .++ +++..+.. . ..+ ...+.|......++++
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t------ 1183 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT------ 1183 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec------
Confidence 5688888865 3458999999999999964 332 12211110 0 000 1122222222223222
Q ss_pred CCCceeEEEEccCCeEEEeec-CCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcce---eeeeeecCcc--E--EE
Q 019603 94 STGESLRYLSMYDNRILRYFK-GHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNAC---QGILRLRGRP--T--VA 164 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~-~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~---~~~~~~~~~~--~--~~ 164 (338)
+.-..||+||...-..+..+. +-...|++++-+. .|+.|+.|-.||.|++||.|.... +...+.+... + +.
T Consensus 1184 Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 123689999998766665553 4556688776544 468999999999999999886432 3333333322 3 56
Q ss_pred EcCCCC-EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCC-ceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEee
Q 019603 165 FDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 165 ~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
+.++|. .+++|+++|.|++||+|......+......-+.+ ..+++..+++...+++|+. +.|.||++... ....++
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k 1341 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIK 1341 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccc
Confidence 777776 4999999999999999974222221222111113 4899999999888887777 99999997533 332222
Q ss_pred eC-----CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 243 LE-----PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 243 ~~-----~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
.. ..-..+.+++|+|.--+||.|+.|..|.||....+.
T Consensus 1342 ~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1342 YNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11 112457899999999999999999999999887643
No 201
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=3.4e-14 Score=128.21 Aligned_cols=202 Identities=14% Similarity=0.274 Sum_probs=136.4
Q ss_pred CcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCee-------EeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 27 GGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKL-------IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 27 ~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
+..|+.+.|+| |...|+.+++|+.|+||.+..+.+ .+.+..|...+..+.|++-...++..+ +-+-+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a-----syd~T 701 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA-----SYDST 701 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh-----hccce
Confidence 46789999999 677899999999999999976532 233445555667777765444444332 33478
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC-----ccEEEEcCCCCEEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-----RPTVAFDQQGLVFA 173 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 173 (338)
|++||+.+++....+.||++.|.+++|+|+|+.++|.+.||+|++|+.++++.. +.+..+ .-.+.|.-+|.+++
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p-v~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP-VYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-cccCCCCccCcceeEEEEecCcEEE
Confidence 999999999998999999999999999999999999999999999999877531 111111 11255666777666
Q ss_pred EEEc----CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCE-EEEEecCCcEEEEEccCC
Q 019603 174 VAME----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 174 ~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~-i~~~~~d~~i~i~~~~~~ 235 (338)
+.+- .+.+.+||.......++.+..+..-. .+.--.|.+|... ++++-.|..|.+|.+...
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred EecccccchhhhhhhhhhhccCCcceeeeecccC-ccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 5543 35677777655443444333222111 1111235666654 445556778888876543
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.2e-12 Score=121.33 Aligned_cols=212 Identities=19% Similarity=0.235 Sum_probs=140.3
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC---CeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (338)
..+.+||.... ..+.+..|...+.+..|+|+++.|+..+.+ ..|.+||+..++........+. ....|+|+|..+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 35778887544 344566678889999999999999887744 4699999988765433222222 247899999866
Q ss_pred E-EEEcCC--eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CC--cEEEEEccCCeeEEEeeeCCC
Q 019603 173 A-VAMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 173 ~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~ 246 (338)
+ +...++ .|.+||+..... ..+..+........|+|||+++++++. ++ .++++++.+++... ....+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~-----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g- 335 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQL-----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQG- 335 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCC-
Confidence 5 445555 588888765332 112223334456789999999888764 33 37777776665432 22222
Q ss_pred CCCCeeEEECCCCCEEEEEcCCC---cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc---eEEEeeeCCC
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS---VLSFWIPNPS 319 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---~~~iw~~~~~ 319 (338)
......+|||+|++|+..+.++ .|++||+.+++.. .+. +........|+||+++++..+. .-.||..+..
T Consensus 336 -~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 336 -NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred -CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2344689999999988765433 6999999877654 443 2234567899999998877652 3456665544
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=4e-13 Score=112.26 Aligned_cols=240 Identities=15% Similarity=0.187 Sum_probs=168.9
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
|.--.++|++-+|++|...++.+-..+-|-||.....++
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----------------------------------------- 44 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----------------------------------------- 44 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------
Confidence 333457899999999999999888888888886543221
Q ss_pred EccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeeee---ee-cCccEEEEcCCCCEEEEEEc
Q 019603 103 SMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGIL---RL-RGRPTVAFDQQGLVFAVAME 177 (338)
Q Consensus 103 ~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~ 177 (338)
.+...+++.|...|+++.|.|..+.|++|+.|..-.+|....+ +=..++ +. .....+.|+|+++.|++|+.
T Consensus 45 ----w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 45 ----WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG 120 (361)
T ss_pred ----ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccC
Confidence 1234567889999999999999999999999999999998443 222222 22 22356899999999999999
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC------------eeEE----Ee
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG------------EKRC----GF 241 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~------------~~~~----~~ 241 (338)
.+.|-++-.+....=-.-.+.-......|.++.|+|++-++++++.|+.+++|...-. .++. ..
T Consensus 121 ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~ 200 (361)
T KOG1523|consen 121 ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMS 200 (361)
T ss_pred ccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHH
Confidence 9999998755321100000111133556999999999999999999999999864210 0000 01
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC-eEeEeeCCCCceEEEEEcCCCceEEee
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
+.....+++..+.|+|+|..|+=.+.|.++.+=|...+. .+.......-+..++.|-.+...+++|
T Consensus 201 E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 201 EASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred hhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence 112344688999999999999999999999999987654 444444334566777776665544444
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=4.6e-12 Score=107.89 Aligned_cols=188 Identities=13% Similarity=0.236 Sum_probs=132.1
Q ss_pred CEEEEEECC--CeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEec-CCCCce
Q 019603 130 DSFMSGSLD--HSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEV 206 (338)
Q Consensus 130 ~~l~Sgs~D--~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~i 206 (338)
..+|-.+.+ +.+++.+.+++..+..+... .++++.--+-.++++.-++. |.|||++.+.. +++.... .+...+
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp-t~IL~VrmNr~RLvV~Lee~-IyIydI~~Mkl--LhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP-TSILAVRMNRKRLVVCLEES-IYIYDIKDMKL--LHTIETTPPNPKGL 132 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecC-CceEEEEEccceEEEEEccc-EEEEeccccee--ehhhhccCCCccce
Confidence 344444444 45899999877654333332 23344333444666666654 99999987542 2222222 345567
Q ss_pred EEEEEcCCCCEEEEEe--cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc-EEEEECCCCCeEe
Q 019603 207 CDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVA 283 (338)
Q Consensus 207 ~~v~~sp~~~~i~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~-i~vWd~~~~~~~~ 283 (338)
+++.+++.+.|++.-+ ..|.|++||..+-.....+ ..|.+.+-+++|+++|.+|||+|+.|+ |||+.+.+|++++
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I--~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI--NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY 210 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE--EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence 7777777777888654 3578999998766555544 467788999999999999999999997 8999999999999
Q ss_pred EeeCCC--CceEEEEEcCCCceEEeec--ceEEEeeeCCCCCCC
Q 019603 284 CWNGNI--GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 323 (338)
Q Consensus 284 ~~~~h~--~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~~~~~ 323 (338)
.|..-. -.|.+|+|+|++++|++.| +++-|++.....+.+
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~ 254 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNP 254 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCC
Confidence 997543 5678999999999999987 468888766544333
No 205
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.2e-12 Score=120.92 Aligned_cols=202 Identities=19% Similarity=0.256 Sum_probs=131.6
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC---CeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFA 173 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 173 (338)
.+.++|. ++...+.+..+...+.+..|+|+++.|+..+.+ ..|.+||+.+++........+ .....|+|+|..++
T Consensus 177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 4666665 344445556788899999999999998877653 459999998887543322222 23578999998776
Q ss_pred -EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCc--EEEEEccCCeeEEEeeeCCCCCC
Q 019603 174 -VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNN--IYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 174 -~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~--i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
+...++...||.+.... ... ..+..+........|+|||+.+++.+. ++. ++.++..++.... ....+ ..
T Consensus 256 ~~~~~~g~~~Iy~~d~~~-~~~--~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g--~~ 329 (427)
T PRK02889 256 VALSRDGNSQIYTVNADG-SGL--RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTG--SY 329 (427)
T ss_pred EEEccCCCceEEEEECCC-CCc--EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCC--CC
Confidence 45677877777543211 111 112223334556789999999887664 344 4444544444322 22222 22
Q ss_pred CeeEEECCCCCEEEEEcCCC---cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 250 NTEATFTPDGQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.....|||||++|+..+.++ .|++||+.+++.. .+..+ .......|+||+++++.++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYAT 389 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEE
Confidence 34578999999998766554 6999999887654 34322 3456789999999888876
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=6.8e-13 Score=111.35 Aligned_cols=278 Identities=14% Similarity=0.248 Sum_probs=176.7
Q ss_pred EEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEE
Q 019603 32 SLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILR 111 (338)
Q Consensus 32 ~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (338)
-+.|||+|+++++++.- .+.|=|.++-+..+.+.. -..+..+-+..+...++|+. ..+..+.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~-----yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVA-----YKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeee-----eccceEEEEEeecceeEE
Confidence 46899999999999865 677778776543221111 11233445555555566543 223689999999888888
Q ss_pred eecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeee-ecCccEEEEcCCCCEEEEEEcCC---eEEEE--
Q 019603 112 YFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILR-LRGRPTVAFDQQGLVFAVAMEAG---AIKLF-- 184 (338)
Q Consensus 112 ~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dg---~i~i~-- 184 (338)
.+..-++.+.++.|+|+|+ .+.+...|-.|.+|.+.+.++...-. .+....++|+|+|.+.+..+... ++.|+
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 8888899999999999996 56788899999999998877643222 12335578899998877765431 11111
Q ss_pred ---------eCCCCC-----CCC-----------Ce-eEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE
Q 019603 185 ---------DSRSYD-----KGP-----------FD-TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 238 (338)
Q Consensus 185 ---------d~~~~~-----~~~-----------~~-~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~ 238 (338)
++.+.+ ..| ++ ..........+-.+.|+|.++.+++|+.|+++++.+-.+-+..
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 000000 000 00 0001111234677899999999999999998887542211110
Q ss_pred EEe-----------------------------e-----------------------------eC-----CCC-CCCeeEE
Q 019603 239 CGF-----------------------------S-----------------------------LE-----PSP-NTNTEAT 254 (338)
Q Consensus 239 ~~~-----------------------------~-----------------------------~~-----~~~-~~~~~~~ 254 (338)
..| . .+ ..+ ..+--++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 000 0 00 000 1223468
Q ss_pred ECCCCCEEEEEcC--CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecce--EEEeeeC
Q 019603 255 FTPDGQYVVSGSG--DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSV--LSFWIPN 317 (338)
Q Consensus 255 fs~~~~~l~sgs~--Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~--~~iw~~~ 317 (338)
||+|..|++|-.. -..+-+||+...+....+. ....|....|+|..+-|+.+.+. +.+|.++
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 9999999988532 3469999999876655554 34679999999999988887654 5556443
No 207
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=6.5e-13 Score=118.83 Aligned_cols=262 Identities=14% Similarity=0.262 Sum_probs=175.9
Q ss_pred HHhccccceeec--cCCcceeEEEeecCCCEEEE-eeCCCcEEEEEcCCCeeEeEEeecc-cCeeeEEEeecCCe-----
Q 019603 13 TVRSMAMAAIFS--DFGGKINSLDFHRKDDLLVT-ASDDDSVRLYDIVSAKLIKTTYHKK-HGADCVCFTHHPSS----- 83 (338)
Q Consensus 13 ~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s-~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----- 83 (338)
+..+++.+..+. +|....+.+..+|||+|+++ |-.--.|++||+..-.+- .--+-. ..+.+..++.+-+.
T Consensus 35 d~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK-FERhlDae~V~feiLsDD~SK~v~L~ 113 (703)
T KOG2321|consen 35 DVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK-FERHLDAEVVDFEILSDDYSKSVFLQ 113 (703)
T ss_pred chHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee-eeecccccceeEEEeccchhhheEee
Confidence 333444443332 67788899999999998655 557788999999754321 100101 11111111111000
Q ss_pred ----e--------------------EEec----CccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEE
Q 019603 84 ----V--------------------ICST----KYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSG 135 (338)
Q Consensus 84 ----~--------------------~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sg 135 (338)
+ ++.. ...+.+++..+.-+++..|..+..|.-....++++.+.+....|++|
T Consensus 114 ~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 114 NDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG 193 (703)
T ss_pred cCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEec
Confidence 0 0000 00123456778889999999999998888999999999999999999
Q ss_pred ECCCeEEEEECCCcceeeeeeecC-------------ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC
Q 019603 136 SLDHSVRIWDLRVNACQGILRLRG-------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 202 (338)
Q Consensus 136 s~D~~I~iWd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 202 (338)
+.||.|..||.|..+....+.... ...+.|+.+|..+++|+..|.+.|||+|.... + .....+.
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l-~~kdh~~ 270 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--L-LVKDHGY 270 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--e-eecccCC
Confidence 999999999999877655554321 23478888899999999999999999997432 1 1111233
Q ss_pred CCceEEEEEcCCCCE-EEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 203 TAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~-i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
..+|..+.|.+.+.. -+++.....++|||..+|+.....+ ....+..+|+-|++.+++++-++..+..+=+....+
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc---ccCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 456788888775443 3444445678999999887654332 224588899999999999999998888776655433
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.56 E-value=2.1e-13 Score=112.49 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=149.9
Q ss_pred ccCCcceeEEEeecCCC-----EEEEeeCCCcEEEEEcCC--Cee-EeE----EeecccCeeeEEEeecC--CeeEEecC
Q 019603 24 SDFGGKINSLDFHRKDD-----LLVTASDDDSVRLYDIVS--AKL-IKT----TYHKKHGADCVCFTHHP--SSVICSTK 89 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~-----~l~s~s~D~~i~iWd~~~--~~~-~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~ 89 (338)
..|--+++.+-|.|+.+ +|+|+| ..+|+|.+.. ++. ... .....+.....+|.++. ...+..
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt-- 168 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT-- 168 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe--
Confidence 37889999999999763 566554 5699998862 321 111 11112233444554432 122211
Q ss_pred ccCCCCCceeEEEEccCCe---EEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecCc---cE
Q 019603 90 YNLDSTGESLRYLSMYDNR---ILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR---PT 162 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~---~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~---~~ 162 (338)
.+.+-+.-+||+..+. ....+-+|.+.|..++|...+. .|||.|.||.||+||+|.-+-..++..... +.
T Consensus 169 ---SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 169 ---SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred ---ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence 2334678999998863 2445678999999999998664 799999999999999997664434443322 22
Q ss_pred --EEEcCCC-CEEEE-EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCCee
Q 019603 163 --VAFDQQG-LVFAV-AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 163 --~~~~~~~-~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
++++++. +++++ +.....|.|.|+|.. +.++ ..+.+|...|+.++|.|.. ..|.+++.|-.+.+||+...-.
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P-~tpv--a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVP-CTPV--ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCC-Ccce--ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 4555543 34443 445678999999963 3333 2345789999999999975 4788888888899999853311
Q ss_pred ------EEEeeeCCCCCCCeeEEECC-CCCEEEEEcC
Q 019603 238 ------RCGFSLEPSPNTNTEATFTP-DGQYVVSGSG 267 (338)
Q Consensus 238 ------~~~~~~~~~~~~~~~~~fs~-~~~~l~sgs~ 267 (338)
+..|. ....|+.+.|+| .+.+++.+..
T Consensus 323 ~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 323 ENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cCCCCchhhhh---ccceeeeeeecccCCCEEEEEec
Confidence 11122 224678889985 4567776654
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.4e-12 Score=118.40 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=140.6
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEEC---CCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~---D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 172 (338)
..+.++|... ...+.+..|...+.+..|+|+++.|+..+. +..|.+||+.+++........+ .....|+|+|..+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 3677777644 444556778889999999999999887764 4689999998876543222222 2346899999876
Q ss_pred E-EEEcCCe--EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC---CcEEEEEccCCeeEEEeeeCCC
Q 019603 173 A-VAMEAGA--IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 173 ~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d---~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
+ +...++. |.++|+..... ..+..+........|+|||+.+++.+.. ..+++++..+++...... .
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~---~ 332 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF---G 332 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec---C
Confidence 5 4455555 55567654321 1122333445668999999999887743 258888877665433221 2
Q ss_pred CCCCeeEEECCCCCEEEEEcCC---CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc---e---EEEeeeC
Q 019603 247 PNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS---V---LSFWIPN 317 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~D---g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---~---~~iw~~~ 317 (338)
........|+|+|++|+..+.+ ..|.+||+..+. ...+.. ...+....|+||+++++..+. . ..+|.++
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 2335567899999999876543 368889986543 344432 235778999999998877542 1 4677766
Q ss_pred CCC
Q 019603 318 PSS 320 (338)
Q Consensus 318 ~~~ 320 (338)
...
T Consensus 411 l~g 413 (435)
T PRK05137 411 LTG 413 (435)
T ss_pred CCC
Confidence 543
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=6.6e-12 Score=116.39 Aligned_cols=236 Identities=14% Similarity=0.171 Sum_probs=151.2
Q ss_pred CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCC
Q 019603 49 DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPV 128 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~ 128 (338)
..|.+||...+. .+.+..+...+....|++++..++..+. ......+.+|++.+++... +..+.....+..|+|+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~---~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSF---ERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEec---CCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC
Confidence 468899986443 3344444556677788888877775542 1223579999998776533 3344455567899999
Q ss_pred CCEEE-EEECCC--eEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEc-CCeEEEE--eCCCCCCCCCeeEEecC
Q 019603 129 NDSFM-SGSLDH--SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAME-AGAIKLF--DSRSYDKGPFDTFLVGG 201 (338)
Q Consensus 129 ~~~l~-Sgs~D~--~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~ 201 (338)
++.|+ +.+.++ .|.+||+.+++......... .....|+|+|..++..+. ++...+| |+.... .......
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~- 334 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQ- 334 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEeecC-
Confidence 98764 556665 59999998876543222211 134789999997776653 4554444 543321 1122211
Q ss_pred CCCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC---CcEEEEE
Q 019603 202 DTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWN 275 (338)
Q Consensus 202 ~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D---g~i~vWd 275 (338)
........|+|+|++++..+.++ .+++|+..+++... +. . ........|+|||++|+..+.+ +.|++++
T Consensus 335 -g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt--~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 335 -GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT--P-GSLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred -CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC--C-CCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 22344578999999998876543 58999987775442 21 1 1234567899999988776543 4688888
Q ss_pred CCCCCeEeEeeCCCCceEEEEEcC
Q 019603 276 INTRNEVACWNGNIGVVACLKWAP 299 (338)
Q Consensus 276 ~~~~~~~~~~~~h~~~v~~l~~~p 299 (338)
.. +.....+..+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcccCCCCCCCCccCC
Confidence 85 445566666677788889987
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=1.8e-13 Score=121.43 Aligned_cols=165 Identities=20% Similarity=0.333 Sum_probs=117.8
Q ss_pred ccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCe
Q 019603 117 KERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 195 (338)
Q Consensus 117 ~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 195 (338)
+..|+++.|-|.++ .|+.+-.+|.+.++|.... .....+....-+++..+++...-+. ....|..
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~t~p~~~~~k~~~~f~i~t~ksk--------~~rNPv~ 284 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGATAPSYQALKDGDQFAILTSKSK--------KTRNPVA 284 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccCCCCcccccCCCCeeEEeeeecc--------ccCCccc
Confidence 47899999998754 6777889999999997211 1111223333445555544332111 0112222
Q ss_pred eEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 196 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 196 ~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
...+. ...|...+|+|||+++++.+.|+.++|||..+.+..... +.-.....+++|||||+|+++|++|--|.||.
T Consensus 285 ~w~~~--~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m--kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 285 RWHIG--EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM--KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred eeEec--cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH--HhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 22221 236888999999999999999999999997655433211 12235678999999999999999999999999
Q ss_pred CCCCCeEeEeeCCCCceEEEEEcC
Q 019603 276 INTRNEVACWNGNIGVVACLKWAP 299 (338)
Q Consensus 276 ~~~~~~~~~~~~h~~~v~~l~~~p 299 (338)
+..++.+..-.+|.++|..|+|.|
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEeccccccceeeEeecc
Confidence 999999999999999999999984
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=3.9e-13 Score=119.36 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=122.5
Q ss_pred HHHhccccceeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCc
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
+..+.|.....+. +..|+++.|-|.++ .++.+=.++.+.+||.+-- ... ...+......++.
T Consensus 206 ~~sklfne~r~i~--ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~--t~p~~~~~k~~~~------- 268 (636)
T KOG2394|consen 206 EVSKLFNEERLIN--KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGA--TAPSYQALKDGDQ------- 268 (636)
T ss_pred HHHHhhhhccccc--ccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccC--CCCcccccCCCCe-------
Confidence 3333444444443 37899999999655 5555668999999987311 000 0011111111111
Q ss_pred cCCCCCceeEEEEc-cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCC
Q 019603 91 NLDSTGESLRYLSM-YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG 169 (338)
Q Consensus 91 ~~~~~~~~i~~~~~-~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
..|..+.- .+..++..+.--.+.|...+|+||+++||+.|.||.+||||..+.+....++-
T Consensus 269 ------f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS------------ 330 (636)
T KOG2394|consen 269 ------FAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS------------ 330 (636)
T ss_pred ------eEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh------------
Confidence 11111111 11122222222344788889999999999999999999998766554322211
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
--+...||+|||||+||++++.|+.|.||.....+.++ ++++|..+
T Consensus 331 --------------------------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA--RGqGHkSW 376 (636)
T KOG2394|consen 331 --------------------------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA--RGQGHKSW 376 (636)
T ss_pred --------------------------------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE--eccccccc
Confidence 01236678888888888888888888888877666554 67777788
Q ss_pred CeeEEECC-------------------------------C----C-------------CEEEEEcCCCcEEEEECCCC
Q 019603 250 NTEATFTP-------------------------------D----G-------------QYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 250 ~~~~~fs~-------------------------------~----~-------------~~l~sgs~Dg~i~vWd~~~~ 279 (338)
|..|+|.| + + -.|.|.+.|-.+-+||+...
T Consensus 377 Vs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 377 VSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred eeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 88888772 0 1 13778899999999999764
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.7e-11 Score=112.39 Aligned_cols=236 Identities=12% Similarity=0.117 Sum_probs=150.8
Q ss_pred CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCC
Q 019603 49 DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPV 128 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~ 128 (338)
..|.+||.... ..+.+..+...+....|++++..++..+. ......+.+|++.+++.. .+..+.+.+.+..|+|+
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~---~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSY---ANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEe---cCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 46888887544 33445555567788889988887766542 123368999999887653 34556777888999999
Q ss_pred CCEEE-EEECCCe--EEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEc-CC--eEEEEeCCCCCCCCCeeEEecC
Q 019603 129 NDSFM-SGSLDHS--VRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAME-AG--AIKLFDSRSYDKGPFDTFLVGG 201 (338)
Q Consensus 129 ~~~l~-Sgs~D~~--I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~ 201 (338)
|+.|+ +.+.++. |.+||+..++........+ .....|+|+|..++..+. +| .|.++|..... ...+. .
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt--~ 331 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRIS--F 331 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEee--c
Confidence 98764 6666665 6667887776533222222 224789999998776653 33 46666754321 11111 1
Q ss_pred CCCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC------CcEE
Q 019603 202 DTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD------GTLH 272 (338)
Q Consensus 202 ~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D------g~i~ 272 (338)
....+....|+|+|++++..+.++ .+.+++..++.. ..+.. ...+....|+|||++|+..+.+ ..++
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 233455678999999998877543 578888755433 22221 1235678999999988765432 2588
Q ss_pred EEECCCCCeEeEeeCCCCceEEEEEcCC
Q 019603 273 AWNINTRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 273 vWd~~~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
+.++..++. ..+. ..+.+...+|+|-
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCCC
Confidence 888866544 4454 3455777888874
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=9.7e-12 Score=114.90 Aligned_cols=200 Identities=17% Similarity=0.210 Sum_probs=132.9
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEE---CCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGS---LDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFA 173 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs---~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 173 (338)
.+.++|....+.. .+..+...+.+..|+|+|+.|+..+ .+..|.+||+..++........+ .....|+|+|..++
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 5777777655443 3445677899999999999887654 34579999998876543322222 23478999999777
Q ss_pred EE-EcCC--eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeEEEeeeCCCC
Q 019603 174 VA-MEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 174 ~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
.. ..++ .|.+||+..... .. +......+....|+|||+.+++++.++ .+++++..+++... +....
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~----~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~-- 330 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQI----RQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEG-- 330 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCE----EE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCC--
Confidence 54 4444 477888765321 11 222234567789999999998877643 45666766664432 22222
Q ss_pred CCCeeEEECCCCCEEEEEcCC---CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 248 NTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~D---g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.......|+|||++|+..+.+ ..|++||+.+++.. .+... .......|+||+++++.++
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEE
Confidence 234568899999998876543 35899999887643 44322 2345689999999988876
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=4.3e-12 Score=107.83 Aligned_cols=242 Identities=19% Similarity=0.287 Sum_probs=153.2
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEee-cccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYH-KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
-.+..++|++.--.++++..|.+|++||-.. ++...+.. ....+.+++|.+.....+.... -..|-+|....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC------r~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC------RAGICIWSDSR 171 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee------cceeEEEEcCc
Confidence 3467899999666789999999999999765 33333322 2357888998876655443221 13466666532
Q ss_pred C----e--------E--EEeecCCccceEEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeeeee--ecCccEEEEcCCC
Q 019603 107 N----R--------I--LRYFKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQG 169 (338)
Q Consensus 107 ~----~--------~--~~~~~~H~~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~ 169 (338)
. . + +-...|| ..|+++.|.+|+..++++| .|..|+|||+.++.++.... ..+...+.|+|+|
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC
Confidence 1 1 1 1123456 7899999999999999888 46789999999988765553 2334568999999
Q ss_pred CEEEEEEcCCeEEEEeCC-CCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSR-SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
..+.++.-|+..++|... +..+.+. .+ + .+.|..-.|+|+|+.++.+... .-+++
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw--~l--g-sgrvqtacWspcGsfLLf~~sg-sp~ly------------------ 306 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERW--IL--G-SGRVQTACWSPCGSFLLFACSG-SPRLY------------------ 306 (445)
T ss_pred CEEEEecccceeeeehhcccceecce--ec--c-CCceeeeeecCCCCEEEEEEcC-CceEE------------------
Confidence 999999999999999533 2222111 11 1 3367888899999987766542 12222
Q ss_pred CCeeEEECCCCCEEE-EEcCCCcEEEEECCCCCeEeEeeC---CCCceEEEEEcCCCceEEee
Q 019603 249 TNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNEVACWNG---NIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~-sgs~Dg~i~vWd~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~s~ 307 (338)
++.|+.....+. .++.-...-+=|+.. +....+ -.+.+.+++|.|.|.+||+.
T Consensus 307 ---sl~f~~~~~~~~~~~~~k~~lliaDL~e---~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 307 ---SLTFDGEDSVFLRPQSIKRVLLIADLQE---VTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred ---EEeecCCCccccCcccceeeeeeccchh---hhhhcCcccccCccceeeECCCCCEEEEE
Confidence 222222111111 223323333444432 111111 24778899999999999885
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2e-11 Score=112.93 Aligned_cols=238 Identities=15% Similarity=0.194 Sum_probs=149.1
Q ss_pred CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCC
Q 019603 49 DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPV 128 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~ 128 (338)
..|.+||.. +...+.+..+...+...+|++++..++..+. ......+.+|++.+++... +....+.+....|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~---~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSF---ESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEc---cCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 456666764 3333333344456677788888877765542 1223569999998886543 3334455668899999
Q ss_pred CCEEE-EEECCCeEEEEEC--CCcceeeeeeec-C-ccEEEEcCCCCEEEEEEc-CCeEEEEeCCCCCCCCCeeEEecCC
Q 019603 129 NDSFM-SGSLDHSVRIWDL--RVNACQGILRLR-G-RPTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGD 202 (338)
Q Consensus 129 ~~~l~-Sgs~D~~I~iWd~--~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~ 202 (338)
++.|+ +.+.|+...||.+ ..+... .+..+ + .....|+|+|..++..+. ++...+|.+.... .........+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~-g~~~~lt~~g- 327 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG-GAAQRVTFTG- 327 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-CceEEEecCC-
Confidence 98776 6788888777754 433322 22211 1 224679999997775554 4667777653211 1111111111
Q ss_pred CCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC---cEEEEEC
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG---TLHAWNI 276 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg---~i~vWd~ 276 (338)
.......|+|+|++++..+.++ .+++|+..+++.... . .. .......|+|||++|+..+.++ .+++-++
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t--~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-T--DT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-c--CC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 2233568999999999877654 589999887764322 1 11 2345689999999988776544 3555566
Q ss_pred CCCCeEeEeeCCCCceEEEEEcCC
Q 019603 277 NTRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 277 ~~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
+++....+..+.+.+...+|+|-
T Consensus 403 -~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 -DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCceEEeecCCCCCCCCccCCC
Confidence 45666667777788888999885
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=6.5e-12 Score=103.03 Aligned_cols=110 Identities=16% Similarity=0.458 Sum_probs=84.3
Q ss_pred CCceEEEEEcCCCCEEEEEe--cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC---CCcEEEEECC
Q 019603 203 TAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNIN 277 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~---Dg~i~vWd~~ 277 (338)
...|.++.|+|+|+.++++. .+..+.+||.. ++.+..+ . ...+..+.|||+|++|++++- .|.|.+||.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--G--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--c--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 34699999999999876654 46789999985 4443332 2 245678999999999999874 4679999999
Q ss_pred CCCeEeEeeCCCCceEEEEEcCCCceEEeecc--------eEEEeeeCCC
Q 019603 278 TRNEVACWNGNIGVVACLKWAPRRAMFVAASS--------VLSFWIPNPS 319 (338)
Q Consensus 278 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--------~~~iw~~~~~ 319 (338)
+.+.+..+.. ..+..++|+|+|+++++++. .++||.....
T Consensus 134 ~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 134 KKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 8888877653 35789999999999999863 3678876543
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.48 E-value=3.7e-12 Score=103.92 Aligned_cols=248 Identities=13% Similarity=0.098 Sum_probs=147.7
Q ss_pred eec-cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCC--ee---EEecCccCCCC
Q 019603 22 IFS-DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS--SV---ICSTKYNLDST 95 (338)
Q Consensus 22 ~~~-~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~ 95 (338)
.+. -|+..|+.+.--|+ +.|.+=+.|..+.+|++..+..+..-....+...++.|+..+. .. +.... .+.
T Consensus 50 ~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~---rgs 125 (323)
T KOG0322|consen 50 LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPS---RGS 125 (323)
T ss_pred hhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCC---ccc
Confidence 344 35677888888886 6788999999999999987654321111111222333332221 11 11000 000
Q ss_pred CceeEEEEccCCeEEEee----cCCccceEEEEEcCC-CC--EEEEEECCCeEEEEECCCcceeeeee----------ec
Q 019603 96 GESLRYLSMYDNRILRYF----KGHKERVISLCMSPV-ND--SFMSGSLDHSVRIWDLRVNACQGILR----------LR 158 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~----~~H~~~V~~l~~~~~-~~--~l~Sgs~D~~I~iWd~~~~~~~~~~~----------~~ 158 (338)
+. .++-|......++.. .+-.+.|.+..+.-. +. .++.|-++|.+-+||+..+..+-.++ .+
T Consensus 126 de-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash 204 (323)
T KOG0322|consen 126 DE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH 204 (323)
T ss_pred ch-hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc
Confidence 01 122222111111111 235577888775433 33 35688899999999998873221111 11
Q ss_pred CccE--EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe
Q 019603 159 GRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 236 (338)
Q Consensus 159 ~~~~--~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~ 236 (338)
..+. +.+.+.-..=++|+.+..+..|.+..............-.+-.+..+..-||++.+++++-|++|++|+-++.+
T Consensus 205 ~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 205 KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 1222 33333323334566677777776543211101111112234457788899999999999999999999988887
Q ss_pred eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 237 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
....+ ..|...+++++|+|+...+|.+|.|+.|-+|++
T Consensus 285 pLAVL--kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVL--KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhhh--hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 66544 455678999999999999999999999999986
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.46 E-value=9e-12 Score=120.31 Aligned_cols=211 Identities=20% Similarity=0.305 Sum_probs=146.1
Q ss_pred CeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcce-------eeeeeecCc--cEEEEcCCCCEEEEEE
Q 019603 107 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC-------QGILRLRGR--PTVAFDQQGLVFAVAM 176 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~ 176 (338)
|..+..+..|...|..++.++.. .+|+|||.||+||+||++.-.. ..+....+. ..+.+.+.+..+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 55777888999999999887665 8999999999999999864221 112221222 3466778999999999
Q ss_pred cCCeEEEEeCCCCCCCCCe---eEEec-CCCCceEEE-EEcC-CCC-EEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 177 EAGAIKLFDSRSYDKGPFD---TFLVG-GDTAEVCDI-KFSN-DGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~---~~~~~-~~~~~i~~v-~~sp-~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
+||.|++.++..+...... ..... ...+.+..| .|.. .+. .++.+...+.|..||.+..+.....+.....+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 9999999987653211110 01111 112233333 2322 223 577777888999999877665555555555678
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee-CCCCceEEEEEcCC---CceEEeecc----eEEEeeeC
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPR---RAMFVAASS----VLSFWIPN 317 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~v~~l~~~p~---~~~l~s~s~----~~~iw~~~ 317 (338)
+++++.+|.+.+++.|..-|.+-+||++=+.++..+. ++...|..+..+|- ....++++. .+.+|.+.
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 9999999999999999999999999999888887775 44577777777764 345555543 36777644
No 220
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.45 E-value=1.2e-11 Score=114.87 Aligned_cols=218 Identities=17% Similarity=0.268 Sum_probs=149.3
Q ss_pred eeEEEEccCC-eEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCccee--eeee----ecCccE--EEEc-
Q 019603 98 SLRYLSMYDN-RILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQ--GILR----LRGRPT--VAFD- 166 (338)
Q Consensus 98 ~i~~~~~~~~-~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~--~~~~----~~~~~~--~~~~- 166 (338)
.+.+|++.+. .+...+ .-...|+++.|+|.. ..++.|..+|.|-+||++.+... ..+. .+..++ +.|.
T Consensus 223 ~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 6888998765 333333 356789999999975 46888899999999999876542 1111 122233 3343
Q ss_pred -CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEec---------CCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCC
Q 019603 167 -QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---------GDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 167 -~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~ 235 (338)
+.+.-+++++.||.|..|+++.... |.+..+.. .....++.+.|.|.. ..+++|+.+|.|+--+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred cCCCCceEEEecCCcEeeeecccccc-chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3335688899999999999876433 11111111 123468889999864 46778888888887543322
Q ss_pred eeEE--Ee----eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC-CCCeEeEeeCCCCceEEEEEcCCCc-eEEee
Q 019603 236 EKRC--GF----SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACLKWAPRRA-MFVAA 307 (338)
Q Consensus 236 ~~~~--~~----~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~ 307 (338)
+... .+ ....|.+.+..+.++|=+..++..+.|-+|+||... .-.++..+..+...|++++|||-.. .|+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 2211 11 223456788999999988776666669999999998 6677888888889999999999887 45555
Q ss_pred c--ceEEEeeeC
Q 019603 308 S--SVLSFWIPN 317 (338)
Q Consensus 308 s--~~~~iw~~~ 317 (338)
+ +.+-+|...
T Consensus 461 d~~G~l~iWDLl 472 (555)
T KOG1587|consen 461 DGDGNLDIWDLL 472 (555)
T ss_pred cCCCceehhhhh
Confidence 4 678899755
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.45 E-value=8.6e-12 Score=104.43 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=148.8
Q ss_pred CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc---eeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCC-
Q 019603 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSY- 189 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~- 189 (338)
-..+|+|-+|+++...+|.+-..+.|.||...... ...++..+.. ..+.|.|....+++++.|+...+|.....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 35789999999999999999999999999876554 3445554443 34889999999999999999999987432
Q ss_pred CCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE--EEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 190 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
.-.+. ..+-.++...+++.|+|....+++++..+.|.|+-.+..+.- ......+....|++++|+|++-+|+.||.
T Consensus 89 ~Wkpt--lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 89 TWKPT--LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred eeccc--eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 22222 223346788999999999999999999999988866543322 22233455678999999999999999999
Q ss_pred CCcEEEEEC-----CCCC-------------eEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 268 DGTLHAWNI-----NTRN-------------EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 268 Dg~i~vWd~-----~~~~-------------~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
|+.+||+.. ++.. +...+....++|..+.|+|.|..|+-.+ +.+.+=.
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 999999963 2211 1222335568999999999999999876 5565544
No 222
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=8.9e-11 Score=108.54 Aligned_cols=190 Identities=17% Similarity=0.201 Sum_probs=113.6
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEE-EEECCC--eEEEEECCCcceeeeeeecCc-cEEEEcCCCCEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDH--SVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~-Sgs~D~--~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (338)
..+++|++.+++... +..+...+.+..|+|+++.|+ +.+.++ .|.+||+.+++.......... ....|+|+|..+
T Consensus 214 ~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l 292 (417)
T TIGR02800 214 PEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSI 292 (417)
T ss_pred cEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEE
Confidence 345566655543322 223445566688999998665 555544 588889887654332222221 235789999877
Q ss_pred EEEEc-CC--eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeEEEeeeCCC
Q 019603 173 AVAME-AG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 173 ~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~ 246 (338)
+..+. .+ .|.++|+.... ... +..+........|+|++++++.++.++ .|++++..++.... +..
T Consensus 293 ~~~s~~~g~~~iy~~d~~~~~---~~~--l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~--- 363 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDADGGE---VRR--LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD--- 363 (417)
T ss_pred EEEECCCCCceEEEEECCCCC---EEE--eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC---
Confidence 66554 33 45566654322 111 112234456778999999999888776 78888887654322 111
Q ss_pred CCCCeeEEECCCCCEEEEEcCCC---cEEEEECCCCCeEeEeeCCCCceEEEEE
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKW 297 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~h~~~v~~l~~ 297 (338)
........|+|+|++|+..+.++ .+++.+. +++....+..+.+.+..+.|
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 11234568999999988876654 3555554 34555556555556655555
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=6.2e-11 Score=97.25 Aligned_cols=116 Identities=20% Similarity=0.343 Sum_probs=84.8
Q ss_pred CccceEEEEEcCCCCEEE--EEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEc---CCeEEEEeCCCCC
Q 019603 116 HKERVISLCMSPVNDSFM--SGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAME---AGAIKLFDSRSYD 190 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~--Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~i~d~~~~~ 190 (338)
..+.|.+++|+|+++.|+ +|..++.|.+||++ .+.+..+.......+.|+|+|.++++++. .|.+.+||.+...
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 345699999999998754 45678899999996 44444454444567999999999988764 4679999987432
Q ss_pred CCCCeeEEecCCCCceEEEEEcCCCCEEEEEec------CCcEEEEEccCCeeEE
Q 019603 191 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRC 239 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~------d~~i~i~~~~~~~~~~ 239 (338)
. ....+...++.+.|+|+|+++++++. |+.++||+.. |+.+.
T Consensus 137 ~------i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 137 K------ISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred E------eeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 1 11123345789999999999998875 6788999864 54443
No 224
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=1.7e-10 Score=106.68 Aligned_cols=201 Identities=21% Similarity=0.324 Sum_probs=132.6
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC---CeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 172 (338)
..+.++|....+ .+.+..+...+.+..|+|++++|+.++.+ ..|++||+.+++........+ .....|+|+|..+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 356677764333 44455677789999999999998877654 489999998876533322222 2347899999866
Q ss_pred EE-EEcCC--eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-C--cEEEEEccCCeeEEEeeeCCC
Q 019603 173 AV-AMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 173 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~ 246 (338)
+. ...++ .|.+||+..... .. +..+........|+|+++.+++++.. + .|++++..+++... +. .+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~---~~--l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~--~~ 320 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQL---TR--LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT--FR 320 (417)
T ss_pred EEEECCCCCccEEEEECCCCCE---EE--CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee--cC
Confidence 54 44444 577778764321 11 11222334456899999998877653 2 58888877665432 22 22
Q ss_pred CCCCeeEEECCCCCEEEEEcCCC---cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
........|+|+|++|+.++.++ .|.+||+.++.. ..+... .......|+|++++|+..+
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYAT 383 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEE
Confidence 23456789999999999888776 799999987544 333322 2345678999999888875
No 225
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.8e-12 Score=109.15 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=139.6
Q ss_pred EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECC------CcceeeeeeecC---ccEEEEcCCCCEEEEEEcCC
Q 019603 109 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR------VNACQGILRLRG---RPTVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 109 ~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~dg 179 (338)
+.+.+.+|.+.|.++.|+.++++|+|||.|..+++|++. +.+.+.....+. ..++.|+.....+.+|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 345578999999999999999999999999999999974 223333333222 23467888888999999999
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe-eEEEeeeCCCCCCCeeEEECCC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
++-+-|+.+... +..+.-....+.|..+..+|-...+++++.++.|.+||.+... ....+...........+-|+|-
T Consensus 128 ~VI~HDiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeeccccee--eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999876432 2222212234579999999999999999999999999976543 3333333334456677889997
Q ss_pred C-CEEEEEcCCCcEEEEECCCCCe-EeEe---eCC---CCceEEEEEcCCCceEEee
Q 019603 259 G-QYVVSGSGDGTLHAWNINTRNE-VACW---NGN---IGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 259 ~-~~l~sgs~Dg~i~vWd~~~~~~-~~~~---~~h---~~~v~~l~~~p~~~~l~s~ 307 (338)
. .+|++.++-+-+-+||++.+.. +..+ ++- ...-.++.|+|.|.+|.+-
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 6 4677888999999999986432 2221 111 1122468888888877764
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=2.3e-10 Score=95.89 Aligned_cols=178 Identities=12% Similarity=0.225 Sum_probs=120.5
Q ss_pred CeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCE
Q 019603 139 HSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 217 (338)
Q Consensus 139 ~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 217 (338)
..|.|||=-.+.++..+.+.+. ..+.+.++ .+++. ..++|.+|....... .+..+.........++++-.-+..+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCCCceE
Confidence 5799999555566666665442 33555554 44433 346889997653111 1111222222334554443333344
Q ss_pred EEEEe-cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc-EEEEECCCCCeEeEeeC--CCCceE
Q 019603 218 MLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWNG--NIGVVA 293 (338)
Q Consensus 218 i~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~-i~vWd~~~~~~~~~~~~--h~~~v~ 293 (338)
++.-| .-|.|.|.|+...+...+.....|...+.+++.+-+|..+||+|..|+ |||||..++.++..+.. ....|.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 44433 357899999875554344566778889999999999999999999998 89999999999998863 236799
Q ss_pred EEEEcCCCceEEeec--ceEEEeeeCCCC
Q 019603 294 CLKWAPRRAMFVAAS--SVLSFWIPNPSS 320 (338)
Q Consensus 294 ~l~~~p~~~~l~s~s--~~~~iw~~~~~~ 320 (338)
|++|||+..+||++| +++-|+..-...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 999999999999998 577777655443
No 227
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=8.7e-12 Score=105.35 Aligned_cols=253 Identities=15% Similarity=0.259 Sum_probs=166.8
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEc-CCCeeEeEEeec-ccCeeeEEEeecCCeeEEecCccC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDI-VSAKLIKTTYHK-KHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
.++.+.+.++||.+.|+....-|...-+++.+.|.++|+|-- ..++.-..+++. ..++.++.+...-..++++-. +
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~-n- 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD-N- 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe-c-
Confidence 566778889999999999999999999999999999999943 344433333322 234455555443333333211 1
Q ss_pred CCCCceeEEEEc----cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc-EEEEcC
Q 019603 93 DSTGESLRYLSM----YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQ 167 (338)
Q Consensus 93 ~~~~~~i~~~~~----~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~~~ 167 (338)
+++.-+.+ +.....+.+..|..+|..+.|+..-++++|.+.|+.+.--=.+.+....-..+.... ...++-
T Consensus 90 ----gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~ 165 (404)
T KOG1409|consen 90 ----GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA 165 (404)
T ss_pred ----ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee
Confidence 23333332 223456677899999999999998999999999998543323333322211111100 000111
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
.+...|...|.+....+......++ ....+|...+.++.|.|....+.++..|..+.+||+- +..-..+++.+|.
T Consensus 166 --~~~fvGd~~gqvt~lr~~~~~~~~i--~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~el~gh~ 240 (404)
T KOG1409|consen 166 --LYAFVGDHSGQITMLKLEQNGCQLI--TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAYELQGHN 240 (404)
T ss_pred --EEEEecccccceEEEEEeecCCceE--EEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceeeeeccch
Confidence 1333444455555544332222222 3346889999999999999999999999999999975 3344557777888
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
..+..+..-+--+.|+++++||.|.+||++.
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 7888887777789999999999999999974
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=9.6e-11 Score=99.16 Aligned_cols=247 Identities=16% Similarity=0.308 Sum_probs=154.1
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCee----EeE-Eeecc------------cCeeeEEEeecCCeeEEec
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKL----IKT-TYHKK------------HGADCVCFTHHPSSVICST 88 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~----~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~ 88 (338)
-...|.++.|...|.+|+||..+|.|.++.-+.... ..+ ...|. ..+..+.|........
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~--- 100 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE--- 100 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE---
Confidence 356789999999999999999999999996543221 111 10110 0112222222111100
Q ss_pred CccCCCCCceeEEEEccCCe-----------------------------------EEEee-cCCccceEEEEEcCCCCEE
Q 019603 89 KYNLDSTGESLRYLSMYDNR-----------------------------------ILRYF-KGHKERVISLCMSPVNDSF 132 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~-----------------------------------~~~~~-~~H~~~V~~l~~~~~~~~l 132 (338)
+-+...+.++++|.+.... +.+.+ .+|+--|.++++..|...+
T Consensus 101 -FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 101 -FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred -EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 1123456899999885421 11222 4688889999999999888
Q ss_pred EEEECCCeEEEEECCC-cceeeeeeecCc---------cEEEEcCCC-CEEEEEEcCCeEEEEeCCCCCC-----C----
Q 019603 133 MSGSLDHSVRIWDLRV-NACQGILRLRGR---------PTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDK-----G---- 192 (338)
Q Consensus 133 ~Sgs~D~~I~iWd~~~-~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~-----~---- 192 (338)
+|+ .|-.|.+|++.. .++-.+...... ....|+|.. .+++-.+..|.|++.|+|.... .
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 875 578899999863 233222222211 124577754 5777788899999999984211 0
Q ss_pred ---CCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc-CCeeEEEeeeCCCC----------C---CCeeEEE
Q 019603 193 ---PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSP----------N---TNTEATF 255 (338)
Q Consensus 193 ---~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~----------~---~~~~~~f 255 (338)
|...-....-...|..+.|+++|+|+++-. --+|.+||+. .......++.+... . .-..++|
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 000000111234688999999999988643 3689999984 33444445443211 1 1246789
Q ss_pred CCCCCEEEEEcCCCcEEEEECCC
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
+.++.+++|||-....++++...
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cCCcceEecccccceEEEecCCC
Confidence 99999999999999999999543
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=7.5e-11 Score=101.26 Aligned_cols=263 Identities=15% Similarity=0.171 Sum_probs=167.9
Q ss_pred CCcceeEEEeecCCC--EEEEeeCCCcEEEEEcCCCeeEeEE----eecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 26 FGGKINSLDFHRKDD--LLVTASDDDSVRLYDIVSAKLIKTT----YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 26 h~~~V~~l~~s~~~~--~l~s~s~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
-...|+++.|.-+++ .++-++.|..+.....+...+.... ..+...............++.+ .+.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc------~~sG~l 127 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITC------VSSGNL 127 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEE------ecCCcE
Confidence 346678888876654 5666667888888877765543322 0010111111111111222211 223677
Q ss_pred EEEEccCCe----EEEeecCCccceEEEEEcCCCC-EEEEEECC--CeEEEEECCCcceeeeeeecCc---------cE-
Q 019603 100 RYLSMYDNR----ILRYFKGHKERVISLCMSPVND-SFMSGSLD--HSVRIWDLRVNACQGILRLRGR---------PT- 162 (338)
Q Consensus 100 ~~~~~~~~~----~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D--~~I~iWd~~~~~~~~~~~~~~~---------~~- 162 (338)
++|....+. ....+..| ..+..+.-++..+ ++++||.. ..++|||+...+. ++..... ++
T Consensus 128 ~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q--iw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 128 QVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ--IWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred EEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee--eeeccCCCCccccceeeee
Confidence 888776432 12222323 3344454455444 56679998 8999999986643 3332111 11
Q ss_pred ---EEEcCC--CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee
Q 019603 163 ---VAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 163 ---~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
+.|-+. ...|++++.-+.+|+||.+. +..|+..+-. ....++++..-|+++.++++..-+.+..||.+.+..
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-qRRPV~~fd~--~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRH-QRRPVAQFDF--LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcc-cCcceeEecc--ccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 345555 67899999999999999985 4456655543 356799999999999999999999999999987754
Q ss_pred EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc
Q 019603 238 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 238 ~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
.- ..+.+..+.+.++..+|..++|+++|-|+.|||+|+.+.+++...-- ...+++|-+.++-+
T Consensus 282 ~g-~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~n 344 (412)
T KOG3881|consen 282 LG-CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDVN 344 (412)
T ss_pred ec-cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCcc
Confidence 32 22345567889999999999999999999999999999766543211 23466777766543
No 230
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=5.3e-13 Score=124.00 Aligned_cols=231 Identities=22% Similarity=0.294 Sum_probs=166.4
Q ss_pred EeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEE
Q 019603 65 TYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 144 (338)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iW 144 (338)
+.+|..+|.|..|...+-+++.+ +.+.-+++|..+++.+...+.||.+.|+.++.+.++-+++++|.|+.|++|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitg------sdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITG------SDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHhhhhheeeeeeccccceEeec------CccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34566678887776666566543 345789999999999999999999999999999988899999999999999
Q ss_pred ECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCCC----CCCCeeEEecCCCCceEEEEEcCCCCEE
Q 019603 145 DLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYD----KGPFDTFLVGGDTAEVCDIKFSNDGKSM 218 (338)
Q Consensus 145 d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~i~~v~~sp~~~~i 218 (338)
-+..+..+.++..+.. ..++|+|-. +.+.||++++||.|-.. ..|.. + .....+..+.|...+..+
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~-~---~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK-F---TEKDLVDSILFENNGDRF 331 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC-c---ccccceeeeecccccccc
Confidence 9999988887776654 346777743 56789999999987211 11110 0 122446667777778888
Q ss_pred EEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC-CCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEE
Q 019603 219 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW 297 (338)
Q Consensus 219 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~-~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~ 297 (338)
++++.++....|....- ..+.....-+.++.+ ..+.+++=.+-.+.+|++.++..+..+.+|...+..|.+
T Consensus 332 ~Tgs~d~ea~n~e~~~l--------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQL--------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred ccccCCcccccchhhHh--------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeee
Confidence 89998888777754211 111111111222222 246677777888999999999999999999999999999
Q ss_pred cCCCceEE-eec--ceEEEeeeC
Q 019603 298 APRRAMFV-AAS--SVLSFWIPN 317 (338)
Q Consensus 298 ~p~~~~l~-s~s--~~~~iw~~~ 317 (338)
||-+..++ +++ +...||.+-
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecc
Confidence 99876554 444 456677543
No 231
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4e-10 Score=104.58 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCEEE-EEECCC--eEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEc-CCe--EEEEeCCCCCCC
Q 019603 120 VISLCMSPVNDSFM-SGSLDH--SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAME-AGA--IKLFDSRSYDKG 192 (338)
Q Consensus 120 V~~l~~~~~~~~l~-Sgs~D~--~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-dg~--i~i~d~~~~~~~ 192 (338)
+....|+|+++.|+ +.+.++ .|.+||+.+++......... .....|+|+|..++..+. ++. |.++|+....
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-- 322 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-- 322 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--
Confidence 34578999998776 555555 68888998776433222111 223679999987765543 344 5555654322
Q ss_pred CCeeEEecCCCCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC-
Q 019603 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD- 268 (338)
Q Consensus 193 ~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D- 268 (338)
.......+ .......|+|+|++++..+..+ .++++|+.+++... +... .......|+|||++++-.+.+
T Consensus 323 -~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~---~~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 323 -AERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT---SLDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred -EEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC---CCCCCceECCCCCEEEEEEecC
Confidence 11111111 2233467999999998877543 47888987775432 2211 122356899999998766543
Q ss_pred --CcEEEEECCCCCeEeEeeCCCCceEEEEEcCC
Q 019603 269 --GTLHAWNINTRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 269 --g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
..|++++.. +.....+..+.+.+...+|+|-
T Consensus 396 g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 396 GRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 347777775 4444566666677888888874
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4.4e-10 Score=104.30 Aligned_cols=210 Identities=18% Similarity=0.217 Sum_probs=134.3
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC---CeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFA 173 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 173 (338)
.+.++|...++ .+.+..+...+....|+|+++.|+..+.+ ..|.+||+.+++........+. ....|+|+|..++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 35566665444 34455677889999999999998876644 3689999988765433322222 2478999998776
Q ss_pred E-EEcCC--eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-C--cEEEEEccCCeeEEEeeeCCCC
Q 019603 174 V-AMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 174 ~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
. ...++ .|.++|+..... ..+..+........|+|||+.++..+.. + .+++++..+++... +...+
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~-- 330 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVG-- 330 (430)
T ss_pred EEEccCCCceEEEEECCCCCe-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCC--
Confidence 4 44454 567778765321 1122233345567899999988877643 2 57778877765432 22222
Q ss_pred CCCeeEEECCCCCEEEEEcCC-C--cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec---ceEEEeeeCC
Q 019603 248 NTNTEATFTPDGQYVVSGSGD-G--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 318 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~D-g--~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~iw~~~~ 318 (338)
.......|+|+|++|+..+.+ + .|.+||+.+++.. .+.. ........|+|++++++.++ +...|+..+.
