Query 019603
Match_columns 338
No_of_seqs 186 out of 1962
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.7E-46 5.9E-51 344.4 39.8 285 20-316 101-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.3E-45 4.6E-50 330.1 42.6 288 17-315 45-340 (340)
3 2ynn_A Coatomer subunit beta'; 100.0 2.2E-45 7.5E-50 323.7 43.1 289 17-316 3-300 (304)
4 2pbi_B Guanine nucleotide-bind 100.0 8.3E-45 2.8E-49 326.9 42.4 288 18-315 55-354 (354)
5 3ow8_A WD repeat-containing pr 100.0 6.2E-45 2.1E-49 323.3 39.4 285 21-317 26-320 (321)
6 4ery_A WD repeat-containing pr 100.0 1E-43 3.5E-48 313.6 43.4 293 16-317 12-311 (312)
7 3iz6_a 40S ribosomal protein R 100.0 1.8E-44 6.3E-49 327.6 35.3 292 17-317 56-374 (380)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-42 6.1E-47 310.5 39.3 296 16-319 4-336 (345)
9 3frx_A Guanine nucleotide-bind 100.0 6.3E-42 2.2E-46 303.6 39.8 289 14-317 4-316 (319)
10 4g56_B MGC81050 protein; prote 100.0 8.2E-43 2.8E-47 314.2 33.1 285 22-318 37-343 (357)
11 1erj_A Transcriptional repress 100.0 9.7E-42 3.3E-46 311.1 40.3 285 25-318 62-389 (393)
12 1nr0_A Actin interacting prote 100.0 2.4E-42 8.2E-47 332.4 38.1 290 17-316 180-609 (611)
13 4gqb_B Methylosome protein 50; 100.0 1.3E-42 4.6E-47 311.1 33.1 283 23-318 26-331 (344)
14 1nr0_A Actin interacting prote 100.0 1.5E-41 5E-46 326.9 38.9 293 19-318 139-567 (611)
15 2xzm_R RACK1; ribosome, transl 100.0 5.7E-41 2E-45 300.4 40.1 288 15-317 9-339 (343)
16 2hes_X YDR267CP; beta-propelle 100.0 8.7E-41 3E-45 297.7 37.8 292 15-317 2-327 (330)
17 3zwl_B Eukaryotic translation 100.0 8.8E-39 3E-43 286.8 39.9 294 12-318 17-346 (369)
18 2ymu_A WD-40 repeat protein; u 100.0 7.6E-39 2.6E-43 305.2 41.3 280 18-315 294-577 (577)
19 3dm0_A Maltose-binding peripla 100.0 8.1E-39 2.8E-43 312.2 39.9 292 12-317 367-692 (694)
20 1sq9_A Antiviral protein SKI8; 100.0 8.7E-39 3E-43 290.6 35.9 288 17-317 6-394 (397)
21 3ei3_B DNA damage-binding prot 100.0 1.2E-38 4.1E-43 289.0 36.6 294 13-317 59-381 (383)
22 4aow_A Guanine nucleotide-bind 100.0 8.8E-38 3E-42 277.8 41.1 290 14-317 25-336 (340)
23 2pm7_B Protein transport prote 100.0 1.2E-38 4.2E-43 279.6 35.0 252 19-318 1-285 (297)
24 3ow8_A WD repeat-containing pr 100.0 3.5E-38 1.2E-42 279.8 36.8 247 19-277 72-320 (321)
25 4h5i_A Guanine nucleotide-exch 100.0 1.5E-37 5.1E-42 280.7 39.3 291 26-319 13-344 (365)
26 1vyh_C Platelet-activating fac 100.0 1.2E-38 4E-43 292.3 31.5 250 16-277 139-410 (410)
27 1gxr_A ESG1, transducin-like e 100.0 3.4E-37 1.2E-41 273.3 39.0 279 22-316 46-335 (337)
28 3odt_A Protein DOA1; ubiquitin 100.0 4.7E-37 1.6E-41 269.8 38.7 286 15-320 6-298 (313)
29 4gqb_B Methylosome protein 50; 100.0 1.9E-37 6.3E-42 277.7 35.0 245 23-281 78-334 (344)
30 2ymu_A WD-40 repeat protein; u 100.0 1.2E-36 3.9E-41 290.1 42.4 283 17-317 252-538 (577)
31 3i2n_A WD repeat-containing pr 100.0 7.4E-38 2.5E-42 279.9 31.8 287 21-318 12-353 (357)
32 1r5m_A SIR4-interacting protei 100.0 7.6E-37 2.6E-41 279.4 38.1 280 24-317 42-424 (425)
33 1got_B GT-beta; complex (GTP-b 100.0 3.4E-37 1.2E-41 275.5 34.4 249 16-275 86-340 (340)
34 3k26_A Polycomb protein EED; W 100.0 3.6E-37 1.2E-41 276.2 34.3 287 22-316 13-364 (366)
35 3bg1_A Protein SEC13 homolog; 100.0 3.9E-38 1.3E-42 278.9 25.4 250 22-318 8-293 (316)
36 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-36 7.3E-41 272.1 37.1 287 22-317 3-360 (372)
37 3dw8_B Serine/threonine-protei 100.0 1.5E-36 5.1E-41 280.2 37.0 282 25-315 26-443 (447)
38 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-36 1.1E-40 298.3 41.8 290 16-316 2-300 (814)
39 4e54_B DNA damage-binding prot 100.0 3.7E-37 1.3E-41 284.4 32.8 297 15-319 107-431 (435)
40 3mmy_A MRNA export factor; mRN 100.0 4.9E-37 1.7E-41 275.3 32.4 286 14-309 26-335 (368)
41 3gre_A Serine/threonine-protei 100.0 2.9E-37 1E-41 284.7 30.5 288 18-315 53-437 (437)
42 1yfq_A Cell cycle arrest prote 100.0 3E-36 1E-40 268.3 34.2 277 19-309 3-312 (342)
43 3frx_A Guanine nucleotide-bind 100.0 3.7E-36 1.3E-40 266.5 34.3 248 19-279 57-318 (319)
44 3vl1_A 26S proteasome regulato 100.0 1.6E-36 5.4E-41 277.9 32.5 284 22-317 93-418 (420)
45 2ynn_A Coatomer subunit beta'; 100.0 1E-35 3.6E-40 261.8 35.9 246 62-317 6-258 (304)
46 2pm9_A Protein WEB1, protein t 100.0 5.5E-37 1.9E-41 280.3 28.2 282 25-317 65-413 (416)
47 3v7d_B Cell division control p 100.0 3.9E-35 1.3E-39 272.5 40.4 283 19-319 113-422 (464)
48 4g56_B MGC81050 protein; prote 100.0 3.8E-36 1.3E-40 270.7 30.8 249 19-281 86-346 (357)
49 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-35 8.4E-40 264.1 35.6 258 23-286 57-343 (345)
50 4gga_A P55CDC, cell division c 100.0 1.3E-34 4.5E-39 266.1 40.7 276 29-317 107-394 (420)
51 3dwl_C Actin-related protein 2 100.0 3E-37 1E-41 278.9 22.7 289 19-315 3-376 (377)
52 2pm9_A Protein WEB1, protein t 100.0 1.4E-36 4.6E-41 277.7 27.2 282 26-319 11-338 (416)
53 2pbi_B Guanine nucleotide-bind 100.0 1.4E-35 4.9E-40 266.6 33.2 248 18-275 97-354 (354)
54 4a11_B DNA excision repair pro 100.0 4.2E-35 1.4E-39 266.6 36.6 296 18-321 34-368 (408)
55 3vl1_A 26S proteasome regulato 100.0 3.2E-36 1.1E-40 275.9 28.7 279 29-318 58-365 (420)
56 4aez_A CDC20, WD repeat-contai 100.0 5.9E-35 2E-39 266.7 36.8 283 24-321 88-383 (401)
57 2hes_X YDR267CP; beta-propelle 100.0 2.8E-35 9.7E-40 262.1 33.5 254 18-278 47-328 (330)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-34 6.7E-39 266.7 40.1 283 16-318 148-442 (445)
59 3f3f_A Nucleoporin SEH1; struc 100.0 3.6E-35 1.2E-39 260.5 33.8 263 20-319 4-338 (351)
60 3jrp_A Fusion protein of prote 100.0 3.2E-35 1.1E-39 264.7 33.0 255 19-279 3-288 (379)
61 2xzm_R RACK1; ribosome, transl 100.0 4.6E-35 1.6E-39 262.0 33.5 249 19-279 68-341 (343)
62 4ggc_A P55CDC, cell division c 100.0 6.2E-34 2.1E-38 250.6 39.6 275 30-317 28-314 (318)
63 3iz6_a 40S ribosomal protein R 100.0 8.4E-36 2.9E-40 270.6 27.5 256 17-280 98-377 (380)
64 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-34 4.5E-39 299.1 39.4 288 20-317 608-912 (1249)
65 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-35 9.8E-40 304.0 34.2 296 15-318 645-1034(1249)
66 2j04_B YDR362CP, TAU91; beta p 100.0 4.2E-36 1.4E-40 282.6 24.9 284 21-319 201-518 (524)
67 2oaj_A Protein SNI1; WD40 repe 100.0 8.3E-35 2.8E-39 290.7 35.7 293 19-319 91-662 (902)
68 3v7d_B Cell division control p 100.0 7.6E-34 2.6E-38 263.8 38.1 283 15-315 150-460 (464)
69 1gxr_A ESG1, transducin-like e 100.0 3.2E-34 1.1E-38 254.1 33.9 278 26-318 8-296 (337)
70 1p22_A F-BOX/WD-repeat protein 100.0 3.1E-34 1.1E-38 264.7 35.1 273 23-319 129-415 (435)
71 1pgu_A Actin interacting prote 100.0 5.5E-34 1.9E-38 273.0 38.0 288 18-318 151-572 (615)
72 1erj_A Transcriptional repress 100.0 4.5E-34 1.6E-38 260.3 34.7 243 27-278 123-389 (393)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-33 8.7E-38 259.2 39.9 280 16-318 107-391 (445)
74 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-35 1.2E-39 268.2 24.9 282 27-318 34-342 (402)
75 4ery_A WD repeat-containing pr 100.0 1.9E-33 6.4E-38 247.8 35.1 248 18-277 56-311 (312)
76 3vu4_A KMHSV2; beta-propeller 100.0 5.9E-33 2E-37 249.6 35.4 289 18-321 10-339 (355)
77 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-34 6.3E-39 267.2 26.1 264 24-317 12-296 (588)
78 4aez_A CDC20, WD repeat-contai 100.0 7.3E-33 2.5E-37 252.9 36.0 252 21-285 127-387 (401)
79 1pgu_A Actin interacting prote 100.0 7.3E-33 2.5E-37 265.2 36.6 286 18-317 54-365 (615)
80 3dm0_A Maltose-binding peripla 100.0 1.2E-32 4.2E-37 268.6 35.1 247 19-277 422-692 (694)
81 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-33 5.8E-38 281.2 29.4 207 114-321 432-735 (902)
82 3k26_A Polycomb protein EED; W 100.0 1.3E-33 4.5E-38 253.0 24.9 245 26-278 68-366 (366)
83 4aow_A Guanine nucleotide-bind 100.0 1.1E-31 3.8E-36 238.3 35.6 251 18-280 77-339 (340)
84 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.6E-32 2.6E-36 249.8 35.9 283 26-319 3-392 (450)
85 1sq9_A Antiviral protein SKI8; 100.0 8.1E-33 2.8E-37 251.3 28.2 253 17-280 52-397 (397)
86 4gga_A P55CDC, cell division c 100.0 1.4E-31 4.9E-36 245.8 36.0 261 22-297 142-414 (420)
87 3mkq_A Coatomer beta'-subunit; 100.0 8.8E-32 3E-36 266.4 37.0 288 16-316 44-384 (814)
88 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-33 8E-38 263.9 24.1 260 25-317 131-427 (524)
89 3jro_A Fusion protein of prote 100.0 6E-33 2E-37 273.0 27.7 253 20-278 2-285 (753)
90 1r5m_A SIR4-interacting protei 100.0 4.6E-32 1.6E-36 247.6 31.3 247 17-277 139-424 (425)
91 3dwl_C Actin-related protein 2 100.0 7.6E-33 2.6E-37 250.0 24.9 243 68-317 10-280 (377)
92 2aq5_A Coronin-1A; WD40 repeat 100.0 4.2E-32 1.4E-36 247.8 28.3 254 19-281 73-345 (402)
93 4h5i_A Guanine nucleotide-exch 100.0 2.3E-32 7.8E-37 246.7 26.1 249 21-278 67-343 (365)
94 3ei3_B DNA damage-binding prot 100.0 1.6E-31 5.6E-36 242.0 31.3 242 24-278 115-382 (383)
95 3jrp_A Fusion protein of prote 100.0 3.5E-31 1.2E-35 238.3 33.2 250 60-317 2-286 (379)
96 3zwl_B Eukaryotic translation 100.0 5.3E-31 1.8E-35 236.1 34.3 260 15-283 62-351 (369)
97 3lrv_A PRE-mRNA-splicing facto 100.0 5.4E-32 1.8E-36 242.0 27.1 263 34-315 43-330 (343)
98 4gq1_A NUP37; propeller, trans 100.0 1.9E-32 6.5E-37 249.7 24.2 247 26-315 88-386 (393)
99 1k8k_C P40, ARP2/3 complex 41 100.0 4.4E-31 1.5E-35 237.4 32.2 244 67-318 6-274 (372)
100 3i2n_A WD repeat-containing pr 100.0 1E-31 3.5E-36 240.1 27.5 252 24-281 62-356 (357)
101 4ggc_A P55CDC, cell division c 100.0 2.9E-30 9.9E-35 227.1 35.3 243 23-280 63-317 (318)
102 4e54_B DNA damage-binding prot 100.0 1.3E-31 4.5E-36 247.2 25.6 249 20-281 157-433 (435)
103 1p22_A F-BOX/WD-repeat protein 100.0 5E-31 1.7E-35 243.3 28.7 263 16-299 162-434 (435)
104 2pm7_B Protein transport prote 100.0 7.5E-31 2.6E-35 230.0 27.9 206 111-318 3-238 (297)
105 2w18_A PALB2, fancn, partner a 100.0 6.2E-30 2.1E-34 223.5 32.5 300 6-316 14-355 (356)
106 3bws_A Protein LP49; two-domai 100.0 9.7E-30 3.3E-34 233.8 34.4 284 18-317 114-431 (433)
107 3odt_A Protein DOA1; ubiquitin 100.0 6.7E-30 2.3E-34 224.0 31.6 248 17-285 49-303 (313)
108 3gre_A Serine/threonine-protei 100.0 5.4E-31 1.9E-35 242.7 24.8 264 34-317 34-358 (437)
109 2xyi_A Probable histone-bindin 100.0 4.5E-30 1.5E-34 236.7 30.9 250 21-278 122-410 (430)
110 4a11_B DNA excision repair pro 100.0 7.7E-30 2.6E-34 231.8 31.2 282 24-317 96-404 (408)
111 2xyi_A Probable histone-bindin 100.0 2.6E-29 8.7E-34 231.6 32.9 285 27-319 45-411 (430)
112 3dw8_B Serine/threonine-protei 100.0 3.2E-29 1.1E-33 231.1 31.2 249 16-277 70-445 (447)
113 1l0q_A Surface layer protein; 100.0 5.4E-28 1.9E-32 219.2 37.2 259 17-291 22-288 (391)
114 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-29 4.5E-34 234.8 25.0 266 17-309 42-350 (588)
115 1l0q_A Surface layer protein; 100.0 1E-27 3.6E-32 217.3 37.0 262 40-317 3-274 (391)
116 3bg1_A Protein SEC13 homolog; 100.0 8.2E-30 2.8E-34 225.4 22.1 205 112-318 8-247 (316)
117 3jro_A Fusion protein of prote 100.0 3.4E-29 1.2E-33 246.3 28.3 246 64-317 4-284 (753)
118 2w18_A PALB2, fancn, partner a 100.0 5.9E-29 2E-33 217.3 25.0 216 27-276 111-355 (356)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.3E-27 4.5E-32 221.3 32.1 238 70-316 5-337 (450)
120 1yfq_A Cell cycle arrest prote 100.0 8.1E-28 2.8E-32 213.7 28.3 237 66-317 8-281 (342)
121 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-27 7.5E-32 210.2 24.8 256 18-285 48-344 (351)
122 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.4E-27 2.5E-31 214.2 28.5 279 26-318 61-385 (415)
123 3vu4_A KMHSV2; beta-propeller 100.0 5E-26 1.7E-30 204.4 33.0 247 53-319 3-272 (355)
124 3bws_A Protein LP49; two-domai 100.0 8.2E-26 2.8E-30 207.6 32.7 243 22-278 164-432 (433)
125 3mmy_A MRNA export factor; mRN 100.0 6.3E-26 2.2E-30 202.9 30.2 250 55-317 25-303 (368)
126 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-26 4.4E-31 207.1 23.1 214 95-318 56-292 (343)
127 2ecf_A Dipeptidyl peptidase IV 99.9 5.3E-25 1.8E-29 215.9 33.0 279 27-318 36-413 (741)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 7E-25 2.4E-29 201.0 29.9 266 21-302 111-410 (415)
129 1nir_A Nitrite reductase; hemo 99.9 2.3E-24 7.9E-29 203.9 33.2 275 34-320 144-460 (543)
130 1nir_A Nitrite reductase; hemo 99.9 7.9E-24 2.7E-28 200.3 33.8 290 16-317 168-513 (543)
131 4gq1_A NUP37; propeller, trans 99.9 4.1E-26 1.4E-30 207.7 16.3 223 19-276 128-387 (393)
132 3vgz_A Uncharacterized protein 99.9 4.8E-23 1.7E-27 183.6 35.2 271 25-308 38-332 (353)
133 3u4y_A Uncharacterized protein 99.9 2.4E-23 8.3E-28 184.2 32.5 275 33-317 3-303 (331)
134 1ri6_A Putative isomerase YBHE 99.9 2.5E-22 8.6E-27 178.0 32.9 271 41-319 7-309 (343)
135 2ojh_A Uncharacterized protein 99.9 3.2E-23 1.1E-27 179.4 26.2 253 44-309 17-291 (297)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3.5E-23 1.2E-27 202.4 26.0 285 28-319 17-394 (723)
137 2z3z_A Dipeptidyl aminopeptida 99.9 4.6E-23 1.6E-27 201.1 26.4 274 30-320 28-391 (706)
138 1ri6_A Putative isomerase YBHE 99.9 1.8E-21 6.2E-26 172.4 34.0 269 24-302 34-335 (343)
139 3o4h_A Acylamino-acid-releasin 99.9 2.6E-22 9E-27 191.6 29.2 271 27-319 21-314 (582)
140 1pby_B Quinohemoprotein amine 99.9 4.6E-22 1.6E-26 175.8 28.0 261 40-317 2-309 (337)
141 3hfq_A Uncharacterized protein 99.9 1E-20 3.6E-25 168.6 34.3 269 46-320 13-319 (347)
142 1k32_A Tricorn protease; prote 99.9 1.7E-21 5.9E-26 198.0 32.3 286 19-317 44-460 (1045)
143 1k32_A Tricorn protease; prote 99.9 9.3E-22 3.2E-26 200.0 29.6 268 21-309 197-491 (1045)
144 2ecf_A Dipeptidyl peptidase IV 99.9 2.9E-22 9.9E-27 196.5 24.6 264 29-308 110-443 (741)
145 1xfd_A DIP, dipeptidyl aminope 99.9 4E-22 1.4E-26 194.8 24.7 277 18-307 48-427 (723)
146 2z3z_A Dipeptidyl aminopeptida 99.9 3.1E-21 1.1E-25 188.2 30.2 274 28-317 82-434 (706)
147 3u4y_A Uncharacterized protein 99.9 3.8E-20 1.3E-24 163.6 33.1 274 18-301 31-326 (331)
148 2ojh_A Uncharacterized protein 99.9 5.5E-21 1.9E-25 165.3 24.9 241 20-269 34-293 (297)
149 1pby_B Quinohemoprotein amine 99.9 1.2E-20 4E-25 166.8 26.6 249 29-288 35-320 (337)
150 3scy_A Hypothetical bacterial 99.9 1.9E-19 6.6E-24 161.4 32.4 265 26-298 48-360 (361)
151 3hfq_A Uncharacterized protein 99.9 1.5E-19 5.1E-24 161.1 30.2 252 24-282 36-323 (347)
152 3pe7_A Oligogalacturonate lyas 99.9 6E-20 2.1E-24 166.0 27.3 290 18-319 21-383 (388)
153 1jmx_B Amine dehydrogenase; ox 99.9 2.2E-19 7.7E-24 159.4 30.4 242 32-288 4-335 (349)
154 3scy_A Hypothetical bacterial 99.9 2.6E-18 9E-23 153.9 36.2 278 39-321 13-340 (361)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 7.2E-21 2.5E-25 175.2 18.5 222 27-319 36-279 (434)
156 1z68_A Fibroblast activation p 99.8 6E-20 2.1E-24 179.5 21.0 283 31-318 19-391 (719)
157 3vgz_A Uncharacterized protein 99.8 1.3E-17 4.3E-22 148.4 29.0 241 70-317 41-302 (353)
158 4a5s_A Dipeptidyl peptidase 4 99.8 1.3E-18 4.4E-23 170.8 24.2 285 26-319 15-399 (740)
159 3azo_A Aminopeptidase; POP fam 99.8 4.9E-18 1.7E-22 164.4 27.9 290 21-319 17-368 (662)
160 2oiz_A Aromatic amine dehydrog 99.8 1.9E-17 6.4E-22 148.8 29.2 273 17-302 41-360 (361)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.7E-17 1.3E-21 147.0 30.8 251 26-279 38-342 (365)
162 3c5m_A Oligogalacturonate lyas 99.8 2.4E-18 8.2E-23 155.5 22.2 285 19-319 22-383 (396)
163 1z68_A Fibroblast activation p 99.8 1.1E-18 3.9E-23 170.5 21.0 265 29-307 61-427 (719)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.1E-17 1.4E-21 146.6 29.4 270 42-319 5-342 (365)
165 3o4h_A Acylamino-acid-releasin 99.8 1.5E-18 5.3E-23 165.5 20.3 231 69-316 21-274 (582)
166 1jmx_B Amine dehydrogenase; ox 99.8 3.1E-17 1.1E-21 145.5 26.4 214 96-317 20-324 (349)
167 1q7f_A NHL, brain tumor CG1071 99.8 6E-16 2E-20 134.0 32.4 245 25-318 27-280 (286)
168 2oit_A Nucleoporin 214KDA; NH2 99.8 4.7E-17 1.6E-21 149.7 25.9 202 25-232 90-331 (434)
169 3fvz_A Peptidyl-glycine alpha- 99.8 1.4E-16 4.8E-21 141.2 24.9 264 27-317 23-321 (329)
170 2gop_A Trilobed protease; beta 99.8 2.2E-15 7.6E-20 133.8 29.6 261 28-317 15-330 (347)
171 2oiz_A Aromatic amine dehydrog 99.7 1.1E-15 3.7E-20 137.3 27.0 273 38-317 14-333 (361)
172 3e5z_A Putative gluconolactona 99.7 1E-14 3.5E-19 126.9 32.2 244 12-318 12-284 (296)
173 2dg1_A DRP35, lactonase; beta 99.7 5.2E-15 1.8E-19 130.8 28.6 276 27-318 5-314 (333)
174 3pe7_A Oligogalacturonate lyas 99.7 1E-15 3.5E-20 138.1 22.7 243 53-306 14-306 (388)
175 2xdw_A Prolyl endopeptidase; a 99.7 1.6E-14 5.6E-19 141.0 31.4 252 25-280 122-416 (710)
176 4a5s_A Dipeptidyl peptidase 4 99.7 2.8E-15 9.4E-20 147.1 25.3 276 20-307 49-433 (740)
177 2z2n_A Virginiamycin B lyase; 99.7 2.5E-12 8.6E-17 111.2 38.4 274 23-314 10-291 (299)
178 2bkl_A Prolyl endopeptidase; m 99.7 1.5E-14 5.3E-19 140.8 24.7 257 25-288 118-406 (695)
179 3dsm_A Uncharacterized protein 99.7 2.5E-13 8.6E-18 120.1 30.0 254 47-317 15-301 (328)
180 3c5m_A Oligogalacturonate lyas 99.6 1.8E-14 6.2E-19 129.9 20.6 242 54-307 15-300 (396)
181 3azo_A Aminopeptidase; POP fam 99.6 4.4E-14 1.5E-18 136.6 23.6 290 20-319 60-412 (662)
182 2gop_A Trilobed protease; beta 99.6 6.4E-13 2.2E-17 117.9 27.0 241 28-291 59-342 (347)
183 3dsm_A Uncharacterized protein 99.6 1.5E-12 5.3E-17 115.1 29.0 244 28-286 44-309 (328)
184 2dg1_A DRP35, lactonase; beta 99.6 4.5E-12 1.6E-16 111.8 31.9 244 21-269 38-301 (333)
185 2qc5_A Streptogramin B lactona 99.6 2.7E-11 9.4E-16 104.7 36.1 276 24-318 16-298 (300)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.6E-12 5.6E-17 126.8 30.5 264 37-306 81-396 (710)
187 1rwi_B Serine/threonine-protei 99.6 1.2E-12 4E-17 111.9 25.6 240 29-281 25-267 (270)
188 1qks_A Cytochrome CD1 nitrite 99.6 1.7E-11 5.7E-16 116.0 35.0 272 36-319 164-478 (567)
189 1yr2_A Prolyl oligopeptidase; 99.6 8.9E-13 3E-17 129.3 27.0 255 25-286 160-448 (741)
190 3no2_A Uncharacterized protein 99.6 4.4E-12 1.5E-16 109.3 27.2 219 37-307 3-230 (276)
191 1qks_A Cytochrome CD1 nitrite 99.6 1.9E-11 6.5E-16 115.6 33.3 270 27-307 196-520 (567)
192 1q7f_A NHL, brain tumor CG1071 99.5 5.8E-12 2E-16 108.7 26.2 196 114-316 26-236 (286)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.7E-11 1.6E-15 104.1 30.7 237 28-316 18-297 (314)
194 1rwi_B Serine/threonine-protei 99.5 1E-11 3.5E-16 106.0 25.5 214 96-317 45-263 (270)
195 3fvz_A Peptidyl-glycine alpha- 99.5 3.7E-12 1.3E-16 112.6 23.3 222 47-278 67-322 (329)
196 2mad_H Methylamine dehydrogena 99.5 3.3E-10 1.1E-14 101.8 35.4 241 32-285 70-357 (373)
197 3e5z_A Putative gluconolactona 99.5 2.1E-12 7.3E-17 112.1 20.3 196 113-317 23-245 (296)
198 2bkl_A Prolyl endopeptidase; m 99.5 3.5E-12 1.2E-16 124.2 22.7 199 115-318 118-349 (695)
199 2mad_H Methylamine dehydrogena 99.5 3.3E-10 1.1E-14 101.8 33.9 275 34-317 27-349 (373)
200 3g4e_A Regucalcin; six bladed 99.5 2E-10 6.9E-15 99.8 30.4 230 23-308 8-260 (297)
201 3sjl_D Methylamine dehydrogena 99.4 8.5E-11 2.9E-15 105.1 26.5 270 17-300 69-384 (386)
202 2qe8_A Uncharacterized protein 99.4 1.5E-11 5.2E-16 109.3 20.6 270 16-308 8-309 (343)
203 3sjl_D Methylamine dehydrogena 99.4 1.7E-10 5.7E-15 103.2 26.3 278 33-317 38-362 (386)
204 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-10 4.1E-15 114.2 27.6 261 36-305 115-422 (741)
205 3iuj_A Prolyl endopeptidase; h 99.4 1E-10 3.5E-15 113.8 26.2 249 25-281 126-408 (693)
206 1xip_A Nucleoporin NUP159; bet 99.4 1.9E-11 6.7E-16 109.5 18.6 171 119-307 39-231 (388)
207 3no2_A Uncharacterized protein 99.4 1.7E-10 5.8E-15 99.3 23.7 171 129-308 5-183 (276)
208 3hrp_A Uncharacterized protein 99.4 1.2E-09 4.1E-14 99.4 30.4 235 29-276 132-408 (409)
209 2z2n_A Virginiamycin B lyase; 99.4 5.1E-09 1.8E-13 90.2 32.2 237 25-279 54-296 (299)
210 3c75_H MADH, methylamine dehyd 99.4 3.7E-10 1.3E-14 102.6 25.4 243 32-285 122-409 (426)
211 3c75_H MADH, methylamine dehyd 99.4 2.9E-10 9.9E-15 103.3 24.6 276 37-317 82-401 (426)
212 3dr2_A Exported gluconolactona 99.4 4.2E-09 1.4E-13 91.8 31.1 228 19-308 36-295 (305)
213 2ghs_A AGR_C_1268P; regucalcin 99.4 4.9E-09 1.7E-13 92.4 31.4 180 118-307 90-289 (326)
214 3hrp_A Uncharacterized protein 99.3 3.6E-09 1.2E-13 96.3 28.5 212 95-314 150-404 (409)
215 2qc5_A Streptogramin B lactona 99.3 4.2E-08 1.4E-12 84.4 31.4 209 97-315 41-257 (300)
216 1mda_H Methylamine dehydrogena 99.2 2.7E-10 9.4E-15 101.7 16.9 266 15-300 54-367 (368)
217 1xip_A Nucleoporin NUP159; bet 99.2 5.7E-10 2E-14 100.0 18.0 174 71-265 39-231 (388)
218 1yiq_A Quinohemoprotein alcoho 99.2 3E-08 1E-12 96.2 30.4 264 39-306 121-534 (689)
219 1kb0_A Quinohemoprotein alcoho 99.2 7.4E-08 2.5E-12 93.2 30.4 263 38-306 127-536 (677)
220 3iuj_A Prolyl endopeptidase; h 99.1 3E-09 1E-13 103.4 20.5 186 115-308 126-344 (693)
221 2hz6_A Endoplasmic reticulum t 99.1 5.6E-11 1.9E-15 106.8 6.3 203 38-303 8-217 (369)
222 2qe8_A Uncharacterized protein 99.1 3.2E-09 1.1E-13 94.2 15.1 236 25-275 64-318 (343)
223 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 3.5E-08 1.2E-12 85.7 21.4 192 116-316 16-254 (314)
224 1mda_H Methylamine dehydrogena 99.0 3.6E-08 1.2E-12 88.0 20.9 262 41-317 34-345 (368)
225 3g4e_A Regucalcin; six bladed 99.0 9.1E-08 3.1E-12 82.9 22.9 191 115-315 10-226 (297)
226 2ghs_A AGR_C_1268P; regucalcin 99.0 1.9E-07 6.4E-12 82.1 23.6 186 119-315 50-257 (326)
227 3dr2_A Exported gluconolactona 99.0 2.5E-08 8.7E-13 86.8 17.7 193 113-315 40-264 (305)
228 1kb0_A Quinohemoprotein alcoho 99.0 2.1E-07 7E-12 90.1 25.5 267 39-315 77-504 (677)
229 2ece_A 462AA long hypothetical 99.0 1.8E-06 6.3E-11 77.9 29.7 210 96-308 105-399 (462)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.0 4.2E-06 1.4E-10 74.8 32.1 256 38-314 102-374 (376)
231 1yiq_A Quinohemoprotein alcoho 99.0 4.9E-07 1.7E-11 87.7 26.8 268 39-315 70-502 (689)
232 1npe_A Nidogen, entactin; glyc 98.9 1E-05 3.6E-10 68.6 31.8 249 40-302 2-263 (267)
233 2ece_A 462AA long hypothetical 98.9 7.8E-07 2.7E-11 80.3 25.3 228 37-266 93-399 (462)
234 3q7m_A Lipoprotein YFGL, BAMB; 98.9 4E-06 1.4E-10 74.9 28.9 231 38-286 52-304 (376)
235 3nol_A Glutamine cyclotransfer 98.9 7.5E-07 2.6E-11 74.7 20.9 190 109-308 33-243 (262)
236 1fwx_A Nitrous oxide reductase 98.8 1.2E-06 3.9E-11 81.9 24.0 211 95-308 110-406 (595)
237 2iwa_A Glutamine cyclotransfer 98.8 1.7E-06 5.9E-11 73.2 23.0 212 16-279 8-238 (266)
238 3nol_A Glutamine cyclotransfer 98.8 7.1E-07 2.4E-11 74.9 19.5 196 16-266 30-243 (262)
239 2iwa_A Glutamine cyclotransfer 98.8 9.5E-07 3.2E-11 74.8 19.8 184 118-308 21-225 (266)
240 3hxj_A Pyrrolo-quinoline quino 98.8 8.1E-07 2.8E-11 77.5 20.1 259 27-314 59-320 (330)
241 1kv9_A Type II quinohemoprotei 98.8 1.2E-05 4.2E-10 77.6 29.0 266 39-308 117-520 (668)
242 3nok_A Glutaminyl cyclase; bet 98.8 1.4E-06 4.7E-11 73.2 19.2 189 109-307 45-253 (268)
243 2fp8_A Strictosidine synthase; 98.7 3.1E-05 1E-09 67.6 28.2 237 29-278 20-313 (322)
244 2hz6_A Endoplasmic reticulum t 98.7 3.8E-09 1.3E-13 94.8 1.8 148 128-286 8-157 (369)
245 3mbr_X Glutamine cyclotransfer 98.6 1.6E-05 5.6E-10 66.0 22.2 182 118-308 21-222 (243)
246 3hxj_A Pyrrolo-quinoline quino 98.6 2.3E-06 7.9E-11 74.6 18.0 255 31-314 23-280 (330)
247 1fwx_A Nitrous oxide reductase 98.6 4.5E-06 1.5E-10 78.0 20.5 244 37-281 99-434 (595)
248 2p4o_A Hypothetical protein; p 98.6 5E-05 1.7E-09 65.8 26.0 224 28-308 32-276 (306)
249 4a2l_A BT_4663, two-component 98.6 0.00058 2E-08 67.3 36.5 269 30-315 175-477 (795)
250 2ad6_A Methanol dehydrogenase 98.6 7.4E-05 2.5E-09 70.7 28.7 263 39-307 115-524 (571)
251 3mbr_X Glutamine cyclotransfer 98.6 1.7E-05 5.8E-10 65.9 20.7 196 17-266 9-222 (243)
252 1w6s_A Methanol dehydrogenase 98.6 8.9E-05 3E-09 70.4 28.5 267 33-305 111-531 (599)
253 1flg_A Protein (quinoprotein e 98.5 0.00014 4.7E-09 69.0 29.0 263 39-306 117-545 (582)
254 4a2l_A BT_4663, two-component 98.5 0.00044 1.5E-08 68.1 33.3 270 27-315 262-568 (795)
255 1k3i_A Galactose oxidase precu 98.5 1.6E-05 5.4E-10 76.7 21.4 272 32-309 190-530 (656)
256 2fp8_A Strictosidine synthase; 98.5 5E-05 1.7E-09 66.3 22.1 182 119-309 20-248 (322)
257 1kv9_A Type II quinohemoprotei 98.5 8.3E-05 2.8E-09 71.8 25.2 268 39-315 66-485 (668)
258 3nok_A Glutaminyl cyclase; bet 98.4 2.8E-05 9.7E-10 65.2 17.9 188 21-223 47-254 (268)
259 2xe4_A Oligopeptidase B; hydro 98.4 5.8E-05 2E-09 73.9 22.2 197 115-318 170-398 (751)
260 2ad6_A Methanol dehydrogenase 98.3 0.00095 3.3E-08 63.1 27.4 194 39-243 62-344 (571)
261 3v9f_A Two-component system se 98.2 0.0045 1.5E-07 60.8 32.3 265 28-308 211-513 (781)
262 1npe_A Nidogen, entactin; glyc 98.2 0.0016 5.5E-08 54.8 27.8 219 28-260 36-263 (267)
263 3v64_C Agrin; beta propeller, 98.2 0.0024 8.1E-08 56.4 29.6 258 29-301 35-299 (349)
264 3v65_B Low-density lipoprotein 98.2 0.0031 1.1E-07 56.4 29.0 243 47-302 94-343 (386)
265 3v9f_A Two-component system se 98.1 0.0075 2.6E-07 59.2 33.5 271 26-315 311-608 (781)
266 4hw6_A Hypothetical protein, I 98.1 0.0022 7.4E-08 58.4 25.9 242 30-277 141-432 (433)
267 1w6s_A Methanol dehydrogenase 98.1 0.0057 2E-07 58.0 29.2 195 39-243 62-351 (599)
268 2xe4_A Oligopeptidase B; hydro 98.1 0.00089 3E-08 65.5 24.1 119 25-149 170-305 (751)
269 3qqz_A Putative uncharacterize 98.1 0.0023 7.7E-08 53.7 22.7 203 111-316 20-249 (255)
270 1k3i_A Galactose oxidase precu 98.1 0.00034 1.1E-08 67.4 19.8 245 15-267 229-530 (656)
271 3tc9_A Hypothetical hydrolase; 98.1 0.0027 9.3E-08 57.7 24.8 243 30-277 139-429 (430)
272 3tc9_A Hypothetical hydrolase; 98.0 0.007 2.4E-07 55.0 26.6 212 97-315 159-425 (430)
273 1ijq_A LDL receptor, low-densi 98.0 0.006 2.1E-07 52.9 31.9 228 49-287 10-247 (316)
274 3p5b_L Low density lipoprotein 98.0 0.0079 2.7E-07 54.1 32.4 248 41-300 85-343 (400)
275 3v65_B Low-density lipoprotein 97.9 0.0067 2.3E-07 54.2 24.9 212 97-316 96-314 (386)
276 1flg_A Protein (quinoprotein e 97.9 0.016 5.5E-07 54.8 29.2 197 39-243 68-364 (582)
277 2p4o_A Hypothetical protein; p 97.9 0.0095 3.3E-07 51.2 24.5 191 118-315 32-239 (306)
278 3v64_C Agrin; beta propeller, 97.9 0.012 4E-07 51.8 30.2 212 97-316 53-271 (349)
279 4hw6_A Hypothetical protein, I 97.9 0.0092 3.1E-07 54.3 24.6 213 97-315 162-428 (433)
280 3sov_A LRP-6, low-density lipo 97.8 0.012 4.2E-07 51.0 25.2 202 97-306 13-224 (318)
281 3m0c_C LDL receptor, low-densi 97.7 0.042 1.4E-06 53.8 29.6 229 47-286 402-640 (791)
282 1ijq_A LDL receptor, low-densi 97.7 0.019 6.5E-07 49.7 28.3 211 97-315 10-233 (316)
283 1n7d_A LDL receptor, low-densi 97.7 0.00047 1.6E-08 66.8 14.0 240 48-298 385-634 (699)
284 3qqz_A Putative uncharacterize 97.7 0.019 6.5E-07 48.0 27.9 205 22-276 21-251 (255)
285 3p5b_L Low density lipoprotein 97.5 0.047 1.6E-06 48.9 27.1 203 97-307 92-307 (400)
286 3sov_A LRP-6, low-density lipo 97.5 0.047 1.6E-06 47.3 27.2 242 48-301 12-262 (318)
287 3m0c_C LDL receptor, low-densi 97.4 0.073 2.5E-06 52.1 25.1 213 97-317 404-629 (791)
288 2p9w_A MAL S 1 allergenic prot 97.4 0.028 9.7E-07 48.6 19.1 160 118-281 13-218 (334)
289 3amr_A 3-phytase; beta-propell 97.3 0.078 2.7E-06 46.3 23.0 185 97-286 50-272 (355)
290 3amr_A 3-phytase; beta-propell 97.2 0.096 3.3E-06 45.7 25.6 207 32-244 30-274 (355)
291 3kya_A Putative phosphatase; s 97.1 0.16 5.3E-06 46.8 28.5 219 97-317 162-472 (496)
292 2xbg_A YCF48-like protein; pho 97.1 0.11 3.8E-06 45.0 31.7 258 27-308 35-311 (327)
293 3kya_A Putative phosphatase; s 97.0 0.17 5.9E-06 46.5 21.7 156 119-277 140-340 (496)
294 3ii7_A Kelch-like protein 7; p 96.9 0.17 5.8E-06 43.1 23.2 229 41-279 14-273 (306)
295 2xn4_A Kelch-like protein 2; s 96.9 0.18 6E-06 42.9 22.3 232 39-279 16-277 (302)
296 2vpj_A Kelch-like protein 12; 96.9 0.17 6E-06 42.9 21.8 233 38-279 14-279 (301)
297 4a0p_A LRP6, LRP-6, low-densit 96.8 0.34 1.2E-05 46.1 28.0 212 97-317 15-234 (628)
298 2xzh_A Clathrin heavy chain 1; 96.8 0.21 7.2E-06 43.1 30.4 235 32-280 71-334 (365)
299 1n7d_A LDL receptor, low-densi 96.7 0.009 3.1E-07 57.8 11.0 198 96-300 385-595 (699)
300 1zgk_A Kelch-like ECH-associat 96.5 0.29 9.9E-06 41.7 18.4 232 37-278 23-287 (308)
301 2vpj_A Kelch-like protein 12; 96.4 0.36 1.2E-05 40.9 19.5 184 128-320 62-278 (301)
302 3a9g_A Putative uncharacterize 96.4 0.44 1.5E-05 41.8 23.6 60 249-308 260-330 (354)
303 3s94_A LRP-6, low-density lipo 96.4 0.73 2.5E-05 43.8 31.5 274 28-308 84-410 (619)
304 3s94_A LRP-6, low-density lipo 96.3 0.74 2.5E-05 43.7 28.5 227 48-286 17-251 (619)
305 3sre_A PON1, serum paraoxonase 96.3 0.44 1.5E-05 41.8 18.1 128 177-308 81-239 (355)
306 2ism_A Putative oxidoreductase 96.2 0.54 1.8E-05 41.1 27.8 230 30-266 33-333 (352)
307 3ii7_A Kelch-like protein 7; p 96.2 0.5 1.7E-05 40.1 19.3 202 97-308 24-255 (306)
308 1bpo_A Protein (clathrin); cla 96.2 0.7 2.4E-05 41.5 31.6 237 32-281 70-334 (494)
309 4asc_A Kelch repeat and BTB do 96.2 0.53 1.8E-05 40.2 20.2 229 41-279 7-278 (315)
310 3das_A Putative oxidoreductase 96.1 0.34 1.2E-05 42.4 16.5 34 116-149 30-63 (347)
311 2ism_A Putative oxidoreductase 96.0 0.16 5.5E-06 44.5 14.1 102 205-307 76-220 (352)
312 2g8s_A Glucose/sorbosone dehyd 95.9 0.35 1.2E-05 42.4 15.8 56 250-306 132-214 (353)
313 3a9g_A Putative uncharacterize 95.9 0.45 1.5E-05 41.7 16.4 101 205-307 74-215 (354)
314 1zgk_A Kelch-like ECH-associat 95.8 0.52 1.8E-05 40.1 16.4 145 128-279 70-241 (308)
315 4a0p_A LRP6, LRP-6, low-densit 95.7 1.5 5.2E-05 41.7 30.0 225 47-285 13-244 (628)
316 3pbp_A Nucleoporin NUP82; beta 95.7 1.1 3.8E-05 40.1 19.4 114 205-320 67-212 (452)
317 3sre_A PON1, serum paraoxonase 95.5 1.1 3.8E-05 39.2 22.7 182 120-307 52-284 (355)
318 2xbg_A YCF48-like protein; pho 95.3 1.2 4.3E-05 38.2 26.9 156 114-276 159-320 (327)
319 1cru_A Protein (soluble quinop 95.3 0.78 2.7E-05 41.7 16.1 31 118-148 27-57 (454)
320 2woz_A Kelch repeat and BTB do 94.5 2 6.7E-05 36.6 21.9 229 41-279 18-288 (318)
321 1xi4_A Clathrin heavy chain; a 94.5 2.1 7.1E-05 44.5 17.7 234 34-280 72-333 (1630)
322 3pbp_A Nucleoporin NUP82; beta 94.3 2.8 9.5E-05 37.6 20.6 136 138-274 40-208 (452)
323 1tl2_A L10, protein (tachylect 94.3 1.8 6.1E-05 35.1 15.7 102 205-310 42-155 (236)
324 2p9w_A MAL S 1 allergenic prot 94.0 2.7 9.3E-05 36.3 25.3 198 74-280 17-267 (334)
325 1cru_A Protein (soluble quinop 93.8 1.4 4.9E-05 39.9 14.2 105 204-308 27-162 (454)
326 2xn4_A Kelch-like protein 2; s 93.2 3.3 0.00011 34.8 19.2 145 128-279 61-230 (302)
327 4asc_A Kelch repeat and BTB do 92.7 4.1 0.00014 34.4 20.9 203 97-308 13-251 (315)
328 2xzh_A Clathrin heavy chain 1; 92.5 4.8 0.00016 34.8 28.7 235 47-300 47-312 (365)
329 3ei3_A DNA damage-binding prot 92.5 11 0.00036 38.7 34.2 90 227-318 809-913 (1158)
330 2uvk_A YJHT; unknown function, 92.0 5.5 0.00019 34.3 18.0 57 226-284 286-348 (357)
331 3das_A Putative oxidoreductase 91.3 6.9 0.00024 34.0 21.4 62 206-269 142-224 (347)
332 2g8s_A Glucose/sorbosone dehyd 91.2 7 0.00024 33.9 25.6 61 205-265 272-340 (353)
333 1tl2_A L10, protein (tachylect 91.1 5.3 0.00018 32.4 18.5 150 161-319 44-209 (236)
334 3ei3_A DNA damage-binding prot 90.1 18 0.00063 37.0 35.1 246 50-313 493-760 (1158)
335 3ott_A Two-component system se 89.8 15 0.00051 35.5 20.7 185 118-313 63-255 (758)
336 2uvk_A YJHT; unknown function, 89.7 4.8 0.00016 34.7 12.3 93 214-308 200-324 (357)
337 1bpo_A Protein (clathrin); cla 89.2 12 0.00042 33.7 29.9 242 46-305 45-316 (494)
338 2zwa_A Leucine carboxyl methyl 88.8 17 0.00059 34.8 17.6 183 97-279 412-636 (695)
339 2woz_A Kelch repeat and BTB do 88.6 10 0.00035 32.0 20.9 172 98-279 25-232 (318)
340 2wg3_C Hedgehog-interacting pr 87.3 6.8 0.00023 35.6 11.8 103 206-308 16-157 (463)
341 1xi4_A Clathrin heavy chain; a 86.7 34 0.0012 35.9 18.8 233 47-298 46-309 (1630)
342 3s25_A Hypothetical 7-bladed b 86.5 14 0.00048 31.3 18.6 173 124-317 59-252 (302)
343 2zwa_A Leucine carboxyl methyl 86.1 25 0.00084 33.7 19.3 200 37-238 396-639 (695)
344 3sbq_A Nitrous-oxide reductase 83.1 11 0.00039 35.0 10.9 70 208-278 327-408 (638)
345 2be1_A Serine/threonine-protei 80.8 17 0.00057 31.4 10.9 113 130-244 11-140 (339)
346 4gq2_M Nucleoporin NUP120; bet 80.0 3 0.0001 41.7 6.7 37 29-65 237-273 (950)
347 2be1_A Serine/threonine-protei 79.3 30 0.001 29.8 20.4 115 39-158 10-140 (339)
348 4fhn_B Nucleoporin NUP120; pro 79.3 11 0.00038 38.5 10.7 38 249-286 239-276 (1139)
349 4gq2_M Nucleoporin NUP120; bet 78.4 3.6 0.00012 41.2 6.7 40 118-157 236-275 (950)
350 2wg3_C Hedgehog-interacting pr 77.0 42 0.0014 30.3 14.0 21 249-269 140-160 (463)
351 4fhn_B Nucleoporin NUP120; pro 73.9 3.1 0.00011 42.6 4.9 38 29-66 239-276 (1139)
352 3f7f_A Nucleoporin NUP120; nuc 71.4 6.5 0.00022 37.7 6.1 37 29-67 223-259 (729)
353 3q6k_A 43.2 kDa salivary prote 67.4 65 0.0022 28.3 22.2 169 140-308 124-342 (381)
354 3f7f_A Nucleoporin NUP120; nuc 67.1 9.3 0.00032 36.7 6.1 37 119-157 223-259 (729)
355 3zwu_A Alkaline phosphatase PH 63.0 32 0.0011 32.2 8.9 57 251-307 479-548 (592)
356 4a9v_A PHOX; hydrolase, beta-p 62.8 39 0.0013 31.5 9.2 58 250-307 478-548 (592)
357 3zwu_A Alkaline phosphatase PH 59.2 29 0.001 32.5 7.9 57 208-265 480-548 (592)
358 3s25_A Hypothetical 7-bladed b 47.9 1.2E+02 0.0042 25.3 23.0 181 33-236 58-257 (302)
359 4a9v_A PHOX; hydrolase, beta-p 43.9 82 0.0028 29.4 8.1 59 206-265 478-548 (592)
360 3ott_A Two-component system se 42.3 2.3E+02 0.0079 26.9 31.0 254 27-307 21-296 (758)
361 2jra_A Protein RPA2121; domain 36.4 33 0.0011 21.5 2.9 24 21-44 43-66 (67)
362 3sbq_A Nitrous-oxide reductase 36.3 55 0.0019 30.6 5.6 70 118-187 323-407 (638)
363 2loj_A Putative cytoplasmic pr 34.8 30 0.001 21.5 2.5 23 22-44 40-62 (63)
364 3al9_A Plexin-A2; beta-propell 33.3 2E+02 0.007 26.4 9.1 68 206-273 402-476 (539)
365 4hvt_A Ritya.17583.B, post-pro 29.4 3.8E+02 0.013 25.6 29.3 244 30-277 131-429 (711)
366 1q47_A Semaphorin 3A; beta pro 25.3 2.3E+02 0.0079 25.7 7.9 56 218-273 424-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-46 Score=344.40 Aligned_cols=285 Identities=17% Similarity=0.299 Sum_probs=253.5
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
...+.+|.++|++++|+|++++|+||+.|++|++||+.+++....+.+|...+.+++|++++..+++++ .+++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs------~D~~i 174 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS------ADMTI 174 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE------TTSCC
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe------CCCeE
Confidence 557889999999999999999999999999999999999998888888888899999987766555443 35899
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEc
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAME 177 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 177 (338)
++||+.+++++..+.+|...|.+++|+|++++|+|||.|++|++||++++++...+..+.. ..+.+++++.++++++.