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 123457899999998876543 3 5889999887643 3332 22334578999999888775 2344555544
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=2.4e-10 Score=102.99 Aligned_cols=286 Identities=14% Similarity=0.155 Sum_probs=164.1
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
.+.+..+......-..+.|+|||+++++++.|+.|.++|+.+++.++++... .....++++.++..++.+.. ..
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~-----~~ 99 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANY-----EP 99 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEE-----ET
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEec-----CC
Confidence 4455566554444455789999999999999999999999999988776543 34566788888877765532 13
Q ss_pred ceeEEEEccCCeEEEeecCC-------ccceEEEEEcCCCCEEEEEECC-CeEEEEECCCcceee--eeeecC-ccEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGH-------KERVISLCMSPVNDSFMSGSLD-HSVRIWDLRVNACQG--ILRLRG-RPTVAF 165 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H-------~~~V~~l~~~~~~~~l~Sgs~D-~~I~iWd~~~~~~~~--~~~~~~-~~~~~~ 165 (338)
+.+.++|..+.+.++.+... ..++.++..+|..+.++..-.| +.|.+-|....+... .+.... ..-..|
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~ 179 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF 179 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc
Confidence 78999999999988876532 3478888888888855555444 777777876554322 222211 123688
Q ss_pred cCCCCEEEE-EEcCCeEEEEeCCCCCCCCCeeEEecC---CCCceEEEEEcCC----------CCEEEEEecCCcEEEEE
Q 019603 166 DQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFLVGG---DTAEVCDIKFSND----------GKSMLLTTTNNNIYVLD 231 (338)
Q Consensus 166 ~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~v~~sp~----------~~~i~~~~~d~~i~i~~ 231 (338)
+|++.++++ ...++.+-++|.+... .....-.+ |...+..+ .+|. +...+..-..+.+.+++
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k---~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGK---LVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTE---EEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred CcccceeeecccccceeEEEeeccce---EEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccch
Confidence 999987655 4567788889976532 11111111 11122221 2222 22222222233444566
Q ss_pred ccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE----cCCCcEEEEECCCCCeEeEeeCCC-CceEEEEEcCCCceEEe
Q 019603 232 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG----SGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVA 306 (338)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg----s~Dg~i~vWd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s 306 (338)
....+........+.. .-+.-+|++++|... ...++|.|+|..+.+.+.++.... ..+..+.|+++|+.+..
T Consensus 256 ~~~wkvv~~I~~~G~g---lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGG---LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp TTBTSEEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred hhcCeEEEEEECCCCc---ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence 6666666655554432 456779999999987 556899999999998888875322 35888999999996665
Q ss_pred ec---c-eEEEee
Q 019603 307 AS---S-VLSFWI 315 (338)
Q Consensus 307 ~s---~-~~~iw~ 315 (338)
+. . .+.++.
T Consensus 333 S~~~~~~~i~v~D 345 (369)
T PF02239_consen 333 SVWDGNGAIVVYD 345 (369)
T ss_dssp EEE--TTEEEEEE
T ss_pred EEecCCCEEEEEE
Confidence 43 2 455553
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=8.6e-11 Score=105.84 Aligned_cols=186 Identities=15% Similarity=0.210 Sum_probs=140.8
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeeeeee----cCcc-EEEE--------------------cCCCCEEEEEEcCCeE
Q 019603 127 PVNDSFMSGSLDHSVRIWDLRVNACQGILRL----RGRP-TVAF--------------------DQQGLVFAVAMEAGAI 181 (338)
Q Consensus 127 ~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~----~~~~-~~~~--------------------~~~~~~~~~~~~dg~i 181 (338)
|...++|....||.+||||...++....+.. .+.. ...| +.+-.+++.|..-|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4457899999999999999987765433322 1111 1111 2234578888899999
Q ss_pred EEEeCCCCCCCCCeeEE-ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC
Q 019603 182 KLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~-~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 260 (338)
.+|+.... .+..++ ...|.+.|.++.++.+-..|.+++.|..+..|+..+....+.+... ...+..++.+|||+
T Consensus 83 ~~ys~~~g---~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGG---EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--KPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCC---eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--CCccceEEEcCCCC
Confidence 99987543 233333 3678889999999888888999999999999998888777766543 34577899999999
Q ss_pred EEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCC-----CceEEeec---ceEEEeeeCCC
Q 019603 261 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-----RAMFVAAS---SVLSFWIPNPS 319 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~l~s~s---~~~~iw~~~~~ 319 (338)
.|+++| ++|++||+++++.+..|.||.+.|.+++|--+ |.++.+.. ..+.+|.....
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 999987 58999999999999999999999999999987 55555543 35778876653
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.37 E-value=5.6e-12 Score=110.29 Aligned_cols=259 Identities=16% Similarity=0.203 Sum_probs=181.2
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEE
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (338)
+.+.++.+|.+|+-|+.-|.+-.+|+.++++..-+.. ...|.-+.|-++...+..+-+ +.+.+||-...+ +
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-------~y~yvYD~~GtE-l 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-------KYVYVYDNNGTE-L 203 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-------ceEEEecCCCcE-E
Confidence 6788999999999999999999999999887543321 223444555555443332211 445666644333 3
Q ss_pred EeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 019603 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRS 188 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~i~i~d~~~ 188 (338)
.-++.| ..|..+.|-|---.|+++|.-|-++.-|+.+|+.+..+...... .+.-+|-+-++-.|...|+|-+|...+
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 334433 57888999998778999999999999999999887666654433 345567677888899999999998654
Q ss_pred CCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC
Q 019603 189 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D 268 (338)
..|+..+ -.|.+.|.++++.|+|+|+++++.|+.+.|||++.-.....+.. +.....++||..|.+ ..|..
T Consensus 283 --kePLvKi--LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~SqkglL--A~~~G 353 (545)
T KOG1272|consen 283 --KEPLVKI--LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKGLL--ALSYG 353 (545)
T ss_pred --cchHHHH--HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCccccccccccce--eeecC
Confidence 2344333 36889999999999999999999999999999976543333322 234566788865543 33444
Q ss_pred CcEEEEECC-C--CCeEeEeeCC--CCceEEEEEcCCCceEEeec
Q 019603 269 GTLHAWNIN-T--RNEVACWNGN--IGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 269 g~i~vWd~~-~--~~~~~~~~~h--~~~v~~l~~~p~~~~l~s~s 308 (338)
-.|.||.=. . +..-..+..| .+.|..|.|.|-...|-.|-
T Consensus 354 ~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 354 DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 589999632 2 2333334344 47899999999887777764
No 236
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2.7e-11 Score=108.10 Aligned_cols=216 Identities=16% Similarity=0.227 Sum_probs=142.2
Q ss_pred EEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEee-cCCccceEEEEEcCC--CCEEEEEECCCe
Q 019603 64 TTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYF-KGHKERVISLCMSPV--NDSFMSGSLDHS 140 (338)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~H~~~V~~l~~~~~--~~~l~Sgs~D~~ 140 (338)
.+.+|..-|+++.|+.++..++.+ +++-.+.+||....+++..+ .||+..|.++.|-|- +++++||+.|+.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SG------SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASG------SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhccccceecceeecCCCCEEeec------CCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 346777789999998887765543 44578999999988877766 689999999999884 568999999999
Q ss_pred EEEEECCCcce----------eeeeeecC--ccEEEEcCCC-CEEEEEEcCCeEEEEeCCCCCC-CCCee-----EEecC
Q 019603 141 VRIWDLRVNAC----------QGILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDK-GPFDT-----FLVGG 201 (338)
Q Consensus 141 I~iWd~~~~~~----------~~~~~~~~--~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~-~~~~~-----~~~~~ 201 (338)
|+++|+..-+. ...+..+. ...++..|++ ..+.++++||.++-+|+|.... .+-.. .....
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 99999964211 11111111 1235667777 5888999999999999985321 11110 00111
Q ss_pred CCCceEEEEEcCCCC-EEEEEecCCcEEEEEccC--------CeeEEE---------eeeCCCC-----------CCCee
Q 019603 202 DTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYG--------GEKRCG---------FSLEPSP-----------NTNTE 252 (338)
Q Consensus 202 ~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~--------~~~~~~---------~~~~~~~-----------~~~~~ 252 (338)
.-.+..++..+|... ++++|+.+--.++||.+. +..... +-..+|. ..++.
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 223466889999755 677888888889998321 110000 0001111 11456
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~ 285 (338)
++|+|+|.-|+..=....|+++|+..++....+
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 789999976555444458999999987765544
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=6.6e-08 Score=86.98 Aligned_cols=275 Identities=13% Similarity=0.181 Sum_probs=165.9
Q ss_pred EEEeeCC----CcEEEEEc--CCCeeEeEE-eecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC--CeE--E
Q 019603 42 LVTASDD----DSVRLYDI--VSAKLIKTT-YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD--NRI--L 110 (338)
Q Consensus 42 l~s~s~D----~~i~iWd~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~--~ 110 (338)
++.|+.. +.|..|++ +++++...- .........++++++...+++..... ...+.+..|.+.. +++ +
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEe
Confidence 4455555 68888887 555543211 22334456677777776666554311 1346777777765 333 3
Q ss_pred EeecCCccceEEEEEcCCCCEEEEEE-CCCeEEEEECCC-cceeee---eeec-----------C-ccEEEEcCCCCEEE
Q 019603 111 RYFKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRV-NACQGI---LRLR-----------G-RPTVAFDQQGLVFA 173 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~-~~~~~~---~~~~-----------~-~~~~~~~~~~~~~~ 173 (338)
.........-..++++|++++|+.+. .+++|.++++.. +..... +... . .-.+.++|+|.+++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 33332334455689999999888776 599999999976 333222 2110 0 12478999998665
Q ss_pred EE-EcCCeEEEEeCCCCCCCCCee--EEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEcc--CCeeEEEe--eeC-
Q 019603 174 VA-MEAGAIKLFDSRSYDKGPFDT--FLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY--GGEKRCGF--SLE- 244 (338)
Q Consensus 174 ~~-~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~--~~~~~~~~--~~~- 244 (338)
+. .....|.+|++..... .+.. .........-..+.|+|+++++.+... ++.|.+++.. .+...... ...
T Consensus 160 v~dlG~D~v~~~~~~~~~~-~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTG-KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EEETTTTEEEEEEE-TTS--TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EEecCCCEEEEEEEeCCCc-eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 54 4556899998764321 1211 111133445778999999998766654 6779998876 44332221 111
Q ss_pred -CC--CCCCeeEEECCCCCEEEEE-cCCCcEEEEECC--CCC--eEeEeeCCCCceEEEEEcCCCceEEeec---ceEEE
Q 019603 245 -PS--PNTNTEATFTPDGQYVVSG-SGDGTLHAWNIN--TRN--EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSF 313 (338)
Q Consensus 245 -~~--~~~~~~~~fs~~~~~l~sg-s~Dg~i~vWd~~--~~~--~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~i 313 (338)
.. ......+.++|||++|+.+ -.+.+|-+++++ +++ .+..+......-+.++++|++++|+++. ..+.+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 11 1245678999999998775 467789999994 233 3333443344578999999999999875 47888
Q ss_pred eeeCCC
Q 019603 314 WIPNPS 319 (338)
Q Consensus 314 w~~~~~ 319 (338)
|.+++.
T Consensus 319 f~~d~~ 324 (345)
T PF10282_consen 319 FDIDPD 324 (345)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 877644
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.1e-09 Score=101.80 Aligned_cols=210 Identities=16% Similarity=0.222 Sum_probs=128.8
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC-C--eEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD-H--SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFA 173 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D-~--~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 173 (338)
.+.++|....+. +.+..+...+.+..|+|+|+.|+..+.+ + .|.+||+.+++........+ .....|+|+|..++
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 455556544332 4455567788899999999988766543 2 58888998776432222222 23478999999776
Q ss_pred E-EEcCCe--EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CC--cEEEEEccCCeeEEEeeeCCCC
Q 019603 174 V-AMEAGA--IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 174 ~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
. ...++. |.++|+.... . ..+..+........|+|||+.++..+. ++ .+++++..+++... ....+.
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~---~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~- 350 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKA---L--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE- 350 (448)
T ss_pred EEEeCCCCeEEEEEECCCCC---e--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC-
Confidence 4 556665 5556765432 1 111223334566789999998887764 23 47777877665433 222222
Q ss_pred CCCeeEEECCCCCEEEEEcC-CC--cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec---ceEEEeeeCC
Q 019603 248 NTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 318 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~-Dg--~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~iw~~~~ 318 (338)
.....+|+|||++|+..+. ++ .|.++|+.+++.. .+... .......|+|+++.++..+ +.-.+|..+.
T Consensus 351 -~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 351 -QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred -CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 2345789999999877654 34 4666787776543 34322 2233468999999887765 2334555443
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=4.9e-11 Score=113.64 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=149.8
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc------cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR------PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 191 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 191 (338)
+.|....+...+++++.+..+..+-+||.+.+.....+..... ..+.++++...+++|+..+.+-+|+.. ..+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-EDN 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-ccC
Confidence 3344455566678899999999999999876543322222211 124456777789999999999999977 343
Q ss_pred CCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcE
Q 019603 192 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 271 (338)
Q Consensus 192 ~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i 271 (338)
.+. .+.+|.+.+..+.++.||+++++.+.|+.+++|.+.+.+... -..-+|+..+.+++|.|+ +++|+++|.+.
T Consensus 167 ~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 167 KPI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred Ccc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--eeEEeccceEE
Confidence 333 345899999999999999999999999999999998876544 345578899999999998 99999999999
Q ss_pred EEEECCCCCeEeEeeCCC-CceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 272 HAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 272 ~vWd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
++|..+- +....+++|. ..|+.++.+++....++++ +.+++|...
T Consensus 241 rvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 241 RVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9997754 4455888886 6799999999999999986 678888643
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.1e-09 Score=98.30 Aligned_cols=276 Identities=15% Similarity=0.257 Sum_probs=171.0
Q ss_pred ceeEEEeecCCCEEEE-----eeCCC-----cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 29 KINSLDFHRKDDLLVT-----ASDDD-----SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s-----~s~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
.++.+.|+|.|.+|.| .-.|+ .+++|+++++...-.+........+..|+.+..... -..++.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-------rlv~ne 147 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-------RLVSNE 147 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-------hhhcce
Confidence 6788999999998765 22233 366999988544333332222334555554433211 122367
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCC--EEE-----EEECCCeEEEEECCCcce-----eeeeeecCccEEEEc
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVND--SFM-----SGSLDHSVRIWDLRVNAC-----QGILRLRGRPTVAFD 166 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~--~l~-----Sgs~D~~I~iWd~~~~~~-----~~~~~~~~~~~~~~~ 166 (338)
++.++..+-+.+. -+=|...|+.+.++|... .++ ++|.=..||||...-... .+.|-....-...|+
T Consensus 148 v~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN 226 (566)
T KOG2315|consen 148 VQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWN 226 (566)
T ss_pred EEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEec
Confidence 8888876522211 123678899999998743 333 567778999998752211 122222233346677
Q ss_pred CCCC-EEEEEEc--C---------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe--cCCcEEEEEc
Q 019603 167 QQGL-VFAVAME--A---------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDA 232 (338)
Q Consensus 167 ~~~~-~~~~~~~--d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~--~d~~i~i~~~ 232 (338)
+-|. +|+.++. | .++.++++.... ...-....++|.++.|+|+++.++++- .--.+.|+|+
T Consensus 227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-----~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-----VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred cCCceEEEEEEEeecCCCccccccceEEEEEecCce-----EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 7665 3333322 2 244444433110 111113467899999999998766553 3467889987
Q ss_pred cCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC---CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 233 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~---Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
+ +..+..+ ..++-+.+-|+|.|++++-+|- -|.|-|||+.+.+++..++..... -..|+|||++|++++.
T Consensus 302 r-~~~v~df----~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt--~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 302 R-GKPVFDF----PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT--VFEWSPDGEYFLTATT 374 (566)
T ss_pred C-CCEeEeC----CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce--EEEEcCCCcEEEEEec
Confidence 5 3333222 2345677899999999988764 468999999999999988775444 4899999999999862
Q ss_pred --------eEEEeeeCCCCCCCC
Q 019603 310 --------VLSFWIPNPSSNSTD 324 (338)
Q Consensus 310 --------~~~iw~~~~~~~~~~ 324 (338)
.++||-+........
T Consensus 375 aPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred cccEEecCCeEEEEecCceeehh
Confidence 378998775544433
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.5e-09 Score=98.44 Aligned_cols=236 Identities=16% Similarity=0.186 Sum_probs=140.9
Q ss_pred cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCC
Q 019603 50 SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN 129 (338)
Q Consensus 50 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~ 129 (338)
.|.++|...... +.+......+....|++++..++..+. ......+.++++.+++.... ..-.+......|+|++
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~---~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSF---ENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEe---cCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCC
Confidence 566667654332 333334445666788888877765542 11224688899887764332 2222334467999999
Q ss_pred CEEE-EEECCCe--EEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEc-CCeEEE--EeCCCCCCCCCeeEEecCC
Q 019603 130 DSFM-SGSLDHS--VRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAME-AGAIKL--FDSRSYDKGPFDTFLVGGD 202 (338)
Q Consensus 130 ~~l~-Sgs~D~~--I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-dg~i~i--~d~~~~~~~~~~~~~~~~~ 202 (338)
+.|+ +.+.++. |.+||+.+++......... .....|+|+|..++..+. ++...+ +|..... .......+
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt~~g- 349 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLTFEG- 349 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEecCC-
Confidence 9775 5666775 7777887766433222211 234689999987765543 444444 4554322 11111122
Q ss_pred CCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC-CC--cEEEEEC
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNI 276 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~-Dg--~i~vWd~ 276 (338)
.......|+|||++++..+.++ .|+++|+.+++... +... .......|+|||++|+-.+. +| .+++++.
T Consensus 350 -~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 350 -EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred -CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1233468999999988876643 46667877665432 2111 12234579999998776543 33 3777787
Q ss_pred CCCCeEeEeeCCCCceEEEEEcCC
Q 019603 277 NTRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 277 ~~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
+++....+..+.+.+...+|+|-
T Consensus 425 -~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 425 -DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred -CCCceEECcCCCCCcCCCccCCC
Confidence 45666677777778888999884
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=2.8e-08 Score=89.38 Aligned_cols=272 Identities=16% Similarity=0.221 Sum_probs=160.5
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeC----CCcEEEEEcCC--CeeEe--EEeecccCeeeEEEeecCCeeEEec
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASD----DDSVRLYDIVS--AKLIK--TTYHKKHGADCVCFTHHPSSVICST 88 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~----D~~i~iWd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
+++...+. -...-..|+++|++++|.++.. ++.|..|++.. +.+.. ...........+++++++..++.+.
T Consensus 27 l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 27 LTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp EEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE
T ss_pred ceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE
Confidence 33444432 3444567899999999999877 56899998865 44322 2222233344566666666666553
Q ss_pred CccCCCCCceeEEEEccC-CeEEEe---ec----------CCccceEEEEEcCCCCEEEEEE-CCCeEEEEECCCcc--e
Q 019603 89 KYNLDSTGESLRYLSMYD-NRILRY---FK----------GHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNA--C 151 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~-~~~~~~---~~----------~H~~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~~~--~ 151 (338)
. .++++.++++.. +..... ++ .-.....++.++|++++++... ....|.+|++.... .
T Consensus 106 y-----~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 106 Y-----GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp T-----TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred c-----cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence 2 247888888876 443222 21 1224467899999999876553 33579999986554 3
Q ss_pred ee--eeee---cCccEEEEcCCCCEEEE-EEcCCeEEEEeCCCCCCCCCee---EEec--CC--CCceEEEEEcCCCCEE
Q 019603 152 QG--ILRL---RGRPTVAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDT---FLVG--GD--TAEVCDIKFSNDGKSM 218 (338)
Q Consensus 152 ~~--~~~~---~~~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~---~~~~--~~--~~~i~~v~~sp~~~~i 218 (338)
.. .+.. .+..-+.|+|++.++.+ ...++.|.+|+..... ..+.. .... +. ......+.++|||+++
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l 259 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL 259 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCEE
Confidence 22 2222 12235899999986654 4567889998876211 11111 1110 11 1257789999999988
Q ss_pred EEEec-CCcEEEEEcc--CCeeEE--EeeeCCCCCCCeeEEECCCCCEEEEEc-CCCcEEEEECC--CCCeEeEee-CCC
Q 019603 219 LLTTT-NNNIYVLDAY--GGEKRC--GFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNIN--TRNEVACWN-GNI 289 (338)
Q Consensus 219 ~~~~~-d~~i~i~~~~--~~~~~~--~~~~~~~~~~~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~--~~~~~~~~~-~h~ 289 (338)
+++.. .+.|.+|++. +++... .....+ .....++|+|+|++|+.+. .++.|.+|+++ ++++...-. ...
T Consensus 260 yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~ 337 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPI 337 (345)
T ss_dssp EEEECTTTEEEEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEES
T ss_pred EEEeccCCEEEEEEEecCCCceEEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccC
Confidence 87765 5679999983 343322 222222 2367899999999998875 66789999874 555433322 234
Q ss_pred CceEEEEE
Q 019603 290 GVVACLKW 297 (338)
Q Consensus 290 ~~v~~l~~ 297 (338)
....||.|
T Consensus 338 ~~p~ci~f 345 (345)
T PF10282_consen 338 PSPVCIVF 345 (345)
T ss_dssp SSEEEEEE
T ss_pred CCCEEEeC
Confidence 56677776
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=2.2e-10 Score=97.58 Aligned_cols=184 Identities=18% Similarity=0.294 Sum_probs=128.4
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee---cCccEEEEcCCC-CEEEEEEcCCeEEEEeCCC------
Q 019603 119 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---RGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRS------ 188 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~------ 188 (338)
-+..++|++.-..++.+..|-.|++||-.. .+...++. ....+++|-|.+ ..+++|+.. -|-||....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 466788988767789999999999999766 43333332 223468888865 577788775 466785321
Q ss_pred ----CCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEE
Q 019603 189 ----YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 263 (338)
Q Consensus 189 ----~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~ 263 (338)
+.......+. ...+..|+.|.|.+||..+++++- +..|.|||..++.++.... .....++-+.|||||.+|+
T Consensus 178 ~~~~~s~~~~qvl~-~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQ-DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccchhhee-CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcCCCCEEE
Confidence 1111111111 222368999999999998888776 5679999998887765331 2335677899999999999
Q ss_pred EEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEee
Q 019603 264 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
.+.-|+..++|+.....--..+.--++.|..-.|+|.|++|.-+
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEE
Confidence 99999999999776433223333345699999999999865544
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=8.2e-09 Score=93.09 Aligned_cols=256 Identities=14% Similarity=0.144 Sum_probs=155.1
Q ss_pred EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccce
Q 019603 41 LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERV 120 (338)
Q Consensus 41 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V 120 (338)
++++-..+++|.+.|..+.+.+..+...........+++++..++.++. ++.+.++|+.+++.+.+++.-.+ -
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r------dg~vsviD~~~~~~v~~i~~G~~-~ 80 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR------DGTVSVIDLATGKVVATIKVGGN-P 80 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET------TSEEEEEETTSSSEEEEEE-SSE-E
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC------CCeEEEEECCcccEEEEEecCCC-c
Confidence 3456677899999999999888776544332233556777776665532 36899999999999988875444 5
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeeeeeecCc-------c--EEEEcCCCCEEEEEEc-CCeEEEEeCCCC
Q 019603 121 ISLCMSPVNDSFMSG-SLDHSVRIWDLRVNACQGILRLRGR-------P--TVAFDQQGLVFAVAME-AGAIKLFDSRSY 189 (338)
Q Consensus 121 ~~l~~~~~~~~l~Sg-s~D~~I~iWd~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~-dg~i~i~d~~~~ 189 (338)
.+++++++|++++.+ -.++.+.++|.++.+.++.+...+. . .+..++....++.... .+.|.+.|....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 779999999987755 5799999999999888777664321 1 2344666665555544 488888886543
Q ss_pred CCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeC--CCCCCCee-------EEE--CC
Q 019603 190 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLE--PSPNTNTE-------ATF--TP 257 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~--~~~~~~~~-------~~f--s~ 257 (338)
. +.....+ ..........|+|+++|++++. ..+.+.++|..+++.......- .|+..... ..| +.
T Consensus 161 ~--~~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 161 K--NLKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp S--CEEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred c--ccceeee-cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 2 1211111 1123456788999999887654 5678999998888766543321 12111111 112 22
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEee
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
.+...++.-....+.+|+..+++.++.++...+. .-++-||+++++...
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 3334434434447778999999999999987666 678999999999887
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=4e-09 Score=97.33 Aligned_cols=217 Identities=14% Similarity=0.166 Sum_probs=126.7
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCE--E-EEEECCC--eEEEEECCCcceeeeeeecCc-cEEEEcCCCCE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDS--F-MSGSLDH--SVRIWDLRVNACQGILRLRGR-PTVAFDQQGLV 171 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~--l-~Sgs~D~--~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~ 171 (338)
.+.+.|...++..+ +......+.+=.|+|||+. + +....++ .|.+.|+..++........+. ....|+|||..
T Consensus 166 ~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 45566665554433 4445556677799999874 3 2333443 566668877765433333332 24689999988
Q ss_pred EEEEEc-----CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCc--EEEEEccC-CeeEEEee
Q 019603 172 FAVAME-----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNN--IYVLDAYG-GEKRCGFS 242 (338)
Q Consensus 172 ~~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~--i~i~~~~~-~~~~~~~~ 242 (338)
++.... +..+.+|++........ ..+..+.........|+|||+.++..+. ++. +++++... +.... .
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~--~ 321 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR--L 321 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcc-eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE--E
Confidence 776543 23444466543211111 1122222223456789999998887764 454 45555432 22122 1
Q ss_pred eCCCCCCCeeEEECCCCCEEEEEcCC---CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec---ceEEEeee
Q 019603 243 LEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIP 316 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~~l~sgs~D---g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~iw~~ 316 (338)
+......+....|||||++|+..+.+ ..|++||+.+++.. .+......+....|+||++.|+..+ ..-.||.+
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 22222345678999999988865433 46999999887664 4433345678899999999877543 23345555
Q ss_pred CCC
Q 019603 317 NPS 319 (338)
Q Consensus 317 ~~~ 319 (338)
+..
T Consensus 401 dl~ 403 (428)
T PRK01029 401 SLI 403 (428)
T ss_pred ECC
Confidence 543
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=3.6e-10 Score=95.20 Aligned_cols=269 Identities=13% Similarity=0.145 Sum_probs=147.5
Q ss_pred cCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEE
Q 019603 25 DFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
.-...+..++|||||+ +|.+..-|-.|.+|.+.+.+... +.+.++++...+|.+++......+..... ..+.+..
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCk---dyv~i~~ 164 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCK---DYVQISS 164 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHH---HHHHHHh
Confidence 3456788999999996 56666679999999998877543 23344556666776655443332211000 0011111
Q ss_pred ccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee-cCccEEEEcCCCCEEEEEEcCCeEE
Q 019603 104 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 104 ~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~i~ 182 (338)
......++.++--+-..+++.|+|||..++ +||---...+-..+. -+...+.++|.+.++++|+.|+++|
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEE---------EecchhhheeeeeeeccceeEEEeccccceEEeeccchhhh
Confidence 111112222333333445556666654433 344211111001111 1223455666666666666666665
Q ss_pred EEeCCCCC------------------------------------------------------C--CCCee-EEe-----c
Q 019603 183 LFDSRSYD------------------------------------------------------K--GPFDT-FLV-----G 200 (338)
Q Consensus 183 i~d~~~~~------------------------------------------------------~--~~~~~-~~~-----~ 200 (338)
+.+.-+.+ . .+... .+. .
T Consensus 236 vlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p 315 (447)
T KOG4497|consen 236 VLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP 315 (447)
T ss_pred hhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCC
Confidence 54311000 0 00000 000 0
Q ss_pred CCCCceEEEEEcCCCCEEEEEec--CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 201 GDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 201 ~~~~~i~~v~~sp~~~~i~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.....+..++|++|..++++-.. -+.+.+||++.-+.-. ......++....|+|....|+.+.....+++|-..-
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a---vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA---VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh---hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 01223556899999988776543 3578999986443221 222224678888999988888777777899999875
Q ss_pred CCeEeEeeCCCCceEEEEEcCCCceEEeecce
Q 019603 279 RNEVACWNGNIGVVACLKWAPRRAMFVAASSV 310 (338)
Q Consensus 279 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~ 310 (338)
...+. .....=.|..|.|+-+|.+++-.+..
T Consensus 393 ~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 393 PRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred ceEEe-cCCCCceeeeEEecCCCcEEEEEcCC
Confidence 44443 23333578999999999999988853
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.9e-08 Score=92.96 Aligned_cols=242 Identities=14% Similarity=0.099 Sum_probs=140.3
Q ss_pred cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeE--EecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcC
Q 019603 50 SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVI--CSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSP 127 (338)
Q Consensus 50 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~ 127 (338)
.|.+.|...+.. +.+.........-.|++++..+. ..+. ......|.+.++.+++..+. ....+......|+|
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~---~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSP 240 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSY---KLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSP 240 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEc---cCCCceEEEEECCCCCceEe-ecCCCCccceEECC
Confidence 455566654432 22333333344457787766532 2221 11224678888877654332 22344455689999
Q ss_pred CCCEEEEEEC-----CCeEEEEECCCc---ceeeeeeec-C-ccEEEEcCCCCEEEEEE-cCCeEEEEeCCCCCCCCCee
Q 019603 128 VNDSFMSGSL-----DHSVRIWDLRVN---ACQGILRLR-G-RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDT 196 (338)
Q Consensus 128 ~~~~l~Sgs~-----D~~I~iWd~~~~---~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~ 196 (338)
||+.|+..+. |..+.+||+..+ +........ + .....|+|||..++..+ .+|..++|.+........ .
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~ 319 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-P 319 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-e
Confidence 9998775442 334555787653 222222111 1 13468999999776554 466666665322111111 1
Q ss_pred EEecCCCCceEEEEEcCCCCEEEEEecC---CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEc---CCCc
Q 019603 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS---GDGT 270 (338)
Q Consensus 197 ~~~~~~~~~i~~v~~sp~~~~i~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs---~Dg~ 270 (338)
..+......+....|+|||+.++..+.+ ..+++||..+++..... .....+....|+|||++|+-.+ ....
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~ 396 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT---TSPENKESPSWAIDSLHLVYSAGNSNESE 396 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc---CCCCCccceEECCCCCEEEEEECCCCCce
Confidence 1222233456678899999999887654 36899999887654322 1223456789999999877433 2457
Q ss_pred EEEEECCCCCeEeEeeCCCCceEEEEEcCCC
Q 019603 271 LHAWNINTRNEVACWNGNIGVVACLKWAPRR 301 (338)
Q Consensus 271 i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~ 301 (338)
|++||+..++..... ...+.+...+|+|-.
T Consensus 397 L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 999999877655444 345667778888753
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.9e-07 Score=82.83 Aligned_cols=263 Identities=10% Similarity=0.048 Sum_probs=156.7
Q ss_pred CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc----CCCCCceeEEEEccCCeEEEeecCC-------c
Q 019603 49 DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN----LDSTGESLRYLSMYDNRILRYFKGH-------K 117 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~H-------~ 117 (338)
++|.+.|..+++.+.++.....+- .+ +++++..++.+..+. ....+..|.+||..+.+.+..+.-- -
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999998887765443332 23 777777776554311 1123578999999999988777531 2
Q ss_pred cceEEEEEcCCCCEEEEEE-C-CCeEEEEECCCcceeeeeeecCccE-EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGS-L-DHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 194 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs-~-D~~I~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 194 (338)
..-..++++|+|++++... . +..|-+.|+.+++.+..+...+... +..++...+ +-+.||......+........
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceEE
Confidence 2334678999999887555 3 7999999999998877776544322 222222221 222333333222111000000
Q ss_pred eeEE-ecCCCCce-EEEEEcC-CCCEEEEEecCCcEEEEEccCCe-----eEEEeeeC-----CCCCCCeeEEECCCCCE
Q 019603 195 DTFL-VGGDTAEV-CDIKFSN-DGKSMLLTTTNNNIYVLDAYGGE-----KRCGFSLE-----PSPNTNTEATFTPDGQY 261 (338)
Q Consensus 195 ~~~~-~~~~~~~i-~~v~~sp-~~~~i~~~~~d~~i~i~~~~~~~-----~~~~~~~~-----~~~~~~~~~~fs~~~~~ 261 (338)
.... ..+....+ ..-.|.+ +|+++.++.. |+|.+.|+.... ....+... -.+....-++++|+++.
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 0000 00100000 0003455 7776666555 999999954322 22222111 12233344999999998
Q ss_pred EEEEc----------CCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEeec---ceEEEeeeC
Q 019603 262 VVSGS----------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPN 317 (338)
Q Consensus 262 l~sgs----------~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s---~~~~iw~~~ 317 (338)
++... ..+.|.++|..+++.+..+.- ...++.|+++||++ .|.+.. ..+.+....
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 88732 225799999999999998864 35789999999999 777654 356666543
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.7e-09 Score=94.86 Aligned_cols=280 Identities=16% Similarity=0.202 Sum_probs=160.1
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeC-----------CCcEEEEEcCCCeeEeEEeecccC---eeeEEEeecC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASD-----------DDSVRLYDIVSAKLIKTTYHKKHG---ADCVCFTHHP 81 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-----------D~~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~ 81 (338)
+|.+++-| .|.+ |.-+.|||..+||+|=|. -..++|||+.+|.+.++......+ -+.+.|+++.
T Consensus 240 ~f~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 240 SFDRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD 317 (698)
T ss_pred cHHHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC
Confidence 34444444 4443 788999999999999663 167999999999887765442221 2356788777
Q ss_pred CeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC-----CeEEEEECCCcceeeeee
Q 019603 82 SSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD-----HSVRIWDLRVNACQGILR 156 (338)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D-----~~I~iWd~~~~~~~~~~~ 156 (338)
....... +++|.++..-+-.++..-.-.-..|....|+|.+..||.=... .++-+-.+.+++.+++..
T Consensus 318 Ky~Arm~-------~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 318 KYFARMT-------GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN 390 (698)
T ss_pred ceeEEec-------cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc
Confidence 6665443 2667777654322221111123567778899987666532111 122333333333222211
Q ss_pred ecCcc--EEEEcCCCCEEEEE----------EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC
Q 019603 157 LRGRP--TVAFDQQGLVFAVA----------MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 224 (338)
Q Consensus 157 ~~~~~--~~~~~~~~~~~~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d 224 (338)
+.... .+-|..+|.+|..- +.-..+.||.++... .|+.... -...|...+|.|.|..+++.+.+
T Consensus 391 lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ipve~ve---lke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 391 LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IPVEVVE---LKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CCceeee---cchheeeeeeccCCCeEEEEEcc
Confidence 11111 12334455555432 112345667666422 2333332 24568889999999877655442
Q ss_pred ---CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE---cCCCcEEEEECCCCCeEeEe-eCCCCceEEEEE
Q 019603 225 ---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINTRNEVACW-NGNIGVVACLKW 297 (338)
Q Consensus 225 ---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg---s~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~l~~ 297 (338)
.++.+|...+......+.........+.+-|+|.|++++.+ |..|.+..+|..-..+..+= .-| -.-+.+.|
T Consensus 467 ~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veW 545 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEW 545 (698)
T ss_pred ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceE
Confidence 46777776532222211111112456789999999998874 56789999999842222211 123 34567999
Q ss_pred cCCCceEEeecc
Q 019603 298 APRRAMFVAASS 309 (338)
Q Consensus 298 ~p~~~~l~s~s~ 309 (338)
.|.|++++++++
T Consensus 546 DPtGRYvvT~ss 557 (698)
T KOG2314|consen 546 DPTGRYVVTSSS 557 (698)
T ss_pred CCCCCEEEEeee
Confidence 999999999874
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=6.4e-10 Score=106.23 Aligned_cols=199 Identities=15% Similarity=0.166 Sum_probs=138.0
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCee-eE---EEeecCCeeEEecCccCCCCCceeEEEE
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGAD-CV---CFTHHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
+.|....+.-+.+.++.+..++++-+||...+..+..+.+...... +. .+++.+-.+.++ +.-+.+.+|+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g------sv~~~iivW~ 161 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG------SVFGEIIVWK 161 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec------cccccEEEEe
Confidence 3444456666788899999999999999988776554433322111 11 112222222222 2236788898
Q ss_pred ccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEE
Q 019603 104 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 183 (338)
Q Consensus 104 ~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 183 (338)
....+.-..+.||.+.|.++.++.+|++++|.|.|.++|+|++.+.+... ..
T Consensus 162 ~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------~~-------------------- 213 (967)
T KOG0974|consen 162 PHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------CT-------------------- 213 (967)
T ss_pred ccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------cc--------------------
Confidence 86322222589999999999999999999999999999999997665321 00
Q ss_pred EeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEE
Q 019603 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 263 (338)
Q Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~ 263 (338)
. =+|+..+..+.|.|. ++++++.|-+.++|... +.....|..+.. ..+..++..++...++
T Consensus 214 ------------~---fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~v 274 (967)
T KOG0974|consen 214 ------------G---FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKV 274 (967)
T ss_pred ------------c---ccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEE
Confidence 0 046666777788887 79999999999999643 333333333221 4678899999999999
Q ss_pred EEcCCCcEEEEECCCC
Q 019603 264 SGSGDGTLHAWNINTR 279 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~ 279 (338)
|++.|+.+++|++...
T Consensus 275 T~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 275 TGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeccCcchhhhhhhcc
Confidence 9999999999998754
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=1.4e-07 Score=83.67 Aligned_cols=239 Identities=15% Similarity=0.135 Sum_probs=144.0
Q ss_pred eecCCCEEEEeeC----------CCcEEEEEcCCCeeEeEEeeccc-------CeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 35 FHRKDDLLVTASD----------DDSVRLYDIVSAKLIKTTYHKKH-------GADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 35 ~s~~~~~l~s~s~----------D~~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
++|||+.|+.+.. +..|.+||..+.+.+..+..... ....+.+++++..++.... .-+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~----~p~~ 128 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF----SPSP 128 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC----CCCC
Confidence 8999998777665 78999999999998876653221 1225566666666654431 2247
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC-cce-eeeee-ecC-------ccEEEEcC
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NAC-QGILR-LRG-------RPTVAFDQ 167 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-~~~-~~~~~-~~~-------~~~~~~~~ 167 (338)
.+-++|+.+++.+..+.- .+...-...++.. + ..-+.||.....-+.. ++. ..... ++. .+ .+.+
T Consensus 129 ~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~-~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~ 203 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDV-PDCYHIFPTANDT-F-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSN 203 (352)
T ss_pred EEEEEECCCCcEEEEEeC-CCCcEEEEecCCc-c-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEc
Confidence 899999988887776542 1111111111111 1 1223444444432211 111 11111 111 12 2344
Q ss_pred -CCCEEEEEEcCCeEEEEeCCCCCCC---CCeeEEec-----CCCCceEEEEEcCCCCEEEEEe----------cCCcEE
Q 019603 168 -QGLVFAVAMEAGAIKLFDSRSYDKG---PFDTFLVG-----GDTAEVCDIKFSNDGKSMLLTT----------TNNNIY 228 (338)
Q Consensus 168 -~~~~~~~~~~dg~i~i~d~~~~~~~---~~~~~~~~-----~~~~~i~~v~~sp~~~~i~~~~----------~d~~i~ 228 (338)
+|..+.+..+ |.+.+.|+...... +...+... -.......++++|+++.+++.. ..+.|.
T Consensus 204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 7777766666 99999996432111 11111110 0123344589999999877743 125799
Q ss_pred EEEccCCeeEEEeeeCCCCCCCeeEEECCCCC-EEEEEc-CCCcEEEEECCCCCeEeEee
Q 019603 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGS-GDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 229 i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~-~l~sgs-~Dg~i~vWd~~~~~~~~~~~ 286 (338)
++|..+++........ .....++|+||++ +|++.. .++.|.|.|..+++.++.+.
T Consensus 283 ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 283 VVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 9999988877655432 2577899999999 877665 67889999999999998873
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=1.3e-09 Score=92.40 Aligned_cols=258 Identities=14% Similarity=0.163 Sum_probs=147.7
Q ss_pred HHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
++.+++..++.+..|...|..+-|+-.-+.+++++.|+.+.---.+.+..+..+...... ....+... ..+.
T Consensus 99 edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~-t~~~~d~~--~~fv----- 170 (404)
T KOG1409|consen 99 EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA-SALQFDAL--YAFV----- 170 (404)
T ss_pred hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC-CCCceeeE--EEEe-----
Confidence 467889999999999999999999999999999999998764444555444322111110 00000000 0010
Q ss_pred CCCCCceeEEEE--ccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee-eeeeecC--ccEEEEc
Q 019603 92 LDSTGESLRYLS--MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-GILRLRG--RPTVAFD 166 (338)
Q Consensus 92 ~~~~~~~i~~~~--~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~-~~~~~~~--~~~~~~~ 166 (338)
+...+.+-... .....++.++++|.+.|++++|.+..+.+.||..|..+.+||+.-+.-+ .....+. ...+..-
T Consensus 171 -Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 -GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred -cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 01112233333 3345678889999999999999999999999999999999998544321 1111111 1223333
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCe-----------------------eEEe--cCC----CCceEEEEEcCCCCE
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFD-----------------------TFLV--GGD----TAEVCDIKFSNDGKS 217 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~-----------------------~~~~--~~~----~~~i~~v~~sp~~~~ 217 (338)
+.-..+.++..||.|-+|+++........ ...+ ..| .+...+..-+.....
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~ 329 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSS 329 (404)
T ss_pred hhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccc
Confidence 44467888999999999997642211000 0000 000 011111111111112
Q ss_pred EEEEecCCcEEEEEccCC-----eeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 218 MLLTTTNNNIYVLDAYGG-----EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 218 i~~~~~d~~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
+...+..-.+++.+..-. +.......+.....++.+.+...-..|+|+|.|+.|+|||++.
T Consensus 330 ~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 330 YPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 222233334555443211 1100111111123577777877778999999999999999974
No 253
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=1.2e-07 Score=96.34 Aligned_cols=242 Identities=11% Similarity=0.234 Sum_probs=150.9
Q ss_pred eEEEeecC-CCEEEEeeCCCcEEEEEcCCCeeEeEEeecc--------------cCeeeEEEeecCCeeEEecCccCCCC
Q 019603 31 NSLDFHRK-DDLLVTASDDDSVRLYDIVSAKLIKTTYHKK--------------HGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 31 ~~l~~s~~-~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
..++++++ +.+.++-+..+.|++||... ..+....... .....+++..++..++.+ +..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa-----Dt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA-----DTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE-----eCC
Confidence 36788874 66777777889999999864 3333322211 011233443333333332 223
Q ss_pred CceeEEEEccCCeEEEeecC--C---------------ccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeeee-
Q 019603 96 GESLRYLSMYDNRILRYFKG--H---------------KERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILR- 156 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~--H---------------~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~- 156 (338)
.+.|+.++..++. +.++.+ . -+.-..++++| ++..+++.+.++.|++||...+... .+.
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 3678888876654 333311 0 12235789999 5567788889999999998766432 111
Q ss_pred ----------------ecCccEEEEcCCCC-EEEEEEcCCeEEEEeCCCCCCCCC---------eeEEecCC--------
Q 019603 157 ----------------LRGRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPF---------DTFLVGGD-------- 202 (338)
Q Consensus 157 ----------------~~~~~~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~-------- 202 (338)
+....-++++|++. ++++...++.|++||..+...... ..+.....
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 01112378899987 566667789999999764321000 00000000
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC------------CCCCCeeEEECCCCCEEEEEcCCCc
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------------SPNTNTEATFTPDGQYVVSGSGDGT 270 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~------------~~~~~~~~~fs~~~~~l~sgs~Dg~ 270 (338)
-..-..+.++|+|..+++-..++.|++||..++..... ...+ .......++++++|+.+++-+.++.
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti-aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL-AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE-eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 11234788999999888888899999999877654422 1111 1134667999999999999999999
Q ss_pred EEEEECCCCCe
Q 019603 271 LHAWNINTRNE 281 (338)
Q Consensus 271 i~vWd~~~~~~ 281 (338)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999998764
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=4.6e-09 Score=90.45 Aligned_cols=198 Identities=12% Similarity=0.199 Sum_probs=139.0
Q ss_pred CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc-----eeeeeeecCccEEEEcC-CCCEEEEEEcC--CeEEEEeC
Q 019603 115 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----CQGILRLRGRPTVAFDQ-QGLVFAVAMEA--GAIKLFDS 186 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~d--g~i~i~d~ 186 (338)
.-+++|.+++.. +..|++|-.+|.+.+|..+.+. ........+...+.-++ ...+++.|+.. ..+++||+
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence 345566655443 4588899999999999987443 21111111111222233 33466778888 88999998
Q ss_pred CCCCC------CCCeeEEecCCCCceEEEEEcCC--CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 187 RSYDK------GPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 187 ~~~~~------~~~~~~~~~~~~~~i~~v~~sp~--~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
..... .+.+.+- --....++++.|-|. ...+++++.-+.+++||...+.. ...++......++++...|.
T Consensus 181 e~~~qiw~aKNvpnD~L~-LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLG-LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred ccceeeeeccCCCCcccc-ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-ceeEeccccCcceeeeecCC
Confidence 75321 1111100 011345778889887 77899999999999999875432 22233333467889999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCCeEeE-eeCCCCceEEEEEcCCCceEEeec--ceEEEeee
Q 019603 259 GQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 259 ~~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~ 316 (338)
|.++++|..-|.+..+|++.++.... |++-.|+|.+|.-+|..+++|+++ .-++|+..
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 99999999999999999999988877 899999999999999999999998 45777753
No 255
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.17 E-value=1.2e-10 Score=101.99 Aligned_cols=229 Identities=11% Similarity=0.134 Sum_probs=158.2
Q ss_pred CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc
Q 019603 71 GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA 150 (338)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~ 150 (338)
+...+.++.++..++.+.. -+.+-.+|..++++...+. -...|.++.|-.+..+|| ...-+-+.|||- .|.
T Consensus 131 GPY~~~ytrnGrhlllgGr------KGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~A-VAQK~y~yvYD~-~Gt 201 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGR------KGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFA-VAQKKYVYVYDN-NGT 201 (545)
T ss_pred CCeeeeecCCccEEEecCC------ccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHH-hhhhceEEEecC-CCc
Confidence 3344455555555554322 2556777777777666553 346778888876555554 456688999994 343
Q ss_pred eeeeeeec-CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEE
Q 019603 151 CQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 229 (338)
Q Consensus 151 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i 229 (338)
.++.++.+ ...-+.|-|-..++++++..|.++.-|+..+.. ... +....+.+..|.-+|-...+-+|...|+|.+
T Consensus 202 ElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---Va~-~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 202 ELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---VAS-IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred EEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhh---hHH-HHccCCccchhhcCCccceEEEcCCCceEEe
Confidence 33333322 234467888888999999999999999765431 100 1112344666777888777888999999999
Q ss_pred EEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 230 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
|.....+.. ..+..|.+.+.++++.++|.|++|.|-|..++|||++.-..+.++.. .-....|++|..|.+.++.+.
T Consensus 278 WSP~skePL--vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 278 WSPNSKEPL--VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred cCCCCcchH--HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCC
Confidence 986554432 24456778899999999999999999999999999997766666543 345677999988876666677
Q ss_pred eEEEee
Q 019603 310 VLSFWI 315 (338)
Q Consensus 310 ~~~iw~ 315 (338)
.+.||.
T Consensus 355 ~v~iw~ 360 (545)
T KOG1272|consen 355 HVQIWK 360 (545)
T ss_pred eeeeeh
Confidence 899995
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=8.4e-11 Score=105.27 Aligned_cols=220 Identities=18% Similarity=0.240 Sum_probs=150.7
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC-CeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS-AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
...|.||..+|..++--.+.+-++|+|.|+++|+|.+.. +..++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~----------------------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG----------------------------------- 772 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc-----------------------------------
Confidence 456789999999988777788899999999999998752 11110
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee---c--CccEEEEcC-CCCEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---R--GRPTVAFDQ-QGLVF 172 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~---~--~~~~~~~~~-~~~~~ 172 (338)
+..+..+++.|+.+|.++.|-.+.++++| -|+.|.+||.-.+.....+.. + +..+.+... +..++
T Consensus 773 -------tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~il 843 (1034)
T KOG4190|consen 773 -------TSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHIL 843 (1034)
T ss_pred -------cceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchhe
Confidence 11245668899999999999998888876 579999999876655432221 1 112223322 33344
Q ss_pred EE-EEcCCeEEEEeCCCCCCCC-CeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 173 AV-AMEAGAIKLFDSRSYDKGP-FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 173 ~~-~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
.+ ++...+++++|.|...... ...-...+.+..+.++...|.|+.++++-.+|.+.+.|.++|..+..++-- ....
T Consensus 844 iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdl 921 (1034)
T KOG4190|consen 844 IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDL 921 (1034)
T ss_pred eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc--cchh
Confidence 44 4778999999988754211 000011234566889999999999999999999999999999866544321 1111
Q ss_pred eeEEECCCCCEEEEEcCCCcEEE-EECCCCCeEeEee
Q 019603 251 TEATFTPDGQYVVSGSGDGTLHA-WNINTRNEVACWN 286 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~Dg~i~v-Wd~~~~~~~~~~~ 286 (338)
..++ -|.++.|+....|-++-| |....+....+.+
T Consensus 922 lqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 922 LQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred hhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 1221 356778888888999999 9887776655554
No 257
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=3.7e-08 Score=81.14 Aligned_cols=239 Identities=13% Similarity=0.080 Sum_probs=152.7
Q ss_pred eEEEeecC-----CCEEEEeeCCCcEEEEEcCCCee-EeEEeecccCeeeE---EEeecCCeeEEecCccCCCCCceeEE
Q 019603 31 NSLDFHRK-----DDLLVTASDDDSVRLYDIVSAKL-IKTTYHKKHGADCV---CFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 31 ~~l~~s~~-----~~~l~s~s~D~~i~iWd~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
+++.|-|. -.+|+.||.-|...+|...+.+. +.....+..++... |-...+ ..+.+.+.++++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~--------~~i~sndht~k~ 142 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFP--------LNIASNDHTGKT 142 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccc--------eeeccCCcceeE
Confidence 35677763 34899999999999999986543 22222222322221 111111 123355678888
Q ss_pred EEccCCeEEEeecCCcc--ceEEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeeeeee----cCccEEEEcCCCCEEEE
Q 019603 102 LSMYDNRILRYFKGHKE--RVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRL----RGRPTVAFDQQGLVFAV 174 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~--~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~ 174 (338)
.++..+.... .-|.. .+.+++++++++++++.+....|-.|.+... +.+..+.. ++....+|+.....+|+
T Consensus 143 ~~~~~~s~~~--~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv 220 (344)
T KOG4532|consen 143 MVVSGDSNKF--AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV 220 (344)
T ss_pred EEEecCcccc--eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE
Confidence 8876543222 12333 3888999999999999999999999987543 32222222 23456889999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCe-eEEecCCCCceEEEEEcCCCC--EEEEEecCCcEEEEEccCCeeEEEeeeC-----CC
Q 019603 175 AMEAGAIKLFDSRSYDKGPFD-TFLVGGDTAEVCDIKFSNDGK--SMLLTTTNNNIYVLDAYGGEKRCGFSLE-----PS 246 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~i~~v~~sp~~~--~i~~~~~d~~i~i~~~~~~~~~~~~~~~-----~~ 246 (338)
+.+||++-|||+|........ ......|++.+..+.|+|-|. +++.+-.-+.+.+.|++++......... .|
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 999999999999975432211 111235788999999998654 4555556678999999877543322221 11
Q ss_pred -CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 247 -PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 247 -~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
...+....|+.++.-+.+..++ .+.=|++.++.
T Consensus 301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccccccccccCCCcccccccch-hhheeeccccc
Confidence 2346667788777777666554 46667776543
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.12 E-value=4e-08 Score=88.92 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=133.3
Q ss_pred ecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc---CeeeEEEee----cCCeeEEe------c----CccCCCCCce
Q 019603 36 HRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH---GADCVCFTH----HPSSVICS------T----KYNLDSTGES 98 (338)
Q Consensus 36 s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~------~----~~~~~~~~~~ 98 (338)
.|-..|++....||.+|+||...+++..-+.+..+ ...++.|.. .|....+. + ...+....+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35567999999999999999998876544333221 122222221 01000000 0 0011233578
Q ss_pred eEEEEccCCeEEEeec--CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcCCCCEEEE
Q 019603 99 LRYLSMYDNRILRYFK--GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAV 174 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~--~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 174 (338)
+.++++..++....+. +|.+.|.++.++.+-..|.|++.|+.+..|+.+.++.+..+.... ...+++.|||.++++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 8999999998877775 699999999999888899999999999999998887666555433 345889999999888
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC-----CCEEEEEec-CCcEEEEEcc
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-----GKSMLLTTT-NNNIYVLDAY 233 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-----~~~i~~~~~-d~~i~i~~~~ 233 (338)
|+ +.|++||+++.+. ...+.||.+.|.++.|--+ |++++++.. +..+.+|-..