T Consensus 175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254 (410)
T ss_dssp CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999998887776554 45788999999999999
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC--------------------CCEEEEEecCCcEEEEEccCCee
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--------------------GKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--------------------~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
|+.|++||++.... ...+.+|...|.++.|+|+ +.++++++.|+.|++||+.++..
T Consensus 255 D~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 255 DQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp TSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred CCeEEEEECCCCce----eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 99999999876432 2344578889999999996 66899999999999999998876
Q ss_pred EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 238 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 238 ~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
...+ .+|...+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|++|+|+|++++|++|+ +++++|.
T Consensus 331 ~~~~--~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 331 LMTL--VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEE--ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEE--ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 6544 46777899999999999999999999999999999999999999999999999999999999997 5799995
Q ss_pred e
Q 019603 316 P 316 (338)
Q Consensus 316 ~ 316 (338)
.
T Consensus 409 ~ 409 (410)
T 1vyh_C 409 C 409 (410)
T ss_dssp -
T ss_pred C
Confidence 3
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-45 Score=330.14 Aligned_cols=288 Identities=16% Similarity=0.246 Sum_probs=251.2
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
+....+|.+|.++|++++|+|++++|+||+.|++|++||+.+++.+..+..+...+.+++|++++..+++++ .+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~d 118 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG------LD 118 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE------TT
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe------CC
Confidence 455678999999999999999999999999999999999999998888888888888999988777665543 34
Q ss_pred ceeEEEEccCC----eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCC
Q 019603 97 ESLRYLSMYDN----RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGL 170 (338)
Q Consensus 97 ~~i~~~~~~~~----~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~ 170 (338)
+.+++|++.++ .....+.+|.+.|.++.|++++ .+++++.|++|++||++++++...+..+.. ..+.|+|++.
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC
Confidence 89999999764 4567789999999999999876 589999999999999999988777765543 4578999999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
++++++.|+.|++||++.... .....+|...|.+++|+|+++++++++.|+.|++||+..+.....+....+...+
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMC----RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEEeCCCcEEEEECCCCee----EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence 999999999999999876431 2345678889999999999999999999999999999888776655544444578
Q ss_pred eeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 251 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+|+|+|++.+|++|+ ++++||.
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999999999997 5799993
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-45 Score=323.68 Aligned_cols=289 Identities=18% Similarity=0.254 Sum_probs=247.5
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
+....+|.+|.+.|++++|+|++++|++|+.|++|++||++++..+..+..+...+.++.|++++..++.++ .+
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s------~d 76 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS------DD 76 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE------TT
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC------CC
Confidence 566789999999999999999999999999999999999999999888888888899999998877766543 35
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeeeeeecCc--cEEEEcC-CCCEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGR--PTVAFDQ-QGLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~-~~~~~~~~~~--~~~~~~~-~~~~~ 172 (338)
++|++|++.+++.+..+.+|.+.|++++|+|++++|+|||.|++|++||++.+. +...+..+.. ..++|+| ++..+
T Consensus 77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence 899999999999999999999999999999999999999999999999998774 3344544443 4588998 57899
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC--CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
++++.|+.|++||++.... . ..+..++...+..+.|+| ++.++++++.|+.|++||..+++....+ .+|...+
T Consensus 157 ~sgs~D~~v~iwd~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~--~~h~~~v 231 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTP--N-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--EGHMSNV 231 (304)
T ss_dssp EEEETTSEEEEEETTCSSC--S-EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCE
T ss_pred EEEeCCCeEEEEECCCCCc--c-ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee--CCCCCCE
Confidence 9999999999999875432 1 223345667788899987 6789999999999999999988766544 4667789
Q ss_pred eeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc--eEEeecc-eEEEeee
Q 019603 251 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA--MFVAASS-VLSFWIP 316 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s~s~-~~~iw~~ 316 (338)
..++|+|++++|+||+.||+|++||+.+++++..+..|.+.+++++|+|++. ++|+|+. .+.+|..
T Consensus 232 ~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999875 5777763 4666643
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.3e-45 Score=326.87 Aligned_cols=288 Identities=14% Similarity=0.229 Sum_probs=248.8
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
....+|.+|.+.|++++|+|++++|+|||.|++|++||..+++....+..+...+..++|++++..+++++ .++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~------~d~ 128 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG------LDN 128 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES------TTS
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee------CCC
Confidence 45678899999999999999999999999999999999999988887777777888899988877666543 348
Q ss_pred eeEEEEccCC------eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcC--
Q 019603 98 SLRYLSMYDN------RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQ-- 167 (338)
Q Consensus 98 ~i~~~~~~~~------~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~-- 167 (338)
.+++|++... .....+.+|.+.|.++.|+|+++.|++||.|++|++||++++++...+..+... .+.+.|
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 8999998542 235567789999999999999999999999999999999999988887766544 356666
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
++..+++++.|+.|++||+++... .....+|...|.++.|+|++.++++++.|+.|++||+..+.....+....+.
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~ 284 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQC----VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII 284 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc
Confidence 578999999999999999986432 2345678899999999999999999999999999999888766666554444
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
..+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++|+|+|++++|++|+ ++++||.
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 5678999999999999999999999999999999999999999999999999999999997 5799993
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.2e-45 Score=323.34 Aligned_cols=285 Identities=18% Similarity=0.253 Sum_probs=244.9
Q ss_pred eeeccCCcceeEEEeecC----CCEEEEeeCCCcEEEEEcCCCee--EeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 21 AIFSDFGGKINSLDFHRK----DDLLVTASDDDSVRLYDIVSAKL--IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~----~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
..+.+|.+.|++++|+|+ +++|+|||.|++|++||+.+++. ...+.+|...+.++.+++....++.+ +
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~------s 99 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASS------S 99 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEE------E
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEE------e
Confidence 556799999999999975 66999999999999999987764 33456777788888887766555443 2
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVF 172 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (338)
.++++++||+.+++.+..+.+|...+.+++|+|++++|++|+.|++|++||++.++....+..+.. ..++|+|++.++
T Consensus 100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 358999999999999999999999999999999999999999999999999998887666665543 357899999999
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
++++.|+.|++||+++.. ....+.+|...|.+++|+|+++++++++.|+.|++||...++... .+.+|...+.+
T Consensus 180 asg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~h~~~v~~ 253 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG--TLSGHASWVLN 253 (321)
T ss_dssp EEEETTSCEEEEETTTTE----EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE--EECCCSSCEEE
T ss_pred EEEcCCCeEEEEECCCCc----EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE--EEcCCCCceEE
Confidence 999999999999987642 123456788899999999999999999999999999998876654 44567788999
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
++|+|++++|++|+.|++|++||+.+++++..+.+|.+.|++++|+|++..|++++ +.+++|..|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999987 579999764
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-43 Score=313.61 Aligned_cols=293 Identities=23% Similarity=0.418 Sum_probs=251.7
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
.+.+..++.+|.++|++++|+|++++|++|+.|+.|++|++.+++....+..+...+..++|++++..++.++ .
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------~ 85 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS------D 85 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------T
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC------C
Confidence 4677788999999999999999999999999999999999999998888888888899999988776666543 3
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFA 173 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 173 (338)
++.+++|++.+++.+..+.+|...|.++.|+|++++|++|+.|++|++||++++++...+..+.. ..+.|+|++..++
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 48999999999999999999999999999999999999999999999999999988777766544 3578999999999
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeE
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 253 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 253 (338)
+++.|+.|++||++.... .......+...+..+.|+|+++++++++.|+.|++||+.+++....+..+.........
T Consensus 166 ~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp EEETTSCEEEEETTTCCE---EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred EEeCCCcEEEEECCCCce---eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence 999999999999876431 12223345667999999999999999999999999999988877666554433333334
Q ss_pred EE-CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec----ceEEEeeeC
Q 019603 254 TF-TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPN 317 (338)
Q Consensus 254 ~f-s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s----~~~~iw~~~ 317 (338)
.| .+++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++ +++++|..+
T Consensus 243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 44 46789999999999999999999999999999999999999999999999874 579999754
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-44 Score=327.63 Aligned_cols=292 Identities=18% Similarity=0.315 Sum_probs=245.8
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
+....+|.+|.++|++++|+|++++|+|||.|++|+|||+.+++.+..+..+...+..++|++++..++++ +.+
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~------~~d 129 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG------GLD 129 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC------CSS
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe------eCC
Confidence 33456789999999999999999999999999999999999999988888888889999998887766543 345
Q ss_pred ceeEEEEccCCe-------EEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeeee-----ecCc--c
Q 019603 97 ESLRYLSMYDNR-------ILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILR-----LRGR--P 161 (338)
Q Consensus 97 ~~i~~~~~~~~~-------~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~-----~~~~--~ 161 (338)
+.+++|++.+.. ....+.+|.+.|.++.|.|++ ..|+|||.|++|++||++++++...+. .+.. .
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 899999986432 345678999999999999975 579999999999999999998876652 1222 3
Q ss_pred EEEEcC-CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEE
Q 019603 162 TVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 240 (338)
Q Consensus 162 ~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~ 240 (338)
.+.+++ ++.++++++.|+.|++||++.... . .....+|...|.++.|+|+++++++++.|+.|++||+.+++....
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSR-A--VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCC-C--CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCc-c--eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 456765 788999999999999999874322 1 234567899999999999999999999999999999999987766
Q ss_pred eeeCCC-----CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe----eCCCCceEEEEEcCCCceEEeec--c
Q 019603 241 FSLEPS-----PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW----NGNIGVVACLKWAPRRAMFVAAS--S 309 (338)
Q Consensus 241 ~~~~~~-----~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~----~~h~~~v~~l~~~p~~~~l~s~s--~ 309 (338)
+..+.. ...+++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++|+|+|++.+|++|+ +
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence 654322 234789999999999999999999999999999888877 68999999999999999999997 5
Q ss_pred eEEEeeeC
Q 019603 310 VLSFWIPN 317 (338)
Q Consensus 310 ~~~iw~~~ 317 (338)
++++|...
T Consensus 367 ~i~iW~~~ 374 (380)
T 3iz6_a 367 NLKIWAFS 374 (380)
T ss_dssp CEEEEECC
T ss_pred CEEEEecC
Confidence 79999765
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=310.49 Aligned_cols=296 Identities=15% Similarity=0.280 Sum_probs=236.5
Q ss_pred ccccceeeccCCc-ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE---EeecccCeeeEEEeecCCeeEEecCcc
Q 019603 16 SMAMAAIFSDFGG-KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT---TYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 16 ~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
.+.++..+.+|.+ .|++++|+|+|++|+||+.|++|+|||+.++..... ..+|...+.+++|++++..++.++
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s--- 80 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS--- 80 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE---
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE---
Confidence 5677889999987 999999999999999999999999999988764322 235666788999988777666543
Q ss_pred CCCCCceeEEEEccCC--eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc---eeeeeeecC--ccEEE
Q 019603 92 LDSTGESLRYLSMYDN--RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRG--RPTVA 164 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~--~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~---~~~~~~~~~--~~~~~ 164 (338)
.++++++|++..+ +++..+.+|.+.|.+++|+|++++|+||+.|++|++||++.+. +...+..+. ...+.
T Consensus 81 ---~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 81 ---FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp ---TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred ---CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 3488999999776 4678899999999999999999999999999999999998764 333343333 34588
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe--------
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-------- 236 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~-------- 236 (338)
|+|++.++++++.|+.|++||.+.... .....+.+|...|.+++|+|+++++++++.|+.|++|+.....
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 999999999999999999999765321 1123456889999999999999999999999999999864221
Q ss_pred -----eEEEeeeCC-CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC----e-----EeEeeCCCCceEEEEEcCCC
Q 019603 237 -----KRCGFSLEP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN----E-----VACWNGNIGVVACLKWAPRR 301 (338)
Q Consensus 237 -----~~~~~~~~~-~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~----~-----~~~~~~h~~~v~~l~~~p~~ 301 (338)
..+.....+ |...+.+++|+|++.+|++++.|+.|++|+..... . ...+.+|.+.|++|+|+|++
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence 111222232 66789999999999999999999999999987542 1 12235899999999999998
Q ss_pred c-eEEeec--ceEEEeeeCCC
Q 019603 302 A-MFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 302 ~-~l~s~s--~~~~iw~~~~~ 319 (338)
. +||+|+ +++++|.....
T Consensus 316 ~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 316 PGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TTEEEEEETTSCEEEEEECC-
T ss_pred ceEEEEcCCCCcEEEEEecCC
Confidence 5 899986 67999976543
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.3e-42 Score=303.64 Aligned_cols=289 Identities=15% Similarity=0.263 Sum_probs=238.9
Q ss_pred HhccccceeeccCCcceeEEEeecCC-CEEEEeeCCCcEEEEEcCC-----CeeEeEEeecccCeeeEEEeecCCeeEEe
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVS-----AKLIKTTYHKKHGADCVCFTHHPSSVICS 87 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~D~~i~iWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
.+.+.+..+|.+|.+.|++++|+|++ ++|+|||.|++|++||+.. +..+..+.+|...+..++|++++..++.+
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34567788999999999999999965 7999999999999999863 23456677888889999998887776654
Q ss_pred cCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEE
Q 019603 88 TKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAF 165 (338)
Q Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~ 165 (338)
+ .++++++||+.+++.+..+.+|...|.+++|+|++++|+||+.|++|++||++. ++...+..+.. ..+.+
T Consensus 84 s------~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~ 156 (319)
T 3frx_A 84 S------WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV 156 (319)
T ss_dssp E------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEE
T ss_pred e------CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEE
Confidence 3 358999999999999999999999999999999999999999999999999964 44444444433 34666
Q ss_pred cC------CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEE
Q 019603 166 DQ------QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 239 (338)
Q Consensus 166 ~~------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~ 239 (338)
.| ++..+++++.|+.|++||++.... .....+|...|.++.|+|+++++++++.|+.|++||+.+++...
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~ 232 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTTTEE----EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCcchh----heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 66 455899999999999999875321 23345788999999999999999999999999999999887766
Q ss_pred EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee--------CCCCceEEEEEcCCCceEEeec--c
Q 019603 240 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------GNIGVVACLKWAPRRAMFVAAS--S 309 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------~h~~~v~~l~~~p~~~~l~s~s--~ 309 (338)
.+.. ...+.+++|+|++.+|++++.+ .+++|++..+..+..+. .|...+.+++|+|++++|++|+ +
T Consensus 233 ~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 233 TLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp EEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred EecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 5543 3578999999999999988755 59999999877766654 3467899999999999999997 5
Q ss_pred eEEEeeeC
Q 019603 310 VLSFWIPN 317 (338)
Q Consensus 310 ~~~iw~~~ 317 (338)
.+++|...
T Consensus 309 ~i~vWd~~ 316 (319)
T 3frx_A 309 VIRVWQVM 316 (319)
T ss_dssp CEEEEEEE
T ss_pred eEEEEEEe
Confidence 79999764
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.2e-43 Score=314.21 Aligned_cols=285 Identities=15% Similarity=0.193 Sum_probs=220.8
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeC------CCcEEEEEcCCCeeE----eEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASD------DDSVRLYDIVSAKLI----KTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~------D~~i~iWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
....|.+.|++++|+|||++|+|||. |++|++|+..++... .....+..++.+++|+++.. ++.+
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~---- 111 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVA---- 111 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEE----
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEE----
Confidence 34579999999999999999999997 788999998776532 22345556788889887643 3332
Q ss_pred CCCCCceeEEEEccCCeEEE----eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEE
Q 019603 92 LDSTGESLRYLSMYDNRILR----YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAF 165 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~----~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~ 165 (338)
+.+++|++||+.+++... ...+|.+.|++++|+|++++|+||+.|++|++||++++++...+..+.. ..++|
T Consensus 112 --s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 112 --SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp --ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred --ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 234789999998876543 3458999999999999999999999999999999999988877766554 35788
Q ss_pred cCCCC-EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 166 DQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 166 ~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
++++. ++++++.|+.|++||++..... .......+...+.++.|+|++ .++++++.|+.|++||+.+++.... +
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--~ 265 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--S 265 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--E
T ss_pred ccCCCceeeeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--E
Confidence 88875 7889999999999998865431 122233456779999999985 5778888999999999988876554 4
Q ss_pred CCCCCCCeeEEECCCC-CEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcC-CCceEEeec--ceEEEeeeCC
Q 019603 244 EPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s--~~~~iw~~~~ 318 (338)
..+...+++++|+|++ ++|+||+.||+|+|||+++++++..+ +|.+.|++|+|+| ++.+|++++ +++++|..+.
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 5666789999999997 57999999999999999998877554 8999999999999 788999987 6899997654
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.7e-42 Score=311.08 Aligned_cols=285 Identities=21% Similarity=0.370 Sum_probs=235.6
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc------------------CeeeEEEeecCCeeEE
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH------------------GADCVCFTHHPSSVIC 86 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 86 (338)
+|.+.|++++|+|+|++|++|+ |+++++|++.+++.+..+..+.. .+.+++|++++..++.
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 7999999999999999999976 78999999999987766543321 2667888877766654
Q ss_pred ecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEE
Q 019603 87 STKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAF 165 (338)
Q Consensus 87 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~ 165 (338)
++ .++.|++||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||++++++...+.... ...+.+
T Consensus 141 ~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~ 214 (393)
T 1erj_A 141 GA------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 214 (393)
T ss_dssp EE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred Ec------CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEE
Confidence 43 34899999999999999999999999999999999999999999999999999998876665433 345788
Q ss_pred cC-CCCEEEEEEcCCeEEEEeCCCCCCCCCeeE-----EecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee--
Q 019603 166 DQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTF-----LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-- 237 (338)
Q Consensus 166 ~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~-- 237 (338)
+| ++.++++++.|+.|++||.+.... ...+ ...+|...|.++.|+|+++++++++.|+.|++||+.....
T Consensus 215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 215 SPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 98 899999999999999999876421 1111 1146788999999999999999999999999999865422
Q ss_pred --------EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcC------CCce
Q 019603 238 --------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP------RRAM 303 (338)
Q Consensus 238 --------~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p------~~~~ 303 (338)
.+.....+|...+.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|.+++|+| ++.+
T Consensus 293 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp --------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred cccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCE
Confidence 12234456777899999999999999999999999999999999999999999999999986 6789
Q ss_pred EEeec--ceEEEeeeCC
Q 019603 304 FVAAS--SVLSFWIPNP 318 (338)
Q Consensus 304 l~s~s--~~~~iw~~~~ 318 (338)
||+|+ ++++||....
T Consensus 373 l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 373 FATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEETTSEEEEEEEEE
T ss_pred EEEECCCCcEEECcccc
Confidence 99987 5799997653
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-42 Score=332.43 Aligned_cols=290 Identities=14% Similarity=0.264 Sum_probs=234.1
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEe-------ecccCeeeEEEeecCCeeEEecC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTY-------HKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
++....|.+|.+.|++++|+|+|++|+||+.|++|++||+.+++++..+. .|...+..++|++++..++.++
T Consensus 180 ~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s- 258 (611)
T 1nr0_A 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS- 258 (611)
T ss_dssp BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-
T ss_pred CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe-
Confidence 45567889999999999999999999999999999999999998877663 5667788899988777666543
Q ss_pred ccCCCCCceeEEEEccCCeEE-------------------------------------------EeecCCccceEEEEEc
Q 019603 90 YNLDSTGESLRYLSMYDNRIL-------------------------------------------RYFKGHKERVISLCMS 126 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~-------------------------------------------~~~~~H~~~V~~l~~~ 126 (338)
.++++++||+.+++++ ..+.+|.+.|++++|+
T Consensus 259 -----~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s 333 (611)
T 1nr0_A 259 -----ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS 333 (611)
T ss_dssp -----TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred -----CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence 3478888888766543 3456899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCcceeeeee--------------------------------------------------
Q 019603 127 PVNDSFMSGSLDHSVRIWDLRVNACQGILR-------------------------------------------------- 156 (338)
Q Consensus 127 ~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~-------------------------------------------------- 156 (338)
|++++|+||+.|++|++||++++++...+.
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence 999999999999999999987664422110
Q ss_pred -------e---------------------------cCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC
Q 019603 157 -------L---------------------------RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 202 (338)
Q Consensus 157 -------~---------------------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 202 (338)
. .....++|+|+|.++++|+.|+.|++||+.... .......+|
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~---~~~~~~~~h 490 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS---VSEVKTIVH 490 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE---EEEEEEEEC
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc---eeeeeccCC
Confidence 0 001246789999999999999999999986421 111112467
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEEccC-CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC-
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN- 280 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~- 280 (338)
...|.+++|+|+++++++++.|+.|++|+..+ ++.........|...|.+++|+|+|++|+||+.|++|++||+.++.
T Consensus 491 ~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 491 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 88999999999999999999999999999876 4432211123477889999999999999999999999999998765
Q ss_pred eE-eEeeCC-CCceEEEEEcCCCceEEeec--ceEEEeee
Q 019603 281 EV-ACWNGN-IGVVACLKWAPRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 281 ~~-~~~~~h-~~~v~~l~~~p~~~~l~s~s--~~~~iw~~ 316 (338)
.+ ..+.+| .+.|++++|+|+++ |++++ +++++|.+
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 33 577899 89999999999998 88886 57999975
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=311.15 Aligned_cols=283 Identities=14% Similarity=0.186 Sum_probs=218.8
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC-----------CeeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS-----------AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
...|.+.|.+++|+|||++|++++ |+++|+||... .........+..++.+++|+++. .++.+
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~---- 99 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVA---- 99 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEE----
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEE----
Confidence 346888999999999999999888 77888887321 00111112233467888887653 34433
Q ss_pred CCCCCceeEEEEccCCeEEE----eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEE
Q 019603 92 LDSTGESLRYLSMYDNRILR----YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAF 165 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~----~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~ 165 (338)
+.+++|++||+.+++... .+.+|.+.|++++|+|++++|+||+.|++|++||+++++++..+..+.. ..+.|
T Consensus 100 --s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 100 --SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp --ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred --ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEe
Confidence 235899999999876543 3458999999999999999999999999999999999998888776554 35788
Q ss_pred cCCCC-EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC-CCEEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 166 DQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 166 ~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
++++. ++++++.|+.|++||++.... ...+....+...+.++.|+|+ ++++++++.|+.|++||..+++....+
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-- 253 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-- 253 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--
T ss_pred cCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--
Confidence 99874 789999999999999986542 212222344567899999996 457788899999999999888766544
Q ss_pred CCCCCCCeeEEECCCC-CEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEeec--ceEEEeeeCC
Q 019603 244 EPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s--~~~~iw~~~~ 318 (338)
.+|...+++++|+|++ ++|+||+.|++|+|||+.+++++ .+.+|.+.|++|+|+|++. +|++++ ++|++|.++.
T Consensus 254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 4667789999999998 58999999999999999987654 6789999999999999986 566775 6899997653
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-41 Score=326.94 Aligned_cols=293 Identities=17% Similarity=0.256 Sum_probs=239.3
Q ss_pred cceeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 19 MAAIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
....+.+|.+.|++++|+|++. .|+||+.|++|++||..+++++..+..|...+.+++|++++..++.++ .++
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s------~D~ 212 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG------GDG 212 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTS
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE------CCC
Confidence 4567889999999999999987 599999999999999999998888888888899999998877665443 358
Q ss_pred eeEEEEccCCeEEEeec-------CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee-------------
Q 019603 98 SLRYLSMYDNRILRYFK-------GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL------------- 157 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~-------~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~------------- 157 (338)
++++|++.+++.+..+. +|.+.|++++|+|++++|+|||.|++|++||++++++...+..
T Consensus 213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 99999999999888884 8999999999999999999999999999999988776544321
Q ss_pred ------------------------------cC--ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCC---------Cee
Q 019603 158 ------------------------------RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP---------FDT 196 (338)
Q Consensus 158 ------------------------------~~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---------~~~ 196 (338)
+. ...++|+|+|..+++++.|+.|++||+++..... +..
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~ 372 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 372 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEE
Confidence 11 1347899999999999999999999976432100 000
Q ss_pred --------------------------------------------EEe-------------------------cCCCCceE
Q 019603 197 --------------------------------------------FLV-------------------------GGDTAEVC 207 (338)
Q Consensus 197 --------------------------------------------~~~-------------------------~~~~~~i~ 207 (338)
... ..+...+.
T Consensus 373 ~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 452 (611)
T 1nr0_A 373 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSS 452 (611)
T ss_dssp EEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEE
T ss_pred EEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCce
Confidence 000 00224578
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC-CCeEeE--
Q 019603 208 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVAC-- 284 (338)
Q Consensus 208 ~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~-~~~~~~-- 284 (338)
+++|+|+++++++++.|+.|++|+..++....... ..|...+++++|+|+|++|++++.|++|++|++.+ ++....
T Consensus 453 ~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~ 531 (611)
T 1nr0_A 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS 531 (611)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred EEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence 89999999999999999999999988765433223 56778899999999999999999999999999987 555443
Q ss_pred eeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 285 WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 285 ~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
+.+|.+.|++++|+|++++||+++ .++++|....
T Consensus 532 ~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred eeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 345999999999999999999997 5799998764
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.7e-41 Score=300.36 Aligned_cols=288 Identities=16% Similarity=0.251 Sum_probs=230.2
Q ss_pred hccccceeeccCCcceeEEEe-----ec-CCCEEEEeeCCCcEEEEEcCCC-------eeEeEEeecccCeeeEEEeecC
Q 019603 15 RSMAMAAIFSDFGGKINSLDF-----HR-KDDLLVTASDDDSVRLYDIVSA-------KLIKTTYHKKHGADCVCFTHHP 81 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~-----s~-~~~~l~s~s~D~~i~iWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 81 (338)
..+.+..+|.+|.+.|++++| ++ ++++|+|||.|++|++||+.++ .....+.+|...+.+++|++++
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 345677889999999999999 76 8999999999999999999753 3455667788889999998877
Q ss_pred CeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee--ec-
Q 019603 82 SSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LR- 158 (338)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~- 158 (338)
..++.++ .++++++||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||++......... .+
T Consensus 89 ~~l~s~s------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 162 (343)
T 2xzm_R 89 CFAISSS------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS 162 (343)
T ss_dssp TEEEEEE------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCS
T ss_pred CEEEEEc------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCC
Confidence 6665443 35899999999999999999999999999999999999999999999999997432221111 11
Q ss_pred -CccEEEEcCCC----------CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcE
Q 019603 159 -GRPTVAFDQQG----------LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 227 (338)
Q Consensus 159 -~~~~~~~~~~~----------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i 227 (338)
....+.|+|++ .++++++.|+.|++||.+. .......+|...|.++.|+|+++++++++.|+.|
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v 237 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence 12457788876 7899999999999999432 1123445788899999999999999999999999
Q ss_pred EEEEccCC-eeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEe--Eee-----------CCCCceE
Q 019603 228 YVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA--CWN-----------GNIGVVA 293 (338)
Q Consensus 228 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~--~~~-----------~h~~~v~ 293 (338)
++||+... .....+. +...+.+++|+|++++|+++ .|+.|++||+.+++... .+. +|.+.|+
T Consensus 238 ~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 313 (343)
T 2xzm_R 238 LIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCT 313 (343)
T ss_dssp EEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEE
T ss_pred EEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceE
Confidence 99998433 2222221 23458999999999988654 68889999998766543 443 7888999
Q ss_pred EEEEcCCCceEEeec--ceEEEeeeC
Q 019603 294 CLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 294 ~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+++|+|++++|++|+ +.+++|...
T Consensus 314 ~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 314 SLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred EEEECCCCCeEEEecCCceEEEEEEE
Confidence 999999999999987 579999754
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-41 Score=297.70 Aligned_cols=292 Identities=17% Similarity=0.271 Sum_probs=222.7
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC--eeEeEE-ee-cccCeeeEEEeecCCeeEEecCc
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA--KLIKTT-YH-KKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
.+++++..|.+|+++|++++|+|+ +|+||+.|++|++||+..+ +.+..+ .. |...+.+++|++++..++.++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-- 77 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-- 77 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE--
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe--
Confidence 356778899999999999999987 9999999999999999875 344444 22 666788899988776655443
Q ss_pred cCCCCCceeEEEEcc-------CCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc----ceeeeeeecC
Q 019603 91 NLDSTGESLRYLSMY-------DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----ACQGILRLRG 159 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~-------~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~----~~~~~~~~~~ 159 (338)
.++++++|++. ..+.+..+.+|.+.|++++|+|++++|+|||.|++|++||++.. ++...+..+.
T Consensus 78 ----~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~ 153 (330)
T 2hes_X 78 ----FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS 153 (330)
T ss_dssp ----TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred ----CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence 34899999984 34567888999999999999999999999999999999999532 3444555444
Q ss_pred c--cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC--CCEEEEEecCCcEEEEEccCC
Q 019603 160 R--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 160 ~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--~~~i~~~~~d~~i~i~~~~~~ 235 (338)
. ..+.|+|++.++++++.|+.|++||.+..... ....+.+|...|.++.|+|+ +.++++++.|+.|++|+...+
T Consensus 154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWE--CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE--EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCee--EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 3 45889999999999999999999997642111 12345688999999999998 678999999999999997643
Q ss_pred e------eEEEeeeCC-CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC--eEeE-eeCCCC-ceEEEEEcC--CCc
Q 019603 236 E------KRCGFSLEP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN--EVAC-WNGNIG-VVACLKWAP--RRA 302 (338)
Q Consensus 236 ~------~~~~~~~~~-~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~--~~~~-~~~h~~-~v~~l~~~p--~~~ 302 (338)
. ......+.. |...+.+++|++++ +|++++.||.|++||..+++ .... +.+|.. .|++++|+| +++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred CccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce
Confidence 1 122223333 67789999999765 89999999999999998763 3333 367887 899999999 788
Q ss_pred eEEeec--ceEEEeeeC
Q 019603 303 MFVAAS--SVLSFWIPN 317 (338)
Q Consensus 303 ~l~s~s--~~~~iw~~~ 317 (338)
+||+|+ ++++||...
T Consensus 311 ~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 311 ILATGGDDGIVNFWSLE 327 (330)
T ss_dssp CEEEEETTSEEEEEEC-
T ss_pred EEEEecCCCcEEEEEec
Confidence 999987 679999754
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-39 Score=286.81 Aligned_cols=294 Identities=12% Similarity=0.196 Sum_probs=251.9
Q ss_pred HHHhccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
....+......|.+|.+.|++++|+|++++|++|+.|+.|++||+.+++.+..+..+...+.+++|++++..++.++
T Consensus 17 ~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--- 93 (369)
T 3zwl_B 17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS--- 93 (369)
T ss_dssp CSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---
T ss_pred EEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe---
Confidence 44556667788999999999999999999999999999999999999999888888888899999988776665443
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC-----CeEEEEECCCcceeee-----------e
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD-----HSVRIWDLRVNACQGI-----------L 155 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D-----~~I~iWd~~~~~~~~~-----------~ 155 (338)
.++.+++|++.+++.+..+. |...|.++.|+|+++++++++.+ +.|++||++.+..... +
T Consensus 94 ---~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 94 ---ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp ---TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred ---CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 34899999999999988888 99999999999999999999999 9999999876543211 1
Q ss_pred eec----CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEE
Q 019603 156 RLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 231 (338)
Q Consensus 156 ~~~----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~ 231 (338)
..+ ....+.|+|++..+++++.||.|++||++... ........+...|.++.|+|+++++++++.|+.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 111 23457899999999999999999999987521 11233456788999999999999999999999999999
Q ss_pred ccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC--------------cEEEEECCCCCeEeEeeCCCCceEEEEE
Q 019603 232 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG--------------TLHAWNINTRNEVACWNGNIGVVACLKW 297 (338)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg--------------~i~vWd~~~~~~~~~~~~h~~~v~~l~~ 297 (338)
+.+++....+. +...+..++|+|+++++++++.++ .+++||+.+++.+..+.+|.+.|++++|
T Consensus 247 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 323 (369)
T 3zwl_B 247 VSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI 323 (369)
T ss_dssp TTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE
Confidence 99888776665 446788999999999999999998 8999999999999999999999999999
Q ss_pred cCCCceEEeec--ceEEEeeeCC
Q 019603 298 APRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 298 ~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
+|++++|++++ +.+++|....
T Consensus 324 s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 324 SPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEEECH
T ss_pred CCCCCEEEEEcCCCeEEEEECcc
Confidence 99999999997 5799998763
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.6e-39 Score=305.16 Aligned_cols=280 Identities=19% Similarity=0.359 Sum_probs=237.1
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.....+.+|.+.|++++|+|++++|++++.|++|++||+... .+..+..+...+.++++++++..++.+. .++
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~dg 366 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASAS------DDK 366 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEE------TTS
T ss_pred cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEe------CCC
Confidence 345678899999999999999999999999999999998754 4455666777888888888777665543 347
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVA 175 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 175 (338)
.+++|+. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++....+..+... .++|+|++.+++++
T Consensus 367 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 444 (577)
T 2ymu_A 367 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASA 444 (577)
T ss_dssp EEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEE
Confidence 8999995 56788889999999999999999999999999999999996 45555556555443 47899999999999
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
+.|+.+++||... .. ...+.+|...|.+++|+|+++++++++.|+.|++|+. +++.... +.+|...+++++|
T Consensus 445 ~~d~~v~~w~~~~----~~-~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~--~~~h~~~v~~l~~ 516 (577)
T 2ymu_A 445 SDDKTVKLWNRNG----QL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT--LTGHSSSVRGVAF 516 (577)
T ss_dssp ETTSEEEEEETTS----CE-EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE--EECCSSCEEEEEE
T ss_pred cCCCEEEEEECCC----CE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE--EeCCCCCEEEEEE
Confidence 9999999999532 11 2334578899999999999999999999999999995 5555544 4467778999999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
+|+|++|++++.||.|++||+ +++++..+.+|.+.|++|+|+||+++|++++ +++++|.
T Consensus 517 s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 517 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999996 6788999999999999999999999999987 5799993
No 19
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.1e-39 Score=312.22 Aligned_cols=292 Identities=15% Similarity=0.262 Sum_probs=236.9
Q ss_pred HHHhccccceeeccCCcceeEEEeecCC-CEEEEeeCCCcEEEEEcCCC-----eeEeEEeecccCeeeEEEeecCCeeE
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSA-----KLIKTTYHKKHGADCVCFTHHPSSVI 85 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~D~~i~iWd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (338)
.....+.+...+.+|.+.|++++|+|++ ++|+|||.|++|++||+.+. .....+.+|...+.+++|++++..++
T Consensus 367 ~~~~~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 367 NAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL 446 (694)
T ss_dssp HHHCSSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred hhhcccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEE
Confidence 3344456667899999999999999875 79999999999999999753 34556777888899999988877666
Q ss_pred EecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee---ec--Cc
Q 019603 86 CSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR---LR--GR 160 (338)
Q Consensus 86 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~---~~--~~ 160 (338)
+++ .+++|++||+.+++....+.+|.+.|++++|+|++++|+|||.|++|++||+.......... .+ ..
T Consensus 447 sgs------~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 447 SGS------WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEE------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEe------CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 543 35899999999999999999999999999999999999999999999999986543322211 11 13
Q ss_pred cEEEEcCCC--CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE
Q 019603 161 PTVAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 238 (338)
Q Consensus 161 ~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~ 238 (338)
.++.|+|++ ..+++++.|+.|++||++.... ...+.+|...|.+++|+|+++++++++.|+.|++||+.+++..
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 468899986 5899999999999999876431 3345688999999999999999999999999999999988765
Q ss_pred EEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCC-------------------CceEEEEEcC
Q 019603 239 CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-------------------GVVACLKWAP 299 (338)
Q Consensus 239 ~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~-------------------~~v~~l~~~p 299 (338)
..+. +...+.+++|+|++.+|++++ |+.|+|||+.+++.+..+..+. -.|++|+|+|
T Consensus 597 ~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 597 YSLE---ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp ECCB---CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred EEec---CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 4332 235688999999999887765 5669999999998887775332 2478999999
Q ss_pred CCceEEeec--ceEEEeeeC
Q 019603 300 RRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 300 ~~~~l~s~s--~~~~iw~~~ 317 (338)
++++|++|+ +.++||.+.
T Consensus 673 dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 673 DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEEcCCCeEEEEecc
Confidence 999999997 579999653
No 20
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.7e-39 Score=290.65 Aligned_cols=288 Identities=14% Similarity=0.214 Sum_probs=240.5
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe------eEeEEeecccCeeeEEEeec----C---Ce
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK------LIKTTYHKKHGADCVCFTHH----P---SS 83 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~----~---~~ 83 (338)
+.....+.+|.+.|++++|+| ++|++|+.|++|++||+.+++ .+..+..+...+.+++|+++ + ..
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345667889999999999998 899999999999999999887 67777788888999999887 5 55
Q ss_pred eEEecCccCCCCCceeEEEEccCCeE-----EEeecCC-----ccceEEEEEc----CCCCE-EEEEECCCeEEEEECCC
Q 019603 84 VICSTKYNLDSTGESLRYLSMYDNRI-----LRYFKGH-----KERVISLCMS----PVNDS-FMSGSLDHSVRIWDLRV 148 (338)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~H-----~~~V~~l~~~----~~~~~-l~Sgs~D~~I~iWd~~~ 148 (338)
+++++ .++.+++|++.+++. ...+.+| ...|.+++|+ |++++ |++|+.|+.|++||++.
T Consensus 84 l~s~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 84 VATTS------FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEE------TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred EEEEc------CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 55432 248899999998876 8888999 5999999999 99999 99999999999999988
Q ss_pred ------cceee-----eeee---------cCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC---C---
Q 019603 149 ------NACQG-----ILRL---------RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---D--- 202 (338)
Q Consensus 149 ------~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~--- 202 (338)
+++.. .+.. .....+.|+|++ .+++++.|+.|++||++... ....+.. |
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----PLYNFESQHSMINN 232 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----EEEEEECCC---CC
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc----eeEEEecccccccc
Confidence 66554 4432 223568999999 99999999999999987632 1223345 6
Q ss_pred CCceEEEEEcCCCCEEEEEecC---CcEEEEEccCCeeEEEeeeCC-----------CCCCCeeEEECCCCCEEEEEcCC
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEP-----------SPNTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d---~~i~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~fs~~~~~l~sgs~D 268 (338)
...+.++.|+|+++++++++.+ +.|++||..+++....+.... |...+.+++|+|++++|++++.|
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 7889999999999999999999 999999998887766554311 66789999999999999999999
Q ss_pred CcEEEEECCCCCeEeEee------CC---------------CCceEEEEEcCCC----------ceEEeec--ceEEEee
Q 019603 269 GTLHAWNINTRNEVACWN------GN---------------IGVVACLKWAPRR----------AMFVAAS--SVLSFWI 315 (338)
Q Consensus 269 g~i~vWd~~~~~~~~~~~------~h---------------~~~v~~l~~~p~~----------~~l~s~s--~~~~iw~ 315 (338)
|.|++||+.+++.+..+. +| .+.|++++|+|++ .+|++++ +.+++|.
T Consensus 313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999999999999999 88 9999999999998 7888886 5799997
Q ss_pred eC
Q 019603 316 PN 317 (338)
Q Consensus 316 ~~ 317 (338)
..