T Consensus 162 as--~~ik~~~~~~kev----v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEV----VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cc--ceEEEEEccCceE----EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 76 6899999886432 3345789999999998766 777776654 4445566443
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=1.9e-07 Score=83.28 Aligned_cols=270 Identities=19% Similarity=0.265 Sum_probs=171.0
Q ss_pred cceeEEEeecCCCEEEEeeCC---------------CcEEEEEcCCCeeEeEEeecccC--ee-eEEEeecCCeeEEecC
Q 019603 28 GKINSLDFHRKDDLLVTASDD---------------DSVRLYDIVSAKLIKTTYHKKHG--AD-CVCFTHHPSSVICSTK 89 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D---------------~~i~iWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~ 89 (338)
..|.-+.|+|.++||.|=+.- +.+.+||..+|..+.+....... .. .+.|+.+....+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A---- 147 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA---- 147 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh----
Confidence 457888999999999986543 34999999999988766544433 22 455555443222
Q ss_pred ccCCCCCceeEEEEccCCeE-EEeecCC-ccceEEEEEcCCCC--EEE-----EEECCCeEEEEECCCcceee--eeeec
Q 019603 90 YNLDSTGESLRYLSMYDNRI-LRYFKGH-KERVISLCMSPVND--SFM-----SGSLDHSVRIWDLRVNACQG--ILRLR 158 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~-~~~~~~H-~~~V~~l~~~~~~~--~l~-----Sgs~D~~I~iWd~~~~~~~~--~~~~~ 158 (338)
-..+..+.++++ ++.. ...++.- ...|....|+|.++ .|+ ..+.++++++|.+..+..+. .+..-
T Consensus 148 ---Rvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~ 223 (561)
T COG5354 148 ---RVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV 223 (561)
T ss_pred ---hhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee
Confidence 123477888886 3222 1112111 35678888888743 333 56788999999987655433 22222
Q ss_pred CccEEEEcCCCCEEEEEE-----------cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe--cCC
Q 019603 159 GRPTVAFDQQGLVFAVAM-----------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNN 225 (338)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~--~d~ 225 (338)
....+.|.+.|..+++-. ....+.|++++.... +. .. +..+.|-.++|+|.++.+++++ ..-
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V---~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa 298 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PV---EK-DLKDPVHDFTWEPLSSRFAVISGYMPA 298 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ce---ec-cccccceeeeecccCCceeEEeccccc
Confidence 333467777777554321 124566777653221 11 11 3467799999999998877666 456
Q ss_pred cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC---CcEEEEECCCCCeEe-EeeCCCCceEEEEEcCCC
Q 019603 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRR 301 (338)
Q Consensus 226 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D---g~i~vWd~~~~~~~~-~~~~h~~~v~~l~~~p~~ 301 (338)
.+.++|+..+ ....+ ....-..+.|||.+++++.++-| |.|-+|+...+..+. .+.+... .-..|+||+
T Consensus 299 ~~s~~~lr~N-l~~~~----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~ 371 (561)
T COG5354 299 SVSVFDLRGN-LRFYF----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDG 371 (561)
T ss_pred ceeecccccc-eEEec----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCc
Confidence 7888887654 32211 12234457899999999997765 579999998765444 6765432 347899999
Q ss_pred ceEEeec--------ceEEEeeeC
Q 019603 302 AMFVAAS--------SVLSFWIPN 317 (338)
Q Consensus 302 ~~l~s~s--------~~~~iw~~~ 317 (338)
+++.+.. ..++||.+.
T Consensus 372 qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 372 QFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred eEEEecCCCcccccCcceEEEEec
Confidence 9887763 248899755
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=6e-09 Score=96.22 Aligned_cols=242 Identities=14% Similarity=0.263 Sum_probs=158.2
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
.....++.|+.+..|++.||.||.+|+-.+.+...- ....+ +...+ +
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d----~~~~g------------laa~s-----------------n 60 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD----LNKSG------------LAAAS-----------------N 60 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCc----ccccc------------ccccc-----------------c
Confidence 356789999999999999999999999988654311 00000 00000 1
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeeeeeecC---ccEEEEcCCCCEEEEEEcCCeEE
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~dg~i~ 182 (338)
-..-+++.||+..|.-+.|..+...|-|...+|.|.+|-+-+++ +...+.... ..+++|+.+|..+.....||.|-
T Consensus 61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 11235688999999999999999999999999999999987664 222222222 23467889999999999998876
Q ss_pred EEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe-----eEEEeeeC----CCCCCCeeE
Q 019603 183 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-----KRCGFSLE----PSPNTNTEA 253 (338)
Q Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~-----~~~~~~~~----~~~~~~~~~ 253 (338)
+=.+.... +....+ .......+.|+||.+.++++-.++.++++|...+- ..+..... ..+..+-.+
T Consensus 141 VGsvdGNR---IwgKeL--kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 141 VGSVDGNR---IWGKEL--KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred EEeeccce---ecchhc--chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence 53221100 000000 11224568899999999999999999999865331 11111111 011123333
Q ss_pred EE--------CCCCCEEEEEcCCCcEEEEECCC-CCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 254 TF--------TPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 254 ~f--------s~~~~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.| -|+-..|+.+=.+|.+.+-.-.+ +.++..=.+ -.|....|+|+|..||.++
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEcc
Confidence 33 25778899999999988876543 344332222 4678899999999999987
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.3e-08 Score=91.89 Aligned_cols=198 Identities=13% Similarity=0.256 Sum_probs=130.8
Q ss_pred CCccceEEEEEcCCCCE-EEEEECCCeEEEEECCCccee----------------------------eeeeecCc-----
Q 019603 115 GHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQ----------------------------GILRLRGR----- 160 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~~~-l~Sgs~D~~I~iWd~~~~~~~----------------------------~~~~~~~~----- 160 (338)
+|...-+.+..+|||+| ++||-.--.|++||+..-... ..+.+|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 47788888999999997 568889999999998632110 00111100
Q ss_pred ----cE----EEEc-CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEE
Q 019603 161 ----PT----VAFD-QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 231 (338)
Q Consensus 161 ----~~----~~~~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~ 231 (338)
|. ++++ |...++++|+.. .|.=+++..+.. +..+ ......+++|..+|-..++++|+.+|.|..||
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~-evYRlNLEqGrf--L~P~--~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRF--LNPF--ETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCc-ceEEEEcccccc--cccc--ccccccceeeeecCccceEEecccCceEEEec
Confidence 00 1111 233444444433 343345443221 1111 12346789999999999999999999999999
Q ss_pred ccCCeeEEEeeeC----CCC-----CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC--CCceEEEEEcCC
Q 019603 232 AYGGEKRCGFSLE----PSP-----NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPR 300 (338)
Q Consensus 232 ~~~~~~~~~~~~~----~~~-----~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h--~~~v~~l~~~p~ 300 (338)
.++......+... .++ ..++++.|+-+|-.++.|..+|.|+|+|+++.+++. .+.| .-+|..|.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDT 282 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeeccccc
Confidence 8765444333221 122 348999999999999999999999999999877654 3444 357889999886
Q ss_pred --CceEEeec-ceEEEeeeCC
Q 019603 301 --RAMFVAAS-SVLSFWIPNP 318 (338)
Q Consensus 301 --~~~l~s~s-~~~~iw~~~~ 318 (338)
+..+++.+ ..++||....
T Consensus 283 ~~q~~v~S~Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 283 DQQNKVVSMDKRILKIWDECT 303 (703)
T ss_pred CCCceEEecchHHhhhccccc
Confidence 56788887 4689997553
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=7.5e-07 Score=76.60 Aligned_cols=226 Identities=14% Similarity=0.221 Sum_probs=145.0
Q ss_pred CceeEEEEccC--CeE-EEeecCCccceEEEEEcCCCCEEEEEECC---CeEEEEECC--Cccee--eeeeecCc--cEE
Q 019603 96 GESLRYLSMYD--NRI-LRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLR--VNACQ--GILRLRGR--PTV 163 (338)
Q Consensus 96 ~~~i~~~~~~~--~~~-~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---~~I~iWd~~--~~~~~--~~~~~~~~--~~~ 163 (338)
+..|++|++.+ ++. ...+..+....+-++|+|+++.|.++-.+ |.|-.|.+. .|+.. ......+. .-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46788888863 222 22234577888999999999998877654 777776554 35542 22222222 348
Q ss_pred EEcCCCCEEEEE-EcCCeEEEEeCCCCC-CCCCeeEEec----CC----CCceEEEEEcCCCCEEEEEec-CCcEEEEEc
Q 019603 164 AFDQQGLVFAVA-MEAGAIKLFDSRSYD-KGPFDTFLVG----GD----TAEVCDIKFSNDGKSMLLTTT-NNNIYVLDA 232 (338)
Q Consensus 164 ~~~~~~~~~~~~-~~dg~i~i~d~~~~~-~~~~~~~~~~----~~----~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~ 232 (338)
+++++|.+++++ ...|.|.++.++... .......... .| ...+-...+.|++++++++.- .++|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 999999866655 567899999876421 1111011100 01 122666789999999887764 578999998
Q ss_pred cCCeeEEEeeeCCC-CCCCeeEEECCCCCEEEEEcC-CCcEEEEECCCC-CeEeEeeCC---------CCceEEEEEcCC
Q 019603 233 YGGEKRCGFSLEPS-PNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTR-NEVACWNGN---------IGVVACLKWAPR 300 (338)
Q Consensus 233 ~~~~~~~~~~~~~~-~~~~~~~~fs~~~~~l~sgs~-Dg~i~vWd~~~~-~~~~~~~~h---------~~~v~~l~~~p~ 300 (338)
..|......+..-. -.....+.|+|++++.+...+ +++|.||.++.. ..+..++.+ ..+...|..+||
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 87754432221111 124567999999999887764 889999999873 233333211 345677999999
Q ss_pred CceEEeecc---eEEEeeeCCCCC
Q 019603 301 RAMFVAASS---VLSFWIPNPSSN 321 (338)
Q Consensus 301 ~~~l~s~s~---~~~iw~~~~~~~ 321 (338)
|++|.++-. .|.++.+++.+.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCC
Confidence 999999863 567777776644
No 263
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=5.5e-07 Score=82.80 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=118.4
Q ss_pred ceEEEEEcCCCCE-EEEEEC---CCeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEEEEE-EcC--CeEEEEeCCCCC
Q 019603 119 RVISLCMSPVNDS-FMSGSL---DHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVA-MEA--GAIKLFDSRSYD 190 (338)
Q Consensus 119 ~V~~l~~~~~~~~-l~Sgs~---D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~d--g~i~i~d~~~~~ 190 (338)
.+..-.|+|+++. ++..+. +..|.++|+.+++........+. ....|+|||..++.. ..+ ..|.++|+....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 7778999999984 554443 35688889988876544443332 246799999866543 333 456666765432
Q ss_pred CCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-C--cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 191 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
. ..+ ...........|+|||+.++..+.. + .|+++++.+++..... ..+.. ...|||||++|+-.+.
T Consensus 269 ~----~~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~~----~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 269 L----TQI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGKN----NSSVSTYKNYIVYSSR 338 (419)
T ss_pred E----EEc-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCCc----CceECCCCCEEEEEEc
Confidence 1 111 1122223345799999988887743 2 5888888777653322 11211 2489999998876654
Q ss_pred C---------CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec---ceEEEeeeCCCC
Q 019603 268 D---------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS 320 (338)
Q Consensus 268 D---------g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~iw~~~~~~ 320 (338)
. ..|++.|+.++.. +.+... +......|+|||+.++..+ ..-.++.++...
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3 3688889887754 444433 3344689999999877765 234566655443
No 264
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.02 E-value=1.2e-09 Score=64.63 Aligned_cols=38 Identities=37% Similarity=0.745 Sum_probs=36.3
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEE
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 145 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd 145 (338)
+++..+++|.+.|++++|+|++++|+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57888999999999999999999999999999999997
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=2e-09 Score=108.03 Aligned_cols=186 Identities=20% Similarity=0.323 Sum_probs=137.3
Q ss_pred cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc---EEEEcCCCCEEEEEEcCCeEEEEeCCCCC
Q 019603 114 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---TVAFDQQGLVFAVAMEAGAIKLFDSRSYD 190 (338)
Q Consensus 114 ~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 190 (338)
+-|-..|.++.-+|...+.+||+.||.|++|.-..++.+..++..+.. ...|+.+|..+.++..||.+-+|....
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence 345567777888888889999999999999998888776666655442 256888999999999999999997652
Q ss_pred CCCCeeEEecCCCCceEEEEEcCCCCEEEEEec---CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 191 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
.++ +....|+....++.|-. ..+++.+. ++++.+||......... .-..|...++.+++-|..+.|+|||.
T Consensus 2283 -k~~--~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2283 -KPY--TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL-VHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -cce--eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce-eeeecCCCceEEEEcCcceEEEecCC
Confidence 111 11224555566666654 34454443 56899999654332221 12567788999999999999999999
Q ss_pred CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 268 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 268 Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+|.|.+||++.++....|+. ++ ...+|++++ +.++||..+
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcc
Confidence 99999999998888777765 44 566888887 579999765
No 266
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=1.1e-09 Score=64.89 Aligned_cols=38 Identities=24% Similarity=0.515 Sum_probs=36.1
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEE
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYD 55 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd 55 (338)
++..+|.+|.++|++|+|+|++.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46789999999999999999999999999999999997
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.1e-05 Score=69.58 Aligned_cols=266 Identities=15% Similarity=0.208 Sum_probs=163.7
Q ss_pred cCCcceeEEEeecCCCEEEEeeCC---CcEEEEEcCC--CeeEeEE--eecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDD---DSVRLYDIVS--AKLIKTT--YHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D---~~i~iWd~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.+-+..+-|+|+|+++.|.++-.+ +.|-.|.+.. |++.... ....++...+++++++..++++. |.. +
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An-Y~~----g 111 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN-YHS----G 111 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE-ccC----c
Confidence 456778889999999999987654 7788887754 5543221 11223334567777766666554 322 6
Q ss_pred eeEEEEccC-CeEEE--eecCCccc----------eEEEEEcCCCCEEEEEE--CCCeEEEEECCCcceeee----eee-
Q 019603 98 SLRYLSMYD-NRILR--YFKGHKER----------VISLCMSPVNDSFMSGS--LDHSVRIWDLRVNACQGI----LRL- 157 (338)
Q Consensus 98 ~i~~~~~~~-~~~~~--~~~~H~~~----------V~~l~~~~~~~~l~Sgs--~D~~I~iWd~~~~~~~~~----~~~- 157 (338)
.|.++-+.. |.+.. .+..|.+. +....+.|+++++++.. .| .|.+|++..+..... ++.
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC
Confidence 788887744 43321 12336655 88899999999988775 44 489999987654322 111
Q ss_pred cCccEEEEcCCCCEEE-EEEcCCeEEEEeCCCCCCCCCeeEEe-----c--CCCCceEEEEEcCCCCEEEEEec-CCcEE
Q 019603 158 RGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLV-----G--GDTAEVCDIKFSNDGKSMLLTTT-NNNIY 228 (338)
Q Consensus 158 ~~~~~~~~~~~~~~~~-~~~~dg~i~i~d~~~~~~~~~~~~~~-----~--~~~~~i~~v~~sp~~~~i~~~~~-d~~i~ 228 (338)
.+..-+.|+|++++.. +.--+++|-+|..... .+.+..+.. . .......++..+|||+++.++-+ .+.|.
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 2334589999998654 4456788888876542 111211110 0 11345678899999998887765 34677
Q ss_pred EEEcc--CCeeEEEeeeCC-CCCCCeeEEECCCCCEEEEEcCCC-cEEEEECC--CCCeEeEee-CCCCceEEEEEc
Q 019603 229 VLDAY--GGEKRCGFSLEP-SPNTNTEATFTPDGQYVVSGSGDG-TLHAWNIN--TRNEVACWN-GNIGVVACLKWA 298 (338)
Q Consensus 229 i~~~~--~~~~~~~~~~~~-~~~~~~~~~fs~~~~~l~sgs~Dg-~i~vWd~~--~~~~~~~~~-~h~~~v~~l~~~ 298 (338)
+|.+. ++. ........ +-.......|+|.|++|+.+.+|+ .|.|+.++ +|++..... .......||.|.
T Consensus 270 ~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 270 VFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 77653 332 22111111 112345688999999999988655 58888876 444433332 344555677764
No 268
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=3.9e-09 Score=93.31 Aligned_cols=248 Identities=15% Similarity=0.178 Sum_probs=167.4
Q ss_pred eccCCcceeEEEeecC--CCEEEEeeCCCcEEEEEcC-CCeeE--eEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 23 FSDFGGKINSLDFHRK--DDLLVTASDDDSVRLYDIV-SAKLI--KTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~--~~~l~s~s~D~~i~iWd~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
..||...|....|-|. ..-+++++.||.+++=.+. ++.+. +.+..|...+..++..++....+.+ .+.++
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S-----~geD~ 255 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLS-----CGEDA 255 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccc-----ccccc
Confidence 4589999988889884 4589999999999998764 34332 2334455567777766554433322 23446
Q ss_pred eeEEEEccCCeEEEe--ec-CCcc---ceEEEEEcCCCC-EEEEEECCCeEEEEECCCcce------eeeeeec------
Q 019603 98 SLRYLSMYDNRILRY--FK-GHKE---RVISLCMSPVND-SFMSGSLDHSVRIWDLRVNAC------QGILRLR------ 158 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~--~~-~H~~---~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~------~~~~~~~------ 158 (338)
.+.-+|+........ .+ .+.. ...+++..|.+. .++.|+.|.-+++||.+.-.. ++.+-.+
T Consensus 256 ~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 256 VVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred ceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 777788876543322 22 3444 467788888775 799999999999999874221 1111111
Q ss_pred --CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCC----------CCeeEEecCCC--CceEEEEE-cCCCCEEEEEec
Q 019603 159 --GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG----------PFDTFLVGGDT--AEVCDIKF-SNDGKSMLLTTT 223 (338)
Q Consensus 159 --~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~--~~i~~v~~-sp~~~~i~~~~~ 223 (338)
..+.+.++.++.-++++.+|-.|.+|.-.. ..+ +.......||. ..|-.+.| -|..+|+++|+.
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~-~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSM-GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEecccc-ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 123577887888888889999999995322 111 11122123442 23555554 677888888888
Q ss_pred CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 224 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 224 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
=|.|.||+..+++.+.......| .|+++--+|--..|||.|-|.-|+||--.+
T Consensus 415 CGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 415 CGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 89999999888876655554444 688888899999999999999999998744
No 269
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=1.1e-08 Score=88.50 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=101.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcce----eeeeeecCc-cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCee
Q 019603 122 SLCMSPVNDSFMSGSLDHSVRIWDLRVNAC----QGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 196 (338)
Q Consensus 122 ~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 196 (338)
.+.+++.++.+|.+..++...+++++.... ......... ..+.+........++...|.+.-+|.-.... .-.
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~ 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRC 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCc
Confidence 345677788888888888877877754332 112222111 1233433333333343334444444322111 111
Q ss_pred EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 197 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 197 ~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
..+-||-..++.+.++||++.|+++..|..|++-....-..+..|. .+|...|..++.-+ ++.|+|||+|++||+||+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-lGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-LGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-cccHhheeeeeecc-CceeeecCCCCcEEEEec
Confidence 2334788889999999999999999999999998754333333332 35666677777765 456899999999999999
Q ss_pred CCCCeEeEe
Q 019603 277 NTRNEVACW 285 (338)
Q Consensus 277 ~~~~~~~~~ 285 (338)
.+++.+.++
T Consensus 223 ~sgk~L~t~ 231 (390)
T KOG3914|consen 223 TSGKLLDTC 231 (390)
T ss_pred ccCCccccc
Confidence 999887665
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.97 E-value=2.3e-06 Score=78.10 Aligned_cols=254 Identities=15% Similarity=0.067 Sum_probs=140.3
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCcc
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKE 118 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~ 118 (338)
+..++.++.|+.+..+|..+|+.+....... .+.... ......++.. ..++.+..+|..+++.+..+.....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p-~v~~~~v~v~------~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP-LVANGLVVVR------TNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC-EEECCEEEEE------CCCCeEEEEEcCCCceeeEEccCCC
Confidence 4556666667777777777776654332211 110000 0011222221 2346788999988887766543322
Q ss_pred ceE-----EEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc---c----E--EEEcC--CCCEEEEEEcCCeEE
Q 019603 119 RVI-----SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---P----T--VAFDQ--QGLVFAVAMEAGAIK 182 (338)
Q Consensus 119 ~V~-----~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~---~----~--~~~~~--~~~~~~~~~~dg~i~ 182 (338)
... +... .+..++.++.++.+..+|+++++.......... . . +.-.| .+..+.++..+|.+.
T Consensus 177 ~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 177 ALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVA 254 (377)
T ss_pred ceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEE
Confidence 111 1111 134677888899999999998876433221100 0 0 00011 244666777889999
Q ss_pred EEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEE
Q 019603 183 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 262 (338)
Q Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l 262 (338)
.+|.++... ...... ..... ....+..+++++.++.++.+|..+|+....+...... ....... .+..|
T Consensus 255 a~d~~tG~~--~W~~~~----~~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~-~~ssp~i--~g~~l 323 (377)
T TIGR03300 255 ALDLRSGRV--LWKRDA----SSYQG--PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR-QLTAPAV--VGGYL 323 (377)
T ss_pred EEECCCCcE--EEeecc----CCccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCC-ccccCEE--ECCEE
Confidence 999865431 111111 11111 1124667888888999999999888765433211111 1111111 46789
Q ss_pred EEEcCCCcEEEEECCCCCeEeEeeCCCCceEE-EEEcCCCceEEee-cceEEEe
Q 019603 263 VSGSGDGTLHAWNINTRNEVACWNGNIGVVAC-LKWAPRRAMFVAA-SSVLSFW 314 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~-l~~~p~~~~l~s~-s~~~~iw 314 (338)
+.++.||.|+++|..+++.+..++.+.+.+.. -.+. ++.+++.+ ++.+..|
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence 99999999999999999999888866644433 3333 34433333 3445433
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=1.4e-07 Score=77.81 Aligned_cols=194 Identities=11% Similarity=0.099 Sum_probs=124.2
Q ss_pred eeEEEEccCCe--EEEeecCCccceEEEEEcCC-----CCEEEEEECCCeEEEEECCCcceeeeeeecCccEEE----Ec
Q 019603 98 SLRYLSMYDNR--ILRYFKGHKERVISLCMSPV-----NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVA----FD 166 (338)
Q Consensus 98 ~i~~~~~~~~~--~~~~~~~H~~~V~~l~~~~~-----~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~----~~ 166 (338)
++-+|++.++. .++.+ +.+.|.|. ..+|+.||.-|...+|...+++....+-.....-+. ..
T Consensus 53 sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c 125 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC 125 (344)
T ss_pred eeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhc
Confidence 45566665543 22222 34566653 357999999999999998866532111111111111 11
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccC-CeeEEEeeeCC
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEP 245 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~-~~~~~~~~~~~ 245 (338)
-....+..++.|.+++++++.-...... .+ -..-.+..+.++||+++.++.+..+.|..|.+.. ++.........
T Consensus 126 d~~~~~~i~sndht~k~~~~~~~s~~~~-~h---~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 126 DLKFPLNIASNDHTGKTMVVSGDSNKFA-VH---NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred ccccceeeccCCcceeEEEEecCcccce-ee---ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 1223456778888888887653322111 11 1112377899999999999999999999987643 33332223333
Q ss_pred CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EeEeeCCCCceEEEEEcCCCc
Q 019603 246 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-----VACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~-----~~~~~~h~~~v~~l~~~p~~~ 302 (338)
....-.+.+|+.+...+|++..||++-|||++.... ..+-..|.|.+..+.|+|.|.
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 344556789999999999999999999999986322 223346899999999998665
No 272
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.3e-09 Score=90.84 Aligned_cols=243 Identities=16% Similarity=0.201 Sum_probs=167.7
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
.|...|+.+.-+ ..+++.++|.|+.+|.|....-. ++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is----------Gv-------------------------------- 43 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS----------GV-------------------------------- 43 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCcc----------ce--------------------------------
Confidence 688888888654 36799999999999999532100 00
Q ss_pred cCCeEEEeecCCccceEEEEEcCCCCEEEEEEC-CCeEEEEECCCcceeeeeeecCccE-EE-EcCCC----CEEEEEEc
Q 019603 105 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRGRPT-VA-FDQQG----LVFAVAME 177 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~-D~~I~iWd~~~~~~~~~~~~~~~~~-~~-~~~~~----~~~~~~~~ 177 (338)
+.++.+..|...|.+++.+.++..+.|.+. |+.+|++|+..-.....+++...|- +. +...| .+-+..-.
T Consensus 44 ---EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 44 ---EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFK 120 (558)
T ss_pred ---eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeeccc
Confidence 123345778899999999999999999888 9999999997665555555443332 22 23334 23334457
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC----eeEEE---------eeeC
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG----EKRCG---------FSLE 244 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~----~~~~~---------~~~~ 244 (338)
++.+.++|.+...+.. .....-|..+|.++.++|.+.-+++....|.|..|..... +.... +...
T Consensus 121 sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP 198 (558)
T ss_pred CCCcEEECCcCCcCcc--ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence 7999999977543322 2223457888999999999998888888899999986520 10001 1111
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee--------------------------------CCCC-c
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------------------------------GNIG-V 291 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------------------------------~h~~-~ 291 (338)
......+++.|+|+|..+.+-+.|..||+++..+++.++.+. -|.. .
T Consensus 199 K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~ 278 (558)
T KOG0882|consen 199 KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTV 278 (558)
T ss_pred ccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcc
Confidence 222456789999999999999999999999999887655421 2222 2
Q ss_pred eEEEEEcCCCceEEeecc-eEEEee
Q 019603 292 VACLKWAPRRAMFVAASS-VLSFWI 315 (338)
Q Consensus 292 v~~l~~~p~~~~l~s~s~-~~~iw~ 315 (338)
-..+.|...+++|..++- -|++..
T Consensus 279 ~~~~~fdes~~flly~t~~gikvin 303 (558)
T KOG0882|consen 279 GTNAVFDESGNFLLYGTILGIKVIN 303 (558)
T ss_pred cceeEEcCCCCEEEeecceeEEEEE
Confidence 255778888999999873 355554
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=9e-08 Score=79.83 Aligned_cols=239 Identities=15% Similarity=0.161 Sum_probs=132.7
Q ss_pred eeEEEeec---CCC-EEEEeeCCCcEEEEEcCCCee---EeEEeecccCee-eEE--EeecCCeeEEecCccCCCCCcee
Q 019603 30 INSLDFHR---KDD-LLVTASDDDSVRLYDIVSAKL---IKTTYHKKHGAD-CVC--FTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 30 V~~l~~s~---~~~-~l~s~s~D~~i~iWd~~~~~~---~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
+..+.|.- +|. .++-+-.+|.|.++....... +..+....-.+. +++ ++.....++.+. + .+.+
T Consensus 72 ~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~-----s-~G~~ 145 (339)
T KOG0280|consen 72 EFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSD-----S-RGSI 145 (339)
T ss_pred cceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEc-----C-CCcE
Confidence 44555542 344 556677788888887643221 111111111122 222 333333333221 1 1333
Q ss_pred EEEEccCCeE--EEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCc-ceeee-eeecCccEEE---EcCCCCE
Q 019603 100 RYLSMYDNRI--LRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVN-ACQGI-LRLRGRPTVA---FDQQGLV 171 (338)
Q Consensus 100 ~~~~~~~~~~--~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~-~~~~~-~~~~~~~~~~---~~~~~~~ 171 (338)
...+...... ++++++|.-+.+.+.|+... +.+.|||.|+.+..||+|.. +++.. .+.+..-.++ -.|.+..
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence 3333333333 45889999999999998754 57889999999999999933 33211 1222222222 2357789
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeE--EEee-eCCCC
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKR--CGFS-LEPSP 247 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~--~~~~-~~~~~ 247 (338)
+++|+-|-.|++||.|+..++-+.. ...+.|..+..+|... .++++...+..+|.+...+... ..++ ...|.
T Consensus 226 I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred EEEeccccceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc
Confidence 9999999999999999765533322 2246689999999643 3455556666777765433221 1111 12332
Q ss_pred CCCeeEEECCCCCEEEEEc-CCCcEE-EEECCC
Q 019603 248 NTNTEATFTPDGQYVVSGS-GDGTLH-AWNINT 278 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs-~Dg~i~-vWd~~~ 278 (338)
.-+....|......|||++ -|+.++ +|-.-+
T Consensus 302 Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceeeccccccccceeeeeeccccceeeeeeecc
Confidence 2223333433445677765 466644 554433
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.94 E-value=1.4e-08 Score=94.07 Aligned_cols=280 Identities=17% Similarity=0.248 Sum_probs=173.7
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC-eeEeEEeecc--cCeeeEEEeecCCeeE--EecCccCCCCCceeE
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA-KLIKTTYHKK--HGADCVCFTHHPSSVI--CSTKYNLDSTGESLR 100 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~ 100 (338)
-.+.++++.++|.|+-++.++.-|- .+-|+... ...+ +.+|. -.+.-+.|++++...+ ..+ +...--
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr-~l~h~tpw~vad~qws~h~a~~~wiVst------s~qkai 94 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPR-WLHHITPWQVADVQWSPHPAKPYWIVST------SNQKAI 94 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCe-EEEeccCCCCCce-eeeccCcchhcceecccCCCCceeEEec------Ccchhh
Confidence 3578899999999998888887664 44466432 2211 12221 1244456776665432 211 112334
Q ss_pred EEEcc---CCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcce-eeeee--ecCccEEEEcCCCCEEE
Q 019603 101 YLSMY---DNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNAC-QGILR--LRGRPTVAFDQQGLVFA 173 (338)
Q Consensus 101 ~~~~~---~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~ 173 (338)
+|++. +......+-||+..|+.+.|.|... .+++++.|-.+..||+++... ...+. ....+.+.|+.....+.
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 55553 2233345679999999999999865 789999999999999987653 11111 22345688887666666
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC-CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
+.+..+.+++||.|.... +. ..+.+|...+..+.|... -..+.+++.|+++++|+.........++. .....+..
T Consensus 175 asshg~~i~vwd~r~gs~-pl--~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~ 250 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGST-PL--CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWR 250 (1081)
T ss_pred hhccCCceEEEeccCCCc-ce--EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCccee
Confidence 667778899999986442 22 233456677777777653 23578889999999998654332222221 11234555
Q ss_pred EEECCCCCEEEE--EcCCCcEE---------EEECCC-CCeEeEeeCCCCceEEEEEcCCCc----------eEEeec--
Q 019603 253 ATFTPDGQYVVS--GSGDGTLH---------AWNINT-RNEVACWNGNIGVVACLKWAPRRA----------MFVAAS-- 308 (338)
Q Consensus 253 ~~fs~~~~~l~s--gs~Dg~i~---------vWd~~~-~~~~~~~~~h~~~v~~l~~~p~~~----------~l~s~s-- 308 (338)
-.|-|=|+-... .-++..+. .||..+ ..+++.|.||...|....|-..+. +|++.|
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD 330 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD 330 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC
Confidence 555554432222 11122333 344433 357899999999998877765433 788887
Q ss_pred ceEEEeeeC
Q 019603 309 SVLSFWIPN 317 (338)
Q Consensus 309 ~~~~iw~~~ 317 (338)
.++++|-++
T Consensus 331 ~~lrlWpI~ 339 (1081)
T KOG0309|consen 331 QTLRLWPID 339 (1081)
T ss_pred CceEeeecc
Confidence 479999654
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=3.6e-06 Score=85.82 Aligned_cols=218 Identities=18% Similarity=0.186 Sum_probs=136.1
Q ss_pred CCCceeEEEEccCCeEEEeecC--------------CccceEEEEEcCCCCEE-EEEECCCeEEEEECCCcceeeeee--
Q 019603 94 STGESLRYLSMYDNRILRYFKG--------------HKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILR-- 156 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~--------------H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~~~~~~-- 156 (338)
...+.|++++.... .+..+.+ +-+.-.+++++++++.| ++-...+.|+++|+.++.. .++.
T Consensus 587 s~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~ 664 (1057)
T PLN02919 587 SNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGN 664 (1057)
T ss_pred CCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEecc
Confidence 34467888887543 3333322 12235788999887754 4445568899999876542 2221
Q ss_pred -----------------ecCccEEEEcC-CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe-------cC------CCCc
Q 019603 157 -----------------LRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-------GG------DTAE 205 (338)
Q Consensus 157 -----------------~~~~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~------~~~~ 205 (338)
+.....+++++ ++.++++...++.|++||...... ..+.. .+ .-..
T Consensus 665 G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~ 741 (1057)
T PLN02919 665 GTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQ 741 (1057)
T ss_pred CcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE---EEEecCCccccCCCCccccccccC
Confidence 11112478888 566777778889999998754321 00000 00 0123
Q ss_pred eEEEEEcCCCCEEE-EEecCCcEEEEEccCCeeEEEee-----------eC--------CCCCCCeeEEECCCCCEEEEE
Q 019603 206 VCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEKRCGFS-----------LE--------PSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 206 i~~v~~sp~~~~i~-~~~~d~~i~i~~~~~~~~~~~~~-----------~~--------~~~~~~~~~~fs~~~~~l~sg 265 (338)
...+.++|++++++ +-+.++.|++||..++......- .- ........++|+++|..+++-
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD 821 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD 821 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence 45689999998555 44556899999987664321110 00 001134578999999999999
Q ss_pred cCCCcEEEEECCCCCeEeEeeC--------------CCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 266 SGDGTLHAWNINTRNEVACWNG--------------NIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 266 s~Dg~i~vWd~~~~~~~~~~~~--------------h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+.++.|++||..++.... +.+ .-.....|+++|+++++++-+ ..|++|...
T Consensus 822 s~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 822 SYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 999999999998765543 322 112567899999999877765 357777643
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.92 E-value=3.9e-07 Score=77.69 Aligned_cols=207 Identities=16% Similarity=0.290 Sum_probs=126.4
Q ss_pred cceEEEEEcCCCC--EEEEEECCCeEEEEECCCcceee---------------eee-----ecC----------------
Q 019603 118 ERVISLCMSPVND--SFMSGSLDHSVRIWDLRVNACQG---------------ILR-----LRG---------------- 159 (338)
Q Consensus 118 ~~V~~l~~~~~~~--~l~Sgs~D~~I~iWd~~~~~~~~---------------~~~-----~~~---------------- 159 (338)
.+|..+.|.++++ .++....|++|++|.++.+.... .++ .+.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 5688888987754 56777899999999875332111 000 000
Q ss_pred --ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC-----CCceEEEEEcCCC-CEEEEEecCCcEEEEE
Q 019603 160 --RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-----TAEVCDIKFSNDG-KSMLLTTTNNNIYVLD 231 (338)
Q Consensus 160 --~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~ 231 (338)
..+++++.|+..++++ .|=.|.+|.+.-.. ..+...-+..+ +.-|++..|+|.. ..++.+++.|+|++.|
T Consensus 165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d-~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSA-DDLRINLWNLEIID-QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eEeeeeeecCccceEeec-cceeeeeccccccC-CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 0124555566555544 56688889876422 12222222222 2347788899964 4677888899999999
Q ss_pred ccCCee----EEEeeeCCCC----------CCCeeEEECCCCCEEEEEcCCCcEEEEECC-CCCeEeEeeCCC-------
Q 019603 232 AYGGEK----RCGFSLEPSP----------NTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNI------- 289 (338)
Q Consensus 232 ~~~~~~----~~~~~~~~~~----------~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~h~------- 289 (338)
++.... ...|+....+ ..+..+.|+++|+|++|=+- -+|++||++ ..+++.++.-|.
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 873210 1112211111 34677899999999987532 589999994 567777776552
Q ss_pred -----Cce---EEEEEcCCCceEEeecceEEEeeeCCCCCCCCCCC
Q 019603 290 -----GVV---ACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDEST 327 (338)
Q Consensus 290 -----~~v---~~l~~~p~~~~l~s~s~~~~iw~~~~~~~~~~~~~ 327 (338)
..| ..+.|+-++..+++||-.-.+-..+.+.+.++..+
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~t 367 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFT 367 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeec
Confidence 344 45899999999999995433333344444444333
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=3.2e-09 Score=95.36 Aligned_cols=193 Identities=19% Similarity=0.313 Sum_probs=125.7
Q ss_pred EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-------ceeeeeeecCccE--EEEcCCCCEEEEEEcCCe
Q 019603 110 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGA 180 (338)
Q Consensus 110 ~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~ 180 (338)
+..|.||++.|..+.--.+.+-++|+|.|++||+|.++.. .|.-+.+.+..++ +.|-.+.. .+++.||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~ScD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASCDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeeccCc
Confidence 4568899999998866556678999999999999998742 3555555555443 33333333 34567899
Q ss_pred EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC--CCCE-EEEEecCCcEEEEEccCCeeEEEeeeCCCC---CCCeeEE
Q 019603 181 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKS-MLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEAT 254 (338)
Q Consensus 181 i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~~~~-i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~ 254 (338)
|.+||.-.. .++..++.....+.+..+..-| +... ++.++...+|+++|.+..+..+.++....+ ..+.+++
T Consensus 806 iHlWDPFig--r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 806 IHLWDPFIG--RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred ceeeccccc--chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 999994211 1111122222222222222223 2333 334467889999999999888877765322 4567789
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEee
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
.-+.|.+++.+-++|+|-+-|.++|+.+..|..-.-....++ .|..+.++..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~s 935 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQS 935 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhh
Confidence 999999999999999999999999998887765443333333 2444444443
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=8.1e-07 Score=80.20 Aligned_cols=276 Identities=15% Similarity=0.199 Sum_probs=158.5
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc-----CCCCCceeEEEEcc
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN-----LDSTGESLRYLSMY 105 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~ 105 (338)
+-+.|||.|.||+|-=. ..|.+|--++-..++...| .++..+.|++...+++.-+.-- .+..+..+.+||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~H--p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFYH--PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCccHHHHHhccC--CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 45889999999999865 4599996554333333222 3577778888777666433211 13356789999999
Q ss_pred CCeEEEeecC--CccceEE-EEEcCCCCEEEEEECCCeEEEEECCCcce--eeeeeecCccEEEEcCCCCEEEEEEc--C
Q 019603 106 DNRILRYFKG--HKERVIS-LCMSPVNDSFMSGSLDHSVRIWDLRVNAC--QGILRLRGRPTVAFDQQGLVFAVAME--A 178 (338)
Q Consensus 106 ~~~~~~~~~~--H~~~V~~-l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--d 178 (338)
+|...+.|.. -...++- ..||-|++++|--.. .+|.||+..+-.. .+.++..+.....|+|.+.++|-=.. +
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 9988877765 3333443 579999999987666 5799998765433 23445556666788888766552110 0
Q ss_pred ---CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC----------CcEEEEEccCCeeEEEeeeCC
Q 019603 179 ---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----------NNIYVLDAYGGEKRCGFSLEP 245 (338)
Q Consensus 179 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d----------~~i~i~~~~~~~~~~~~~~~~ 245 (338)
-.+.|..+-+.+. + ....-++..-+.+-|-.+|.++.+--.. -++.|+.++... +. .....
T Consensus 370 ~~parvtL~evPs~~~--i--Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ip-ve~ve 443 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKRE--I--RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IP-VEVVE 443 (698)
T ss_pred CCcceEEEEecCccce--e--eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CC-ceeee
Confidence 1111221111100 0 0000011122345566677776543211 112233222110 00 00001
Q ss_pred CCCCCeeEEECCCCCEEEEEcC---CCcEEEEECCC----CCeEeEeeCCCCceEEEEEcCCCceEEeec-----ceEEE
Q 019603 246 SPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINT----RNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSF 313 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~~l~sgs~---Dg~i~vWd~~~----~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-----~~~~i 313 (338)
-...+...+|-|.|..++.-+. -.++.+|.+++ .+++..|.. ...+.|.|+|.|++++.+. +.+.+
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEE
Confidence 1234667789999988776443 23688888762 344555543 5678899999999999885 35666
Q ss_pred eeeCC
Q 019603 314 WIPNP 318 (338)
Q Consensus 314 w~~~~ 318 (338)
...+-
T Consensus 522 ~D~~~ 526 (698)
T KOG2314|consen 522 YDTDY 526 (698)
T ss_pred Eecch
Confidence 66554
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=3.4e-06 Score=75.00 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=111.2
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCC-eEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDH-SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAM 176 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~-~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 176 (338)
.-+.+.+.+-.++ .+|...|.-..+..+++-++-|..|| .+-|+|.+.++.......-+ ...+..+++|..++++.
T Consensus 343 aFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 343 AFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred EEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc
Confidence 3444444454444 47888899999988888999999999 99999998887543333222 34578899999999998
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC----cEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
....+.++|+.+.... .......+-|+.+.|+|++++++.+--++ .|+++|+.+++....-+... .-.+
T Consensus 421 dr~el~vididngnv~----~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta---~Dfs 493 (668)
T COG4946 421 DRFELWVIDIDNGNVR----LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA---YDFS 493 (668)
T ss_pred CceEEEEEEecCCCee----EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc---cccC
Confidence 8888888888764321 11123456699999999999999876554 68999998776543222222 2234
Q ss_pred EEECCCCCEEEE
Q 019603 253 ATFTPDGQYVVS 264 (338)
Q Consensus 253 ~~fs~~~~~l~s 264 (338)
-+|.|+++||.-
T Consensus 494 PaFD~d~ryLYf 505 (668)
T COG4946 494 PAFDPDGRYLYF 505 (668)
T ss_pred cccCCCCcEEEE
Confidence 578899988764
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.86 E-value=1.6e-08 Score=101.74 Aligned_cols=152 Identities=13% Similarity=0.228 Sum_probs=104.3
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcCCCCEEEEE---EcCCeEEEEeCCCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVA---MEAGAIKLFDSRSYDKG 192 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~ 192 (338)
.+|+.+.|+.+|+.+..+..||.+.+|.... +..-..+.+.... +.|-. ..++++ ..++.+.+||.-....
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~- 2327 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM- 2327 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCC-cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc-
Confidence 7788889999999999999999999998752 2111112222111 22211 223332 3467889999543211
Q ss_pred CCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEE
Q 019603 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 272 (338)
Q Consensus 193 ~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~ 272 (338)
....-..|....+++.|-|..+.+++|+.+|.|.+||.+..+.+..|+. +. ...++++|+..|.|+
T Consensus 2328 --~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2328 --NSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred --cceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceE
Confidence 1112246888999999999999999999999999999865433322221 33 467999999999999
Q ss_pred EEECCCCCeEeEeeC
Q 019603 273 AWNINTRNEVACWNG 287 (338)
Q Consensus 273 vWd~~~~~~~~~~~~ 287 (338)
||++.....++.+..
T Consensus 2394 Iw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEEccccchhhcCch
Confidence 999998888877753
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=5.5e-05 Score=64.68 Aligned_cols=220 Identities=15% Similarity=0.122 Sum_probs=136.1
Q ss_pred eEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE
Q 019603 31 NSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 31 ~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
.+..|.+ ++.++++--..+.|..|+..++.... +.. .....+.+......++.+.. ..+.++|..+++.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PGPNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKV 72 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SSEEEEEEECTTSEEEEEET-------TCEEEEETTTTEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CCCceEEEEccCCEEEEEEc-------CceEEEecCCCcE
Confidence 3678998 67777777778999999998876532 111 12333444422344443322 4556668888765
Q ss_pred EEeecC-----CccceEEEEEcCCCCEEEEEECC--------CeEEEEECCCcceeeeee-ecCccEEEEcCCCCEE-EE
Q 019603 110 LRYFKG-----HKERVISLCMSPVNDSFMSGSLD--------HSVRIWDLRVNACQGILR-LRGRPTVAFDQQGLVF-AV 174 (338)
Q Consensus 110 ~~~~~~-----H~~~V~~l~~~~~~~~l~Sgs~D--------~~I~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~ 174 (338)
...+.. .....+.+++.|+|+..++.... +.|..++.. ++...... +...+-++|+|++..+ ++
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeec
Confidence 443322 45678899999999977776654 567778876 55433332 3334458999999855 46
Q ss_pred EEcCCeEEEEeCCCCCCCCC--eeE-EecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 175 AMEAGAIKLFDSRSYDKGPF--DTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~--~~~-~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
-+..+.|..|++........ ..+ .........-.+++.++|+.+++....+.|.+++.. |+....+.... ..++
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t 228 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPT 228 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEE
Confidence 66778888888753221001 111 111112236678999999988877788999999976 77776666552 3688
Q ss_pred eEEE-CCCCCEEEE
Q 019603 252 EATF-TPDGQYVVS 264 (338)
Q Consensus 252 ~~~f-s~~~~~l~s 264 (338)
+++| .++.+.|+.
T Consensus 229 ~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 229 NCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEESTTSSEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 9999 466555443
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=5.3e-08 Score=82.90 Aligned_cols=167 Identities=10% Similarity=0.082 Sum_probs=115.4
Q ss_pred EEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEc
Q 019603 133 MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 212 (338)
Q Consensus 133 ~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~s 212 (338)
++.|.+..|-+=|+.++....-..........|...+.++..|+..|.|..+|+|....+.......--|...|+++..-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 66777888888888776543211111122244566678899999999999999986533322111111366778887765
Q ss_pred C-CCCEEEEEecCCcEEEEEccCCee---EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee--
Q 019603 213 N-DGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-- 286 (338)
Q Consensus 213 p-~~~~i~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~-- 286 (338)
. +++++.+++.+++|.+||.+--+. +..|+++-....-.-+...+....++++|.|...|||.+..+....+++
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 5 678899999999999999875444 5556555443333445567778899999999999999999998888765
Q ss_pred --CCCCceEEEEEcC
Q 019603 287 --GNIGVVACLKWAP 299 (338)
Q Consensus 287 --~h~~~v~~l~~~p 299 (338)
.....+++++|..
T Consensus 388 ~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 388 YSASEVDIPSVAFDS 402 (425)
T ss_pred Cccccccccceehhc
Confidence 2334677787764
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=8.8e-07 Score=82.29 Aligned_cols=248 Identities=11% Similarity=0.154 Sum_probs=151.4
Q ss_pred HHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE--EeecccCeeeEEEeecCCeeEEecCc
Q 019603 13 TVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT--TYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 13 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
...-+.++++|.||++.|.-+.|+.+.+.|-|...+|.|.+|=+..|..... ....++-|..++|..++..+...-.
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe- 135 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE- 135 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc-
Confidence 3445678889999999999999999999999999999999999987764321 1223345667777777766543321
Q ss_pred cCCCCCceeEEEEccCCeE-EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-------ceeeee----eec
Q 019603 91 NLDSTGESLRYLSMYDNRI-LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-------ACQGIL----RLR 158 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~-~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-------~~~~~~----~~~ 158 (338)
++.+.+=.++.++. -+.+++.. ...+.|++|.+.++-+-..|.+.++|-..+ .|.... ...
T Consensus 136 -----DGavIVGsvdGNRIwgKeLkg~~--l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~ 208 (1189)
T KOG2041|consen 136 -----DGAVIVGSVDGNRIWGKELKGQL--LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNF 208 (1189)
T ss_pred -----cCCEEEEeeccceecchhcchhe--ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCC
Confidence 12222222211110 12233321 124689999998887888899999996432 121111 100
Q ss_pred Cc----------cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC---
Q 019603 159 GR----------PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--- 225 (338)
Q Consensus 159 ~~----------~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~--- 225 (338)
+. +.....|+-..++++...|.++|........ |. .. .....+....|+|+|..+++++.+.
T Consensus 209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-Pv--v~--dtgm~~vgakWnh~G~vLAvcG~~~da~ 283 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-PV--VV--DTGMKIVGAKWNHNGAVLAVCGNDSDAD 283 (1189)
T ss_pred CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-Ce--EE--ecccEeecceecCCCcEEEEccCccccc
Confidence 10 1112346888999999999999865443221 21 11 1235688899999999999998753
Q ss_pred ------cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 226 ------NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 226 ------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.|.++.. -|+....+...+ ..++.++|-..|-.+|-+ -|+.|++=+++
T Consensus 284 ~~~d~n~v~Fysp-~G~i~gtlkvpg--~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 284 EPTDSNKVHFYSP-YGHIVGTLKVPG--SCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred CccccceEEEecc-chhheEEEecCC--ceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 3445443 244444343333 357777777666555543 46666665554
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.6e-06 Score=75.53 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=125.0
Q ss_pred CCcceeEEEeecCCC--EEEE-----eeCCCcEEEEEcCCCeeEeEEeec-ccCeeeEE--EeecCCeeEEecCccCCC-
Q 019603 26 FGGKINSLDFHRKDD--LLVT-----ASDDDSVRLYDIVSAKLIKTTYHK-KHGADCVC--FTHHPSSVICSTKYNLDS- 94 (338)
Q Consensus 26 h~~~V~~l~~s~~~~--~l~s-----~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~- 94 (338)
|...|+.+.+||.+. .+++ .|.-..+|||.......-...... ......+. |..-+..+++......+.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 556788888998643 3333 566678999987632221111111 11222333 333344444332212222
Q ss_pred -----CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEE--EEEECCCeEEEEECCCcceeeeeeecCccEEEEcC
Q 019603 95 -----TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF--MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ 167 (338)
Q Consensus 95 -----~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l--~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
+..++++++.....+.-.+ .-.++|.++.|+|+++.| +.|-.=-++-|+|++. ..+..+.....+.+-|+|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGPRNTAFFNP 321 (566)
T ss_pred CccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCCccceEECC
Confidence 1246777777633333222 247899999999999754 5677788999999853 333333444456789999
Q ss_pred CCCEEEEEE---cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec------CCcEEEEEccCCeeE
Q 019603 168 QGLVFAVAM---EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKR 238 (338)
Q Consensus 168 ~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~------d~~i~i~~~~~~~~~ 238 (338)
.|.+++.++ -.|.+.+||..+.+. +..+. -..-+-+.|+|||+++++++. |+.++||+. +|..+
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~--i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDVPNRKL--IAKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred CCCEEEEeecCCCCCceEEEeccchhh--ccccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 999888765 358999999876432 21111 122445689999999998875 578999996 45444
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.74 E-value=0.00013 Score=65.21 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=121.4
Q ss_pred CCCEEEEEECCCeEEEEECCCcceeeee---eec-Cc--c-E-------EEEcC-CCCEEEEEEcCCeEEEEeCCCCCCC
Q 019603 128 VNDSFMSGSLDHSVRIWDLRVNACQGIL---RLR-GR--P-T-------VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKG 192 (338)
Q Consensus 128 ~~~~l~Sgs~D~~I~iWd~~~~~~~~~~---~~~-~~--~-~-------~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~ 192 (338)
||+.++= +.-|.|.+||..+.+..+.- .+. .. + . -.|++ +|.+++..+ .|...+++.....
T Consensus 277 DGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~-- 352 (668)
T COG4946 277 DGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGY-- 352 (668)
T ss_pred CCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCe--
Confidence 4555442 34478899998766543211 111 00 0 0 11332 566766665 4666776533211
Q ss_pred CCeeEEecCCCCceEEEEEcCCCCEEEEEecCC-cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcE
Q 019603 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 271 (338)
Q Consensus 193 ~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i 271 (338)
... -++...|.-..+.-+++-++.+..|+ .+-|+|..+++... ....-+.+.++..+|+|++++.+-....|
T Consensus 353 ---~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---~e~~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 353 ---SIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---IEKDLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred ---eEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---eeCCccceEEEEEcCCCcEEEEEcCceEE
Confidence 111 14556677777777888888888888 79999998887543 34444678999999999999999888899
Q ss_pred EEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec------ceEEEeeeC
Q 019603 272 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS------SVLSFWIPN 317 (338)
Q Consensus 272 ~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s------~~~~iw~~~ 317 (338)
-+.|+.+++..-.=+..-+-|+..+|||+++++|.+= ..|++..+.
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 9999999987655567779999999999999999983 246666543
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.72 E-value=1.3e-05 Score=71.86 Aligned_cols=279 Identities=11% Similarity=0.100 Sum_probs=166.5
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC---------
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL--------- 92 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 92 (338)
.+..-.-++..++|||.|.+|++.-. ..|.+|.-..+..+....+ ..+..+.|++.+..+..=..-.+
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cccccCcchhheeecCcchheehhhc-cceEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCC
Confidence 34335567889999999999998754 5599999876654433332 34666667666554432111011
Q ss_pred CCCCceeEEEEccCCeEEEeecCCccc--eE-EEEEcCCCCEEEEEECCCeEEEEECCCcce----eeeeeecCccEEEE
Q 019603 93 DSTGESLRYLSMYDNRILRYFKGHKER--VI-SLCMSPVNDSFMSGSLDHSVRIWDLRVNAC----QGILRLRGRPTVAF 165 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~H~~~--V~-~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~----~~~~~~~~~~~~~~ 165 (338)
....+.+.+||..++..+..+.+-..+ .+ -+.|+-+++++|=- -...++|+++ ++.. .+.++..+.....+
T Consensus 104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 104 FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEe
Confidence 112246899999999999988876665 55 57888888776533 2357899997 3321 22333344445667
Q ss_pred cCCC--CEEEE-----EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-----------CCcE
Q 019603 166 DQQG--LVFAV-----AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----------NNNI 227 (338)
Q Consensus 166 ~~~~--~~~~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-----------d~~i 227 (338)
+|.+ ..++. ...+.++++|.+.... .+....+ -...-+.+.|.+.|+++++-.. ..++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeee--EeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 7653 33332 3467788888765322 1111100 0122456789999988664321 1345
Q ss_pred EEEEccCCeeEEEeeeC-CCCCCCeeEEECCCCCEEEEE--cCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceE
Q 019603 228 YVLDAYGGEKRCGFSLE-PSPNTNTEATFTPDGQYVVSG--SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 304 (338)
Q Consensus 228 ~i~~~~~~~~~~~~~~~-~~~~~~~~~~fs~~~~~l~sg--s~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 304 (338)
++++.+.... +.. .-..+|...+|+|.++.+++. -.+-.+.++|++.. .+..+ ..+.=+.+.|+|..+++
T Consensus 258 yl~~~~e~~i----~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~i 330 (561)
T COG5354 258 YLLRITERSI----PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYI 330 (561)
T ss_pred EEEeeccccc----ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEE
Confidence 6666542221 111 234678899999999877664 47888999999753 33322 23334556677777766
Q ss_pred Eeec-----ceEEEeee
Q 019603 305 VAAS-----SVLSFWIP 316 (338)
Q Consensus 305 ~s~s-----~~~~iw~~ 316 (338)
+.++ +++.+|.+
T Consensus 331 l~agF~nl~gni~i~~~ 347 (561)
T COG5354 331 LFAGFDNLQGNIEIFDP 347 (561)
T ss_pred EEecCCccccceEEecc
Confidence 6654 34555543
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=2.7e-05 Score=71.70 Aligned_cols=195 Identities=9% Similarity=0.022 Sum_probs=115.9
Q ss_pred cceeEEEeecCCCE-EEEeeCC---CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEE
Q 019603 28 GKINSLDFHRKDDL-LVTASDD---DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 28 ~~V~~l~~s~~~~~-l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
+.+..-.|+|||+. ++..+.+ ..|.++|+.+++..... ..........|++++..++..... .....+.+++
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~---~g~~~Iy~~d 263 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAP---KGQPDIYLYD 263 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEcc---CCCcEEEEEE
Confidence 36778999999984 5544443 45888899887654322 222234456688888777654321 1234677888
Q ss_pred ccCCeEEEeecCCccceEEEEEcCCCCEEEEEE-CCC--eEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcC--
Q 019603 104 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGS-LDH--SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA-- 178 (338)
Q Consensus 104 ~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs-~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 178 (338)
+.+++..+ +..+........|+|||+.|+-.+ ..+ .|.+.|+..++...... .+.....|+|+|..++.....
T Consensus 264 l~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 264 TNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKNNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCcCceECCCCCEEEEEEcCCC
Confidence 87776544 433443344568999998765444 334 56677887766533222 122235899999987765543
Q ss_pred -------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC---cEEEEEccC
Q 019603 179 -------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYG 234 (338)
Q Consensus 179 -------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~ 234 (338)
..|.+.|+..... ..+..+ .......|+|||+.++..+..+ .+.++++..
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~----~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI----RRLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cccCCCCcEEEEEECCCCCe----EECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 2566667654321 111111 1223478999999888776543 255556543
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=2.2e-05 Score=66.56 Aligned_cols=219 Identities=18% Similarity=0.151 Sum_probs=129.0
Q ss_pred CCCcEEEEEcCCCeeEeEEeecc-cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEE
Q 019603 47 DDDSVRLYDIVSAKLIKTTYHKK-HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCM 125 (338)
Q Consensus 47 ~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~ 125 (338)
++++|..||..+|+.+....... ..............++... .++.+..||..+|+.+..+.. .+.+....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS------GDGNLYALDAKTGKVLWRFDL-PGPISGAP- 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE------TTSEEEEEETTTSEEEEEEEC-SSCGGSGE-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc------CCCEEEEEECCCCCEEEEeec-ccccccee-
Confidence 47899999999999887764422 1111111222344444432 347899999999988766553 22211111
Q ss_pred cCCCCEEEEEECCCeEEEEECCCcceeeee-eecC-----ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe
Q 019603 126 SPVNDSFMSGSLDHSVRIWDLRVNACQGIL-RLRG-----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV 199 (338)
Q Consensus 126 ~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 199 (338)
...+..++.++.|+.|..+|.++++....+ .... .........+..++++..++.+..+|.++.+. ......
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~--~w~~~~ 150 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL--LWKYPV 150 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE--EEEEES
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE--EEEeec
Confidence 223556677778899999999999886663 2221 11112222367788888889999999876432 111111
Q ss_pred cCCC--Cc-------eEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc
Q 019603 200 GGDT--AE-------VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270 (338)
Q Consensus 200 ~~~~--~~-------i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~ 270 (338)
.... .. ...+.+. ++ .+++++.++.+.-+|..+++... +...+ ... ....+++..|+.++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~~~--~~~-~~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLW--SKPIS--GIY-SLPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEE--EECSS---EC-ECEECCCTEEEEEETTTE
T ss_pred CCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEE--EecCC--Ccc-CCceeeCCEEEEEeCCCE
Confidence 1101 00 1222232 34 67777777764444999887553 32211 111 225577888888889999
Q ss_pred EEEEECCCCCeE
Q 019603 271 LHAWNINTRNEV 282 (338)
Q Consensus 271 i~vWd~~~~~~~ 282 (338)
|++||+.+++.+
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999998764
No 289
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.66 E-value=7.1e-05 Score=68.32 Aligned_cols=228 Identities=14% Similarity=0.048 Sum_probs=133.1
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCc
Q 019603 38 KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHK 117 (338)
Q Consensus 38 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~ 117 (338)
.+..++.++.++.+..+|..+|+.+............ ...+...++.. ..++.+..+|..+|+.+......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~--p~v~~~~v~v~------~~~g~l~ald~~tG~~~W~~~~~- 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGG--VGADGGLVFVG------TEKGEVIALDAEDGKELWRAKLS- 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccc--eEEcCCEEEEE------cCCCEEEEEECCCCcEeeeeccC-
Confidence 3678888999999999999999877544332211111 11123333332 22367888898888876654322
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc-------EEEEcCCCCEEEEEEcCCeEEEEeCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-------TVAFDQQGLVFAVAMEAGAIKLFDSRSYD 190 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 190 (338)
+.+.+.-.. .+..++.++.|+.|..||.++++.+..+...... ...+. + ..++.+..++.+..+|.++..
T Consensus 135 ~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 135 SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCC
Confidence 222211111 2456777788999999999998875544332211 01111 2 356677778888888876543
Q ss_pred CCCCeeEEecC---CC--CceEEEEEcC--CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEE
Q 019603 191 KGPFDTFLVGG---DT--AEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 263 (338)
Q Consensus 191 ~~~~~~~~~~~---~~--~~i~~v~~sp--~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~ 263 (338)
. ........ .. .....+.-+| .+..+++++.++.++.+|..+|+......... . ......+..++
T Consensus 212 ~--~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~--~~p~~~~~~vy 283 (377)
T TIGR03300 212 P--LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----Y--QGPAVDDNRLY 283 (377)
T ss_pred E--eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----c--cCceEeCCEEE
Confidence 2 11111000 00 0000000111 35577888889999999998887654443211 1 11223567888
Q ss_pred EEcCCCcEEEEECCCCCeEeEe
Q 019603 264 SGSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~~~~~~~ 285 (338)
.++.||.++++|..+++.+-..
T Consensus 284 v~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EECCCCeEEEEECCCCcEEEcc
Confidence 8899999999999998766444
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.65 E-value=8e-07 Score=77.21 Aligned_cols=163 Identities=16% Similarity=0.245 Sum_probs=102.9
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCCC-C-CCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEee
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRSYDK-G-PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~~~~-~-~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
.++.+..++++..+....+++.+.... . ....+.. ...-+.+.|..+.....++-..|.++-++...-...+...
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 455667777777777766776554322 0 1111111 1112233444445555555555555555443321122234
Q ss_pred eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe-eCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCC
Q 019603 243 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~ 319 (338)
..+|-.-+++++++||+++++|+..|+.|||=.+...-.+..| -||...|..++.-++.. |+++| .++++|.+-..
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecccC
Confidence 4577778899999999999999999999999999876666665 47999999999988866 66665 57999987654
Q ss_pred CCCCCCCCCCccc
Q 019603 320 SNSTDESTDPQAT 332 (338)
Q Consensus 320 ~~~~~~~~~~~~~ 332 (338)
++- .+|..+.++
T Consensus 226 k~L-~t~dl~s~~ 237 (390)
T KOG3914|consen 226 KLL-DTCDLSSLV 237 (390)
T ss_pred Ccc-cccchhHhh
Confidence 433 444444443
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=1.6e-06 Score=82.57 Aligned_cols=184 Identities=13% Similarity=0.232 Sum_probs=133.4
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCc
Q 019603 38 KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHK 117 (338)
Q Consensus 38 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~ 117 (338)
++..++-|+--..+.-+|+.+.+..+.......++..++. +....+++ ..-+++-+-|..+.+.+.++.+|+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G------~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCG------DTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEee------cccceEEeecCCcCceeeeeeccc
Confidence 3456666777777888899988877665555545555543 33333333 233789999999999999999999
Q ss_pred cceEEEEEcCCCCEEEEEECC---------CeEEEEECCCcceeeeeeecCc-cEEEEcCCC-CEEEEEEcCCeEEEEeC
Q 019603 118 ERVISLCMSPVNDSFMSGSLD---------HSVRIWDLRVNACQGILRLRGR-PTVAFDQQG-LVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D---------~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~dg~i~i~d~ 186 (338)
+.|.++. -.|+.|+|||.. .-|+|||+|.-+.+.-+.+... ..+.|.|.- ..+++.++.|..++.|.
T Consensus 218 ~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 218 GSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred cceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccc
Confidence 9998554 458899998864 4569999987665544444333 345677753 47888999999999995
Q ss_pred CCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEE
Q 019603 187 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 231 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~ 231 (338)
......+...+........+..+++++++..++.+-.+|.|.+|.
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 554444444444445555699999999999999999999999996
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.1e-08 Score=93.68 Aligned_cols=228 Identities=16% Similarity=0.187 Sum_probs=145.0
Q ss_pred HHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
-+..+|...++|..|...-++++|+-+.+.|+.|+-.|-|+++++.+|.....
T Consensus 1086 ~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s--------------------------- 1138 (1516)
T KOG1832|consen 1086 FIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES--------------------------- 1138 (1516)
T ss_pred hhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc---------------------------
Confidence 46788999999999999999999999999999999999999999887754432
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEE-EEEECCC-eEEEEECCC-cceeeeeeecCccEEEEcCC
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDH-SVRIWDLRV-NACQGILRLRGRPTVAFDQQ 168 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~-~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~ 168 (338)
+.+|...|+-+.-+.+|..+ .|+++.. ..-+|++.. +...+. ..+...+.|+..
T Consensus 1139 ---------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs--f~ed~~vkFsn~ 1195 (1516)
T KOG1832|consen 1139 ---------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHS--FDEDKAVKFSNS 1195 (1516)
T ss_pred ---------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccCcccc--ccccceeehhhh
Confidence 24566677766666666643 3444444 567888754 122222 223345666655
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEec--CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG--GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
...-+.|+......+||..+.. +..+++.. +....-++..|+|+..+++-- =.+||.+..+.+..|. ..
T Consensus 1196 ~q~r~~gt~~d~a~~YDvqT~~--~l~tylt~~~~~~y~~n~a~FsP~D~LIlnd-----GvLWDvR~~~aIh~FD--~f 1266 (1516)
T KOG1832|consen 1196 LQFRALGTEADDALLYDVQTCS--PLQTYLTDTVTSSYSNNLAHFSPCDTLILND-----GVLWDVRIPEAIHRFD--QF 1266 (1516)
T ss_pred HHHHHhcccccceEEEecccCc--HHHHhcCcchhhhhhccccccCCCcceEeeC-----ceeeeeccHHHHhhhh--hh
Confidence 4444566666788899987643 33332211 223445778899998877632 2578876554433221 11
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEe
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s 306 (338)
. --..-.|+|+|..++.-++ |||+++-+.++....-.. ..|.|+..|..+.+
T Consensus 1267 t-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq--c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1267 T-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ--CAVTFNSTGDVMYA 1318 (1516)
T ss_pred e-ecccccccCCCceEEeech-----hhhhHHHHHHhcCccccc--eEEEeccCccchhh
Confidence 1 1112359999999998875 999998776654432211 24777777765443
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=9.3e-07 Score=74.52 Aligned_cols=251 Identities=14% Similarity=0.224 Sum_probs=136.3
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEe-ecCCeeEEecCccCCCCCceeEEEE
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFT-HHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
.-...|+++.|.-.|.||++|...|.|.+|.-+.... +.-. -...|- +.+.. ..++-.+
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-----ceyk--f~teFQshe~EF-------------DYLkSle 83 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-----CEYK--FFTEFQSHELEF-------------DYLKSLE 83 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccc-----cchh--hhhhhcccccch-------------hhhhhcc
Confidence 3467799999999999999999999999997653220 0000 000010 00000 0011111
Q ss_pred ccCCeEEEeecCCccceEEEEEcCCC-C-EEEEEECCCeEEEEECCCcceeeeeee---------cCccEEEEcCCCCEE
Q 019603 104 MYDNRILRYFKGHKERVISLCMSPVN-D-SFMSGSLDHSVRIWDLRVNACQGILRL---------RGRPTVAFDQQGLVF 172 (338)
Q Consensus 104 ~~~~~~~~~~~~H~~~V~~l~~~~~~-~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 172 (338)
-...|..+.|-.++ + .++-.+.|++|++|.+.......+.+. .+.+.. +++...+
T Consensus 84 ------------ieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~--s~~~l~l 149 (460)
T COG5170 84 ------------IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLT--STKELLL 149 (460)
T ss_pred ------------HHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcC--CHHHhhc
Confidence 12455666665433 2 456668899999999865432111110 010100 0000000
Q ss_pred EEEE-cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE-EEeeeCCCC---
Q 019603 173 AVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSP--- 247 (338)
Q Consensus 173 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~--- 247 (338)
--.+ .|..|....-| .....|...+.++.|+.|.+.++ ++.+=+|-+|++.-...- ......++.
T Consensus 150 prls~hd~iiaa~p~r---------vyaNaH~yhiNSiS~NsD~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmee 219 (460)
T COG5170 150 PRLSEHDEIIAAKPCR---------VYANAHPYHINSISFNSDKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEE 219 (460)
T ss_pred ccccccceEEEeccce---------eccccceeEeeeeeecCchheee-eccceeeeeccccccCCceEEEeccCccHHH
Confidence 0000 11111111111 11235677799999998877555 445668889986532111 112223332
Q ss_pred --CCCeeEEECCCCCEEE-EEcCCCcEEEEECCCC------CeEe----------EeeCCCCceEEEEEcCCCceEEeec
Q 019603 248 --NTNTEATFTPDGQYVV-SGSGDGTLHAWNINTR------NEVA----------CWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 248 --~~~~~~~fs~~~~~l~-sgs~Dg~i~vWd~~~~------~~~~----------~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
..+++..|+|....++ =.++.|.|++-|++.. +.+. -+.+-..+|..+.|+|+|+++++-+
T Consensus 220 LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd 299 (460)
T COG5170 220 LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD 299 (460)
T ss_pred HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence 3567788999754433 3567899999999731 1111 1223356889999999999999988
Q ss_pred -ceEEEeeeCCC
Q 019603 309 -SVLSFWIPNPS 319 (338)
Q Consensus 309 -~~~~iw~~~~~ 319 (338)
-+++||..+-.
T Consensus 300 yltvkiwDvnm~ 311 (460)
T COG5170 300 YLTVKIWDVNMA 311 (460)
T ss_pred cceEEEEecccc
Confidence 58999987643
No 294
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.55 E-value=2.2e-05 Score=65.92 Aligned_cols=202 Identities=12% Similarity=0.063 Sum_probs=123.3
Q ss_pred ceeEEEEccCCeEEE--ee-cCCccceEEEEEcC---CCC-EEEEEECCCeEEEEECCCcceeeeeee-cC-------cc
Q 019603 97 ESLRYLSMYDNRILR--YF-KGHKERVISLCMSP---VND-SFMSGSLDHSVRIWDLRVNACQGILRL-RG-------RP 161 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~--~~-~~H~~~V~~l~~~~---~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~-~~-------~~ 161 (338)
+.+.++++.+.+... ++ .--+..+..+.|.- ++. .++-+-.+|.|.++.....+....+.. .. .-
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 456677776655433 11 12234455555542 233 466777889999986432221111111 11 11
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC-CCEEEEEecCCcEEEEEccCCeeEEE
Q 019603 162 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCG 240 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~~~~~~~ 240 (338)
++.|++.+..++++..+|.+.+.+........ ......|..+..-..|+.. .+.+.+|+.|+.+..||.+..+ .+.
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~--vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i 202 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEK--VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI 202 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeee--cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence 24567788888888888888855533211100 0123456677777778754 3467788889999999998433 333
Q ss_pred ee-eCCCCCCCeeEEECC-CCCEEEEEcCCCcEEEEECCC-CCeEeEeeCCCCceEEEEEcCCCc
Q 019603 241 FS-LEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 241 ~~-~~~~~~~~~~~~fs~-~~~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
++ ...|...|.++.-+| .+.+++||+-|..|++||.++ ++++..- .-.|.||.+.++|.-.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIF 266 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhh
Confidence 44 345556676666554 577999999999999999985 3444332 2348999999999754
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.54 E-value=0.00013 Score=73.54 Aligned_cols=251 Identities=14% Similarity=0.217 Sum_probs=151.1
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEE----EcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLY----DIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
..+.|.++.+-++...++.+..+|-|.+. +..+... .....-..++.+++|+++...++..++ .+++-+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~------~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTG------EGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeC------CCEEEE
Confidence 35789999999999988888899999999 5544432 222333567889999988877765543 123332
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCC---CCEEEEEECCCeEEEEECCCcce------e--------eee-eecCccEE
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPV---NDSFMSGSLDHSVRIWDLRVNAC------Q--------GIL-RLRGRPTV 163 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~---~~~l~Sgs~D~~I~iWd~~~~~~------~--------~~~-~~~~~~~~ 163 (338)
.. ..-+.+....+.++ ....++.|+.+.=.-|--+.++. . ..+ ...+...+
T Consensus 147 mt-----------~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I 215 (928)
T PF04762_consen 147 MT-----------RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI 215 (928)
T ss_pred Ee-----------ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE
Confidence 21 12223333333332 23566666655433332111111 0 001 11234568
Q ss_pred EEcCCCCEEEEEEc------CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec---CCcEEEEEccC
Q 019603 164 AFDQQGLVFAVAME------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYG 234 (338)
Q Consensus 164 ~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~---d~~i~i~~~~~ 234 (338)
+|-.||.++++.+- .+.+|+|+-. +.++ ...+...+--..++|-|.|.+|++... ...|.+|..+
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re----G~L~-stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN- 289 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE----GELQ-STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN- 289 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC----ceEE-eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-
Confidence 89999999988763 3688899732 1111 111111222345789999999988876 2356677643
Q ss_pred CeeEEEeeeC--CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC----CeEeEeeCCCCceEEEEEcCCCc
Q 019603 235 GEKRCGFSLE--PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 235 ~~~~~~~~~~--~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~----~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
|-....|.+. .....+..+.|++|+..||.--.|. |++|-..+- |....+.. ...+..+.|+|...
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKP 361 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCC
Confidence 4344455554 3445788999999999999977665 999998763 33333333 33455599999654
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.53 E-value=5.4e-07 Score=83.92 Aligned_cols=122 Identities=23% Similarity=0.332 Sum_probs=90.9
Q ss_pred eeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCe-eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 21 AIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAK-LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
-.+-||+..|+.+.|+|+.. .+++++.|-.+-.||+.+.. .+-....-..+...+.|+.....++. .+.|+-
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla------sshg~~ 181 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA------SSHGND 181 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh------hccCCc
Confidence 35679999999999999754 89999999999999997643 33333333344555666554333332 234578
Q ss_pred eEEEEccC-CeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCC
Q 019603 99 LRYLSMYD-NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRV 148 (338)
Q Consensus 99 i~~~~~~~-~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~ 148 (338)
+++||..- +.++..+++|...|.++.|..-. ..+++++.|++|+.||..+
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 99999975 45788899999999999987543 3689999999999999753
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=1.6e-06 Score=73.05 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=102.5
Q ss_pred cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeee--eeecCc-------cEEEEcCCC-CEEEEEEcCCeEE
Q 019603 114 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGI--LRLRGR-------PTVAFDQQG-LVFAVAMEAGAIK 182 (338)
Q Consensus 114 ~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-~~~~~--~~~~~~-------~~~~~~~~~-~~~~~~~~dg~i~ 182 (338)
..|.--|.+++|..+...++| +.|-.|.+|++... .+-.. ++.+.. ....|+|.. .++.-.+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 679999999999988888777 45788999998643 22222 222211 124577754 4566677889999
Q ss_pred EEeCCCCC-----CCC-------CeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC---
Q 019603 183 LFDSRSYD-----KGP-------FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--- 247 (338)
Q Consensus 183 i~d~~~~~-----~~~-------~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~--- 247 (338)
+-|+|... +.. ...-.+.+-...|..+.|+|+|++|++-. -.++.|||.+..+ .+.++...|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k-~pikTi~~h~~l~ 325 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK-NPIKTIPMHCDLM 325 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc-CCceeechHHHHH
Confidence 99998421 111 11111122245688999999999888654 4689999976432 2222221111
Q ss_pred ---------CC---CeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 248 ---------NT---NTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 248 ---------~~---~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.. -..+.||.|.+.+++|+-....-++-..
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 11 1357899999999999887777776643
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=0.00012 Score=69.15 Aligned_cols=210 Identities=12% Similarity=0.106 Sum_probs=125.8
Q ss_pred HhccccceeeccCCcceeEEEeecCC------------CEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecC
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKD------------DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHP 81 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~------------~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (338)
..+++.++.+.-|...|+.++|.|-. -+|+++...|.|.+||...+..+--+.++..++.-++|-+..
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence 45788999999999999999997521 256777778999999998887665566677777777776543
Q ss_pred C---eeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEEC-CCcce---ee
Q 019603 82 S---SVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDL-RVNAC---QG 153 (338)
Q Consensus 82 ~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~-~~~~~---~~ 153 (338)
. .++.+ -....++-+|+..+|+....+..-.....|+.+.|-+ +.+.--+..|.+-+-+. ...+. .+
T Consensus 122 d~Srd~Lla-----Ih~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 122 DDSRDVLLA-----IHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred CcchheeEE-----ecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 2 22221 1234689999999998888777666677778998843 44433333455555543 22111 11
Q ss_pred eeeec---Cc-----------------c----------EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCC
Q 019603 154 ILRLR---GR-----------------P----------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 203 (338)
Q Consensus 154 ~~~~~---~~-----------------~----------~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 203 (338)
.++.. .. + .++|+|.-..++...-.+.+.++|++-..+ +...-+. .
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~--l~vvpie--r 272 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC--LAVVPIE--R 272 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce--eEEEEec--c
Confidence 12110 00 0 034566544444444556788888764322 2222222 2
Q ss_pred CceEEEEEcCC--CCEEEEEecCCcEEEEEc
Q 019603 204 AEVCDIKFSND--GKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 204 ~~i~~v~~sp~--~~~i~~~~~d~~i~i~~~ 232 (338)
+.+--+.+-|+ ...++....+|.+.+|-.
T Consensus 273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred CCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 22233445454 345667777888777743
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=0.00011 Score=62.22 Aligned_cols=211 Identities=17% Similarity=0.137 Sum_probs=121.5
Q ss_pred ceeEEEEccCCeEEEeecC---CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEE
Q 019603 97 ESLRYLSMYDNRILRYFKG---HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFA 173 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~---H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
+++..+|..+++.+....- ....+. . ..++++.++.++.++.|..||..+++....+...+.........+..+.
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVA-T-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEE-T-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccc-e-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 6788888888887766542 222221 1 2235677888899999999999999877666653321111122344566
Q ss_pred EEEcCCeEEEEeCCCCCCCCCee-EEecCCC-CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC--
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDT-FLVGGDT-AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT-- 249 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~-~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-- 249 (338)
++..++.+..+|.++... ... ....... ..........++..++++..++.+..+|..+|+.+..+........
T Consensus 81 v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEETTSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccceeeeEecccCCcce--eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 667888899999776532 222 1111111 1112222333477888888899999999999988777766332211
Q ss_pred ------CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 250 ------NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 250 ------~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
...-.+..++ .++.++.++.+..+|+.+++.+- ....+.+..+ ..+.+..++.++ +.+..|.
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1112222344 77777777764444999988653 2223334432 235555555554 4555553
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.49 E-value=0.00057 Score=58.39 Aligned_cols=200 Identities=15% Similarity=0.183 Sum_probs=121.1
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEc-CCCCEEEEEECCCeEEEEECCCcceeeeeeec--C-----ccEEEEcC
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMS-PVNDSFMSGSLDHSVRIWDLRVNACQGILRLR--G-----RPTVAFDQ 167 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~-~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~--~-----~~~~~~~~ 167 (338)
.+.|..|+..+++... +.... ..++.+. +++ .++.+..++ +.++|+.+++........ . .+-+++++
T Consensus 21 ~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~ 95 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP 95 (246)
T ss_dssp TTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred CCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence 3677778877765433 22111 6677777 564 444445544 466699888654444431 1 12378899
Q ss_pred CCCEEEEEEcC--------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEE-EEecCCcEEEEEccCCee-
Q 019603 168 QGLVFAVAMEA--------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEK- 237 (338)
Q Consensus 168 ~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~-~~~~d~~i~i~~~~~~~~- 237 (338)
+|.+.++.... |.+..++.. .. . .... ..-...+.+.|+|+++.++ +-+..+.|+.++......
T Consensus 96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~-~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 96 DGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---V-TVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp TS-EEEEEECCBCTTCGGSEEEEEEETT-SE---E-EEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred CCCEEEEecCCCccccccccceEEECCC-Ce---E-EEEe-cCcccccceEECCcchheeecccccceeEEEeccccccc
Confidence 99977776543 345545533 11 1 1111 1133467899999998765 455677899988753221
Q ss_pred -E--EEe-eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEc-CCCceEEee
Q 019603 238 -R--CGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-PRRAMFVAA 307 (338)
Q Consensus 238 -~--~~~-~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~ 307 (338)
. ..+ ...........+++..+|.+.++.-..+.|.+++-+ ++.+..+.-....+++++|. |+...|...
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 1 112 222222235679999999988887788999999987 88888777666689999994 665555443
No 301
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.48 E-value=0.0014 Score=66.20 Aligned_cols=285 Identities=14% Similarity=0.175 Sum_probs=156.7
Q ss_pred CCcceeEEEeecCCCEEEEeeC----C--CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 26 FGGKINSLDFHRKDDLLVTASD----D--DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~----D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
+...-..++|-.||.|++..+- + +.+|+|+.+ |.+.-+......--..++|.+.+..+...-. . .+...
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~--~--~~~~~ 282 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR--L--PDRHD 282 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE--c--CCCcE
Confidence 5556678999999999988775 2 679999987 6543332222222335566655543332211 1 11222
Q ss_pred EEEEccCCeEEEee----cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc--eeeeeeecCc---cEEEEcCCC-
Q 019603 100 RYLSMYDNRILRYF----KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGR---PTVAFDQQG- 169 (338)
Q Consensus 100 ~~~~~~~~~~~~~~----~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~--~~~~~~~~~~---~~~~~~~~~- 169 (338)
-++.-.+|-....| ......|..+.|++++..||.--.|. |++|-..+-. ....+..... ..+.|+|..
T Consensus 283 VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 283 VVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 22222333222222 24566899999999999998876665 9999754321 1122222211 236677633
Q ss_pred CEEEEEEcCCeEEEEeC-------------------------------CCCCCC-CCeeEEecCCCCceEEEEEcCCCCE
Q 019603 170 LVFAVAMEAGAIKLFDS-------------------------------RSYDKG-PFDTFLVGGDTAEVCDIKFSNDGKS 217 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~-------------------------------~~~~~~-~~~~~~~~~~~~~i~~v~~sp~~~~ 217 (338)
..+.+.+..|.+..++. +....+ |+-.+.+ .-...|.+++|++++..
T Consensus 362 ~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~ 440 (928)
T PF04762_consen 362 LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSR 440 (928)
T ss_pred CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCe
Confidence 34555555454444332 111111 1111111 12456899999999988
Q ss_pred EEEEecCCcEEEEEccCCeeE--------EEeee--------CCCCCCCeeEEECCCCCEEEEEcCC---CcEEEEECCC
Q 019603 218 MLLTTTNNNIYVLDAYGGEKR--------CGFSL--------EPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINT 278 (338)
Q Consensus 218 i~~~~~d~~i~i~~~~~~~~~--------~~~~~--------~~~~~~~~~~~fs~~~~~l~sgs~D---g~i~vWd~~~ 278 (338)
+++-..++.+.+|........ ..+.. .........++|..++..++....+ ..+.++++..
T Consensus 441 ~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 441 FAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred EEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 999999999999985432211 01111 0112345667887777776665554 6788888843
Q ss_pred C---CeEeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 279 R---NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 279 ~---~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
. ..+.....-.+.+..+...++...++.-....+++.+.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~ 562 (928)
T PF04762_consen 521 SENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLS 562 (928)
T ss_pred CCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEee
Confidence 3 23333334456677677777665344433344444433
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=2.9e-05 Score=73.16 Aligned_cols=250 Identities=14% Similarity=0.178 Sum_probs=162.7
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCe--eEEec--CccC--CCCCceeE
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSS--VICST--KYNL--DSTGESLR 100 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~--~~~~~~i~ 100 (338)
...-.++.|+|.|- ++-|+ -..|.+-|..+-+.+.++..|...+..+.|.+.+.. ++... ..-+ ....+.|.
T Consensus 15 ~sN~~A~Dw~~~GL-iAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGL-IAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccce-EEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 34467889999774 44444 367888899988888888888888998888875432 11100 0011 11236789
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCC---C-CEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcC-CCCEEE
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPV---N-DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQ-QGLVFA 173 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~---~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~ 173 (338)
+||...+..+..+..|.++|..+.|-+. . ..++.-..-.+|-+|+..+|+.......... .++.++| +...+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 9999988888889999999999999763 3 3566556668999999988876433222222 2344555 444555
Q ss_pred EEEcCCeEEEEeCCCCC--CCCCeeEEecCC--------------------CCc------eEEEEEcCCCCEEEEEecCC
Q 019603 174 VAMEAGAIKLFDSRSYD--KGPFDTFLVGGD--------------------TAE------VCDIKFSNDGKSMLLTTTNN 225 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~--------------------~~~------i~~v~~sp~~~~i~~~~~d~ 225 (338)
.-+..|.+.+.+.-... ..+-..+.+... ... ...++|+|.-+.++.....+
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 55555666655422111 111111221111 000 11367899999999999999
Q ss_pred cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 226 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.+.++|++-........+++....+.++--.|+-..|+++..||.+.+|-.+.
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 99999988776666666665544555555555567899999999999998764
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.43 E-value=0.00074 Score=58.34 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=123.2
Q ss_pred eEEEEccCCeEEEeecCCccceEE--EEEcCCCCEEEEE-----ECCCeEEEEECCC-cceeeeeeecCc--cEEEEcCC
Q 019603 99 LRYLSMYDNRILRYFKGHKERVIS--LCMSPVNDSFMSG-----SLDHSVRIWDLRV-NACQGILRLRGR--PTVAFDQQ 168 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~--l~~~~~~~~l~Sg-----s~D~~I~iWd~~~-~~~~~~~~~~~~--~~~~~~~~ 168 (338)
..+||..+++..+.+..-.++-.. -.|+++|++|++. +..|.|-|||... -+.+..+..++. -.+.+.|+
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD 109 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD 109 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC
Confidence 455666666655444332222221 4799999998765 4458999999983 234444554443 23678899
Q ss_pred CCEEEEEEc-------CCeEEE-----------EeCCCCCCCCCeeEEe--cCCCCceEEEEEcCCCCEEEEEecCCc--
Q 019603 169 GLVFAVAME-------AGAIKL-----------FDSRSYDKGPFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTTNNN-- 226 (338)
Q Consensus 169 ~~~~~~~~~-------dg~i~i-----------~d~~~~~~~~~~~~~~--~~~~~~i~~v~~sp~~~~i~~~~~d~~-- 226 (338)
|..|+++.. .|..++ .|.++... +....+ ..+.-++..+++.++|..++..-..+.
T Consensus 110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l--l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 110 GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL--LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce--eeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 977766531 122222 22222110 111122 234557888888888875555444332
Q ss_pred -----EEEEEccCCeeEEEeeeC-----CCCCCCeeEEECCCCCEEEEEc-CCCcEEEEECCCCCeEeEeeCCCCceEEE
Q 019603 227 -----IYVLDAYGGEKRCGFSLE-----PSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGVVACL 295 (338)
Q Consensus 227 -----i~i~~~~~~~~~~~~~~~-----~~~~~~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l 295 (338)
+.++.. ++....+... .....+-++++++++.+++..| .-+.+.+||..+++.+....- ..+..|
T Consensus 188 ~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGv 263 (305)
T PF07433_consen 188 DAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGV 263 (305)
T ss_pred ccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cceeee
Confidence 333332 2222222221 2234577899999998876555 677899999999988876643 345678
Q ss_pred EEcCCCceEEeecceEEEeeeCCCCC
Q 019603 296 KWAPRRAMFVAASSVLSFWIPNPSSN 321 (338)
Q Consensus 296 ~~~p~~~~l~s~s~~~~iw~~~~~~~ 321 (338)
+-.+++ |+..|+...++...+...
T Consensus 264 a~~~~~--f~~ssG~G~~~~~~~~~~ 287 (305)
T PF07433_consen 264 APTDDG--FLVSSGQGQLIRLSPDGP 287 (305)
T ss_pred eecCCc--eEEeCCCccEEEccCccc
Confidence 877777 444455555555444433
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=0.00014 Score=61.05 Aligned_cols=199 Identities=12% Similarity=0.084 Sum_probs=107.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC----c--cE---EEEc-CC-----CCEEEEEEcCCeEEEEe
Q 019603 121 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----R--PT---VAFD-QQ-----GLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 121 ~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~----~--~~---~~~~-~~-----~~~~~~~~~dg~i~i~d 185 (338)
..++|+||+..||.+...|+|+++|+...++- .+.... . .. +.|- +. ...+++-.-+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 45899999999999999999999998654332 222110 0 00 1121 11 22444555556666554
Q ss_pred CCCCCCC---CCeeEEec-CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 186 SRSYDKG---PFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 186 ~~~~~~~---~~~~~~~~-~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
+...... ....+... .....|+++.|+|..++++++|....-.-......--...++.... +|..+.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------~Pyyk~ 196 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------SPYYKQ 196 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC---------CCcEEE
Confidence 3111111 11223332 2366799999999999888887643310000000000111221111 122222
Q ss_pred EEEEcCCCc------EEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCCCCCCCCCCCCc
Q 019603 262 VVSGSGDGT------LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTDPQ 330 (338)
Q Consensus 262 l~sgs~Dg~------i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~~~~~~~~~~~~ 330 (338)
+ +..+|+. --+|++-+.+..-........|..+..|||++.||+.. +.+.+|.+|.-.++.+=.++++
T Consensus 197 v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 197 V-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred c-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 1 2222221 23444433222212234578899999999999999985 7899999997777766555544
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.38 E-value=1e-05 Score=66.73 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=88.7
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE-EeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT-TYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
+|.-|.++-.+-+.+-.++-++++..|+.+.+.+.+.-..+.. +.....+....++-.+...+.......+ ..-+..+
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~-n~~d~~~ 162 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNW-NAQDNFY 162 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceE-eecccee
Confidence 3434444443334444567789999999999998765222111 1000001011111122222221111000 0112334
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCccee-eeeeecCcc--EEEEcC-CCCEEEEE
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQ-GILRLRGRP--TVAFDQ-QGLVFAVA 175 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~-~~~~~~~~~--~~~~~~-~~~~~~~~ 175 (338)
.|++...+....-+.--+.|++++-+|.. ..+++|+.||.+.+||.|..... ..+..+..+ .+-|+| ++..++++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 44443222211112223459999999975 46789999999999999876432 223333333 367887 45689999
Q ss_pred EcCCeEEEEeCC
Q 019603 176 MEAGAIKLFDSR 187 (338)
Q Consensus 176 ~~dg~i~i~d~~ 187 (338)
++||.+.-||..
T Consensus 243 sedGslw~wdas 254 (319)
T KOG4714|consen 243 SEDGSLWHWDAS 254 (319)
T ss_pred cCCCcEEEEcCC
Confidence 999999999854
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8.9e-06 Score=71.93 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=142.7
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeC-CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCC---eeEEecCccCCCCC
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASD-DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS---SVICSTKYNLDSTG 96 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 96 (338)
..|..|-+.|.+++.+.+|.++.|.+. |+.+|++|+++-..+..+....-+- ...|...+. ..+..+ ....
T Consensus 47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs----~~~s 121 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVS----LFKS 121 (558)
T ss_pred hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC-ceEEecCCCCeeeeEEee----cccC
Confidence 355678888899999999999999888 9999999998765432211111111 112222222 112111 1223
Q ss_pred ceeEEEEccCCe-E-EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEE
Q 019603 97 ESLRYLSMYDNR-I-LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAV 174 (338)
Q Consensus 97 ~~i~~~~~~~~~-~-~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
+.+.++|-.... . ...-+-|..+|..+.+.|.+..++|....|.|..|.... . ++... ..+-|.+....
T Consensus 122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~----~qfPr-~~l~~~~K~eT--- 192 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-P----FQFPR-TNLNFELKHET--- 192 (558)
T ss_pred CCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC-c----ccCcc-ccccccccccc---
Confidence 566777765432 2 222345999999999999999999999999999998642 1 11100 00111111100
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee-----------
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL----------- 243 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~----------- 243 (338)
.+|+. .-......++.|+|++..+..-+.|..|++++..+|+.+..+..
T Consensus 193 -------dLy~f-------------~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks 252 (558)
T KOG0882|consen 193 -------DLYGF-------------PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS 252 (558)
T ss_pred -------hhhcc-------------cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc
Confidence 01111 11234467788999999999999999999999887765432211
Q ss_pred -------------------CCC-CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe
Q 019603 244 -------------------EPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 244 -------------------~~~-~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~ 285 (338)
+.+ ...-+.+.|...|.+|+=|+-=| |+|.++.+..+++.+
T Consensus 253 ~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 253 PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 001 11224567888999988776543 899999988877765
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.32 E-value=0.0026 Score=58.42 Aligned_cols=231 Identities=18% Similarity=0.102 Sum_probs=129.6
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCcc
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKE 118 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~ 118 (338)
+..++.++.++.+..+|.++|+.+........ +...-. .....++.. ..++.+.-+|..+|+.+..+.....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~ssP~-v~~~~v~v~------~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-ALSRPV-VSDGLVLVH------TSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-eecCCE-EECCEEEEE------CCCCEEEEEEccCCCEeeeecCCCC
Confidence 44667778899999999999997765433221 110000 112233332 2236788889888888766543211
Q ss_pred ceE-EEEEcC--CCCEEEEEECCCeEEEEECCCcceeeeeeecCc---c------EEEEcC--CCCEEEEEEcCCeEEEE
Q 019603 119 RVI-SLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---P------TVAFDQ--QGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 119 ~V~-~l~~~~--~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~---~------~~~~~~--~~~~~~~~~~dg~i~i~ 184 (338)
... ...-+| .+..++.++.++.+...|..+++.......... . .+...| .+..+.+++.+|.+..+
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 000 000112 134566678899999999988876443322110 0 000111 23345566678888888
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEE
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 264 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~s 264 (338)
|.++.+. ........ ...+. ..+..+++++.++.++.+|..+|+..-........ ....... .+.+|+.
T Consensus 272 d~~tG~~--~W~~~~~~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v 340 (394)
T PRK11138 272 DLRSGQI--VWKREYGS----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-LLTAPVL--YNGYLVV 340 (394)
T ss_pred ECCCCCE--EEeecCCC----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-cccCCEE--ECCEEEE
Confidence 8765431 11111110 11111 14567778888999999999888654332211111 1111111 2567888
Q ss_pred EcCCCcEEEEECCCCCeEeEeeCC
Q 019603 265 GSGDGTLHAWNINTRNEVACWNGN 288 (338)
Q Consensus 265 gs~Dg~i~vWd~~~~~~~~~~~~h 288 (338)
++.||.|++.|..+++.+-..+-.
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcC
Confidence 999999999999999988777643
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.29 E-value=2.7e-05 Score=74.60 Aligned_cols=171 Identities=14% Similarity=0.146 Sum_probs=120.0
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEE--
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM-- 176 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 176 (338)
+-.+|+.+.+..+...--...|+= +-.+++++.+|..-|+|-+=|+++.+.++++..|......|+-+|+.+++++
T Consensus 159 li~~Dl~~~~e~r~~~v~a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S 236 (1118)
T KOG1275|consen 159 LIHIDLNTEKETRTTNVSASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYS 236 (1118)
T ss_pred eeeeecccceeeeeeeccCCceEE--EEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecc
Confidence 445566665555544333334443 3346789999999999999999999999999999999999999999887764
Q ss_pred -------cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC-CCEEEEEecCCcEEEEEccC-Cee-EEEeeeCCC
Q 019603 177 -------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYG-GEK-RCGFSLEPS 246 (338)
Q Consensus 177 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~-~~~-~~~~~~~~~ 246 (338)
-|..+++||+|++..-....+- ..-.-+.|.|. ...+++++..|...+.|..+ ++. ...+-....
T Consensus 237 ~R~~~l~~D~FvkVYDLRmmral~PI~~~-----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~ 311 (1118)
T KOG1275|consen 237 MRRYNLAMDPFVKVYDLRMMRALSPIQFP-----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN 311 (1118)
T ss_pred cccccccccchhhhhhhhhhhccCCcccc-----cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC
Confidence 4677899999987542221111 11133567775 34677888888888888322 111 222333333
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
...+...++|++++.++-|..+|.|.+|--
T Consensus 312 ~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 312 GSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCcceeEEecCCCceEEEecccCcEeeecC
Confidence 345888999999999999999999999983
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.27 E-value=0.00032 Score=59.02 Aligned_cols=199 Identities=13% Similarity=0.165 Sum_probs=97.5
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecc-------cCeeeEEEeecC-----C-eeEEecCccCCCCCc
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKK-------HGADCVCFTHHP-----S-SVICSTKYNLDSTGE 97 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~ 97 (338)
.-++||||+.+||.+.+-|+|+++|+....+ ..+.... .++..+.|.... . .+++.. + .+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-Y-----~G 119 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-Y-----RG 119 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEe-c-----cc
Confidence 5689999999999999999999999985433 2332211 112222222111 0 011110 0 13
Q ss_pred eeEEEEccC--C---eEE--Eeec-CCccceEEEEEcCCCCEEEEEEC-CCeEEEEECCCcceeeeeee-cCccE--EEE
Q 019603 98 SLRYLSMYD--N---RIL--RYFK-GHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRL-RGRPT--VAF 165 (338)
Q Consensus 98 ~i~~~~~~~--~---~~~--~~~~-~H~~~V~~l~~~~~~~~l~Sgs~-D~~I~iWd~~~~~~~~~~~~-~~~~~--~~~ 165 (338)
.++-+.+.. . +.. ..+. .+...|.++.++|.-+.|+.||. ...-..+... ..-+..++. .+.+- ...
T Consensus 120 ~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~-~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 120 QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKAS-SCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred eeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccccc-ccCceEEEEcCCCCcEEEcc
Confidence 334343321 1 111 1222 35789999999999887665553 3321111000 000111110 11110 000
Q ss_pred cCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 166 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
......-......+..++..++.+. ........|..|..||||..+++...+|.+.+|++-.-.....+...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs-------~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFS-------RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccCccccccccccceeeccceeeee-------ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1001111111112222222211110 00223556889999999999999999999999998665555444443
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00012 Score=69.47 Aligned_cols=183 Identities=12% Similarity=0.156 Sum_probs=123.0
Q ss_pred ccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCee
Q 019603 117 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 196 (338)
Q Consensus 117 ~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 196 (338)
.+.+++.+++ ++.|+-|+.+|.|++.+..-.- .+...+... +.+|..+++++.||++.|..+-+.+. ...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~--~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE--ITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc--cee
Confidence 4556666665 5789999999999999864321 112222111 66789999999999999876544322 111
Q ss_pred EEecCCCCceEEEEEcCC-----CCEEEEEecCCcEEEEEcc-CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc
Q 019603 197 FLVGGDTAEVCDIKFSND-----GKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270 (338)
Q Consensus 197 ~~~~~~~~~i~~v~~sp~-----~~~i~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~ 270 (338)
+ .-...+..++++|+ .+++++|+..| +.++... -|++.. ..++...+.+.++.|. |.++|=++.+|
T Consensus 109 ~---df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~~~eG~I~~i~W~--g~lIAWand~G- 180 (846)
T KOG2066|consen 109 Y---DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLSEGEGPIHSIKWR--GNLIAWANDDG- 180 (846)
T ss_pred E---ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeeecCccceEEEEec--CcEEEEecCCC-
Confidence 1 12456788899998 46788888777 6665422 122211 2344455678888874 78888887766
Q ss_pred EEEEECCCCCeEeEeeCCCCce------EEEEEcCCCceEEeecceEEEeeeC
Q 019603 271 LHAWNINTRNEVACWNGNIGVV------ACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 271 i~vWd~~~~~~~~~~~~h~~~v------~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
|+|+|..+++.+..++.....+ ..+.|.++.+.++-.+.+++|..+.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 8999999988777665333333 4589999999888888888887655
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.21 E-value=0.0028 Score=54.80 Aligned_cols=226 Identities=16% Similarity=0.191 Sum_probs=127.4
Q ss_pred EEEeec-CCCEEEEeeCCCc-EEEEEcCCCeeEeEEeecc--cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc-C
Q 019603 32 SLDFHR-KDDLLVTASDDDS-VRLYDIVSAKLIKTTYHKK--HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY-D 106 (338)
Q Consensus 32 ~l~~s~-~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 106 (338)
+++.+| .+..++-+-.-|+ ..+||..+++.+..+.... +-.-..+|+.++..++..- .....+.+.|.+||.. +
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTE-nd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTE-NDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEec-cccCCCcEEEEEEECcCC
Confidence 456688 4556666777666 6788999988766543321 1122346777776665443 2345566789999998 6
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEE--E----------------CCCeEEEEECCCcceeeeeee----cC--ccE
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSG--S----------------LDHSVRIWDLRVNACQGILRL----RG--RPT 162 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sg--s----------------~D~~I~iWd~~~~~~~~~~~~----~~--~~~ 162 (338)
.+.+..+..|--.-..+.+.|+++.|+.+ + .+-.+-+-|.++++.+....+ +. ..-
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 67788888776666677888998766543 1 112233334455555444333 11 112
Q ss_pred EEEcCCCCEEEEEEcCC-------eEEEEeCCCCCCCCCeeEEe-----cCCCCceEEEEEcCCCCEEEEEe-cCCcEEE
Q 019603 163 VAFDQQGLVFAVAMEAG-------AIKLFDSRSYDKGPFDTFLV-----GGDTAEVCDIKFSNDGKSMLLTT-TNNNIYV 229 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg-------~i~i~d~~~~~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i 229 (338)
++++.+|.++...=-.| -+-+++... .+..+.. ..-...+-+|++++++.++++++ ..+.+.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~----~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG----ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC----cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 55666665443321111 011111000 0000000 01235578899999998876555 5778999
Q ss_pred EEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 230 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
||..+++.+....+. .+-.++-.+++ +++|.+.
T Consensus 244 ~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 244 WDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EECCCCCEeeccccC----ceeeeeecCCc-eEEeCCC
Confidence 999998776543332 23334455555 6666544
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=0.0003 Score=64.82 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=60.1
Q ss_pred CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 019603 115 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSRS 188 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 188 (338)
..+..|.+++++|+.+.++.|..||+|.+||...+....+ +..-. ..++|+|+|.++++|+..|.+++||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4778999999999999999999999999999877643222 22222 3489999999999999999999999753
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00066 Score=65.04 Aligned_cols=189 Identities=14% Similarity=0.219 Sum_probs=118.4
Q ss_pred EEEEccCCeE-EEeecCCccc-eEEEEEcCCCCEEEEEECCCe-----EEEEECCCc------cee---eeee--ec---
Q 019603 100 RYLSMYDNRI-LRYFKGHKER-VISLCMSPVNDSFMSGSLDHS-----VRIWDLRVN------ACQ---GILR--LR--- 158 (338)
Q Consensus 100 ~~~~~~~~~~-~~~~~~H~~~-V~~l~~~~~~~~l~Sgs~D~~-----I~iWd~~~~------~~~---~~~~--~~--- 158 (338)
++|-+.+.-. ++.+++|... |.-+-......+|+|-+.|+. ++|||+... +|. ..+. ..
T Consensus 46 ~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~ 125 (933)
T KOG2114|consen 46 RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNP 125 (933)
T ss_pred cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCC
Confidence 4555544433 3778888777 544444434468899888865 899998532 343 1222 11
Q ss_pred -CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee
Q 019603 159 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 159 -~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
..++++++.+-..+++|-.+|.|..+...-................+|+.+.+..+++..+.+.....|..|.+. |+.
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~ 204 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRT 204 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCC
Confidence 123467788888899999999998885321111111111222345689999999888876667777788888876 433
Q ss_pred EEEee-eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee-CCCCc
Q 019603 238 RCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGV 291 (338)
Q Consensus 238 ~~~~~-~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~ 291 (338)
.... ...+-....+.+|++....+++++. ..+++|+....++-..|. +|...
T Consensus 205 -p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 205 -PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred -cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEE
Confidence 2222 3333346777888877665666653 479999998776666776 66543
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=2e-06 Score=81.85 Aligned_cols=188 Identities=16% Similarity=0.226 Sum_probs=128.6
Q ss_pred EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEE--cCCCCEEEEEEc-C-CeEEEE
Q 019603 109 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF--DQQGLVFAVAME-A-GAIKLF 184 (338)
Q Consensus 109 ~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-d-g~i~i~ 184 (338)
..+.|+.|+..-++++|+.+.+.|+.|+.-|.|+++++.+|........|+....-+ +.+|..+++.+. . --..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 345678899999999999999999999999999999999887655555555433223 336665443332 2 245688
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe-eeC-CCCCCCeeEEECCCCCEE
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLE-PSPNTNTEATFTPDGQYV 262 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~-~~~-~~~~~~~~~~fs~~~~~l 262 (338)
++.. ...+... -.+-.++.|+.....-+.++..+...+||..++.....+ ... ........+.|||+..++
T Consensus 1173 ~~~s-~~~~~Hs------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1173 DASS-TGGPRHS------FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred cccc-ccCcccc------ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 8754 1111111 123557889887666677777788999999988765442 111 112234668899999988
Q ss_pred EEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 263 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
+- || -+||++..+.++.|......+. =.|||.|..++.-+.
T Consensus 1246 ln---dG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1246 LN---DG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE 1286 (1516)
T ss_pred ee---Cc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech
Confidence 74 44 4899998888888876553332 459999998887664
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00075 Score=64.69 Aligned_cols=191 Identities=17% Similarity=0.211 Sum_probs=120.1
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEE--EcCCC-CEEEEEEcC-C----eEEEEeCCCCCC-C-C
Q 019603 124 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVA--FDQQG-LVFAVAMEA-G----AIKLFDSRSYDK-G-P 193 (338)
Q Consensus 124 ~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~d-g----~i~i~d~~~~~~-~-~ 193 (338)
.|++.+..+|-|+.||.|-+.+-. -+.+.-++......+. +.-++ ..+++...| + .+++|++...+. . |
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 467788899999999988877632 2222344443332221 12222 344444433 3 689999865321 1 2
Q ss_pred Cee--EEe-----cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc----CCeeEEEeeeCCCCCCCeeEEECCCCCEE
Q 019603 194 FDT--FLV-----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY----GGEKRCGFSLEPSPNTNTEATFTPDGQYV 262 (338)
Q Consensus 194 ~~~--~~~-----~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~----~~~~~~~~~~~~~~~~~~~~~fs~~~~~l 262 (338)
.-. +.+ .....+++.+..+.+-+.++.|-.+|.|..+.-. .|. ...+. +....+|+.++|-.+++.+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~-~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYS-HRGKEPITGLALRSDGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeee-ccCCCCceeeEEecCCcee
Confidence 111 111 1235678889999998899999999999988522 111 11122 2334689999999998873
Q ss_pred EEEcCCCcEEEEECCCCC-eEeEeeCCCCceEEEEEcCCCc-eEEeecceEEEeeeC
Q 019603 263 VSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRA-MFVAASSVLSFWIPN 317 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~-~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~~~~iw~~~ 317 (338)
+-...-..|.+|.+..+. ....+..|..+++|-.|++..+ +++++++-+.++..+
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD 243 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence 333345579999998444 3556889999999999999877 555555556666544
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0002 Score=62.77 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=71.8
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCC-EEEEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGL-VFAVA 175 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~ 175 (338)
++.++..+-+..+.+.+|...|.+++|+|.++ .+..++.+.+|+|.|+++..+......+. .-+.+|+.+.. ++.+|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 55555555555667788999999999999887 78899999999999999887766655542 23467887664 67789
Q ss_pred EcCCeEEEEeCCCC
Q 019603 176 MEAGAIKLFDSRSY 189 (338)
Q Consensus 176 ~~dg~i~i~d~~~~ 189 (338)
...|.|.+||+|..