T Consensus 393 ~~ 394 (397)
T 1sq9_A 393 EA 394 (397)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 21
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-38 Score=288.95 Aligned_cols=294 Identities=15% Similarity=0.187 Sum_probs=232.3
Q ss_pred HHhccccceeeccCCcceeEEEeecCC-CEEEEeeCCCcEEEEEcCCCeeEeEEe--ecccCeeeEEEee-cCCeeEEec
Q 019603 13 TVRSMAMAAIFSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTY--HKKHGADCVCFTH-HPSSVICST 88 (338)
Q Consensus 13 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~ 88 (338)
..+.+.....+.+|.+.|++++|+|++ ++|++|+.|++|++||+.+++....+. .+...+.+++|++ ++..++.+
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~- 137 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS- 137 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE-
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE-
Confidence 446777888999999999999999999 899999999999999999887665554 4666788888877 33444433
Q ss_pred CccCCCCCceeEEEEccCCeEEEeecC---CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEE
Q 019603 89 KYNLDSTGESLRYLSMYDNRILRYFKG---HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTV 163 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~~~~---H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~ 163 (338)
+.++.+++|++.+ +....+.. |...|.+++|+|++++|++|+.|+.|++||++ +++...+..+.. ..+
T Consensus 138 -----~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 138 -----SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp -----ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEE
T ss_pred -----eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEE
Confidence 2348999999986 44555544 45889999999999999999999999999994 555555655443 458
Q ss_pred EEcCCCC-EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC-CCCEEEEEecCCcEEEEEccCCeeEEEe
Q 019603 164 AFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 164 ~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~i~~~~~d~~i~i~~~~~~~~~~~~ 241 (338)
+|+|++. ++++++.|+.|++||++............ +|...|.++.|+| +++++++++.|+.|++||+.+++....+
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 8999998 99999999999999998643222112222 5788999999999 9999999999999999999877655444
Q ss_pred eeCC-----CCC----------CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC--CCCceEEEEEcCCCceE
Q 019603 242 SLEP-----SPN----------TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMF 304 (338)
Q Consensus 242 ~~~~-----~~~----------~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l 304 (338)
..+. +.. .+..++|+|++++ +|+.||.|++||+.+++.+..+.+ |.+.+.+++|+|++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l 367 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVL 367 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEE
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEE
Confidence 4322 111 2233566677766 778999999999999999999987 56888888999999999
Q ss_pred Eeec-ceEEEeeeC
Q 019603 305 VAAS-SVLSFWIPN 317 (338)
Q Consensus 305 ~s~s-~~~~iw~~~ 317 (338)
++++ +.+++|.+.
T Consensus 368 ~s~sd~~i~iw~~~ 381 (383)
T 3ei3_B 368 ASGMGFNILIWNRE 381 (383)
T ss_dssp EEEETTEEEEEECC
T ss_pred EEecCCcEEEEecC
Confidence 9987 579999764
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.8e-38 Score=277.80 Aligned_cols=290 Identities=14% Similarity=0.247 Sum_probs=235.4
Q ss_pred HhccccceeeccCCcceeEEEeecC-CCEEEEeeCCCcEEEEEcCCCe-----eEeEEeecccCeeeEEEeecCCeeEEe
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRK-DDLLVTASDDDSVRLYDIVSAK-----LIKTTYHKKHGADCVCFTHHPSSVICS 87 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
.+.+.+..+|.||.+.|++|+|+|+ +++|+|||.|++|+|||+.+.+ +...+.+|...+.+++|++++..++.+
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 3455667789999999999999997 6899999999999999997643 455667777889999998877766654
Q ss_pred cCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeee-eeecC--ccEEE
Q 019603 88 TKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI-LRLRG--RPTVA 164 (338)
Q Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~-~~~~~--~~~~~ 164 (338)
+ .++.+++|+............+...+..+.+++++++|++|+.|+.+++||++....... ...+. ...+.
T Consensus 105 ~------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 105 S------WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp E------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred c------ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 3 348899999999999888999999999999999999999999999999999876543221 11222 23466
Q ss_pred EcCC--CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEee
Q 019603 165 FDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 165 ~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
+.++ ..++++++.|+.|++||++.... .....+|...|.+++|+|+++++++++.|+.|++||..+.+....+.
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 254 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKL----KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 254 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCce----eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec
Confidence 7665 45788999999999999876421 23445788999999999999999999999999999999887766554
Q ss_pred eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee---------CCCCceEEEEEcCCCceEEeec--ceE
Q 019603 243 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---------GNIGVVACLKWAPRRAMFVAAS--SVL 311 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~l~s~s--~~~ 311 (338)
. ...+..+.|+|++.++ +++.|+.|++||++++..+..++ +|.+.|++|+|+|++++|++|+ +.|
T Consensus 255 ~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 255 G---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLV 330 (340)
T ss_dssp C---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred C---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 3 3468899999987655 56679999999999877666553 6889999999999999999987 579
Q ss_pred EEeeeC
Q 019603 312 SFWIPN 317 (338)
Q Consensus 312 ~iw~~~ 317 (338)
+||...
T Consensus 331 ~iW~~~ 336 (340)
T 4aow_A 331 RVWQVT 336 (340)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999764
No 23
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-38 Score=279.62 Aligned_cols=252 Identities=14% Similarity=0.248 Sum_probs=202.8
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
++..+.+|.+.|++++|+|+|++|+||+.|++|+|||+..+..
T Consensus 1 ~~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------------------------------------- 43 (297)
T 2pm7_B 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------------------------------------- 43 (297)
T ss_dssp -CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------------------------
T ss_pred CceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------------------------
Confidence 3567889999999999999999999999999999999863210
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcce--eeeeeecC--ccEEEEcCC--CC
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNAC--QGILRLRG--RPTVAFDQQ--GL 170 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~--~~~~~~~~--~~~~~~~~~--~~ 170 (338)
+++..+.+|.+.|++++|++. +++|+|||.|++|++||++.++. ...+..+. ...++|+|+ +.
T Consensus 44 ---------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~ 114 (297)
T 2pm7_B 44 ---------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP 114 (297)
T ss_dssp ---------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred ---------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc
Confidence 122346789999999999864 78999999999999999987743 33333333 345889987 88
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC-------------CCEEEEEecCCcEEEEEccCCee
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-------------GKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-------------~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
++++++.|+.|++||++..... ......+|...|.++.|+|+ ++++++++.|+.|++||..++..
T Consensus 115 ~l~s~s~d~~v~~wd~~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~ 192 (297)
T 2pm7_B 115 MLLVASSDGKVSVVEFKENGTT--SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (297)
T ss_dssp EEEEEETTSEEEEEEBCSSSCB--CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT
T ss_pred EEEEEECCCcEEEEEecCCCce--eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc
Confidence 9999999999999998764221 12345578889999999997 56899999999999999876642
Q ss_pred --EEEeeeCCCCCCCeeEEECCCC---CEEEEEcCCCcEEEEECCCCC---eEeEe--eCCCCceEEEEEcCCCceEEee
Q 019603 238 --RCGFSLEPSPNTNTEATFTPDG---QYVVSGSGDGTLHAWNINTRN---EVACW--NGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 238 --~~~~~~~~~~~~~~~~~fs~~~---~~l~sgs~Dg~i~vWd~~~~~---~~~~~--~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
.....+.+|...+.+++|+|++ ++|+|++.|++|++||+.+.. ....+ ..|.+.|++++|+|++++||++
T Consensus 193 ~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 193 TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence 2334566788899999999995 899999999999999998643 22333 5788999999999999999998
Q ss_pred c--ceEEEeeeCC
Q 019603 308 S--SVLSFWIPNP 318 (338)
Q Consensus 308 s--~~~~iw~~~~ 318 (338)
+ +.++||..+.
T Consensus 273 ~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 273 GGDNKVTLWKENL 285 (297)
T ss_dssp ETTSCEEEEEECT
T ss_pred cCCCcEEEEEECC
Confidence 7 5799998653
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=279.84 Aligned_cols=247 Identities=16% Similarity=0.226 Sum_probs=217.8
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
....+.+|...|.+++|++++.+++|++.|++|++||+.+++++..+..+...+..++|++++..+++++ .++.
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~------~dg~ 145 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT------HVGK 145 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEEC------TTSE
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEc------CCCc
Confidence 4456889999999999999999999999999999999999999888877777788889988877666543 3489
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAM 176 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 176 (338)
+++|++.+++....+..|...|.+++|+|++++|++|+.|++|++||++++++...+..+.. ..++|+|++.++++++
T Consensus 146 v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp EEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred EEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999988777765543 4689999999999999
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
.|+.|++||++.... ...+.+|...|.+++|+|+++++++++.|+.|++||+.+++.... +..|...+.+++|+
T Consensus 226 ~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s 299 (321)
T 3ow8_A 226 DDGYIKIYDVQHANL----AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT--FFDHQDQVWGVKYN 299 (321)
T ss_dssp TTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEC
T ss_pred CCCeEEEEECCCcce----eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE--EcCCCCcEEEEEEC
Confidence 999999999875431 234567889999999999999999999999999999988876654 45677789999999
Q ss_pred CCCCEEEEEcCCCcEEEEECC
Q 019603 257 PDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 257 ~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
|++++|++++.||.|++||+.
T Consensus 300 ~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 300 GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999973
No 25
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-37 Score=280.67 Aligned_cols=291 Identities=11% Similarity=0.099 Sum_probs=215.0
Q ss_pred CCcceeEEEeecCCCEEEEeeCCC-------cEEEEEcCCCeeE--------eEEeecccCeeeEEEeecCCeeEEecCc
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDD-------SVRLYDIVSAKLI--------KTTYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~-------~i~iWd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
-+.||++++|+|||++|++||.|. .|++|++..+... ..+....+....+++++++..++++...
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~ 92 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNE 92 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCC
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECC
Confidence 357999999999999999998654 5999998755321 1111122222334455566655543221
Q ss_pred c-----CCCCCceeEEEEccCCe-EEE---e-----ecCCccceEEEEEcCCCCEEE--EEECCCeEEEEECCCcceeee
Q 019603 91 N-----LDSTGESLRYLSMYDNR-ILR---Y-----FKGHKERVISLCMSPVNDSFM--SGSLDHSVRIWDLRVNACQGI 154 (338)
Q Consensus 91 ~-----~~~~~~~i~~~~~~~~~-~~~---~-----~~~H~~~V~~l~~~~~~~~l~--Sgs~D~~I~iWd~~~~~~~~~ 154 (338)
+ ..+.++.+|+|++...+ .+. . ...+...+.+++|+|||++++ |++.|++|+|||++++++...
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 1 12345789999987542 111 1 123556799999999999865 556899999999999988766
Q ss_pred eeecC-ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC----cEEE
Q 019603 155 LRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYV 229 (338)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~----~i~i 229 (338)
+...+ ...++|+|+|.++++++.+ .+.+|+...... .......+|...+.++.|+|+++++++++.++ .+++
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 65433 3568999999999998865 456666543221 11222345777899999999999999999887 5788
Q ss_pred EEccCCeeEE--EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe-eCCCCceEEEEEcCCCceEEe
Q 019603 230 LDAYGGEKRC--GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 230 ~~~~~~~~~~--~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s 306 (338)
|+...+.... ...+..|...+++++|+|+|++||+|+.|++|+|||+.+++++..+ .+|.+.|++|+|+||+++||+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS 329 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS 329 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence 8877664332 3455677788999999999999999999999999999999998875 799999999999999999999
Q ss_pred ec--ceEEEeeeCCC
Q 019603 307 AS--SVLSFWIPNPS 319 (338)
Q Consensus 307 ~s--~~~~iw~~~~~ 319 (338)
|| .+++||.+|..
T Consensus 330 ~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 330 VSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSEEEEEECCTT
T ss_pred EeCCCeEEEEEcCCC
Confidence 97 68999988643
No 26
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-38 Score=292.34 Aligned_cols=250 Identities=19% Similarity=0.317 Sum_probs=217.1
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
.......+.+|.+.|++++|+|++++|+||+.|++|++||+.+++++..+..|...+.+++|++++..+++++ .
T Consensus 139 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s------~ 212 (410)
T 1vyh_C 139 TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS------R 212 (410)
T ss_dssp TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE------T
T ss_pred CCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe------C
Confidence 3456778999999999999999999999999999999999999999888888888899999988777666543 3
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCC-----
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQ----- 168 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~----- 168 (338)
++++++||+.++.++..+.+|...|.++.++|++++|++|+.|++|++||++++++...+..+.. ..+.|+|+
T Consensus 213 D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 213 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292 (410)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccc
Confidence 58999999999999999999999999999999999999999999999999999888777665544 34778775
Q ss_pred ---------------CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc
Q 019603 169 ---------------GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 233 (338)
Q Consensus 169 ---------------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~ 233 (338)
+.++++++.|+.|++||++.... ...+.+|...|.++.|+|+++++++++.|+.|++||..
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce----EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 67899999999999999876431 23345788899999999999999999999999999998
Q ss_pred CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 234 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
+++....+ ..|...+++++|+|++++|+||+.||+|++|+++
T Consensus 369 ~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 369 NKRCMKTL--NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp TSCCCEEE--ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCceEEEE--cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 87765544 4666789999999999999999999999999864
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.4e-37 Score=273.28 Aligned_cols=279 Identities=13% Similarity=0.164 Sum_probs=232.7
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeE---eEEe--ecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLI---KTTY--HKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
...+|.+.|++++|+|++++|++++ |+.|++||+.++... .... .+...+.+++|++++..+++++ .+
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d 118 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG------EA 118 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE------SS
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc------CC
Confidence 3448999999999999999999999 999999999876532 2222 4556788888887766665543 34
Q ss_pred ceeEEEEccCCe--EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEE
Q 019603 97 ESLRYLSMYDNR--ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~--~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (338)
+.+++|++.+++ ....+.+|...|.+++|+|+++++++++.|+.|++||+++++....+..+.. ..+.++|++..+
T Consensus 119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 198 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEE
Confidence 789999998876 6677889999999999999999999999999999999999887777665443 457899999999
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
++++.|+.+++||++.... .....+...+.++.|+|+++++++++.++.+++|+..+++.. ....|...+..
T Consensus 199 ~~~~~dg~i~~~d~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~v~~ 270 (337)
T 1gxr_A 199 WTGGLDNTVRSWDLREGRQ-----LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY---QLHLHESCVLS 270 (337)
T ss_dssp EEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE---EECCCSSCEEE
T ss_pred EEEecCCcEEEEECCCCce-----EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE---EEcCCccceeE
Confidence 9999999999999876421 111235677999999999999999999999999999877643 45667788999
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeee
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~ 316 (338)
++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++ +.+++|..
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999999999998887544 5789999999999999999986 56899964
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-37 Score=269.79 Aligned_cols=286 Identities=16% Similarity=0.228 Sum_probs=237.8
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
..+++...|.+|.+.|++++| |++++|++|+.|+.|++||+.+++....+..+...+.+++|++++..++.++
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------ 78 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG------ 78 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE------
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec------
Confidence 356788899999999999999 9999999999999999999999988888888888899999998877666543
Q ss_pred CCceeEEEEccCC---eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc--EEEEcC-C
Q 019603 95 TGESLRYLSMYDN---RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQ-Q 168 (338)
Q Consensus 95 ~~~~i~~~~~~~~---~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~-~ 168 (338)
.++.+++|++.+. +.+..+.+|...|.++.| +++++++|+.|+.|++|| .++....+..+... .+.+.+ +
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT
T ss_pred CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCC
Confidence 3478999998764 567788999999999999 577999999999999999 44555555544443 356666 8
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
+..+++++.|+.+++||.+. ........+...+.++.|+|++. +++++.++.+++||..+++....+. .|..
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~ 226 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDK-----VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--GHES 226 (313)
T ss_dssp TTEEEEEETTSCEEEEETTE-----EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE--CCSS
T ss_pred CCEEEEEECCCCEEEEecCc-----eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh--cCCc
Confidence 89999999999999999432 11122223788899999999998 8999999999999999887766554 5667
Q ss_pred CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-ceEEEeeeCCCC
Q 019603 249 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS 320 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw~~~~~~ 320 (338)
.+++++|+|++ +|++++.||.|++||+.+++.+..+..|.+.|.+++|+|++++++++. +.+++|......
T Consensus 227 ~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 227 FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 89999999999 688999999999999999999999999999999999999999665443 579999876443
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=277.74 Aligned_cols=245 Identities=18% Similarity=0.258 Sum_probs=200.0
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeE----EeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKT----TYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
...|...|++++|+|++ .|++|+.|++|+|||+.+++.+.. ..+|...+.+++|++++..++.++ .+++
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs------~d~~ 150 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS------KDIC 150 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE------TTSC
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe------CCCe
Confidence 34567889999999985 788999999999999998875433 335667899999988877766543 3489
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecC----ccEEEEcCC-CCEE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQ-GLVF 172 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~----~~~~~~~~~-~~~~ 172 (338)
|++||+.+++++..+.+|++.|++++|+|++. +|+|||.|++|++||++++++...+.... ...+.|+|+ +.++
T Consensus 151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcce
Confidence 99999999999999999999999999999875 78999999999999999988766554322 245788885 5688
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
++|+.|+.|++||+++... . ..+.+|...|.+++|+|++ +++++++.|+.|++||..+++. ++..+|...|+
T Consensus 231 ~sg~~dg~v~~wd~~~~~~--~--~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~---~~~~~H~~~V~ 303 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSC--V--LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL---FRSQAHRDFVR 303 (344)
T ss_dssp EEEETTSEEEEEESCC--C--C--EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE---EEECCCSSCEE
T ss_pred EEeccCCcEEEEECCCCcE--E--EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE---EEEcCCCCCEE
Confidence 9999999999999986542 2 3345788999999999998 4788999999999999988764 35678888999
Q ss_pred eEEECCCCC-EEEEEcCCCcEEEEECCCCCe
Q 019603 252 EATFTPDGQ-YVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 252 ~~~fs~~~~-~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
+++|+|+++ +|+|||.||+|++|++.+...
T Consensus 304 ~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 304 DATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999999986 577999999999999987544
No 30
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-36 Score=290.11 Aligned_cols=283 Identities=20% Similarity=0.368 Sum_probs=238.0
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
.+++..+.+|.+.|++++|+|++++|++++.|++|++||.. ++.+..+..+...+..++++++...++.++ .+
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~------~d 324 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASAS------DD 324 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEE------TT
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEe------CC
Confidence 34567888999999999999999999999999999999975 566667777778888888888776665443 34
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAV 174 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 174 (338)
+++++|+... +.+..+.+|...|.+++|+|++++|++|+.|++|++||. ++++...+..+.. ..++|+|++..+++
T Consensus 325 ~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 325 KTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp SCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 7899999765 456778999999999999999999999999999999995 4555555555443 35889999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
++.|+.|++||... .. .....+|...|.++.|+|+++++++++.|+.+++|+.. ++... .+.+|...+.+++
T Consensus 403 ~~~d~~v~~~~~~~----~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~--~~~~~~~~v~~~~ 474 (577)
T 2ymu_A 403 ASDDKTVKLWNRNG----QL-LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQ--TLTGHSSSVRGVA 474 (577)
T ss_dssp EETTSEEEEECTTC----CE-EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEE--EEECCSSCEEEEE
T ss_pred EeCCCEEEEEeCCC----CE-EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEE--EEcCCCCCEEEEE
Confidence 99999999999532 11 22345788899999999999999999999999999964 44443 3446677899999
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
|+|++++|++++.|+.|++||. +++++..+.+|.+.|++|+|+|++++||+++ +.+++|..+
T Consensus 475 ~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 475 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp ECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999999999999999996 6788999999999999999999999999987 579999743
No 31
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.4e-38 Score=279.95 Aligned_cols=287 Identities=20% Similarity=0.294 Sum_probs=227.8
Q ss_pred eeeccCCcceeEEEeecCCCEE-EEeeC---CCcEEEEEcCCCeeEeEE-eecccCeeeEEEeec---CCeeEEecCccC
Q 019603 21 AIFSDFGGKINSLDFHRKDDLL-VTASD---DDSVRLYDIVSAKLIKTT-YHKKHGADCVCFTHH---PSSVICSTKYNL 92 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l-~s~s~---D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 92 (338)
..+.+|.+.|++++|+|+++.+ ++|+. |++|++||+.+++..... ..+...+.+++|+++ +..++.++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---- 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD---- 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE----
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec----
Confidence 4557899999999999999755 55665 999999999988765432 355678888888876 34444432
Q ss_pred CCCCceeEEEEccCCe-EEEeecCCccceEEEE------EcCCCCEEEEEECCCeEEEEECCCcc-eeeeeeecCc----
Q 019603 93 DSTGESLRYLSMYDNR-ILRYFKGHKERVISLC------MSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGR---- 160 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~-~~~~~~~H~~~V~~l~------~~~~~~~l~Sgs~D~~I~iWd~~~~~-~~~~~~~~~~---- 160 (338)
.++.+++|++.+++ .+..+.+|...|.++. |+|++++|++|+.|++|++||++.++ ....+..+..
T Consensus 88 --~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 88 --FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp --TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred --CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 34889999999887 8888999999999995 46889999999999999999998876 4555543221
Q ss_pred c--EEE----EcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC---CCCEEEEEecCCcEEEEE
Q 019603 161 P--TVA----FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN---DGKSMLLTTTNNNIYVLD 231 (338)
Q Consensus 161 ~--~~~----~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp---~~~~i~~~~~d~~i~i~~ 231 (338)
. .+. +++++..+++++.|+.|++||++.... .....+...+.++.|+| ++.++++++.++.|++||
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 2 244 578999999999999999999886431 22235678899999999 899999999999999999
Q ss_pred ccCCeeEEEe---eeCCCCCCCeeEEECCCCC-EEEEEcCCCcEEEEECCCC-------------------CeEeEeeCC
Q 019603 232 AYGGEKRCGF---SLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTR-------------------NEVACWNGN 288 (338)
Q Consensus 232 ~~~~~~~~~~---~~~~~~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~h 288 (338)
..+++....+ ....|...+.+++|+|+++ +|++|+.||.|++||+.++ +.+..+.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 8765443322 2336778899999999999 8999999999999999754 356778899
Q ss_pred CCceEEEEEcCCCceEE-eec--ceEEEeeeCC
Q 019603 289 IGVVACLKWAPRRAMFV-AAS--SVLSFWIPNP 318 (338)
Q Consensus 289 ~~~v~~l~~~p~~~~l~-s~s--~~~~iw~~~~ 318 (338)
.+.|++++|+|++++|+ +++ +.+++|....
T Consensus 321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 99999999999999998 675 5799997653
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-37 Score=279.36 Aligned_cols=280 Identities=13% Similarity=0.201 Sum_probs=229.2
Q ss_pred ccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEc----CCCe------eEeEEee----------cccCeeeEEEeecCC
Q 019603 24 SDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDI----VSAK------LIKTTYH----------KKHGADCVCFTHHPS 82 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~----~~~~------~~~~~~~----------~~~~~~~~~~~~~~~ 82 (338)
..|.++|++++|+|+|+ +|++|+.|+.|++||+ .+++ ....+.+ +...+.+++|++++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34569999999999999 9999999999999999 8887 3444433 344788888988776
Q ss_pred eeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee-----
Q 019603 83 SVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL----- 157 (338)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~----- 157 (338)
.+++++ .++.+++|+ .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..
T Consensus 122 ~l~~~~------~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 122 SIVTGV------ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp EEEEEE------TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred EEEEEe------CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 666543 247899999 67788889999999999999999999999999999999999987655432211
Q ss_pred ---------------------------------------------------cC--ccEEEEcCCCCEEEEEEcCCeEEEE
Q 019603 158 ---------------------------------------------------RG--RPTVAFDQQGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 158 ---------------------------------------------------~~--~~~~~~~~~~~~~~~~~~dg~i~i~ 184 (338)
+. ...+.|+|++..+++++.|+.|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 11 1236789999999999999999999
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEE
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 264 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~s 264 (338)
|++.... .....++...+.++.|+|++ ++++++.++.+++||..+++....+. .+...+.+++|+|++++|++
T Consensus 275 d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 275 HGGNGNS----QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI--VDGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp CSSSBSC----SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE--CTTCCEEEEEECTTSSEEEE
T ss_pred ECCCCcc----ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc--cCCccEEEEEEcCCCCEEEE
Confidence 9876432 22345678899999999999 99999999999999998887665544 45568999999999999999
Q ss_pred EcCCCcEEEEECCCCC--------------------eEeEeeCCCC--ceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 265 GSGDGTLHAWNINTRN--------------------EVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 265 gs~Dg~i~vWd~~~~~--------------------~~~~~~~h~~--~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++ +.+++|..+
T Consensus 348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999877 8889999976 999999999999999886 568999754
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.4e-37 Score=275.55 Aligned_cols=249 Identities=20% Similarity=0.328 Sum_probs=207.9
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC----eeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA----KLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
...++..+..|.+.|.+++|+|++++|++|+.|+.|++||+.++ +....+.+|...+.++.|+... .++.+
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~---- 160 (340)
T 1got_B 86 TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTS---- 160 (340)
T ss_dssp TCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEE----
T ss_pred CCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEE----
Confidence 34566778899999999999999999999999999999999865 3445566677778888886554 33332
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCC
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQG 169 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~ 169 (338)
+.++++++||+.+++.+..+.+|.+.|++++|+|++++|+||+.|++|++||++++++...+..+.. ..++|+|++
T Consensus 161 --s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 161 --SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp --ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS
T ss_pred --ECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC
Confidence 2358999999999999999999999999999999999999999999999999999988777766554 458899999
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
..+++++.|+.|++||++.... ...+....+...|.++.|+|+++++++++.|+.|++||..+++....+ .+|...
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--~~h~~~ 314 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNR 314 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECCSSC
T ss_pred CEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--ecCCCc
Confidence 9999999999999999876321 111111123357999999999999999999999999999887765544 567788
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
+.+++|+|+|++|+||+.||.|+|||
T Consensus 315 v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999997
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.6e-37 Score=276.24 Aligned_cols=287 Identities=15% Similarity=0.206 Sum_probs=229.4
Q ss_pred eeccCCcceeEEEeecC----CCEEEEeeCCCcEEEEEcCCCeeEeEEeec-----ccCeeeEEEeecCC----eeEEec
Q 019603 22 IFSDFGGKINSLDFHRK----DDLLVTASDDDSVRLYDIVSAKLIKTTYHK-----KHGADCVCFTHHPS----SVICST 88 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~----~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~ 88 (338)
...+|.++|++++|+|+ ..++++++.|+.|++||+.+++.+..+..+ ...+.+++|+++.. .++.+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~- 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA- 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE-
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe-
Confidence 44589999999999984 456777777779999999988766655433 35588888888743 33332
Q ss_pred CccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeee---eecC--ccE
Q 019603 89 KYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGIL---RLRG--RPT 162 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~---~~~~--~~~ 162 (338)
+.++.+++|++.+++.+..+.+|...|++++|+| ++++|++|+.|++|++||+++++....+ ..+. ...
T Consensus 92 -----~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 92 -----GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166 (366)
T ss_dssp -----ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred -----cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence 2348999999999999999999999999999999 8899999999999999999998877666 2233 345
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCC----------------C--------CeeEEecCCCCceEEEEEcCCCCEE
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG----------------P--------FDTFLVGGDTAEVCDIKFSNDGKSM 218 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~----------------~--------~~~~~~~~~~~~i~~v~~sp~~~~i 218 (338)
+.|+|++..+++++.|+.|++||++..... . .......+|...|.++.|+ ++++
T Consensus 167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 889999999999999999999998753110 0 0011223477889999998 6799
Q ss_pred EEEecCCcEEEEEccCCee------------EEEeeeCCCCCCCeeEEECCC--CCEEEEEcCCCcEEEEECCCCCe---
Q 019603 219 LLTTTNNNIYVLDAYGGEK------------RCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLHAWNINTRNE--- 281 (338)
Q Consensus 219 ~~~~~d~~i~i~~~~~~~~------------~~~~~~~~~~~~~~~~~fs~~--~~~l~sgs~Dg~i~vWd~~~~~~--- 281 (338)
++++.|+.|++||..++.. ........|...+..++|+|+ +++|++|+.||.|++||+.+++.
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 9999999999999876643 223344556677899999999 99999999999999999998753
Q ss_pred -EeEeeCC--CCceEEEEEcCCCceEEeec--ceEEEeee
Q 019603 282 -VACWNGN--IGVVACLKWAPRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 282 -~~~~~~h--~~~v~~l~~~p~~~~l~s~s--~~~~iw~~ 316 (338)
...+.+| .+.|++++|+|++++|++++ +.+++|.+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 4478887 79999999999999999997 57899965
No 35
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.9e-38 Score=278.86 Aligned_cols=250 Identities=17% Similarity=0.227 Sum_probs=194.6
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
.+.+|.+.|++++|+|+|++|+|||.|++|+|||+.++...
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~--------------------------------------- 48 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI--------------------------------------- 48 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------------------------
Confidence 56799999999999999999999999999999998654311
Q ss_pred EEccCCeEEEeecCCccceEEEEEcC--CCCEEEEEECCCeEEEEECCCcce--eeeeeecC--ccEEEEcCC--CCEEE
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNAC--QGILRLRG--RPTVAFDQQ--GLVFA 173 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~--~~~~l~Sgs~D~~I~iWd~~~~~~--~~~~~~~~--~~~~~~~~~--~~~~~ 173 (338)
.+..+.+|.+.|++++|++ ++++|+|||.|++|++||+++++. ...+..+. ...++|+|+ +.+++
T Consensus 49 -------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~la 121 (316)
T 3bg1_A 49 -------LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILA 121 (316)
T ss_dssp -------EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEE
T ss_pred -------EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEE
Confidence 1234678999999999986 478999999999999999988743 33333333 356899997 78999
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC-----------------CCEEEEEecCCcEEEEEccCCe
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-----------------GKSMLLTTTNNNIYVLDAYGGE 236 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-----------------~~~i~~~~~d~~i~i~~~~~~~ 236 (338)
+++.|+.|++||++...... ......+|...+.++.|+|+ ++++++++.|+.|++||...+.
T Consensus 122 sgs~D~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 200 (316)
T 3bg1_A 122 CGSSDGAISLLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200 (316)
T ss_dssp EECSSSCEEEEEECSSSCEE-ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS
T ss_pred EEcCCCCEEEEecCCCCCcc-eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC
Confidence 99999999999987532100 01123467778999999997 4689999999999999986542
Q ss_pred -eEEEeeeCCCCCCCeeEEECCCC----CEEEEEcCCCcEEEEECCCC----CeEeEeeCCCCceEEEEEcCCCceEEee
Q 019603 237 -KRCGFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 237 -~~~~~~~~~~~~~~~~~~fs~~~----~~l~sgs~Dg~i~vWd~~~~----~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 307 (338)
......+.+|...+.+++|+|++ ++|+||+.||+|++|++.+. .....+..|.+.|++++|+|++++||++
T Consensus 201 ~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 201 QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 23344566788899999999987 89999999999999999762 1234567789999999999999999998
Q ss_pred c--ceEEEeeeCC
Q 019603 308 S--SVLSFWIPNP 318 (338)
Q Consensus 308 s--~~~~iw~~~~ 318 (338)
+ +++++|....
T Consensus 281 ~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 281 GGDNKVTLWKESV 293 (316)
T ss_dssp ESSSCEEEEEECT
T ss_pred cCCCeEEEEEECC
Confidence 7 5799997653
No 36
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-36 Score=272.15 Aligned_cols=287 Identities=11% Similarity=0.108 Sum_probs=232.2
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe--eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK--LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
.+..|.++|++++|+|++++|++|+.|+.|++||+.+++ .+..+..+...+.+++|++++..+++++ .++.+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~dg~i 76 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG------TDRNA 76 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE------TTSCE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc------CCCeE
Confidence 456799999999999999999999999999999999987 7777777888899999988777666543 34789
Q ss_pred EEEEccCCeEEEe--ecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce---eeeee-ec--CccEEEEcCCCCE
Q 019603 100 RYLSMYDNRILRY--FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC---QGILR-LR--GRPTVAFDQQGLV 171 (338)
Q Consensus 100 ~~~~~~~~~~~~~--~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~---~~~~~-~~--~~~~~~~~~~~~~ 171 (338)
++|++.+++.... +.+|...|.+++|+|++++|++|+.|+.|++||++.++. ...+. .+ ....+.|+|++.+
T Consensus 77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 9999998875444 478999999999999999999999999999999987653 22221 11 2345889999999
Q ss_pred EEEEEcCCeEEEEeCCCCCC--------------CCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee
Q 019603 172 FAVAMEAGAIKLFDSRSYDK--------------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
+++++.|+.+++||++.... .........+|...+.++.|+|+++++++++.|+.|++||..+++.
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 236 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 99999999999999752110 0111233446788899999999999999999999999999988877
Q ss_pred EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC--CC--------------------------------eE-
Q 019603 238 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT--RN--------------------------------EV- 282 (338)
Q Consensus 238 ~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~--~~--------------------------------~~- 282 (338)
...+. .+...+.+++|+|++++|++| .|+.|++|++.+ ++ ..
T Consensus 237 ~~~~~--~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 237 VATLA--SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp EEEEE--CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred eEEEc--cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 66554 455679999999999999888 899999999987 31 10
Q ss_pred -----eEe-eCCCCceEEEEEc-CCC---ceEEeec--ceEEEeeeC
Q 019603 283 -----ACW-NGNIGVVACLKWA-PRR---AMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 283 -----~~~-~~h~~~v~~l~~~-p~~---~~l~s~s--~~~~iw~~~ 317 (338)
..+ .+|.+.|++++|+ +++ .+|++++ +.+++|...
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 333 4899999999977 566 8999997 579999754
No 37
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=280.19 Aligned_cols=282 Identities=15% Similarity=0.276 Sum_probs=215.3
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe-----------eEeEEeecc------------cCeeeEEEeecC
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK-----------LIKTTYHKK------------HGADCVCFTHHP 81 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~-----------~~~~~~~~~------------~~~~~~~~~~~~ 81 (338)
.|.+.|++++|+|+|++|++|+.|+.|+|||+.+++ ....+..|. ..+..++|+++.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999998776 455666665 668889998876
Q ss_pred --CeeEEecCccCCCCCceeEEEEccCCeEE---------------------------------------Ee-ecCCccc
Q 019603 82 --SSVICSTKYNLDSTGESLRYLSMYDNRIL---------------------------------------RY-FKGHKER 119 (338)
Q Consensus 82 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------------------------------~~-~~~H~~~ 119 (338)
..++.+ +.++++++|++.+++.. +. ..+|...
T Consensus 106 ~~~~l~s~------s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 106 NAAQFLLS------TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp SSSEEEEE------ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred CcceEEEe------CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 344443 23589999999764432 12 4689999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCC-cceeeee-------eecC--ccEEEEcCCC-CEEEEEEcCCeEEEEeCCC
Q 019603 120 VISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGIL-------RLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRS 188 (338)
Q Consensus 120 V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-~~~~~~~-------~~~~--~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~ 188 (338)
|++++|+|++++|++| .|++|++||++. +++...+ ..+. ...+.|+|++ .++++++.||.|++||++.
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 9999999999999998 799999999984 4444332 1222 3458899998 8999999999999999987
Q ss_pred CCCCCCeeEEecCCCC------------ceEEEEEcCCCCEEEEEecCCcEEEEEccC-CeeEEEeeeCCCCCC------
Q 019603 189 YDKGPFDTFLVGGDTA------------EVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNT------ 249 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~------------~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~------ 249 (338)
............++.. .|.++.|+|+++++++++. +.|++||+.. ++....+..+.....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 5421111223344443 8999999999999999988 9999999986 655554544321111
Q ss_pred -------CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC---------------------------------C
Q 019603 250 -------NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN---------------------------------I 289 (338)
Q Consensus 250 -------~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h---------------------------------~ 289 (338)
+..++|+|++++|++|+.||.|++||+.+++.+ .+.+| .
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccC
Confidence 334899999999999999999999999988765 33333 4
Q ss_pred CceEEEEEcCCCceEEeecc-eEEEee
Q 019603 290 GVVACLKWAPRRAMFVAASS-VLSFWI 315 (338)
Q Consensus 290 ~~v~~l~~~p~~~~l~s~s~-~~~iw~ 315 (338)
..|.+++|+|++.+||+++. .+.+|.
T Consensus 417 ~~i~~~~~~p~~~~la~~~~~~~~~~~ 443 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVATTNNLYIFQ 443 (447)
T ss_dssp SCCCEEEECSSSSEEEEECSSCEEEEE
T ss_pred CceeEEEECCCCCEEEEEecceeeeec
Confidence 57889999999999999874 577773
No 38
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-36 Score=298.30 Aligned_cols=290 Identities=18% Similarity=0.259 Sum_probs=249.0
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
++.....|.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+..+...+.++.|++++..+++++ .
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~ 75 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS------D 75 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE------T
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe------C
Confidence 3566788999999999999999999999999999999999999999988888888999999999887776553 2
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeeeeeecCc--cEEEEcC-CCCE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRLRGR--PTVAFDQ-QGLV 171 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-~~~~~~~~~~~--~~~~~~~-~~~~ 171 (338)
++.+++|++.+++.+..+.+|.+.|++++|+|++++|++|+.|++|++||++.+ .+...+..+.. ..+.|+| ++..
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence 489999999999999999999999999999999999999999999999999876 45555554443 4578999 7889
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC--CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
+++++.||.|++||++.... . ......+...+.++.|+| ++.++++++.++.|++||..+++....+ ..|...
T Consensus 156 l~~~~~dg~v~vwd~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~ 230 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQSTP--N-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--EGHMSN 230 (814)
T ss_dssp EEEEETTSEEEEEETTCSSC--S-EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE--ECCSSC
T ss_pred EEEEeCCCeEEEEECCCCcc--e-eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE--cCCCCC
Confidence 99999999999999875432 2 223334457899999999 9999999999999999999888766544 456678
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc--eEEeec-ceEEEeee
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA--MFVAAS-SVLSFWIP 316 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s~s-~~~~iw~~ 316 (338)
+..++|+|++++|++++.||.|++||+.+++.+..+..|.+.|++++|+|++. ++++++ ..+.+|..
T Consensus 231 v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999987 466654 45666653
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.7e-37 Score=284.42 Aligned_cols=297 Identities=16% Similarity=0.162 Sum_probs=225.7
Q ss_pred hccccceeeccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEe--EEeecccCeeeEEEeec-CCeeEEecCc
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIK--TTYHKKHGADCVCFTHH-PSSVICSTKY 90 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 90 (338)
+.+.......+|...|++|+|+| ++.+|++|+.||+|+|||+.+++... ...+|...|.+++|++. +..++.+
T Consensus 107 ~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~--- 183 (435)
T 4e54_B 107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS--- 183 (435)
T ss_dssp TTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE---
T ss_pred cceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE---
Confidence 45566667788999999999999 56799999999999999998775433 33456778999999864 4444433
Q ss_pred cCCCCCceeEEEEccCCeEEEeecC--CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEc
Q 019603 91 NLDSTGESLRYLSMYDNRILRYFKG--HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFD 166 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~--H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~ 166 (338)
+.+++|++||+.++........ +...+.+++|+|++++|++|+.||+|++||++.+ ....+..+.. ..++|+
T Consensus 184 ---s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 184 ---SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp ---CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEEC
T ss_pred ---eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeec
Confidence 3458999999987655443333 4456789999999999999999999999999654 3444444443 457899
Q ss_pred CCCC-EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC
Q 019603 167 QQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 245 (338)
Q Consensus 167 ~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~ 245 (338)
|++. ++++++.|+.|++||++....... .....+|...|.+++|+|+++++++++.|+.|++||..+++....+..+.
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKAS-FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSC-CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred CCCceEEEEecCcceeeEEecccccccce-EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 9876 788999999999999986543211 11224678899999999999999999999999999998877655443332
Q ss_pred CC----CCCeeEEECCCCCEEEEEc------------CCCcEEEEECCCCCeEeEee-CCCCceEEE-EEcCCCceEEee
Q 019603 246 SP----NTNTEATFTPDGQYVVSGS------------GDGTLHAWNINTRNEVACWN-GNIGVVACL-KWAPRRAMFVAA 307 (338)
Q Consensus 246 ~~----~~~~~~~fs~~~~~l~sgs------------~Dg~i~vWd~~~~~~~~~~~-~h~~~v~~l-~~~p~~~~l~s~ 307 (338)
+. .....+.|+|++.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|++++||+|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg 418 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASA 418 (435)
T ss_dssp CCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEE
T ss_pred ccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEE
Confidence 21 2334567888877777664 34689999999999888764 788899987 799999999998
Q ss_pred c-ceEEEeeeCCC
Q 019603 308 S-SVLSFWIPNPS 319 (338)
Q Consensus 308 s-~~~~iw~~~~~ 319 (338)
+ ..|+||.+...
T Consensus 419 ~d~~i~iW~~~~g 431 (435)
T 4e54_B 419 MGYHILIWSQQEA 431 (435)
T ss_dssp CSSEEEECCCC--
T ss_pred cCCcEEEEECCcC
Confidence 7 57999966544
No 40
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.9e-37 Score=275.30 Aligned_cols=286 Identities=15% Similarity=0.213 Sum_probs=229.7
Q ss_pred HhccccceeeccCCcceeEEEeecC---CCEEEEeeCCCcEEEEEcCC-CeeE-eEEeecccCeeeEEEeecCCeeEEec
Q 019603 14 VRSMAMAAIFSDFGGKINSLDFHRK---DDLLVTASDDDSVRLYDIVS-AKLI-KTTYHKKHGADCVCFTHHPSSVICST 88 (338)
Q Consensus 14 ~~~~~~~~~~~~h~~~V~~l~~s~~---~~~l~s~s~D~~i~iWd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
...+.+...+.+|.+.|++++|+|+ |++|++|+.|+.|++||+.+ +..+ ..+..+...+.+++|++++..+++++
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 3456677889999999999999999 69999999999999999987 5544 56677788899999988777666543
Q ss_pred CccCCCCCceeEEEEccCCeEEEeecCCccceEEEEE--cCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEc
Q 019603 89 KYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCM--SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFD 166 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~--~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~ 166 (338)
.++.+++|++.+++.+. +.+|...|+++.| +|++++|++|+.|+.|++||++++++...+..+. ....+.
T Consensus 106 ------~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~ 177 (368)
T 3mmy_A 106 ------CDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCAD 177 (368)
T ss_dssp ------TTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEE
T ss_pred ------CCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEE
Confidence 34899999999988776 5679999999999 8999999999999999999999988877776554 445555
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCE----EEEEecCCcEEEEEccCCee-EEEe
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS----MLLTTTNNNIYVLDAYGGEK-RCGF 241 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~----i~~~~~d~~i~i~~~~~~~~-~~~~ 241 (338)
+.+..++++..++.+++|+++.... ............+.++.+.++... +++++.++.+++|+...... ....
T Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 178 VIYPMAVVATAERGLIVYQLENQPS--EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EETTEEEEEEGGGCEEEEECSSSCE--EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred ecCCeeEEEeCCCcEEEEEeccccc--hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 5566889999999999999875321 111111123344566666655544 99999999999999877632 1112
Q ss_pred eeCCCCC------------CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 242 SLEPSPN------------TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 242 ~~~~~~~------------~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
.+..|.. .+++++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|++++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 2223322 6899999999999999999999999999999999999999999999999999999999974
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=284.66 Aligned_cols=288 Identities=12% Similarity=0.204 Sum_probs=226.6
Q ss_pred ccceee-ccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCC---CeeE--eEEeecccCeeeEEEeecCCeeEEecCc
Q 019603 18 AMAAIF-SDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVS---AKLI--KTTYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 18 ~~~~~~-~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
+++..+ .+|.+.|++++|+| ++++|+||+.|++|++||+.+ +... .....+...+.+++|++++..++.++
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-- 130 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS-- 130 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE--
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe--
Confidence 456677 89999999999999 999999999999999999876 4321 11224667888999987666665543
Q ss_pred cCCCCCceeEEEEcc---CCeEEEeecC------------CccceEEEE--EcCCCCEEEEEECCCeEEEEECCCcceee
Q 019603 91 NLDSTGESLRYLSMY---DNRILRYFKG------------HKERVISLC--MSPVNDSFMSGSLDHSVRIWDLRVNACQG 153 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~---~~~~~~~~~~------------H~~~V~~l~--~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~ 153 (338)
.++.+++|++. +++....+.+ |...+.++. +++++++|++|+.|++|++||++++++..
T Consensus 131 ----~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 131 ----KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp ----TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred ----CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 34899999995 5554444333 455666666 55788999999999999999999999887
Q ss_pred eeee--cC--ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC----CCCEEEEEecCC
Q 019603 154 ILRL--RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN----DGKSMLLTTTNN 225 (338)
Q Consensus 154 ~~~~--~~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp----~~~~i~~~~~d~ 225 (338)
.+.. +. ...++|+|++..+++++.||.|++||++.... . ......+...|.++.|+| ++.++++++.|+
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~-~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL--I-RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE--E-EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE--E-EEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 7765 22 34588999999999999999999999986321 1 111125667899996654 577899999999
Q ss_pred cEEEEEccCCeeEEEeeeCC------------------------CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 226 NIYVLDAYGGEKRCGFSLEP------------------------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 226 ~i~i~~~~~~~~~~~~~~~~------------------------~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
.|++||+.+++....+..+. |...+.+++|+ ++++|++|+.||.|++||+.+++.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 99999999888776665331 44558889999 789999999999999999999988
Q ss_pred EeEeeC-------------------------------------CCCceEEEEEcCC--CceEEeec--ceEEEee
Q 019603 282 VACWNG-------------------------------------NIGVVACLKWAPR--RAMFVAAS--SVLSFWI 315 (338)
Q Consensus 282 ~~~~~~-------------------------------------h~~~v~~l~~~p~--~~~l~s~s--~~~~iw~ 315 (338)
...+.+ |.+.|++++|+++ +.+|++|+ +.|+||.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 877775 8999999999998 78999997 5799993
No 42
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3e-36 Score=268.34 Aligned_cols=277 Identities=16% Similarity=0.219 Sum_probs=228.1
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe---eEeEEeecccCeeeEEEeecCC-eeEEecCccCCC
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK---LIKTTYHKKHGADCVCFTHHPS-SVICSTKYNLDS 94 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 94 (338)
......+|.+.|++++|+|++++|++++.|+.|++||+.++. .......+...+.+++|++++. .+++++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------ 76 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT------ 76 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE------
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc------
Confidence 345567999999999999999999999999999999998776 3344556777899999998877 665543
Q ss_pred CCceeEEEEc-cCCeEEEeecC--CccceEEEEEcCCCCEEEEEECCCeEEEEECCC---------cceeeeeeecC-cc
Q 019603 95 TGESLRYLSM-YDNRILRYFKG--HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV---------NACQGILRLRG-RP 161 (338)
Q Consensus 95 ~~~~i~~~~~-~~~~~~~~~~~--H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~---------~~~~~~~~~~~-~~ 161 (338)
.++.+++|++ .+++. ..+.+ |...|.+++|+| +++|++++.|+.|++||++. +++...+.... ..
T Consensus 77 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154 (342)
T ss_dssp TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceE
Confidence 2478999999 77755 67788 999999999999 99999999999999999987 66555544222 23
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCC-CCCCCCeeEEecCCCCceEEEEEcC-CCCEEEEEecCCcEEEEEccCC----
Q 019603 162 TVAFDQQGLVFAVAMEAGAIKLFDSRS-YDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG---- 235 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~i~~~~~d~~i~i~~~~~~---- 235 (338)
.+.+++++ +++++.|+.+++||++. ... .. ......+...+.++.|+| +++++++++.++.+++|+....
T Consensus 155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 230 (342)
T 1yfq_A 155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDD-NG-TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp EEEECSSE--EEEEESTTEEEEEESSCCTTC-CC-EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred EEEecCCc--EEEEeCCCeEEEEECCccccc-cc-eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence 46777776 88999999999999986 432 12 223346778899999999 9999999999999999998765
Q ss_pred --eeEEEeeeCCC-------CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC-CCceEEEEEcCCCceEE
Q 019603 236 --EKRCGFSLEPS-------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFV 305 (338)
Q Consensus 236 --~~~~~~~~~~~-------~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~ 305 (338)
+....+..+.. ...+.+++|+|++++|++|+.||.|++||+.+++++..+.+| .+.|++++ |++++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~ 308 (342)
T 1yfq_A 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILC 308 (342)
T ss_dssp TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEE
T ss_pred ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEE
Confidence 44444444322 348999999999999999999999999999999999999998 99999999 9999999
Q ss_pred eecc
Q 019603 306 AASS 309 (338)
Q Consensus 306 s~s~ 309 (338)
+++.
T Consensus 309 s~s~ 312 (342)
T 1yfq_A 309 LATS 312 (342)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9974
No 43
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.7e-36 Score=266.49 Aligned_cols=248 Identities=17% Similarity=0.261 Sum_probs=204.0
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
++..|.+|.+.|++++|+|+|++|+||+.|++|++||+.+++.+..+.+|...+.++.|++++..++.++ .+++
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~D~~ 130 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS------RDKT 130 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEE------TTSC
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEe------CCCe
Confidence 4678899999999999999999999999999999999999999988888888899999988776666543 3589
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCC------CEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCC
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVN------DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGL 170 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~------~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~ 170 (338)
+++|++. ++.+..+.+|...|.++.|.|.. ..+++|+.|++|++||++..++...+..+.. ..++|+|++.
T Consensus 131 i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~ 209 (319)
T 3frx_A 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209 (319)
T ss_dssp EEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS
T ss_pred EEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC
Confidence 9999996 55778889999999999999854 4899999999999999998887666655543 4588999999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC------
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE------ 244 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~------ 244 (338)
++++++.|+.|++||++.... ...+. ....+.+++|+|++.++++++ ++.+++|+...+.....+...
T Consensus 210 ~l~s~~~dg~i~iwd~~~~~~----~~~~~-~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLAAKKA----MYTLS-AQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp EEEEEETTCEEEEEETTTTEE----EEEEE-CCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCG
T ss_pred EEEEEeCCCeEEEEECCCCcE----EEEec-CCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCcccccccc
Confidence 999999999999999876421 12222 346799999999998877665 567999998766554443322
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
.+...+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 12356789999999999999999999999998764
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-36 Score=277.95 Aligned_cols=284 Identities=12% Similarity=0.137 Sum_probs=227.3
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
.+..| ..+....|+|++++|++|+.|+.|++||+.+++....+..+...+.+++|++++..++.++ .++.+++
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~d~~i~i 165 (420)
T 3vl1_A 93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS------QDMQLKI 165 (420)
T ss_dssp TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE------TTSEEEE
T ss_pred EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe------CCCeEEE
Confidence 34444 4455567899999999999999999999999988777667788899999988776665443 3489999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC----------------------
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---------------------- 159 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---------------------- 159 (338)
|++.+++.+..+.+|...|++++|+|++++|++|+.|++|++||++++++...+..+.
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 166 WSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp EETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred EeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 9999999999999999999999999999999999999999999999988876665421
Q ss_pred ----ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccC
Q 019603 160 ----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYG 234 (338)
Q Consensus 160 ----~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~ 234 (338)
...+.|+|++..+++++.||.|++||++.... ......++...+.++.|+|+++ ++++++.|+.|++||+.+
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 322 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence 11244678999999999999999999876431 1223345778899999999999 999999999999999987
Q ss_pred Cee-EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC---------CeEeEeeCCCCceEEEEEcCCCc--
Q 019603 235 GEK-RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR---------NEVACWNGNIGVVACLKWAPRRA-- 302 (338)
Q Consensus 235 ~~~-~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~---------~~~~~~~~h~~~v~~l~~~p~~~-- 302 (338)
++. ...+..+ +...+..+ +.+++++|++++.||.|++|++... .....+.+|.+.|.+++|+|++.
T Consensus 323 ~~~~~~~~~~~-~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 400 (420)
T 3vl1_A 323 PECPVGEFLIN-EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN 400 (420)
T ss_dssp TTSCSEEEEES-TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred CcCchhhhhcc-CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence 754 3333332 33456666 5568899999999999999999863 22335668899999999999999
Q ss_pred --eEEeec-ceEEEeeeC
Q 019603 303 --MFVAAS-SVLSFWIPN 317 (338)
Q Consensus 303 --~l~s~s-~~~~iw~~~ 317 (338)
++++|+ +.+.+|...
T Consensus 401 g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 401 GEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CEEEEEETTTEEEEEESC
T ss_pred ceEEEEcCCceEEEEecc
Confidence 666665 568889653
No 45
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-35 Score=261.79 Aligned_cols=246 Identities=14% Similarity=0.171 Sum_probs=210.0
Q ss_pred EeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeE
Q 019603 62 IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSV 141 (338)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I 141 (338)
.+++.+|...+.+++|++++..++.++ .++++++|++.+++.+..+.+|...|.++.|+|++++|++|+.|++|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~------~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTL------YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEE------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEc------CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 456677778899999998877766543 34899999999999999999999999999999999999999999999
Q ss_pred EEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC-CCCEE
Q 019603 142 RIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSM 218 (338)
Q Consensus 142 ~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~i 218 (338)
++||++++++...+..+.. ..++|+|++.++++++.|+.|++||++... .......+|...|.++.|+| ++..+
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhhcccCCcEEEEEECCCCCCEE
Confidence 9999999998877776654 458899999999999999999999987532 11234568889999999999 57899
Q ss_pred EEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC--CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEE
Q 019603 219 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 296 (338)
Q Consensus 219 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~--~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~ 296 (338)
++++.|+.|++||+..+.....+. ..+...+..+.|+| ++++|++|+.|++|++||+.+++++..+.+|.+.|.+++
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~ 235 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence 999999999999987665443332 23445677888876 788999999999999999999999999999999999999
Q ss_pred EcCCCceEEeec--ceEEEeeeC
Q 019603 297 WAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 297 ~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
|+|++++|++++ +++++|...
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETT
T ss_pred ECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999997 579999755
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-37 Score=280.32 Aligned_cols=282 Identities=16% Similarity=0.227 Sum_probs=231.2
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC----CeeEeEEeecccCeeeEEEeec-CCeeEEecCccCCCCCcee
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS----AKLIKTTYHKKHGADCVCFTHH-PSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i 99 (338)
.|.+.|++++|+|++++|++|+.|+.|++||+.+ .+.+..+..+...+.+++|+++ +..++.+ +.++.+
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~------~~dg~v 138 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG------GNNGEI 138 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEE------CSSSCE
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEE------cCCCeE
Confidence 6999999999999999999999999999999987 3466677778888999999887 4444443 235889
Q ss_pred EEEEccCCe------EE---EeecCCccceEEEEEcCC-CCEEEEEECCCeEEEEECCCcceeeeeeec------C--cc
Q 019603 100 RYLSMYDNR------IL---RYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGILRLR------G--RP 161 (338)
Q Consensus 100 ~~~~~~~~~------~~---~~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~------~--~~ 161 (338)
++|++.+++ .. ..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++++++...+..+ . ..
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence 999998876 22 234789999999999999 789999999999999999998887666654 2 34
Q ss_pred EEEEcCCC-CEEEEEEcCC---eEEEEeCCCCCCCCCeeEEec-CCCCceEEEEEcC-CCCEEEEEecCCcEEEEEccCC
Q 019603 162 TVAFDQQG-LVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 162 ~~~~~~~~-~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~v~~sp-~~~~i~~~~~d~~i~i~~~~~~ 235 (338)
.+.|+|++ .++++++.|+ .|++||++.... +. .... +|...|.++.|+| +++++++++.|+.|++||..++
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PL--QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CS--BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-Cc--EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 58899997 6899999998 999999986432 11 1233 6788999999999 8999999999999999999888
Q ss_pred eeEEEeeeCCCCCCCeeEEECCCC-CEEEEEcCCCcEEEEECCCCCeEeEeeC---------------------------
Q 019603 236 EKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNG--------------------------- 287 (338)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~--------------------------- 287 (338)
+....+. .|...+.+++|+|++ .+|++++.||.|++||+.+.+.......
T Consensus 296 ~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (416)
T 2pm9_A 296 EQLSQFP--ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSV 373 (416)
T ss_dssp CEEEEEE--CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCS
T ss_pred ccceeec--CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccc
Confidence 7665544 566789999999999 8999999999999999987654332211
Q ss_pred --------CCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 288 --------NIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 288 --------h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
|...+.+++|+|+++++++++ +.++||.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 374 FHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp SCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 677888999999999999997 579999654
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.9e-35 Score=272.49 Aligned_cols=283 Identities=16% Similarity=0.322 Sum_probs=234.8
Q ss_pred cceeeccCCcce-eEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 19 MAAIFSDFGGKI-NSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 19 ~~~~~~~h~~~V-~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
+...+.+|.+.| .++.| ++++|++|+.|++|++||+.+++.+..+.+|...+.++.|+++. .++.+ +.++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~------s~dg 183 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSG------STDR 183 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEE------ETTS
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEE------eCCC
Confidence 456889999885 55555 57899999999999999999999998888888889999987655 33332 3358
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEc--CCCCEEEEEECCCeEEEEECCCccee-----------------------
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMS--PVNDSFMSGSLDHSVRIWDLRVNACQ----------------------- 152 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~--~~~~~l~Sgs~D~~I~iWd~~~~~~~----------------------- 152 (338)
++++|++.+++.+..+.+|...|.+++|+ ++++++++|+.|++|++||++.+...
T Consensus 184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 99999999999999999999999999998 56789999999999999999876532
Q ss_pred eeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEc
Q 019603 153 GILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~ 232 (338)
..+..+.....++++++..+++++.|+.|++||+++... .....+|...|.++.|+|+++++++++.|+.|++||.
T Consensus 264 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 264 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC----LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339 (464)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred EEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 223334445567788999999999999999999875321 2344578889999999999999999999999999999
Q ss_pred cCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-ceE
Q 019603 233 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVL 311 (338)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~ 311 (338)
.+++....+ ..|...+..++|+ +++|++|+.||.|++||+.+++....+. |...+..++|+|++.++++++ +.+
T Consensus 340 ~~~~~~~~~--~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~dg~i 414 (464)
T 3v7d_B 340 ENGELMYTL--QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF 414 (464)
T ss_dssp TTTEEEEEE--CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEETTEE
T ss_pred CCCcEEEEE--eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEecCCeE
Confidence 988766544 5667788899997 5899999999999999999887766553 667888899999999999987 679
Q ss_pred EEeeeCCC
Q 019603 312 SFWIPNPS 319 (338)
Q Consensus 312 ~iw~~~~~ 319 (338)
++|.....
T Consensus 415 ~iwd~~~g 422 (464)
T 3v7d_B 415 NIYNLRSG 422 (464)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99976644
No 48
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.8e-36 Score=270.65 Aligned_cols=249 Identities=14% Similarity=0.226 Sum_probs=196.0
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEe----EEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIK----TTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
......+|.+.|++++|+|++. +++++.|++|+|||+.+++.+. ....|...+.+++|++++..++.++
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs------ 158 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG------ 158 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE------
T ss_pred EecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe------
Confidence 4455668999999999999875 5568899999999998876532 2234566788899988777666543
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecC----ccEEEEcCC-
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQ- 168 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~----~~~~~~~~~- 168 (338)
.++.|++||+.+++.+..+++|...|++++|+|+++ ++++++.|++|++||++++++...+.... ...++|+|+
T Consensus 159 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 159 KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc
Confidence 348899999999999999999999999999999875 78999999999999999887765544322 235789987
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCC-CEEEEEecCCcEEEEEccCCeeEEEeeeCCCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
+.++++++.|+.|++||++.... .....++...|.+++|+|++ +++++++.|+.|++||..+++... ..+|.
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~---~~~H~ 311 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR---DLSHR 311 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE---ECCCS
T ss_pred cceEEEeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE---ECCCC
Confidence 46889999999999999986432 23445788899999999987 468889999999999998886543 44788
Q ss_pred CCCeeEEECC-CCCEEEEEcCCCcEEEEECCCCCe
Q 019603 248 NTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 248 ~~~~~~~fs~-~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
..|++++|+| ++++|+|||.||+|++|++.+...
T Consensus 312 ~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 8999999998 799999999999999999976433
No 49
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=264.05 Aligned_cols=258 Identities=12% Similarity=0.187 Sum_probs=201.0
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe--eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK--LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
..+|.+.|++++|+|+|++|++|+.|+++++||+..+. ++..+.+|...+.+++|++++..++.++ .+++++
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s------~D~~v~ 130 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS------RDKSVW 130 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE------CCCeEE
Confidence 36899999999999999999999999999999998764 5666777888899999988776666543 348999
Q ss_pred EEEccCC---eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce--eeeeeecCc--cEEEEcCCCCEEE
Q 019603 101 YLSMYDN---RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC--QGILRLRGR--PTVAFDQQGLVFA 173 (338)
Q Consensus 101 ~~~~~~~---~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~ 173 (338)
+|++.++ +++..+.+|...|.+++|+|++++|++|+.|++|++||++.++. ...+..+.. ..++|+|+|.+++
T Consensus 131 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 9999765 45677899999999999999999999999999999999987653 334444433 3588999999999
Q ss_pred EEEcCCeEEEEeCCCCCCCC-C-----------eeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee----
Q 019603 174 VAMEAGAIKLFDSRSYDKGP-F-----------DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---- 237 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~-~-----------~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~---- 237 (338)
+++.|+.|++||.+...... . ...+...|...|.++.|+|++..+++++.|+.|++|+...+..
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence 99999999999964321110 0 0111223778899999999999999999999999999765421
Q ss_pred E---EEeeeCCCCCCCeeEEECCCC-CEEEEEcCCCcEEEEECCCCCeEeEee
Q 019603 238 R---CGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 238 ~---~~~~~~~~~~~~~~~~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~~~~~~ 286 (338)
. ......+|...|.+++|+|++ .+|+|||.||+|++|++.+++....+.
T Consensus 291 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 291 TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred eEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 1 112234677889999999998 499999999999999999887665543
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-34 Score=266.08 Aligned_cols=276 Identities=18% Similarity=0.235 Sum_probs=224.0
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeec--ccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHK--KHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
.++.|+|+++ ++|++| .|++|+|||..+++++..+..+ ...|.+++|++++..+++++ .++++++|++.+
T Consensus 107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs------~Dg~v~iWd~~~ 178 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT------SSAEVQLWDVQQ 178 (420)
T ss_dssp TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE------TTSCEEEEETTT
T ss_pred cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE------CCCeEEEEEcCC
Confidence 3577999975 466655 5999999999999987766544 44588899988777666543 358999999999
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-eeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEE
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKL 183 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i 183 (338)
++.+..+.+|...|.+++++ +..+++|+.|+.+++||.+.... ...+..+.. ..+.+.+++..+++++.|+.+++
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 99999999999999998875 57999999999999999876543 344444433 34778999999999999999999
Q ss_pred EeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEE-EEE--ecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC
Q 019603 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-LLT--TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260 (338)
Q Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i-~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 260 (338)
||.+..............+...|.++.|+|++..+ +++ +.|+.|++||..++.....+... ..+..+.|+|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~~~ 333 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYK 333 (420)
T ss_dssp EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETTTT
T ss_pred EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc---cceeeeeecCCCC
Confidence 99876543333233445778899999999977644 433 36899999999999876655432 4688899999999
Q ss_pred EEEEEc--CCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 261 YVVSGS--GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 261 ~l~sgs--~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
.+++++ .|+.|+|||+.+++++..+.+|.+.|++|+|+|++++||+|+ ++|+||...
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 998765 799999999999999999999999999999999999999997 689999764
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-37 Score=278.91 Aligned_cols=289 Identities=12% Similarity=0.153 Sum_probs=217.7
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC--eeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA--KLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
....+..|.++|++++|+|++++|++|+.|+.|++||+.++ +.+..+..|...+.+++|++++..++.++ .+
T Consensus 3 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~d 76 (377)
T 3dwl_C 3 TSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS------QD 76 (377)
T ss_dssp CEEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE------TT
T ss_pred cceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe------CC
Confidence 34566678899999999999999999999999999999988 66777777888899999988876666543 34
Q ss_pred ceeEEEEccCCe---EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce---eeeeee-cC--ccEEEEcC
Q 019603 97 ESLRYLSMYDNR---ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC---QGILRL-RG--RPTVAFDQ 167 (338)
Q Consensus 97 ~~i~~~~~~~~~---~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~---~~~~~~-~~--~~~~~~~~ 167 (338)
+.+++|++.+++ ....+.+|...|++++|+|++++|++|+.|++|++||++.++. ...+.. +. ...++|+|
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 889999999877 6777889999999999999999999999999999999988763 444443 33 34588999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCC------------CCee--EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKG------------PFDT--FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 233 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~------------~~~~--~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~ 233 (338)
++.++++++.|+.+++||++..... +... ... +|...|.++.|+|+++++++++.|+.|++||..
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 9999999999999999998632210 0111 112 678889999999999999999999999999998
Q ss_pred CCeeEE--EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC--eE---------------------------
Q 019603 234 GGEKRC--GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN--EV--------------------------- 282 (338)
Q Consensus 234 ~~~~~~--~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~--~~--------------------------- 282 (338)
+++... ...+..|...+.+++|+|++++|++|+.|+.+ +|+..... ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (377)
T 3dwl_C 236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGP 314 (377)
T ss_dssp STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---
T ss_pred CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccc
Confidence 876511 23445667789999999999999999877666 66664211 00
Q ss_pred -------eEe----------------eCCCCceEEEEEcCCCc----eEEeec--ceEEEee
Q 019603 283 -------ACW----------------NGNIGVVACLKWAPRRA----MFVAAS--SVLSFWI 315 (338)
Q Consensus 283 -------~~~----------------~~h~~~v~~l~~~p~~~----~l~s~s--~~~~iw~ 315 (338)
..+ ..|.+.|++|++.+... .|++++ +.+++|.
T Consensus 315 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 111 13999999999876543 588886 6799995
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=277.69 Aligned_cols=282 Identities=16% Similarity=0.224 Sum_probs=228.2
Q ss_pred CCcceeEEEeecCCC-EEEEe----------eCCCcEEEEEcCCCe---eEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 26 FGGKINSLDFHRKDD-LLVTA----------SDDDSVRLYDIVSAK---LIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 26 h~~~V~~l~~s~~~~-~l~s~----------s~D~~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
+-..|++++|+|+|+ +|++| +.|+.|++||+.++. .+.. ..+...+.+++|++++..++.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--- 86 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGAL--- 86 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEE---
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEc---
Confidence 446789999999987 99999 899999999998875 3322 23556788899988777666543
Q ss_pred CCCCCceeEEEEccC----CeEEEeecCCccceEEEEEcCC-CCEEEEEECCCeEEEEECCCcc------eeeee---ee
Q 019603 92 LDSTGESLRYLSMYD----NRILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNA------CQGIL---RL 157 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~----~~~~~~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~~------~~~~~---~~ 157 (338)
.++.+++|++.+ .+.+..+.+|...|++++|+|+ +++|++|+.|++|++||+++++ ....+ ..
T Consensus 87 ---~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 87 ---DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp ---SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred ---cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence 247899999987 4588889999999999999998 8899999999999999998776 22221 12
Q ss_pred c--CccEEEEcCC-CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC------CCceEEEEEcCCC-CEEEEEecCC--
Q 019603 158 R--GRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD------TAEVCDIKFSNDG-KSMLLTTTNN-- 225 (338)
Q Consensus 158 ~--~~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~v~~sp~~-~~i~~~~~d~-- 225 (338)
+ ....+.|+|+ +.++++++.|+.|++||++.... ......+ ...+.++.|+|++ .++++++.++
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE----EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc----ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 2 2346899998 78999999999999999876321 1222222 6789999999997 5788888888
Q ss_pred -cEEEEEccCCeeEEEeeeC-CCCCCCeeEEECC-CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCC-
Q 019603 226 -NIYVLDAYGGEKRCGFSLE-PSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR- 301 (338)
Q Consensus 226 -~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~fs~-~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~- 301 (338)
.|++||..++... ..... .|...+.+++|+| ++++|++++.||.|++||+.+++++..+.+|.+.|++++|+|++
T Consensus 240 ~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 318 (416)
T 2pm9_A 240 PSILIWDLRNANTP-LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAP 318 (416)
T ss_dssp CCCCEEETTSTTSC-SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCT
T ss_pred ceEEEEeCCCCCCC-cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCC
Confidence 9999999875321 12334 5777899999999 99999999999999999999999999999999999999999998
Q ss_pred ceEEeec--ceEEEeeeCCC
Q 019603 302 AMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 302 ~~l~s~s--~~~~iw~~~~~ 319 (338)
.++++++ +.+++|.....
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp TEEEECCSSSEEEEEESCCC
T ss_pred CEEEEEecCCcEEEEEccCC
Confidence 7899887 57999986643
No 53
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-35 Score=266.57 Aligned_cols=248 Identities=19% Similarity=0.306 Sum_probs=207.0
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC------eeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA------KLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
.....+..|...|.+++|+|+|.+|++|+.|+++++|++... .....+..|...+.+++|+++...++.++
T Consensus 97 ~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s--- 173 (354)
T 2pbi_B 97 NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS--- 173 (354)
T ss_dssp CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE---
T ss_pred CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe---
Confidence 455667789999999999999999999999999999998643 22345566777788888887776666543
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcC
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQ 167 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~ 167 (338)
.++++++||+.+++++..+.+|...|.++.|+|+ +++|+||+.|++|++||++++++...+..+.. ..++|+|
T Consensus 174 ---~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 174 ---GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP 250 (354)
T ss_dssp ---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred ---CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC
Confidence 3589999999999999999999999999999884 67999999999999999999998877766554 4588999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
++..+++++.|+.+++||++.... ...+....+...+.++.|+|+++++++++.|+.|++||..+++... .+.+|.
T Consensus 251 ~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~--~l~~h~ 326 (354)
T 2pbi_B 251 SGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS--ILFGHE 326 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE--EECCCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE--EEECCC
Confidence 999999999999999999886321 1111112234568899999999999999999999999998887654 445777
Q ss_pred CCCeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 248 NTNTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
..+++++|+|+|++|+||+.||+|+||+
T Consensus 327 ~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 327 NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 8999999999999999999999999996
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=266.56 Aligned_cols=296 Identities=19% Similarity=0.241 Sum_probs=230.9
Q ss_pred ccceeeccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeEEe-------------ecccCeeeEEEeecCC-
Q 019603 18 AMAAIFSDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKTTY-------------HKKHGADCVCFTHHPS- 82 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~- 82 (338)
.....+.+|.+.|++++|+| ++++|++|+.|+.|++||+.++....... .+...+.+++|++...
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 45567889999999999999 99999999999999999998876544332 2566788888887433
Q ss_pred eeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCC---CEEEEEECCCeEEEEECCCcceeeeeeecC
Q 019603 83 SVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN---DSFMSGSLDHSVRIWDLRVNACQGILRLRG 159 (338)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~---~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~ 159 (338)
.++.+ +.++.+++|++.+++....+. |...+.++.+.|.+ .++++|+.|+.|++||++++++...+..+.
T Consensus 114 ~l~s~------~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 114 MFTSS------SFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp CEEEE------ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred EEEEE------eCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 44433 234899999999999888776 88899999999854 489999999999999999988777776554
Q ss_pred c--cEEEEcCCCC-EEEEEEcCCeEEEEeCCCCCCCCCeeE-------------EecCCCCceEEEEEcCCCCEEEEEec
Q 019603 160 R--PTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTF-------------LVGGDTAEVCDIKFSNDGKSMLLTTT 223 (338)
Q Consensus 160 ~--~~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~~~~~i~~v~~sp~~~~i~~~~~ 223 (338)
. ..+.|+|++. ++++++.||.|++||++.... ....+ ...+|...|.++.|+|+++++++++.
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 4 4588999988 689999999999999876431 11110 11356788999999999999999999
Q ss_pred CCcEEEEEccCCeeEEEeeeCCCC---CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCC
Q 019603 224 NNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 224 d~~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
|+.+++||+.+++....+...... ...........+..++.++.|+.|++||+.+++.+..+.+|.+.|++++|+|+
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 999999999887654333222111 11222223344566777788999999999999999999999999999999999
Q ss_pred CceEEeec--ceEEEeeeCCCCC
Q 019603 301 RAMFVAAS--SVLSFWIPNPSSN 321 (338)
Q Consensus 301 ~~~l~s~s--~~~~iw~~~~~~~ 321 (338)
+++|++++ +.+++|.......
T Consensus 346 ~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 346 FQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp TTEEEEEETTSCEEEEEECC---
T ss_pred CCEEEEECCCCeEEEEeCCCCCc
Confidence 99999997 5799998775433
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.2e-36 Score=275.89 Aligned_cols=279 Identities=16% Similarity=0.196 Sum_probs=220.0
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR 108 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 108 (338)
.+++++|+|+|++|++++.|+.|++||+.+++....+..+ .......+++++..+++++ .++.+++|++.+++
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGT------TEGDIKVLDSNFNL 130 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEE------TTSCEEEECTTSCE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEE------CCCCEEEEeCCCcc
Confidence 3458999999999999999999999999887655433333 2233345566666555443 34789999999999
Q ss_pred EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeC
Q 019603 109 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 109 ~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~ 186 (338)
....+.+|.+.|++++|+|++++|++|+.|++|++||++++++...+..+.. ..+.|+|++..+++++.|+.+++||+
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 9999999999999999999999999999999999999999888777765544 45789999999999999999999998
Q ss_pred CCCCCCCCeeEEe-cCCC---------------------CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 187 RSYDKGPFDTFLV-GGDT---------------------AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 187 ~~~~~~~~~~~~~-~~~~---------------------~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
+.... ...+.. ..+. ..+.++.|+|+++++++++.|+.|++||+.+++....+. .
T Consensus 211 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 287 (420)
T 3vl1_A 211 GTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-S 287 (420)
T ss_dssp TTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-C
T ss_pred CCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-c
Confidence 75421 111110 0122 344455668999999999999999999998887654432 3
Q ss_pred CCCCCCeeEEECCCCC-EEEEEcCCCcEEEEECCCCCe-EeEeeC-CCCceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 245 PSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNE-VACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~~~~-~~~~~~-h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
.|...+.+++|+|+++ +|++|+.||.|++||+.+++. +..+.+ |...|.++.| |++.+|++++ +.+++|....
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 4567899999999999 999999999999999998754 677776 6778888855 5678888887 5799998765
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-35 Score=266.71 Aligned_cols=283 Identities=17% Similarity=0.210 Sum_probs=226.2
Q ss_pred ccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEee-cccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 24 SDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYH-KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
.+|...+....+++++..+++++.|++|++||+.+++....... +...+.+++|++++..+++++ .++.+++|
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~------~dg~i~iw 161 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL------GNGLVDIY 161 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE------TTSCEEEE
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC------CCCeEEEE
Confidence 47776654444444456788999999999999999988776655 456788899988776665543 24789999
Q ss_pred EccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC-cceeeeeeecCc--cEEEEcCCCCEEEEEEcCC
Q 019603 103 SMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGILRLRGR--PTVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 103 ~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg 179 (338)
++.+++.+..+.+|...|.+++|+ +++|++|+.|+.|++||++. +.....+..+.. ..+.|+|++..+++++.|+
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 999999999999999999999994 57999999999999999984 445555554443 4578999999999999999
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe---cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
.|++||++... ......+|...|.++.|+|++..+++++ .|+.+++||..+++....+. +...+.+++|+
T Consensus 240 ~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s 312 (401)
T 4aez_A 240 VVQIWDARSSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWS 312 (401)
T ss_dssp CEEEEETTCSS----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEEC
T ss_pred eEEEccCCCCC----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEEC
Confidence 99999988632 2334457888999999999876555543 59999999999887766554 34579999999
Q ss_pred CCCCEEEE--EcCCCcEEEEECCCCCeEe--EeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCCCC
Q 019603 257 PDGQYVVS--GSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 321 (338)
Q Consensus 257 ~~~~~l~s--gs~Dg~i~vWd~~~~~~~~--~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~~~ 321 (338)
|++++|++ |+.||.|++||+.+++... .+.+|.+.|.+++|+|++++|++++ +.+++|.......
T Consensus 313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 99999999 5589999999999865544 4679999999999999999999987 5799998765433
No 57
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=262.05 Aligned_cols=254 Identities=13% Similarity=0.238 Sum_probs=192.8
Q ss_pred ccceee-cc-CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC-------CeeEeEEeecccCeeeEEEeecCCeeEEec
Q 019603 18 AMAAIF-SD-FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS-------AKLIKTTYHKKHGADCVCFTHHPSSVICST 88 (338)
Q Consensus 18 ~~~~~~-~~-h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
.....+ .+ |.+.|++++|+|++++|++|+.|++|+|||+.. .+++..+.+|...+.+++|++++..++.++
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 344555 44 999999999999999999999999999999853 345566677778899999988877666543
Q ss_pred CccCCCCCceeEEEEccC----CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeeeeeecCcc-
Q 019603 89 KYNLDSTGESLRYLSMYD----NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRP- 161 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~----~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~--~~~~~~~~~~~~- 161 (338)
.++++++|++.. .+++..+.+|...|++++|+|++++|+|||.|++|++||++.+ ++...+..+...
T Consensus 127 ------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v 200 (330)
T 2hes_X 127 ------RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV 200 (330)
T ss_dssp ------TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ------CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcE
Confidence 358999999943 3567889999999999999999999999999999999998766 455555555443
Q ss_pred -EEEEcCC--CCEEEEEEcCCeEEEEeCCCCCCCCCe----eEEe-cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc
Q 019603 162 -TVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFD----TFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 233 (338)
Q Consensus 162 -~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~----~~~~-~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~ 233 (338)
.+.|+|+ +..+++++.|+.|++||++........ ...+ ..|...|.++.|+|++ ++++++.|+.|++|+..
T Consensus 201 ~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 201 WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred EEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 4788998 678999999999999998643211110 1112 2378899999999765 79999999999999988
Q ss_pred CCeeEEEe-eeCCCCC-CCeeEEECC--CCCEEEEEcCCCcEEEEECCC
Q 019603 234 GGEKRCGF-SLEPSPN-TNTEATFTP--DGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 234 ~~~~~~~~-~~~~~~~-~~~~~~fs~--~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
+++..... ....|.. .+..++|+| ++++|+||+.||+|++||+.+
T Consensus 280 ~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 280 DGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 77532222 2345655 789999999 789999999999999999865
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-34 Score=266.67 Aligned_cols=283 Identities=16% Similarity=0.296 Sum_probs=237.7
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
..++...+.+|.+.|+++.|+ +++|++|+.|++|++||+.+++.+..+..+...+.++.+ ++..++.++ .
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s------~ 217 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGS------R 217 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEE------T
T ss_pred CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe--cCCEEEEEe------C
Confidence 455677889999999999998 679999999999999999999998888877777877776 455555432 3
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVA 175 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
++.+++|++.+++.+..+.+|...|.++.+ +++++++|+.|+.|++||++++++...+..+.....++..++..++++
T Consensus 218 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 295 (445)
T 2ovr_B 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSG 295 (445)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEE
T ss_pred CCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEE
Confidence 589999999999999999999999999999 678999999999999999999988877776666665555588999999
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC-CCCCCCeeEE
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-PSPNTNTEAT 254 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 254 (338)
+.|+.|++||+++... .....+|...+.++.+ +++++++++.|+.|++||..+++....+... .|...+++++
T Consensus 296 ~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 369 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNC----IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369 (445)
T ss_dssp ETTSCEEEEETTTCCE----EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred eCCCeEEEEECCCCCE----EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE
Confidence 9999999999876432 2334567778887776 5679999999999999999888877666543 3667788888
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCeEeEe-----eCCCCceEEEEEcCCCceEEeec--ce----EEEeeeCC
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNINTRNEVACW-----NGNIGVVACLKWAPRRAMFVAAS--SV----LSFWIPNP 318 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~l~s~s--~~----~~iw~~~~ 318 (338)
|+ +++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.++|+++ ++ +.+|...+
T Consensus 370 ~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 370 FN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 85 689999999999999999999998888 47889999999999999999987 33 77887654
No 59
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.6e-35 Score=260.51 Aligned_cols=263 Identities=11% Similarity=0.181 Sum_probs=215.1
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC----eeEeEEeecccCeeeEEEeec--CCeeEEecCccCC
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA----KLIKTTYHKKHGADCVCFTHH--PSSVICSTKYNLD 93 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 93 (338)
...+.+|.+.|++++|+|++++|++|+.|++|++||+.++ +.+..+..+...+.+++|++. +..+++++
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~----- 78 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS----- 78 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE-----
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc-----
Confidence 4567899999999999999999999999999999999876 355566677788999999874 55555432
Q ss_pred CCCceeEEEEccCC---------eEEEeecCCccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcceeeeeeecCccE
Q 019603 94 STGESLRYLSMYDN---------RILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT 162 (338)
Q Consensus 94 ~~~~~i~~~~~~~~---------~~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~ 162 (338)
.++.+++|++.++ +.+..+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++....+.....
T Consensus 79 -~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-- 155 (351)
T 3f3f_A 79 -YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE-- 155 (351)
T ss_dssp -TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE--
T ss_pred -CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc--
Confidence 3489999999876 668888999999999999999 99999999999999999988776543332110
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC---CCEEEEEecCCcEEEEEccCCeeEE
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRC 239 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---~~~i~~~~~d~~i~i~~~~~~~~~~ 239 (338)
+.... .....+...+.++.|+|+ +.++++++.++.+.+|+...+....
T Consensus 156 ------------------~~~~~-----------~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 156 ------------------MKVLS-----------IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp ------------------EESCS-----------CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred ------------------ccccc-----------cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence 00000 001245667899999997 8899999999999888877776655
Q ss_pred EeeeCCCCCCCeeEEECCCC----CEEEEEcCCCcEEEEECCCC------------------------------------
Q 019603 240 GFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTR------------------------------------ 279 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~fs~~~----~~l~sgs~Dg~i~vWd~~~~------------------------------------ 279 (338)
......|...+.+++|+|++ ++|++|+.||.|++||+.++
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 66677788899999999998 89999999999999999865
Q ss_pred ----------CeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCC
Q 019603 280 ----------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 280 ----------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~ 319 (338)
+.+..+.+|.+.|++++|+|++++|++++ +.+++|.....
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 56777889999999999999999999997 57999987643
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-35 Score=264.71 Aligned_cols=255 Identities=15% Similarity=0.186 Sum_probs=208.1
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcC--CCeeEeEEeecccCeeeEEEeec--CCeeEEecCccCCC
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIV--SAKLIKTTYHKKHGADCVCFTHH--PSSVICSTKYNLDS 94 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 94 (338)
++..+.+|.+.|++++|+|++++|++|+.|++|++||+. +++.+..+..|...+.+++|++. +..+++++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~------ 76 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS------ 76 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE------
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec------
Confidence 567889999999999999999999999999999999998 55666677777788999999766 45554432
Q ss_pred CCceeEEEEccCCe--EEEeecCCccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcceeeeee--ecC--ccEEEEc
Q 019603 95 TGESLRYLSMYDNR--ILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILR--LRG--RPTVAFD 166 (338)
Q Consensus 95 ~~~~i~~~~~~~~~--~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~--~~~~~~~ 166 (338)
.++.+++|++.+++ .+..+.+|...|.+++|+|+ +++|++++.|+.|++||++.+.....+. .+. ...+.|+
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence 34889999999987 77888999999999999999 8999999999999999998875433322 232 2457888
Q ss_pred C-------------CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC---CCEEEEEecCCcEEEE
Q 019603 167 Q-------------QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVL 230 (338)
Q Consensus 167 ~-------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---~~~i~~~~~d~~i~i~ 230 (338)
| ++..+++++.|+.|++||++.............+|...|.++.|+|+ ++++++++.|+.|++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 8 68999999999999999987643221122345678889999999999 8999999999999999
Q ss_pred EccCCe---eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 231 DAYGGE---KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
+...+. ....+....+...+.+++|+|++++|++++.||.|++|++...
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 998764 2233344456778999999999999999999999999999854
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.6e-35 Score=262.01 Aligned_cols=249 Identities=13% Similarity=0.233 Sum_probs=199.2
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
+...+.+|.+.|++++|+|++.+|+||+.|++|++||+.+++.+..+..|...+.+++|++++..++.++ .+++
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~------~d~~ 141 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG------AERE 141 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE------TTSC
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc------CCCE
Confidence 4567899999999999999999999999999999999999999888888888999999998877766543 3489
Q ss_pred eEEEEccCCeEEEe--ecCCccceEEEEEcCCC----------CEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEE
Q 019603 99 LRYLSMYDNRILRY--FKGHKERVISLCMSPVN----------DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVA 164 (338)
Q Consensus 99 i~~~~~~~~~~~~~--~~~H~~~V~~l~~~~~~----------~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~ 164 (338)
+++|++........ ..+|...|.++.|+|++ .+|++|+.|++|++||. ..+....+..+.. ..++
T Consensus 142 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 142 IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLS 220 (343)
T ss_dssp EEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEE
T ss_pred EEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEE
Confidence 99999974433222 23799999999999987 68999999999999995 4444445554443 4588
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
|+|+|.++++++.|+.|++||++.... +...+ .+...|.+++|+|++.+++ ++.|+.+++|++.+++......+.
T Consensus 221 ~s~~g~~l~sgs~dg~v~iwd~~~~~~-~~~~~---~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~ 295 (343)
T 2xzm_R 221 ISPNGKYIATGGKDKKLLIWDILNLTY-PQREF---DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIE 295 (343)
T ss_dssp ECTTSSEEEEEETTCEEEEEESSCCSS-CSEEE---ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcc-cceee---cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEee
Confidence 999999999999999999999854322 12121 1345699999999988665 567889999998776543322222
Q ss_pred -----------CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 245 -----------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 245 -----------~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
+|...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 296 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 45667899999999999999999999999998754
No 62
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=250.57 Aligned_cols=275 Identities=18% Similarity=0.242 Sum_probs=219.8
Q ss_pred eeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecc--cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKK--HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 30 V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
++.|+||+++ +|++ +.|++|+|||++++++++.+..+. ..+.+++|++++..++.++ .++++++|++.++
T Consensus 28 ~~~l~WS~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs------~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT------SSAEVQLWDVQQQ 99 (318)
T ss_dssp CBCEEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE------TTSEEEEEETTTT
T ss_pred ceEEEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE------CCCcEEEeecCCc
Confidence 5789999876 5555 469999999999999888766544 4578888888777666543 3589999999999
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-eeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEE
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~ 184 (338)
+.+..+.+|...+.++.+. +..+++|+.++.+++|+...... ...+..+.. ..+.+.+++..+++++.|+.|++|
T Consensus 100 ~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 9999999999999876654 67999999999999999876643 334443333 347789999999999999999999
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEE---EEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML---LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~---~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
|+++.............+...+..+.++|++..++ +++.++.|++|+.......... .+...+..+.|+|++++
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPHYKE 254 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEEETTTTE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc---cceeeeeeeeecccccc
Confidence 99875543332334456677899999999876543 3456789999998877654433 33456888999999999
Q ss_pred EEEEc--CCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 262 VVSGS--GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 262 l~sgs--~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+++++ .|+.|+|||+.+++++..+.+|.+.|++|+|+|++++||+|| ++++||...
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 87754 899999999999999999999999999999999999999997 689999653
No 63
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.4e-36 Score=270.58 Aligned_cols=256 Identities=19% Similarity=0.311 Sum_probs=203.5
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe-------eEeEEeecccCeeeEEEeecCCe-eEEec
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK-------LIKTTYHKKHGADCVCFTHHPSS-VICST 88 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 88 (338)
......+.+|...|.+++|+|+|++|++|+.|+++++||+.+.. ....+.+|...+..+.|.+.... ++.+
T Consensus 98 ~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~- 176 (380)
T 3iz6_a 98 SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG- 176 (380)
T ss_dssp TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE-
T ss_pred CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE-
Confidence 44567888999999999999999999999999999999996532 22334556666777777665443 3332
Q ss_pred CccCCCCCceeEEEEccCCeEEEee-----cCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCC-cceeeeeeecC--
Q 019603 89 KYNLDSTGESLRYLSMYDNRILRYF-----KGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRV-NACQGILRLRG-- 159 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~~-----~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~-~~~~~~~~~~~-- 159 (338)
+.++++++||+.+++.+..+ .+|...|.++.|++ ++++|+||+.|++|++||++. +++...+..+.
T Consensus 177 -----s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~ 251 (380)
T 3iz6_a 177 -----SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD 251 (380)
T ss_dssp -----CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC
T ss_pred -----CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC
Confidence 34589999999999988777 68999999999977 778999999999999999984 45555555544
Q ss_pred ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe-----cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccC
Q 019603 160 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 234 (338)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~ 234 (338)
...++|+|++..+++++.|+.|++||++.... ...+.. ..+...+.+++|+|+++++++++.|+.|++||...
T Consensus 252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp CCEEEECTTSSEEEEECSSSCEEEEETTTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred eEEEEEecCCCeEEEEcCCCeEEEEECCCCcE--EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 34689999999999999999999999886431 111111 01123488999999999999999999999999988
Q ss_pred CeeEEEeee--CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 235 GEKRCGFSL--EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 235 ~~~~~~~~~--~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
++....+.. .+|...+.+++|+|+|++|+|||.||+|++|++...+
T Consensus 330 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 876554422 4677889999999999999999999999999998654
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-34 Score=299.09 Aligned_cols=288 Identities=16% Similarity=0.298 Sum_probs=246.0
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
...+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+..+..|...+.+++|++++..+++++ .++.+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~d~~v 681 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS------ADKKV 681 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe------CCCeE
Confidence 346779999999999999999999999999999999999999888888888999999998877666543 34899
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEE
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVA 175 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 175 (338)
++||+.+++.+..+.+|...|.++.|+|+ +.++++|+.|++|++||++++++...+..+.. ..+.|+|++..++++
T Consensus 682 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred EEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEE
Confidence 99999999999999999999999999995 45899999999999999999988777765554 357899999999999
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEE-----------ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFL-----------VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
+.||.|++||++.... ..... .......+.++.|+|+++.+++++ ++.+.+|+..++.....+. .
T Consensus 762 s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~-~ 837 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANE--RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH-T 837 (1249)
T ss_dssp ESSSEEEEEEGGGTEE--EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE-C
T ss_pred ECCCeEEEEeCCCCcc--cceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc-C
Confidence 9999999999875321 00000 011233678899999999888876 7899999998887665443 3
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+|...+..++|+|+++++++++.||.|++||+.++..+..+.+|.+.|.+++|+|+++.+++++ +.+++|...
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 5667899999999999999999999999999999999999999999999999999999999997 579999754
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-35 Score=304.02 Aligned_cols=296 Identities=19% Similarity=0.261 Sum_probs=243.7
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
....++..+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+..+..+...+.++.|++.....+..+. +
T Consensus 645 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg----~ 720 (1249)
T 3sfz_A 645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG----S 720 (1249)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEE----E
T ss_pred CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEE----e
Confidence 344567788999999999999999999999999999999999999999988888888999999876444333221 3
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee-----------------
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL----------------- 157 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~----------------- 157 (338)
.++.+++||+.++++...+.+|.+.|++++|+|+++++++|+.|++|++||+++++....+..