T Consensus 255 l~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQP 268 (463)
T ss_pred ccCceEEEEEccCC
Confidence 99999999999863
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.05 E-value=0.00035 Score=64.36 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=57.0
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
..+..+.+++++|+...|+.|..||+|.+||...+ +..+..+.=..+.++|||+|.++++|+ +.+.+|+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34567899999999999999999999999999865 333333444567899999999999998 467788654
No 318
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.04 E-value=1.1e-05 Score=46.27 Aligned_cols=38 Identities=26% Similarity=0.542 Sum_probs=34.6
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEE
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYD 55 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd 55 (338)
+++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
No 319
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.03 E-value=1.8e-05 Score=45.22 Aligned_cols=38 Identities=34% Similarity=0.645 Sum_probs=34.1
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEE
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 145 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd 145 (338)
+++..+..|...|.++.|.+.++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778999999999999999999999999999996
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.98 E-value=0.0022 Score=63.79 Aligned_cols=231 Identities=10% Similarity=0.157 Sum_probs=131.0
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
.+.|.++.|.-++..++.+..+|.|.+-|.++..... ......++.+.+|+++...+...+. .+++-+. ..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~------~~tll~m-T~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITG------RQTLLFM-TKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeC------CcEEEEE-ecc
Confidence 4689999999999988889999999999998765422 2233467888889888766554332 1222221 111
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-----c------eeeee-eecCccEEEEcCCCCEEEE
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-----A------CQGIL-RLRGRPTVAFDQQGLVFAV 174 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-----~------~~~~~-~~~~~~~~~~~~~~~~~~~ 174 (338)
-.++....-|.+ -.+ ...++++|+.+.=.-+--..+ + ....+ .......+.|-.+|.++++
T Consensus 140 f~~i~E~~L~~d------~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAV 212 (1265)
T KOG1920|consen 140 FEPIAEKPLDAD------DER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAV 212 (1265)
T ss_pred ccchhccccccc------ccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEE
Confidence 111111110100 000 113344444442222211111 0 00001 1123456899999998887
Q ss_pred E-----EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec---CCcEEEEEccCCeeEEEeeeC--
Q 019603 175 A-----MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLE-- 244 (338)
Q Consensus 175 ~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~---d~~i~i~~~~~~~~~~~~~~~-- 244 (338)
. ...+++++||-. +. ++. ......+.-.++.|-|.|..+++... ++.|.+|..++- ....|.+.
T Consensus 213 s~~~~~~~~RkirV~drE-g~---Lns-~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL-~hg~f~l~~p 286 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-GA---LNS-TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL-RHGEFVLPFP 286 (1265)
T ss_pred EEEeccCCceeEEEeccc-ch---hhc-ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc-cccccccCCc
Confidence 3 333899999954 11 100 00111233456889999999887653 567888875432 12222222
Q ss_pred CCCCCCeeEEECCCCCEEEE---EcCCCcEEEEECCC
Q 019603 245 PSPNTNTEATFTPDGQYVVS---GSGDGTLHAWNINT 278 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~s---gs~Dg~i~vWd~~~ 278 (338)
.....+..++|+.++..||. ..+...|++|-..+
T Consensus 287 ~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 12234889999999999988 55666699998865
No 321
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.96 E-value=2.7e-05 Score=64.31 Aligned_cols=106 Identities=13% Similarity=0.258 Sum_probs=74.8
Q ss_pred CCCEEEEeeC-----CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe-EEE
Q 019603 38 KDDLLVTASD-----DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR-ILR 111 (338)
Q Consensus 38 ~~~~l~s~s~-----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~ 111 (338)
.++.+.+++. -+..++|++...+.+.........+.+++-.+++..+++.. +.++.+.+||.+... +..
T Consensus 143 ~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cg-----t~dg~~~l~d~rn~~~p~S 217 (319)
T KOG4714|consen 143 HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCG-----TDDGIVGLWDARNVAMPVS 217 (319)
T ss_pred cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEe-----cCCCeEEEEEcccccchHH
Confidence 3455555442 24467777765544333233334577777777777776543 456889999998753 456
Q ss_pred eecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCC
Q 019603 112 YFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRV 148 (338)
Q Consensus 112 ~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~ 148 (338)
.++.|+.+++.+.|+|.+ ..|.+++.||.+..||..+
T Consensus 218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 679999999999999964 5899999999999999753
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.96 E-value=0.0058 Score=56.14 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=118.3
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeee---EEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecC
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADC---VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKG 115 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 115 (338)
+..++.+..|+.+..+|.++|+.+............ ..-......++.. ..++.+..++..+++.+....-
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~------~~~g~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVG------GDNGRVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEE------cCCCEEEEEEccCChhhheecc
Confidence 345666778899999999999987665432110000 0000011222222 2235666777777765443321
Q ss_pred Cc-------cceEEEEEcC--CCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeC
Q 019603 116 HK-------ERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 116 H~-------~~V~~l~~~~--~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 186 (338)
.. .....+.-+| .+..++.++.++.+...|+++++..-........... ..+..+.++..+|.+..+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 234 SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred ccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEEC
Confidence 00 0011111222 2456777888999999999988765433322211111 13445566667788888886
Q ss_pred CCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEc
Q 019603 187 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs 266 (338)
++... ......... ........ .+.++++++.++.++.+|..+|+....+...... ....-.+ .+..|+.++
T Consensus 312 ~tG~~--~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~-~~s~P~~--~~~~l~v~t 383 (394)
T PRK11138 312 RGGVE--LWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSG-FLSEPVV--ADDKLLIQA 383 (394)
T ss_pred CCCcE--EEcccccCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-ceeCCEE--ECCEEEEEe
Confidence 55321 000000000 00111111 2556888889999999999999877655542211 1111112 245788889
Q ss_pred CCCcEEEEEC
Q 019603 267 GDGTLHAWNI 276 (338)
Q Consensus 267 ~Dg~i~vWd~ 276 (338)
.||.|+.++.
T Consensus 384 ~~G~l~~~~~ 393 (394)
T PRK11138 384 RDGTVYAITR 393 (394)
T ss_pred CCceEEEEeC
Confidence 9999988764
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=9e-05 Score=63.67 Aligned_cols=144 Identities=14% Similarity=0.191 Sum_probs=94.3
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-----ceeeeeeecC-ccEEEE-cCCCC
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-----ACQGILRLRG-RPTVAF-DQQGL 170 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-----~~~~~~~~~~-~~~~~~-~~~~~ 170 (338)
.+.+.++.++- .+.|. -+.-|.++.|...++.+..|...|.|-..|+|.+ .+...+...+ ..++.. ..++.
T Consensus 235 qv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q 312 (425)
T KOG2695|consen 235 QVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQ 312 (425)
T ss_pred eeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccc
Confidence 45555555542 22233 5667889999988899999999999999999865 2332333222 122222 22566
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCc--eEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
.+.+..-+|+|++||.|.-++.. ......||... -..+-..|....+++++.|-..+||.+..|+.++.....
T Consensus 313 ~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 313 KLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 77788889999999999765532 12223344322 223345666777888888889999999999887765443
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.0011 Score=63.52 Aligned_cols=272 Identities=16% Similarity=0.196 Sum_probs=148.8
Q ss_pred CcceeEEEeecCCCEEEEeeC----CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 27 GGKINSLDFHRKDDLLVTASD----DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
.+.-+-..|+|...+++.++- -|++-|| .++|...+- ...++...++-+||...+.+.++. -+.+.+|
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~---Vt~P~hatSLCWHpe~~vLa~gwe----~g~~~v~ 86 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRD---VTYPVHATSLCWHPEEFVLAQGWE----MGVSDVQ 86 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcc---cccceehhhhccChHHHHHhhccc----cceeEEE
Confidence 333344679999998888773 5888888 344543221 122333333444565555444432 2567888
Q ss_pred EccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC-ccee---------------eeeeecCc------
Q 019603 103 SMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQ---------------GILRLRGR------ 160 (338)
Q Consensus 103 ~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-~~~~---------------~~~~~~~~------ 160 (338)
...+.+.-..-..|+.+|..+.|+++|..++|+..=|.+.+|-... ++.. ..+++...
T Consensus 87 ~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~ 166 (1416)
T KOG3617|consen 87 KTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFK 166 (1416)
T ss_pred ecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhh
Confidence 8877776666677999999999999999999999999999996431 1110 01111100
Q ss_pred --------------------cE-------EEEcCCCCEEEEEEcCCeEEEEeCCCCCC-----CCCeeEEecCCCCceEE
Q 019603 161 --------------------PT-------VAFDQQGLVFAVAMEAGAIKLFDSRSYDK-----GPFDTFLVGGDTAEVCD 208 (338)
Q Consensus 161 --------------------~~-------~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~i~~ 208 (338)
+. -+-.|+|..+..+..+|+|...|-+.... .....++..+....|.+
T Consensus 167 laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~ 246 (1416)
T KOG3617|consen 167 LAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISI 246 (1416)
T ss_pred hhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEE
Confidence 00 01135678888888889888877432100 00000011111111111
Q ss_pred E--------EE-cCCCCE---------EEEEecCCcEEEEEccCCe--eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC
Q 019603 209 I--------KF-SNDGKS---------MLLTTTNNNIYVLDAYGGE--KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 209 v--------~~-sp~~~~---------i~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D 268 (338)
+ -| .|.|.. --.|+..|.|..=.. .|- +...|.+ .....+++++++..+..|..|...
T Consensus 247 i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-sGvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~ 324 (1416)
T KOG3617|consen 247 IIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-SGVLRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKE 324 (1416)
T ss_pred EeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-cccccCCcchhh-hcCCceEEEEEeccceEEEecccC
Confidence 1 00 111100 000111111111100 000 0001111 112457899999999999999999
Q ss_pred CcEEEEECCCC-------CeEeEee---CCCCceEEEEEcCCCceEEeec
Q 019603 269 GTLHAWNINTR-------NEVACWN---GNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 269 g~i~vWd~~~~-------~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s 308 (338)
|.+.+|.-... +-+-.+. ...+.|..+.|.|..+.++.-+
T Consensus 325 gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 325 GNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred CcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 99999975421 1222333 3458899999999877666654
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.87 E-value=0.002 Score=60.97 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=116.1
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCC----eEEEEECCCcceeeeeeecCccEEEEcCCCCEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDH----SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFA 173 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
.+..+|..+.+...++.-- +.-..+.++++++++++.+.+. ++..=+..... ..+.+.-.....+.++|....
T Consensus 216 ~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 216 LFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred EEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEchHHHHHhhhCCCEEE
Confidence 3445555555554443211 1224567888888877665321 22222211111 111111111112334666544
Q ss_pred EEEcCCeEEEEeCCCCCC--CCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccCCeeEE----------E
Q 019603 174 VAMEAGAIKLFDSRSYDK--GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRC----------G 240 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~~~----------~ 240 (338)
+ .++.+.++|.++..+ ........ .....-.+.++|||+++++++. ++++.++|....+... .
T Consensus 293 V--~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 293 I--GGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred E--CCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 4 367899999875111 11212221 2233556789999999887765 7899999987643210 0
Q ss_pred eeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC----------CCeEeEee-----CCCCceEEEEEcCCCceEE
Q 019603 241 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT----------RNEVACWN-----GNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 241 ~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~----------~~~~~~~~-----~h~~~v~~l~~~p~~~~l~ 305 (338)
-+.+- -......+|.++|....|---|..|-.||+.+ ...+..+. +|.....+=.-.|+|++|+
T Consensus 369 aevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~ 447 (635)
T PRK02888 369 AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLV 447 (635)
T ss_pred Eeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEE
Confidence 01111 12234678999998888888899999999976 23344343 3322222223358888888
Q ss_pred eecc--eEEEeeeCCCCCCCCCC
Q 019603 306 AASS--VLSFWIPNPSSNSTDES 326 (338)
Q Consensus 306 s~s~--~~~iw~~~~~~~~~~~~ 326 (338)
+... .-++.-.-|..++.++.
T Consensus 448 ~~nk~skdrfl~vgpl~pen~ql 470 (635)
T PRK02888 448 SLNKFSKDRFLPVGPLHPENDQL 470 (635)
T ss_pred EccccccccccCCCCCCCCccee
Confidence 8752 23333333444444443
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.87 E-value=0.026 Score=53.42 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=136.9
Q ss_pred CEEEEeeCCCcEEEEEcCCCeeEeEEeecccC-----eeeEEEeecCCeeEEecCcc-C--CCCCceeEEEEccCCeEEE
Q 019603 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG-----ADCVCFTHHPSSVICSTKYN-L--DSTGESLRYLSMYDNRILR 111 (338)
Q Consensus 40 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~~~~~~~~~~~~ 111 (338)
..++.++.|+.|..+|.++|+.+......... +.. .-......++..+... . ....+.+..+|..+|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~s-sP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTG-APTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecC-CCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 67777888999999999999987654332211 000 0001112222221100 0 0123567888888888776
Q ss_pred eecCCcc--------------------ceE-EEEEcCCCCEEEEEECCC------------------eEEEEECCCccee
Q 019603 112 YFKGHKE--------------------RVI-SLCMSPVNDSFMSGSLDH------------------SVRIWDLRVNACQ 152 (338)
Q Consensus 112 ~~~~H~~--------------------~V~-~l~~~~~~~~l~Sgs~D~------------------~I~iWd~~~~~~~ 152 (338)
.+..... .|. +.++.+.+..++.++.++ .|.-.|+++++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 6543211 111 234444556666676554 7999999999876
Q ss_pred eeeeecCc----------cEEE-E-cCCCC---EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCE
Q 019603 153 GILRLRGR----------PTVA-F-DQQGL---VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 217 (338)
Q Consensus 153 ~~~~~~~~----------~~~~-~-~~~~~---~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 217 (338)
-.++.... +.+. . ..++. .++++..+|.+..+|.++.+. ....... ...+..+| ..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~--~W~~~~~-----~~~~~~~~--~~ 340 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL--ISARPEV-----EQPMAYDP--GL 340 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE--eeEeEee-----ccccccCC--ce
Confidence 55443211 1111 1 12333 566777889999999876542 1111110 01122333 22
Q ss_pred EEEE------------------ecCCcEEEEEccCCeeEEEeeeCCCC------CCCeeEEECCCCCEEEEEcCCCcEEE
Q 019603 218 MLLT------------------TTNNNIYVLDAYGGEKRCGFSLEPSP------NTNTEATFTPDGQYVVSGSGDGTLHA 273 (338)
Q Consensus 218 i~~~------------------~~d~~i~i~~~~~~~~~~~~~~~~~~------~~~~~~~fs~~~~~l~sgs~Dg~i~v 273 (338)
+.+. ..++.+.-+|..+|+.+-........ .....-.....+..|+.++.||.|+.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 2221 13467778888888766554433110 00100011124678889999999999
Q ss_pred EECCCCCeEeEeeCCCCceEE--EEEcCCCceE
Q 019603 274 WNINTRNEVACWNGNIGVVAC--LKWAPRRAMF 304 (338)
Q Consensus 274 Wd~~~~~~~~~~~~h~~~v~~--l~~~p~~~~l 304 (338)
+|..+++.+-.++-. +.+.+ +.|..++++.
T Consensus 421 ld~~tG~~lW~~~~~-~~~~a~P~~~~~~g~~y 452 (488)
T cd00216 421 FDATTGKELWKFRTP-SGIQATPMTYEVNGKQY 452 (488)
T ss_pred EECCCCceeeEEECC-CCceEcCEEEEeCCEEE
Confidence 999999988777642 33322 4444455533
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.85 E-value=0.02 Score=51.77 Aligned_cols=259 Identities=16% Similarity=0.201 Sum_probs=123.5
Q ss_pred ecCCCEEEEe---------eCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 36 HRKDDLLVTA---------SDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 36 s~~~~~l~s~---------s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
|||+++++.. +..+.+-+||+++++....... ........+++++..++.... +.+.+.+..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~-------~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD-------NNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET-------TEEEEESSTT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec-------CceEEEECCC
Confidence 5778876663 2246788999998865432222 345666788888777665432 5566666655
Q ss_pred CeEEEee-cC-------C---------ccceEEEEEcCCCCEEEEEEC-CCeEEEEECC---Cc-c---eeeeee-----
Q 019603 107 NRILRYF-KG-------H---------KERVISLCMSPVNDSFMSGSL-DHSVRIWDLR---VN-A---CQGILR----- 156 (338)
Q Consensus 107 ~~~~~~~-~~-------H---------~~~V~~l~~~~~~~~l~Sgs~-D~~I~iWd~~---~~-~---~~~~~~----- 156 (338)
+...+.. .| - -+.-..+-|+|++++|+..-. +..|+.+.+- .. . ....++
T Consensus 73 ~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 73 GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 5443321 12 0 112245679999998875543 3444444321 11 0 011110
Q ss_pred ------------ecCc------------------cEEEEcCCCCEEEEEE--cC---CeEEEEeCCCCCCCCCeeEEecC
Q 019603 157 ------------LRGR------------------PTVAFDQQGLVFAVAM--EA---GAIKLFDSRSYDKGPFDTFLVGG 201 (338)
Q Consensus 157 ------------~~~~------------------~~~~~~~~~~~~~~~~--~d---g~i~i~d~~~~~~~~~~~~~~~~ 201 (338)
..+. ..+.|.+++..++... .+ ..+.++|..+.... ......
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~---~~~~e~ 229 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETR---VVLEET 229 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCE---EEEEEE
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCcee---EEEEec
Confidence 0000 1134445554222221 11 12333444432221 111111
Q ss_pred CCCce---EEEEEc-CCCCEEE-EEecCCc--EEEEEccCCeeEEEeeeCCCCCCCee-EEECCCCCEEE-EEcCCC---
Q 019603 202 DTAEV---CDIKFS-NDGKSML-LTTTNNN--IYVLDAYGGEKRCGFSLEPSPNTNTE-ATFTPDGQYVV-SGSGDG--- 269 (338)
Q Consensus 202 ~~~~i---~~v~~s-p~~~~i~-~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~l~-sgs~Dg--- 269 (338)
....+ ....|. +++..++ ....+|- +++++..++... .+....-.|+. +.++++++.|+ ++..+.
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~ 306 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGE 306 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTS
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCc
Confidence 11111 133443 6665544 4445554 556666655533 22333334433 67888876543 555433
Q ss_pred -cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 270 -TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 270 -~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.|+.-++..+..+..+....+....+.|||++++++-..
T Consensus 307 r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 307 RHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp BEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 566666663455667765555447899999999887643
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.81 E-value=0.0097 Score=54.29 Aligned_cols=262 Identities=13% Similarity=0.142 Sum_probs=132.1
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEe-EEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC-
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIK-TTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD- 106 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 106 (338)
.|+.+.|.++..-|+.|-..|-|.||.+...+.-. .............+.+.. ..-++.|+.+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~di~~r 67 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNN---------------SPGKLTDISDR 67 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGG---------------SS-SEEE-GGG
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccC---------------CCcceEEehhh
Confidence 58899999998899999999999999875332111 000000000000011100 0112222221
Q ss_pred -------C-eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC----------ccEEEE---
Q 019603 107 -------N-RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----------RPTVAF--- 165 (338)
Q Consensus 107 -------~-~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~----------~~~~~~--- 165 (338)
+ .+...+...+++|++++.+ +-.+++.|..+|.+.|-|+|....+....... ...+.|
T Consensus 68 ~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 68 APPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp --TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred CCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE
Confidence 0 1334455668999999997 45699999999999999998776543322221 012222
Q ss_pred --cCCC---CEEEEEEcCCeEEEEeCCCCCCCCCeeEE---ecCCCCceEEEE-EcCC--------------------CC
Q 019603 166 --DQQG---LVFAVAMEAGAIKLFDSRSYDKGPFDTFL---VGGDTAEVCDIK-FSND--------------------GK 216 (338)
Q Consensus 166 --~~~~---~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~i~~v~-~sp~--------------------~~ 216 (338)
..++ ..+++|++.|.+.+|.+--...+.+.... ...+...+..+. ++.+ -.
T Consensus 147 ~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~ 226 (395)
T PF08596_consen 147 TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP 226 (395)
T ss_dssp E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----
T ss_pred ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC
Confidence 3444 57889999999999976421111111110 012223333222 2211 12
Q ss_pred EEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE-----CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC---
Q 019603 217 SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF-----TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN--- 288 (338)
Q Consensus 217 ~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f-----s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h--- 288 (338)
.+++...+..++++...+.+..... .........+++ ...+..|++--.||.|+++.+-.-+.+..++-.
T Consensus 227 g~vVvvSe~~irv~~~~~~k~~~K~--~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 227 GYVVVVSESDIRVFKPPKSKGAHKS--FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred cEEEEEcccceEEEeCCCCccccee--eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 3555666788999887654432211 111112223444 235667888899999999999988887776643
Q ss_pred -CCceEEEEEcCCCceEEeec
Q 019603 289 -IGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 289 -~~~v~~l~~~p~~~~l~s~s 308 (338)
...+....+.++|..++-.+
T Consensus 305 d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-S
T ss_pred ccccccccEECCCCCEEEEeC
Confidence 23456677899999887776
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0014 Score=57.74 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=73.1
Q ss_pred cccceeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
|+....+.+|+..|..++|+|... ++..++-+++|+|.|+++.....++..+ ..+...+|..+....+.+.. .
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl-----~ 256 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL-----Q 256 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec-----c
Confidence 444557789999999999999877 7888999999999999998887776665 66777788766655554432 1
Q ss_pred CceeEEEEccCCe-EEEeecC--CccceEEEEE
Q 019603 96 GESLRYLSMYDNR-ILRYFKG--HKERVISLCM 125 (338)
Q Consensus 96 ~~~i~~~~~~~~~-~~~~~~~--H~~~V~~l~~ 125 (338)
-+.+.++|++..+ ....+.+ -..+|..++.
T Consensus 257 nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 257 NGMVLVYDMRQPEGPLMELVANVTINPVHKIAP 289 (463)
T ss_pred CceEEEEEccCCCchHhhhhhhhccCcceeecc
Confidence 2689999997643 2222322 2345555443
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.76 E-value=0.0086 Score=58.74 Aligned_cols=207 Identities=19% Similarity=0.277 Sum_probs=123.4
Q ss_pred CceeEEEEccCCeEEEeecCCccc-eEEEEEcC-----CCCEEEEEECCCeEEEEECCCcc--eeee-eee--cCc--cE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKER-VISLCMSP-----VNDSFMSGSLDHSVRIWDLRVNA--CQGI-LRL--RGR--PT 162 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~-V~~l~~~~-----~~~~l~Sgs~D~~I~iWd~~~~~--~~~~-~~~--~~~--~~ 162 (338)
.+.++..|+..|+.+..++.|.+. |..++-.. .......|=.+..+..||.|... +... .+. ... .+
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 467999999999999999988765 66543221 13346678888999999998643 2110 000 111 23
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc--CC----e
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY--GG----E 236 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~--~~----~ 236 (338)
++-+.+| .+|+|+.+|.||+||- .... ....+.+-..+|..|..+.||+++++.+ +..+.+++.. .| .
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~-~g~~---AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~~~g~~~g~ 656 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDR-LGKR---AKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTLIKDGKNSGK 656 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecc-cchh---hhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEeeecCCccCc
Confidence 4444555 6899999999999992 2222 1223335567899999999999888665 4566666642 11 0
Q ss_pred e-----------EEE--eeeC-----------CCCCCCeeEEECC----CCCEEEEEcCCCcEEEEECCC---C-CeEeE
Q 019603 237 K-----------RCG--FSLE-----------PSPNTNTEATFTP----DGQYVVSGSGDGTLHAWNINT---R-NEVAC 284 (338)
Q Consensus 237 ~-----------~~~--~~~~-----------~~~~~~~~~~fs~----~~~~l~sgs~Dg~i~vWd~~~---~-~~~~~ 284 (338)
. ..+ +.+. +.+...+...|+- ....|+| +....+.+||+.. + ...+.
T Consensus 657 ~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivt-stG~f~v~Wnf~kV~~g~~~~Y~ 735 (794)
T PF08553_consen 657 LGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVT-STGPFVVTWNFKKVKRGKKDPYQ 735 (794)
T ss_pred cccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEE-eccCEEEEEEHHHHhCCCCCceE
Confidence 0 001 1111 1112223445542 2345554 4556899999862 2 34455
Q ss_pred eeCCCCceEE--EEEcCCCceEEeecc
Q 019603 285 WNGNIGVVAC--LKWAPRRAMFVAASS 309 (338)
Q Consensus 285 ~~~h~~~v~~--l~~~p~~~~l~s~s~ 309 (338)
++.....|.+ ..|..+...+++--.
T Consensus 736 ikry~~~V~~dnF~fg~d~~vival~~ 762 (794)
T PF08553_consen 736 IKRYDENVVADNFKFGSDKNVIVALPN 762 (794)
T ss_pred EEEcCCceEEccceeCCCCcEEEEccc
Confidence 6655566655 556666666666543
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.76 E-value=0.005 Score=61.44 Aligned_cols=195 Identities=14% Similarity=0.218 Sum_probs=123.0
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCccee-eeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeC--CCCCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-GILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDS--RSYDKGPF 194 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~--~~~~~~~~ 194 (338)
+.|.++.|..+...++-+..+|.|.+-|..+.... .-....+....+|+||+..++..+..+++.+-+- ......++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 68899999988888888888999999988765432 1122345566889999999998888887766431 00000000
Q ss_pred ----------e---------eEE-ecC------------------CCCceEEEEEcCCCCEEEEEec----C-CcEEEEE
Q 019603 195 ----------D---------TFL-VGG------------------DTAEVCDIKFSNDGKSMLLTTT----N-NNIYVLD 231 (338)
Q Consensus 195 ----------~---------~~~-~~~------------------~~~~i~~v~~sp~~~~i~~~~~----d-~~i~i~~ 231 (338)
. .+. ..| ....-+.+.|-.||++++++.. + +++++||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 0 000 000 0111234789999999888432 3 7899999
Q ss_pred ccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE---cCCCcEEEEECCC---CCeEeEeeCCCCceEEEEEcCCCceEE
Q 019603 232 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg---s~Dg~i~vWd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~ 305 (338)
.+ |.... ..+.....-.+++|-|.|..+++- ..|+.|.++.-+- +.-+-.+......|..|+|+.++..||
T Consensus 229 rE-g~Lns--~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 229 RE-GALNS--TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred cc-chhhc--ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 75 32211 111222334568999999999984 4566799998753 222223333344599999999999999
Q ss_pred eec-----ceEEEee
Q 019603 306 AAS-----SVLSFWI 315 (338)
Q Consensus 306 s~s-----~~~~iw~ 315 (338)
.-. ..+++|-
T Consensus 306 v~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWT 320 (1265)
T ss_pred eeecccccceEEEEE
Confidence 832 2377875
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.004 Score=57.33 Aligned_cols=193 Identities=19% Similarity=0.295 Sum_probs=114.4
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEE---CC-CeEEEEECCCcceeeeeeecCcc-EEEEcCCCCEEE-EEEcCCe
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGS---LD-HSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFA-VAMEAGA 180 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs---~D-~~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~dg~ 180 (338)
+...+.+..-...+..-.|+|+++.++..+ .. ..+.++|+..++........+.. ...|+|+|..++ +...||.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444444544555677778999987654332 22 35889999888765555544433 367899998665 5556676
Q ss_pred EEEE--eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-C--cEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 181 IKLF--DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 181 i~i~--d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
..|| |+..... ..+..+ .+.-+.=.|+|||++++..+.. | .|++++...+.. ...+...... ..-.+
T Consensus 262 ~~iy~~dl~~~~~----~~Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~--~~p~~ 333 (425)
T COG0823 262 PDIYLMDLDGKNL----PRLTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN--SNPVW 333 (425)
T ss_pred ccEEEEcCCCCcc----eecccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC--cCccC
Confidence 6655 5543221 111111 1112245699999999877653 3 466777665544 2233222211 14679
Q ss_pred CCCCCEEEEEcC-CCc--EEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 256 TPDGQYVVSGSG-DGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 256 s~~~~~l~sgs~-Dg~--i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
||||++++..+. +|. |.+.++.++...+.+. +......-.|.|++..++..+
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 999999887664 344 6666666655444443 234444567778887776655
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.0087 Score=55.16 Aligned_cols=161 Identities=18% Similarity=0.267 Sum_probs=89.3
Q ss_pred ceeEEEEccCCeE--EEeecCCccceEEEEEcCCCCEE-EEEECCCeEEEE--ECCCcceeeeeeecCcc-EEEEcCCCC
Q 019603 97 ESLRYLSMYDNRI--LRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIW--DLRVNACQGILRLRGRP-TVAFDQQGL 170 (338)
Q Consensus 97 ~~i~~~~~~~~~~--~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iW--d~~~~~~~~~~~~~~~~-~~~~~~~~~ 170 (338)
..+.++++.+++. +-.+.++... -+|+|+|++| ++...|+...|| |+..+...+.-...+.. .-.|+|+|.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~---P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGA---PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCC---ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 3578888877654 3344555443 4799999865 577788877776 66655533211122221 357899998
Q ss_pred EEEEE-EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-Cc--EEEEEccCCeeEEEeeeCCC
Q 019603 171 VFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-NN--IYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 171 ~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-~~--i~i~~~~~~~~~~~~~~~~~ 246 (338)
.++-. ...|.-+||-...... ........+.. -..-.|+|||++++..+.. +. |.+.+..++.....+. .
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~-~~~riT~~~~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt---~ 368 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGS-QVTRLTFSGGG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT---S 368 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCC-ceeEeeccCCC--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc---c
Confidence 66544 4456656664332111 11112211111 1145789999999988854 33 5555655554322222 2
Q ss_pred CCCCeeEEECCCCCEEEEEc
Q 019603 247 PNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs 266 (338)
......-++.|+|..+...+
T Consensus 369 ~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 369 TYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cccCCCCCcCCCCceEEEec
Confidence 22233456788888766544
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00014 Score=67.96 Aligned_cols=102 Identities=13% Similarity=0.211 Sum_probs=77.1
Q ss_pred EEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EeE
Q 019603 210 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-----VAC 284 (338)
Q Consensus 210 ~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~-----~~~ 284 (338)
+++..+++++.|+.-|.+++|+...+. +..+...+....+..++.|++..++|.|+..|.|-|+.++.+.+ +..
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 355578899999999999999976554 33334434444556678899999999999999999999986422 112
Q ss_pred e-eCCCCceEEEEEcCCCceEEeecceEE
Q 019603 285 W-NGNIGVVACLKWAPRRAMFVAASSVLS 312 (338)
Q Consensus 285 ~-~~h~~~v~~l~~~p~~~~l~s~s~~~~ 312 (338)
+ +.|...|+||.|++++..+.+|+...+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCce
Confidence 2 357889999999999999999985433
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.02 Score=54.12 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=77.5
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
|...|+=-+++..+++++-|++-|.+.+|+...+..++.-..-..++.++..-.....++.+ ...++.|-++-+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAa-----gt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAA-----GTASGRVSVFQLN 106 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhh-----hcCCceEEeehhh
Confidence 44556666778889999999999999999998887654322223444443332222222221 1223455555554
Q ss_pred CCeE-----EEee-cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 019603 106 DNRI-----LRYF-KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV 148 (338)
Q Consensus 106 ~~~~-----~~~~-~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~ 148 (338)
.... +..+ +.|...|+++.|++++..+++|..-|+|..-.+..
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3211 1111 34889999999999999999999999999887765
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.01 Score=56.82 Aligned_cols=145 Identities=13% Similarity=0.140 Sum_probs=91.9
Q ss_pred cCCCCEEEEEECCCeEEEEECCCcceeeeeeec-CccEEEEcCC-----CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe
Q 019603 126 SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQ-----GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV 199 (338)
Q Consensus 126 ~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 199 (338)
...|++++|||.||+|.|-.+-+.+....+..+ ...+++++|+ ..++++|+..| +.++.-+-... ....+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v~l 156 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSVVL 156 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--ccceee
Confidence 446899999999999999988776654444443 2346888886 56788888877 66664221111 112233
Q ss_pred cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC----CCCCCeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 200 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP----SPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 200 ~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~----~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
....+.|.++.|. |.+|+-+. |-.|+++|...+......+... .......+.|.++..+++ |+.-+|+|..
T Consensus 157 ~~~eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~ 231 (846)
T KOG2066|consen 157 SEGEGPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICS 231 (846)
T ss_pred ecCccceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEE
Confidence 3456789999994 66666654 6679999987665443222111 111234577877665553 3555788888
Q ss_pred CCC
Q 019603 276 INT 278 (338)
Q Consensus 276 ~~~ 278 (338)
++.
T Consensus 232 I~~ 234 (846)
T KOG2066|consen 232 IKK 234 (846)
T ss_pred Eec
Confidence 873
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.57 E-value=0.038 Score=46.98 Aligned_cols=195 Identities=8% Similarity=0.114 Sum_probs=107.9
Q ss_pred EeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcCCCCEEEEEEcCCeEEEEeC
Q 019603 111 RYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~dg~i~i~d~ 186 (338)
+.+.+-.+.+.+|+|.|+.+ .++.....+.|...++ .++.+..+.+.+ ...+.+-.++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34566667799999999866 5566677788877886 577777777654 234666666655555556888888887
Q ss_pred CCCCC----CCCeeEEec---CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccC---CeeEEEe-----e-eCCCCCCC
Q 019603 187 RSYDK----GPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGF-----S-LEPSPNTN 250 (338)
Q Consensus 187 ~~~~~----~~~~~~~~~---~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~---~~~~~~~-----~-~~~~~~~~ 250 (338)
..... .....+.+. .++..+-.++|+|.++.++++-......++.... +...... . ....-...
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 43211 111112211 2455688899999988888887777777776543 1111110 0 01122345
Q ss_pred eeEEECCCC-CEEEEEcCCCcEEEEECCCCCeEeEeeCCC---------CceEEEEEcCCCceEEee
Q 019603 251 TEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 251 ~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~l~s~ 307 (338)
..++|+|.. .+++-.++...|.+.| .+|+.+..+.-.. ..--.|+|.|+|++.++.
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 678898864 5666778889999999 5677666554222 235789999999877764
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.44 E-value=0.095 Score=48.35 Aligned_cols=204 Identities=13% Similarity=0.167 Sum_probs=102.5
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc---eeeeeeecCcc-E----EEEcCCCC
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRGRP-T----VAFDQQGL 170 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~---~~~~~~~~~~~-~----~~~~~~~~ 170 (338)
|++|+.. |+.+..+.--.+.|.++.|+.+ ..|+.-..||+++++|+.... ....+...+.. + ..+..+|.
T Consensus 63 I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi 140 (410)
T PF04841_consen 63 IQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI 140 (410)
T ss_pred EEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE
Confidence 5555443 3333333322289999999874 566677899999999985322 00001111110 0 11222443
Q ss_pred EEEEEEcCCeEEEEeCCCCCCC-------CCeeEEecCCCC-ceE-EEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKG-------PFDTFLVGGDTA-EVC-DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~-~i~-~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~ 241 (338)
.+++ .++.+.+.. ..... .........+.. ... ...++.+....+....++.+.+.+....+.
T Consensus 141 vvLt--~~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---- 212 (410)
T PF04841_consen 141 VVLT--GNNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---- 212 (410)
T ss_pred EEEC--CCCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----
Confidence 3333 333333332 11110 000000000000 000 023444555555555555666554322111
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC-CCceEEEEEcCCCceEEeecceEEEe
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAASSVLSFW 314 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s~~~~iw 314 (338)
....+++..+++||+|++||.-..+|.+.|...+-.+....+.-. ......+.|.-+...++.....+.+.
T Consensus 213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lv 284 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLV 284 (410)
T ss_pred --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEE
Confidence 112357899999999999999999999999887655555554432 34556677777665555544334433
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.39 E-value=0.077 Score=49.25 Aligned_cols=226 Identities=12% Similarity=0.165 Sum_probs=104.3
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
...-....+.++|+|++++.+ .||...|+.....+... .+ .....+|.. ....... ....+|+++.-
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~G---~g~~~vw~~-~n~yAv~------~~~~~I~I~kn 96 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--FG---SGLSFVWSS-RNRYAVL------ESSSTIKIYKN 96 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--EE---E-SEEEE-T-SSEEEEE-------TTS-EEEEET
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--cC---ceeEEEEec-CccEEEE------ECCCeEEEEEc
Confidence 344456899999999998885 57888888754333221 11 122233433 2222211 11356777543
Q ss_pred cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEE
Q 019603 105 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 184 (338)
.+.+..+.++-. ..+..+-. |..|...+.+ .|.+||..+++.+..+.......+.|+++|.+++..+.+ .+.++
T Consensus 97 ~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 97 FKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp TEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred CccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 322221122111 12222222 6777666654 899999999988877776655678999999999888765 56666
Q ss_pred eCCCC------CCCCCeeEEecCC-CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC
Q 019603 185 DSRSY------DKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257 (338)
Q Consensus 185 d~~~~------~~~~~~~~~~~~~-~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 257 (338)
+.... ..+--+.+....+ ...|....|..+ .++..+.. .+.. ...|+......+. .+..-+.+.|
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld---~~~yllgy~~ 242 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD---KPLYLLGYLP 242 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---S--EEEEEET
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---CceEEEEEEc
Confidence 53221 0000001211122 445666677544 44444444 5555 3345443222221 2344455666
Q ss_pred CCCEEEEEcCCCcEEEEECC
Q 019603 258 DGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~ 277 (338)
....++....|+.|..+.+.
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--
T ss_pred cCCEEEEEECCCCEEEEEEC
Confidence 66667777777777776654
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0015 Score=60.60 Aligned_cols=93 Identities=11% Similarity=0.206 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC-eeEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Q 019603 204 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN-TEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 282 (338)
Q Consensus 204 ~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~ 282 (338)
..+..+.|+|.-..+|....+|.+.+.-.. ...+..+..++ ..+ .+++|.|||+.||.|=.||+|++.|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~--~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG--ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC--CccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 346778999999999999999999888765 33333333333 334 49999999999999999999999999998877
Q ss_pred eEee-CCCCceEEEEEcC
Q 019603 283 ACWN-GNIGVVACLKWAP 299 (338)
Q Consensus 283 ~~~~-~h~~~v~~l~~~p 299 (338)
..+. .-...|.++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 6632 2346778888864
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.30 E-value=0.0092 Score=56.59 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=65.2
Q ss_pred CceeEEEEccC----C-eEEEeecCCccceEEEEEcCCCCEE-EEEECCCeEEEEECCCcce------------eeeeee
Q 019603 96 GESLRYLSMYD----N-RILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNAC------------QGILRL 157 (338)
Q Consensus 96 ~~~i~~~~~~~----~-~~~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~------------~~~~~~ 157 (338)
++.+.++|..+ + +.+..+ --.+....+.++||++++ +++..+.+|.|.|+.+.+. ....+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 46788888877 2 333333 345667889999999975 5667899999999976432 122222
Q ss_pred cCcc-EEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 019603 158 RGRP-TVAFDQQGLVFAVAMEAGAIKLFDSRS 188 (338)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~dg~i~i~d~~~ 188 (338)
...+ -..|+++|..+.+-.-|..+-.|++..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2223 368899999888888899999999654
No 342
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.016 Score=53.10 Aligned_cols=129 Identities=20% Similarity=0.290 Sum_probs=87.4
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCC--E-----EEEEECCCeEEEEECCCccee--eeeeecC----c--c
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVND--S-----FMSGSLDHSVRIWDLRVNACQ--GILRLRG----R--P 161 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~--~-----l~Sgs~D~~I~iWd~~~~~~~--~~~~~~~----~--~ 161 (338)
..++..|++.|+.+..++-|.+ |+-+.+.|+.+ + -+.|=.|..|.-||.|.+... ...+.+. . .
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 5788999999999999998888 77778888754 2 245667899999999854331 1111111 1 1
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEc
Q 019603 162 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~ 232 (338)
+.+-..+| .+++|+.+|.||+||- .+... ...+.+-..+|..+..+.+|++|+..+ +..+.+.+.
T Consensus 435 c~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 435 CFATTESG-YIVVGSLKGDIRLYDR-IGRRA---KTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeeecCCc-eEEEeecCCcEEeehh-hhhhh---hhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 23334444 6789999999999984 22221 112335567799999999999877554 566666654
No 343
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.27 E-value=0.12 Score=45.62 Aligned_cols=245 Identities=12% Similarity=0.107 Sum_probs=128.7
Q ss_pred EEeecCCCEEEEeeC----------CCcEEEEEcCCCeeEeEEeeccc---C----eeeEEEeecCCeeEEecCccCCCC
Q 019603 33 LDFHRKDDLLVTASD----------DDSVRLYDIVSAKLIKTTYHKKH---G----ADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 33 l~~s~~~~~l~s~s~----------D~~i~iWd~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
+.++|+++.+++++. ..-|.+||.++-....-+.-..+ . ...+.++.++..++.... +=
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~----TP 116 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF----TP 116 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE----SS
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc----CC
Confidence 567899998887653 34599999998765543332221 1 122344444444433221 11
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECC-Ccceeee----eeecCccE---EEEcC
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQGI----LRLRGRPT---VAFDQ 167 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~-~~~~~~~----~~~~~~~~---~~~~~ 167 (338)
..++.+.|+..++.+..+. -.+.. +.+-..++.|.+-+.||++....+. .|+.... |.....+. -.+..
T Consensus 117 a~SVtVVDl~~~kvv~ei~-~PGC~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEID-TPGCW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp SEEEEEEETTTTEEEEEEE-GTSEE--EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred CCeEEEEECCCCceeeeec-CCCEE--EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 1467777777776655542 11111 1121123568888999999998886 3433211 11111111 12233
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC--C------CCceEEEEEcCCCCEEE-EEec--C-------CcEEE
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--D------TAEVCDIKFSNDGKSML-LTTT--N-------NNIYV 229 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~------~~~i~~v~~sp~~~~i~-~~~~--d-------~~i~i 229 (338)
.+..+.--+-.|.++-.|+............+.. . .+.-.-+++++....+. .-.. + ..|++
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 4444444566777777765432211001111000 0 11122356665443333 2221 1 15888
Q ss_pred EEccCCeeEEEeeeCCCCCCCeeEEECCCCC-EEEEE-cCCCcEEEEECCCCCeEeEeeC
Q 019603 230 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSG-SGDGTLHAWNINTRNEVACWNG 287 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~-~l~sg-s~Dg~i~vWd~~~~~~~~~~~~ 287 (338)
+|+.+++.+..+.+.. .+.++..+.+.+ +|++. ..++.+.|||..+++.++.+++
T Consensus 274 ~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 274 YDLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEEEEEE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EECCCCeEEEEEeCCC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 8999998887776643 366788888776 55544 5689999999999999998874
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.25 E-value=0.025 Score=52.37 Aligned_cols=177 Identities=13% Similarity=0.127 Sum_probs=92.9
Q ss_pred CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEE-eCCCCCCCCC
Q 019603 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF-DSRSYDKGPF 194 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~-d~~~~~~~~~ 194 (338)
..-....++++|++++++. ..||.-.|+....... ..........|.+.+ .+++-...+.|+++ ++.... .
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~---k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~---~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN---KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV---V 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE---EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T---T
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc---cccCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc---c
Confidence 3445678999999998877 4567777776322221 111223346777744 57777778889996 322111 1
Q ss_pred eeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEE
Q 019603 195 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 274 (338)
Q Consensus 195 ~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vW 274 (338)
..+.. ...+..+-. |..++..+ ++.|.+||..+++.++..... .+..+.|+++|.+++-.+.+ .++|.
T Consensus 103 k~i~~---~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 103 KSIKL---PFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp --------SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred eEEcC---CcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 11111 112333322 66555554 458999999988877655432 26889999999999988765 78888
Q ss_pred ECCCC-----------CeEeEeeCCCCceEEEEEcCCCceEEeecceEEE
Q 019603 275 NINTR-----------NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSF 313 (338)
Q Consensus 275 d~~~~-----------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~i 313 (338)
+.+.. .....+.--...|.+..|..+ -++.+....++.
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lkY 219 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLKY 219 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEEE
Confidence 87643 133333222578899999888 555554455665
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.17 E-value=0.17 Score=45.50 Aligned_cols=261 Identities=13% Similarity=0.096 Sum_probs=109.3
Q ss_pred EeecCCCE-EEEeeCCCcEEEE--EcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEE
Q 019603 34 DFHRKDDL-LVTASDDDSVRLY--DIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110 (338)
Q Consensus 34 ~~s~~~~~-l~s~s~D~~i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (338)
+|.++|+. |+.+..|+.-.+| |+++++..+...+.........+++....++.. ..+..++-.++.+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv------~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYV------KNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEE------ETTTEEEEEETTT--EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEE------ECCCeEEEEECCcCcEE
Confidence 45678865 4445456665555 888887655433322222223344444433321 12367888888888776
Q ss_pred EeecCCccceEEEEEc--CCCCEEEEE---ECC-------------------CeEEEEECCCcceeeeeeecCc-cEEEE
Q 019603 111 RYFKGHKERVISLCMS--PVNDSFMSG---SLD-------------------HSVRIWDLRVNACQGILRLRGR-PTVAF 165 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~--~~~~~l~Sg---s~D-------------------~~I~iWd~~~~~~~~~~~~~~~-~~~~~ 165 (338)
..+.-....+-...|. .++..++-. -.| ..|..=|+++++...++....- .-+.+
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~f 195 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQF 195 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCccc
Confidence 6666666666545553 334443211 111 1222224444443322222110 11345
Q ss_pred cCCCC-EEEEEEc---CCe-EEEEeCCCCC--CCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-----CCcEEEEEcc
Q 019603 166 DQQGL-VFAVAME---AGA-IKLFDSRSYD--KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAY 233 (338)
Q Consensus 166 ~~~~~-~~~~~~~---dg~-i~i~d~~~~~--~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-----d~~i~i~~~~ 233 (338)
+|... .+.-+.+ +.. -|||-++... ..++.. ......+..=-|.|||..+..-+. +..|.-++..
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~---~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR---RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec---CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 55433 2222221 111 2445433211 111100 011223444468999987776543 2245566777
Q ss_pred CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC----------------cEEEEECCCCCeEeEeeCCC--------
Q 019603 234 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG----------------TLHAWNINTRNEVACWNGNI-------- 289 (338)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg----------------~i~vWd~~~~~~~~~~~~h~-------- 289 (338)
+++.....+.. .....-.++||++++-=+.|. .|++++...++.. .+..|.
T Consensus 273 t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~ 347 (386)
T PF14583_consen 273 TGERRRLMEMP----WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDG 347 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTT
T ss_pred CCCceEEEeCC----ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecC
Confidence 76554333332 244566788999887644442 5778888765543 222221
Q ss_pred --C-ceEEEEEcCCCceEEeec
Q 019603 290 --G-VVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 290 --~-~v~~l~~~p~~~~l~s~s 308 (338)
. .=-...|+||+++++-.|
T Consensus 348 ~~q~~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 348 DRQVTHPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp BSSTT----EE-TTSSEEEEEE
T ss_pred CCccCCCCCccCCCCCEEEEEC
Confidence 1 224589999999888776
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.16 E-value=0.094 Score=44.05 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=82.5
Q ss_pred EEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe
Q 019603 143 IWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 222 (338)
Q Consensus 143 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~ 222 (338)
.|-+..++|+. ..+.+........+..|+..+.+.-.|..+... ...... +...+-..+. -|.+++.+.
T Consensus 2 rW~vd~~kCVD-----aspLVV~~dskT~v~igSHs~~~~avd~~sG~~--~We~il-g~RiE~sa~v---vgdfVV~GC 70 (354)
T KOG4649|consen 2 RWAVDLRKCVD-----ASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNL--IWEAIL-GVRIECSAIV---VGDFVVLGC 70 (354)
T ss_pred ceeccchhhcc-----CCcEEEecCCceEEEEecCCceEEEecCCCCcE--Eeehhh-CceeeeeeEE---ECCEEEEEE
Confidence 46555555532 222232232344666777777776666554321 000001 1111122222 366799999
Q ss_pred cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC
Q 019603 223 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 287 (338)
Q Consensus 223 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~ 287 (338)
..+.+++.+..+|+....|+....- -.+....+++..+..|+.|+..+.-|..+..++...+-
T Consensus 71 y~g~lYfl~~~tGs~~w~f~~~~~v--k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 71 YSGGLYFLCVKTGSQIWNFVILETV--KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ccCcEEEEEecchhheeeeeehhhh--ccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 9999999999999877777655431 12345677899999999999999999999999888653
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.12 E-value=0.00037 Score=64.70 Aligned_cols=187 Identities=17% Similarity=0.201 Sum_probs=111.7
Q ss_pred cceEEEEEcCCC--CEEEEEECCCeEEEEECCCccee-ee-eeec--CccEEEEcC-CCCEEEEEE----cCCeEEEEeC
Q 019603 118 ERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQ-GI-LRLR--GRPTVAFDQ-QGLVFAVAM----EAGAIKLFDS 186 (338)
Q Consensus 118 ~~V~~l~~~~~~--~~l~Sgs~D~~I~iWd~~~~~~~-~~-~~~~--~~~~~~~~~-~~~~~~~~~----~dg~i~i~d~ 186 (338)
..+.|+++.-+. ..++.|..+|.|-+-.++..... .. ...+ ...+++|++ |..++++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345566554443 46788999999999888765432 11 1112 233467766 344666653 5678999998
Q ss_pred CCCCCCCCeeEEecC-CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC-CCCEEEE
Q 019603 187 RSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVS 264 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~-~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~l~s 264 (338)
.+.-..|...-...+ .......++|..+.+.+++|...+.+.++|++....... ......+..+..+| .+.|+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---SVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---hhhhhhcccceecCCCCCceec
Confidence 765333332222111 222344667777888888999999999999763221110 01112344577788 6778877
Q ss_pred EcCCCcEEEEE-CCC-CCeEeEeeCCC----CceEEEEEcCCCc-eEEeec
Q 019603 265 GSGDGTLHAWN-INT-RNEVACWNGNI----GVVACLKWAPRRA-MFVAAS 308 (338)
Q Consensus 265 gs~Dg~i~vWd-~~~-~~~~~~~~~h~----~~v~~l~~~p~~~-~l~s~s 308 (338)
-. ||.|-+|| ..+ .+++..+.... ..+..++|.|..+ .+++.+
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence 65 99999999 332 22333332222 2488999999876 455554
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.003 Score=62.22 Aligned_cols=101 Identities=17% Similarity=0.304 Sum_probs=74.3
Q ss_pred CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEE
Q 019603 215 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC 294 (338)
Q Consensus 215 ~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~ 294 (338)
+..++.++..+.+...|+..+ .....+......++++++|+.+|+.++.|-.+|.|.+||+..++..+.+.-|..+..+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 445788888888888887543 2212344445578999999999999999999999999999999888888755544444
Q ss_pred ---EEEcCCCceEEeecceEEEeee
Q 019603 295 ---LKWAPRRAMFVAASSVLSFWIP 316 (338)
Q Consensus 295 ---l~~~p~~~~l~s~s~~~~iw~~ 316 (338)
+.|..++..+.+++...++|..
T Consensus 178 vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCceEEE
Confidence 3444566677777766677753
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.11 E-value=0.18 Score=44.85 Aligned_cols=133 Identities=11% Similarity=0.094 Sum_probs=81.0
Q ss_pred ceeEEEEccCC----eEEEee--cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeeeeee-cCccEEEEcCC
Q 019603 97 ESLRYLSMYDN----RILRYF--KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRL-RGRPTVAFDQQ 168 (338)
Q Consensus 97 ~~i~~~~~~~~----~~~~~~--~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~-~~~~~~~-~~~~~~~~~~~ 168 (338)
+.+.++.+... ..++.+ ....++|+++.-- .+ +|+.+. .+.|.+|++...+ ....-.. ......++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 77888888873 122222 2357889988765 33 444333 4899999998777 4333222 22344556666
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 233 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~ 233 (338)
+.++++|.....+.++..+.. ...+...-.......++++.|-++++.++++..++++.++...
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~-~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEE-NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETT-TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccEEEEEEcccCEEEEEEEcc-CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 778889988888888754321 1112111122235568888888666788999999999998754
No 350
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.07 E-value=0.16 Score=49.09 Aligned_cols=185 Identities=13% Similarity=0.205 Sum_probs=97.5
Q ss_pred CccceEEEEEcCCCCEEEEEE------CCC--eEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcC-CeEEEEeC
Q 019603 116 HKERVISLCMSPVNDSFMSGS------LDH--SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA-GAIKLFDS 186 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~Sgs------~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~i~i~d~ 186 (338)
....+.+.+++|+++.++..- .|. .|.+++.. +...............|+|+|..+...... ..+++.+.
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 334678899999999876444 244 44444542 222111121222346789998766655432 22222221
Q ss_pred CCCCCCCCeeEEec------CCCCceEEEEEcCCCCEEEEEecCCcEEE---EEccCCeeEE--EeeeCC-CCCCCeeEE
Q 019603 187 RSYDKGPFDTFLVG------GDTAEVCDIKFSNDGKSMLLTTTNNNIYV---LDAYGGEKRC--GFSLEP-SPNTNTEAT 254 (338)
Q Consensus 187 ~~~~~~~~~~~~~~------~~~~~i~~v~~sp~~~~i~~~~~d~~i~i---~~~~~~~~~~--~~~~~~-~~~~~~~~~ 254 (338)
.. ...+...... .....|..+.|||||+.+++.. ++.+++ .....|.... ..++.. -...+..+.