T Consensus 721 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 358899999999999999999999999999999999999999999999999987654333211
Q ss_pred ----------------------------------------cCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeE
Q 019603 158 ----------------------------------------RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF 197 (338)
Q Consensus 158 ----------------------------------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~ 197 (338)
.....+.|+|++..+++++.|+.+++||..... ...
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~----~~~ 876 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL----KVA 876 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE----EEE
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----eee
Confidence 011246788899999999999999999987532 233
Q ss_pred EecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee-----------------------------EEEeee-----
Q 019603 198 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-----------------------------RCGFSL----- 243 (338)
Q Consensus 198 ~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~-----------------------------~~~~~~----- 243 (338)
...+|...|.++.|+|+++++++++.|+.+++|+...+.. ......
T Consensus 877 ~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 4567889999999999999999999999999999642100 000000
Q ss_pred -CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 244 -EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 244 -~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
......+.+++|+|+++++++|+.||.|++||+.+++....+.+|.+.|.+++|+|+++++++++ +.+++|....
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 01234678899999999999999999999999999999999999999999999999999999997 5799997653
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=282.61 Aligned_cols=284 Identities=12% Similarity=0.099 Sum_probs=206.5
Q ss_pred eeeccCCcceeEEEeecC------CCEEEEeeCCCcEEEEEcCCCeeE-----------eEEeecccCeeeEEEeecCCe
Q 019603 21 AIFSDFGGKINSLDFHRK------DDLLVTASDDDSVRLYDIVSAKLI-----------KTTYHKKHGADCVCFTHHPSS 83 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~------~~~l~s~s~D~~i~iWd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 83 (338)
..+.+|.+.|++++|+|+ +.+|+||+.|++|+|||+.++... ..+..+...+.+++|+.. ..
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence 446778999999999997 579999999999999999866421 234455667778887643 33
Q ss_pred eEEecCccCCCCCceeEEEEccCCe-EEEeecCCccceEEE--EEcCCC-CEEEEEECCCeEEEEECCCcceeeeeeecC
Q 019603 84 VICSTKYNLDSTGESLRYLSMYDNR-ILRYFKGHKERVISL--CMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRG 159 (338)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~H~~~V~~l--~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~ 159 (338)
++++ +.+++|++||+.+++ +...+.+|.+.|+++ .|+|++ .+|+|||.|++|+|||++++++...+..+.
T Consensus 280 lasg------s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 280 VVCG------FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp EEEE------ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred EEEE------eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence 3332 345899999998763 456689999999999 578887 899999999999999999888766665432
Q ss_pred ----ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC
Q 019603 160 ----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 160 ----~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~ 235 (338)
...++|+|++..+++++.|+.|++||++.... . ..+.+|...|.+++|+|+++++++++.|++|++|+....
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~--~--~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA--V--HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC--C--EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc--c--eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 24589999999999999999999999987432 1 223468899999999999999999999999999997543
Q ss_pred eeEEEeeeC---CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC-CCCeEeEeeCCCCceEEEEEcCCCc---eEEeec
Q 019603 236 EKRCGFSLE---PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACLKWAPRRA---MFVAAS 308 (338)
Q Consensus 236 ~~~~~~~~~---~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~h~~~v~~l~~~p~~~---~l~s~s 308 (338)
....+... .+...+.+++|+|+++.+. ... ..++|+.. ++.++..+.+|.+.|++|+|||+++ .+|+|+
T Consensus 430 -~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 430 -LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp -TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred -hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence 11111000 0111356889999998653 322 34455443 4677888999999999999999965 888886
Q ss_pred --ceEEEeeeCCC
Q 019603 309 --SVLSFWIPNPS 319 (338)
Q Consensus 309 --~~~~iw~~~~~ 319 (338)
+.++||.+...
T Consensus 506 ~~g~vrlw~l~~~ 518 (524)
T 2j04_B 506 SAGLLTLEYLSLE 518 (524)
T ss_dssp TTSEEEEEECSCC
T ss_pred cCceEEEEEcccc
Confidence 57999976554
No 67
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-35 Score=290.67 Aligned_cols=293 Identities=14% Similarity=0.183 Sum_probs=216.7
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEe-----------EEeecccCeeeEEEeecCCeeEEe
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIK-----------TTYHKKHGADCVCFTHHPSSVICS 87 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
.+..+. |.+.|++++|+|++++|++|+.|++|++||+.++++.. ....|...+.+++|++.....+..
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 445553 77899999999999999999999999999999887631 112344567788887643333332
Q ss_pred cCccCCCCCceeEEEEccCCeEEEeecCC------------------ccceEEEEEcCCCCEEEEEECCCeEEEEECCCc
Q 019603 88 TKYNLDSTGESLRYLSMYDNRILRYFKGH------------------KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149 (338)
Q Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~H------------------~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~ 149 (338)
+ ..++.+ +||+.+++.++.+.+| ...|++++|+|++++|+||+.|++|++||++++
T Consensus 170 g-----~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 170 S-----YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp E-----CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred E-----eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 2 335789 9999999998888766 578999999999999999999999999998765
Q ss_pred ceeee--ee---ec-------------C--ccEE----------------------------------------------
Q 019603 150 ACQGI--LR---LR-------------G--RPTV---------------------------------------------- 163 (338)
Q Consensus 150 ~~~~~--~~---~~-------------~--~~~~---------------------------------------------- 163 (338)
+++.. +. .+ . ...+
T Consensus 244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 323 (902)
T 2oaj_A 244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEG 323 (902)
T ss_dssp CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHH
T ss_pred cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhh
Confidence 43210 00 00 0 0000
Q ss_pred --------------------------------------------------------------------------------
Q 019603 164 -------------------------------------------------------------------------------- 163 (338)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (338)
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~ 403 (902)
T 2oaj_A 324 MKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL 403 (902)
T ss_dssp HHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred hhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence
Q ss_pred --------------------------------------EEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe--c---
Q 019603 164 --------------------------------------AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV--G--- 200 (338)
Q Consensus 164 --------------------------------------~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~--- 200 (338)
+|+|++..+++|+.|++|++||+..........+.. .
T Consensus 404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~ 483 (902)
T 2oaj_A 404 ATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTL 483 (902)
T ss_dssp EEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHT
T ss_pred eeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhc
Confidence 011334466677777777777765432111111111 1
Q ss_pred --CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee-----------------------------------------
Q 019603 201 --GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK----------------------------------------- 237 (338)
Q Consensus 201 --~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~----------------------------------------- 237 (338)
+|...|.+++|+|+++++++++.|++|++|+..+++.
T Consensus 484 ~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (902)
T 2oaj_A 484 NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ 563 (902)
T ss_dssp TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence 6677899999999999999999999999999876521
Q ss_pred --EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEe-----Eee-CCCCceEEEEEc-----CCC---
Q 019603 238 --RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-----CWN-GNIGVVACLKWA-----PRR--- 301 (338)
Q Consensus 238 --~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~-----~~~-~h~~~v~~l~~~-----p~~--- 301 (338)
.+...+.+|...|++++||||| +||+|+.|++|++||+.++..+. .+. +|.+.|++|+|+ ||+
T Consensus 564 g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~ 642 (902)
T 2oaj_A 564 GFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS 642 (902)
T ss_dssp EEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred ccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence 1233456688899999999999 99999999999999998876653 343 899999999999 885
Q ss_pred ceEEeec--ceEEEeeeCCC
Q 019603 302 AMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 302 ~~l~s~s--~~~~iw~~~~~ 319 (338)
++|++|+ +++++|...|.
T Consensus 643 ~~l~sgs~D~tv~~wd~~p~ 662 (902)
T 2oaj_A 643 ILMVCGTDMGEVITYKILPA 662 (902)
T ss_dssp EEEEEEETTSEEEEEEEEEC
T ss_pred eEEEEEecCCcEEEEEEecC
Confidence 7999987 68999987544
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.6e-34 Score=263.81 Aligned_cols=283 Identities=18% Similarity=0.262 Sum_probs=228.1
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
+..+++..+.+|.+.|++++|+|++ +|++|+.|++|++||+.+++.+..+..+...+.++.+.+.+......+. +
T Consensus 150 ~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~----s 224 (464)
T 3v7d_B 150 INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG----S 224 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEE----E
T ss_pred CCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEE----c
Confidence 3445677889999999999999988 9999999999999999999998888888888999999875443222211 3
Q ss_pred CCceeEEEEccCCe-----------------------EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce
Q 019603 95 TGESLRYLSMYDNR-----------------------ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC 151 (338)
Q Consensus 95 ~~~~i~~~~~~~~~-----------------------~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~ 151 (338)
.++.+++|++.++. .+..+.+|...|.++ +++++++++|+.|++|++||++++++
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~ 302 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC 302 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 35899999998764 256788999999987 56788999999999999999999988
Q ss_pred eeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEE
Q 019603 152 QGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 229 (338)
Q Consensus 152 ~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i 229 (338)
...+..+.. ..+.++|++..+++++.|+.|++||+++.. ......+|...|.++.|+ +.++++++.|+.|++
T Consensus 303 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~v 376 (464)
T 3v7d_B 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRG 376 (464)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEE
Confidence 777765543 357899999999999999999999987642 123456788899999997 578999999999999
Q ss_pred EEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeE-eeCCCCceEEEEEcCCCceEEeec
Q 019603 230 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
||..++....... +...+..++|+|++++|++|+ ||.|++||+.+++.+.. +.+|.+.|++++|+ +..++++++
T Consensus 377 wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~ 451 (464)
T 3v7d_B 377 WDANDYSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVE 451 (464)
T ss_dssp EETTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEE
T ss_pred EECCCCceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEE
Confidence 9998876554332 334567789999999999998 89999999999999875 67889999999998 334444443
Q ss_pred --ceEEEee
Q 019603 309 --SVLSFWI 315 (338)
Q Consensus 309 --~~~~iw~ 315 (338)
+.+.+|.
T Consensus 452 ~~g~~~i~~ 460 (464)
T 3v7d_B 452 KDGQSFLEI 460 (464)
T ss_dssp ETTEEEEEE
T ss_pred eCCeEEEEE
Confidence 2344444
No 69
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.2e-34 Score=254.14 Aligned_cols=278 Identities=15% Similarity=0.158 Sum_probs=226.9
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
|.++|.+++|+|+|++++++..++.+.+|+............|...+.+++|++++..++++. ++.+++|++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-------dg~i~iw~~~ 80 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-------KGCVKVWDIS 80 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-------BSEEEEEETT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-------CCeEEEEECC
Confidence 578899999999999999998888888876655544444456777889999988776655432 4899999998
Q ss_pred CCeE---EEeec--CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce--eeeeeecCc--cEEEEcCCCCEEEEEE
Q 019603 106 DNRI---LRYFK--GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC--QGILRLRGR--PTVAFDQQGLVFAVAM 176 (338)
Q Consensus 106 ~~~~---~~~~~--~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~ 176 (338)
+++. ...+. +|...|.+++|+|++++|++++.|+.|++||++.++. ...+..+.. ..+.++|++..+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (337)
T 1gxr_A 81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160 (337)
T ss_dssp STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe
Confidence 7643 23333 8999999999999999999999999999999988763 333333333 3578999999999999
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEEC
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 256 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs 256 (338)
.|+.+++||++... ......+|...+.++.|+|+++++++++.++.+++||..+++....+. +...+.+++|+
T Consensus 161 ~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s 233 (337)
T 1gxr_A 161 SDGNIAVWDLHNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYC 233 (337)
T ss_dssp TTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEEC
T ss_pred CCCcEEEEeCCCCc----eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCceEEEEEC
Confidence 99999999987532 123345678899999999999999999999999999999887765543 44578999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 257 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 257 ~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
|++++|++++.|+.|++||+.+++. ..+..|.+.|.+++|+|+++++++++ +.+++|....
T Consensus 234 ~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 234 PTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 9999999999999999999998765 46788999999999999999999987 5789997654
No 70
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.1e-34 Score=264.70 Aligned_cols=273 Identities=16% Similarity=0.264 Sum_probs=222.7
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
..+|.+.|+++.| ++++|++|+.|++|++||+.+++.+..+..+...+.++++ ++..+++++ .++.+++|
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~------~dg~i~vw 198 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS------SDSTVRVW 198 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEE------TTSCEEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEc------CCCeEEEE
Confidence 3467778998887 7999999999999999999999998888888777877776 555554432 35899999
Q ss_pred EccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee---eeeeecCccEEEEcCCCCEEEEEEcCC
Q 019603 103 SMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ---GILRLRGRPTVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 103 ~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~dg 179 (338)
++.+++.+..+.+|...|.++.|++ +.+++|+.|++|++||+++++.. ..+..+...+.++..++..+++++.||
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 276 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 276 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCC
Confidence 9999999999999999999999974 59999999999999999887654 333444445555555888999999999
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 259 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 259 (338)
.|++||+++... .....+|...+.++.+ +++++++++.|+.|++||..+++....+ ..|...+.+++| ++
T Consensus 277 ~i~vwd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 277 TIKVWNTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRF--DN 346 (435)
T ss_dssp EEEEEETTTCCE----EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEC--CS
T ss_pred eEEEEECCcCcE----EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE--eCCcCcEEEEEe--cC
Confidence 999999876432 2334578888999988 4679999999999999999988766544 456677888888 78
Q ss_pred CEEEEEcCCCcEEEEECCCCC---------eEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCC
Q 019603 260 QYVVSGSGDGTLHAWNINTRN---------EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 260 ~~l~sgs~Dg~i~vWd~~~~~---------~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~ 319 (338)
.+|++|+.||.|++||+.+++ ++..+.+|.+.|.+++| ++.++++++ +.+++|.....
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999997655 78899999999999999 677888887 57999976543
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.5e-34 Score=273.02 Aligned_cols=288 Identities=15% Similarity=0.212 Sum_probs=227.2
Q ss_pred ccceeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeeccc---CeeeEEEeec-CCeeEEecCccC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKH---GADCVCFTHH-PSSVICSTKYNL 92 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~ 92 (338)
++...+.+|.+.|++++|+|+++ +|++++.|+.|++||+.+++.+..+..+.. .+.+++|+++ +..++.++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---- 226 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---- 226 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE----
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe----
Confidence 45677889999999999999998 899999999999999999999888887777 7889999887 66665543
Q ss_pred CCCCceeEEEEccCCeEEEee-c---CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC----c--cE
Q 019603 93 DSTGESLRYLSMYDNRILRYF-K---GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----R--PT 162 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~-~---~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~----~--~~ 162 (338)
.++.+++|++.+++.+..+ . +|...|.++.|+ ++++|++++.|+.|++||++++++...+..+. . ..
T Consensus 227 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 227 --SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp --TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred --CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 2478999999999999988 6 899999999999 99999999999999999999988877776552 1 12
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe---------------------------------cCCCCceEEE
Q 019603 163 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV---------------------------------GGDTAEVCDI 209 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------~~~~~~i~~v 209 (338)
+.+ +++..+++++.|+.+++||++.... .... .+|...|.++
T Consensus 304 ~~~-~~~~~l~~~~~~g~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~ 378 (615)
T 1pgu_A 304 VVA-TGNGRIISLSLDGTLNFYELGHDEV----LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSL 378 (615)
T ss_dssp EEE-EETTEEEEEETTSCEEEEETTEEEE----EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred EEe-CCCCeEEEEECCCCEEEEECCCCcE----EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEE
Confidence 344 3788999999999999999763210 0001 1122223333
Q ss_pred EEc----------------------------------CC--------------------------------------CCE
Q 019603 210 KFS----------------------------------ND--------------------------------------GKS 217 (338)
Q Consensus 210 ~~s----------------------------------p~--------------------------------------~~~ 217 (338)
.|+ |+ +++
T Consensus 379 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (615)
T 1pgu_A 379 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY 458 (615)
T ss_dssp ECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSE
T ss_pred EECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCE
Confidence 331 11 445
Q ss_pred EEEEec-CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC-CCCceEEE
Q 019603 218 MLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACL 295 (338)
Q Consensus 218 i~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~v~~l 295 (338)
+++++. ++.+++|+..+++... .....|...+++++|+|++++|++++.||.|++||+.+++.+..+.+ |.+.|+++
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~ 537 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI 537 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE
T ss_pred EEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEE
Confidence 555555 6666666665443322 44556778899999999999999999999999999999999999988 99999999
Q ss_pred EEcC----------CCceEEeec--ceEEEeeeCC
Q 019603 296 KWAP----------RRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 296 ~~~p----------~~~~l~s~s--~~~~iw~~~~ 318 (338)
+|+| ++++|++++ +.+++|....
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence 9999 999999997 5799997754
No 72
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-34 Score=260.32 Aligned_cols=243 Identities=16% Similarity=0.247 Sum_probs=201.0
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
...|++++|+|+|++|++|+.|++|++||+.+++.+..+.+|...+.+++|++++..++.++ .++++++||+.+
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s------~d~~v~iwd~~~ 196 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS------GDRTVRIWDLRT 196 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTT
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec------CCCcEEEEECCC
Confidence 34599999999999999999999999999999998888888888899999988777666543 358999999999
Q ss_pred CeEEEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeeee-------ecC--ccEEEEcCCCCEEEEEE
Q 019603 107 NRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILR-------LRG--RPTVAFDQQGLVFAVAM 176 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~ 176 (338)
+++...+. |...|.+++|+| ++++|++|+.|++|++||++++++...+. .+. ...++|+|++..+++++
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 98877765 667899999999 88999999999999999999887765542 122 24588999999999999
Q ss_pred cCCeEEEEeCCCCCCC--------CCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC
Q 019603 177 EAGAIKLFDSRSYDKG--------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
.|+.|++||++..... ........+|...|.++.|+|+++++++++.|+.|++||..+++....+ .+|..
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l--~~h~~ 353 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--QGHRN 353 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--ECCSS
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE--CCCCC
Confidence 9999999998753211 0112234578889999999999999999999999999999988766544 46677
Q ss_pred CCeeEEECC------CCCEEEEEcCCCcEEEEECCC
Q 019603 249 TNTEATFTP------DGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 249 ~~~~~~fs~------~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.+.+++|++ ++.+|+||+.||+|+||++.+
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 899999876 688999999999999999864
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.5e-33 Score=259.20 Aligned_cols=280 Identities=18% Similarity=0.338 Sum_probs=231.1
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
++.....+.+|.+.|.. +++++|++|++|+.|++|++||+.+++.+..+..|...+.++.++ +..++.+ +.
T Consensus 107 ~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~------~~ 177 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISG------ST 177 (445)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEE------ET
T ss_pred CcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEE------eC
Confidence 45567789999987643 355569999999999999999999999988888888888877775 4444443 23
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVA 175 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
++++++|++.+++.+..+.+|...|.++.|+ ++.+++|+.|++|++||++++++...+..+.....++..++..++++
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 255 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG 255 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEE
Confidence 5899999999999999999999999999996 57899999999999999999988877776666655555588899999
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
+.|+.|++||.+.... .....+|...+.++.| ++.++++++.|+.|++||..+++....+ ..|...+..+.+
T Consensus 256 ~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~ 327 (445)
T 2ovr_B 256 AYDFMVKVWDPETETC----LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL--TGHQSLTSGMEL 327 (445)
T ss_dssp ETTSCEEEEEGGGTEE----EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE--CCCCSCEEEEEE
T ss_pred cCCCEEEEEECCCCcE----eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE--cCCcccEEEEEE
Confidence 9999999999875321 2334578888999998 7889999999999999999988766544 455556666555
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC---CCCceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
++.+|++|+.||.|++||+.+++.+..+.+ |.+.|.+++|++ .++++++ +.+++|....
T Consensus 328 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 328 --KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp --ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTT
T ss_pred --eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEEEEeCCCeEEEEECCC
Confidence 578999999999999999999999999986 889999999974 6788876 5799997653
No 74
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.5e-35 Score=268.20 Aligned_cols=282 Identities=12% Similarity=0.175 Sum_probs=221.1
Q ss_pred CcceeEEEeecCCCE-EEEeeCCCcEEEEEcCCCe----eEeEEeecccCeeeEEEee-cCCeeEEecCccCCCCCceeE
Q 019603 27 GGKINSLDFHRKDDL-LVTASDDDSVRLYDIVSAK----LIKTTYHKKHGADCVCFTH-HPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~-l~s~s~D~~i~iWd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~ 100 (338)
......++++|+... +++++.|+.|++|++.... .+..+.+|...+.+++|++ ++..++.++ .++.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s------~dg~v~ 107 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS------EDCTVM 107 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE------TTSEEE
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe------CCCeEE
Confidence 344556889988764 4468899999999996542 2334456777889999988 555554432 348999
Q ss_pred EEEccCC-------eEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeee--eecC--ccEEEEcCC
Q 019603 101 YLSMYDN-------RILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGIL--RLRG--RPTVAFDQQ 168 (338)
Q Consensus 101 ~~~~~~~-------~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~--~~~~--~~~~~~~~~ 168 (338)
+|++.++ +.+..+.+|...|++++|+|++ ++|++|+.|++|++||++++++...+ ..+. ...++|+|+
T Consensus 108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 187 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187 (402)
T ss_dssp EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence 9999887 5678899999999999999998 69999999999999999999887776 3333 345889999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe-cCCCCc-eEEEEEcCCCCEEEEE---ecCCcEEEEEccCCeeEEEeee
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GGDTAE-VCDIKFSNDGKSMLLT---TTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~-i~~v~~sp~~~~i~~~---~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
+..+++++.|+.|++||++.... .... .+|... +..+.|+|++++++++ +.++.|++||...++.......
T Consensus 188 ~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPRKGTV----VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp SSCEEEEETTSEEEEEETTTTEE----EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred CCEEEEEecCCcEEEEeCCCCce----eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 99999999999999999886421 1222 345444 8899999999988888 6899999999987654222222
Q ss_pred CCCCCCCeeEEECCCCCEEE-EEcCCCcEEEEECCCCCe-EeEeeC--CCCceEEEEEcCCCceEEeecceEEEeeeCC
Q 019603 244 EPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNE-VACWNG--NIGVVACLKWAPRRAMFVAASSVLSFWIPNP 318 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~~~l~-sgs~Dg~i~vWd~~~~~~-~~~~~~--h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~~ 318 (338)
..+...+..++|+|++++|+ +|+.||.|++||+.+++. +..+.. |.+.|.+++|+|++.+++++++.+++|....
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 34556789999999999996 566899999999998774 555544 4599999999999999999888999998653
No 75
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-33 Score=247.82 Aligned_cols=248 Identities=21% Similarity=0.304 Sum_probs=206.2
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.....+.+|...|++++|+|++++|++|+.|+.|++||+.+++++..+..+...+.++.|++++..++.++ .++
T Consensus 56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~d~ 129 (312)
T 4ery_A 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS------FDE 129 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE------TTS
T ss_pred ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe------CCC
Confidence 45667889999999999999999999999999999999999999888888888888999988776665543 348
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcCCCCEEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAV 174 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 174 (338)
.+++||+.+++.+..+.+|...|.++.|+|++++|++|+.|+.|++||++++++...+.... ...+.|+|++.++++
T Consensus 130 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 89999999999999999999999999999999999999999999999999888766554322 234789999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCc---eEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE---VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
++.|+.|++||++.... .....++... +......+++.++++++.|+.|++||+.+++... .+.+|...+.
T Consensus 210 ~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~ 283 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVI 283 (312)
T ss_dssp EETTTEEEEEETTTTEE----EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE--EECCCSSCEE
T ss_pred EcCCCeEEEEECCCCcE----EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh--hhhccCCcEE
Confidence 99999999999876421 1222333322 2223334678899999999999999998887665 4456777899
Q ss_pred eEEECCCCCEEEEEc--CCCcEEEEECC
Q 019603 252 EATFTPDGQYVVSGS--GDGTLHAWNIN 277 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs--~Dg~i~vWd~~ 277 (338)
.++|+|++++|++++ .|++|++|+..
T Consensus 284 ~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 284 STACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999986 79999999975
No 76
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.9e-33 Score=249.59 Aligned_cols=289 Identities=11% Similarity=0.119 Sum_probs=209.5
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.++..+.+|.+.|++++|+|||++|++|+.| .+++||+.+++....... .++..+.+.+.+..++..+ +.++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~d~ 81 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVT-----GVKE 81 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEEC-----SSTT
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEE-----CCcc
Confidence 3455668999999999999999999998876 489999988776544322 3566677776666554332 2346
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeeeeeecCccEEEEcCCCCEEEE--
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRPTVAFDQQGLVFAV-- 174 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-- 174 (338)
++++||..+++.+..+. |...|.++.++++. ++.+ .|+.|++||++++ +....+.. .....++++ ..++.
T Consensus 82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~--~~la~~s 154 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN--GLLVYSN 154 (355)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET--TEEEEEE
T ss_pred EEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc--cEEEEeC
Confidence 99999999999988887 77799999998753 3333 4889999999887 66555554 333466777 45554
Q ss_pred EEcCCeEEEEeCCCCCCC------C-----Ce-eEEecCCCCceEEEEEcCCCCEEEEEecCCc-EEEEEccCCeeEEEe
Q 019603 175 AMEAGAIKLFDSRSYDKG------P-----FD-TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGF 241 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~------~-----~~-~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~-i~i~~~~~~~~~~~~ 241 (338)
+..+|.|++||++..... . .. ...+.+|...|.+++|+|+++++++++.|++ |++||..+++....+
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 589999999998764300 0 00 2345689999999999999999999999998 999999998877665
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe--EeEee---------------------CCCCceEEEEEc
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE--VACWN---------------------GNIGVVACLKWA 298 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~--~~~~~---------------------~h~~~v~~l~~~ 298 (338)
....|...+.+++|+|+|++|++++.|++|++||+.++.. ...+. .+......++|+
T Consensus 235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 314 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI 314 (355)
T ss_dssp ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence 5323677899999999999999999999999999976431 11111 112234679999
Q ss_pred CCCceEEeec--ceEEEeeeCCCCC
Q 019603 299 PRRAMFVAAS--SVLSFWIPNPSSN 321 (338)
Q Consensus 299 p~~~~l~s~s--~~~~iw~~~~~~~ 321 (338)
|++..+++++ +.+.+|.......
T Consensus 315 ~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 315 SESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp SSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 9999999986 5678887654433
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=267.18 Aligned_cols=264 Identities=14% Similarity=0.103 Sum_probs=205.6
Q ss_pred ccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEE
Q 019603 24 SDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLS 103 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (338)
+.....|.+|+|+|||++++|+|.|++|+ |...++.+ .+|...+..++|++++ .++.|+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg----------------~~~~~~ 70 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE----------------FENKLD 70 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC----------------CCCTTT
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC----------------CcceEE
Confidence 35578999999999999999999999999 87666544 5677788888887754 234444
Q ss_pred ccCCeEEEeec-CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC-------ccEEEEcCCCCEEEEE
Q 019603 104 MYDNRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-------RPTVAFDQQGLVFAVA 175 (338)
Q Consensus 104 ~~~~~~~~~~~-~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 175 (338)
+++++....+. +|...|++++|+|+|++||+++.||+|++||... +...+. +. ...++|+|+|.++++|
T Consensus 71 ~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 71 FELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp TSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred EEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 44444333343 6789999999999999999999999999999543 444444 33 3468999999999999
Q ss_pred EcCCeEEEEeCCCCCCCCC---eeEEe----cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEE-Eeee-CCC
Q 019603 176 MEAGAIKLFDSRSYDKGPF---DTFLV----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-GFSL-EPS 246 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~---~~~~~----~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~-~~~~-~~~ 246 (338)
+.||+|++||+........ ....+ .+|...|.+++|+|+| +++++.|+.+++|+..++.... ...+ .+|
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS 225 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc
Confidence 9999999999876432111 11222 5677899999999999 8889999999999987766321 1122 256
Q ss_pred CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEE--cCCCceEEeec--ceEEEeeeC
Q 019603 247 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW--APRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~--~p~~~~l~s~s--~~~~iw~~~ 317 (338)
...|.+++|+ |+.||+++ |++|++||+.+++......+|.+.|+.++| +|++..+++++ ++ ++|..+
T Consensus 226 ~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 6789999999 68999997 699999999987764444489999999999 99999999997 45 799875
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-33 Score=252.86 Aligned_cols=252 Identities=16% Similarity=0.257 Sum_probs=205.5
Q ss_pred eeecc-CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 21 AIFSD-FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 21 ~~~~~-h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
..+.. |.+.|++++|+|++++|++|+.|+.|++||+.+++.+..+..+...+.++++ ++..++.++ .++.+
T Consensus 127 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~------~dg~i 198 (401)
T 4aez_A 127 ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGS------RSGAI 198 (401)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEE------TTSEE
T ss_pred EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEc------CCCCE
Confidence 34433 8999999999999999999999999999999999988888877777887777 455554432 34899
Q ss_pred EEEEcc-CCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcCCCC-EEEEE
Q 019603 100 RYLSMY-DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGL-VFAVA 175 (338)
Q Consensus 100 ~~~~~~-~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~ 175 (338)
++|++. .......+.+|...|.+++|+|++++|++|+.|+.|++||++++++...+..+. ...+.|+|++. +++++
T Consensus 199 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 199 HHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred EEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence 999998 567788899999999999999999999999999999999999888776665443 34689999764 66665
Q ss_pred E--cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe--cCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 176 M--EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 176 ~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
+ .|+.+++||++.... ... . .+...+.++.|+|+++++++++ .++.|++|+..++..........|...+.
T Consensus 279 ~gs~d~~i~i~d~~~~~~--~~~--~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~ 353 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGAR--VNT--V-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL 353 (401)
T ss_dssp CCTTTCEEEEEETTTCCE--EEE--E-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred cCCCCCEEEEEECCCCCE--EEE--E-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEE
Confidence 5 799999999876432 211 2 2456799999999999999854 79999999999887777777778888999
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe
Q 019603 252 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~ 285 (338)
+++|+|+|++|++++.||.|++|++.+++.+...
T Consensus 354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 354 YSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999999999999999999999988776654
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.3e-33 Score=265.22 Aligned_cols=286 Identities=13% Similarity=0.146 Sum_probs=235.7
Q ss_pred ccceeeccCCcc-eeEEEeec--CCCEEEEeeCCCcEEEEEcCCC--------eeEeEEeecccCeeeEEEeecCCeeEE
Q 019603 18 AMAAIFSDFGGK-INSLDFHR--KDDLLVTASDDDSVRLYDIVSA--------KLIKTTYHKKHGADCVCFTHHPSSVIC 86 (338)
Q Consensus 18 ~~~~~~~~h~~~-V~~l~~s~--~~~~l~s~s~D~~i~iWd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (338)
.+...+.+|.+. |++++|+| ++++|++|+.|++|++||+.++ +.+..+..+...+..++|++++..++.
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 567788999999 99999999 9999999999999999999755 566666667788999999988777665
Q ss_pred ecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecCc-----
Q 019603 87 STKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR----- 160 (338)
Q Consensus 87 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~----- 160 (338)
++... ...+.+++|+ .++.+..+.+|...|+++.|+|+++ .+++++.|+.|++||++.+++...+..+..
T Consensus 134 ~~~~~--~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v 209 (615)
T 1pgu_A 134 VGEGR--DNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 209 (615)
T ss_dssp EECCS--SCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred eccCC--CCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceE
Confidence 54210 0114566666 6778889999999999999999998 799999999999999999888777765543
Q ss_pred cEEEEcCC-CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe-c---CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC
Q 019603 161 PTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-G---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~---~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~ 235 (338)
..+.|+|+ +..+++++.|+.|++||++.... ...+ . +|...|.++.|+ +++++++++.|+.+++||..++
T Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCE----eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 35889999 99999999999999999876431 2223 3 678899999999 9999999999999999999988
Q ss_pred eeEEEeeeCCC--CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceE
Q 019603 236 EKRCGFSLEPS--PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 311 (338)
Q Consensus 236 ~~~~~~~~~~~--~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~ 311 (338)
+....+..... ...+..+.|+ ++.++++++.||.|++||+.+++.+..+.+|.+.|.+++| |+ +++++ +.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i 359 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRI 359 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCE
T ss_pred cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeE
Confidence 87776665432 2456677775 8999999999999999999999999999999999999999 88 55554 567
Q ss_pred EEeeeC
Q 019603 312 SFWIPN 317 (338)
Q Consensus 312 ~iw~~~ 317 (338)
++|...
T Consensus 360 ~~w~~~ 365 (615)
T 1pgu_A 360 MEWSSS 365 (615)
T ss_dssp EETTTT
T ss_pred EEEEch
Confidence 777643
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-32 Score=268.56 Aligned_cols=247 Identities=17% Similarity=0.266 Sum_probs=201.5
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
....+.+|.+.|++++|+|++++|+||+.|++|+|||+.+++.+..+..|...+.+++|++++..+++++ .+++
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~D~~ 495 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS------RDRT 495 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE------TTSC
T ss_pred ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEe------CCCE
Confidence 3457889999999999999999999999999999999999999888888888999999998877766543 3589
Q ss_pred eEEEEccCCeEEEe---ecCCccceEEEEEcCCC--CEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCE
Q 019603 99 LRYLSMYDNRILRY---FKGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLV 171 (338)
Q Consensus 99 i~~~~~~~~~~~~~---~~~H~~~V~~l~~~~~~--~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~ 171 (338)
+++|+......... ..+|...|.++.|+|++ ..++||+.|++|++||++.+++...+..|.. ..++|+|++.+
T Consensus 496 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575 (694)
T ss_dssp EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 99999866544332 25799999999999986 5799999999999999999888777766554 45889999999
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC------
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------ 245 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~------ 245 (338)
+++++.|+.|++||++.... .....+...+.+++|+|++.++++ +.++.|++||+.++.....+....
T Consensus 576 l~sg~~Dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 649 (694)
T 3dm0_A 576 CASGGKDGVVLLWDLAEGKK-----LYSLEANSVIHALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEK 649 (694)
T ss_dssp EEEEETTSBCEEEETTTTEE-----EECCBCSSCEEEEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCCCC-----
T ss_pred EEEEeCCCeEEEEECCCCce-----EEEecCCCcEEEEEEcCCCcEEEE-EcCCCEEEEECCCCCChhhhcccccccccc
Confidence 99999999999999876431 111123567999999999876655 557789999999887765543221
Q ss_pred -----------CCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 246 -----------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 246 -----------~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
+...+++++|+|+|++|+||+.||.|+||++.
T Consensus 650 ~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 11236789999999999999999999999986
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=281.24 Aligned_cols=207 Identities=17% Similarity=0.214 Sum_probs=161.7
Q ss_pred cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee--eeee---------ec--CccEEEEcCCCCEEEEEEcCCe
Q 019603 114 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ--GILR---------LR--GRPTVAFDQQGLVFAVAMEAGA 180 (338)
Q Consensus 114 ~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~--~~~~---------~~--~~~~~~~~~~~~~~~~~~~dg~ 180 (338)
.||...|.+++|+|++++|+|||.|++||+||+..++.. ..+. .+ ....++|+|+|..+++|+.||+
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt 511 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD 511 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE
Confidence 445555555666788999999999999999999877432 1122 12 2346899999999999999999
Q ss_pred EEEEeCCCCCCC---------C-------------------------------C-eeEEecCCCCceEEEEEcCCCCEEE
Q 019603 181 IKLFDSRSYDKG---------P-------------------------------F-DTFLVGGDTAEVCDIKFSNDGKSML 219 (338)
Q Consensus 181 i~i~d~~~~~~~---------~-------------------------------~-~~~~~~~~~~~i~~v~~sp~~~~i~ 219 (338)
|++||+...... . + ....+.+|...|++++|+|+| +++
T Consensus 512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lA 590 (902)
T 2oaj_A 512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVG 590 (902)
T ss_dssp EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEE
T ss_pred EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEE
Confidence 999997643100 0 0 023455789999999999999 999
Q ss_pred EEecCCcEEEEEccCCeeEEEee---e-CCCCCCCeeEEEC-----CCC---CEEEEEcCCCcEEEEEC---CCCCeEeE
Q 019603 220 LTTTNNNIYVLDAYGGEKRCGFS---L-EPSPNTNTEATFT-----PDG---QYVVSGSGDGTLHAWNI---NTRNEVAC 284 (338)
Q Consensus 220 ~~~~d~~i~i~~~~~~~~~~~~~---~-~~~~~~~~~~~fs-----~~~---~~l~sgs~Dg~i~vWd~---~~~~~~~~ 284 (338)
+++.|+.|++||+.++..+.... . .+|...|++++|+ ||| ++|++|+.|++|++||+ .+++.+..
T Consensus 591 sgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 591 IAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred EEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 99999999999988776543222 2 2778889999999 886 89999999999999999 78888888
Q ss_pred eeCCC-----CceEEEE-Ec----------------------CCCceEEeecceEEEeeeCCCCC
Q 019603 285 WNGNI-----GVVACLK-WA----------------------PRRAMFVAASSVLSFWIPNPSSN 321 (338)
Q Consensus 285 ~~~h~-----~~v~~l~-~~----------------------p~~~~l~s~s~~~~iw~~~~~~~ 321 (338)
|.+|. +.|.++. |+ |++..++++...++||.++....
T Consensus 671 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~ 735 (902)
T 2oaj_A 671 LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKS 735 (902)
T ss_dssp EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCE
T ss_pred ecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCccccc
Confidence 88774 7888887 77 67778888878999998776443
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-33 Score=252.98 Aligned_cols=245 Identities=15% Similarity=0.265 Sum_probs=199.5
Q ss_pred CCcceeEEEeecC----CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEee-cCCeeEEecCccCCCCCceeE
Q 019603 26 FGGKINSLDFHRK----DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTH-HPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 26 h~~~V~~l~~s~~----~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~ 100 (338)
|.+.|++++|+|+ +++|++|+.|+.|++||+.+++.+..+..+...+.+++|++ ++..+++++ .++.++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~------~dg~i~ 141 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS------KDHALR 141 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE------TTSCEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe------CCCeEE
Confidence 6788999999999 67999999999999999999999888888888899999988 555555443 248899
Q ss_pred EEEccCCeEEEee---cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee--------------------
Q 019603 101 YLSMYDNRILRYF---KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-------------------- 157 (338)
Q Consensus 101 ~~~~~~~~~~~~~---~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~-------------------- 157 (338)
+|++.+++.+..+ .+|...|.+++|+|++++|++|+.|+.|++||+++++....+..
T Consensus 142 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp EEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred EEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 9999999998888 78999999999999999999999999999999987765432221
Q ss_pred --------cC--ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCC----------CeeEEecCCCCceEEEEEcCC--C
Q 019603 158 --------RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP----------FDTFLVGGDTAEVCDIKFSND--G 215 (338)
Q Consensus 158 --------~~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~i~~v~~sp~--~ 215 (338)
+. ...+.|+ +.++++++.|+.|++||++...... .......+|...|.++.|+|+ +
T Consensus 222 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp CSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred CccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 22 2346666 7799999999999999987643210 112234467778999999999 9
Q ss_pred CEEEEEecCCcEEEEEccCCeeE----EEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 216 KSMLLTTTNNNIYVLDAYGGEKR----CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 216 ~~i~~~~~d~~i~i~~~~~~~~~----~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
+++++++.|+.|++||+.+++.. ..+..+.+...+.+++|+|++++|++++.||.|++||+.+
T Consensus 300 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999999877532 2344444468899999999999999999999999999863
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-31 Score=238.34 Aligned_cols=251 Identities=16% Similarity=0.225 Sum_probs=202.0
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.+...+.+|.+.|++++|+|+|++|++|+.|+.|++|+............+........+.+....++.++ .++
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s------~d~ 150 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS------RDK 150 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE------TTS
T ss_pred eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeec------CCC
Confidence 35677899999999999999999999999999999999999887776666666677777766666555433 347
Q ss_pred eeEEEEccCCeE-EEeecCCccceEEEEEcCCC--CEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEE
Q 019603 98 SLRYLSMYDNRI-LRYFKGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVF 172 (338)
Q Consensus 98 ~i~~~~~~~~~~-~~~~~~H~~~V~~l~~~~~~--~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (338)
.+++|+...... ...+.+|...|..+.|++++ .++++++.|++|++||++.+++...+..+.. ..++|+|++.++
T Consensus 151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 230 (340)
T 4aow_A 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 230 (340)
T ss_dssp CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEE
Confidence 899999876544 45568899999999999875 4789999999999999999988777765544 357899999999
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEee-------eCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-------LEP 245 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~-------~~~ 245 (338)
++++.|+.|++||++.... . ... .+...+..+.|+|++. +++++.|+.|++||..++.....+. ...
T Consensus 231 ~s~s~Dg~i~iwd~~~~~~--~--~~~-~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 304 (340)
T 4aow_A 231 ASGGKDGQAMLWDLNEGKH--L--YTL-DGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 304 (340)
T ss_dssp EEEETTCEEEEEETTTTEE--E--EEE-ECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------C
T ss_pred EEEeCCCeEEEEEeccCce--e--eee-cCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccC
Confidence 9999999999999876421 1 122 2345799999999875 5667789999999998876655433 235
Q ss_pred CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 246 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
|...+++++|+|+|++|+||+.||.|+|||+.+|.
T Consensus 305 h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 67789999999999999999999999999999875
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-32 Score=249.83 Aligned_cols=283 Identities=11% Similarity=0.010 Sum_probs=221.4
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe---eEeEEeecc---------------------------------
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK---LIKTTYHKK--------------------------------- 69 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~---~~~~~~~~~--------------------------------- 69 (338)
+..++++++|+|+|++|+++ .++.|++||+.+|+ .+..+..+.
T Consensus 3 ~~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 3 VIHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp EECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 34688999999999966655 57899999999988 555544221
Q ss_pred ---------------------cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc--CCeEEEeec--CCccceEEEE
Q 019603 70 ---------------------HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY--DNRILRYFK--GHKERVISLC 124 (338)
Q Consensus 70 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~--~H~~~V~~l~ 124 (338)
..+.+++|++++..+++.+ +.++.+++|++. +++.+..+. .|...|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACA-----DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEE-----GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEE-----CCCCeEEEEECcCCCCceeeeeecccCCCCceEEE
Confidence 1477788887776653322 234899999999 888888876 5779999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCcceee----eeeecC--ccEEEEcCC---CCEEEEEEcCCeEEEEeCCCCCCCCCe
Q 019603 125 MSPVNDSFMSGSLDHSVRIWDLRVNACQG----ILRLRG--RPTVAFDQQ---GLVFAVAMEAGAIKLFDSRSYDKGPFD 195 (338)
Q Consensus 125 ~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~----~~~~~~--~~~~~~~~~---~~~~~~~~~dg~i~i~d~~~~~~~~~~ 195 (338)
|+|++++|++|+.|+.|++||+..++... .+..+. ...+.|+|+ +.++++++.|+.|++||++.... .
T Consensus 157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~---~ 233 (450)
T 2vdu_B 157 IAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI---V 233 (450)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC---E
T ss_pred EcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce---e
Confidence 99999999999999999999998776543 444443 345889999 88999999999999999876432 2
Q ss_pred eEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC-----------------------CCCCCCee
Q 019603 196 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-----------------------PSPNTNTE 252 (338)
Q Consensus 196 ~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~ 252 (338)
.....+|...|.++.|+ +++++++++.|+.|++||+.+++....+... .....+..
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 22245788999999999 9999999999999999999998877665432 22346788
Q ss_pred EEECCCCCEEEEEc-CCCcEEEEEC--CCC---CeEeEeeCCCCceEEEEEcCCCceEEeecc--------eEEEeeeCC
Q 019603 253 ATFTPDGQYVVSGS-GDGTLHAWNI--NTR---NEVACWNGNIGVVACLKWAPRRAMFVAASS--------VLSFWIPNP 318 (338)
Q Consensus 253 ~~fs~~~~~l~sgs-~Dg~i~vWd~--~~~---~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--------~~~iw~~~~ 318 (338)
++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++.+++.++. .+.+|....
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999999999998 8999999999 555 667778888 89999999996544443332 378997765
Q ss_pred C
Q 019603 319 S 319 (338)
Q Consensus 319 ~ 319 (338)
.
T Consensus 392 ~ 392 (450)
T 2vdu_B 392 N 392 (450)
T ss_dssp T
T ss_pred C
Confidence 4
No 85
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.1e-33 Score=251.26 Aligned_cols=253 Identities=13% Similarity=0.122 Sum_probs=208.7
Q ss_pred cccceeeccCCcceeEEEeecC----C---CEEEEeeCCCcEEEEEcCCCee-----EeEEeec-----ccCeeeEEEe-
Q 019603 17 MAMAAIFSDFGGKINSLDFHRK----D---DLLVTASDDDSVRLYDIVSAKL-----IKTTYHK-----KHGADCVCFT- 78 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~----~---~~l~s~s~D~~i~iWd~~~~~~-----~~~~~~~-----~~~~~~~~~~- 78 (338)
+.+...+.+|.+.|++++|+|+ + ++|++++.|+.|++||+.+++. +..+..+ ...+.+++|+
T Consensus 52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 5577888899999999999999 9 9999999999999999988775 6666666 4778889998
Q ss_pred ---ecCCe-eEEecCccCCCCCceeEEEEccC------CeEEE-----ee-------cCCccceEEEEEcCCCCEEEEEE
Q 019603 79 ---HHPSS-VICSTKYNLDSTGESLRYLSMYD------NRILR-----YF-------KGHKERVISLCMSPVNDSFMSGS 136 (338)
Q Consensus 79 ---~~~~~-~~~~~~~~~~~~~~~i~~~~~~~------~~~~~-----~~-------~~H~~~V~~l~~~~~~~~l~Sgs 136 (338)
++... +++++ .++.+++|++.+ ++.+. .+ ..|...|.+++|+|++ +|++|+
T Consensus 132 ~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~ 204 (397)
T 1sq9_A 132 SNDRLLSHRLVATD------VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF 204 (397)
T ss_dssp CC----CEEEEEEE------TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred ccCCCCceEEEEEe------CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe
Confidence 76666 55432 348899999988 65555 66 4599999999999999 999999
Q ss_pred CCCeEEEEECCCcceeeeeee---c---Cc--cEEEEcCCCCEEEEEEcC---CeEEEEeCCCCCCCCCeeEEecC----
Q 019603 137 LDHSVRIWDLRVNACQGILRL---R---GR--PTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGG---- 201 (338)
Q Consensus 137 ~D~~I~iWd~~~~~~~~~~~~---~---~~--~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~---- 201 (338)
.|+.|++||+++++....+.. + .. ..+.|+|++.++++++.| +.|++||++.... ...+.+
T Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~----~~~~~~~~~~ 280 (397)
T 1sq9_A 205 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER----IGSLSVPTHS 280 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE----EEEECBC---
T ss_pred CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc----cceeccCccc
Confidence 999999999999888777765 4 33 458899999999999999 9999999876431 223334
Q ss_pred ---------CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC----CC---------------CCCCeeE
Q 019603 202 ---------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE----PS---------------PNTNTEA 253 (338)
Q Consensus 202 ---------~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~----~~---------------~~~~~~~ 253 (338)
|...|.++.|+|+++++++++.|+.|++||+.+++....+... .| ...+.++
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 7888999999999999999999999999999999877766621 33 6789999
Q ss_pred EECCCC----------CEEEEEcCCCcEEEEECCCCC
Q 019603 254 TFTPDG----------QYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 254 ~fs~~~----------~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
+|+|++ ++|++++.||.|++|++.+++
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999998 799999999999999998763
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-31 Score=245.82 Aligned_cols=261 Identities=17% Similarity=0.221 Sum_probs=196.0
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
.+.+|.+.|++|+|+|+|++|++|+.|++|+|||+++++++.....|...+.+++ +++..++.+ +.++.+++
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s--~~~~~l~sg------s~d~~i~~ 213 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSG------SRSGHIHH 213 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTEEEEE------ETTSEEEE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEe--eCCCEEEEE------eCCCceeE
Confidence 4457889999999999999999999999999999999999888877766555544 455544433 23488999
Q ss_pred EEccC-CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCccee----eeeeecC--ccEEEEcCCC-CEEE
Q 019603 102 LSMYD-NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ----GILRLRG--RPTVAFDQQG-LVFA 173 (338)
Q Consensus 102 ~~~~~-~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~----~~~~~~~--~~~~~~~~~~-~~~~ 173 (338)
|+... ...+..+.+|...+..+.++|+++++++++.|+.|++||...++.. .....+. ...+.|+|.+ .+++
T Consensus 214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 99876 4567888999999999999999999999999999999999876532 2222222 2347788865 4555
Q ss_pred EE--EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe--cCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 174 VA--MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 174 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
++ +.|+.|++||+++... . ... .....++.+.|+|+++.+++++ .|+.|++||..+++.+.. +.+|...
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~--~--~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--l~gH~~~ 366 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGAC--L--SAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSR 366 (420)
T ss_dssp EEECTTTCEEEEEETTTTEE--E--EEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCCSSC
T ss_pred EEeecCCCEEEEEeCCcccc--c--eee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE--EcCCCCC
Confidence 54 5799999999876432 1 112 2345788999999999988776 689999999998877654 4577889
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEE
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW 297 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~ 297 (338)
|++++|+|+|++|+|||.||+|+|||+.+..+.+..+.+...+....|
T Consensus 367 V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 367 VLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999999999999999999999999999887776666666555444333
No 87
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.8e-32 Score=266.37 Aligned_cols=288 Identities=13% Similarity=0.199 Sum_probs=234.9
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
...++..+.+|.+.|++++|+|++++|++|+.|+.|++||+.+++.+..+..+...+.+++|++++..+++++ .
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~ 117 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS------D 117 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE------T
T ss_pred CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc------C
Confidence 3456778889999999999999999999999999999999999999888888888899999988877666543 3
Q ss_pred CceeEEEEccCC-eEEEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeeeeec---CccEEEEcC--C
Q 019603 96 GESLRYLSMYDN-RILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQ--Q 168 (338)
Q Consensus 96 ~~~i~~~~~~~~-~~~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~---~~~~~~~~~--~ 168 (338)
++.+++|++.++ .....+.+|...|.+++|+| +++.|++|+.|++|++||++.++....+..+ ....+.|+| +
T Consensus 118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTT
T ss_pred CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCC
Confidence 489999999886 77888999999999999999 7889999999999999999887765555443 335688888 8
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
+..+++++.||.|++||.+.... .....+|...|.++.|+|+++++++++.|+.|++||..+++....+ ..+..
T Consensus 198 ~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--~~~~~ 271 (814)
T 3mkq_A 198 KPYMITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL--NVGLE 271 (814)
T ss_dssp CCEEEEECTTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE--CCSSS
T ss_pred CCEEEEEeCCCEEEEEECCCCcE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ecCCC
Confidence 99999999999999999875321 2334567889999999999999999999999999999888766544 44556
Q ss_pred CCeeEEECCCCC--EEEEEcCCCcEEEEECCCCCeEeE------------------------------------------
Q 019603 249 TNTEATFTPDGQ--YVVSGSGDGTLHAWNINTRNEVAC------------------------------------------ 284 (338)
Q Consensus 249 ~~~~~~fs~~~~--~l~sgs~Dg~i~vWd~~~~~~~~~------------------------------------------ 284 (338)
.+.+++|+|+++ +++++ .|+.+.+|++........
T Consensus 272 ~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (814)
T 3mkq_A 272 RSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK 350 (814)
T ss_dssp SEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCE
T ss_pred cEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeee
Confidence 799999999997 45554 567788998764322111
Q ss_pred -eeCCCCceEEEEEcCCCceEEeec-ceEEEeee
Q 019603 285 -WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 316 (338)
Q Consensus 285 -~~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw~~ 316 (338)
+..+...+.+++|+|+++++++++ +.+.+|..
T Consensus 351 ~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~ 384 (814)
T 3mkq_A 351 ELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTA 384 (814)
T ss_dssp EECCCSSCCSEEEECTTSSEEEEEETTEEEEEET
T ss_pred cCCCCccCCceeEECCCCCEEEEecCCEEEEEEC
Confidence 133455688999999999888876 56778864
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=263.91 Aligned_cols=260 Identities=12% Similarity=0.119 Sum_probs=194.4
Q ss_pred cCCcceeEEEeecCC---------CEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 25 DFGGKINSLDFHRKD---------DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~---------~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
.+++.|++|+|+|++ ++|++|+.++.. .. .+++...+ ++ .+.
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~~---------------~~~~~~~l--aS----~s~ 181 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------EP---------------LNEHLEMF--DK----EKH 181 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------------
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------Cc---------------cchhhhhh--cc----CCC
Confidence 478999999999987 799998877531 00 01111111 11 234
Q ss_pred CceeEEEEccCCeE----EEeecCCccceEEEEEcCC------CCEEEEEECCCeEEEEECCCccee-----------ee
Q 019603 96 GESLRYLSMYDNRI----LRYFKGHKERVISLCMSPV------NDSFMSGSLDHSVRIWDLRVNACQ-----------GI 154 (338)
Q Consensus 96 ~~~i~~~~~~~~~~----~~~~~~H~~~V~~l~~~~~------~~~l~Sgs~D~~I~iWd~~~~~~~-----------~~ 154 (338)
+++|++|++.+++. ...+.+|.+.|.+++|+|+ +.+|||||.|++|++||+..+++. ..
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 58999999987654 2446778999999999996 479999999999999999766432 12
Q ss_pred eeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEE--EEcCCC-CEEEEEecCCcEEE
Q 019603 155 LRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI--KFSNDG-KSMLLTTTNNNIYV 229 (338)
Q Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v--~~sp~~-~~i~~~~~d~~i~i 229 (338)
+..+.. .+++|++++ .+++|+.||+|++||++.... + .....+|...|.++ .|+|++ .++++++.|++|++
T Consensus 262 l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~-~--~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 262 LSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV-P--SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp ECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS-C--SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred EEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC-c--eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 223332 357787754 899999999999999875422 2 22345788999999 578887 88999999999999
Q ss_pred EEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-
Q 019603 230 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 308 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s- 308 (338)
||+++++....+..+.....+.+++|+|+++.|++++.|++|++||++++.++..+.+|.+.|++|+|+|++++|++|+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC
Confidence 9998776544444333223478899999999999999999999999999998889999999999999999999999997
Q ss_pred -ceEEEeeeC
Q 019603 309 -SVLSFWIPN 317 (338)
Q Consensus 309 -~~~~iw~~~ 317 (338)
+++++|.+.
T Consensus 418 Dgtv~lwd~~ 427 (524)
T 2j04_B 418 DGSLIITNAA 427 (524)
T ss_dssp TTEEECCBSC
T ss_pred CCEEEEEech
Confidence 579999754
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-33 Score=273.00 Aligned_cols=253 Identities=14% Similarity=0.174 Sum_probs=202.4
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcC--CCeeEeEEeecccCeeeEEEeec--CCeeEEecCccCCCC
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIV--SAKLIKTTYHKKHGADCVCFTHH--PSSVICSTKYNLDST 95 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 95 (338)
+.++.+|.+.|++++|+|+|++|++|+.|++|++||+. +++.+..+..|...+.+++|++. +..+++++ .
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s------~ 75 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS------Y 75 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE------T
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe------C
Confidence 45789999999999999999999999999999999998 45566677778888999999876 44454432 3
Q ss_pred CceeEEEEccCCe--EEEeecCCccceEEEEEcCC--CCEEEEEECCCeEEEEECCCcceeeee--eecC--ccEEEEcC
Q 019603 96 GESLRYLSMYDNR--ILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGIL--RLRG--RPTVAFDQ 167 (338)
Q Consensus 96 ~~~i~~~~~~~~~--~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~~I~iWd~~~~~~~~~~--~~~~--~~~~~~~~ 167 (338)
++.+++|++.+++ .+..+.+|...|++++|+|+ ++.+++|+.||+|++||++.+...... ..+. ...+.|+|
T Consensus 76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 5899999999987 77888999999999999999 899999999999999999887443222 2222 24578888
Q ss_pred -------------CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC---CCEEEEEecCCcEEEEE
Q 019603 168 -------------QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLD 231 (338)
Q Consensus 168 -------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---~~~i~~~~~d~~i~i~~ 231 (338)
++..+++++.||.|++||++.............+|...|.++.|+|+ ++++++++.|+.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 58899999999999999988643211222345678899999999999 89999999999999999
Q ss_pred ccCCeeE---EEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 232 AYGGEKR---CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
..++... .......+...+++++|+|+|++|++|+.||.|++|++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 8876422 1223345667899999999999999999999999999974
No 90
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=247.57 Aligned_cols=247 Identities=13% Similarity=0.159 Sum_probs=205.4
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccC---------------eeeEEEeecC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG---------------ADCVCFTHHP 81 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 81 (338)
...+..+.+|.+.|++++|+|++++|++++.|+.|++||+.+++.+..+..+... +..+.+++..
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD 218 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC
Confidence 3566778899999999999999999999999999999999999888776655544 6777776653
Q ss_pred CeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc-
Q 019603 82 SSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR- 160 (338)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~- 160 (338)
.++++ ..++.+++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++.+++...+..+..
T Consensus 219 -~~~~~------~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 291 (425)
T 1r5m_A 219 -KFVIP------GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS 291 (425)
T ss_dssp -EEEEE------CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC
T ss_pred -EEEEE------cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc
Confidence 23322 2347899999999998889999999999999999999999999999999999998887766654443
Q ss_pred -cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe---
Q 019603 161 -PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE--- 236 (338)
Q Consensus 161 -~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~--- 236 (338)
..+.|+|++ .+++++.|+.+++||++.... ......+...+.++.|+|+++++++++.++.|++|++.+++
T Consensus 292 i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~ 366 (425)
T 1r5m_A 292 IVSASWVGDD-KVISCSMDGSVRLWSLKQNTL----LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS 366 (425)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEETTTTEE----EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--
T ss_pred EEEEEECCCC-EEEEEeCCCcEEEEECCCCcE----eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce
Confidence 457899999 999999999999999875421 23344677889999999999999999999999999987766
Q ss_pred -----------------eEEEeeeCCCCC--CCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 237 -----------------KRCGFSLEPSPN--TNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 237 -----------------~~~~~~~~~~~~--~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
... .+..+.. .+++++|+|++++|++++.||.|++|++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 367 RSLYGNRDGILNPLPIPLYA--SYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------CEECCEEE--EECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eeeecccccccCcccchhhh--hhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 443 3344544 89999999999999999999999999985
No 91
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-33 Score=249.97 Aligned_cols=243 Identities=14% Similarity=0.155 Sum_probs=187.5
Q ss_pred cccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC--eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEE
Q 019603 68 KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN--RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 145 (338)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd 145 (338)
+...+.+++|++++..++++ +.++.+++|++.++ +.+..+.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~------~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTT------TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp CSSCCSCCEECSSSSEEECC------CSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred CCCcEEEEEECCCCCEEEEe------cCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34578889998877655533 34589999999988 77888999999999999999999999999999999999
Q ss_pred CCCcc---eeeeeeecC--ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEE
Q 019603 146 LRVNA---CQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 220 (338)
Q Consensus 146 ~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~ 220 (338)
++.++ ....+..+. ...+.|+|++..+++++.|+.|++||++..........+...|...|.++.|+|+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 98876 333333333 2457899999999999999999999987643211222222238889999999999999999
Q ss_pred EecCCcEEEEEccCCe----------------eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe---
Q 019603 221 TTTNNNIYVLDAYGGE----------------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE--- 281 (338)
Q Consensus 221 ~~~d~~i~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~--- 281 (338)
++.|+.|++||+...+ ......+ .|...+.+++|+|++++|++++.||.|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 9999999999985221 1122223 6778899999999999999999999999999999887
Q ss_pred -EeEeeCCCCceEEEEEcCCCceEEeecc-eEEEeeeC
Q 019603 282 -VACWNGNIGVVACLKWAPRRAMFVAASS-VLSFWIPN 317 (338)
Q Consensus 282 -~~~~~~h~~~v~~l~~~p~~~~l~s~s~-~~~iw~~~ 317 (338)
+..+.+|.+.|.+++|+|++++|++++. .+.+|...
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 7889999999999999999999999973 45566544
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.2e-32 Score=247.76 Aligned_cols=254 Identities=13% Similarity=0.175 Sum_probs=206.9
Q ss_pred cceeeccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCC-------eeEeEEeecccCeeeEEEeecCCeeEEecCc
Q 019603 19 MAAIFSDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSA-------KLIKTTYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
....+.+|.+.|++++|+| ++++|++|+.|++|++||+.++ +.+..+..|...+.+++|+++....+.+.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-- 150 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-- 150 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE--
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE--
Confidence 4556789999999999999 8999999999999999999987 55667777888899999987764333322
Q ss_pred cCCCCCceeEEEEccCCeEEEee--cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeee-eecC---ccEEE
Q 019603 91 NLDSTGESLRYLSMYDNRILRYF--KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL-RLRG---RPTVA 164 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~--~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~-~~~~---~~~~~ 164 (338)
+.++.+++||+.+++.+..+ .+|.+.|++++|+|++++|++|+.|+.|++||+++++....+ ..+. ...+.
T Consensus 151 ---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 151 ---GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp ---ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred ---cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence 23488999999999999999 899999999999999999999999999999999999887766 3333 24588
Q ss_pred EcCCCCEEEEE---EcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCee-EE
Q 019603 165 FDQQGLVFAVA---MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEK-RC 239 (338)
Q Consensus 165 ~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~-~~ 239 (338)
|+|++.+++++ +.|+.|++||++.... +.... ...+...+..+.|+|+++++++++ .|+.|++|+..+++. ..
T Consensus 228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~ 305 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSERQVALWDTKHLEE-PLSLQ-ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLH 305 (402)
T ss_dssp ECSTTEEEEEEECTTCCEEEEEEETTBCSS-CSEEE-ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEE
T ss_pred EcCCCcEEEEeccCCCCceEEEEcCccccC-CceEE-eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceE
Confidence 99999999998 7899999999886443 22222 224567799999999999987655 699999999987763 33
Q ss_pred EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 240 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
.+....+...+.+++|+|++.++++ .|+.+++|++.+++.
T Consensus 306 ~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 306 YLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred eecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 4444446678999999999999865 567999999987654
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-32 Score=246.73 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=188.6
Q ss_pred eeeccCCcceeEEEeecCCCEEEE-----------eeCCCcEEEEEcCCCee-EeEEee--------cccCeeeEEEeec
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVT-----------ASDDDSVRLYDIVSAKL-IKTTYH--------KKHGADCVCFTHH 80 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s-----------~s~D~~i~iWd~~~~~~-~~~~~~--------~~~~~~~~~~~~~ 80 (338)
..|.+|...|.+++++ ++.+++ ++.|+++|+|++..... +..... ....+.+++|+++
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4577899999988775 445554 45688899999865432 111111 1123567899988
Q ss_pred CCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee--ec
Q 019603 81 PSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LR 158 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~ 158 (338)
+..++.++. +.+++|++||+.+++++..+. |...|.+++|+|+++++++++.|+ +++|+..+++...... .+
T Consensus 145 g~~la~as~----~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 145 GTVAAIASS----KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp SSCEEEEES----CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCT
T ss_pred CCEEEEEEC----CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCC
Confidence 877765542 345899999999999988875 888999999999999999998655 6666666665543222 22
Q ss_pred Cc--cEEEEcCCCCEEEEEEcCC----eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEc
Q 019603 159 GR--PTVAFDQQGLVFAVAMEAG----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 159 ~~--~~~~~~~~~~~~~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~ 232 (338)
.. ..++|+|++..+++++.|+ .+++|+.+...........+.+|...|++++|+|+|+++++++.|+.|+|||.
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 22 3578999999999998887 68888876533222223345678889999999999999999999999999999
Q ss_pred cCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 233 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.+++....+ ..+|...|++++|||||++|||||.|++||||++..
T Consensus 299 ~~~~~~~~~-~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KDLSMSKIF-KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTTEEEEEE-TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCcEEEEe-cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 988765432 356888999999999999999999999999999964
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-31 Score=241.99 Aligned_cols=242 Identities=18% Similarity=0.247 Sum_probs=190.2
Q ss_pred ccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecc---cCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 24 SDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKK---HGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 24 ~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
.+|.+.|++++|+| ++++|++++.|++|++||+... .+..+..+. ..+.+++|++++..++.++ .++.+
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i 187 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD------STGRL 187 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEE------TTSEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEEC------CCCCE
Confidence 47999999999999 7899999999999999999864 444443332 5588888888777665543 34899
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCC----cceeeeeeec-CccEEEEcC-CCCEE
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRV----NACQGILRLR-GRPTVAFDQ-QGLVF 172 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~----~~~~~~~~~~-~~~~~~~~~-~~~~~ 172 (338)
++|++ +++.+..+.+|...|.+++|+|+++ +|++|+.|++|++||+++ +.+...+... ....+.|+| ++.++
T Consensus 188 ~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 266 (383)
T 3ei3_B 188 LLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKL 266 (383)
T ss_dssp EEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEE
T ss_pred EEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEE
Confidence 99999 6778889999999999999999998 899999999999999987 4555444322 234588999 99999
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEec-----CC----------CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVG-----GD----------TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 237 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~----------~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~ 237 (338)
++++.|+.|++||++...... .+... .+ ...+..+.|+|++++ +++.|+.|++||..+++.
T Consensus 267 ~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EEEESSSEEEEEETTBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred EEEcCCCcEEEEECCCCcccc--ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 999999999999988654321 11110 11 123445666777766 667899999999999988
Q ss_pred EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 238 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 238 ~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
...+..+.+...+..++|+|++++|++|+ ||.|++||+++
T Consensus 343 ~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 343 VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77776665666777789999999999997 99999999974
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-31 Score=238.32 Aligned_cols=250 Identities=12% Similarity=0.215 Sum_probs=202.4
Q ss_pred eeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc--CCeEEEeecCCccceEEEEEcCC--CCEEEEE
Q 019603 60 KLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY--DNRILRYFKGHKERVISLCMSPV--NDSFMSG 135 (338)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~H~~~V~~l~~~~~--~~~l~Sg 135 (338)
+++..+.+|...+.+++|++++..+++++ .++.+++|++. +++.+..+.+|...|++++|+++ +++|++|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCS------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEE------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEE------CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence 44556678888999999998877666543 24889999998 56778889999999999999987 8999999
Q ss_pred ECCCeEEEEECCCcc--eeeeeeecC--ccEEEEcCC--CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEE
Q 019603 136 SLDHSVRIWDLRVNA--CQGILRLRG--RPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 209 (338)
Q Consensus 136 s~D~~I~iWd~~~~~--~~~~~~~~~--~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v 209 (338)
+.|+.|++||++.++ ....+..+. ...+.|+|+ +..+++++.|+.|++||++.... .......+|...|.++
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSA 153 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--CCEEEEECCTTCEEEE
T ss_pred ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--eeeEEecCCCCceEEE
Confidence 999999999999886 333443333 345889998 89999999999999999886532 2233455788899999
Q ss_pred EEcC-------------CCCEEEEEecCCcEEEEEccCCeeE--EEeeeCCCCCCCeeEEECCC---CCEEEEEcCCCcE
Q 019603 210 KFSN-------------DGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPD---GQYVVSGSGDGTL 271 (338)
Q Consensus 210 ~~sp-------------~~~~i~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~fs~~---~~~l~sgs~Dg~i 271 (338)
.|+| ++.++++++.|+.|++||+..+... .......|...+.+++|+|+ +++|++++.||.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 9999 6899999999999999998766432 33455677888999999999 8999999999999
Q ss_pred EEEECCCCC---eEeE--eeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 272 HAWNINTRN---EVAC--WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 272 ~vWd~~~~~---~~~~--~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
++||+.++. .... ...|.+.|++++|+|++++|++++ +.+++|...
T Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 999998764 2222 235889999999999999999886 579999765
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-31 Score=236.07 Aligned_cols=260 Identities=13% Similarity=0.117 Sum_probs=211.9
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCC
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
....++..+.+|.+.|++++|+|++++|++++.|++|++||+.+++.+..+. +...+..++|++++..++++.. ....
T Consensus 62 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-~~~~ 139 (369)
T 3zwl_B 62 LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILD-NVMK 139 (369)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEEC-CBTT
T ss_pred CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecC-CccC
Confidence 3456778889999999999999999999999999999999999999887766 5667888888887776665433 1223
Q ss_pred CCceeEEEEccCCe-----------EEEeecCCcc--ceEEEEEcCCCCEEEEEECCCeEEEEECCC-cceeeeeeecCc
Q 019603 95 TGESLRYLSMYDNR-----------ILRYFKGHKE--RVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGILRLRGR 160 (338)
Q Consensus 95 ~~~~i~~~~~~~~~-----------~~~~~~~H~~--~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-~~~~~~~~~~~~ 160 (338)
.++.+++|++.... ....+..|.. .|.+++|+|++++|++|+.|+.|++||+++ .+....+..+..
T Consensus 140 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 219 (369)
T 3zwl_B 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK 219 (369)
T ss_dssp BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS
T ss_pred CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC
Confidence 34789999997653 3445566777 999999999999999999999999999998 566666665443
Q ss_pred --cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC-------------
Q 019603 161 --PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN------------- 225 (338)
Q Consensus 161 --~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~------------- 225 (338)
..+.|+|++..+++++.|+.|++||++.... ... . .+...+..+.|+|+++++++++.++
T Consensus 220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV--LKK--Y-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEE--E-ECSSCEEEEEECSSSSEEEEEECCC-------------
T ss_pred ceeEEEECCCCCEEEEecCCceEEEEECCCCce--eee--e-cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 4588999999999999999999999876432 111 1 2567799999999999999999888
Q ss_pred -cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEe
Q 019603 226 -NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 283 (338)
Q Consensus 226 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~ 283 (338)
.+++|+..+++....+ ..|...+.+++|+|++++|++++.||.|++|++.++....
T Consensus 295 ~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRV--QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp CEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred ceeEEEecCCCcchhhe--ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 8999999888766544 4566789999999999999999999999999998754433
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-32 Score=241.98 Aligned_cols=263 Identities=10% Similarity=0.128 Sum_probs=189.6
Q ss_pred EeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc--------
Q 019603 34 DFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY-------- 105 (338)
Q Consensus 34 ~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------- 105 (338)
.+.+++.+|+||+.|++|++||+.+++.+..+. ...+..+.+++ . ++.+ +.++++++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~--~-~~s~------s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP--A-IISR------GPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC--S-EEEE------CSTTEEEEEETTTEEEEEET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC--c-eEEe------cCCCeEEEEEccCceEEeec
Confidence 345678899999999999999999998776654 23344444433 3 3322 334778888654
Q ss_pred -CCeEEEeec-CCccceEEEEEcC--CCCEEEEEECCCeEEEEECCCcceeeeeeec---CccEEEEcCCCCEEEEEEcC
Q 019603 106 -DNRILRYFK-GHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQQGLVFAVAMEA 178 (338)
Q Consensus 106 -~~~~~~~~~-~H~~~V~~l~~~~--~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d 178 (338)
+++.++.+. +|.+.|.+++|+| ++++++||+.|++|++||++++++......+ ....++|+|++.++++|+.|
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence 555454444 7889999999999 9999999999999999999998875544322 23568999999999999999
Q ss_pred CeEEEEeCCCCCCCCCeeEEecC-CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee-CCCCCCC--eeEE
Q 019603 179 GAIKLFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTN--TEAT 254 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~--~~~~ 254 (338)
|.|++||+++.... ...+.+ |...|.++.|+|++.++++++ ++.|++||++.++....+.. ..+...+ .+++
T Consensus 192 g~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 192 GILDVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp SCEEEEESSCTTSC---CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred CEEEEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 99999999875431 122334 889999999999999999998 56999999987754332221 1122223 3599
Q ss_pred ECCCCCEEEEEcC-CCcEEEEECCCCCeEeEeeCCCCceEEEEEcC---CCceEEeec--ceEEEee
Q 019603 255 FTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNGNIGVVACLKWAP---RRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 255 fs~~~~~l~sgs~-Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p---~~~~l~s~s--~~~~iw~ 315 (338)
|+|+|++|++++. |+.|+||++.+....... ..+..++|+| +...+++++ +.+.++.
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 9999999999988 999999999765433222 4567777777 666666665 4455553
No 98
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.9e-32 Score=249.67 Aligned_cols=247 Identities=15% Similarity=0.121 Sum_probs=170.3
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
|.+.+....+++++.+|++|+.|++|+|||..++.....
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~----------------------------------------- 126 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ----------------------------------------- 126 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEE-----------------------------------------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee-----------------------------------------
Confidence 444444455556677899999999999999876654311
Q ss_pred CCeEEEeecCCccceEEEEEcC--------CCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCC-EEEE
Q 019603 106 DNRILRYFKGHKERVISLCMSP--------VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGL-VFAV 174 (338)
Q Consensus 106 ~~~~~~~~~~H~~~V~~l~~~~--------~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 174 (338)
..+..+.||++.|++++|+| ++++|+|||.|++|||||++++.+...+..+.. ..++|+|++. ++++
T Consensus 127 --~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 204 (393)
T 4gq1_A 127 --HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV 204 (393)
T ss_dssp --EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred --eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe
Confidence 01233678999999999997 788999999999999999988766554444333 4588999874 8999
Q ss_pred EEcCCeEEEEeCCCCCCCCC---------------------eeEEecCCCCceEEEEEc-CCCCEEEEEecCCcEEEEEc
Q 019603 175 AMEAGAIKLFDSRSYDKGPF---------------------DTFLVGGDTAEVCDIKFS-NDGKSMLLTTTNNNIYVLDA 232 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~---------------------~~~~~~~~~~~i~~v~~s-p~~~~i~~~~~d~~i~i~~~ 232 (338)
++.|+.|++||++....... ......++...+.++.|+ |+++.+++++.|+.+++||+
T Consensus 205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~ 284 (393)
T 4gq1_A 205 GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNL 284 (393)
T ss_dssp EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence 99999999999876432100 001123566678888886 89999999999999999998
Q ss_pred cCCeeEEEeeeCC----------------CCCCCeeEEECC--CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEE
Q 019603 233 YGGEKRCGFSLEP----------------SPNTNTEATFTP--DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC 294 (338)
Q Consensus 233 ~~~~~~~~~~~~~----------------~~~~~~~~~fs~--~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~ 294 (338)
..+.....+..+. .........|+| ++.++++|+.||.|++||+.+++++..+.+|...|++
T Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s 364 (393)
T 4gq1_A 285 FANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD 364 (393)
T ss_dssp -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred ccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE
Confidence 7665433222110 011222334544 4457788999999999999999998888899999999
Q ss_pred EEEcCCCceEEeecc-eEEEee
Q 019603 295 LKWAPRRAMFVAASS-VLSFWI 315 (338)
Q Consensus 295 l~~~p~~~~l~s~s~-~~~iw~ 315 (338)
|+|||||++||+++. .+.+|.
T Consensus 365 vafspdG~~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 365 FCWHQDGSHLAIATEGSVLLTR 386 (393)
T ss_dssp EEECTTSSEEEEEESSEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEE
Confidence 999999999999984 455553
No 99
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.4e-31 Score=237.37 Aligned_cols=244 Identities=12% Similarity=0.149 Sum_probs=203.1
Q ss_pred ecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe--EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEE
Q 019603 67 HKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR--ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 144 (338)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iW 144 (338)
.+...+.+++|++++..++.++ .++.+++|++.+++ .+..+.+|...|++++|+|++++|++|+.|+.|++|
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICP------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEEC------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEe------CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 3556788889988776665442 35899999999987 888999999999999999999999999999999999
Q ss_pred ECCCcceeeeeee--cC--ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEE
Q 019603 145 DLRVNACQGILRL--RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 220 (338)
Q Consensus 145 d~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~ 220 (338)
|++.++....+.. +. ...+.|+|++.++++++.|+.+++||++.............+|...|.++.|+|+++++++
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 9988875544432 22 3458899999999999999999999987643211122333567889999999999999999
Q ss_pred EecCCcEEEEEcc------------------CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Q 019603 221 TTTNNNIYVLDAY------------------GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 282 (338)
Q Consensus 221 ~~~d~~i~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~ 282 (338)
++.|+.+++||.. .++... ....|...+.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheE--ecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 9999999999953 344433 34466778999999999999999999999999999999999
Q ss_pred eEeeCCCCceEEEEEcCCCceEEeec-ceEEEeeeCC
Q 019603 283 ACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 318 (338)
Q Consensus 283 ~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw~~~~ 318 (338)
..+..|...|.+++|+|++.++++++ +.+++|....
T Consensus 238 ~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 238 ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 99999999999999999999999886 5799998765
No 100
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=240.06 Aligned_cols=252 Identities=11% Similarity=0.133 Sum_probs=198.4
Q ss_pred ccCCcceeEEEeecC---CCEEEEeeCCCcEEEEEcCCCe-eEeEEeecccCeeeEEEe------ecCCeeEEecCccCC
Q 019603 24 SDFGGKINSLDFHRK---DDLLVTASDDDSVRLYDIVSAK-LIKTTYHKKHGADCVCFT------HHPSSVICSTKYNLD 93 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~---~~~l~s~s~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 93 (338)
.+|.++|++++|+|+ +++|++|+.|+.|++||+.+++ .+..+..+...+.++.+. +++..++.+
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~------ 135 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG------ 135 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEE------
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEE------
Confidence 389999999999998 6999999999999999999887 777777777788888653 344444433
Q ss_pred CCCceeEEEEccCCe-EEEeecCCcc----ceEEEE----EcCCCCEEEEEECCCeEEEEECCCcceeeeeeec-CccEE
Q 019603 94 STGESLRYLSMYDNR-ILRYFKGHKE----RVISLC----MSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTV 163 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~-~~~~~~~H~~----~V~~l~----~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~ 163 (338)
+.++.+++|++.+++ .+..+..|.+ .|.++. |+|++++|++|+.|+.|++||+++++........ ....+
T Consensus 136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~ 215 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSL 215 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEE
Confidence 234889999999876 6777766655 899998 7889999999999999999999988874433322 23458
Q ss_pred EEcC---CCCEEEEEEcCCeEEEEeCCCCCCCC-CeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCee-
Q 019603 164 AFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGP-FDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEK- 237 (338)
Q Consensus 164 ~~~~---~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~- 237 (338)
.|+| ++..+++++.||.|++||++...... +......+|...|.++.|+|+++ ++++++.|+.|++|++..+..
T Consensus 216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 8999 89999999999999999987643211 11112347888999999999998 789999999999999875432
Q ss_pred ----------------EEEeeeCCCCCCCeeEEECCCCCEEE-EEcCCCcEEEEECCCCCe
Q 019603 238 ----------------RCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 238 ----------------~~~~~~~~~~~~~~~~~fs~~~~~l~-sgs~Dg~i~vWd~~~~~~ 281 (338)
........|...+.+++|+|++++|+ |++.||.|++||+.+.+.
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 23345566778899999999999998 899999999999987654
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-30 Score=227.08 Aligned_cols=243 Identities=17% Similarity=0.241 Sum_probs=190.5
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
+.+|.+.|++++|+|++++|+||+.|++|++||+++++++.....+...+. +++..+..++.++ .++.+++|
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~--~~~~~~~~l~s~~------~~~~~~~~ 134 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYILSSGS------RSGHIHHH 134 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE--EEEEETTEEEEEE------TTSEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE--EeecCCCEEEEEe------cCCceEee
Confidence 357889999999999999999999999999999999999888776655444 4555555544432 34778888
Q ss_pred EccCC-eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeee----eeecC--ccEEEEcCCCC-EE--
Q 019603 103 SMYDN-RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI----LRLRG--RPTVAFDQQGL-VF-- 172 (338)
Q Consensus 103 ~~~~~-~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~----~~~~~--~~~~~~~~~~~-~~-- 172 (338)
+.... ..+..+.+|...+..+.+.++++++++++.|++|++||+++++.... ...+. ...+.+.+.+. .+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred ecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence 88764 56778899999999999999999999999999999999987754221 11111 23456676554 33
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe--cCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
++++.++.|++||.+.... .....+...+..+.|+|++..+++++ .|+.|++||..+++.+.. +.+|...|
T Consensus 215 ~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--l~gH~~~V 287 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRV 287 (318)
T ss_dssp EECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCCSSCE
T ss_pred EecCCCCEEEEEecccccc-----cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--EcCCCCCE
Confidence 4567889999999875331 12224566789999999999888765 689999999998887654 45677899
Q ss_pred eeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 251 TEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
++++|+|+|++|+|||.||+|+|||+.+..
T Consensus 288 ~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 288 LSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999999999997643
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-31 Score=247.20 Aligned_cols=249 Identities=17% Similarity=0.239 Sum_probs=180.6
Q ss_pred ceeeccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc--CeeeEEEeecCCeeEEecCccCCCCC
Q 019603 20 AAIFSDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH--GADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
...+.+|.+.|++|+|+| ++.+|+|||.|++|++||++++........+.. .+.++.+++++..++++ +.+
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g------~~d 230 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTG------DNV 230 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEE------CSS
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEE------eCC
Confidence 345679999999999998 688999999999999999987655433333333 34566676666555543 235
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeee---ecC--ccEEEEcCCCC
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILR---LRG--RPTVAFDQQGL 170 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~---~~~--~~~~~~~~~~~ 170 (338)
+.|++||+. ++.+..+.+|.+.|++++|+|+++ +|++|+.|++|++||++..+....+. .+. ...++|+|+|.
T Consensus 231 g~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 309 (435)
T 4e54_B 231 GNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309 (435)
T ss_dssp SBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS
T ss_pred CcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC
Confidence 889999986 456778899999999999999876 78899999999999998776543332 222 23477899999
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC------CCceEEEEEcCCCCEEEEEec------------CCcEEEEEc
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD------TAEVCDIKFSNDGKSMLLTTT------------NNNIYVLDA 232 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~v~~sp~~~~i~~~~~------------d~~i~i~~~ 232 (338)
++++++.|+.|++||++..... .. ...| ......+.|+|++..+++++. ++.|++||.
T Consensus 310 ~l~s~~~D~~i~iwd~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~ 385 (435)
T 4e54_B 310 RLLTTDQKSEIRVYSASQWDCP---LG-LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG 385 (435)
T ss_dssp EEEEEESSSCEEEEESSSSSSE---EE-ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred eeEEEcCCCEEEEEECCCCccc---eE-EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence 9999999999999998865421 11 1111 112233456776666665542 346999999
Q ss_pred cCCeeEEEeeeCCCCCCCeeE-EECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 233 YGGEKRCGFSLEPSPNTNTEA-TFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~-~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
.+++....+. .+|...+.++ +|+|+|++|++|+ |+.|+|||+.+++.
T Consensus 386 ~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 386 NSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 8887765443 3455667776 6999999999986 78999999998764
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5e-31 Score=243.26 Aligned_cols=263 Identities=17% Similarity=0.272 Sum_probs=198.7
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
..+....+.+|.+.|++++| ++++|++|+.|++|++||+.+++.+..+..+...+.++.++ +..++.++ .
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s------~ 231 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCS------K 231 (435)
T ss_dssp SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEE------T
T ss_pred CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEee------C
Confidence 44567788999999999999 78999999999999999999999988888777777777764 44444432 3
Q ss_pred CceeEEEEccCCeEE---EeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEE
Q 019603 96 GESLRYLSMYDNRIL---RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF 172 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~---~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (338)
++.+++|++.+++.. ..+.+|...|.++.| +++++++|+.|++|++||++++++...+..+.....++..++..+
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l 309 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLV 309 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEE
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEE
Confidence 589999999887654 678899999999999 678999999999999999999998888877666655555578899
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee-------EEEeeeCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-------RCGFSLEP 245 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~-------~~~~~~~~ 245 (338)
++++.||.|++||+++... .....+|...|.++.| +++++++++.|+.|++||...+.. ........
T Consensus 310 ~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 383 (435)
T 1p22_A 310 VSGSSDNTIRLWDIECGAC----LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 383 (435)
T ss_dssp EEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred EEEeCCCeEEEEECCCCCE----EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC
Confidence 9999999999999886432 2345678889999988 788999999999999999865431 02334567
Q ss_pred CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcC
Q 019603 246 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 299 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p 299 (338)
|...+++++| ++.+|++|+.||.|++||+.+........ ......++.|.+
T Consensus 384 h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 434 (435)
T 1p22_A 384 HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYIS 434 (435)
T ss_dssp CSSCCCCEEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeeec
Confidence 7788999999 78899999999999999998765544332 224455555544
No 104
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.5e-31 Score=229.98 Aligned_cols=206 Identities=15% Similarity=0.288 Sum_probs=169.1
Q ss_pred EeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeeeeeecCcc--EEEEcC--CCCEEEEEEcCCeEEEE
Q 019603 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRP--TVAFDQ--QGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~--~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~dg~i~i~ 184 (338)
..+.+|.+.|++++|+|++++|+|||.|++|++||+..+ ++...+..|..+ .+.|++ ++.++++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 346799999999999999999999999999999999643 455566655544 467765 38899999999999999
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCC--CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC----
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD---- 258 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~---- 258 (338)
|++....... ....+|...|.++.|+|+ +.++++++.|+.|++|+...+..........|...+.+++|+|+
T Consensus 83 d~~~~~~~~~--~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 83 KEENGRWSQI--AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EBSSSCBCCC--EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EcCCCceEEE--EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 9876432222 234568889999999998 88999999999999999876533222345567778999999997
Q ss_pred ---------CCEEEEEcCCCcEEEEECCCCC----eEeEeeCCCCceEEEEEcCCC---ceEEeec--ceEEEeeeCC
Q 019603 259 ---------GQYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPRR---AMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 259 ---------~~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~h~~~v~~l~~~p~~---~~l~s~s--~~~~iw~~~~ 318 (338)
+++|++|+.|++|++||+++++ ....+.+|.+.|.+|+|+|++ .+||+++ ++++||....
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999998765 567889999999999999984 7899987 5799998764
No 105
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=6.2e-30 Score=223.50 Aligned_cols=300 Identities=14% Similarity=0.145 Sum_probs=197.7
Q ss_pred ccccCHHHHhccccceeeccCCcc----eeEEEeecCCC---EEEEeeCCCcEEEEEcCCC---eeEeEEeecccCeeeE
Q 019603 6 LAELDDETVRSMAMAAIFSDFGGK----INSLDFHRKDD---LLVTASDDDSVRLYDIVSA---KLIKTTYHKKHGADCV 75 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~h~~~----V~~l~~s~~~~---~l~s~s~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~ 75 (338)
++.-+.-...-+++++.|++-.+. |.++.|-..|- .+++++. .+|++|+..++ +++.++..+..+|..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~ 92 (356)
T 2w18_A 14 LPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQI 92 (356)
T ss_dssp ----------CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEE
T ss_pred CccccCcCcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEE
Confidence 333444555667788888877655 34566655443 6777775 78999999998 7888888887788888
Q ss_pred EEeecCCeeEEecCccCCCCCceeEEEEccCC----eEEEeecCCccceEEEEEcCCCCEEEEEE--CCCeEEEEEC-CC
Q 019603 76 CFTHHPSSVICSTKYNLDSTGESLRYLSMYDN----RILRYFKGHKERVISLCMSPVNDSFMSGS--LDHSVRIWDL-RV 148 (338)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs--~D~~I~iWd~-~~ 148 (338)
.+.++...++|.+-.++. .+.++..-.... .....-.+|...|.++ ++++.+.+++ .|++|++|++ ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~--~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~d 167 (356)
T 2w18_A 93 VPVPDVYNLVCVALGNLE--IREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAED 167 (356)
T ss_dssp CCCTTCCSCEEEEECSSS--EEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTT
T ss_pred EEcCcccceeeeeecccc--ccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCC
Confidence 887777777765432221 012222222111 1122224566667665 4555555533 6999999999 44
Q ss_pred cceeeeeeecC--ccEEEEcC---CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCC--CCceEEEEEcCCCCEE---
Q 019603 149 NACQGILRLRG--RPTVAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD--TAEVCDIKFSNDGKSM--- 218 (338)
Q Consensus 149 ~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~v~~sp~~~~i--- 218 (338)
++....+..++ ...++|++ ++..+++++.|++|+|||+++.+. +..+ ..++ ...++++.|+|+|+++
T Consensus 168 G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~--l~tL-~g~~~~v~~v~~vafSpdG~~lvs~ 244 (356)
T 2w18_A 168 GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL--LKKM-HIDDSYQASVCHKAYSEMGLLFIVL 244 (356)
T ss_dssp SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE--EEEE-ECCC---CCCEEEEEEETTEEEEEE
T ss_pred CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE--EEEE-cCCCcceeeeEEEEECCCCCEEEEe
Confidence 66666555544 45678887 779999999999999999987542 2222 2222 3467888999999876
Q ss_pred ---------EEEecCCcEEEEEccCCeeEEEeee---CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee
Q 019603 219 ---------LLTTTNNNIYVLDAYGGEKRCGFSL---EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 219 ---------~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~ 286 (338)
++++.|+++++||..+++....+.. .+|...+.+..+ ++.++++|+.|++|+|||+.+++++.+|+
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~ 322 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP 322 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec
Confidence 4566788999999998877654432 244333333333 48899999999999999999999999999
Q ss_pred CCCCceE-EEEEcCCCceEEeec--ceEEEeee
Q 019603 287 GNIGVVA-CLKWAPRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 287 ~h~~~v~-~l~~~p~~~~l~s~s--~~~~iw~~ 316 (338)
+|...+. +++|+||+++|++|+ .+|+||.+
T Consensus 323 gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 323 PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9987665 599999999999998 58999974
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=9.7e-30 Score=233.82 Aligned_cols=284 Identities=12% Similarity=0.149 Sum_probs=220.1
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEE-----eecccCeeeEEEeecCCeeEEecCccC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT-----YHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
.....+..+ +.+.+++|+|++.++++++.|++|++||+.+++.+... ..+...+..+++++++..++..
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~----- 187 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQ----- 187 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEE-----
T ss_pred eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEE-----
Confidence 344445444 45669999998888899999999999999998877532 2334456777776554433332
Q ss_pred CCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEE-EEEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCC
Q 019603 93 DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGL 170 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~ 170 (338)
+.++.+++|++.+++.+..+..|...+.+++|+|+++.+ ++++.|+.|++||+++++....+..... ..+.++|++.