T Consensus 427 ~~--~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PA--TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CC--CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 10 1111111110 1134699999999999998876 467776 4444454111 111111 122357789
Q ss_pred ECCCCCEEEEEcCCCcEEEEECC-CCCeEeEeeC--CCCceEEEEEcCCCceEEe
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNG--NIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s 306 (338)
|.+++.++ .+..++...+|.+. .+.....+.+ ....+.+|+=+|. .++++
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~ 556 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVT 556 (591)
T ss_pred EecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEE
Confidence 99999865 55555555566654 2322222233 2567788888874 34433
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0013 Score=63.11 Aligned_cols=105 Identities=11% Similarity=0.217 Sum_probs=80.4
Q ss_pred EEEcCCCCEEEEEe----cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeE
Q 019603 209 IKFSNDGKSMLLTT----TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 284 (338)
Q Consensus 209 v~~sp~~~~i~~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~ 284 (338)
..|+|...++++++ ..|.|.||- .+|+...- ..-+.++++++|+|..-.|+.|=+-|.+.||+..+.+....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~---Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD---VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc---cccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 35888877776654 346777775 34543221 11234567899999999999999999999999998766666
Q ss_pred eeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 285 WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 285 ~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
-..|...|..|.|||+|..+++++ +.+-+|..+
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 668999999999999999999998 577889766
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.01 E-value=0.022 Score=56.03 Aligned_cols=140 Identities=11% Similarity=0.123 Sum_probs=91.4
Q ss_pred EEEECCCeEEEEECCCcceeeeeeecCcc-EEEEcCC-------CCEEEEEEcCCeEEEEeCCCCCCCCCee-EEecCCC
Q 019603 133 MSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQ-------GLVFAVAMEAGAIKLFDSRSYDKGPFDT-FLVGGDT 203 (338)
Q Consensus 133 ~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~ 203 (338)
........|.--|+..|+.+..+..+... +..+.|+ .....+|..+..+..||.|......... .......
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred ecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 34445677888889888887777765533 4555553 3345778889999999998643111100 0011223
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 204 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 204 ~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
...+|++-..+| +|++|+.+|.|++||..+-+....+. +--.+|..+..+.||++|+..+ +..+.+.+.
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 456777777666 59999999999999954322112222 3235799999999999987655 456777775
No 353
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.92 E-value=0.2 Score=42.15 Aligned_cols=139 Identities=18% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCcc
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKE 118 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~ 118 (338)
.++++-||.-+.++.-|.++|+......... .+.+-++. -++.++.+ .+. +.+...+..+|+.+..+..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~G-Cy~-----g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLG-CYS-----GGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEE-Ecc-----CcEEEEEecchhheeeeeehhh
Confidence 3578888888999999999998754322111 11111111 12222221 111 4567777778876666543222
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE--EEEcC-CCCEEEEEEcCCeEEEEeC
Q 019603 119 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~dg~i~i~d~ 186 (338)
-=......+++..+..|+.|++...-|.++..|+-..+..+... -++++ ++.+ ..+...|.+.-...
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl-y~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL-YAAITAGAVLAVTK 164 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceE-EEEeccceEEEEcc
Confidence 11224567788999999999999999999988865555444321 23455 3333 33444444444333
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.91 E-value=0.3 Score=44.11 Aligned_cols=220 Identities=16% Similarity=0.178 Sum_probs=116.2
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee-------------------e
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-------------------L 157 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~-------------------~ 157 (338)
+...++|+.+++....... ...+....|+|+++.++-.. ++.|.++++..++....-. +
T Consensus 23 ~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred eeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 4577888888766554443 67788899999999988765 5899999986653321111 1
Q ss_pred cCccEEEEcCCCCEEEEEE-cCCeEEEEeCC---CC----------------CCCCCe-eEEe----------------c
Q 019603 158 RGRPTVAFDQQGLVFAVAM-EAGAIKLFDSR---SY----------------DKGPFD-TFLV----------------G 200 (338)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-~dg~i~i~d~~---~~----------------~~~~~~-~~~~----------------~ 200 (338)
.....+-|+|+|..++... .+..++.+.+- .. ...+.. .... .
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence 1123467999999877653 23333332210 00 000000 0000 1
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCC-----cEEEEEccCCeeEEEeeeCCCCCCC---eeEEEC-CCCC-EEEEEcCCCc
Q 019603 201 GDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSPNTN---TEATFT-PDGQ-YVVSGSGDGT 270 (338)
Q Consensus 201 ~~~~~i~~v~~sp~~~~i~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~---~~~~fs-~~~~-~l~sgs~Dg~ 270 (338)
.....+..+.|.++++.+++.-.++ .+.+.|..++......+.. ...++ ....|. +++. +|.....||.
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 1233467788999888444443322 3556677666554433322 12222 345554 5554 5555567786
Q ss_pred EEEEECCC-CCeEeEeeCCCCceEE-EEEcCCCceE-Eeecc----eEEEeeeCCC
Q 019603 271 LHAWNINT-RNEVACWNGNIGVVAC-LKWAPRRAMF-VAASS----VLSFWIPNPS 319 (338)
Q Consensus 271 i~vWd~~~-~~~~~~~~~h~~~v~~-l~~~p~~~~l-~s~s~----~~~iw~~~~~ 319 (338)
-+|+-+.. +...+.+....-.|.. +.|++++..+ .++.. .-.|+..+..
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 65555542 3345566655566655 8888886633 34432 3456665544
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.90 E-value=0.24 Score=42.84 Aligned_cols=232 Identities=12% Similarity=0.117 Sum_probs=117.0
Q ss_pred cCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEe----
Q 019603 37 RKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRY---- 112 (338)
Q Consensus 37 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---- 112 (338)
..++.|+.|.++| +.+++............ ...+..+...+.-..++..+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-~~~I~ql~vl~~~~~llvLs-------d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK-LSSITQLSVLPELNLLLVLS-------DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee-cceEEEEEEecccCEEEEEc-------CCccEEEEchhhccccccccc
Confidence 3577889998888 88998832222222211 22355555544444444322 37788888765332221
Q ss_pred ----------ecCCccceEEEE--EcCCCCEEEEEECCCeEEEEECCCc-----ceeeeeeecCcc-EEEEcCCCCEEEE
Q 019603 113 ----------FKGHKERVISLC--MSPVNDSFMSGSLDHSVRIWDLRVN-----ACQGILRLRGRP-TVAFDQQGLVFAV 174 (338)
Q Consensus 113 ----------~~~H~~~V~~l~--~~~~~~~l~Sgs~D~~I~iWd~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (338)
.....+.+...+ -...+...+.....++|.+|..... +..+.+.....+ .+.|. +..+++
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICV 153 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEE
Confidence 112234454444 1223344444555679999887543 233444444332 35555 556677
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEE--------ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFL--------VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
|..++ ..+.|+.+....++.... .......+..+..+ ++++++ + .++.-.+.+. .|+......+.-
T Consensus 154 ~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll-~-~~~~g~fv~~-~G~~~r~~~i~W- 227 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLL-C-YDNIGVFVNK-NGEPSRKSTIQW- 227 (275)
T ss_pred EeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEE-E-ecceEEEEcC-CCCcCcccEEEc-
Confidence 76554 556677643221110000 00011223333333 344444 3 2334444443 343332122221
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 288 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h 288 (338)
......+++ ...||+..+.+ .|.||++.+++.++.+...
T Consensus 228 ~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 228 SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 123445555 34688887765 5999999999999888643
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.35 Score=44.20 Aligned_cols=201 Identities=14% Similarity=0.187 Sum_probs=126.5
Q ss_pred eEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE
Q 019603 31 NSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 31 ~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
.++.+++.++ ..+....++.|.+.|..+.+...+..... ....+.+.+....++.+.... ..+++.+.|..+++.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~---~~~~vsvid~~t~~~ 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN---GNNTVSVIDAATNKV 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEeccc---CCceEEEEeCCCCeE
Confidence 4677888877 45556567999999988777666543332 344566666666666543211 246788888888877
Q ss_pred EEeecCCccceEEEEEcCCCCEE-EEEECCCeEEEEECCCcceee-----eeee-cCccEEEEcCCCCEEEEEEcC---C
Q 019603 110 LRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQG-----ILRL-RGRPTVAFDQQGLVFAVAMEA---G 179 (338)
Q Consensus 110 ~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~d---g 179 (338)
+.+...-..+ ..++++|+++.+ ++-+.+++|.+.|........ .+.. .....+.++++|..+.+.... +
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 7765433334 889999999854 455689999999976655432 1111 222347889999855554433 4
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccCCeeEE
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRC 239 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~~~ 239 (338)
.+...|...... +......+.. .-..+.++|+|+.+.+... .+.+.+.|..+.....
T Consensus 232 ~v~~id~~~~~v--~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 232 NVLKIDTATGNV--TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred eEEEEeCCCceE--EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 788888665321 1010011111 3445789999998877744 4789999877665443
No 357
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.061 Score=45.99 Aligned_cols=131 Identities=20% Similarity=0.258 Sum_probs=96.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 201 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 201 ~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
+.+..++++.|+|+.+.+++......-.++=...|..+...++.+- .....+.+..+|+++++-=.++.++++.+..+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 4455699999999999998888887777776677888877666553 335568888899999998899999999987653
Q ss_pred eEeEee---------CC-CCceEEEEEcCCCceEEeecc----eEEEeeeCCCCCCCCCCCCCccc
Q 019603 281 EVACWN---------GN-IGVVACLKWAPRRAMFVAASS----VLSFWIPNPSSNSTDESTDPQAT 332 (338)
Q Consensus 281 ~~~~~~---------~h-~~~v~~l~~~p~~~~l~s~s~----~~~iw~~~~~~~~~~~~~~~~~~ 332 (338)
.+...+ .+ ...--.|+|.|....|..+-+ .|..|...+....-....+|+++
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence 222211 22 456788999999888887753 34455566666667777777776
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.38 Score=43.95 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=128.4
Q ss_pred CceeEEEEccCCeEEEee-cCCccceEEEEEcCCCCEEEEEEC---CCeEEEEECCCcceeeeeeecCc-cEEEEcCCCC
Q 019603 96 GESLRYLSMYDNRILRYF-KGHKERVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGL 170 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~-~~H~~~V~~l~~~~~~~~l~Sgs~---D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~ 170 (338)
.+.+.+.|....+..... .+. .-..++++|+++.++.+.. ++++.+.|..+++.......... .-++++|+|.
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~ 172 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGN 172 (381)
T ss_pred CCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCC
Confidence 467888886665554443 233 5567899999976654433 78999999888877666443322 4588999998
Q ss_pred EEE-EEEcCCeEEEEeCCCCCCC-CCeeEEecCCCCceEEEEEcCCCCEEEEEecC---CcEEEEEccCCeeEEEeeeCC
Q 019603 171 VFA-VAMEAGAIKLFDSRSYDKG-PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEP 245 (338)
Q Consensus 171 ~~~-~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d---~~i~i~~~~~~~~~~~~~~~~ 245 (338)
.+. +...++.+.++|....... ....... .....-..+.++|++.++.+.-.. +.+...|..++.....-....
T Consensus 173 ~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~ 251 (381)
T COG3391 173 KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG 251 (381)
T ss_pred eEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc
Confidence 554 4457899999996543211 0000000 112223457899999966555443 588999988776554311112
Q ss_pred CCCCCeeEEECCCCCEEEEE-cCCCcEEEEECCCCCeEeEeeCCC---CceEEEEEcCCC
Q 019603 246 SPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNI---GVVACLKWAPRR 301 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~h~---~~v~~l~~~p~~ 301 (338)
.. ....+.++|+|+++... +..+.+.+-|..+........... ..+..+++.+..
T Consensus 252 ~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 252 SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 22 35568999999998887 445889999998877776655333 245566666543
No 359
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.003 Score=51.66 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=91.6
Q ss_pred EEEEEECCCeEEEEECCCcce--eee-eeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceE
Q 019603 131 SFMSGSLDHSVRIWDLRVNAC--QGI-LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 207 (338)
Q Consensus 131 ~l~Sgs~D~~I~iWd~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 207 (338)
.+..-|.|+.|+-++++..+. ... +...+ ...-.-+.-+++|+.+|.+.+|....+... ...+ ..+.....+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~-~d~~-~s~~e~i~~ 106 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAH-SDRV-CSGEESIDL 106 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchH-HHhh-hccccccee
Confidence 345568889999998875432 111 11111 111223456788999999999986532110 0000 001111111
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE--cCCCcEEEEECCCCCeEeEe
Q 019603 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 208 ~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg--s~Dg~i~vWd~~~~~~~~~~ 285 (338)
.+.--.++.+..+++.++.|+-++...++... +..............+..+++++.. |.|..++.|++..-+
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g-~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~----- 180 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG-YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK----- 180 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceee-eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh-----
Confidence 11112234467788889999999987665432 2222211334444444445555555 555555555554321
Q ss_pred eCCCCceEEEEEcCCCceEEeecceEEEe-eeCCCCCCCCCCCCCcccc
Q 019603 286 NGNIGVVACLKWAPRRAMFVAASSVLSFW-IPNPSSNSTDESTDPQATV 333 (338)
Q Consensus 286 ~~h~~~v~~l~~~p~~~~l~s~s~~~~iw-~~~~~~~~~~~~~~~~~~~ 333 (338)
....+....++.......+.-.....| ..+..+..++..++..+++
T Consensus 181 --d~~~i~~~q~~~~~~~~~te~~~~d~d~D~d~~s~~~Krked~~a~~ 227 (238)
T KOG2444|consen 181 --DESPISSVQDIKADKVSDTENPSSDLDNDDDFFSKLDKRKEDGKADE 227 (238)
T ss_pred --ccCcchhhhhhhccccccccCcccccccccccccchhhhcccccccc
Confidence 123344444444444444432222333 2223344445555554443
No 360
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.76 E-value=0.53 Score=44.63 Aligned_cols=193 Identities=16% Similarity=0.176 Sum_probs=103.0
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCe----eeEE--EeecC-CeeEEecCccCCCCCceeEEEEccCCeEEE
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGA----DCVC--FTHHP-SSVICSTKYNLDSTGESLRYLSMYDNRILR 111 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~----~~~~--~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (338)
+..++.++.|+.+...|..+|+.+.......... ..+. ..... ..++.. ..++.+.-+|..+++.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~------~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG------TFDGRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe------cCCCeEEEEECCCCCEee
Confidence 4567778889999999999998765543221100 0000 00111 333332 224678888998998877
Q ss_pred eecCCccc-----eEE-EEEcCCCCEEEEEE---------CCCeEEEEECCCcceeeeeeecCc----------------
Q 019603 112 YFKGHKER-----VIS-LCMSPVNDSFMSGS---------LDHSVRIWDLRVNACQGILRLRGR---------------- 160 (338)
Q Consensus 112 ~~~~H~~~-----V~~-l~~~~~~~~l~Sgs---------~D~~I~iWd~~~~~~~~~~~~~~~---------------- 160 (338)
.+...... +.+ ..+. +..++.++ .++.+...|..+++..-.+.....
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred eecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 65433221 111 1121 24444443 468899999999887655443211
Q ss_pred -------cEEEEcCCCCEEEEEEcCC------------------eEEEEeCCCCCCCCCeeEEecCCC--------C-ce
Q 019603 161 -------PTVAFDQQGLVFAVAMEAG------------------AIKLFDSRSYDKGPFDTFLVGGDT--------A-EV 206 (338)
Q Consensus 161 -------~~~~~~~~~~~~~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~--------~-~i 206 (338)
....+++.+..+.+++.++ .+.-+|.++.+. ...+....+. . .+
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~--~W~~~~~~~~~~~~~~~s~p~~ 290 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV--KWFYQTTPHDLWDYDGPNQPSL 290 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE--EEEeeCCCCCCcccccCCCCeE
Confidence 0134444555666666554 566666655432 1111111110 0 01
Q ss_pred EEEEEcCCCC---EEEEEecCCcEEEEEccCCeeEEEee
Q 019603 207 CDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 207 ~~v~~sp~~~---~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
..+. .-++. .+++++.++.++-+|..+|+.+-.+.
T Consensus 291 ~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 291 ADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred Eecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 1110 01232 46677789999999999998776554
No 361
>PHA02713 hypothetical protein; Provisional
Probab=96.73 E-value=0.24 Score=47.69 Aligned_cols=147 Identities=6% Similarity=0.053 Sum_probs=72.0
Q ss_pred CCCEEEEEECCC-----eEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCC---------------------
Q 019603 128 VNDSFMSGSLDH-----SVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAG--------------------- 179 (338)
Q Consensus 128 ~~~~l~Sgs~D~-----~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg--------------------- 179 (338)
+++..+.||.++ ++..||.++++=...-.+... ......-+|.+++.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 567778888764 478899876532111111110 0111123566777776542
Q ss_pred --eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC------CcEEEEEccC-CeeEEEeeeCCCCCCC
Q 019603 180 --AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYG-GEKRCGFSLEPSPNTN 250 (338)
Q Consensus 180 --~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d------~~i~i~~~~~-~~~~~~~~~~~~~~~~ 250 (338)
.+..||.++........+.. ... ....+.+ +++.+++|+.+ ..+..||..+ ++......+.......
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~-~r~-~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWT-GTI-RPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cceEEEECCCCCeEeecCCCCc-ccc-cCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 35567755432211111000 000 0111112 46666666653 2356788776 4544322222221122
Q ss_pred eeEEECCCCCEEEEEcCCC--cEEEEECCCCC
Q 019603 251 TEATFTPDGQYVVSGSGDG--TLHAWNINTRN 280 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~Dg--~i~vWd~~~~~ 280 (338)
..+.+ +|+..+.||.|| ++..+|..+.+
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 22223 688888999888 67777776543
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.58 E-value=0.18 Score=36.81 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=41.5
Q ss_pred eEEEEEcC---CC-CEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeC
Q 019603 120 VISLCMSP---VN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 120 V~~l~~~~---~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 186 (338)
|+++++.. ++ +.|+.||.|..||+|+- .+.+..+...........-.+..|+-+.+.|+|-+|+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 55665543 33 47999999999999973 34444444333332222223357888889999999874
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.56 E-value=0.41 Score=40.79 Aligned_cols=203 Identities=14% Similarity=0.235 Sum_probs=102.2
Q ss_pred eeeccCCcceeEEEeecCCCEEEE-eeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVT-ASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s-~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
..+.+-..++++|+|+|+.+.|++ ....+.|.-.+. +|+.++.+.....
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~----------------------------- 64 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF----------------------------- 64 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS------------------------------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-----------------------------
Confidence 356677778999999998665554 555666655565 3565544322110
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc----e--eeeeee-------cCccEEEEc
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA----C--QGILRL-------RGRPTVAFD 166 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~----~--~~~~~~-------~~~~~~~~~ 166 (338)
+-.-+|++..++.++++--.++.+.+.++.... . ...+.+ .+-.-++++
T Consensus 65 ------------------~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 65 ------------------GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp ------------------SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred ------------------CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 112334444445455544456777777663211 0 011111 112458899
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEE--------ecCCCCceEEEEEcCC-CCEEEEEecCCcEEEEEccCCee
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL--------VGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
+.+..+.++-+....++|..+.... ...... .......++.+.++|. +++++.+...+.+..+| ..|+.
T Consensus 127 ~~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~ 204 (248)
T PF06977_consen 127 PKTNRLFVAKERKPKRLYEVNGFPG-GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRV 204 (248)
T ss_dssp TTTTEEEEEEESSSEEEEEEESTT--SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--E
T ss_pred CCCCEEEEEeCCCChhhEEEccccC-ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCE
Confidence 9888888888777777776553111 111100 0112345788899986 45666777778888888 56777
Q ss_pred EEEeeeCCCC-------CCCeeEEECCCCCEEEEEcCCCcEEEE
Q 019603 238 RCGFSLEPSP-------NTNTEATFTPDGQYVVSGSGDGTLHAW 274 (338)
Q Consensus 238 ~~~~~~~~~~-------~~~~~~~fs~~~~~l~sgs~Dg~i~vW 274 (338)
...+.+.... .....++|.++|.+.++ |+-...+++
T Consensus 205 ~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 205 VSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 6666665421 23567899999866555 455555544
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.56 E-value=0.63 Score=43.00 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=117.8
Q ss_pred eeEEEeecCCCEEEE-eeCCC----cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC------Cce
Q 019603 30 INSLDFHRKDDLLVT-ASDDD----SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST------GES 98 (338)
Q Consensus 30 V~~l~~s~~~~~l~s-~s~D~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 98 (338)
+....++|+|++|+- -+..| .+++.|+++|+.+......... ..+.|..++..++...... ... ...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~-~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDE-DQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECST-TTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCc-ccccccCCCCcE
Confidence 346789999997664 34444 4999999999876532222111 2267776666666543211 111 456
Q ss_pred eEEEEccCCeE--EEeecCCccc--eEEEEEcCCCCEEE-EEECC---CeEEEEECCCc----ceeeeeeecC--ccEEE
Q 019603 99 LRYLSMYDNRI--LRYFKGHKER--VISLCMSPVNDSFM-SGSLD---HSVRIWDLRVN----ACQGILRLRG--RPTVA 164 (338)
Q Consensus 99 i~~~~~~~~~~--~~~~~~H~~~--V~~l~~~~~~~~l~-Sgs~D---~~I~iWd~~~~----~~~~~~~~~~--~~~~~ 164 (338)
++.|.+.+... .-.+.+.... ...+..++++++++ +.+.. ..+.+-|+..+ .....+.... .....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 88888876532 2334433332 56788999999755 33333 34667777654 1122222221 11111
Q ss_pred EcCCCCEEEEEE---cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC---cEEEEEccCCeeE
Q 019603 165 FDQQGLVFAVAM---EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKR 238 (338)
Q Consensus 165 ~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~~~~~ 238 (338)
-...+.+++... ..+.+.-.++...........++ .+...+.-..+...+.++++....+ .+.+++...+...
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 122222332221 22444445554432211122222 2333222223334555666555433 5778887634443
Q ss_pred EEeeeCCCCCCCeeEEECCCCCE-EEEEc---CCCcEEEEECCCCCeE
Q 019603 239 CGFSLEPSPNTNTEATFTPDGQY-VVSGS---GDGTLHAWNINTRNEV 282 (338)
Q Consensus 239 ~~~~~~~~~~~~~~~~fs~~~~~-l~sgs---~Dg~i~vWd~~~~~~~ 282 (338)
....+.. .+.+..+...+++.. .++.+ .-.+++.+|+.+++..
T Consensus 363 ~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 363 REIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred eeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 3333332 122334443444433 22222 2346888888877653
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.53 E-value=0.54 Score=41.85 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred CeEEEEECCCc-----cee--eeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEE
Q 019603 139 HSVRIWDLRVN-----ACQ--GILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 211 (338)
Q Consensus 139 ~~I~iWd~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~ 211 (338)
|.|.++++... +.. ...... .++.++.+-+..++++. .+.+.+|++.... .+...-.......++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~-g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~--~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK-GPVTAICSFNGRLVVAV-GNKLYVYDLDNSK--TLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES-S-EEEEEEETTEEEEEE-TTEEEEEEEETTS--SEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec-CcceEhhhhCCEEEEee-cCEEEEEEccCcc--cchhhheecceEEEEEEec
Confidence 89999999873 221 112222 23444444344444444 4789999987543 1211111122334555554
Q ss_pred cCCCCEEEEEecCCcEEEEEccC-CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 212 SNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 212 sp~~~~i~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
. +.+++++...+.+.++.... +...........+.+++++.|-+++..++.+..+|.+.++...
T Consensus 138 ~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 138 F--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred c--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3 56899998888888775432 3333333333445678888888777799999999999999986
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.37 E-value=0.013 Score=35.66 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
+..+..++|+|...+||.|..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356889999999999999999999999999 4443
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.22 E-value=1.3 Score=42.86 Aligned_cols=232 Identities=11% Similarity=0.091 Sum_probs=108.2
Q ss_pred cCCCEEEEeeCC------CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc-CCCCCceeEEEEccCCeE
Q 019603 37 RKDDLLVTASDD------DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN-LDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 37 ~~~~~l~s~s~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~ 109 (338)
..+.+++.||.+ .++..+|..++.............. ......+..++...++. -...-.++..||...++-
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~-~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR-VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc-ccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 346677888887 4688999987754332211111111 11112233444443322 111224566777665543
Q ss_pred EE--eecCCccceEEEEEcCCCCEEEEEECCCe-----EEEEECCCcceeeeeeecC-ccE-EEEcCCCCEEEEEEcCC-
Q 019603 110 LR--YFKGHKERVISLCMSPVNDSFMSGSLDHS-----VRIWDLRVNACQGILRLRG-RPT-VAFDQQGLVFAVAMEAG- 179 (338)
Q Consensus 110 ~~--~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~-----I~iWd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~dg- 179 (338)
.. .+.......- .-.-+|...|.||.||. |-.||.++++-...-.+.. ... -...-+|.+.++|+.++
T Consensus 362 ~~~a~M~~~R~~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccce--eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 22 1221111111 11225778889999954 6778877665321111111 111 12234677777777553
Q ss_pred -----eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC-----cEEEEEccCCeeEEEeeeCCCCCC
Q 019603 180 -----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 180 -----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
.+..||..+........+... ........+ ++..++.||.++ .|..+|..+.+....-........
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~--R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTR--RSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccc--cccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 456677654332111111000 000111111 566666777665 367777776655433111111111
Q ss_pred CeeEEECCCCCEEEEEcCCCc-----EEEEECC
Q 019603 250 NTEATFTPDGQYVVSGSGDGT-----LHAWNIN 277 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~-----i~vWd~~ 277 (338)
.- + ..-+++..+.|+.||. |..||-.
T Consensus 516 ~g-~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 516 VG-V-VVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred cc-E-EEECCEEEEEecccCccccceeEEcCCC
Confidence 11 1 1225777888887773 5555544
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.20 E-value=0.8 Score=40.39 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=66.8
Q ss_pred ceEEEEEcCCCCEEEEEec-CCcEEEEEccC--Ce---eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC-cEEEEECC
Q 019603 205 EVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG--GE---KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-TLHAWNIN 277 (338)
Q Consensus 205 ~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~--~~---~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg-~i~vWd~~ 277 (338)
.-+.++||||++.++.+-+ .+.++.++... +. ....+.....+...-.++...+|.+-+++-.+| .|.+|+-.
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 3456899999987666654 47788776541 21 111112222233445567777888876555554 89999998
Q ss_pred CCCeEeEeeCCCCceEEEEEc-CCCceEEeec
Q 019603 278 TRNEVACWNGNIGVVACLKWA-PRRAMFVAAS 308 (338)
Q Consensus 278 ~~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~s 308 (338)
++++..+.-....+.+++|- |+.+.|...+
T Consensus 244 -G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 244 -GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred -CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 88988888777888888886 4444444433
No 369
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.18 E-value=0.02 Score=34.85 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=28.0
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEc
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDI 56 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~ 56 (338)
...|..+.|+|+.++|+.+..||.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999998
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.07 E-value=0.36 Score=35.21 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=60.0
Q ss_pred cCCC-CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 166 DQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 166 ~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
+.+| ..|++|+.|..||+|+-.. . ...+ .....++.+...+. ..++.+..+|+|-+|+.. .+.++.+
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~e-----~-~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~----~RlWRiK 78 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGDE-----I-VAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDRS----QRLWRIK 78 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCCc-----E-EEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeCc----ceeeeec
Confidence 4444 4789999999999997432 1 1111 23556777766655 568999999999999853 2344555
Q ss_pred CCCCCCeeEE-ECCCC---CEEEEEcCCCcEE
Q 019603 245 PSPNTNTEAT-FTPDG---QYVVSGSGDGTLH 272 (338)
Q Consensus 245 ~~~~~~~~~~-fs~~~---~~l~sgs~Dg~i~ 272 (338)
.... ++++. |..++ +-|++|=.+|.|-
T Consensus 79 SK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 SKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4433 44443 44333 3588888888764
No 371
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.02 E-value=0.0031 Score=58.79 Aligned_cols=203 Identities=13% Similarity=0.186 Sum_probs=115.5
Q ss_pred cceeEEEeecCC--CEEEEeeCCCcEEEEEcCCCe-e-EeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEE
Q 019603 28 GKINSLDFHRKD--DLLVTASDDDSVRLYDIVSAK-L-IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 28 ~~V~~l~~s~~~--~~l~s~s~D~~i~iWd~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
..+.|++++-+. .+++.|..+|.|-+-.+...- . .....++....++++|+.-...++.++- .--..+..+.+||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagl-dkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGL-DKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhh-hhhcccCCcccee
Confidence 446677665433 478889999999998764321 1 1122333445566666554334443321 1112345789999
Q ss_pred ccCC--eE--EEeecC-CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-eeeeeecCccEEEEcC-CCCEEEEEE
Q 019603 104 MYDN--RI--LRYFKG-HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRGRPTVAFDQ-QGLVFAVAM 176 (338)
Q Consensus 104 ~~~~--~~--~~~~~~-H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 176 (338)
+.++ .+ -..|.+ .-..+.+++|..+.+.+.+|...+.++++|+|.... ...+......-+.++| .+.++++ .
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs-~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS-N 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec-c
Confidence 9775 21 112222 444566888888888899999999999999984321 1111111223345566 5555554 4
Q ss_pred cCCeEEEEe-CCCCCCCCCeeEEec--CCCCceEEEEEcCCCC-EEEEEecC-CcEEEEEcc
Q 019603 177 EAGAIKLFD-SRSYDKGPFDTFLVG--GDTAEVCDIKFSNDGK-SMLLTTTN-NNIYVLDAY 233 (338)
Q Consensus 177 ~dg~i~i~d-~~~~~~~~~~~~~~~--~~~~~i~~v~~sp~~~-~i~~~~~d-~~i~i~~~~ 233 (338)
.||.|.+|| .+..+ .++...+-. .....+..++|+|... .+++...| ++|+.+++.
T Consensus 215 ~dg~iAiwD~~rnie-npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE-NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhc-cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 499999999 44322 222211110 1123478899999654 34444443 567888764
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.98 E-value=1.2 Score=40.29 Aligned_cols=241 Identities=14% Similarity=0.139 Sum_probs=109.2
Q ss_pred EcCCCeeEeEEeecccC-----eeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCC
Q 019603 55 DIVSAKLIKTTYHKKHG-----ADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN 129 (338)
Q Consensus 55 d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~ 129 (338)
|..+|-.+..+...... ..--+|..++..++..+.. .....+.+.|+.+++..+...+-.+...+..++|++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~---dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF---DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD 92 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T---TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc---CCCcceEEEEcccCEEEECccCCCCCccceEEecCC
Confidence 55566555444333221 1123455566666665431 233578899999998877655432333356677888
Q ss_pred CEEEEEECCCeEEEEECCCcceeeeeeecCcc----EEEEcCCCCEEEEEEc---C-------------------CeEEE
Q 019603 130 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQGLVFAVAME---A-------------------GAIKL 183 (338)
Q Consensus 130 ~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---d-------------------g~i~i 183 (338)
+.++-....+.|+.-|+++.+...+......- ....+.++..++..-. | ..|..
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 88877767789999999887754444443321 2233455555432211 0 11222
Q ss_pred EeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEec------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
.|+++.+ ... +-..+..+..+.|+|... .|..|-. |..|++.+..........+ +.....+..=-|.
T Consensus 173 idl~tG~---~~~--v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 173 IDLKTGE---RKV--VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWV 246 (386)
T ss_dssp EETTT-----EEE--EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-
T ss_pred EECCCCc---eeE--EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCccccccccc
Confidence 2333221 111 112355677899999655 4555543 2256666655444332221 1111234445699
Q ss_pred CCCCEEEE-----EcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEe
Q 019603 257 PDGQYVVS-----GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 257 ~~~~~l~s-----gs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s 306 (338)
|||..|.= ++.+..|.-.|..+++....... ....-+.-++|+.++|-
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEE
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEe
Confidence 99986543 34566788889988765433222 23445666788887654
No 373
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.91 E-value=2.1 Score=42.74 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=42.1
Q ss_pred CCcEEEEEccCCeeEEEeeeCCCCCCCe-------eEEECC-CCC---EEEEEcCCCcEEEEECCCCCeEeEe
Q 019603 224 NNNIYVLDAYGGEKRCGFSLEPSPNTNT-------EATFTP-DGQ---YVVSGSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 224 d~~i~i~~~~~~~~~~~~~~~~~~~~~~-------~~~fs~-~~~---~l~sgs~Dg~i~vWd~~~~~~~~~~ 285 (338)
.+.+.=.|..+|+.+-.|+...|+.+-. -+.+.. +|+ .++.++.+|.+++.|.++++.+-..
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 3456667788888777776655542221 122332 553 7899999999999999999876653
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.86 E-value=1.5 Score=40.55 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCEEE-EEECC----CeEEEEECCCcceee-eeeecCccEEEEcCCCCEEEEEEcCC-----------eE
Q 019603 119 RVISLCMSPVNDSFM-SGSLD----HSVRIWDLRVNACQG-ILRLRGRPTVAFDQQGLVFAVAMEAG-----------AI 181 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~-Sgs~D----~~I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg-----------~i 181 (338)
.+....++|++++++ +-+.. .+|++.|+.+++.+. .+.......+.|.+++..+.-...+. .+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 344678999999876 33333 459999999997643 22322222389999987665444222 24
Q ss_pred EEEeCCCCCCCCCeeEEecCC-CCc-eEEEEEcCCCCEEEEEecC----CcEEEEEccCC----eeEEEeeeCCCCCCCe
Q 019603 182 KLFDSRSYDKGPFDTFLVGGD-TAE-VCDIKFSNDGKSMLLTTTN----NNIYVLDAYGG----EKRCGFSLEPSPNTNT 251 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~~~~~-~~~-i~~v~~sp~~~~i~~~~~d----~~i~i~~~~~~----~~~~~~~~~~~~~~~~ 251 (338)
..+.+.+... -+..+.... ... ...+..++|+++++..... ..+++.+...+ .....+. .+......
T Consensus 205 ~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~ 281 (414)
T PF02897_consen 205 YRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEY 281 (414)
T ss_dssp EEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EE
T ss_pred EEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEE
Confidence 5555543221 112333322 222 6678899999998765443 35778887654 1111111 11112222
Q ss_pred eEEECCCCCEEE-E--EcCCCcEEEEECCCCCe---EeEeeCCCC--ceEEEEEcCCCceEEee
Q 019603 252 EATFTPDGQYVV-S--GSGDGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAA 307 (338)
Q Consensus 252 ~~~fs~~~~~l~-s--gs~Dg~i~vWd~~~~~~---~~~~~~h~~--~v~~l~~~p~~~~l~s~ 307 (338)
.+... .+.+++ | +..++.|..-++..... ...+-.|.. .+..+. ..+..|+..
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~ 342 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLS 342 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEE
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEE
Confidence 23222 343433 4 24456777778876652 325555555 344444 444444443
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.80 E-value=0.19 Score=48.56 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCCEEEEEec------CC--cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC-------
Q 019603 204 AEVCDIKFSNDGKSMLLTTT------NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD------- 268 (338)
Q Consensus 204 ~~i~~v~~sp~~~~i~~~~~------d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D------- 268 (338)
..+....++|+|+.+++... +. .+++.+. .+.... +. .+. ..+.-.|+|+|+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~-lt-~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQ-VL-EGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCccee-ee-cCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 35678899999998887762 33 4555554 232222 21 121 36678899999988776532
Q ss_pred -----CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 269 -----GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 269 -----g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
+.+++.++..+.... ...+.|..++|||||..+|...
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 233333443332222 2346799999999999777654
No 376
>PHA02713 hypothetical protein; Provisional
Probab=95.70 E-value=1.3 Score=42.85 Aligned_cols=173 Identities=8% Similarity=0.061 Sum_probs=83.2
Q ss_pred CCCEEEEEECC------CeEEEEECCCcceeeeeeecC-c-cEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCCCCCC
Q 019603 128 VNDSFMSGSLD------HSVRIWDLRVNACQGILRLRG-R-PTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPF 194 (338)
Q Consensus 128 ~~~~l~Sgs~D------~~I~iWd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~ 194 (338)
++..++.||.+ .++..||++++.-...-.+.. . ......-+|.+++.|+.++ .+..||.++......
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 56777888864 357788887664211111111 1 1122234567777777653 467788664322111
Q ss_pred eeEEecCCCCceEEEEEcCCCCEEEEEecC-----------------------CcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 195 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----------------------NNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 195 ~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----------------------~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
..+.. .......+.+ +++.+++||.+ +.+..||..+++....-.+.......
T Consensus 383 ~~mp~--~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~- 457 (557)
T PHA02713 383 PDMPI--ALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP- 457 (557)
T ss_pred CCCCc--ccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-
Confidence 00000 0001111222 56666677654 24677777766554322221111111
Q ss_pred eEEECCCCCEEEEEcCC------CcEEEEECCC---CCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 252 EATFTPDGQYVVSGSGD------GTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~D------g~i~vWd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
....-+|+..+.||.+ ..+..||..+ +..+..+.........+++ ++...+.|+
T Consensus 458 -~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 458 -GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHC 520 (557)
T ss_pred -cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEee
Confidence 1222356777777754 2467888775 3455555433333333333 566666665
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.066 Score=50.21 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=50.3
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCce-EEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEE
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV-CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 240 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i-~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~ 240 (338)
+.|+|.-..+|.+..+|.+.+..+. .++ +..+-+ +...+ .+++|.|||+.++++-.||+|++.|...+.....
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qR--lwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQR--LWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cce--eEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 5566766777777777776665543 111 112211 22234 4899999999999999999999999988866544
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.58 E-value=0.049 Score=44.75 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCC-CceE
Q 019603 215 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVA 293 (338)
Q Consensus 215 ~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~-~~v~ 293 (338)
+.-++.++.++.|++|+.......+.....+.......+.---++.+..++++||.||.|++.-.+.+....+|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 445888999999999976522111110111111111112222345578889999999999999888887777776 5666
Q ss_pred EEEEcCCCceEEee--c--ceEEEeeeC
Q 019603 294 CLKWAPRRAMFVAA--S--SVLSFWIPN 317 (338)
Q Consensus 294 ~l~~~p~~~~l~s~--s--~~~~iw~~~ 317 (338)
.+..+..+.+++.+ | ..++.|.+.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 66666666666666 3 356777643
No 379
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.57 E-value=0.39 Score=44.01 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=83.5
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCC----C
Q 019603 119 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP----F 194 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~----~ 194 (338)
.|+.++|.+...-|+.|-..|.|-||....++.-..-.........+.+ ...+++.-.+.|++...... +
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~di~~r~~~~~~~gf 76 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR------FSLNNSPGKLTDISDRAPPSLKEGF 76 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-SEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc------ccccCCCcceEEehhhCCccccccc
Confidence 5889999999999999999999999976544321100000000000000 01112223344543211111 1
Q ss_pred -eeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC------CCCCCeeEEEC-----CCC---
Q 019603 195 -DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------SPNTNTEATFT-----PDG--- 259 (338)
Q Consensus 195 -~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~------~~~~~~~~~fs-----~~~--- 259 (338)
-..++....+.|++++.| +=..++++..+|.+.|.|++....+..-.... ....++.+.|+ -|+
T Consensus 77 ~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred CchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 123344557889999997 55578888889999999998887776533332 23456677775 233
Q ss_pred CEEEEEcCCCcEEEEECC
Q 019603 260 QYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 260 ~~l~sgs~Dg~i~vWd~~ 277 (338)
-.|+.|...|.+.+|++.
T Consensus 156 i~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEe
Confidence 468889999999999885
No 380
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.51 E-value=1.9 Score=39.25 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=36.8
Q ss_pred CCeeEEECCCCCEEEEEcCC-------------------CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 249 TNTEATFTPDGQYVVSGSGD-------------------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~D-------------------g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
....++|.|||.+.++-+.. |.|.-++...++. ..+..-....+.|+|+|++.++++-.
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 35678999999887765521 3455555544433 33322223457899999999887643
No 381
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.38 E-value=2.3 Score=39.36 Aligned_cols=222 Identities=14% Similarity=0.225 Sum_probs=108.8
Q ss_pred EEeecCCCEEEEeeCC-----------CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 33 LDFHRKDDLLVTASDD-----------DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 33 l~~s~~~~~l~s~s~D-----------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
++..|.|..+|...++ ..|.||+.. |+.+.++.-....+..+.|.....-++.. .++.+++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~-------~dG~v~v 105 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQ-------SDGTVRV 105 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEE-------cCCEEEE
Confidence 4445655555555444 158888875 55666554444566667776543333322 2488999
Q ss_pred EEccCCe------EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEE-CCCcceeeee-ee-------cCcc----E
Q 019603 102 LSMYDNR------ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD-LRVNACQGIL-RL-------RGRP----T 162 (338)
Q Consensus 102 ~~~~~~~------~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd-~~~~~~~~~~-~~-------~~~~----~ 162 (338)
+++.... .+....-....|....+..+|-.++++ ++.+.+-+ .......+.+ .. +... .
T Consensus 106 y~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i 183 (410)
T PF04841_consen 106 YDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVI 183 (410)
T ss_pred EeCCCceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccc
Confidence 9886433 011111111222222222233233332 23333322 1111000000 00 0000 1
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEee
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
..++.+....+.....+.+.+.+-..... + ...+.+..|++||++++++.-..++.+.+....-.+....+.
T Consensus 184 ~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 184 PLLSSDRVVEILLANGETIYIIDENSFKQ-------I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred eEeecCcceEEEEecCCEEEEEEcccccc-------c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 12344444444445555666444322100 1 123579999999999999999999999998766555555555
Q ss_pred eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 243 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
... ......+.|+.++..++.- +..|.+..
T Consensus 256 ~~~-~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 256 TDS-KSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred cCc-CCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 442 2344567776654443332 23444444
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.34 E-value=1.6 Score=37.41 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=83.4
Q ss_pred ceEEEEEcCCCCEEEEEE---CCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEe-CCCCCCCCC
Q 019603 119 RVISLCMSPVNDSFMSGS---LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD-SRSYDKGPF 194 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~Sgs---~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~~~ 194 (338)
.+.+.+++++++.++... ....+.++..... .............+|++++.+......+...+++. .......+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 678889999998766544 3344444443221 11111222223357888888887777677766663 222111111
Q ss_pred eeEEecCCCCceEEEEEcCCCCEEEEEec---CCcEEEEEcc---CC---eeEEEeeeC-CCCCCCeeEEECCCCCEEEE
Q 019603 195 DTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAY---GG---EKRCGFSLE-PSPNTNTEATFTPDGQYVVS 264 (338)
Q Consensus 195 ~~~~~~~~~~~i~~v~~sp~~~~i~~~~~---d~~i~i~~~~---~~---~~~~~~~~~-~~~~~~~~~~fs~~~~~l~s 264 (338)
..........|..+.+||||..+++... ++.+++--+. .+ ......+.. .....++.++|.+++.+++.
T Consensus 104 -~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 104 -EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred -EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 0111111127999999999999887763 3566655332 22 011111211 22356789999999998777
Q ss_pred EcCCCc
Q 019603 265 GSGDGT 270 (338)
Q Consensus 265 gs~Dg~ 270 (338)
+...+.
T Consensus 183 ~~~~~~ 188 (253)
T PF10647_consen 183 GRSAGG 188 (253)
T ss_pred eCCCCC
Confidence 654443
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.33 Score=44.89 Aligned_cols=140 Identities=11% Similarity=0.149 Sum_probs=87.0
Q ss_pred EEEEEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCC-------CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC
Q 019603 131 SFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQG-------LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 202 (338)
Q Consensus 131 ~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 202 (338)
.+.++..-..++--|+..|+.+..+..+.. +.+.+.|+. ..-++|-.+..+.=||.|......+.. ..++
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~--~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV--VQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee--eecc
Confidence 345666667777788888888777776554 455555543 223567788888889988543321111 1111
Q ss_pred ----CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 203 ----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 203 ----~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
.....|..-..+ .+|++++.+|.|++||.........++..+ ..|..+..+.+|++|+... +..+.+-+.
T Consensus 426 qy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 122344444433 479999999999999973332233344333 4688899999999987654 456666654
No 384
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.32 E-value=1.6 Score=37.29 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=108.2
Q ss_pred ccceEEEEEcCCCCEEEEEECCC--eEEEEECCCcceeeeeeecCcc---EEEEcCCCCEEEEEEcCCeEEEEeCCCCCC
Q 019603 117 KERVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRP---TVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 191 (338)
Q Consensus 117 ~~~V~~l~~~~~~~~l~Sgs~D~--~I~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 191 (338)
+....++.|..++..+-|.|.-| .|+.+|+.+++......+.... -+... ++.++..-..++...+||..+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~- 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK- 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE-
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccce-
Confidence 34567788876777788888776 7899999999876665554321 12222 33455667788999999987543
Q ss_pred CCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC---CCCeeEEECCCCCEEEEEcCC
Q 019603 192 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 192 ~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~fs~~~~~l~sgs~D 268 (338)
....+...+ +-..++ .+++.++.+.....++++|..+-+.....+..... ...+.+.+- +|...|-.=..
T Consensus 122 -~~~~~~y~~---EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 122 -KIGTFPYPG---EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp -EEEEEE-SS---S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred -EEEEEecCC---cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence 233333322 333333 47778888888889999998766555443332211 234455554 56555555444
Q ss_pred CcEEEEECCCCCeEeEee------------CC---CCceEEEEEcCCCc-eEEee
Q 019603 269 GTLHAWNINTRNEVACWN------------GN---IGVVACLKWAPRRA-MFVAA 307 (338)
Q Consensus 269 g~i~vWd~~~~~~~~~~~------------~h---~~~v~~l~~~p~~~-~l~s~ 307 (338)
-.|..-|..+|+.+..+. .+ ....+.|||.|... ++++|
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 567777888998877653 01 35689999998765 55544
No 385
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.61 E-value=4.4 Score=38.82 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=132.2
Q ss_pred CEEEEeeCCCcEEEEEcCCCeeEeEEeeccc----CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecC
Q 019603 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKH----GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKG 115 (338)
Q Consensus 40 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 115 (338)
..++.++.|+.+...|..+|+.+........ .+...-. .....++......-....+.+.-+|..+|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~-v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPL-VVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcE-EECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4567788899999999999998765332111 0100000 0122333322100011235788888888876654321
Q ss_pred ---C----------------------------ccceE-EEEEcCCCCEEEEEE-----CCC-----------eEEEEECC
Q 019603 116 ---H----------------------------KERVI-SLCMSPVNDSFMSGS-----LDH-----------SVRIWDLR 147 (338)
Q Consensus 116 ---H----------------------------~~~V~-~l~~~~~~~~l~Sgs-----~D~-----------~I~iWd~~ 147 (338)
. ...|. ..++.|....+.-+. +++ .|---|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 0 01122 135555555444333 122 56666888
Q ss_pred CcceeeeeeecCc----------cE-EEEcCCCC---EEEEEEcCCeEEEEeCCCCCCC---CCe---eE--EecCCC--
Q 019603 148 VNACQGILRLRGR----------PT-VAFDQQGL---VFAVAMEAGAIKLFDSRSYDKG---PFD---TF--LVGGDT-- 203 (338)
Q Consensus 148 ~~~~~~~~~~~~~----------~~-~~~~~~~~---~~~~~~~dg~i~i~d~~~~~~~---~~~---~~--~~~~~~-- 203 (338)
+++..-.++.... +. +.+..+|. .++.+..+|.+.++|-++.+.. ++. .. .+...+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 8887655554211 11 22335665 6778889999999997654320 000 00 000000
Q ss_pred ----------------Cce-----------EEEEEcCCCCEEEEEecC--------------------------------
Q 019603 204 ----------------AEV-----------CDIKFSNDGKSMLLTTTN-------------------------------- 224 (338)
Q Consensus 204 ----------------~~i-----------~~v~~sp~~~~i~~~~~d-------------------------------- 224 (338)
..+ ..++++|+..++++...+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 000 125566666555444333
Q ss_pred -CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEE-EEEcCCCc
Q 019603 225 -NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC-LKWAPRRA 302 (338)
Q Consensus 225 -~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~-l~~~p~~~ 302 (338)
+.+.=+|+.+|+..-.++..... .-.. +.-.+..++.++.||.++++|.++++.+-.++-..+..-+ +.|.-+++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~--~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~ 516 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPL--WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGK 516 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCC--CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCE
Confidence 23444566666554433221110 0011 1124567778888999999999999998877644222222 44444555
Q ss_pred eE
Q 019603 303 MF 304 (338)
Q Consensus 303 ~l 304 (338)
+.
T Consensus 517 qY 518 (527)
T TIGR03075 517 QY 518 (527)
T ss_pred EE
Confidence 33
No 386
>PHA03098 kelch-like protein; Provisional
Probab=94.35 E-value=5 Score=38.52 Aligned_cols=194 Identities=10% Similarity=0.048 Sum_probs=81.3
Q ss_pred CCCEEEEeeCCC------cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEE
Q 019603 38 KDDLLVTASDDD------SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILR 111 (338)
Q Consensus 38 ~~~~l~s~s~D~------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (338)
++.+++.||.++ .+..||..+.+.............+ +....+..++...+......-..+..||..+++...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 456667777543 4677888776653211111000011 111123334433221111111346677766544322
Q ss_pred --eecCCccceEEEEEcCCCCEEEEEECC------CeEEEEECCCcceeeeeeecC-c-cEEEEcCCCCEEEEEEcC---
Q 019603 112 --YFKGHKERVISLCMSPVNDSFMSGSLD------HSVRIWDLRVNACQGILRLRG-R-PTVAFDQQGLVFAVAMEA--- 178 (338)
Q Consensus 112 --~~~~H~~~V~~l~~~~~~~~l~Sgs~D------~~I~iWd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~d--- 178 (338)
.+..-... .++ ...+++..+.||.+ ..+..||+.+++=...-.... . ...+...++.+++.|+..
T Consensus 373 ~~~lp~~r~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 373 EPPLIFPRYN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred CCCcCcCCcc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 11111111 111 12356677777743 468889987653211111100 0 011222345566665432
Q ss_pred -----CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEEccCCeeE
Q 019603 179 -----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKR 238 (338)
Q Consensus 179 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----~~i~i~~~~~~~~~ 238 (338)
..+..||.++........... . ......+.+ +++.++.|+.+ +.+.++|..+....
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~~-~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLNF-P-RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCCc-c-cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 236777766433211110000 0 001111222 55666666543 35777776665543
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=0.19 Score=50.22 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=71.7
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
+..++.++..|.+..+|.+.. -.++. ......++|++++|+.+|..++.|-.+|.|.+||+..+.....+...+++.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~--~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLH--QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhh--cCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 345667777777777776532 11110 111235679999999999999999999999999998877777666666553
Q ss_pred -CCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 249 -TNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 249 -~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.+..+.+..++..++++..-|. +|++.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 3344455566778888888886 67653
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.15 E-value=3.1 Score=36.60 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=73.8
Q ss_pred CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCC
Q 019603 115 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 192 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 192 (338)
.-...+..+..++++++++.++...-..-||.-...-..... ......+.|.|++.+.+++ ..|.++.=+..... .
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~-~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG-E 219 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE-E
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc-c
Confidence 345678888889999988888777777789864321111111 1223457889998766654 77777776511000 0
Q ss_pred CCeeEEec--CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe-eeCCCCCCCeeEEECCCCCEEEEEcCCC
Q 019603 193 PFDTFLVG--GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDG 269 (338)
Q Consensus 193 ~~~~~~~~--~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~fs~~~~~l~sgs~Dg 269 (338)
....-... .....+..+.|.|+++..++++ .+.+.. ....|+.-... ....-+.....+.|.++.+-++. +.||
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G 296 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDG 296 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCc
Confidence 00000000 1223478899998877666554 454443 33334332222 22334456788888876666655 4678
Q ss_pred cEEEE
Q 019603 270 TLHAW 274 (338)
Q Consensus 270 ~i~vW 274 (338)
.|--|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77554
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.08 E-value=2.8 Score=40.57 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=101.0
Q ss_pred ceeEEEEccCCeEEE--eecCCccceEEEEEcCCCCEEEEEECC------CeEEEEECCCcceeeeeeecCcc-EE-EEc
Q 019603 97 ESLRYLSMYDNRILR--YFKGHKERVISLCMSPVNDSFMSGSLD------HSVRIWDLRVNACQGILRLRGRP-TV-AFD 166 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~--~~~~H~~~V~~l~~~~~~~~l~Sgs~D------~~I~iWd~~~~~~~~~~~~~~~~-~~-~~~ 166 (338)
..+..+|..++.... .+. +.....++++. ++...++||.| .++..||.+.++=...-.+.... .. .-.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 467777776653322 222 22223334443 45778899999 56778888766521111111111 11 123
Q ss_pred CCCCEEEEEEcCCe-----EEEEeCCCCCCCCCeeEEecCCCCceEEEE-EcCCCCEEEEEecCC------cEEEEEccC
Q 019603 167 QQGLVFAVAMEAGA-----IKLFDSRSYDKGPFDTFLVGGDTAEVCDIK-FSNDGKSMLLTTTNN------NIYVLDAYG 234 (338)
Q Consensus 167 ~~~~~~~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~-~sp~~~~i~~~~~d~------~i~i~~~~~ 234 (338)
-+|.+.++|+.||. +.-||.++.......... ....... ..-+|+.+++||.++ .+..||..+
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-----~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-----TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCC-----cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 46778888888864 555665543332211111 1111111 112677777777543 567788777
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc-----EEEEECCC--CCeEeEeeCCCCceEEEEEcCCCceEEee
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-----LHAWNINT--RNEVACWNGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~-----i~vWd~~~--~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
+.....-++........ ++ .-++...+.||.|+. |..+|..+ +..+..++.....+....+ ++...+.|
T Consensus 454 ~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vG 529 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVG 529 (571)
T ss_pred CceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEe
Confidence 76554332221111111 22 225777788887763 77788764 3444444444343333332 34455555
Q ss_pred c
Q 019603 308 S 308 (338)
Q Consensus 308 s 308 (338)
+
T Consensus 530 G 530 (571)
T KOG4441|consen 530 G 530 (571)
T ss_pred c
Confidence 4
No 390
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.02 E-value=3.5 Score=35.28 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=34.9
Q ss_pred ccccceeeccCCcc--eeEEEeecCCCEEEEeeCCC--cEEEEEcCCCeeEeEE
Q 019603 16 SMAMAAIFSDFGGK--INSLDFHRKDDLLVTASDDD--SVRLYDIVSAKLIKTT 65 (338)
Q Consensus 16 ~~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~s~D~--~i~iWd~~~~~~~~~~ 65 (338)
.|.-+..+ .|... ..++.|..+|.++-|.|.-| .|+.+|+.+++.+...