T Consensus 188 -~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 266 (433)
T 3bws_A 188 -MQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGK 266 (433)
T ss_dssp -GGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSS
T ss_pred -CCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCC
Confidence 234789999999999999999999999999999999977 5666899999999998887666655443 3578999999
Q ss_pred EEEEEE--------cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEE-EEecCCcEEEEEccCCeeEEEe
Q 019603 171 VFAVAM--------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 171 ~~~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~-~~~~d~~i~i~~~~~~~~~~~~ 241 (338)
.++++. .|+.|++||++.... ... ..+...+..+.|+|++++++ +++.++.+++||..+++....+
T Consensus 267 ~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 267 ELYIAQFSASNQESGGGRLGIYSMDKEKL---IDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp EEEEEEEESCTTCSCCEEEEEEETTTTEE---EEE--EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCccccCCCeEEEEECCCCcE---Eee--ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 888877 588999999875321 111 12344688899999998665 4578899999999888766554
Q ss_pred eeCCCCCCCeeEEECCCCCEEEEEcC---------------CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEe
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVSGSG---------------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~sgs~---------------Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s 306 (338)
. +...+..++|+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|+++++++
T Consensus 342 ~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 342 P---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp E---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEE
T ss_pred c---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEE
Confidence 4 3356789999999999988876 579999999999998888774 57899999999998887
Q ss_pred ec---ceEEEeeeC
Q 019603 307 AS---SVLSFWIPN 317 (338)
Q Consensus 307 ~s---~~~~iw~~~ 317 (338)
++ ..+++|..+
T Consensus 418 ~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 418 SDFLDHQIRVYRRD 431 (433)
T ss_dssp EETTTTEEEEEEET
T ss_pred EECCCCeEEEEEec
Confidence 63 579999764
No 107
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-30 Score=224.05 Aligned_cols=248 Identities=14% Similarity=0.212 Sum_probs=198.0
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCC---eeEeEEeecccCeeeEEEeecCCeeEEecCccCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSA---KLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
......+..|.+.|++++|+|++++|++++.|+.|++|++... +.+..+..+...+.++.+ ++..++.++
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~----- 121 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGS----- 121 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEE-----
T ss_pred CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEe-----
Confidence 3456678899999999999999999999999999999998654 445566666667777776 455555432
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeeeee-cC--ccEEEEcCCC
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRL-RG--RPTVAFDQQG 169 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~-~~--~~~~~~~~~~ 169 (338)
.++.+++|+ .++....+.+|...|.++.|.| +++++++++.|+.|++||.. +....+.. +. ...+.++|++
T Consensus 122 -~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~ 196 (313)
T 3odt_A 122 -WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDG 196 (313)
T ss_dssp -TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETT
T ss_pred -CCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCC
Confidence 348999999 7788888999999999999988 88999999999999999943 33333433 22 3457889998
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
. +++++.|+.+++||++.... .....+|...+.++.|+|++ .+++++.|+.|++||..+++....+. .+...
T Consensus 197 ~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~ 268 (313)
T 3odt_A 197 H-FISCSNDGLIKLVDMHTGDV----LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--LPAIS 268 (313)
T ss_dssp E-EEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--CSSSC
T ss_pred e-EEEccCCCeEEEEECCchhh----hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe--ccCce
Confidence 8 88999999999999876431 23345788899999999999 58899999999999999887766554 44567
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~ 285 (338)
+.+++|+|+++ +++++.||.|++||+.+++.....
T Consensus 269 i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 269 IWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 99999999998 567999999999999987665443
No 108
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.4e-31 Score=242.71 Aligned_cols=264 Identities=13% Similarity=0.210 Sum_probs=203.3
Q ss_pred EeecCCCEEEEeeCCCcEEEEEcCCCeeEeEE-eecccCeeeEEEee-cCCeeEEecCccCCCCCceeEEEEccC---Ce
Q 019603 34 DFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT-YHKKHGADCVCFTH-HPSSVICSTKYNLDSTGESLRYLSMYD---NR 108 (338)
Q Consensus 34 ~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~ 108 (338)
.|+|+++.+++++ .|+. +++.+..+ .+|...+.+++|++ ++..++.++ .++++++|++.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s------~dg~v~vwd~~~~~~~~ 100 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGS------DQGVIKIWNLKEIIVGE 100 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE------TTSEEEEEEHHHHHTTC
T ss_pred hcCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEec------CCceEEEeECcccccCc
Confidence 3677888877766 4874 46777777 67778899999998 666665543 358999999976 43
Q ss_pred ---EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECC---CcceeeeeeecC------------ccE--EE--Ec
Q 019603 109 ---ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR---VNACQGILRLRG------------RPT--VA--FD 166 (338)
Q Consensus 109 ---~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~---~~~~~~~~~~~~------------~~~--~~--~~ 166 (338)
....+ +|...|++++|+|++++|++|+.|++|++||+. .+++......+. ... +. ++
T Consensus 101 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 101 VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence 22222 599999999999999999999999999999994 444443332221 111 22 45
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC--CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
+++..+++++.|+.|++||++.... . ..+.+ |...|.+++|+|+++++++++.|+.|++||+..++....+..
T Consensus 180 ~~~~~l~~~~~d~~i~iwd~~~~~~--~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 254 (437)
T 3gre_A 180 EEKSLLVALTNLSRVIIFDIRTLER--L--QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF- 254 (437)
T ss_dssp SSCEEEEEEETTSEEEEEETTTCCE--E--EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCee--e--EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-
Confidence 7899999999999999999986432 2 22333 678999999999999999999999999999998877665543
Q ss_pred CCCCCCeeEEEC----CCCCEEEEEcCCCcEEEEECCCCCeEeEeeC--------------------------CCCceEE
Q 019603 245 PSPNTNTEATFT----PDGQYVVSGSGDGTLHAWNINTRNEVACWNG--------------------------NIGVVAC 294 (338)
Q Consensus 245 ~~~~~~~~~~fs----~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~--------------------------h~~~v~~ 294 (338)
.+...+.+++|+ |++.+|++|+.||.|++||+.+++++..+.+ |.+.|++
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 344578888554 5688999999999999999999988887764 5566888
Q ss_pred EEEcCCCceEEeec--ceEEEeeeC
Q 019603 295 LKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 295 l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
++|+ ++++|++++ +.+++|...
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred EEEC-CceEEEecCCCCeEEEEECC
Confidence 9999 668899887 579999765
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=4.5e-30 Score=236.66 Aligned_cols=250 Identities=14% Similarity=0.213 Sum_probs=199.5
Q ss_pred eeeccCCcceeEEEeecC-CCEEEEeeCCCcEEEEEcCC----------CeeEeEEeecccCeeeEEEeecCCeeEEecC
Q 019603 21 AIFSDFGGKINSLDFHRK-DDLLVTASDDDSVRLYDIVS----------AKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~-~~~l~s~s~D~~i~iWd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
..+.+|.+.|++++|+|+ +.+|++++.|+.|++||+.+ ...+..+..|...+.+++|++.....+.+.
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~- 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA- 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE-
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE-
Confidence 455689999999999997 67999999999999999976 456666777777888999988766333322
Q ss_pred ccCCCCCceeEEEEccCCeE-------EEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCc---ceeeeeeec
Q 019603 90 YNLDSTGESLRYLSMYDNRI-------LRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVN---ACQGILRLR 158 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~-------~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~---~~~~~~~~~ 158 (338)
+.++.|++|++..+.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++.+ +....+..+
T Consensus 201 ----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 201 ----SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp ----CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred ----eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 3358999999987321 456779999999999999 5678999999999999999876 344445444
Q ss_pred C--ccEEEEcCCCC-EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccC
Q 019603 159 G--RPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYG 234 (338)
Q Consensus 159 ~--~~~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~ 234 (338)
. ...++|+|++. ++++++.||.|++||++.... +. ....+|...|.++.|+|+++ .+++++.|+.|++||+..
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~--~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KL--HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CS--EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-Ce--EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 3 34688999886 789999999999999986432 22 23346788999999999986 588888999999999875
Q ss_pred Cee------------EEEeeeCCCCCCCeeEEECCCCC-EEEEEcCCCcEEEEECCC
Q 019603 235 GEK------------RCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 235 ~~~------------~~~~~~~~~~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~ 278 (338)
... ...+...+|...+.+++|+|+++ +|++++.||.|+||++.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 211 23344556777899999999999 999999999999999974
No 110
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=7.7e-30 Score=231.76 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=187.9
Q ss_pred ccCCcceeEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCC---eeEEecCccCCCCCcee
Q 019603 24 SDFGGKINSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPS---SVICSTKYNLDSTGESL 99 (338)
Q Consensus 24 ~~h~~~V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i 99 (338)
.+|.+.|++++|+| ++.+|++++.|+.|++||+.+++.+.... ....+..+.+.+... .++.+ ..++.+
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v 168 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVG------TRGPKV 168 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEE------ESSSSE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEE------cCCCeE
Confidence 36999999999999 77899999999999999999998876655 345566667665432 33332 234789
Q ss_pred EEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcc-eeeee---------------eecC--c
Q 019603 100 RYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNA-CQGIL---------------RLRG--R 160 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~-~~~~~---------------~~~~--~ 160 (338)
++|++.+++.+..+.+|...|++++|+|+++ .|++|+.|+.|++||++.+. +...+ ..+. .
T Consensus 169 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp EEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred EEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 9999999999999999999999999999998 58999999999999998764 22222 1122 2
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCee-EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEE
Q 019603 161 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT-FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 239 (338)
Q Consensus 161 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~ 239 (338)
..++|+|++..+++++.|+.+++||++......... .........+........+..+++++.++.+++||..+++...
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 357899999999999999999999988644211100 0000111112222223345567888889999999999887765
Q ss_pred EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEE-eec--ceEEEeee
Q 019603 240 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV-AAS--SVLSFWIP 316 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s--~~~~iw~~ 316 (338)
.+ ..|...+++++|+|++++|++|+.||.|++||+.+++.+.....+.. ...++|...... +++ ..+++|..
T Consensus 329 ~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 329 ML--KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred ee--ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCC
Confidence 44 56677899999999999999999999999999999887765543322 233444333222 222 46889954
Q ss_pred C
Q 019603 317 N 317 (338)
Q Consensus 317 ~ 317 (338)
+
T Consensus 404 ~ 404 (408)
T 4a11_B 404 P 404 (408)
T ss_dssp -
T ss_pred c
Confidence 4
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.6e-29 Score=231.59 Aligned_cols=285 Identities=15% Similarity=0.285 Sum_probs=214.2
Q ss_pred CcceeEEEeecCC----------CEEEEeeC----CCcEEEEEcC--------------------------CCee-EeEE
Q 019603 27 GGKINSLDFHRKD----------DLLVTASD----DDSVRLYDIV--------------------------SAKL-IKTT 65 (338)
Q Consensus 27 ~~~V~~l~~s~~~----------~~l~s~s~----D~~i~iWd~~--------------------------~~~~-~~~~ 65 (338)
.-+..++.|.|+. .+|+.|+. .+.|.+.++. +++. ....
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 124 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK 124 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence 3567889998865 35666654 3567777542 1121 2233
Q ss_pred eecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC----------CeEEEeecCCccceEEEEEcCCCC-EEEE
Q 019603 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD----------NRILRYFKGHKERVISLCMSPVND-SFMS 134 (338)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~H~~~V~~l~~~~~~~-~l~S 134 (338)
..|...+.+++|++....++++. +.++.|++|++.. .+....+.+|...|++++|+|+++ +|++
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~-----~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATK-----TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEE-----CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EcCCCcEEEEEECCCCCcEEEEE-----CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 45566788888877533333322 3347899999986 567788899999999999999988 9999
Q ss_pred EECCCeEEEEECCCcce-------eeeeeecC--ccEEEEcC-CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCC
Q 019603 135 GSLDHSVRIWDLRVNAC-------QGILRLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA 204 (338)
Q Consensus 135 gs~D~~I~iWd~~~~~~-------~~~~~~~~--~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 204 (338)
|+.||+|++||++.+.. ...+..+. ...+.|+| ++.++++++.|+.|++||++....... ......|..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~ 278 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP-SHTVDAHTA 278 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC-SEEEECCSS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc-eeEeecCCC
Confidence 99999999999987322 12222333 34588999 678999999999999999987532111 122346788
Q ss_pred ceEEEEEcCCCC-EEEEEecCCcEEEEEccCC-eeEEEeeeCCCCCCCeeEEECCCCC-EEEEEcCCCcEEEEECCC---
Q 019603 205 EVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT--- 278 (338)
Q Consensus 205 ~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~--- 278 (338)
.|.++.|+|+++ .+++++.|+.|++||++.. .... .+..|...+.+++|+|+++ +|++++.||.|+|||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~--~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH--SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE--EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE--EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 999999999987 5788999999999999863 3333 3345667899999999995 699999999999999986
Q ss_pred -----------CCeEeEeeCCCCceEEEEEcCCCc-eEEeec--ceEEEeeeCCC
Q 019603 279 -----------RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 279 -----------~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s--~~~~iw~~~~~ 319 (338)
.+.+..+.+|.+.|++++|+|+++ ++++++ +.+++|.++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 366778889999999999999999 788876 57999987743
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=231.06 Aligned_cols=249 Identities=11% Similarity=0.205 Sum_probs=191.1
Q ss_pred ccccceeeccCC------------cceeEEEeecCC--CEEEEeeCCCcEEEEEcCCCeeEe------------------
Q 019603 16 SMAMAAIFSDFG------------GKINSLDFHRKD--DLLVTASDDDSVRLYDIVSAKLIK------------------ 63 (338)
Q Consensus 16 ~~~~~~~~~~h~------------~~V~~l~~s~~~--~~l~s~s~D~~i~iWd~~~~~~~~------------------ 63 (338)
++.....+.+|. +.|++++|+|++ .+|++++.|++|++||+.++....
T Consensus 70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~ 149 (447)
T 3dw8_B 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV 149 (447)
T ss_dssp CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC
T ss_pred ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc
Confidence 455678899998 889999999998 799999999999999997644321
Q ss_pred ---------------------E-EeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC-CeEEE-------ee
Q 019603 64 ---------------------T-TYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD-NRILR-------YF 113 (338)
Q Consensus 64 ---------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-------~~ 113 (338)
. ...|...+.+++|++++..++.+ .++.+++||+.. ++... .+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (447)
T 3dw8_B 150 TTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-------DDLRINLWHLEITDRSFNIVDIKPANM 222 (447)
T ss_dssp CSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-------CSSEEEEEETTEEEEEEEEEECCCSSG
T ss_pred cceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-------CCCeEEEEECCCCCceeeeeecccccc
Confidence 1 23456678888888876655542 248999999984 44444 36
Q ss_pred cCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcce----eeeeeec--------------CccEEEEcCCCCEEEE
Q 019603 114 KGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC----QGILRLR--------------GRPTVAFDQQGLVFAV 174 (338)
Q Consensus 114 ~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~----~~~~~~~--------------~~~~~~~~~~~~~~~~ 174 (338)
.+|...|++++|+|++ ++|++|+.|++|++||+++++. ...+..+ ....+.|+|+|.++++
T Consensus 223 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 223 EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence 7899999999999998 8999999999999999998875 4555544 3345889999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCC---------------ceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEE
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTA---------------EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 239 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---------------~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~ 239 (338)
++. +.|++||++.... +...+. +|.. .+..++|+|+++++++++.|+.|++||..+++...
T Consensus 303 ~~~-~~v~iwd~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 303 RDY-LSVKVWDLNMENR-PVETYQ--VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp EES-SEEEEEETTCCSS-CSCCEE--SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred eeC-CeEEEEeCCCCcc-ccceee--ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 999 9999999985221 222222 2321 12348999999999999999999999998876543
Q ss_pred EeeeC-------------------------------CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 240 GFSLE-------------------------------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 240 ~~~~~-------------------------------~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
+... .....+..++|+|++.+||+++.|+ +++|..+
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 379 -LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp -EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred -eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1111 2234578899999999999998876 8888753
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.4e-28 Score=219.18 Aligned_cols=259 Identities=15% Similarity=0.153 Sum_probs=205.7
Q ss_pred cccceeeccCCcceeEEEeecCCCEE-EEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLL-VTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
.+....+..|. .+.+++|+|+|++| ++++.|++|++||+.+++.+..+..+. .+..++|++++..++.+. ..
T Consensus 22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~-----~~ 94 (391)
T 1l0q_A 22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTN-----MA 94 (391)
T ss_dssp TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEE-----TT
T ss_pred CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEE-----CC
Confidence 34555666665 48999999999976 677799999999999999887766554 788888888777665442 23
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEE-EEEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEE-
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVF- 172 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~- 172 (338)
++.+++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+++++....+..+.. ..+.|+|++..+
T Consensus 95 ~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY 173 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred CCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEE
Confidence 478999999999988887755 468999999999977 7889999999999999888776665433 457899999876
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe---cCCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
+++..++.|++||++.... .. .. .+...+.++.|+|+++++++++ .++.|++||..+++....+... ..
T Consensus 174 ~~~~~~~~v~~~d~~~~~~---~~-~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~ 245 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSV---ID-TV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PD 245 (391)
T ss_dssp EEETTTTEEEEEETTTTEE---EE-EE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SS
T ss_pred EEeCCCCEEEEEECCCCeE---EE-EE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC---CC
Confidence 5677889999999876421 11 11 2345788999999999998888 6899999999888776655442 24
Q ss_pred CeeEEECCCCCEE-EEEcCCCcEEEEECCCCCeEeEeeCCCCc
Q 019603 250 NTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVACWNGNIGV 291 (338)
Q Consensus 250 ~~~~~fs~~~~~l-~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~ 291 (338)
+..++|+|+|++| ++++.|+.|++||+.+++.+..+..|...
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 6789999999987 67789999999999999998888776544
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=234.83 Aligned_cols=266 Identities=9% Similarity=0.076 Sum_probs=199.5
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCC
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
.+....+.+|.+.|++++|+|+| .|+.+++|+.+... +.+..+ ...+..++|++++..+.+++ .+
T Consensus 42 ~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~~~~~-~~~V~~vawSPdG~~LAs~s------~d 106 (588)
T 2j04_A 42 PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LLNSQP-VCYPRVCKPSPIDDWMAVLS------NN 106 (588)
T ss_dssp ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SSTTSC-SCCEEEEEECSSSSCEEEEE------TT
T ss_pred ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-EeecCC-CCcEEEEEECCCCCEEEEEe------CC
Confidence 44455668999999999999999 67777777754333 222233 56788999999888777654 34
Q ss_pred ceeEEEEccCCeEEEeecCCcc-----ceEEEEEcCCCCEEEEEECCCeEEEEECCCcce-------eeeeeec------
Q 019603 97 ESLRYLSMYDNRILRYFKGHKE-----RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-------QGILRLR------ 158 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~-----~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~-------~~~~~~~------ 158 (338)
+.+++|+..+ ++..+. |.. .|.+++|+|+|++|++|+.||+|++||++.+.. ..+++.+
T Consensus 107 g~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~ 183 (588)
T 2j04_A 107 GNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD 183 (588)
T ss_dssp SCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC
T ss_pred CcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc
Confidence 8899999543 666677 765 499999999999999999999999999988753 3444322
Q ss_pred CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE
Q 019603 159 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 238 (338)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~ 238 (338)
....++|+|+| +++++.|+.+++||+...........+..+|...|.+++|+ ++.+++++ +++|++|+..+++..
T Consensus 184 ~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~ 258 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS 258 (588)
T ss_dssp CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE
T ss_pred cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE
Confidence 23458999999 88899999999999865432111122224677889999999 57777776 699999998877653
Q ss_pred EEeeeCCCCCCCeeEEE--CCCCCEEEEEcCCCcEEEEECCC-----------------------CCeEeEeeCCCCceE
Q 019603 239 CGFSLEPSPNTNTEATF--TPDGQYVVSGSGDGTLHAWNINT-----------------------RNEVACWNGNIGVVA 293 (338)
Q Consensus 239 ~~~~~~~~~~~~~~~~f--s~~~~~l~sgs~Dg~i~vWd~~~-----------------------~~~~~~~~~h~~~v~ 293 (338)
.+.. +|...+..+.| +|+++.|+++++||+ ++|..+. ++....+++ ...|+
T Consensus 259 -~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~ 334 (588)
T 2j04_A 259 -SLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIH 334 (588)
T ss_dssp -EEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEE
T ss_pred -EEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEE
Confidence 2232 68888999999 999999999999999 9999741 011112222 45699
Q ss_pred EEEEcCCCceEEeecc
Q 019603 294 CLKWAPRRAMFVAASS 309 (338)
Q Consensus 294 ~l~~~p~~~~l~s~s~ 309 (338)
+++|+|||+.+|+++.
T Consensus 335 ~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 335 GISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEECTTSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEe
Confidence 9999999999999874
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1e-27 Score=217.30 Aligned_cols=262 Identities=13% Similarity=0.113 Sum_probs=207.2
Q ss_pred CEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccc
Q 019603 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKER 119 (338)
Q Consensus 40 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~ 119 (338)
.++++++.|++|++||+.+++++..+..+ ..+.+++|++++..++.+. ..++.+++||+.+++.+..+..|. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~-~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVAN-----AHSNDVSIIDTATNNVIATVPAGS-S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE-----GGGTEEEEEETTTTEEEEEEECSS-S
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEEC-----CCCCeEEEEECCCCeEEEEEECCC-C
Confidence 46888999999999999999988776655 3577888888777665432 124799999999999988887665 9
Q ss_pred eEEEEEcCCCCEEE-EEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEE-EEEEcCCeEEEEeCCCCCCCCCee
Q 019603 120 VISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVF-AVAMEAGAIKLFDSRSYDKGPFDT 196 (338)
Q Consensus 120 V~~l~~~~~~~~l~-Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~dg~i~i~d~~~~~~~~~~~ 196 (338)
+.+++|+|++++|+ +++.|+.|++||+++++....+..+.. ..++|+|++..+ +++..++.|++||++.... ..
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~ 152 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---IN 152 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE---EE
Confidence 99999999999774 666789999999999888766665443 458899999866 6777899999999875321 11
Q ss_pred EEecCCCCceEEEEEcCCCCEEE-EEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEc---CCCcEE
Q 019603 197 FLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLH 272 (338)
Q Consensus 197 ~~~~~~~~~i~~v~~sp~~~~i~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs---~Dg~i~ 272 (338)
.... ...+..+.|+|++++++ +++.++.|++||..+++....+.. ...+..++|+|+|++|++++ .|+.|+
T Consensus 153 -~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 153 -TVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp -EEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred -EEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 1222 34578999999999874 556788999999998876655442 34578899999999999988 699999
Q ss_pred EEECCCCCeEeEeeCCCCceEEEEEcCCCceE-Eeec--ceEEEeeeC
Q 019603 273 AWNINTRNEVACWNGNIGVVACLKWAPRRAMF-VAAS--SVLSFWIPN 317 (338)
Q Consensus 273 vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l-~s~s--~~~~iw~~~ 317 (338)
+||+.+++.+..+..|. .+.+++|+|+++.+ ++++ ..+++|...
T Consensus 228 ~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 99999999988888775 47899999999877 4544 578999754
No 116
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=8.2e-30 Score=225.37 Aligned_cols=205 Identities=17% Similarity=0.223 Sum_probs=162.1
Q ss_pred eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc--eeeeeeecCcc--EEEEcC--CCCEEEEEEcCCeEEEEe
Q 019603 112 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRP--TVAFDQ--QGLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 112 ~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~--~~~~~~~~~~~--~~~~~~--~~~~~~~~~~dg~i~i~d 185 (338)
.+.+|.+.|++++|+|++++|+|||.|++|++||++.+. +...+..|... .++|++ ++.++++++.|+.|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 357899999999999999999999999999999998764 34445555443 477865 488999999999999999
Q ss_pred CCCCCCCCCeeEEecCCCCceEEEEEcCC--CCEEEEEecCCcEEEEEccCCeeE-EEeeeCCCCCCCeeEEECCC----
Q 019603 186 SRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNTEATFTPD---- 258 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--~~~i~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~fs~~---- 258 (338)
++..... ......+|...|.+++|+|+ +.++++++.|+.|++|+...+... .......|...+.+++|+|+
T Consensus 88 ~~~~~~~--~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 88 EENGTWE--KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp CSSSCCC--EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred CCCCcce--EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 8754321 22345678889999999998 789999999999999998765322 22334567778899999998
Q ss_pred -------------CCEEEEEcCCCcEEEEECCCC---CeEeEeeCCCCceEEEEEcCCC----ceEEeec--ceEEEeee
Q 019603 259 -------------GQYVVSGSGDGTLHAWNINTR---NEVACWNGNIGVVACLKWAPRR----AMFVAAS--SVLSFWIP 316 (338)
Q Consensus 259 -------------~~~l~sgs~Dg~i~vWd~~~~---~~~~~~~~h~~~v~~l~~~p~~----~~l~s~s--~~~~iw~~ 316 (338)
+++|++|+.|+.|++||+... +++..+.+|.+.|++++|+|++ .+||+++ +++++|..
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 479999999999999999754 4677889999999999999987 7899987 57999976
Q ss_pred CC
Q 019603 317 NP 318 (338)
Q Consensus 317 ~~ 318 (338)
..
T Consensus 246 ~~ 247 (316)
T 3bg1_A 246 DD 247 (316)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=246.31 Aligned_cols=246 Identities=12% Similarity=0.212 Sum_probs=199.3
Q ss_pred EEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc--CCeEEEeecCCccceEEEEEcCC--CCEEEEEECCC
Q 019603 64 TTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY--DNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDH 139 (338)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~H~~~V~~l~~~~~--~~~l~Sgs~D~ 139 (338)
.+.+|...+.+++|++++..+++++ .++.|++|++. +++....+.+|.+.|++++|+|+ +++|++|+.||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~------~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCS------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEE------TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred ecccCcceeEEEEECCCCCeEEEEE------CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 3456777889999988777666543 34899999998 55778889999999999999988 89999999999
Q ss_pred eEEEEECCCcc--eeeeeeecCc--cEEEEcCC--CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcC
Q 019603 140 SVRIWDLRVNA--CQGILRLRGR--PTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 213 (338)
Q Consensus 140 ~I~iWd~~~~~--~~~~~~~~~~--~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp 213 (338)
+|++||+++++ ....+..+.. ..+.|+|+ +..+++++.||.|++||++...... .....+|...|.++.|+|
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECC
T ss_pred eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecC
Confidence 99999998876 3333433333 45889998 9999999999999999998653322 234457888999999999
Q ss_pred -------------CCCEEEEEecCCcEEEEEccCCee--EEEeeeCCCCCCCeeEEECCC---CCEEEEEcCCCcEEEEE
Q 019603 214 -------------DGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPD---GQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 214 -------------~~~~i~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~fs~~---~~~l~sgs~Dg~i~vWd 275 (338)
++.++++++.|+.|++||..++.. ........|...+++++|+|+ +++|++|+.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 588999999999999999877632 233455678889999999999 99999999999999999
Q ss_pred CCCCC-----eEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 276 INTRN-----EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 276 ~~~~~-----~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+.+++ ......+|.+.|++++|+|+++++++++ +.+++|...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 98764 3344457899999999999999999987 579999766
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.9e-29 Score=217.34 Aligned_cols=216 Identities=11% Similarity=0.199 Sum_probs=155.5
Q ss_pred CcceeEEEeecC----CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 27 GGKINSLDFHRK----DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 27 ~~~V~~l~~s~~----~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
.++|+.|+|+|+ ++++++++.+ +++|++.+++++.+. . ...++.|++|
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss-----------------------~---~g~d~~V~~~ 162 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS-----------------------G---TLSDQQVEVM 162 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE-----------------------S---SSTTCEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec-----------------------c---cCCCCcEEEE
Confidence 346677777777 7788887743 777887666554321 0 1124789999
Q ss_pred Ec-cCCeEEEeecCCccceEEEEEcC---CCCEEEEEECCCeEEEEECCCcceeeeeeecCc-----cEEEEcCCCCEE-
Q 019603 103 SM-YDNRILRYFKGHKERVISLCMSP---VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-----PTVAFDQQGLVF- 172 (338)
Q Consensus 103 ~~-~~~~~~~~~~~H~~~V~~l~~~~---~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~- 172 (338)
++ .+++.+..+.+|...++.++|+| +++.|+|||.|++|||||++++++++++..+.. ..++|+|+|..+
T Consensus 163 ~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv 242 (356)
T 2w18_A 163 TFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI 242 (356)
T ss_dssp EECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred EECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence 99 45888888899999999999999 678999999999999999999999888864332 245799998876
Q ss_pred -----------EEEEcCCeEEEEeCCCCCCCCCeeEE---ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE
Q 019603 173 -----------AVAMEAGAIKLFDSRSYDKGPFDTFL---VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 238 (338)
Q Consensus 173 -----------~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~ 238 (338)
++|+.|+++++||.++... +..+. ..+|...+.+..+ ++..+++++.|++|+|||+.+++..
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tgk~--l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l 318 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTTLS--VGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCT 318 (356)
T ss_dssp EEC------------CCEEEEEEETTTTEE--EEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEE
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCCEE--EEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 5678899999999875421 11111 1244444433333 3778899999999999999999877
Q ss_pred EEeeeCCCCCCCe-eEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 239 CGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 239 ~~~~~~~~~~~~~-~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
..+ .+|...+. .++|||||++|+||+.|++|||||+
T Consensus 319 ~tL--~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 319 ALL--PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEE--CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEe--cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 654 45544444 5899999999999999999999996
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-27 Score=221.34 Aligned_cols=238 Identities=11% Similarity=0.105 Sum_probs=190.4
Q ss_pred cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe---EEEeecC-------------------------------
Q 019603 70 HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR---ILRYFKG------------------------------- 115 (338)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~------------------------------- 115 (338)
+++.++.|++++..++++. ++.|++|++.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-------TTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence 4667778887776444332 3789999998887 5555543
Q ss_pred -----------------------CccceEEEEEcCCCCEE-EEEECCCeEEEEECC--Ccceeeeeee--cC--ccEEEE
Q 019603 116 -----------------------HKERVISLCMSPVNDSF-MSGSLDHSVRIWDLR--VNACQGILRL--RG--RPTVAF 165 (338)
Q Consensus 116 -----------------------H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~--~~~~~~~~~~--~~--~~~~~~ 165 (338)
|.+.|++++|+|++++| ++|+.|++|++||+. .+++...+.. +. ...++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence 44479999999999996 899999999999998 7777766652 22 346899
Q ss_pred cCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC---CCEEEEEecCCcEEEEEccCCeeEEEee
Q 019603 166 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 166 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---~~~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
+|++..+++++.+|.+++|++..............+|...|.++.|+|+ ++++++++.|+.|++||+.+++....+
T Consensus 158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~- 236 (450)
T 2vdu_B 158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW- 236 (450)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-
T ss_pred cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-
Confidence 9999999999999999999987654321011122357788999999999 999999999999999999887655432
Q ss_pred eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC-------------------------CCceEEEEE
Q 019603 243 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-------------------------IGVVACLKW 297 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-------------------------~~~v~~l~~ 297 (338)
..+|...+.+++|+ ++++|++|+.|+.|++||+.+++++..+..+ ...|.+|+|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 34677889999999 9999999999999999999999988888632 357899999
Q ss_pred cCCCceEEeec---ceEEEeee
Q 019603 298 APRRAMFVAAS---SVLSFWIP 316 (338)
Q Consensus 298 ~p~~~~l~s~s---~~~~iw~~ 316 (338)
+|+++++++++ ..+++|..
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEe
Confidence 99999998876 46999987
No 120
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=8.1e-28 Score=213.70 Aligned_cols=237 Identities=11% Similarity=0.079 Sum_probs=191.3
Q ss_pred eecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe---EEEeecCCccceEEEEEcCCCC-EEEEEECCCeE
Q 019603 66 YHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR---ILRYFKGHKERVISLCMSPVND-SFMSGSLDHSV 141 (338)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I 141 (338)
..|...+.+++|++++..+++++ .++.+++|++.+++ ....+.+|...|++++|+|+++ +|++|+.|+.|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~------~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITS------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEE------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEc------CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 35566788999998877666543 34899999998876 3455668999999999999999 99999999999
Q ss_pred EEEEC-CCcceeeeeee--cCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCC---------CCCCCCeeEEecCCCCceE
Q 019603 142 RIWDL-RVNACQGILRL--RGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRS---------YDKGPFDTFLVGGDTAEVC 207 (338)
Q Consensus 142 ~iWd~-~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~i~ 207 (338)
++||+ ..++. ..+.. +.. ..+.|+| +..+++++.|+.|++||++. ... ... . .+...+.
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~--~-~~~~~v~ 154 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNN--T-KVKNKIF 154 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSS--S-SSCCCEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe--eeE--E-eeCCceE
Confidence 99999 87765 23333 333 3578899 99999999999999999875 221 111 1 2567899
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEccC-CeeEEEeeeCCCCCCCeeEEECC-CCCEEEEEcCCCcEEEEECCCC------
Q 019603 208 DIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTR------ 279 (338)
Q Consensus 208 ~v~~sp~~~~i~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~fs~-~~~~l~sgs~Dg~i~vWd~~~~------ 279 (338)
++.|+|++ +++++.++.|++||+.. +..........+...+.+++|+| ++++|++++.||.|++|++...
T Consensus 155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99999987 89999999999999987 54333333445667899999999 9999999999999999999876
Q ss_pred CeEeEeeCCCC---------ceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 280 NEVACWNGNIG---------VVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 280 ~~~~~~~~h~~---------~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+....+..|.. .|.+++|+|++++|++++ +.+++|...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 78888888865 999999999999999987 579999765
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=2.2e-27 Score=210.25 Aligned_cols=256 Identities=14% Similarity=0.162 Sum_probs=175.0
Q ss_pred ccceeeccCCcceeEEEeec--CCCEEEEeeCCCcEEEEEcCCC---------eeEeEEeecccCeeeEEEeec--CCee
Q 019603 18 AMAAIFSDFGGKINSLDFHR--KDDLLVTASDDDSVRLYDIVSA---------KLIKTTYHKKHGADCVCFTHH--PSSV 84 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~D~~i~iWd~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~ 84 (338)
.....+.+|.+.|++++|+| ++++|++|+.|++|++||+.++ +.+..+..+...+..++|++. +..+
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 46677889999999999999 6999999999999999999876 456666677778888998887 5555
Q ss_pred EEecCccCCCCCceeEEEEccCCeEEEee-------------cCCccceEEEEEcCC---CCEEEEEECCCeEEEEECCC
Q 019603 85 ICSTKYNLDSTGESLRYLSMYDNRILRYF-------------KGHKERVISLCMSPV---NDSFMSGSLDHSVRIWDLRV 148 (338)
Q Consensus 85 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------~~H~~~V~~l~~~~~---~~~l~Sgs~D~~I~iWd~~~ 148 (338)
++++ .++.+++||+.+++.+..+ .+|...|.++.|+|+ +.++++++.|+.+.+|+...
T Consensus 128 ~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 201 (351)
T 3f3f_A 128 ACLG------NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 201 (351)
T ss_dssp EEEE------TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred EEec------CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence 5443 3489999999877643332 278999999999997 88999999999998888877
Q ss_pred cce--eeeeeecC--ccEEEEcCCC----CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEE
Q 019603 149 NAC--QGILRLRG--RPTVAFDQQG----LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 220 (338)
Q Consensus 149 ~~~--~~~~~~~~--~~~~~~~~~~----~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~ 220 (338)
++. ...+..+. ...+.|+|++ .++++++.||.|++||++....... .............++.......
T Consensus 202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 277 (351)
T 3f3f_A 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA----SEESLTNSNMFDNSADVDMDAQ 277 (351)
T ss_dssp SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc----cCCcccceeccCCCcccccccc
Confidence 664 33333333 2458899998 7999999999999999875322110 1111112222233333333333
Q ss_pred Eec----CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe
Q 019603 221 TTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 221 ~~~----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~ 285 (338)
+.. ...+.+|+....+ .......|...+++++|+|++++|++|+.||.|++|++.+++....+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 278 GRSDSNTEEKAELQSNLQVE--LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp -------------CCSEEEE--EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cccccccceeeeeccccccc--EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 322 2233344332222 33455677788999999999999999999999999999987655544
No 122
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=7.4e-27 Score=214.18 Aligned_cols=279 Identities=14% Similarity=0.175 Sum_probs=201.4
Q ss_pred CCcceeEEEeecCCC-EEEEee----CCC----cEEEEEc--CCCeeE--eEEeecccCeeeEEEeec------------
Q 019603 26 FGGKINSLDFHRKDD-LLVTAS----DDD----SVRLYDI--VSAKLI--KTTYHKKHGADCVCFTHH------------ 80 (338)
Q Consensus 26 h~~~V~~l~~s~~~~-~l~s~s----~D~----~i~iWd~--~~~~~~--~~~~~~~~~~~~~~~~~~------------ 80 (338)
+...++...|++.|. ++++|+ .|| +++|||+ .+++++ ..+..+...+..+++...
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345788888998876 666876 467 8999999 888876 335555544444333321
Q ss_pred --CCeeEEecCccCCCCC---ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCC---eEEEEECCCccee
Q 019603 81 --PSSVICSTKYNLDSTG---ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDH---SVRIWDLRVNACQ 152 (338)
Q Consensus 81 --~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~---~I~iWd~~~~~~~ 152 (338)
...++..+. ...+ +.+++||+.. ...+.+.+|...|.+++|+|++++|++++.|+ .|++||++++++.
T Consensus 141 ~~~~~l~~~s~---~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 141 AFRTRIAYVVQ---TNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp CTTCEEEEEEE---CSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred cCCCEEEEEEe---cCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence 333443332 1122 6899999974 45677788999999999999999999999986 9999999988775
Q ss_pred eeeeecC-ccEEEEcCCCCEEE-EEEcCCe--EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-C--
Q 019603 153 GILRLRG-RPTVAFDQQGLVFA-VAMEAGA--IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N-- 225 (338)
Q Consensus 153 ~~~~~~~-~~~~~~~~~~~~~~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-~-- 225 (338)
......+ ...+.|+|+|..++ +++.++. |++||+++... ..+..+...+..+.|+|+|+++++++.+ +
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-----EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 4332222 34588999999777 5555554 88899875321 2344566789999999999999988864 4
Q ss_pred cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC---CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc
Q 019603 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 226 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D---g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
.+++||..+++.. .+..+...+..++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+++
T Consensus 292 ~i~~~d~~~~~~~---~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 292 QVYKVNINGGAPQ---RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGT 366 (415)
T ss_dssp EEEEEETTSSCCE---ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSS
T ss_pred EEEEEECCCCCEE---EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCC
Confidence 6888898777533 223334467789999999999988764 58999999988764 566664 899999999999
Q ss_pred eEEeecc---eEEEeeeCC
Q 019603 303 MFVAASS---VLSFWIPNP 318 (338)
Q Consensus 303 ~l~s~s~---~~~iw~~~~ 318 (338)
+|++++. ...||.++.
T Consensus 367 ~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEEEEETTEEEEEEEET
T ss_pred EEEEEEcCCCccEEEEEEC
Confidence 9988863 234554443
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=5e-26 Score=204.38 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=172.9
Q ss_pred EEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEE
Q 019603 53 LYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF 132 (338)
Q Consensus 53 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l 132 (338)
||++.+.+.+.....+...+.+++|++++..++++. +..+++|+..+++....... ..+..+.+.++++.+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~-------~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILST-------LKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYV 73 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEEC-------SSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEc-------CCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEE
Confidence 566666666666667778899999998887665443 25689999987766554332 357778888888876
Q ss_pred -EEEECCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEE
Q 019603 133 -MSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 210 (338)
Q Consensus 133 -~Sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~ 210 (338)
++|+.|++|++||+++++++..+..... ..+.++++ .++++ .++.+++||++.... .+..+.. ....+.
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~-~~~~~~~-----~~~~~~ 144 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWK-RITDDIR-----FGGVCE 144 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCC-BSSCCEE-----EEEEEE
T ss_pred EEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCce-eeEEecc-----CCceEE
Confidence 6788899999999999988777664432 23556655 34443 478999999876411 1111111 334456
Q ss_pred EcCCCCEEEE--EecCCcEEEEEccCCeeE-------------E-EeeeCCCCCCCeeEEECCCCCEEEEEcCCCc-EEE
Q 019603 211 FSNDGKSMLL--TTTNNNIYVLDAYGGEKR-------------C-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHA 273 (338)
Q Consensus 211 ~sp~~~~i~~--~~~d~~i~i~~~~~~~~~-------------~-~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~-i~v 273 (338)
++| .++++ ++.++.|++||+.++... . ...+.+|...+.+++|+|+|++|+||+.||+ |++
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 777 56666 467899999999875410 0 2345678889999999999999999999998 999
Q ss_pred EECCCCCeEeEee-C-CCCceEEEEEcCCCceEEeec--ceEEEeeeCCC
Q 019603 274 WNINTRNEVACWN-G-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 274 Wd~~~~~~~~~~~-~-h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~ 319 (338)
||+.+++++..+. + |.+.|++++|+|++++|++++ +++++|.....
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 9999999999998 5 999999999999999999997 57999987644
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=8.2e-26 Score=207.60 Aligned_cols=243 Identities=13% Similarity=0.179 Sum_probs=196.5
Q ss_pred eeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
.+.+|.+.|++++|+|++.++++++.|+.|++||+.+++.+..+..+...+..++|++++..++.+. ..++.+++
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~i~~ 238 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN-----WISEDISV 238 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE-----TTTTEEEE
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe-----cCCCcEEE
Confidence 4568999999999999999999999999999999999988887777777788889988777665443 23479999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEE--------CCCeEEEEECCCcceeeeeeec-CccEEEEcCCCC-E
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGS--------LDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGL-V 171 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs--------~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 171 (338)
||+.+++.+..+..+ ..+.+++|+|+++++++++ .|+.|++||+++++....+... ....++|+|++. +
T Consensus 239 ~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 239 IDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp EETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEE
T ss_pred EECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEE
Confidence 999999988888765 4589999999999999888 5899999999988776555332 234588999997 5
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec---------------CCcEEEEEccCCe
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---------------NNNIYVLDAYGGE 236 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~---------------d~~i~i~~~~~~~ 236 (338)
++++..++.+++||.+.... . . .+ .+...+..+.|+|+++++++++. |+.|++||..+++
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~--~-~-~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKV--Q-K-SI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEETTTTEEEEEETTTTEE--E-E-EE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEecCCCEEEEEECCCCcE--E-E-Ee-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 56678999999999875321 1 1 12 24567899999999998888876 4699999999888
Q ss_pred eEEEeeeCCCCCCCeeEEECCCCCEEEEEcC-CCcEEEEECCC
Q 019603 237 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINT 278 (338)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~-Dg~i~vWd~~~ 278 (338)
....+.. ...+..++|+|+|++|++++. |+.|++|+++.
T Consensus 393 ~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 393 VKEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 7766554 245789999999999988764 99999999864
No 125
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=6.3e-26 Score=202.89 Aligned_cols=250 Identities=16% Similarity=0.223 Sum_probs=188.8
Q ss_pred EcCCCeeEeEEeecccCeeeEEEeecC---CeeEEecCccCCCCCceeEEEEccC-CeEE-EeecCCccceEEEEEcCCC
Q 019603 55 DIVSAKLIKTTYHKKHGADCVCFTHHP---SSVICSTKYNLDSTGESLRYLSMYD-NRIL-RYFKGHKERVISLCMSPVN 129 (338)
Q Consensus 55 d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-~~~~~H~~~V~~l~~~~~~ 129 (338)
+....+.+..+..|...+.+++|+++. ..++++ +.++.+++|++.+ +..+ ..+.+|...|++++|+|++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~------~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG------SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEE------ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEE------CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC
Confidence 444555556667778889999998874 444433 2348999999986 5444 7889999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEE--cCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCce
Q 019603 130 DSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAF--DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 206 (338)
Q Consensus 130 ~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 206 (338)
++|++|+.|+.|++||++++++........ ...+.| ++++.++++++.|+.|++||++.... ...+. . ...+
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~--~-~~~~ 173 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--MMVLQ--L-PERC 173 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--SEEEE--C-SSCE
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--EEEEe--c-CCCc
Confidence 999999999999999999888765433222 245777 88999999999999999999886532 22222 2 2345
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE----EEEEcCCCcEEEEECCCC---
Q 019603 207 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY----VVSGSGDGTLHAWNINTR--- 279 (338)
Q Consensus 207 ~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~----l~sgs~Dg~i~vWd~~~~--- 279 (338)
.++.+. ...+++++.++.+.+|+.....................+++.++... +++++.||.|++|++...
T Consensus 174 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 174 YCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred eEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 555555 45788999999999999876654333222233344555666555544 999999999999999987
Q ss_pred CeEeEeeCCCC------------ceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 280 NEVACWNGNIG------------VVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 280 ~~~~~~~~h~~------------~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
+.+..+.+|.. .|++++|+|++++|++++ +.+++|...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 56778888876 799999999999999997 579999765
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-26 Score=207.06 Aligned_cols=214 Identities=10% Similarity=0.081 Sum_probs=164.5
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECC---------Ccceeeeeee-c--CccE
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR---------VNACQGILRL-R--GRPT 162 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~---------~~~~~~~~~~-~--~~~~ 162 (338)
.++++++||+.+++.+..+. ...|.++.++|. ++|||.|++|++|+.. +++....+.. + ....