T Consensus 32 ~~~vv~~y-pHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~ 84 (264)
T PF05096_consen 32 SYEVVETY-PHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV 84 (264)
T ss_dssp EEEEEEEE-E--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE
T ss_pred eeEEEEEC-CCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE
Confidence 45555565 55544 34788988899999988766 6999999999876543
No 391
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.01 E-value=3.7 Score=39.78 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=68.8
Q ss_pred cCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE--CCCCCEEEEEcCCCcEEEEECC---------CCC
Q 019603 212 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF--TPDGQYVVSGSGDGTLHAWNIN---------TRN 280 (338)
Q Consensus 212 sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f--s~~~~~l~sgs~Dg~i~vWd~~---------~~~ 280 (338)
+.-++..++.+....+.|||...+.......+ .....|.++.| .|+|+.+++.|-...|.++--. +..
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 33444444444556799999887753332222 23356777765 5899999999999999998542 122
Q ss_pred eEeEe--eCCC-CceEEEEEcCCCceEEeecceEEEee
Q 019603 281 EVACW--NGNI-GVVACLKWAPRRAMFVAASSVLSFWI 315 (338)
Q Consensus 281 ~~~~~--~~h~-~~v~~l~~~p~~~~l~s~s~~~~iw~ 315 (338)
.++.+ ..|. ..|.+..|.++|.++++++..+-|..
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 33333 3444 57899999999999998887777763
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.83 E-value=5.3 Score=36.70 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=60.1
Q ss_pred eEEEeecCCCEEEEeeC--------------------CCcEEEEEcCCCeeEeEEeecccC--eeeEEEeecCCeeEEec
Q 019603 31 NSLDFHRKDDLLVTASD--------------------DDSVRLYDIVSAKLIKTTYHKKHG--ADCVCFTHHPSSVICST 88 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~--------------------D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 88 (338)
+...|.|.-+.++|..+ -+++.+||+.+.+.++++.....+ ..-+.|.++|.......
T Consensus 184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv 263 (461)
T PF05694_consen 184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV 263 (461)
T ss_dssp --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence 45667787777887764 367999999999998887654322 34577888876543221
Q ss_pred CccCCCCCceeEEEEccCCeE----EEeec-----------------CCccceEEEEEcCCCCEEE-EEECCCeEEEEEC
Q 019603 89 KYNLDSTGESLRYLSMYDNRI----LRYFK-----------------GHKERVISLCMSPVNDSFM-SGSLDHSVRIWDL 146 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~----~~~~~-----------------~H~~~V~~l~~~~~~~~l~-Sgs~D~~I~iWd~ 146 (338)
...+ +....+.+...+++- +-.+. .-..-|+.+.+|.|+++|. |+=.+|.||.||+
T Consensus 264 g~aL--ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 264 GCAL--SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EEE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEec--cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 1111 112233333233331 11111 1135589999999999875 6668999999998
Q ss_pred CCc
Q 019603 147 RVN 149 (338)
Q Consensus 147 ~~~ 149 (338)
...
T Consensus 342 SDP 344 (461)
T PF05694_consen 342 SDP 344 (461)
T ss_dssp SST
T ss_pred CCC
Confidence 654
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.73 E-value=4 Score=34.96 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=81.1
Q ss_pred cEEEEcCCCCEEEEEE-cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEE-ccCCeeE
Q 019603 161 PTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD-AYGGEKR 238 (338)
Q Consensus 161 ~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~-~~~~~~~ 238 (338)
...++++++..++... .++.-.+|-.+... .....+ . ...+..-.|++++....+...+....++. ...+...
T Consensus 27 ~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-c--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3467888888776555 22233333322211 111111 1 22566778999977666655555555553 2333222
Q ss_pred E-EeeeCCCCCCCeeEEECCCCCEEEEEc---CCCcEEEEECC---CC------CeEeEeeCCCCceEEEEEcCCCceEE
Q 019603 239 C-GFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNIN---TR------NEVACWNGNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 239 ~-~~~~~~~~~~~~~~~fs~~~~~l~sgs---~Dg~i~vWd~~---~~------~~~~~~~~h~~~v~~l~~~p~~~~l~ 305 (338)
. ..........|+.+.+||||..+|--. .++.|+|=-+. .+ ............+..++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 111111112789999999999876544 45778777654 22 11122223356889999999999888
Q ss_pred eec
Q 019603 306 AAS 308 (338)
Q Consensus 306 s~s 308 (338)
.+.
T Consensus 182 ~~~ 184 (253)
T PF10647_consen 182 LGR 184 (253)
T ss_pred EeC
Confidence 876
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.70 E-value=4.2 Score=35.15 Aligned_cols=192 Identities=9% Similarity=0.094 Sum_probs=117.3
Q ss_pred ecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc---cEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 019603 113 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSRSY 189 (338)
Q Consensus 113 ~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 189 (338)
+.|-++.|.++.|+|+.+.|.+...-..-.+|=...|+.+.++.+.+. ..+.+-.+|.+.++--.++.+.++-+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445556699999999999988888888888887778888888887553 34566666666666667777777654321
Q ss_pred CC-CC--CeeEEec--CC-CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee-CCC-------CCCCeeEEE
Q 019603 190 DK-GP--FDTFLVG--GD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EPS-------PNTNTEATF 255 (338)
Q Consensus 190 ~~-~~--~~~~~~~--~~-~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~-~~~-------~~~~~~~~f 255 (338)
.. .. ...+.++ .+ +...-.++|+|..+.+.+.-..+-+.|+....+........ ..+ -..+..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 10 00 0011111 12 45567799999999999888888888876543321100000 000 023455677
Q ss_pred CC-CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCC---------CceEEEEEcCCCceEE
Q 019603 256 TP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFV 305 (338)
Q Consensus 256 s~-~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~l~ 305 (338)
++ .+.+|+-+.+++.+.--|.. +..+..+.-+. ..--.|+..++|...+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 75 45667777888888777775 34444433221 1224567777766433
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.52 E-value=1.9 Score=37.03 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=48.1
Q ss_pred EEECCCCCEEEEEcCC-----CcEEEEECCCC-CeEeEeeCCCCceEEEEEcCCCceEEeecceEEEe
Q 019603 253 ATFTPDGQYVVSGSGD-----GTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 314 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~D-----g~i~vWd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw 314 (338)
=.|||||.+|+..-.| |.|=|||.+.+ ..+..|..|.-.-..+.|.+||+.++.+.+-|+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth 186 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH 186 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence 3599999999875333 57999999854 56778888877778899999999999886644433
No 396
>PHA03098 kelch-like protein; Provisional
Probab=93.51 E-value=5.7 Score=38.11 Aligned_cols=173 Identities=12% Similarity=0.122 Sum_probs=76.7
Q ss_pred eeEEEEccCCeEEEe--ecCCccceEEEEEcCCCCEEEEEECC-----CeEEEEECCCcceeeeeeec-Cc-cEEEEcCC
Q 019603 98 SLRYLSMYDNRILRY--FKGHKERVISLCMSPVNDSFMSGSLD-----HSVRIWDLRVNACQGILRLR-GR-PTVAFDQQ 168 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~--~~~H~~~V~~l~~~~~~~~l~Sgs~D-----~~I~iWd~~~~~~~~~~~~~-~~-~~~~~~~~ 168 (338)
.+..+|..+++.... +.........+. .+++.++.||.+ ..+..||..+++=...-.+. .. .......+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC
Confidence 466777766554221 111111112222 256677788876 35777887665321111110 00 11112234
Q ss_pred CCEEEEEEcC------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC--------CcEEEEEccC
Q 019603 169 GLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYG 234 (338)
Q Consensus 169 ~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d--------~~i~i~~~~~ 234 (338)
+.+++.|+.+ +.+..||..+........... ... ....+ ..+++.++.||.+ +.+.+||..+
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~-~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHY-GGCAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-ccc-CceEE--EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 5666666521 356777765432211110000 000 11111 2245556666543 2378888776
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC-----CcEEEEECCC
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINT 278 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D-----g~i~vWd~~~ 278 (338)
++....-...........+.+ +++.++.||.+ ..|.++|..+
T Consensus 466 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 466 NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 655432111111111111222 56677777654 3567776654
No 397
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.43 E-value=0.1 Score=51.09 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=67.7
Q ss_pred cceeeccCCcceeEEEeecC-CCEEEEeeCCCcEEEEEcC--CCeeE-----eEEeecccCeeeEEEeec-CCeeEEecC
Q 019603 19 MAAIFSDFGGKINSLDFHRK-DDLLVTASDDDSVRLYDIV--SAKLI-----KTTYHKKHGADCVCFTHH-PSSVICSTK 89 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~--~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 89 (338)
....++|+.|.|-.+.|-.. -..++ -.=|.+-+||+. .|+.. +........+..+.|.+. .....
T Consensus 124 ~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~---- 197 (1283)
T KOG1916|consen 124 HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVY---- 197 (1283)
T ss_pred HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccce----
Confidence 34566788999999999532 12222 233678899874 34422 222222223332322211 11111
Q ss_pred ccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCE-EEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCC
Q 019603 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ 168 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~-l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
.++...++.++++...+... ..+++|...++.++|-..|-. +.+ ++||
T Consensus 198 ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------------lSpD 246 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------------LSPD 246 (1283)
T ss_pred eeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee------------------------------eCCC
Confidence 11233456777776654322 456678877776665433321 111 4666
Q ss_pred CCEEEEEEcCCeEEEEe
Q 019603 169 GLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d 185 (338)
|..++.++.||.++.|.
T Consensus 247 Gtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 247 GTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred CcEEEEeecCCccceee
Confidence 66777777777777665
No 398
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.34 E-value=5.3 Score=35.16 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=56.0
Q ss_pred ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 199 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 199 ~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.......+..+.-+++|++++++...+-..-|+.- ...-..+. ......+..+.|+|++.+.+.+ ..|.|+.=+..
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G-~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~- 215 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG-QTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP- 215 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T-
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCC-CccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCC-
Confidence 33445668888889999977777554444455532 11122222 2234578889999998876654 88889887721
Q ss_pred CCeEeEee-------CCCCceEEEEEcCCCceEEeecc
Q 019603 279 RNEVACWN-------GNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 279 ~~~~~~~~-------~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
.....+. .-.-.+..++|.|++...|+|++
T Consensus 216 -~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 216 -DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp -TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred -CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 1222222 12234789999999998888763
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.32 E-value=1.3 Score=40.61 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=57.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC--CCeeEE---------EC-----CCCCEEEE
Q 019603 201 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN--TNTEAT---------FT-----PDGQYVVS 264 (338)
Q Consensus 201 ~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~---------fs-----~~~~~l~s 264 (338)
.....+..+..+|.+++.++...-|+|.++|...+..++.+.+.+... ++.... .+ ....+|+-
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 345568889999999988887778999999998887766555443221 000000 00 01123443
Q ss_pred -EcCCCcEEEEECCCCCeEeEeeC
Q 019603 265 -GSGDGTLHAWNINTRNEVACWNG 287 (338)
Q Consensus 265 -gs~Dg~i~vWd~~~~~~~~~~~~ 287 (338)
+-.-|.|.||.+..+.++..+.-
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 45688999999999999887753
No 400
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.70 E-value=6 Score=34.07 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=81.9
Q ss_pred CCCEEEEEECCCeEEEEECC-CcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeE---------
Q 019603 128 VNDSFMSGSLDHSVRIWDLR-VNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--------- 197 (338)
Q Consensus 128 ~~~~l~Sgs~D~~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~--------- 197 (338)
.++.|+-|..+| +.++++. ...............+..-++-..+++- .|+.+.++++...........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccc
Confidence 467889998888 8999983 2222222222223334444444443333 459999999765433221000
Q ss_pred -EecCCCCceEEEE--EcCCCCEEEEEecCCcEEEEEccCCeeE--EEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEE
Q 019603 198 -LVGGDTAEVCDIK--FSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 272 (338)
Q Consensus 198 -~~~~~~~~i~~v~--~sp~~~~i~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~ 272 (338)
..-.....+..++ -.+.+...++....+++.+|........ ..++...-+..+..++|. +..|+.|..+ ...
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~ 160 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFY 160 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceE
Confidence 0001222344333 2234556666777779988876543111 111112223567778887 5566666544 477
Q ss_pred EEECCCCCeEeEe
Q 019603 273 AWNINTRNEVACW 285 (338)
Q Consensus 273 vWd~~~~~~~~~~ 285 (338)
+.|+.++.....+
T Consensus 161 ~idl~~~~~~~l~ 173 (275)
T PF00780_consen 161 LIDLNTGSPSELL 173 (275)
T ss_pred EEecCCCCceEEe
Confidence 7888876554443
No 401
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.14 E-value=9 Score=34.82 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=72.3
Q ss_pred ceEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--cceee--eee--ecCccEEEEcCCCCEEEEEEcCCe
Q 019603 119 RVISLCMSPVNDSFMSGS-----------LDH-SVRIWDLRV--NACQG--ILR--LRGRPTVAFDQQGLVFAVAMEAGA 180 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~Sgs-----------~D~-~I~iWd~~~--~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~dg~ 180 (338)
....++|.++|+.+++-. ..+ .|.+++-.. ++..+ .+. +....-+.+.++| +++ +.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 446678888888776642 223 677776432 23221 221 1112336777888 444 334333
Q ss_pred EEEEeCCCCC-CC-CCeeEEe--cC----CCCceEEEEEcCCCCEEEEEecC-------------------CcEEEEEcc
Q 019603 181 IKLFDSRSYD-KG-PFDTFLV--GG----DTAEVCDIKFSNDGKSMLLTTTN-------------------NNIYVLDAY 233 (338)
Q Consensus 181 i~i~d~~~~~-~~-~~~~~~~--~~----~~~~i~~v~~sp~~~~i~~~~~d-------------------~~i~i~~~~ 233 (338)
.++.|..... .. ....+.. .. .......+.|.|||.++++.+.. +.+..++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3333432111 11 1111111 11 12336678999999876655521 335555554
Q ss_pred CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC
Q 019603 234 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D 268 (338)
+++. ..+. .+. .....++|+|+|+++++-..+
T Consensus 173 g~~~-e~~a-~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKL-RVVA-HGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeE-EEEe-cCc-CCCccceECCCCCEEEEccCC
Confidence 4332 1121 222 234678999999998775433
No 402
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.00 E-value=15 Score=37.14 Aligned_cols=101 Identities=11% Similarity=0.080 Sum_probs=64.1
Q ss_pred ceEEEEEcCC-CCEEEEEec----------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEE
Q 019603 205 EVCDIKFSND-GKSMLLTTT----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 273 (338)
Q Consensus 205 ~i~~v~~sp~-~~~i~~~~~----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~v 273 (338)
.+..+.|..| +.++++|+. .|.+.+|....++.........-.+.+.++. --+|++||.= +..|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkllA~I--n~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGKLLAGI--NQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCeEEEec--CcEEEE
Confidence 3566678777 667777653 2456666554422222111111112222221 1267887654 458999
Q ss_pred EECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 274 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 274 Wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
+++.+.+.++.-.+|...+..|...-.+..++.|+
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence 99999878777778888899999999999999998
No 403
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.89 E-value=8.8 Score=34.16 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=144.4
Q ss_pred CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC--CCC--CceeEEEEccCCeEEEee--cC-Ccc---
Q 019603 49 DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL--DST--GESLRYLSMYDNRILRYF--KG-HKE--- 118 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~i~~~~~~~~~~~~~~--~~-H~~--- 118 (338)
+.+.++|..+++.+..+.....+ .+.+++++..++.+..+.- ..+ ...+.+||..+......+ .. |..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47899999999887665433222 2345666666665433211 000 135889999887765533 22 121
Q ss_pred -ceEEEEEcCCCCEEE--EEECCCeEEEEECCCcceeeeeeecCccEEEEcCC-CCEEEEEEcCCeEEEEeCCCCCCCCC
Q 019603 119 -RVISLCMSPVNDSFM--SGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPF 194 (338)
Q Consensus 119 -~V~~l~~~~~~~~l~--Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~ 194 (338)
....++++.++++++ =.+--..|.|-|+..++....+...++-.+ -|. ..-|.+-+.||.+.-+.+....+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE--EecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 222357778888654 334446788888888887776666554322 221 13577778888888776653211110
Q ss_pred e-eEEecCCCCce-EEEEEcCCCCEEEEEecCCcEEEEEccCCeeEE--EeeeCC--------CCCCCeeEEECCCCCEE
Q 019603 195 D-TFLVGGDTAEV-CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC--GFSLEP--------SPNTNTEATFTPDGQYV 262 (338)
Q Consensus 195 ~-~~~~~~~~~~i-~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~--~~~~~~--------~~~~~~~~~fs~~~~~l 262 (338)
. ..........+ ..-.++..+..++..+.+|.|+-.++....... .+.+.. .++.-.-+++++....|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 0 00111112211 122344455667778889999998876554322 222110 01222347787765554
Q ss_pred EEE---cCCC-------cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEeec---ceEEEeeeC
Q 019603 263 VSG---SGDG-------TLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPN 317 (338)
Q Consensus 263 ~sg---s~Dg-------~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s---~~~~iw~~~ 317 (338)
+.- +.++ .|-++|+.+++++..+... ..+.+|+.+.+.. .|.+.+ +.+.++...
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 442 2222 3777788899999998742 4578999998765 554433 467777554
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.63 E-value=13 Score=35.65 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=60.2
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc-Ceee-EEE-------eecCCeeEEecCccCCCCCceeEEEEccCCeE
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH-GADC-VCF-------THHPSSVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
+..|+.++.++.|.-.|..+|+.+........ .... .++ ......++.. ..++.+.-+|..+|+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~------t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFG------TLDARLVALDAKTGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEE------cCCCEEEEEECCCCCE
Confidence 55777788889999999999998766543211 1110 000 1112233332 2246788888888888
Q ss_pred EEeecC--Ccc--ceEEEEEcCCCCEEEEEE------CCCeEEEEECCCcceeee
Q 019603 110 LRYFKG--HKE--RVISLCMSPVNDSFMSGS------LDHSVRIWDLRVNACQGI 154 (338)
Q Consensus 110 ~~~~~~--H~~--~V~~l~~~~~~~~l~Sgs------~D~~I~iWd~~~~~~~~~ 154 (338)
+....- +.. .+++--.-.++ .++.++ .++.|..+|.++++.+-.
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 765432 211 12211000133 444433 378999999999876543
No 405
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.39 E-value=5 Score=30.40 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=39.5
Q ss_pred ceEEEE---EcCC-CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE---CCCCCEEEEEcCCCcEEEEECC
Q 019603 205 EVCDIK---FSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF---TPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 205 ~i~~v~---~sp~-~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f---s~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.|++++ |.|+ ++-++..++...+..||...+..+.-.. -+..+.++.+ .....-|+-.+.+..|+-+|..
T Consensus 49 ~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 49 EITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred ceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 355543 4332 3446666677889999987665433111 1234555544 3323345555567788888775
Q ss_pred C
Q 019603 278 T 278 (338)
Q Consensus 278 ~ 278 (338)
-
T Consensus 126 G 126 (136)
T PF14781_consen 126 G 126 (136)
T ss_pred C
Confidence 3
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.36 E-value=1.2 Score=37.24 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=43.1
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeE-------ee-------CCCCceEEEEEcCCCceEEeec
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-------WN-------GNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~-------~~-------~h~~~v~~l~~~p~~~~l~s~s 308 (338)
+.+..++.+|++-..+|.+++||+.+++.+.. +. .....|..+..+.+|.-+++-+
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 33556789999999999999999998776432 22 3567888999998888777654
No 407
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.19 E-value=1.2 Score=42.79 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=42.6
Q ss_pred CCCCEEEEEecCCcEEEEEccC----CeeEEEeeeC--------------------CCCCCCeeEEECC----CCCEEEE
Q 019603 213 NDGKSMLLTTTNNNIYVLDAYG----GEKRCGFSLE--------------------PSPNTNTEATFTP----DGQYVVS 264 (338)
Q Consensus 213 p~~~~i~~~~~d~~i~i~~~~~----~~~~~~~~~~--------------------~~~~~~~~~~fs~----~~~~l~s 264 (338)
++...++++..||.+..+.... +......... ........+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3555677777888877776543 1111111100 0012334456666 7789999
Q ss_pred EcCCCcEEEEECCCCCeEeEe
Q 019603 265 GSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 265 gs~Dg~i~vWd~~~~~~~~~~ 285 (338)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.13 E-value=13 Score=34.47 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=79.1
Q ss_pred CEEEEEECCCeEEEEECCCccee--ee-eeec-CccEEE-----EcC-CCCEEEEEEcCCeEEEEeCCCCCCC-----CC
Q 019603 130 DSFMSGSLDHSVRIWDLRVNACQ--GI-LRLR-GRPTVA-----FDQ-QGLVFAVAMEAGAIKLFDSRSYDKG-----PF 194 (338)
Q Consensus 130 ~~l~Sgs~D~~I~iWd~~~~~~~--~~-~~~~-~~~~~~-----~~~-~~~~~~~~~~dg~i~i~d~~~~~~~-----~~ 194 (338)
.+|+.||..|.+|||+...+... .. ++.. ..+++. |.+ .....++.-..+++-+|.+...... ..
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~ 117 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQY 117 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEE
Confidence 58999999999999998654321 11 1111 123322 212 2223334466778888876321110 01
Q ss_pred eeEEecCCCCc--eEEEEEcC----C-CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 195 DTFLVGGDTAE--VCDIKFSN----D-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 195 ~~~~~~~~~~~--i~~v~~sp----~-~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
...+...|.-. ...+.+-| . ..++.+-+.||.+.+++-+.-...+.+.....+++ ++|++.-..|++++.
T Consensus 118 ~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 118 QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCCEEEEecC
Confidence 11111112111 12222222 2 24678888999999998654332222222222333 788888899999999
Q ss_pred CCcEEEEEC
Q 019603 268 DGTLHAWNI 276 (338)
Q Consensus 268 Dg~i~vWd~ 276 (338)
+..+..+.+
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 989998876
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=3.8 Score=41.82 Aligned_cols=142 Identities=12% Similarity=0.107 Sum_probs=83.6
Q ss_pred EEcCCCCEEEEEE--cCCeEEEEeCCCCCCCCCeeE-Ee------cCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEcc
Q 019603 164 AFDQQGLVFAVAM--EAGAIKLFDSRSYDKGPFDTF-LV------GGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAY 233 (338)
Q Consensus 164 ~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~-~~------~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~ 233 (338)
...+|+...++.. ++-.|..||++.......... .+ .....-..++.|+|.-. ..+++..|+.+++..+.
T Consensus 107 v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~ 186 (1405)
T KOG3630|consen 107 VCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTK 186 (1405)
T ss_pred EeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhh
Confidence 3445555444443 334778899886533211110 00 01122355678888643 45677778888887543
Q ss_pred CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe---eC-CCCceEEEEEcCCCceEEeec
Q 019603 234 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW---NG-NIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~---~~-h~~~v~~l~~~p~~~~l~s~s 308 (338)
...... .-.......++++|+|.|++++.|-..|++.-|.-.- +....+ .. ....|.||.|-....+++.-+
T Consensus 187 ~~~~~v--~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 187 QLAQNV--TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred hhhhhh--cccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 221111 0012234678999999999999999999988776532 211111 11 147899999988888877654
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.55 E-value=2.5 Score=43.11 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCEEEEEecCC--cEEEEEccCCeeEE-----Eeee----CCCCCCCeeEEECCCCC-EEEEEcCCCcEEE
Q 019603 206 VCDIKFSNDGKSMLLTTTNN--NIYVLDAYGGEKRC-----GFSL----EPSPNTNTEATFTPDGQ-YVVSGSGDGTLHA 273 (338)
Q Consensus 206 i~~v~~sp~~~~i~~~~~d~--~i~i~~~~~~~~~~-----~~~~----~~~~~~~~~~~fs~~~~-~l~sgs~Dg~i~v 273 (338)
+..+...+|+...++....+ .|+.||+.+-.... .+.. ........++.|+|.-. ..+....|+.|+|
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 44455566766544433333 67888875321110 0100 11122334556776543 3556678999999
Q ss_pred EECCCCCe-EeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeCCCCCC
Q 019603 274 WNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNS 322 (338)
Q Consensus 274 Wd~~~~~~-~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~~~~~~ 322 (338)
..+..... +..+. -....+|+.|+|.|.+++.|-....+-++-|..+.
T Consensus 183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei 231 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI 231 (1405)
T ss_pred hhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccce
Confidence 98875433 22322 34678999999999999999866555565555443
No 411
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=8.8 Score=31.58 Aligned_cols=173 Identities=13% Similarity=0.186 Sum_probs=85.4
Q ss_pred CCCEEEEEECC--CeEEEEECCCcceeeeeeecCccEE--EEcC-CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC
Q 019603 128 VNDSFMSGSLD--HSVRIWDLRVNACQGILRLRGRPTV--AFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 202 (338)
Q Consensus 128 ~~~~l~Sgs~D--~~I~iWd~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 202 (338)
++.++.|.|.= ..|++||+++++.+........... .+.. ...+...-..+|....+|.++..+ +..+...|+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~--lg~~~y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE--LGRFSYEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh--hcccccCCc
Confidence 45666666643 4689999998876554444321111 1111 123455667888888888766443 222222222
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEE--eeeCCCC-CCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~-~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
-. ....|++.+..+.....++.-|..+-..... ....+.+ ...+.+.|- +|...|-.=.+-.|..-+..+|
T Consensus 133 ---GW--gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 133 ---GW--GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred ---ce--eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 12 2223566666665555555555432211111 1111111 011222221 3444443333333444455566
Q ss_pred CeEeEee------------CCCCceEEEEEcCCC-ceEEeec
Q 019603 280 NEVACWN------------GNIGVVACLKWAPRR-AMFVAAS 308 (338)
Q Consensus 280 ~~~~~~~------------~h~~~v~~l~~~p~~-~~l~s~s 308 (338)
+.+..+. .|....+.|++-|++ +++++|-
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 6554432 456678899999987 5666653
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.41 E-value=1.3 Score=26.20 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=23.0
Q ss_pred cceEEEEEcCCC---CEEEEEECCCeEEEEECCC
Q 019603 118 ERVISLCMSPVN---DSFMSGSLDHSVRIWDLRV 148 (338)
Q Consensus 118 ~~V~~l~~~~~~---~~l~Sgs~D~~I~iWd~~~ 148 (338)
+.|.++.|+|.. ..|+-+-.-+.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357888898754 3677666778889999885
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.84 E-value=2.6 Score=35.21 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=47.8
Q ss_pred EcCCCCEEEEEecCCcEEEEEccCCeeEEEe----eeC--------CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF----SLE--------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 211 ~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~----~~~--------~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
+...++++++.+.+|.+++||+..++....- .+. .....+..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4447889999999999999999877654321 111 2334677788888888887765 5788888875
No 414
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.78 E-value=6.3 Score=36.26 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=88.8
Q ss_pred EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee--eeeeecCccE-------EEEcCCCCEEEEEEcCCe
Q 019603 110 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ--GILRLRGRPT-------VAFDQQGLVFAVAMEAGA 180 (338)
Q Consensus 110 ~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~dg~ 180 (338)
+..+..-...|..+-..|+++.+..-+. .++.++++.++... +......... ...-.-|.-+.++..||-
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 3334445566777888999997654333 68899988655432 1111111100 011123455677788887
Q ss_pred EEEE-eCCCCCCCCCeeEEe-cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 181 IKLF-DSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 181 i~i~-d~~~~~~~~~~~~~~-~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
+.-| |.|......+..... .-...++..+.-....+-+++-...|+...+.....+... .+.-......+++||+
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL---~~~~~~~~~~~~~Sp~ 368 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL---FERAYQAPQLVAMSPN 368 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee---hhhhhcCcceeeeCcc
Confidence 7654 666543322211110 0011122222222223334444455555555433222111 1111123456899999
Q ss_pred CCEEEEEcCCCcEEEEECCCCCeEeEee
Q 019603 259 GQYVVSGSGDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 259 ~~~l~sgs~Dg~i~vWd~~~~~~~~~~~ 286 (338)
+.+|++-. .|.|+++.++++.+...+.
T Consensus 369 ~~~Ll~e~-~gki~~~~l~Nr~Peisws 395 (733)
T COG4590 369 QAYLLSED-QGKIRLAQLENRNPEISWS 395 (733)
T ss_pred cchheeec-CCceEEEEecCCCCCccHH
Confidence 99998753 4679999999877766554
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.78 E-value=12 Score=37.32 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=50.8
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEEcc----------CCee--EEE-eee------CCCCCCCeeEEECCC---CC
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY----------GGEK--RCG-FSL------EPSPNTNTEATFTPD---GQ 260 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~----------~~~~--~~~-~~~------~~~~~~~~~~~fs~~---~~ 260 (338)
...|..+.++|+|++++..|..+-+.+ .+- .|.. .+. +.. ......+..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 456889999999999998887554433 221 1111 111 111 122246678999987 47
Q ss_pred EEEEEcCCCcEEEEECCCC
Q 019603 261 YVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~~~ 279 (338)
.|+.-.+|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888889999999999754
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=89.38 E-value=20 Score=34.01 Aligned_cols=142 Identities=8% Similarity=-0.057 Sum_probs=62.5
Q ss_pred CCCEEEEeeCCC-----cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEE--
Q 019603 38 KDDLLVTASDDD-----SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL-- 110 (338)
Q Consensus 38 ~~~~l~s~s~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 110 (338)
++.+++.||.++ ++..||..+.+.................. .+..++...+.. ...++..|+..+++..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~---~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLP---NPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcC---CCCceEEEECCCCeEEEC
Confidence 455667777653 56778887766433211111001111111 233444333211 1245677776554332
Q ss_pred EeecCCccceEEEEEcCCCCEEEEEECCC---eEEEEECCCcceeeeeeec-Cc-cEEEEcCCCCEEEEEEcCCeEEEEe
Q 019603 111 RYFKGHKERVISLCMSPVNDSFMSGSLDH---SVRIWDLRVNACQGILRLR-GR-PTVAFDQQGLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~---~I~iWd~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~dg~i~i~d 185 (338)
..+........ ...-+++..+.||.++ ++..||.++++=...-.+. .. ......-++.+++.| |....||
T Consensus 347 ~~l~~~r~~~~--~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 347 PSLLKPRCNPA--VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCCCcccE--EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEec
Confidence 22221111111 1223567778888654 4678888765321110110 00 011223345566665 3456777
Q ss_pred CCC
Q 019603 186 SRS 188 (338)
Q Consensus 186 ~~~ 188 (338)
.++
T Consensus 422 p~~ 424 (480)
T PHA02790 422 ESS 424 (480)
T ss_pred CCC
Confidence 654
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.24 E-value=18 Score=33.43 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=78.1
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC----CCCEEEEEecCCcEEEEEcc--CCe-----e
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN----DGKSMLLTTTNNNIYVLDAY--GGE-----K 237 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp----~~~~i~~~~~d~~i~i~~~~--~~~-----~ 237 (338)
...+++|+..|.++||+.......+.+..+-..-..+|..+..-+ .....++.-.-+.+.+|.+. .|. .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 358899999999999987543322222333223345676665432 23334444556677777652 111 1
Q ss_pred E-----EEeeeCCCCCCCeeEEECC-CC-CEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc-
Q 019603 238 R-----CGFSLEPSPNTNTEATFTP-DG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS- 309 (338)
Q Consensus 238 ~-----~~~~~~~~~~~~~~~~fs~-~~-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~- 309 (338)
. ....+....-....-.|.. .| .++..=|-||.+.+++-+.---.+.+.. .----.|.|.|....|+++++
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence 1 1111111111111112221 22 4555669999999999886433333332 111123788888887887764
Q ss_pred -eEEEeeeC
Q 019603 310 -VLSFWIPN 317 (338)
Q Consensus 310 -~~~iw~~~ 317 (338)
.+....+.
T Consensus 196 ~~l~~Yky~ 204 (418)
T PF14727_consen 196 WTLECYKYQ 204 (418)
T ss_pred eeEEEecHH
Confidence 45555543
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.66 E-value=8.4 Score=35.53 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=36.8
Q ss_pred eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee
Q 019603 112 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL 157 (338)
Q Consensus 112 ~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~ 157 (338)
.+......+.++..+|++++.+....=|.|.++|+.++..+.+++.
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 3455667799999999998888877779999999988776666553
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.45 E-value=2.7 Score=24.90 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=25.2
Q ss_pred cceeEEEeecCC---CEEEEeeCCCcEEEEEcCC
Q 019603 28 GKINSLDFHRKD---DLLVTASDDDSVRLYDIVS 58 (338)
Q Consensus 28 ~~V~~l~~s~~~---~~l~s~s~D~~i~iWd~~~ 58 (338)
|.|.++.|+|+. ++|+-+-.-+.+-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 4777777778899999975
No 420
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.27 E-value=3.3 Score=23.82 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCCCEEEEE-cCCCcEEEEECCCCCeEeEeeC
Q 019603 257 PDGQYVVSG-SGDGTLHAWNINTRNEVACWNG 287 (338)
Q Consensus 257 ~~~~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~ 287 (338)
|++++|+.+ -.+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 567766554 4688999999998888777764
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.18 E-value=27 Score=34.10 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=62.7
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec-CccE----EEEcCCCCEEEEEEcCCeEEEEeCCCCC-------C
Q 019603 124 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPT----VAFDQQGLVFAVAMEAGAIKLFDSRSYD-------K 191 (338)
Q Consensus 124 ~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~dg~i~i~d~~~~~-------~ 191 (338)
.-+..++.-+.-+...++.|||.+.+.......+. ...+ ....|+|..+++.+-.+.|.++-...+. .
T Consensus 36 ~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 36 SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 33334444444455678999999887654332221 1122 3446888877777777888888532111 1
Q ss_pred CCCeeEEecCCC-CceEEEEEcCCCCEEEEEecCCcEEEEEc
Q 019603 192 GPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 192 ~~~~~~~~~~~~-~~i~~v~~sp~~~~i~~~~~d~~i~i~~~ 232 (338)
.++..+.+..++ .+|.+..|-++|..++. .++.+.|++.
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~--sGNqlfv~dk 155 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLKDGTLVVG--SGNQLFVFDK 155 (631)
T ss_pred ceeEEEEeecCCCCCccceeEecCCeEEEE--eCCEEEEECC
Confidence 223333333333 57888999998865443 3567888764
No 422
>PRK10115 protease 2; Provisional
Probab=87.78 E-value=31 Score=34.36 Aligned_cols=117 Identities=7% Similarity=0.073 Sum_probs=64.9
Q ss_pred cceeEEEeecCCCEEEEeeC-C----CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 28 GKINSLDFHRKDDLLVTASD-D----DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~-D----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
-.+..+.|+|||++|+-+.+ + ..|++-|+.+|+.+....... ...++|..++..++......-..-...+..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677899999997665433 2 348888998886332211111 1346777777766654431100112567888
Q ss_pred EccCC--eEEEeecCCccceE-EEEEcCCCCEEE---EEECCCeEEEEEC
Q 019603 103 SMYDN--RILRYFKGHKERVI-SLCMSPVNDSFM---SGSLDHSVRIWDL 146 (338)
Q Consensus 103 ~~~~~--~~~~~~~~H~~~V~-~l~~~~~~~~l~---Sgs~D~~I~iWd~ 146 (338)
++.++ +....+.+...... .+..+.++++++ +...++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877 33334443222222 334444777654 2234467888885
No 423
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.04 E-value=16 Score=30.16 Aligned_cols=167 Identities=11% Similarity=0.143 Sum_probs=84.7
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEE-EEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVA 175 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~-Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
..|+.|++.+++.+..-+--...+..=....-+..+. -.=.||.-..+|.++-++...+...+ .-..+..++..+..+
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G-eGWgLt~d~~~Lims 146 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG-EGWGLTSDDKNLIMS 146 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC-cceeeecCCcceEee
Confidence 4699999998876543221112222111111122222 22346777778887777666555433 224455566555555
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEEecCC-CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC---------
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--------- 245 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~--------- 245 (338)
.....++.-|.+++...........+. -..++.+.|- +|..++=.=....|...+..+|+....+...+
T Consensus 147 dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~ 225 (262)
T COG3823 147 DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDK 225 (262)
T ss_pred CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccc
Confidence 544555555554433211111111111 1123333333 45555545556677777777777665444321
Q ss_pred -CCCCCeeEEECCCC-CEEEEE
Q 019603 246 -SPNTNTEATFTPDG-QYVVSG 265 (338)
Q Consensus 246 -~~~~~~~~~fs~~~-~~l~sg 265 (338)
+.+..+.+++.|++ ++++||
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccceeecCcCCeEEEec
Confidence 22345678888887 566665
No 424
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.79 E-value=1.5 Score=42.16 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=29.2
Q ss_pred cceeEEEeec----CCCEEEEeeCCCcEEEEEcCCCeeEeEE
Q 019603 28 GKINSLDFHR----KDDLLVTASDDDSVRLYDIVSAKLIKTT 65 (338)
Q Consensus 28 ~~V~~l~~s~----~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 65 (338)
+.+..+.+++ +..+|++.+.|+++|+||+.+++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4456667766 7789999999999999999999987654
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.63 E-value=13 Score=33.25 Aligned_cols=101 Identities=16% Similarity=0.279 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe-ee----CCCCCCCeeEEECCC---CCEEEE-EcCC--------
Q 019603 206 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SL----EPSPNTNTEATFTPD---GQYVVS-GSGD-------- 268 (338)
Q Consensus 206 i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~-~~----~~~~~~~~~~~fs~~---~~~l~s-gs~D-------- 268 (338)
-+.|.|.|+|+.+ ++...+.|++++ ..+.....+ .. .........++|+|+ +.+|+. .+..
T Consensus 4 P~~~a~~pdG~l~-v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLL-VAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEE-EEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEE-EEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 4678999998754 456699999998 444431211 11 122235678899994 334333 3321
Q ss_pred CcEEEEECCCC-------C-eEeEeeC---CCCceEEEEEcCCCceEEeec
Q 019603 269 GTLHAWNINTR-------N-EVACWNG---NIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 269 g~i~vWd~~~~-------~-~~~~~~~---h~~~v~~l~~~p~~~~l~s~s 308 (338)
..|.-|.+... + .+..+.. ....-..|+|.||+.+.++.+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 24555555433 1 1112222 223446699999998777754
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.59 E-value=23 Score=31.64 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeEe---E-eeCCCCceEEEEEcCCCceEEeecceEEEe
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEVA---C-WNGNIGVVACLKWAPRRAMFVAASSVLSFW 314 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~~---~-~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw 314 (338)
.|.+|++.-..+.|....+++...+. . +......+..|++.|||.++++.+...+||
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 46677777777788888876443222 2 234445899999999999999887655555
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.95 E-value=0.54 Score=46.40 Aligned_cols=102 Identities=15% Similarity=0.252 Sum_probs=61.0
Q ss_pred EcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeE-----------EECCCCCEEEEEcCCCcEEEEECC-C
Q 019603 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA-----------TFTPDGQYVVSGSGDGTLHAWNIN-T 278 (338)
Q Consensus 211 ~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~fs~~~~~l~sgs~Dg~i~vWd~~-~ 278 (338)
|-++..++..+-.++++++.+..+... ..++. |..+++++ .+||||..|+.+..||.++.|.+- +
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH-HHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 334444555555677777766543322 22232 33333332 479999999999999999999863 3
Q ss_pred C----CeEeEeeCCC-CceEEEEEcCCCc---------eEEeec---ceEEEee
Q 019603 279 R----NEVACWNGNI-GVVACLKWAPRRA---------MFVAAS---SVLSFWI 315 (338)
Q Consensus 279 ~----~~~~~~~~h~-~~v~~l~~~p~~~---------~l~s~s---~~~~iw~ 315 (338)
+ .++..++.|. +.-.|..|+.+.. ++++++ ..+++|.
T Consensus 268 g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 3 4566677787 4445555665432 344443 2477774
No 428
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.48 E-value=26 Score=31.22 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=65.2
Q ss_pred EEEEcCCCCEEEEEecC------CcEEEEEccCCeeEEEeee-------------CCCCCCCeeEEECCCCCEEEEEcC-
Q 019603 208 DIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSL-------------EPSPNTNTEATFTPDGQYVVSGSG- 267 (338)
Q Consensus 208 ~v~~sp~~~~i~~~~~d------~~i~i~~~~~~~~~~~~~~-------------~~~~~~~~~~~fs~~~~~l~sgs~- 267 (338)
.+.+.+++.++++.-.+ ..|+.++.. |.....+.. ...+.....++++|+|+.|+++-+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 34566677666655555 567777755 544333311 223346778999999996665433
Q ss_pred ----CC--c-------EEEEECC--C-CCe----EeEeeC-----CCCceEEEEEcCCCceEEee-------cceEEEee
Q 019603 268 ----DG--T-------LHAWNIN--T-RNE----VACWNG-----NIGVVACLKWAPRRAMFVAA-------SSVLSFWI 315 (338)
Q Consensus 268 ----Dg--~-------i~vWd~~--~-~~~----~~~~~~-----h~~~v~~l~~~p~~~~l~s~-------s~~~~iw~ 315 (338)
|+ . +|++.+. + ++. .+.+.. ....|..+.+-|++++++-- ...++|..
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 5666654 3 212 222222 35778899999999988764 12466766
Q ss_pred eCC
Q 019603 316 PNP 318 (338)
Q Consensus 316 ~~~ 318 (338)
++.
T Consensus 248 v~l 250 (326)
T PF13449_consen 248 VDL 250 (326)
T ss_pred EEc
Confidence 553
No 429
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.20 E-value=32 Score=31.89 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=34.7
Q ss_pred CCCeeEEECCCCCEEEEEc-CCCcEEEEECCCCC---eEeEee-C---------------CCCceEEEEEcCCCceEEee
Q 019603 248 NTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRN---EVACWN-G---------------NIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~~~~---~~~~~~-~---------------h~~~v~~l~~~p~~~~l~s~ 307 (338)
.-++.+..|.|+++|.... .+|.||-||+.... ++.... + -.+..+-|..|.||+.|...
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4578999999999988765 68999999998643 333321 1 11344789999999877776
Q ss_pred cceEEEe
Q 019603 308 SSVLSFW 314 (338)
Q Consensus 308 s~~~~iw 314 (338)
.+...-|
T Consensus 392 nSLys~W 398 (461)
T PF05694_consen 392 NSLYSAW 398 (461)
T ss_dssp ----HHH
T ss_pred eeccccc
Confidence 5443334
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=84.86 E-value=36 Score=32.26 Aligned_cols=160 Identities=9% Similarity=0.013 Sum_probs=69.4
Q ss_pred eeEEEEccCCeEEE--eecCCccceEEEEEcCCCCEEEEEECC--CeEEEEECCCcceeeeeeecCc--cEEEEcCCCCE
Q 019603 98 SLRYLSMYDNRILR--YFKGHKERVISLCMSPVNDSFMSGSLD--HSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLV 171 (338)
Q Consensus 98 ~i~~~~~~~~~~~~--~~~~H~~~V~~l~~~~~~~~l~Sgs~D--~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~ 171 (338)
.+..||..+++... .+......... ...+++..+.||.+ .++..||..+++=...-.+... ......-+|.+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~--v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~I 365 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASG--VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVI 365 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceE--EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEE
Confidence 45667766654322 22211111111 22356777788864 4578888765432111111111 11222335667
Q ss_pred EEEEEcCC---eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC
Q 019603 172 FAVAMEAG---AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 172 ~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
.++|+.++ .+..||.++........... . ......+. -+++.++.|+ .+.++|..+++....-.+.....
T Consensus 366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~-r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~ 438 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-P-HYKSCALV--FGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD 438 (480)
T ss_pred EEecCcCCCCccEEEEeCCCCEEEeCCCCCC-c-cccceEEE--ECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc
Confidence 77766543 35567765422110000000 0 00111112 2455455543 46677777665543222211111
Q ss_pred CCeeEEECCCCCEEEEEcCC
Q 019603 249 TNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~D 268 (338)
.. .++ --+|+..+.||.+
T Consensus 439 ~~-~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 439 NP-ELI-IVDNKLLLIGGFY 456 (480)
T ss_pred cc-EEE-EECCEEEEECCcC
Confidence 11 122 2367777777754
No 431
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.84 E-value=16 Score=34.90 Aligned_cols=115 Identities=14% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCccceEEEEEcCCC----CEEEEEECCCeEEEEECCC-----cceeeee--eecC-c----cEEEEcCCCCEEEEEEcC
Q 019603 115 GHKERVISLCMSPVN----DSFMSGSLDHSVRIWDLRV-----NACQGIL--RLRG-R----PTVAFDQQGLVFAVAMEA 178 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~----~~l~Sgs~D~~I~iWd~~~-----~~~~~~~--~~~~-~----~~~~~~~~~~~~~~~~~d 178 (338)
|+-.-|.++.|.|-+ ..+...-.-+.|.+|.+.- ++..... +... - .-..|+|...++++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 344678999999863 3577778889999999752 1211111 1111 1 125689988888777666
Q ss_pred CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEc
Q 019603 179 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDA 232 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~ 232 (338)
..--+++.+.... ... .-+ ...+.|.|.+|.+||+.++++ +..=.-++||.
T Consensus 134 dvSV~~sV~~d~s-rVk-aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDSS-RVK-ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCCc-eEE-Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 5555566553221 111 111 235669999999999876654 44445678874
No 432
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.84 E-value=25 Score=30.49 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=78.5
Q ss_pred EEcCCCCEEEEEECC-----CeEEEEECCCc-ceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEE-e-------CC
Q 019603 124 CMSPVNDSFMSGSLD-----HSVRIWDLRVN-ACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLF-D-------SR 187 (338)
Q Consensus 124 ~~~~~~~~l~Sgs~D-----~~I~iWd~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~-d-------~~ 187 (338)
.|+|+|++|+..=.| |.|-|||.+.+ +.+..+..++. -.+.+.+||..++++. |-|+.= | +.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 589999988755333 88999998743 22333333332 2477888998877654 223221 1 11
Q ss_pred CCCCCCCeeEE-------ec-------CCCCceEEEEEcCCCCEEEEEecCCc-----EEEEEccCCeeEEEeeeCC---
Q 019603 188 SYDKGPFDTFL-------VG-------GDTAEVCDIKFSNDGKSMLLTTTNNN-----IYVLDAYGGEKRCGFSLEP--- 245 (338)
Q Consensus 188 ~~~~~~~~~~~-------~~-------~~~~~i~~v~~sp~~~~i~~~~~d~~-----i~i~~~~~~~~~~~~~~~~--- 245 (338)
+++ |...++ ++ .+.-.+..+...+||..++.+-..|. -.+=....++....+....
T Consensus 198 sMe--PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 198 SME--PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hcC--ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 111 110110 11 12234666777777664444433221 0000111222221111111
Q ss_pred --CCCCCeeEEECCCCCEEEEEc-CCCcEEEEECCCCCeEeE
Q 019603 246 --SPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVAC 284 (338)
Q Consensus 246 --~~~~~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~~~~~~~~ 284 (338)
..+.+-+++.+-+..+++..| ..+..-+||..++..+..
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 112344566766666655555 455678999999977653
No 433
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.72 E-value=33 Score=31.64 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=69.2
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCc--ceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCC---CCeeE
Q 019603 123 LCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG---PFDTF 197 (338)
Q Consensus 123 l~~~~~~~~l~Sgs~D~~I~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~---~~~~~ 197 (338)
+...+++.+++.|..-.-.+-||-... +....-.......+.+.+++.+++++ ..|.+..-+- ....- .+...
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d-~G~~~~~~~f~~~ 321 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKG-TGLTEEDFDFEEA 321 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecC-CCCcccccceeec
Confidence 345566666555544444444553211 11100001112235667777766554 5555543211 11000 11111
Q ss_pred EecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEee-eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEE
Q 019603 198 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 274 (338)
Q Consensus 198 ~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vW 274 (338)
........+..+.|.+++. +++++..|.+..-. ..|+.-...+ ...-+.....+.|.++++.+++| .+|.|.-|
T Consensus 322 ~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 322 DIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 1111223478888887766 45556667666654 3333211111 12223456788888877777665 57776544
No 434
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=83.93 E-value=63 Score=34.29 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCCCceEEEEEcCCCceEEeecceEEEeeeC-----CCCCCCCCCCCCccccc
Q 019603 287 GNIGVVACLKWAPRRAMFVAASSVLSFWIPN-----PSSNSTDESTDPQATVK 334 (338)
Q Consensus 287 ~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~-----~~~~~~~~~~~~~~~~~ 334 (338)
+|-....+|+.+|||...++-+++.+|-.+. ...--.++.++|--|++
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~ 711 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEK 711 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhhhhhhhcccccCCCceeeccCccccee
Confidence 5567889999999999888877776665432 11233455566655554
No 435
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.92 E-value=29 Score=30.45 Aligned_cols=167 Identities=17% Similarity=0.236 Sum_probs=91.1
Q ss_pred EEEEEECCCeEEEEECCCcce---eeeeeec-Cc-----cEEEEcC--CCC-EEEEEEcCCeEEEEeCCCCCC-------
Q 019603 131 SFMSGSLDHSVRIWDLRVNAC---QGILRLR-GR-----PTVAFDQ--QGL-VFAVAMEAGAIKLFDSRSYDK------- 191 (338)
Q Consensus 131 ~l~Sgs~D~~I~iWd~~~~~~---~~~~~~~-~~-----~~~~~~~--~~~-~~~~~~~dg~i~i~d~~~~~~------- 191 (338)
.++-+++||+|.-|....+.. ...+... +. .-+++.. .+. +.++--..++|.+||..-...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 467889999999998543322 1112111 11 1133332 233 445555778999998432110
Q ss_pred --------CCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC------
Q 019603 192 --------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP------ 257 (338)
Q Consensus 192 --------~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~------ 257 (338)
.|+....+.+ .-.|+-..-.++.+.=+.+...+.|-+||.. |+.+..+.-.+.-+....++.-|
T Consensus 182 DP~iPagyAPFnIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0111111111 1112222223333333334445678888864 55555444333334444555433
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCC------CceEEEEEcC
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNI------GVVACLKWAP 299 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~------~~v~~l~~~p 299 (338)
.|.+|+--=.||+|.++|..+++-+..+.... ..+|.|+|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 46777776779999999999988877776433 4679999986
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.67 E-value=51 Score=33.02 Aligned_cols=103 Identities=11% Similarity=0.127 Sum_probs=59.3
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC--CeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS--AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
|.....-..-.-+|..|.+||+|++|+-.|..+-+.+ .+.. |+. ..+......+.|-++
T Consensus 74 ~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~-~~~~~g~~~i~Crt~----------------- 134 (717)
T PF10168_consen 74 YQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKN-GEFEDGKKEINCRTV----------------- 134 (717)
T ss_pred cceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCcc-ccccCCCcceeEEEE-----------------
Confidence 3333333344678999999999999999888665444 4421 100 000000111111111
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCC---CEEEEEECCCeEEEEECCCc
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN---DSFMSGSLDHSVRIWDLRVN 149 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~---~~l~Sgs~D~~I~iWd~~~~ 149 (338)
.+... .....+...|..+.|+|.+ ..|+.=..|+++|+||+...
T Consensus 135 --------~v~~~---~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 135 --------PVDER---FFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --------Eechh---hccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11100 0012356688899999974 67888889999999999643
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.27 E-value=30 Score=32.10 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe--eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC-
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF--SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR- 279 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~- 279 (338)
.++|.++.||||.+.+++--.++.|.+++....+....+ +.......+....|+.+ .-+|--+ |.-+.+|.+...
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEchhh
Confidence 457999999999999999999999999986443332221 22222334666777765 3444333 334777777643
Q ss_pred CeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 280 NEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 280 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
+.++..+.|.-.|+--.|.|+.+.+.-++
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeec
Confidence 34556677888899999999988655554
No 438
>PRK10115 protease 2; Provisional
Probab=83.11 E-value=53 Score=32.80 Aligned_cols=194 Identities=9% Similarity=0.051 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCCEEEE-----EECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcC------CeEEEEeCC
Q 019603 119 RVISLCMSPVNDSFMS-----GSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDSR 187 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~S-----gs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------g~i~i~d~~ 187 (338)
.+..+.++|++++|+- |+...+|++-|+.+++.+..........+.|.+++..++....+ ..+..+++.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 4556789999998763 34445678888887753211111112347888888755544332 244445555
Q ss_pred CCCCCCCeeEEecCCCCceE-EEEEcCCCCEEEEEecC---CcEEEEEcc--CCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 188 SYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTTN---NNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~-~v~~sp~~~~i~~~~~d---~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
+.... +..+......... ....+.++++++..+.. +.+.+++.. .+....... .. ......+. +..+.+
T Consensus 208 t~~~~--d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~l 282 (686)
T PRK10115 208 TPASQ--DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RR-KDHEYSLD-HYQHRF 282 (686)
T ss_pred CChhH--CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CC-CCCEEEEE-eCCCEE
Confidence 43111 1122221111122 33345578876655443 468888742 333222111 11 11112222 222333
Q ss_pred EE-EE--cCCCcEEEEECCCCCeEeEeeCC-C-CceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 262 VV-SG--SGDGTLHAWNINTRNEVACWNGN-I-GVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 262 l~-sg--s~Dg~i~vWd~~~~~~~~~~~~h-~-~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
++ |- +....|...++.....-..+-.+ . ..|..+.+..+ .++++.. +.-+++..+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcC
Confidence 33 32 22334444455422222333344 3 36888888733 4444433 3445555553
No 439
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.90 E-value=43 Score=31.62 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc-eEEEe
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS-VLSFW 314 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-~~~iw 314 (338)
...|+|.+|..|-||+||.-.-..-..+.+-...|..|..+.+|.++.+.+. .+.+-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~ 629 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLT 629 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEE
Confidence 3569999999999999997544444456677788999999999998777764 34433
No 440
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.81 E-value=26 Score=29.03 Aligned_cols=98 Identities=17% Similarity=0.313 Sum_probs=58.9
Q ss_pred CEEEEEecCCcEEEEEccCCe--eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC------CcEEEE-ECCC----CCeE
Q 019603 216 KSMLLTTTNNNIYVLDAYGGE--KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD------GTLHAW-NINT----RNEV 282 (338)
Q Consensus 216 ~~i~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D------g~i~vW-d~~~----~~~~ 282 (338)
..++.+.....|.+|++...+ ....|... +.+..+.++..|+||+|-=++ ..+|+| |++. ..++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 445555667889999987333 33333322 468899999999999984222 156665 2321 1222
Q ss_pred e-EeeCC---------------------CCceEEEEEcCC-CceEEeecceEEEeee
Q 019603 283 A-CWNGN---------------------IGVVACLKWAPR-RAMFVAASSVLSFWIP 316 (338)
Q Consensus 283 ~-~~~~h---------------------~~~v~~l~~~p~-~~~l~s~s~~~~iw~~ 316 (338)
. .+-|| ...+.|++-.|- |+++++....+.||..
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l 162 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTL 162 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEE
Confidence 2 12121 346678888885 5566665677888853
No 441
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=81.96 E-value=36 Score=30.10 Aligned_cols=219 Identities=14% Similarity=0.090 Sum_probs=106.3
Q ss_pred EEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEE
Q 019603 32 SLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110 (338)
Q Consensus 32 ~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (338)
+-.|.++.. ++.+--..+.|.-|+..+++.... .....+........+..++ +. ...+.+++..++..+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~--~~p~~~~~~~~~d~~g~Lv-~~-------~~g~~~~~~~~~~~~ 98 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVF--PSPGGFSSGALIDAGGRLI-AC-------EHGVRLLDPDTGGKI 98 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE--ECCCCcccceeecCCCeEE-EE-------ccccEEEeccCCcee
Confidence 335677666 455555677788888876653221 1112222222222222222 21 134555555444332
Q ss_pred Eee----cCCc-cceEEEEEcCCCCEEEEEEC------C-----CeEEEEECCCcceeeeeee--cCccEEEEcCCCCEE
Q 019603 111 RYF----KGHK-ERVISLCMSPVNDSFMSGSL------D-----HSVRIWDLRVNACQGILRL--RGRPTVAFDQQGLVF 172 (338)
Q Consensus 111 ~~~----~~H~-~~V~~l~~~~~~~~l~Sgs~------D-----~~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 172 (338)
..+ .+.. .+-+.+.+.|+|.+.++-.. + |.|...|. .+...+.+.. ...+-++|+|++..+
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred EEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEE
Confidence 221 2222 45567788888876553322 1 33444443 2332222221 122458999999755
Q ss_pred EEE-EcCCeEEEEeCCC--CCCCCCeeEE-ecCCCCceEEEEEcCCCCEEEEEecC-CcEEEEEccCCeeEEEeeeCCCC
Q 019603 173 AVA-MEAGAIKLFDSRS--YDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTN-NNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 173 ~~~-~~dg~i~i~d~~~--~~~~~~~~~~-~~~~~~~i~~v~~sp~~~~i~~~~~d-~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
..+ +..+.|.-|++.. ........+. .....+.-=.++...+|.+.+.+..+ +.|.+|+.. |+....+.+..
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-- 254 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-- 254 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--
Confidence 544 4457777776542 1111101111 11112222234556667765433333 389999876 77776666553
Q ss_pred CCCeeEEECC-CCCEEEE
Q 019603 248 NTNTEATFTP-DGQYVVS 264 (338)
Q Consensus 248 ~~~~~~~fs~-~~~~l~s 264 (338)
..+++++|-- +.+.|+.
T Consensus 255 ~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred CCCccceEeCCCcCEEEE
Confidence 4567777753 3444443
No 442
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.82 E-value=30 Score=29.14 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=35.9
Q ss_pred EcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 211 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 211 ~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
...+|.+.+++-..++|..+|..+|+....+.+. ...+++++|...
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk 264 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK 264 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence 3557888888888899999999999887766655 456899999644
No 443
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.20 E-value=48 Score=31.08 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=24.8
Q ss_pred CccceEEEEEcCCCCEEEEEECCCeEEEEECCCc
Q 019603 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~ 149 (338)
.-..-+.++|.|++++|++--..|.|++++...+
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 3455688999999887777555788888875443
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.53 E-value=8.5 Score=21.98 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=22.4
Q ss_pred cCCCEEEEe-eCCCcEEEEEcCCCeeEeEEee
Q 019603 37 RKDDLLVTA-SDDDSVRLYDIVSAKLIKTTYH 67 (338)
Q Consensus 37 ~~~~~l~s~-s~D~~i~iWd~~~~~~~~~~~~ 67 (338)
|+++.|+.+ ..+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 567755554 4689999999988877765543
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.35 E-value=21 Score=33.04 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCC--C--eEeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeCCCCCC
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--N--EVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNS 322 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~--~--~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~~~~~~ 322 (338)
+.+.++.||+|.+.||.--.|++|.+.+..-. + .....+.-...|.+..|+.....-+.....+.++...|...+
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrs 145 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRS 145 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhh
Confidence 46889999999999999999999999998321 1 122334445568888887764433333344666665555443
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.30 E-value=41 Score=31.83 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=15.2
Q ss_pred EEEcCCCCEEEEEEcCCeEEEE
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~ 184 (338)
+..++.|..++.++.+|.+-++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEecCCCceEEEecCCeeEEEE
Confidence 4556778877777777766554
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.05 E-value=66 Score=31.89 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=45.6
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee--CCCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
..+..++.||+.++|+--..+|.|.+-..+-.++...+. .|.-+ ..++|.-+...+.+--..+++-.++
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~WcgndaVvl~~e~~l~lvgp~ 287 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGNDAVVLSWEVNLMLVGPP 287 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCCceEEEEeeeEEEEcCC
Confidence 456778999999999999999999998887666655554 33222 2566666654444433444444444
No 448
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.33 E-value=41 Score=29.12 Aligned_cols=229 Identities=13% Similarity=0.141 Sum_probs=126.8
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEE
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (338)
..|+-.|||..-+++..-+.|-=-|..+|+......+....-..+..-+++...++-+ +..|.-++-.+.+..
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~-------~~aI~R~dpkt~evt 137 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT-------GLAIGRLDPKTLEVT 137 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC-------cceeEEecCcccceE
Confidence 4566677888778887777777778888876544444433334444555555544322 234555555444432
Q ss_pred Ee-e-cCC-ccceEEEEEcCCCCEEEEEECC---------CeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcC
Q 019603 111 RY-F-KGH-KERVISLCMSPVNDSFMSGSLD---------HSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA 178 (338)
Q Consensus 111 ~~-~-~~H-~~~V~~l~~~~~~~~l~Sgs~D---------~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 178 (338)
+. + ..| .+......|.+.|+.-.++... +.|++|+.-.+ .+..-++..|+|.+..+...+
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG--------~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG--------GGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC--------CCCcceEECCCCcEEEEeccc
Confidence 21 1 223 3456677888888876665421 33444443221 112347889999988888888
Q ss_pred CeEEEEeCCCCCCCCCeeEEe-cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC
Q 019603 179 GAIKLFDSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 257 (338)
+.|-..|...+... .+.. .........+--+|.++.-++....+.++.+|-..-. -..+.+.+....-.++...-
T Consensus 210 naiaridp~~~~ae---v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~ 285 (353)
T COG4257 210 NAIARIDPFAGHAE---VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDR 285 (353)
T ss_pred cceEEcccccCCcc---eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeecc
Confidence 88888776544211 1110 1111222334456677766666666777777754333 34566655444445555555
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 019603 258 DGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.++.-++--.-|.|.-+|-.+
T Consensus 286 ~grVW~sea~agai~rfdpet 306 (353)
T COG4257 286 HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCcEEeeccccCceeecCccc
Confidence 555544444445555555544
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.26 E-value=36 Score=32.11 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=79.9
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-------EEEEEECCCeEEEEECCCcc-eeeeeeecCc-----cEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-------SFMSGSLDHSVRIWDLRVNA-CQGILRLRGR-----PTV 163 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-------~l~Sgs~D~~I~iWd~~~~~-~~~~~~~~~~-----~~~ 163 (338)
..+.-.|+..|+.+..+.-|.+.| +.|.|..+ .-+.|=.|..|.--|.|.+. .+.+.+.... ...
T Consensus 490 ~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss 567 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSS 567 (776)
T ss_pred ccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccc
Confidence 567778888999999998888774 57777542 23456667777777877543 2222222111 112
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEc
Q 019603 164 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 164 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~ 232 (338)
......-++++|+..|-||+||--. ... ...+.+-...|-.+..+.+|+++++.+ ...+.+.|+
T Consensus 568 ~~tTesGyIa~as~kGDirLyDRig-~rA---KtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 568 GMTTESGYIAAASRKGDIRLYDRIG-KRA---KTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred cccccCceEEEecCCCceeeehhhc-chh---hhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence 2223345788999999999998311 111 111223445688888899999877665 356666664
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.13 E-value=9.3 Score=21.60 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=20.3
Q ss_pred eccCCcceeEEEeecCCCEEEEee-CC--CcEEEE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTAS-DD--DSVRLY 54 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s-~D--~~i~iW 54 (338)
+....+.-....|+|||+.|+=++ .+ +.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345566778899999998655544 45 566665
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.66 E-value=0.37 Score=44.27 Aligned_cols=135 Identities=13% Similarity=0.214 Sum_probs=85.5
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEE-EEEecCCcEEEEEccCCeeEEEe
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i-~~~~~d~~i~i~~~~~~~~~~~~ 241 (338)
..+.+.+.-++.++.+-.+..||-... ..+-...++....++|.-++..+ +.+-..+.+++|+..+.... .+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq------~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL 112 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQ------VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL 112 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcc------eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH
Confidence 345555555666666666666663210 11111223445566777666544 45556789999998654321 11
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEE
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 305 (338)
+.-+. ..-.-+.|++.++.++-|--.|.+.|++..+.+.+..+-.|...+.+++|.+.++.+.
T Consensus 113 E~gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 113 ESGGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred hccCc-chHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 11111 1112267888889999998899999999998777766666999999999999876544
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=77.53 E-value=32 Score=34.08 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=47.5
Q ss_pred CceEEEEEc--CCCCEEEEEecCCcEEEEEccCC-eeEEEeeeCCCCCCCeeEEECCCC------CEEEEEcCCCcEEEE
Q 019603 204 AEVCDIKFS--NDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDG------QYVVSGSGDGTLHAW 274 (338)
Q Consensus 204 ~~i~~v~~s--p~~~~i~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~fs~~~------~~l~sgs~Dg~i~vW 274 (338)
.....++++ ...++||+++....|.+|-.... +.........+...|-+++|-++. .+|++++=.|.+-+|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 356777777 77778888888888888754321 111111112234467788886654 278888999999998
Q ss_pred EC
Q 019603 275 NI 276 (338)
Q Consensus 275 d~ 276 (338)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 88
No 453
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.51 E-value=22 Score=24.94 Aligned_cols=52 Identities=17% Similarity=0.458 Sum_probs=33.9
Q ss_pred EEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEee-c---ceEEEeee
Q 019603 264 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA-S---SVLSFWIP 316 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s---~~~~iw~~ 316 (338)
.+..+|.+.-||..+++....+.+ -..-+.|+.+||+.+++.+ + ...+.|.-
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred cCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 456678899999998765444443 3567899999999966665 3 34678853
No 454
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=76.02 E-value=54 Score=28.69 Aligned_cols=190 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred ceEEEEEcCCCCEEE--EEECCC----------eEEEEECCCcceeeeeeecCccE--------EEEcCC------CCEE
Q 019603 119 RVISLCMSPVNDSFM--SGSLDH----------SVRIWDLRVNACQGILRLRGRPT--------VAFDQQ------GLVF 172 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~--Sgs~D~----------~I~iWd~~~~~~~~~~~~~~~~~--------~~~~~~------~~~~ 172 (338)
.|.++...++++.-+ +|..+. +|-+||+++++.++.+.+..... +.++.. +..+
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Q ss_pred EEEEcCCeEEEEeCCC-----------CCCCCCeeEEecCC----CCceEEEEEcC---CCCEEEEEecCCcEEEE----
Q 019603 173 AVAMEAGAIKLFDSRS-----------YDKGPFDTFLVGGD----TAEVCDIKFSN---DGKSMLLTTTNNNIYVL---- 230 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~~~----~~~i~~v~~sp---~~~~i~~~~~d~~i~i~---- 230 (338)
++-...+.+-++|+++ ........+.+.+. ...+..++.+| +++++....-.+.-...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Q ss_pred EccCCeeEEEe------eeCCCCC-CCeeEEECCCCCEEEEEcCCCcEEEEECCC-----CCeEeEeeCC-CCceEEEEE
Q 019603 231 DAYGGEKRCGF------SLEPSPN-TNTEATFTPDGQYVVSGSGDGTLHAWNINT-----RNEVACWNGN-IGVVACLKW 297 (338)
Q Consensus 231 ~~~~~~~~~~~------~~~~~~~-~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~-----~~~~~~~~~h-~~~v~~l~~ 297 (338)
.+......... +..+... .....+++++|..+++--+...|..|+..+ .-.+-..... -.++.++.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Q ss_pred cC--CCceEEeec
Q 019603 298 AP--RRAMFVAAS 308 (338)
Q Consensus 298 ~p--~~~~l~s~s 308 (338)
.+ ++.+.+.+.
T Consensus 242 ~~~~~g~L~v~sn 254 (287)
T PF03022_consen 242 DPEGDGYLWVLSN 254 (287)
T ss_dssp -T--TS-EEEEE-
T ss_pred ccccCceEEEEEC
No 455
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.84 E-value=88 Score=32.74 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=25.0
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcC
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIV 57 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~ 57 (338)
.-..++|+|.-.+++-+...|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 45678999999999999999999999643
No 456
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.14 E-value=22 Score=28.31 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=24.3
Q ss_pred cceEEEEEcCCC------CEEEEEECCCeEEEEECC
Q 019603 118 ERVISLCMSPVN------DSFMSGSLDHSVRIWDLR 147 (338)
Q Consensus 118 ~~V~~l~~~~~~------~~l~Sgs~D~~I~iWd~~ 147 (338)
..|.+++|||-| ..|+.-..++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999954 268888999999999754
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.52 E-value=1e+02 Score=32.66 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=50.1
Q ss_pred EecCCCCceEEEEEcCCCCEEEEEecCCcEEEE--EccCC------eeEE------------EeeeC-CCCCCCeeEEEC
Q 019603 198 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL--DAYGG------EKRC------------GFSLE-PSPNTNTEATFT 256 (338)
Q Consensus 198 ~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~--~~~~~------~~~~------------~~~~~-~~~~~~~~~~fs 256 (338)
.+......|+++....+|+ |+.+|.||.++=+ ....| ++++ .+... .+..++..++..
T Consensus 173 ~i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 3444566788888777776 6666677765432 21111 1111 01111 223467788887
Q ss_pred CCCCEEEEEcCCCcEEEEECCC
Q 019603 257 PDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 257 ~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
..-+.+.+=++.|+|++|++..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 7778899999999999999975
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.52 E-value=13 Score=20.95 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=17.9
Q ss_pred CccceEEEEEcCCCCEEE-EEECC--CeEEEE
Q 019603 116 HKERVISLCMSPVNDSFM-SGSLD--HSVRIW 144 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~-Sgs~D--~~I~iW 144 (338)
....-....|+|||+.|+ ++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778999998776 44444 555555
No 459
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=73.28 E-value=57 Score=27.74 Aligned_cols=141 Identities=14% Similarity=0.113 Sum_probs=72.8
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEEC-C--CeEEEEECCC--cceeee------eeecCccEEEEcC
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSL-D--HSVRIWDLRV--NACQGI------LRLRGRPTVAFDQ 167 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~-D--~~I~iWd~~~--~~~~~~------~~~~~~~~~~~~~ 167 (338)
--+||+.+++....-....-...+-.+-++|+.+.+||. | +.+|+++... +.|... ...+-.++...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 356777766543322222223334467789999998875 2 5588888643 122111 1112234566678
Q ss_pred CCCEEEEEEcCC-eEEEEeCCCCCCCCCee-EEec----CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe
Q 019603 168 QGLVFAVAMEAG-AIKLFDSRSYDKGPFDT-FLVG----GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 168 ~~~~~~~~~~dg-~i~i~d~~~~~~~~~~~-~~~~----~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~ 241 (338)
||.++++|+... ...+|+.+......... ++.. .....--.+-..|+|+.++.+.. .-.|+|..+++.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeCCCCeEEeeC
Confidence 999888887664 33444432211111111 1110 00111123556799998877764 4556676666554433
No 460
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=72.14 E-value=77 Score=28.73 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=34.6
Q ss_pred EcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec----ceEEEeeeC
Q 019603 265 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPN 317 (338)
Q Consensus 265 gs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s----~~~~iw~~~ 317 (338)
+..+|.+.-+|..+. ..+.+..--...+.|+.|||+.+++.+= ...++|...
T Consensus 195 g~~~GRl~~YD~~tK-~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g 250 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTK-VTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKG 250 (376)
T ss_pred CCCccceEEecCccc-chhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecC
Confidence 445677777777653 3344444446678899999999888873 235788644
No 461
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=72.04 E-value=98 Score=29.91 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=66.8
Q ss_pred CceEEEEEcCC----CCEEEEEecCCcEEEEEccC-----CeeEEEeeeC---CCCCCCeeEEECCCCCEEEEEcCCCcE
Q 019603 204 AEVCDIKFSND----GKSMLLTTTNNNIYVLDAYG-----GEKRCGFSLE---PSPNTNTEATFTPDGQYVVSGSGDGTL 271 (338)
Q Consensus 204 ~~i~~v~~sp~----~~~i~~~~~d~~i~i~~~~~-----~~~~~~~~~~---~~~~~~~~~~fs~~~~~l~sgs~Dg~i 271 (338)
..|..+.|.|- -..+++....+.|.+|.+.. ++.......+ ..+.-...+.|+|....|+.-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 34788889885 23577777888999998652 2222111111 111122357799998887764433333
Q ss_pred EEEECC--CCCeEeEeeCCCCceEEEEEcCCCceEEeec-ceE--EEee
Q 019603 272 HAWNIN--TRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVL--SFWI 315 (338)
Q Consensus 272 ~vWd~~--~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~--~iw~ 315 (338)
-+.++. +......+++ .|-|.|-.|.+||+.|+.|- +.+ .+|.
T Consensus 137 V~~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred EeeeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 355554 2333344544 58999999999999777763 333 4674
No 462
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.66 E-value=12 Score=20.10 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=19.5
Q ss_pred CEEEEEcCCCcEEEEECCCCCeEe
Q 019603 260 QYVVSGSGDGTLHAWNINTRNEVA 283 (338)
Q Consensus 260 ~~l~sgs~Dg~i~vWd~~~~~~~~ 283 (338)
..++.++.+|.++..|..+++.+-
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEE
Confidence 367778889999999998887653
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.11 E-value=21 Score=29.52 Aligned_cols=47 Identities=9% Similarity=0.216 Sum_probs=34.4
Q ss_pred CEEEEEcCCCcEEEEECCC--CCeEeEeeCCCCceEEEEEcCCCceEEee
Q 019603 260 QYVVSGSGDGTLHAWNINT--RNEVACWNGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 260 ~~l~sgs~Dg~i~vWd~~~--~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
+.|+.+...+.|.+|++.. .+....|. -.+.|..+.++..|.++++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEE
Confidence 4444445667899999983 23444554 34889999999999999985
No 464
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=69.96 E-value=79 Score=27.97 Aligned_cols=56 Identities=9% Similarity=0.007 Sum_probs=27.9
Q ss_pred CCCEEEEEecCC----cEEEEEccCCeeEEEeeeC--CCCCCC-eeE-EECCCCCEEEEEcCCC
Q 019603 214 DGKSMLLTTTNN----NIYVLDAYGGEKRCGFSLE--PSPNTN-TEA-TFTPDGQYVVSGSGDG 269 (338)
Q Consensus 214 ~~~~i~~~~~d~----~i~i~~~~~~~~~~~~~~~--~~~~~~-~~~-~fs~~~~~l~sgs~Dg 269 (338)
+++.++.++.++ .+..||..+.+....-... ..+... ... ....+++.++.|+.++
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNK 234 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCH
Confidence 566777777653 3567887766543321111 011110 111 1223567788888763
No 465
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=69.78 E-value=82 Score=28.08 Aligned_cols=103 Identities=14% Similarity=0.218 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCEEEEEecCCc------EEEEEccC--C---e--eEEEeeeCCCC--------CCCeeEEECCCCCEE
Q 019603 204 AEVCDIKFSNDGKSMLLTTTNNN------IYVLDAYG--G---E--KRCGFSLEPSP--------NTNTEATFTPDGQYV 262 (338)
Q Consensus 204 ~~i~~v~~sp~~~~i~~~~~d~~------i~i~~~~~--~---~--~~~~~~~~~~~--------~~~~~~~fs~~~~~l 262 (338)
+.++.+.+.|++..+++.+.++. ++.+.+.. + . ......+.... .....+++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 34677888865555666666665 55554332 1 0 00111111111 134467888888888
Q ss_pred EEEcCC------CcEEEEECCCCCeEeEee---------------CCCCceEEEEEcCCCceEEee
Q 019603 263 VSGSGD------GTLHAWNINTRNEVACWN---------------GNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 263 ~sgs~D------g~i~vWd~~~~~~~~~~~---------------~h~~~v~~l~~~p~~~~l~s~ 307 (338)
++.=.+ -.|+.++.. ++....+. ......-+|+++|+++.|.++
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 876555 677777765 54433331 235678999999999955554
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.44 E-value=64 Score=30.65 Aligned_cols=29 Identities=0% Similarity=-0.208 Sum_probs=24.4
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEE
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYD 55 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd 55 (338)
.-+|..+..++.|..++-+|.||-+.++=
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 46788899999999999999999877763
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.69 E-value=1.1e+02 Score=28.91 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC-----CCCCCCeeEEECCCC------CEEEEEc-------
Q 019603 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-----PSPNTNTEATFTPDG------QYVVSGS------- 266 (338)
Q Consensus 205 ~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~-----~~~~~~~~~~fs~~~------~~l~sgs------- 266 (338)
.-..|.|.|+++.+++--..+.|++++..++.......+. ........++|+|+- .+|+..-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 4567889999975554433699999876544322211111 123456789999874 2333321
Q ss_pred ---CCCcEEEEECCCC-----CeEeEee------CCCCceEEEEEcCCCceEEeec
Q 019603 267 ---GDGTLHAWNINTR-----NEVACWN------GNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 267 ---~Dg~i~vWd~~~~-----~~~~~~~------~h~~~v~~l~~~p~~~~l~s~s 308 (338)
....|.-|.+... .....+. .|.+ ..|+|.||+.++++.+
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~G 164 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIG 164 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEEC
Confidence 1234544555321 1112222 2433 4688999999777654
No 468
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=68.61 E-value=32 Score=27.38 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=24.2
Q ss_pred CCeeEEECCCC------CEEEEEcCCCcEEEEECCC
Q 019603 249 TNTEATFTPDG------QYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 249 ~~~~~~fs~~~------~~l~sgs~Dg~i~vWd~~~ 278 (338)
.+..++|||.| .+|+.-..++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 56788999954 4688889999999998653
No 469
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=67.68 E-value=83 Score=27.34 Aligned_cols=189 Identities=14% Similarity=0.150 Sum_probs=105.5
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec------CccEEEEcCCCC
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR------GRPTVAFDQQGL 170 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~------~~~~~~~~~~~~ 170 (338)
+.|.-+|..+++....=.+--..-..+.+.|++..-++=+.- -|.-.|.++.+. ..+.+. ..+...|++.|.
T Consensus 83 gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~lp~~~a~~nlet~vfD~~G~ 160 (353)
T COG4257 83 GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPLPLEHADANLETAVFDPWGN 160 (353)
T ss_pred ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeecccccCCCcccceeeCCCcc
Confidence 566677777777655444444444556778887644432222 566667655443 223321 124578899888
Q ss_pred EEEEEEc---------CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEe
Q 019603 171 VFAVAME---------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 171 ~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~ 241 (338)
+-.++.. .+.+++|+.- ....-..|+..|+|+..++.-.++.|...|...+.... +
T Consensus 161 lWFt~q~G~yGrLdPa~~~i~vfpaP--------------qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev-~ 225 (353)
T COG4257 161 LWFTGQIGAYGRLDPARNVISVFPAP--------------QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEV-V 225 (353)
T ss_pred EEEeeccccceecCcccCceeeeccC--------------CCCCCcceEECCCCcEEEEeccccceEEcccccCCcce-e
Confidence 7777642 2334444322 11223446689999988888888888888877663221 1
Q ss_pred eeC-CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC-CCeEeEeeCCCCceEEEEEcCCCc
Q 019603 242 SLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 242 ~~~-~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
... ........+--+|.|+.-+|-...+.++-+|-.. .-....|.+....-.++.....++
T Consensus 226 p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 226 PQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 111 1112233455678888888888888888888653 223333433333333444444433
No 470
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=67.62 E-value=1.4e+02 Score=29.86 Aligned_cols=102 Identities=10% Similarity=0.073 Sum_probs=60.4
Q ss_pred eEEEEEcC--CCCEEEEEecCCcEEEEEccC-------C----ee-------EEEeeeCCCCCCCeeEEEC--CCCCEEE
Q 019603 206 VCDIKFSN--DGKSMLLTTTNNNIYVLDAYG-------G----EK-------RCGFSLEPSPNTNTEATFT--PDGQYVV 263 (338)
Q Consensus 206 i~~v~~sp--~~~~i~~~~~d~~i~i~~~~~-------~----~~-------~~~~~~~~~~~~~~~~~fs--~~~~~l~ 263 (338)
|+.|.... +.+.++++..||.|.+|.... . .. ...|... ....+..++++ ...+++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55554443 345677888899999995410 0 00 0111111 22356778887 7778888
Q ss_pred EEcCCCcEEEEECCCC--C-eEeEeeCCCCceEEEEEcCCC---c---eEEeec
Q 019603 264 SGSGDGTLHAWNINTR--N-EVACWNGNIGVVACLKWAPRR---A---MFVAAS 308 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~--~-~~~~~~~h~~~v~~l~~~p~~---~---~l~s~s 308 (338)
.++.-..|.||-.... + ....-..|..-|-+|.|-++. . .++++|
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d 235 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD 235 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe
Confidence 8888888888866431 1 111111356778999998865 2 566666
No 471
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.35 E-value=1.4e+02 Score=29.79 Aligned_cols=191 Identities=11% Similarity=0.172 Sum_probs=84.8
Q ss_pred cceEEEEEcCCCCE-EEEEECCCeEEEEECCCcceeeeee-ecCccEE--EEcCCCCEEEEEEcCCeEEEEeCCCCCCCC
Q 019603 118 ERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGILR-LRGRPTV--AFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 193 (338)
Q Consensus 118 ~~V~~l~~~~~~~~-l~Sgs~D~~I~iWd~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 193 (338)
+..-++..+|.... ++ +.--.|+|++. +|+....+. .++ ..+ .|+.+ ..+++...+|.+.+|++-.....+
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecchhhhcc
Confidence 33444555553321 22 44457899987 344333222 232 333 44444 356677889999999864211111
Q ss_pred CeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee-CCCCCCCeeEEECCCCC--E-EEEEc-CC
Q 019603 194 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQ--Y-VVSGS-GD 268 (338)
Q Consensus 194 ~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~fs~~~~--~-l~sgs-~D 268 (338)
. ..-.......|..+.+..+| +++-..+|.+.+.+.....+.....- .......++-+..+++. . ++-.. ..
T Consensus 119 ~-svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v 195 (829)
T KOG2280|consen 119 N-SVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAV 195 (829)
T ss_pred c-ccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhh
Confidence 0 00001112234445554444 44445566666664332212211111 11111111211112211 1 11111 11
Q ss_pred CcEEEEECCCCC-eEeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 269 GTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 269 g~i~vWd~~~~~-~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
+ ..+....+.. ....+.--.+.+.-+..||++++|+--..+.++|...
T Consensus 196 ~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs 244 (829)
T KOG2280|consen 196 G-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVS 244 (829)
T ss_pred h-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEe
Confidence 1 1222222211 1112222235667789999999999888888888755
No 472
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=65.94 E-value=0.97 Score=41.66 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=81.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEE-EEEEcCCeEEEEeCCCCCCCCCeeEEec
Q 019603 122 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF-AVAMEAGAIKLFDSRSYDKGPFDTFLVG 200 (338)
Q Consensus 122 ~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 200 (338)
...|.|.+..++-++.+..+..||-..+.....-.....-.++++.++..+ +.+...+.+.+||+.+.... ....+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq---qLE~g 115 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ---QLESG 115 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH---HHhcc
Confidence 346677777788888899999999543222111111111225667677654 45667889999998653221 11222
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC
Q 019603 201 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 269 (338)
Q Consensus 201 ~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg 269 (338)
+. ..-.-+.|++.....+.+...+.+.|++..+.+.. ...-.|...+++.++.+.+.. +.++.|.
T Consensus 116 g~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i--iv~Gkh~RRgtq~av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 116 GT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI--IVMGKHQRRGTQIAVTLEDYV-ILCDCDN 180 (615)
T ss_pred Cc-chHHHHhhccCCccccccccccceEEEeccchhhh--hhhcccccceeEEEeccccee-eecCcHH
Confidence 21 12222678888888888888889999986544322 122224456677777765433 3344443
No 473
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=64.35 E-value=1.1e+02 Score=30.66 Aligned_cols=101 Identities=11% Similarity=0.199 Sum_probs=52.2
Q ss_pred EEEEcCCCCEEEEEecCC-----cEEEEEccCCeeEEEeee-CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 208 DIKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 208 ~v~~sp~~~~i~~~~~d~-----~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
.+.|-|+|..+++-+.|+ .|+++..+.-+- -.|.+ .+.......++|+.....++ .+....|++|-..+-.=
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceEE
Confidence 478999999999887654 355554321110 01111 11122334455555444443 34566899998765211
Q ss_pred EeEeeCCCCceEEEEEcCC--CceEEeecce
Q 019603 282 VACWNGNIGVVACLKWAPR--RAMFVAASSV 310 (338)
Q Consensus 282 ~~~~~~h~~~v~~l~~~p~--~~~l~s~s~~ 310 (338)
--........+.=+.|+|. ...+++...-
T Consensus 329 YLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~ 359 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEEKNTLLFRDGER 359 (1243)
T ss_pred EEEEeecCCCcceeeeccccCcEEEEecCCe
Confidence 1111122344555788884 4456665543
No 474
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=62.97 E-value=1.3e+02 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.513 Sum_probs=24.2
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
+.+++..+..+.|++..++|.|++|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 77788888889999999999999999974
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=62.60 E-value=18 Score=35.63 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=46.4
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
..++.+.-+|.|+-+++++.||+|+++|...+...+.+.- ..+-..|.|...|-+.++.+...--|.-+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccceEEEeccchhheeecc
Confidence 3456677789999999999999999999976554333321 23334566776666666655555556544
No 476
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.79 E-value=15 Score=20.92 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=16.1
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 019603 258 DGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.+..|+.++.||.++..|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466888899999999999764
No 477
>PRK13684 Ycf48-like protein; Provisional
Probab=61.38 E-value=1.2e+02 Score=27.10 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=72.7
Q ss_pred ccceEEEEEcCCCCEEEEEECCCeEE-EEECCCcceeeeeee---cCccEEEEcCCCCEEEEEEcCCeEEEE--eC-CCC
Q 019603 117 KERVISLCMSPVNDSFMSGSLDHSVR-IWDLRVNACQGILRL---RGRPTVAFDQQGLVFAVAMEAGAIKLF--DS-RSY 189 (338)
Q Consensus 117 ~~~V~~l~~~~~~~~l~Sgs~D~~I~-iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dg~i~i~--d~-~~~ 189 (338)
...+.++.+.|++.+++.+. .|.+. .+|-. ++.-..+.. .....+.+.+++..++++ ..|.+++= |- .+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34678888888876665544 45443 22211 111111111 112235667777766554 45666432 11 111
Q ss_pred CCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee-CCCCCCCeeEEECCCCCEEEEEcCC
Q 019603 190 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~fs~~~~~l~sgs~D 268 (338)
..... ........+..+.+.|++.. ++++.++.+.. ....|+.-...+. ..-+.....+.|..+++.++. +..
T Consensus 249 ~~~~~---~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 322 (334)
T PRK13684 249 SKPII---PEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR 322 (334)
T ss_pred ccccC---CccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence 11000 00012234777889887764 45555665554 3333433222211 122234666777777777664 557
Q ss_pred CcEEEEE
Q 019603 269 GTLHAWN 275 (338)
Q Consensus 269 g~i~vWd 275 (338)
|.|--|+
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 7776665
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=60.17 E-value=23 Score=34.90 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=27.7
Q ss_pred ccceEEEEEcCCCCEEEEEECCCeEEEEECCCc
Q 019603 117 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149 (338)
Q Consensus 117 ~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~ 149 (338)
...++++.-+|.+.-+++++.||.|++|+.-.+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 356778888899999999999999999997433
No 479
>PLN02153 epithiospecifier protein
Probab=59.81 E-value=1.3e+02 Score=26.86 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=15.9
Q ss_pred CCCEEEEeeCC-------CcEEEEEcCCCeeE
Q 019603 38 KDDLLVTASDD-------DSVRLYDIVSAKLI 62 (338)
Q Consensus 38 ~~~~l~s~s~D-------~~i~iWd~~~~~~~ 62 (338)
++++.+.||.+ ..+.+||+.+.+..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 63 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS 63 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEE
Confidence 45666667753 35778888776543
No 480
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.44 E-value=92 Score=31.22 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC-cEEEEECCCCCeE
Q 019603 204 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-TLHAWNINTRNEV 282 (338)
Q Consensus 204 ~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg-~i~vWd~~~~~~~ 282 (338)
..+..+.+++..+++++++..+-+.-.++++|+......+.+.+..- .+-+ .-+-|.|| .+|+||.+.|...
T Consensus 36 ~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~-~~~~------~~~iS~dg~~lr~wn~~~g~l~ 108 (910)
T KOG2103|consen 36 KKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGL-GVPL------TNTISVDGRYLRSWNTNNGILD 108 (910)
T ss_pred eeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCccc-Ccce------eEEEccCCcEEEeecCCCceee
Confidence 35777889998999999999999999999999877655554433211 1111 11234343 6899999988776
Q ss_pred eEeeCCCC
Q 019603 283 ACWNGNIG 290 (338)
Q Consensus 283 ~~~~~h~~ 290 (338)
..+.-|.+
T Consensus 109 ~~i~l~~g 116 (910)
T KOG2103|consen 109 WEIELADG 116 (910)
T ss_pred eecccccc
Confidence 66665555
No 481
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=58.96 E-value=2.1e+02 Score=29.06 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=68.2
Q ss_pred ceEEEEEcCC-CCEEEEEecCCcEEEEEccCCeeE--EEeeeCC-CCC----------CCeeEEECCCCCEEEEEcCCCc
Q 019603 205 EVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEP-SPN----------TNTEATFTPDGQYVVSGSGDGT 270 (338)
Q Consensus 205 ~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~~~~~--~~~~~~~-~~~----------~~~~~~fs~~~~~l~sgs~Dg~ 270 (338)
...+++|+|. .+.+|+....|+-.||++....+. ..+.... ..+ .-..+.|.++-..|+.++. ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 4677899984 458999999999999998221111 1111110 011 1226788888777776654 57
Q ss_pred EEEEECCCCCeEe--EeeCCCCceEEEEEcCC--CceEEeecceEE
Q 019603 271 LHAWNINTRNEVA--CWNGNIGVVACLKWAPR--RAMFVAASSVLS 312 (338)
Q Consensus 271 i~vWd~~~~~~~~--~~~~h~~~v~~l~~~p~--~~~l~s~s~~~~ 312 (338)
+.+.|+.+..... ........|..+.=+|. +..|+-.+..|-
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eii 271 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEII 271 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEE
Confidence 8899998765533 22345578999999988 556666555444
No 482
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=58.09 E-value=26 Score=18.28 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=15.7
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEE
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLY 54 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iW 54 (338)
.+++++++|+++++=+..+.|+++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 467777777777766666656543
No 483
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=55.68 E-value=2.6e+02 Score=29.01 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=51.2
Q ss_pred EEEEEccCCeeEEEeeeCCCC--CCCeeEEECCC-CCEEEEEcC----------CCcEEEEECCCCCeEeEeeCC--CCc
Q 019603 227 IYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPD-GQYVVSGSG----------DGTLHAWNINTRNEVACWNGN--IGV 291 (338)
Q Consensus 227 i~i~~~~~~~~~~~~~~~~~~--~~~~~~~fs~~-~~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~~h--~~~ 291 (338)
++++|..+-+..+.+++.... ..+.++.|.-| +.|++.|.. .|.|.|+...+++.++....+ .|.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 455555555444433333221 23444557766 677776642 467888888775444444222 366
Q ss_pred eEEEEEcCCCceEEeecceEEEeeeC
Q 019603 292 VACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 292 v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
|.+|.- -+++++|+-...++++.+-
T Consensus 832 v~aL~~-fngkllA~In~~vrLye~t 856 (1096)
T KOG1897|consen 832 VYALVE-FNGKLLAGINQSVRLYEWT 856 (1096)
T ss_pred eeehhh-hCCeEEEecCcEEEEEEcc
Confidence 666432 3567788777888886543
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=55.33 E-value=1.9e+02 Score=27.42 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=36.6
Q ss_pred EEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC-CCCeeEEECCCCCEEEEEc--------------CCCcEEE
Q 019603 209 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGS--------------GDGTLHA 273 (338)
Q Consensus 209 v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~fs~~~~~l~sgs--------------~Dg~i~v 273 (338)
+..-++|.++.... ..+..+|.. |+....+.+.... ....++.+-|+|.+|+.+. +|. |..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEE
Confidence 45567787665444 788888874 6666666665422 2234577889999998887 333 455
Q ss_pred EECCCCCeEeEe
Q 019603 274 WNINTRNEVACW 285 (338)
Q Consensus 274 Wd~~~~~~~~~~ 285 (338)
.| .+|+.+..+
T Consensus 229 vd-~tG~vv~~w 239 (477)
T PF05935_consen 229 VD-PTGEVVWEW 239 (477)
T ss_dssp E--TTS-EEEEE
T ss_pred EC-CCCCEEEEE
Confidence 55 666665554
No 485
>PRK13684 Ycf48-like protein; Provisional
Probab=53.68 E-value=1.7e+02 Score=26.24 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=57.4
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 282 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~ 282 (338)
...+..+.+.|++.+++ .+..+.+..-....++.-... .......++.+.+.++++.++.| ..|.+++=..+.+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~-~g~~G~i~~s~~~gg~tW~~~-~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVA-VSSRGNFYSTWEPGQTAWTPH-QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEE-EeCCceEEEEcCCCCCeEEEe-eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 44678888999876554 444555443211222211111 12333567888999999887665 5676653223322211
Q ss_pred eEeeC----CCCceEEEEEcCCCceEEeec
Q 019603 283 ACWNG----NIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 283 ~~~~~----h~~~v~~l~~~p~~~~l~s~s 308 (338)
..... -...+.+++|.|++..++++.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 11111 123578899999988777765
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=52.44 E-value=2.7e+02 Score=28.32 Aligned_cols=113 Identities=13% Similarity=0.153 Sum_probs=60.8
Q ss_pred EEEcCC-CCEEEEEEcCCeEEEEeCCCCC--CCCCeeEE--------e-cCCCCceEEEEEcCCCCEEEEEecCCcEEEE
Q 019603 163 VAFDQQ-GLVFAVAMEAGAIKLFDSRSYD--KGPFDTFL--------V-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 230 (338)
Q Consensus 163 ~~~~~~-~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~--------~-~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~ 230 (338)
++|+|. ...+|+....|+.-+|++.... ........ . ..+...-..+.|.++-..++++. ...+.++
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEE
Confidence 667763 3477777777888888871111 00000000 0 00112233677887777676665 4567888
Q ss_pred EccCCeeEEEeeeCCCCCCCeeEEECCC--CCEEEEEcCCCcEEEEECCC
Q 019603 231 DAYGGEKRCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~fs~~--~~~l~sgs~Dg~i~vWd~~~ 278 (338)
|+.++.....+.......++.++.-+|. +..++-. ...|...++..
T Consensus 230 d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 230 DFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 8876654321222333456777777776 3333322 24677777765
No 487
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=48.98 E-value=2.4e+02 Score=26.74 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=57.1
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCC-CceEEEEEcCCCCEEEEEec-------------CCcEE
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTTT-------------NNNIY 228 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~v~~sp~~~~i~~~~~-------------d~~i~ 228 (338)
+..-++|.++.... ..+..+|+-- . ......+.+.. .-=-.+..-|+|.+++.+.. .+.|.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G-~--v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Iv 227 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLG-K--VIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIV 227 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT-----EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCCC-C--EEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEE
Confidence 44567777665444 5666666421 1 00111111100 00012456788888777762 33566
Q ss_pred EEEccCCeeEEEeeeCCCC-------------------------CCCeeEEECC-CCCEEEEEcCCCcEEEEECCCCCeE
Q 019603 229 VLDAYGGEKRCGFSLEPSP-------------------------NTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEV 282 (338)
Q Consensus 229 i~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~fs~-~~~~l~sgs~Dg~i~vWd~~~~~~~ 282 (338)
.+| .+|+.+..+.+..+. -++.++.+.+ ++.+|+|+=.-..|...|..+++..
T Consensus 228 evd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 228 EVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp EE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred EEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 677 777776655442221 2456788888 5555555544447888888888887
Q ss_pred eEeeCCC
Q 019603 283 ACWNGNI 289 (338)
Q Consensus 283 ~~~~~h~ 289 (338)
-.+-.|.
T Consensus 307 Wilg~~~ 313 (477)
T PF05935_consen 307 WILGPPG 313 (477)
T ss_dssp EEES-ST
T ss_pred EEeCCCC
Confidence 7776553
No 488
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=48.21 E-value=22 Score=20.41 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.2
Q ss_pred eeccCCcceeEEEeecCCCEEEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVT 44 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s 44 (338)
....|.|.++.+.....|++++|
T Consensus 15 v~I~H~g~~Y~LR~Tr~gKLILT 37 (38)
T PF10636_consen 15 VRIEHGGQIYRLRITRQGKLILT 37 (38)
T ss_dssp EEEEETTEEEEEEEETTTEEEEE
T ss_pred EEEEeCCeEEEeeEccCCcEEEc
Confidence 44589999999999999999886
No 489
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=46.98 E-value=43 Score=23.31 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=21.8
Q ss_pred eeEEEeecCCCEEEEee-CCCcEEEEEcC
Q 019603 30 INSLDFHRKDDLLVTAS-DDDSVRLYDIV 57 (338)
Q Consensus 30 V~~l~~s~~~~~l~s~s-~D~~i~iWd~~ 57 (338)
-+++.++|++++|..++ ..++|.+|...
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 36888999998777665 57889998764
No 490
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=45.84 E-value=1.9e+02 Score=24.64 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=70.9
Q ss_pred EEEECCCcceeeeeeecC---ccEEEEcCCCCEEEEEEc---CCeEEEEeCCCCCCCCCeeEEec---CCCCceEEEEEc
Q 019603 142 RIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAME---AGAIKLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFS 212 (338)
Q Consensus 142 ~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---dg~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~v~~s 212 (338)
-+||+.+++... +.... +..-.+-++|.++.+|+. ...+++|+.-..... .+-.... .....--....-
T Consensus 49 ~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~-~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGT-CDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCC-CCceECcccccCCCccccceEC
Confidence 467777665321 11111 111245678988877653 245777774320000 0000000 011122234456
Q ss_pred CCCCEEEEEecCCc-EEEEEccC-CeeEEEeeeCC------CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeE
Q 019603 213 NDGKSMLLTTTNNN-IYVLDAYG-GEKRCGFSLEP------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 284 (338)
Q Consensus 213 p~~~~i~~~~~d~~-i~i~~~~~-~~~~~~~~~~~------~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~ 284 (338)
|||+.+++++.... ..+|.... ......+.+.. ....--.+..-|+|+.++.+..+ -.|||..+.+.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 79999998888753 33443211 11111111111 01111245678999999888765 45679888777777
Q ss_pred eeCC
Q 019603 285 WNGN 288 (338)
Q Consensus 285 ~~~h 288 (338)
|..-
T Consensus 205 lP~l 208 (243)
T PF07250_consen 205 LPDL 208 (243)
T ss_pred CCCC
Confidence 7543
No 491
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=44.96 E-value=1.7e+02 Score=29.95 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=52.7
Q ss_pred EEEEec-CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEE-EcCCC-----cEEEEECCC-CCeEeEeeCCC
Q 019603 218 MLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GSGDG-----TLHAWNINT-RNEVACWNGNI 289 (338)
Q Consensus 218 i~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~s-gs~Dg-----~i~vWd~~~-~~~~~~~~~h~ 289 (338)
|+.... .+++.+.|....+... .+ ..+...+.+-+|||||++|+= .+-++ .|++-|+.+ +..+..|.-..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~-ve-~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRA-VE-IEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceE-EE-ecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 444442 3477777765544332 11 233456777889999999886 44444 499999975 34445666667
Q ss_pred CceEEEEEcCCCc
Q 019603 290 GVVACLKWAPRRA 302 (338)
Q Consensus 290 ~~v~~l~~~p~~~ 302 (338)
..|..-+..++|.
T Consensus 399 aaiprwrv~e~gd 411 (912)
T TIGR02171 399 AAIPRWRVLENGD 411 (912)
T ss_pred ccccceEecCCCC
Confidence 7787777777654
No 492
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=44.36 E-value=71 Score=20.06 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=16.1
Q ss_pred ceeEEEeecCCCEEEEeeC
Q 019603 29 KINSLDFHRKDDLLVTASD 47 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~ 47 (338)
.+.++.+.|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678999999999999864
No 493
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=43.76 E-value=1.9e+02 Score=25.62 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=63.4
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEEccC----Cee-EEEeeeCC-----CCCCCeeEEECCCCCE------------EEE
Q 019603 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYG----GEK-RCGFSLEP-----SPNTNTEATFTPDGQY------------VVS 264 (338)
Q Consensus 207 ~~v~~sp~~~~i~~~~~d~~i~i~~~~~----~~~-~~~~~~~~-----~~~~~~~~~fs~~~~~------------l~s 264 (338)
..+.++|.+...++....+...+||... +.. ........ .+...+.+.|+....+ ++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 4578999888777777778889998751 111 11112111 1234666777643322 567
Q ss_pred EcCCCcEEEEECCCC-----CeEeEeeC-CCCce-EEEEEcC--CCceEEeec---ceEEEee
Q 019603 265 GSGDGTLHAWNINTR-----NEVACWNG-NIGVV-ACLKWAP--RRAMFVAAS---SVLSFWI 315 (338)
Q Consensus 265 gs~Dg~i~vWd~~~~-----~~~~~~~~-h~~~v-~~l~~~p--~~~~l~s~s---~~~~iw~ 315 (338)
+++||+|.-|+-.-. .....+.. ..+.| ..|+..+ .+.+|.++. ..|.++.
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 889999999995311 12233332 23444 4466664 466777775 5677764
No 494
>PRK10183 hypothetical protein; Provisional
Probab=40.73 E-value=69 Score=20.14 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.5
Q ss_pred eeeccCCcceeEEEeecCCCEEEE
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVT 44 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s 44 (338)
..+..|.|..+-++....|++++|
T Consensus 32 ~v~I~H~G~~Y~LR~Tr~GKLILT 55 (56)
T PRK10183 32 KVIIDHDGQEYLLRKTQAGKLLLT 55 (56)
T ss_pred EEEEEECCcEEEeEEccCCceEec
Confidence 345589999999999999999886
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=39.88 E-value=2.6e+02 Score=24.45 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe------cCCcEEEEEccCCeeEEEeeeC--CCCCC
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT------TNNNIYVLDAYGGEKRCGFSLE--PSPNT 249 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~------~d~~i~i~~~~~~~~~~~~~~~--~~~~~ 249 (338)
...+-+||....+...+ ..+-.+.|..+.|..+.+.++.|. ....+..||.........-... .-+.+
T Consensus 15 C~~lC~yd~~~~qW~~~----g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSP----GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CCEEEEEECCCCEeecC----CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 34566677543222111 112356799999986666555553 2345777887665443211101 12356
Q ss_pred CeeEEECC-CCC-EEEEEc-CCC--cEEEEECCCCCeEeE-eeCCCCceEEEEEc
Q 019603 250 NTEATFTP-DGQ-YVVSGS-GDG--TLHAWNINTRNEVAC-WNGNIGVVACLKWA 298 (338)
Q Consensus 250 ~~~~~fs~-~~~-~l~sgs-~Dg--~i~vWd~~~~~~~~~-~~~h~~~v~~l~~~ 298 (338)
++.+.+.. |+. +.+.|. .++ .|..||=.+...+.. .......|..|.+-
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 66666532 333 333332 333 467776555544443 22234455555443
No 496
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.26 E-value=2.4e+02 Score=23.99 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=59.5
Q ss_pred EEEEEcCCCCEEEE-EecCCcEEEEE--ccCCee---EEEeeeCC----CCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 207 CDIKFSNDGKSMLL-TTTNNNIYVLD--AYGGEK---RCGFSLEP----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 207 ~~v~~sp~~~~i~~-~~~d~~i~i~~--~~~~~~---~~~~~~~~----~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
+.+.|+.+.+.+.. -+.+-+|.-|| ..+|.. ...+.++. .+......+....|.+.++.=..++|.-.|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 35677766664443 34455665555 444421 11222221 0111223455667787777777789999999
Q ss_pred CCCCeEeEeeCCCCceEEEEEcCC
Q 019603 277 NTRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 277 ~~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
.++|.+..++-....|+|.+|--.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCC
Confidence 999999999988999999999754
No 497
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=38.70 E-value=2.2e+02 Score=23.22 Aligned_cols=69 Identities=7% Similarity=0.065 Sum_probs=39.5
Q ss_pred CcEEEEEcCCCeeEeEEeecc--c--CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCc
Q 019603 49 DSVRLYDIVSAKLIKTTYHKK--H--GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHK 117 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~ 117 (338)
|.|.|.|+.++.......... . +-....+....-.++.+..++..+.|+.+.++++.+++....+..+.
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccc
Confidence 568888988777543222211 1 11122222222233344456666788999999999988776665433
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.12 E-value=2.7e+02 Score=24.27 Aligned_cols=37 Identities=19% Similarity=0.463 Sum_probs=28.3
Q ss_pred cCCcceeEEEeecCCCEEEEee------CCCcEEEEEcCCCee
Q 019603 25 DFGGKINSLDFHRKDDLLVTAS------DDDSVRLYDIVSAKL 61 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s------~D~~i~iWd~~~~~~ 61 (338)
+-.|.|+.+.|..+.++++.|. ....+..||+.+...
T Consensus 34 ~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 34 GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 3468999999997777777765 456788999887654
No 499
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=38.02 E-value=75 Score=17.78 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=20.4
Q ss_pred EEEEcCCCcEEEEECCCCCeEeEee
Q 019603 262 VVSGSGDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 262 l~sgs~Dg~i~vWd~~~~~~~~~~~ 286 (338)
++.++.||.|+-.|.++|+.+=.++
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4566899999999999998876654
No 500
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=38.00 E-value=1.1e+02 Score=23.34 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred ECCCCCEEEEEc-CCCcEEEEECCCC--CeEeEee-CCCCceEEEEEcCCCceEEeecceEEEeee
Q 019603 255 FTPDGQYVVSGS-GDGTLHAWNINTR--NEVACWN-GNIGVVACLKWAPRRAMFVAASSVLSFWIP 316 (338)
Q Consensus 255 fs~~~~~l~sgs-~Dg~i~vWd~~~~--~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~ 316 (338)
|.+|...|+.+| +|+.||.+.+... .....-. .+.....+++|-|....=+...+..++++.
T Consensus 18 yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK~~~dv~~~Ei~R~lkl 83 (136)
T PF08954_consen 18 YDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPKRACDVMKCEIARFLKL 83 (136)
T ss_dssp E-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--GGGS-GGGTEEEEEEEE
T ss_pred EcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCcccCCchheeeeeeeee
Done!