T Consensus 56 ~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 130 (343)
T 3lrv_A 56 EDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIY 130 (343)
T ss_dssp ETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEE
T ss_pred CCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEE
Confidence 35899999999998887776 577888889887 9999999999999765 3333333332 1 1345
Q ss_pred EEEcC--CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE-E
Q 019603 163 VAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-C 239 (338)
Q Consensus 163 ~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~-~ 239 (338)
+.++| ++.++++++.|+.|++||++.... .......+...+.++.|+|++.++++++.|+.|++||+.+++.. .
T Consensus 131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~ 207 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS 207 (343)
T ss_dssp EECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc
Confidence 78899 999999999999999999886432 12222344557999999999999999999999999999988765 4
Q ss_pred EeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC---CCCceE--EEEEcCCCceEEe--e-cceE
Q 019603 240 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVVA--CLKWAPRRAMFVA--A-SSVL 311 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~---h~~~v~--~l~~~p~~~~l~s--~-s~~~ 311 (338)
.+.. .|...+++++|+|+|.+|++++. +.|++||+++++.+..+.. |...+. +++|+|++++|++ + +..+
T Consensus 208 ~~~~-~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 208 RFPV-DEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp ECCC-CTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEE
T ss_pred EEec-cCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcE
Confidence 3432 27788999999999999999994 5999999998877655543 444444 6999999999999 4 4679
Q ss_pred EEeeeCC
Q 019603 312 SFWIPNP 318 (338)
Q Consensus 312 ~iw~~~~ 318 (338)
++|.+..
T Consensus 286 ~v~~~~~ 292 (343)
T 3lrv_A 286 TIYKFDK 292 (343)
T ss_dssp EEEEECT
T ss_pred EEEEEcc
Confidence 9997753
No 127
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=5.3e-25 Score=215.90 Aligned_cols=279 Identities=10% Similarity=0.047 Sum_probs=211.3
Q ss_pred CcceeEEEeecCCCEEEEeeC-CC-----cEEEEEcCCCeeEeEEeecccC------------------------eeeEE
Q 019603 27 GGKINSLDFHRKDDLLVTASD-DD-----SVRLYDIVSAKLIKTTYHKKHG------------------------ADCVC 76 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~-D~-----~i~iWd~~~~~~~~~~~~~~~~------------------------~~~~~ 76 (338)
.+.|.+++|+|||++|++++. |+ +|++||+.+++.......+... +..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 567999999999999999998 88 8999999998876555443322 56788
Q ss_pred EeecCCeeEEecCccCCCCCceeEEEEccCCe--EEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeee
Q 019603 77 FTHHPSSVICSTKYNLDSTGESLRYLSMYDNR--ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI 154 (338)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~ 154 (338)
|++++..++.... +.+++|++.++. ....+..|...+.+++|+|+|++|++++. +.|++||+.+++....
T Consensus 116 ~SpDg~~l~~~~~-------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ECTTSSEEEEEET-------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred ECCCCCEEEEEeC-------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 8888877766542 789999998873 34557788899999999999999999884 6999999988765443
Q ss_pred eeecC------------------ccEEEEcCCCCEEEEEEcCC---------------------------------eEEE
Q 019603 155 LRLRG------------------RPTVAFDQQGLVFAVAMEAG---------------------------------AIKL 183 (338)
Q Consensus 155 ~~~~~------------------~~~~~~~~~~~~~~~~~~dg---------------------------------~i~i 183 (338)
..... ...+.|+|+|..++.+..|+ .|.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 32222 14589999999888887665 7888
Q ss_pred EeCCC-CCCCCCeeEEec-CCCCceEEEEEcCCCCEEEEEec-----CCcEEEEEccCCeeEEEeeeCCCC--CCCeeEE
Q 019603 184 FDSRS-YDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYGGEKRCGFSLEPSP--NTNTEAT 254 (338)
Q Consensus 184 ~d~~~-~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~i~~~~~-----d~~i~i~~~~~~~~~~~~~~~~~~--~~~~~~~ 254 (338)
||+.. ... ...... .+...+..+.| |||+++++++. +..|++||..+++....+...... ..+..++
T Consensus 268 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 268 ISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp ECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 88765 432 111111 35667889999 99999987765 457999999888766555433211 1345789
Q ss_pred ECCCCCEEEEEcCCCcEEEEECC-CCCeEeEeeCCCCceEEE-EEcCCCceEEee-c--c--eEEEeeeCC
Q 019603 255 FTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACL-KWAPRRAMFVAA-S--S--VLSFWIPNP 318 (338)
Q Consensus 255 fs~~~~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~h~~~v~~l-~~~p~~~~l~s~-s--~--~~~iw~~~~ 318 (338)
|+|||+++++++.||.++||.+. +++ ...+..|...|.++ .|+|+++.++.. + . .++||..+.
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 99999999999999988888876 445 77888888889887 599999876544 3 2 688998764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=7e-25 Score=201.03 Aligned_cols=266 Identities=14% Similarity=0.108 Sum_probs=200.1
Q ss_pred eeeccCCcceeEEEeec--------------CCCEEEEeeCC------CcEEEEEcCCCeeEeEEeecccCeeeEEEeec
Q 019603 21 AIFSDFGGKINSLDFHR--------------KDDLLVTASDD------DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHH 80 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~--------------~~~~l~s~s~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
..|.+|...+..+++++ .+..++.++.+ +.|++||+..+ ..+.+..+...+..++|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCC
Confidence 44778888887777765 15666666654 79999999744 44556666677888999988
Q ss_pred CCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEE-EEECCCe--EEEEECCCcceeeeeee
Q 019603 81 PSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHS--VRIWDLRVNACQGILRL 157 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~-Sgs~D~~--I~iWd~~~~~~~~~~~~ 157 (338)
+..++..+. +.....+++||+.+++.. .+..|...+.+++|+|++++|+ +++.|+. |++||++++++.. +..
T Consensus 190 g~~la~~s~---~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~-l~~ 264 (415)
T 2hqs_A 190 GSKLAYVTF---ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTD 264 (415)
T ss_dssp SSEEEEEEC---TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-CCC
T ss_pred CCEEEEEEe---cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEe-CcC
Confidence 887776543 222358999999988775 4678999999999999999877 7777665 9999998877632 222
Q ss_pred cC--ccEEEEcCCCCEEEEEEc-CC--eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC---CcEEE
Q 019603 158 RG--RPTVAFDQQGLVFAVAME-AG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYV 229 (338)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d---~~i~i 229 (338)
+. ...+.|+|+|..++.++. ++ .|.+||...... ..+..+...+..+.|+|+|+++++++.+ ..|++
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~ 339 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK 339 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEE
Confidence 22 235789999998888776 44 566778765321 1223345678889999999999988875 57999
Q ss_pred EEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC---cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc
Q 019603 230 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
||..+++... +..+. .+..++|+|+|++|++++.|+ .|++||+. ++....+.+|.+.|.+++|+|...
T Consensus 340 ~d~~~~~~~~---l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 340 QDLATGGVQV---LSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EETTTCCEEE---CCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EECCCCCEEE---ecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 9998876532 23332 688999999999999998877 79999997 556778999999999999999754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=2.3e-24 Score=203.93 Aligned_cols=275 Identities=15% Similarity=0.182 Sum_probs=212.4
Q ss_pred EeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc--cCCeEEE
Q 019603 34 DFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM--YDNRILR 111 (338)
Q Consensus 34 ~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 111 (338)
.|+|++.++++++.|++|.+||..+++++.++.... .+..+.+++++..++.++. +++|++||+ .+++.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~-~~~~v~~spdg~~l~v~~~------d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR------DARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST-TEEEEEECTTSCEEEEEET------TSEEEEEETTSSSCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc-ccceEEECCCCCEEEEECC------CCeEEEEECcCCCCcEEE
Confidence 389999999999999999999999999888776332 3677788888877776542 389999999 7888888
Q ss_pred eecCCccceEEEEEcC----CCCEEEEEE-CCCeEEEEECCCcceeeeeeecC-------------ccEEEEcCCCC-EE
Q 019603 112 YFKGHKERVISLCMSP----VNDSFMSGS-LDHSVRIWDLRVNACQGILRLRG-------------RPTVAFDQQGL-VF 172 (338)
Q Consensus 112 ~~~~H~~~V~~l~~~~----~~~~l~Sgs-~D~~I~iWd~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~ 172 (338)
.+.. ...+..++|+| +++++++++ .|++|.+||..+.+++..+...+ ...+.+++++. ++
T Consensus 217 ~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 217 EIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 8874 45679999999 999998888 58999999999998887776422 12467888766 55
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeC--CCCCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLE--PSPNT 249 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~--~~~~~ 249 (338)
++...++.|.+||...... .....+ .+...+..+.|+|+++++++++ .+++|.+||..+++....+... .|+..
T Consensus 296 vs~~~~g~i~vvd~~~~~~--l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDN--LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EEETTTTEEEEEECTTSSS--CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred EEECCCCeEEEEEecCCCc--ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 5667789999999876432 111122 1234466789999999887665 4789999999999877666542 23333
Q ss_pred CeeEEECCC-CCEEEEEc-CCCcEEEEECCC-------CCeEeEeeCCCCceEEEEEcCCCceEEeec---------ceE
Q 019603 250 NTEATFTPD-GQYVVSGS-GDGTLHAWNINT-------RNEVACWNGNIGVVACLKWAPRRAMFVAAS---------SVL 311 (338)
Q Consensus 250 ~~~~~fs~~-~~~l~sgs-~Dg~i~vWd~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---------~~~ 311 (338)
...+ ++|+ +..++|++ .|++|.|||+.+ +++++++++|.+.+..|+|||++++|++++ .+|
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 3332 4677 66777775 689999999998 899999999999999999999999999975 379
Q ss_pred EEeeeCCCC
Q 019603 312 SFWIPNPSS 320 (338)
Q Consensus 312 ~iw~~~~~~ 320 (338)
.+|......
T Consensus 452 ~v~d~~~~~ 460 (543)
T 1nir_A 452 AVFDLKNLD 460 (543)
T ss_dssp EEEETTCTT
T ss_pred EEEECCCCC
Confidence 999776443
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=7.9e-24 Score=200.27 Aligned_cols=290 Identities=10% Similarity=0.018 Sum_probs=209.8
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEc--CCCeeEeEEeecccCeeeEEEee----cCCeeEEecC
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDI--VSAKLIKTTYHKKHGADCVCFTH----HPSSVICSTK 89 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 89 (338)
..+.+.++..+.. +..++|+|+|++|++++.|++|++||+ .+++.+..+.. ......++|++ ++..++.+..
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEc
Confidence 3445556653222 889999999999999999999999999 88888777653 34567788887 7776665432
Q ss_pred ccCCCCCceeEEEEccCCeEEEeecC----------Ccc-ceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceee--ee
Q 019603 90 YNLDSTGESLRYLSMYDNRILRYFKG----------HKE-RVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQG--IL 155 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~~~~----------H~~-~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~--~~ 155 (338)
.++++.+||..++++++.+.. |.. .+.++.++|+++ ++++...+++|.+||+.+.++.. .+
T Consensus 246 -----~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 246 -----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp -----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred -----cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 237899999999999888765 333 799999999766 57788899999999998766543 22
Q ss_pred eec-CccEEEEcCCCCEEEEE-EcCCeEEEEeCCCCCCCCCeeEEec--CCCCceEEEEEcCCCCE-EEEEe-cCCcEEE
Q 019603 156 RLR-GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVG--GDTAEVCDIKFSNDGKS-MLLTT-TNNNIYV 229 (338)
Q Consensus 156 ~~~-~~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~v~~sp~~~~-i~~~~-~d~~i~i 229 (338)
... ....+.|+|+|.+++++ ..+++|.+||.++.+. ...+... .|......+ ++|++.. ++++. .+++|.+
T Consensus 321 ~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 321 GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE--EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence 221 12348899999976655 4689999999876432 1112111 133333333 5777444 44444 4789999
Q ss_pred EEccC-------CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEc-------CCCcEEEEECCCCCeE-eEe--------e
Q 019603 230 LDAYG-------GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-------GDGTLHAWNINTRNEV-ACW--------N 286 (338)
Q Consensus 230 ~~~~~-------~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs-------~Dg~i~vWd~~~~~~~-~~~--------~ 286 (338)
|+..+ .+.+..+.. +...+..++|+|+|++|++++ .+++|.|||+.+++.. ..+ .
T Consensus 398 ~d~~~~~~~~~~~~~v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~ 475 (543)
T 1nir_A 398 IGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG 475 (543)
T ss_dssp EECCTTTCTTTBTSEEEEEEC--SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC
T ss_pred EEeCCCCCchhcCeEEEEEEc--CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccC
Confidence 99887 566555544 334567799999999999987 2789999999998877 444 3
Q ss_pred CCCCceEEEEEcCCCceEEee-------cceEEEeeeC
Q 019603 287 GNIGVVACLKWAPRRAMFVAA-------SSVLSFWIPN 317 (338)
Q Consensus 287 ~h~~~v~~l~~~p~~~~l~s~-------s~~~~iw~~~ 317 (338)
.+...+..++|+|+|+.+..+ ++.|.||...
T Consensus 476 ~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 476 EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp SSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred CCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 567899999999999988854 2568888543
No 131
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=4.1e-26 Score=207.73 Aligned_cols=223 Identities=9% Similarity=0.027 Sum_probs=149.4
Q ss_pred cceeeccCCcceeEEEeec--------CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCc
Q 019603 19 MAAIFSDFGGKINSLDFHR--------KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~--------~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
....+.+|.+.|++|+|+| |+++|+|||.|++|||||+.++.++.....+...+.+++|++.....+...
T Consensus 128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-- 205 (393)
T 4gq1_A 128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG-- 205 (393)
T ss_dssp EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE--
T ss_pred eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec--
Confidence 4456889999999999998 889999999999999999998887777777778888888887654434322
Q ss_pred cCCCCCceeEEEEccCCeEEE-------------------------eecCCccceEEEEEc-CCCCEEEEEECCCeEEEE
Q 019603 91 NLDSTGESLRYLSMYDNRILR-------------------------YFKGHKERVISLCMS-PVNDSFMSGSLDHSVRIW 144 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~-------------------------~~~~H~~~V~~l~~~-~~~~~l~Sgs~D~~I~iW 144 (338)
+.++++++||+.+++... ...+|...|.++.|. |+++.|++++.|+++++|
T Consensus 206 ---~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vw 282 (393)
T 4gq1_A 206 ---ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRW 282 (393)
T ss_dssp ---ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEE
T ss_pred ---CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEE
Confidence 335899999998765322 135788899999986 789999999999999999
Q ss_pred ECCCcceeeeeeecCcc--EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCC-EEEEE
Q 019603 145 DLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLT 221 (338)
Q Consensus 145 d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~i~~~ 221 (338)
|++.++....+..+... .+.+.++ ..........+..+.+.+.+. +++++
T Consensus 283 d~~~~~~~~~l~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 283 NLFANNDYNEISDSTMKLGPKNLLPN---------------------------VQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp EC-------------------CCSCS---------------------------EEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred ECccCCCCceEeeecCccccEEEccc---------------------------cccccccCcceeEEEccCCCCEEEEEE
Confidence 99876654333221111 0111111 011111122222233333444 45566
Q ss_pred ecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 222 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 222 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
+.|+.|++||..+++...... .+...|.+++|+|||++||++++|| +.+|.+
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~--~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPI--QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEE--ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEec--CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 779999999998887654433 4456899999999999999998776 556654
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=4.8e-23 Score=183.60 Aligned_cols=271 Identities=9% Similarity=0.120 Sum_probs=206.2
Q ss_pred cCCcceeEEEeecCCCEEEEeeC-------CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 25 DFGGKINSLDFHRKDDLLVTASD-------DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~-------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.....+..++|+|+|+++++++. ++.|.+||..+++.+..+... .....+.+++++..++.+. ..++
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~-----~~~~ 111 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGN-----TVNS 111 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEE-----TTTT
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEe-----cCCC
Confidence 45677899999999998888774 568999999999887766543 3456677887777665443 2347
Q ss_pred eeEEEEccCCeEEEeecCCccc---------eEEEEEcCCCCEEEEEE--CCCeEEEEECCCcceeeeeeecC--ccEEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKER---------VISLCMSPVNDSFMSGS--LDHSVRIWDLRVNACQGILRLRG--RPTVA 164 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~---------V~~l~~~~~~~~l~Sgs--~D~~I~iWd~~~~~~~~~~~~~~--~~~~~ 164 (338)
.+.+||..+++.+..+..+... +.++.|+|++++++.++ .++.|.+||+++++....+...+ ...+.
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 8999999999988887765432 78899999999776665 58999999999988876666333 34578
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEec--CCCCceEEEEEcCCCCEEEEEecC-CcEEEEEccCCeeEEEe
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG--GDTAEVCDIKFSNDGKSMLLTTTN-NNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~v~~sp~~~~i~~~~~d-~~i~i~~~~~~~~~~~~ 241 (338)
++|+|..++++..++.+.+||..+... ...+... ++...+..+.|+|++++++++..+ +.+.+||..+++....+
T Consensus 192 ~s~dg~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 192 LDSEGKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EETTTTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 999999999999999999999875421 1111111 234457789999999987777654 89999999888876655
Q ss_pred eeCCCCCCCeeEEECCCCCEEEE-EcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 242 SLEPSPNTNTEATFTPDGQYVVS-GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~s-gs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.... ...++|+|+|++++. ...++.|.+||..+++.+..+..+ ..+.+++|+|+++.++.+.
T Consensus 270 ~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 270 AAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSV 332 (353)
T ss_dssp ECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEE
T ss_pred EcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEE
Confidence 5422 256999999996555 457999999999999888888754 4689999999999666554
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.4e-23 Score=184.24 Aligned_cols=275 Identities=9% Similarity=0.089 Sum_probs=195.5
Q ss_pred EEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE-E
Q 019603 33 LDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI-L 110 (338)
Q Consensus 33 l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 110 (338)
..|.++++ .+++++.|+.|++||+.+++.+..+....... .+++++++..++.+.. .++.+.+||+.+++. .
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~-----~~~~i~~~d~~~~~~~~ 76 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD-----FCQTLVQIETQLEPPKV 76 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES-----TTCEEEEEECSSSSCEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC-----CCCeEEEEECCCCceeE
Confidence 34666655 47788899999999999998877666554445 7888877776655432 246899999999887 7
Q ss_pred EeecCCccceEEEEEcCCCCEEEEEECCC---eEEEEECCCcceeeeeeecCc-cEEEEcCCCC-EEEEEEcCCe-EEEE
Q 019603 111 RYFKGHKERVISLCMSPVNDSFMSGSLDH---SVRIWDLRVNACQGILRLRGR-PTVAFDQQGL-VFAVAMEAGA-IKLF 184 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~---~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~dg~-i~i~ 184 (338)
..+..+.....+++|+|++++++++..++ .|++||+.+++....+..... ..+.|+|+|. ++++...++. +.+|
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEE
Confidence 77777777766699999999988555553 999999998887766665443 4588999997 4555566688 9999
Q ss_pred eCCCCCCCC-CeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCee---EEEeeeCCCCCCCeeEEECCCC
Q 019603 185 DSRSYDKGP-FDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDG 259 (338)
Q Consensus 185 d~~~~~~~~-~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~fs~~~ 259 (338)
++....... ...... ........+.|+|+|+++++++ .++.|.+||..+++. ...+.. ...+..++|+|+|
T Consensus 157 ~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg 232 (331)
T 3u4y_A 157 KIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDG 232 (331)
T ss_dssp EECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTS
T ss_pred EECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCC
Confidence 976421100 001111 2334578899999999776665 578999999988876 444432 2456789999999
Q ss_pred CEEEEE-cCCCcEEEEECCCCCe--EeEeeCC----CC---ceEEEEEcCCCceEEeec---ceEEEeeeC
Q 019603 260 QYVVSG-SGDGTLHAWNINTRNE--VACWNGN----IG---VVACLKWAPRRAMFVAAS---SVLSFWIPN 317 (338)
Q Consensus 260 ~~l~sg-s~Dg~i~vWd~~~~~~--~~~~~~h----~~---~v~~l~~~p~~~~l~s~s---~~~~iw~~~ 317 (338)
++|+.+ ..++.|.+||+.+++. +..+..+ .. ...+++|+|++++|+.++ ..+.+|.+.
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 977655 4688999999998876 4444332 22 235699999999876554 478999765
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=2.5e-22 Score=177.97 Aligned_cols=271 Identities=9% Similarity=0.096 Sum_probs=183.0
Q ss_pred EEEEeeCCCcEEEEEcC-CCe--eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc--CCe--EEEee
Q 019603 41 LLVTASDDDSVRLYDIV-SAK--LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY--DNR--ILRYF 113 (338)
Q Consensus 41 ~l~s~s~D~~i~iWd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~--~~~~~ 113 (338)
++++++.|+.|++||+. ++. .+.. ..+...+..++|++++..++.+.. .++.+++|++. +++ .+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVR-----PEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEET-----TTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeec-----CCCeEEEEEecCCCCceeecccc
Confidence 44455789999999995 342 2322 334456778888887776665432 23789999997 444 34455
Q ss_pred cCCccceEEEEEcCCCCEEEEEE-CCCeEEEEECC---CcceeeeeeecC-ccEEEEcCCCCEEEEEE-cCCeEEEEeCC
Q 019603 114 KGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLR---VNACQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLFDSR 187 (338)
Q Consensus 114 ~~H~~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~dg~i~i~d~~ 187 (338)
..+. .+..++|+|++++++.++ .++.|++||+. ..+....+.... ...+.|+|+|..++++. .++.+.+||+.
T Consensus 81 ~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 81 ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 5444 788999999999876665 48999999994 333333333222 34578999999777776 89999999986
Q ss_pred C-CCCCCCee-EEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccC--CeeEE--EeeeCC----CCCCCeeEEEC
Q 019603 188 S-YDKGPFDT-FLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYG--GEKRC--GFSLEP----SPNTNTEATFT 256 (338)
Q Consensus 188 ~-~~~~~~~~-~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~--~~~~~--~~~~~~----~~~~~~~~~fs 256 (338)
. ........ .........+..+.|+|+++++++++ .++.+.+|+... ++... ...... ....+..++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 5 21110000 11112234678899999999877665 688999999843 43221 121111 12345579999
Q ss_pred CCCCEEE-EEcCCCcEEEEECC--C--CCeEeEeeCCCCceEEEEEcCCCceEEeec---ceEEEeeeCCC
Q 019603 257 PDGQYVV-SGSGDGTLHAWNIN--T--RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 319 (338)
Q Consensus 257 ~~~~~l~-sgs~Dg~i~vWd~~--~--~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~iw~~~~~ 319 (338)
|+|++|+ ++..|+.|++|++. + .+.+..+..+.. +.+++|+|+++++++++ ..+.+|..++.
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999877 55689999999998 2 344555655544 88999999999877775 47899977654
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=3.2e-23 Score=179.36 Aligned_cols=253 Identities=12% Similarity=0.107 Sum_probs=185.7
Q ss_pred EeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC-CeEEEeecCC-ccceE
Q 019603 44 TASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD-NRILRYFKGH-KERVI 121 (338)
Q Consensus 44 s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~H-~~~V~ 121 (338)
+++.|++|++||+.+++... +..+...+..++|++++..+++.. ++.+++|++.+ ++....+.+| ...|.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-------EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-------TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-------CCeEEEEeCCCCCCceEecccccccccc
Confidence 46789999999999888664 344566788889988877666542 36899999999 8888777776 47889
Q ss_pred EEEEcCCCCEEEEEE--CCCeEEEEEC--CCcceeeeeeecCccEEEEcCCCCEEE-EEEcCCeEEEEeCCCCCCCCCee
Q 019603 122 SLCMSPVNDSFMSGS--LDHSVRIWDL--RVNACQGILRLRGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDT 196 (338)
Q Consensus 122 ~l~~~~~~~~l~Sgs--~D~~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dg~i~i~d~~~~~~~~~~~ 196 (338)
++.|+|++++|++++ .++..+||.+ ..++............+.|+|++..++ ++..++.+++|++..... . .
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~--~ 165 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-V--E 165 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-C--E
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-c--c
Confidence 999999999999999 4455666654 444322211122234478999999776 778899999998643211 1 2
Q ss_pred EEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEcc-CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC------
Q 019603 197 FLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY-GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD------ 268 (338)
Q Consensus 197 ~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D------ 268 (338)
..+..+...+.++.|+|+++++++++. ++.+.+|+.. .+.... .+..+...+..++|+|+|++|+.++.+
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE--RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE--ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE--EEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 233455677999999999998887774 7888888765 333332 333444567789999999999988776
Q ss_pred -----CcEEEEECCCCCe--EeEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 269 -----GTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 269 -----g~i~vWd~~~~~~--~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
+.|++||+.+++. +..+.+|.+.+.+++|+|+++.|++++.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred cccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 5699999998765 3445588899999999999999988763
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=3.5e-23 Score=202.36 Aligned_cols=285 Identities=10% Similarity=0.002 Sum_probs=199.2
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc---CeeeEEEeecCCeeEEecCccC---CCCCceeEE
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH---GADCVCFTHHPSSVICSTKYNL---DSTGESLRY 101 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ 101 (338)
..+.+++|+|||+++++ +.|++|++||+.+++....+..+.. .+..++|++++..++.+....- .+....+.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 45788999999998876 7899999999999887666555443 3788899998887776543110 112368999
Q ss_pred EEccCCeEEE--eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc-------------------
Q 019603 102 LSMYDNRILR--YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR------------------- 160 (338)
Q Consensus 102 ~~~~~~~~~~--~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~------------------- 160 (338)
|++.+++... ...+|...+..++|+|+|+.|++++. +.|++||+..++..........
T Consensus 96 ~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred EECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9999887622 22356667899999999999999886 7999999988776544332111
Q ss_pred -cEEEEcCCCCEEEEEEcCC----------------------------------eEEEEeCCCCCCCCCeeEEecC----
Q 019603 161 -PTVAFDQQGLVFAVAMEAG----------------------------------AIKLFDSRSYDKGPFDTFLVGG---- 201 (338)
Q Consensus 161 -~~~~~~~~~~~~~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~~---- 201 (338)
..+.|+|+|..++.+..++ .+++||...... . ..+..
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~--~~l~~~~~~ 250 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--D--LEMMPPDDP 250 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--C--EECCCCCCG
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--e--EEeeCCccC
Confidence 3588999999988877543 788898765432 0 11122
Q ss_pred --CCCceEEEEEcCCCCEEEEEecC----CcEEEEEccCCeeEEEeeeCCCCCCC----eeEEECCCCCEEEE--EcCCC
Q 019603 202 --DTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGEKRCGFSLEPSPNTN----TEATFTPDGQYVVS--GSGDG 269 (338)
Q Consensus 202 --~~~~i~~v~~sp~~~~i~~~~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~----~~~~fs~~~~~l~s--gs~Dg 269 (338)
+...+..+.|+|||+++++.... ..+++||..+++....+... +...+ ..++|+|||++|+. +..|+
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 24568889999999988766543 46899999888765544322 11222 37899999997764 45677
Q ss_pred ------cEEEEE-CCCCC--eEeEeeCCCCceEE-EEEcCCCceEEeec-----ceEEEeeeCCC
Q 019603 270 ------TLHAWN-INTRN--EVACWNGNIGVVAC-LKWAPRRAMFVAAS-----SVLSFWIPNPS 319 (338)
Q Consensus 270 ------~i~vWd-~~~~~--~~~~~~~h~~~v~~-l~~~p~~~~l~s~s-----~~~~iw~~~~~ 319 (338)
.|++|| ...++ +...+..+...+.. ++|+|+++.|+..+ ..+.||.++..
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 577777 34443 15556544444544 79999999887553 35889988754
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=4.6e-23 Score=201.15 Aligned_cols=274 Identities=15% Similarity=0.133 Sum_probs=195.0
Q ss_pred eeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeE-eEEeecc-----------------cCeeeEEEeecCCeeEEecCcc
Q 019603 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLI-KTTYHKK-----------------HGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 30 V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
++.+.|. |+.+++++.|+ | +||+.+++.+ ..+..+. ..+..++|+++ ..++.+.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~--- 99 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT--- 99 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE---
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE---
Confidence 5667888 67777788888 8 9999998873 3333322 35777788777 5555432
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC-----cceeeeeeecCc------
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-----NACQGILRLRGR------ 160 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-----~~~~~~~~~~~~------ 160 (338)
++.+++|++.+++... +..|...+.+++|+|++++|+++ .|+.|++||+.+ ++..........
T Consensus 100 ----~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 100 ----QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp ----TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred ----CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 2789999999887654 45577888999999999999984 789999999988 765433322222
Q ss_pred ----------cEEEEcCCCCEEEEEE---------------------------------cCCeEEEEeCCCCCCCCCeeE
Q 019603 161 ----------PTVAFDQQGLVFAVAM---------------------------------EAGAIKLFDSRSYDKGPFDTF 197 (338)
Q Consensus 161 ----------~~~~~~~~~~~~~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~ 197 (338)
..+.|+|+|..++.+. .+..+.+||+........ .
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~--~ 251 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL--Q 251 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC--C
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee--c
Confidence 4588999999998887 446789999865321100 0
Q ss_pred EecCCCCceEEEEEcCCCCEEEEEecCC-----cEEEEEccCC-eeEEEeeeCCCC---CCCeeEEECC--CCCEEEEEc
Q 019603 198 LVGGDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGG-EKRCGFSLEPSP---NTNTEATFTP--DGQYVVSGS 266 (338)
Q Consensus 198 ~~~~~~~~i~~v~~sp~~~~i~~~~~d~-----~i~i~~~~~~-~~~~~~~~~~~~---~~~~~~~fs~--~~~~l~sgs 266 (338)
....+...+..+.|+|||+++++++.++ .+++||..++ ........ ... ..+..++|+| +|++|++++
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~sp~~dg~~l~~~~ 330 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPLTFLPGSNNQFIWQSR 330 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCceeecCCCCEEEEEEc
Confidence 1113456789999999999999988775 8999999888 43333222 122 1246789999 999999999
Q ss_pred CCCcEEEEECC-CCCeEeEeeCCCCceEE-EEEcCCCceEEeec-c----eEEEeeeCCCC
Q 019603 267 GDGTLHAWNIN-TRNEVACWNGNIGVVAC-LKWAPRRAMFVAAS-S----VLSFWIPNPSS 320 (338)
Q Consensus 267 ~Dg~i~vWd~~-~~~~~~~~~~h~~~v~~-l~~~p~~~~l~s~s-~----~~~iw~~~~~~ 320 (338)
.|+.++||.+. +++.+..+..|...+.+ ++|+|+++.++.++ . ...||.++...
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 99999999987 67778888888888877 89999998776554 2 35788776543
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.8e-21 Score=172.42 Aligned_cols=269 Identities=12% Similarity=0.129 Sum_probs=182.1
Q ss_pred ccCCcceeEEEeecCCCEEEEeeCC-CcEEEEEcC--CCee--EeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 24 SDFGGKINSLDFHRKDDLLVTASDD-DSVRLYDIV--SAKL--IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~~l~s~s~D-~~i~iWd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
..|.+.+.+++|+|+|++|++++.+ +.|++|++. +++. +..+... ..+..++|++++..++++. ..++.
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~-----~~~~~ 107 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGS-----YNAGN 107 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEE-----TTTTE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEe-----cCCCe
Confidence 3578889999999999999988886 999999997 5553 2333332 3567778887777665543 22478
Q ss_pred eEEEEcc---CCeEEEeecCCccceEEEEEcCCCCEEEEEE-CCCeEEEEECCC-cceee----eeeec---CccEEEEc
Q 019603 99 LRYLSMY---DNRILRYFKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRV-NACQG----ILRLR---GRPTVAFD 166 (338)
Q Consensus 99 i~~~~~~---~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~-~~~~~----~~~~~---~~~~~~~~ 166 (338)
+.+|++. ..+....+..+ ..+.+++|+|+++++++++ .|+.|++||+.. ++... .+... ....+.|+
T Consensus 108 i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (343)
T 1ri6_A 108 VSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH 186 (343)
T ss_dssp EEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred EEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence 9999994 34455555544 4588999999999887777 899999999987 54432 12221 22347899
Q ss_pred CCCCEEEEE-EcCCeEEEEeCCCCCCCCCee-EEec----C--CCCceEEEEEcCCCCEEEEEe-cCCcEEEEEcc--CC
Q 019603 167 QQGLVFAVA-MEAGAIKLFDSRSYDKGPFDT-FLVG----G--DTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAY--GG 235 (338)
Q Consensus 167 ~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~-~~~~----~--~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~--~~ 235 (338)
|++..++++ ..++.+++||+.... ..+.. .... + ....+..+.|+|++++++++. .++.+.+|+.. ++
T Consensus 187 pdg~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 187 PNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 265 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence 999966555 478999999985321 11111 1111 1 123566899999999887655 68899999987 33
Q ss_pred eeEEEeeeCCCCCCCeeEEECCCCCEEEEEc-CCCcEEEEECC--CCC--eEeEeeCCCCceEEEEEcCCCc
Q 019603 236 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNIN--TRN--EVACWNGNIGVVACLKWAPRRA 302 (338)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~--~~~--~~~~~~~h~~~v~~l~~~p~~~ 302 (338)
..........+. .+..++|+|+|++|++++ .|+.|++|+++ +++ .+..+... ....+++|.|+..
T Consensus 266 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 266 VLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp CEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred ceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence 322222222222 377899999999888887 68999999554 553 34444442 4566788887643
No 139
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=2.6e-22 Score=191.64 Aligned_cols=271 Identities=15% Similarity=0.079 Sum_probs=188.9
Q ss_pred CcceeEEEeecCCCEEEEeeC-CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 27 GGKINSLDFHRKDDLLVTASD-DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
..+|++++|+|||++|++++. |++++||++..++..+...++...+....|+++ .++..+.. .......++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~--~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDV--SKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEEC--STTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEecc--CCCCcceEEEEEe
Confidence 568999999999999999887 999999999776654332222245666666644 54443321 1122444555443
Q ss_pred ---CCeEEEeecCCccceEEEEEcCCCC--EEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcC--
Q 019603 106 ---DNRILRYFKGHKERVISLCMSPVND--SFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA-- 178 (338)
Q Consensus 106 ---~~~~~~~~~~H~~~V~~l~~~~~~~--~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 178 (338)
++.... +..+. .+...+|+|+++ .+++++.|+.+ +||+.++++........ ..+.|+|+|..++.++.+
T Consensus 97 ~~~~g~~~~-l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQR-LEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCEE-CTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCcccc-ccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCC
Confidence 233332 32222 233557777775 45566666554 99998887655444444 678899999999988776
Q ss_pred --CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC--cEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 179 --GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 179 --g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
+.|++||+.+... ..+..+...+..+.|+|||+.++++..++ .|++||..+++.. ....+...+..++
T Consensus 173 ~~~~i~~~d~~~g~~-----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGL-----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYR 244 (582)
T ss_dssp TEEEEEEEETTTCCC-----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHC
T ss_pred CCeEEEEEcCCCCCc-----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhh
Confidence 7899999775432 23346677789999999999999777787 8999999887665 3344444556666
Q ss_pred --------ECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc---eEEEeeeCCC
Q 019603 255 --------FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS---VLSFWIPNPS 319 (338)
Q Consensus 255 --------fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---~~~iw~~~~~ 319 (338)
|+|||.++++++.|+.+++|++ ++... .+.+.|.+++|+ +++++++++. --.+|..+..
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 9999999999999999999999 65544 345789999999 9998888763 2456666644
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=4.6e-22 Score=175.82 Aligned_cols=261 Identities=9% Similarity=0.036 Sum_probs=191.6
Q ss_pred CEEEEeeCCCcEEEEEcCCCeeEeEEeeccc--CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecC-C
Q 019603 40 DLLVTASDDDSVRLYDIVSAKLIKTTYHKKH--GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKG-H 116 (338)
Q Consensus 40 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-H 116 (338)
++|++++.|++|++||+.+++.+..+..... .+..+++++++..++.+. ..++.+.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~-----~~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV-----NKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE-----TTTTEEEEEETTTCCEEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe-----CCCCeEEEEECCCCCeEeeEEcCC
Confidence 4789999999999999999988876654332 366778887776665443 2347899999999888776652 2
Q ss_pred ----ccceEEEEEcCCCCEEEEEE------------CCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEcCC
Q 019603 117 ----KERVISLCMSPVNDSFMSGS------------LDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 117 ----~~~V~~l~~~~~~~~l~Sgs------------~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dg 179 (338)
...+.+++|+|+++++++++ .++.|.+||+.+++....+.... ...+.++|+|..++++ ++
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SS
T ss_pred cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CC
Confidence 33677899999999888876 68999999998887766655432 3457899999977776 68
Q ss_pred eEEEEeCCCCCCCCCeeEEecCC-CCceEEEEEcCCCCEEEEEecCC------------------------cEEEEEccC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTTNN------------------------NIYVLDAYG 234 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~v~~sp~~~~i~~~~~d~------------------------~i~i~~~~~ 234 (338)
.+.+||.+.... ......+. ... +.|+|+++++++.+..+ .+.+||..+
T Consensus 155 ~i~~~d~~~~~~---~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 155 DLHVMDPEAGTL---VEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp SEEEEETTTTEE---EEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred eEEEEECCCCcE---eeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 899999875321 11111111 122 26789988766554332 468999988
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEE
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 312 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~ 312 (338)
++.. ......+...+..++|+|+|++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++ ..+.
T Consensus 229 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 229 GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp CCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEE
T ss_pred CCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEE
Confidence 8765 44444444567789999999999988 799999999998888877654 5678999999999887775 4688
Q ss_pred EeeeC
Q 019603 313 FWIPN 317 (338)
Q Consensus 313 iw~~~ 317 (338)
+|...
T Consensus 305 v~d~~ 309 (337)
T 1pby_B 305 AYDAE 309 (337)
T ss_dssp EEETT
T ss_pred EEECc
Confidence 88654
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1e-20 Score=168.62 Aligned_cols=269 Identities=11% Similarity=0.133 Sum_probs=181.0
Q ss_pred eCCCcEEEEEc--CCCeeEe-EEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe--EEEeecCCccce
Q 019603 46 SDDDSVRLYDI--VSAKLIK-TTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR--ILRYFKGHKERV 120 (338)
Q Consensus 46 s~D~~i~iWd~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~H~~~V 120 (338)
+.++.|.+|++ ++++... ....+......+++++++. ++..+.. ..++.+++|++.+++ .+..+..|...+
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~---~~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE---DDEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE---TTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec---CCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 34677888866 4565433 2233344566788887765 5543321 224789999998776 344556678889
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEECCC-cce--eeeeeecC-----------ccEEEEcCCCCEEEEEEcCCeEEEEe
Q 019603 121 ISLCMSPVNDSFMSGS-LDHSVRIWDLRV-NAC--QGILRLRG-----------RPTVAFDQQGLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 121 ~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~-~~~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~~dg~i~i~d 185 (338)
..++|+|++++|++++ .+++|++||+.. +.. ...+...+ ...++++|+|.++++...++.+++||
T Consensus 89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 9999999999888887 789999999953 322 22222211 12488999999666777789999999
Q ss_pred CCCCCCCCCeeE--EecCCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEccC--CeeEEEeeeCCCC------CCCeeEE
Q 019603 186 SRSYDKGPFDTF--LVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYG--GEKRCGFSLEPSP------NTNTEAT 254 (338)
Q Consensus 186 ~~~~~~~~~~~~--~~~~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~~--~~~~~~~~~~~~~------~~~~~~~ 254 (338)
+... +.+... ...........+.|+|+|++++++ ..++.+.+|+... ++..........+ ..+..++
T Consensus 169 ~~~~--g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 169 VSDA--GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp ECTT--SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred ECCC--CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 8721 111111 111223357789999999977665 4578899998763 5433222222111 3467799
Q ss_pred ECCCCCEE-EEEcCCCcEEEEECCC---CCeEeEeeCCCCceEEEEEcCCCceEEeec---ceEEEeeeCCCC
Q 019603 255 FTPDGQYV-VSGSGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS 320 (338)
Q Consensus 255 fs~~~~~l-~sgs~Dg~i~vWd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~~~~iw~~~~~~ 320 (338)
|+|||++| ++...++.|++|++.. .+.+..+..+...+.+++|+|++++|++++ ..+.+|.+++..
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCC
Confidence 99999987 5566789999999972 345666677777889999999999887774 468999877543
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.7e-21 Score=198.04 Aligned_cols=286 Identities=10% Similarity=0.051 Sum_probs=193.8
Q ss_pred cceeeccCCcceeEEEeecCCCEEEEeeCC------CcEEEEEcCCCeeEeEEeecccCe-------eeEEEeecCCeeE
Q 019603 19 MAAIFSDFGGKINSLDFHRKDDLLVTASDD------DSVRLYDIVSAKLIKTTYHKKHGA-------DCVCFTHHPSSVI 85 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~D------~~i~iWd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 85 (338)
....+.+|.+.|.+++|||||++|++++.+ ..|.+||+.+++. +.+..+...+ ..++|++++. ++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll 121 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-KRITYFSGKSTGRRMFTDVAGFDPDGN-LI 121 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE-EECCCCCEEEETTEECSEEEEECTTCC-EE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe-EEcccCCCcccccccccccccCCCCCE-EE
Confidence 345677899999999999999999988754 3799999988874 4455555455 6788888776 44
Q ss_pred EecCcc-CCCCCceeEEEEccCCeE-------------------------------------------------EEeecC
Q 019603 86 CSTKYN-LDSTGESLRYLSMYDNRI-------------------------------------------------LRYFKG 115 (338)
Q Consensus 86 ~~~~~~-~~~~~~~i~~~~~~~~~~-------------------------------------------------~~~~~~ 115 (338)
..+... -......+..|++.+++. ...+.+
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~ 201 (1045)
T 1k32_A 122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD 201 (1045)
T ss_dssp EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred EEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcC
Confidence 332211 000112355555544332 123356
Q ss_pred CccceEEEEEcCCCCEEEEEECCCeEEEEECCC-cceeeeeee-cC----------------------------------
Q 019603 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGILRL-RG---------------------------------- 159 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-~~~~~~~~~-~~---------------------------------- 159 (338)
|...+.++.|+++ ..+++++.|+++++|.+.. +.....+.. ..
T Consensus 202 ~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l 280 (1045)
T 1k32_A 202 MSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKI 280 (1045)
T ss_dssp CSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEEC
T ss_pred CCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeee
Confidence 7778888888877 6667778888888887542 111111111 11
Q ss_pred -----------------ccEEEEc-CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCC-ceEEEEEcCCCCEEEE
Q 019603 160 -----------------RPTVAFD-QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSNDGKSMLL 220 (338)
Q Consensus 160 -----------------~~~~~~~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~i~~v~~sp~~~~i~~ 220 (338)
...+.|+ |+|..++.+. ++.+.+|+..... ...+..+.. .+..+.|+ +|+.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-----VLKVPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-----EEECSCCSCEEEEEECSS-SEEEEEE
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-----eEEccCCCcceEEeeeEc-CCCeEEE
Confidence 1234455 5555444444 4455555543211 111223444 68889999 9999999
Q ss_pred EecCCcEE-EEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcC
Q 019603 221 TTTNNNIY-VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 299 (338)
Q Consensus 221 ~~~d~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p 299 (338)
++.++.++ +|+..+++... +..+...+..++|+|||++|++++.|+.|++||+.+++....+.+|.+.+.+++|+|
T Consensus 354 ~s~~~~l~~~~d~~~~~~~~---l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 354 GTREGDFLGIYDYRTGKAEK---FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp EETTEEEEEEEETTTCCEEE---CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred EECCCceEEEEECCCCCceE---ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence 88888888 89987765432 225556788999999999999999999999999999988888889999999999999
Q ss_pred CCceEEeecc------------eEEEeeeC
Q 019603 300 RRAMFVAASS------------VLSFWIPN 317 (338)
Q Consensus 300 ~~~~l~s~s~------------~~~iw~~~ 317 (338)
|+++|++++. .+.+|...
T Consensus 431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 431 NSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9999988753 57777544
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=9.3e-22 Score=199.99 Aligned_cols=268 Identities=11% Similarity=0.052 Sum_probs=204.6
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC-CeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS-AKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
..+.+|.+.+.++.|+++ .++++++.|++++||.+.. +...+.+..+. .+...+|++++..++... ++.+
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-------~~~i 267 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-------GGSI 267 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-------TTEE
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-------CCEE
Confidence 445799999999999988 7778888999999998753 33333333332 355668888877666542 3789
Q ss_pred EEEEccCCeEEEeecC-----------CccceEEEEEc-CCCCEEEEEECCCeEEEEECCCcceeeeeeecC---ccEEE
Q 019603 100 RYLSMYDNRILRYFKG-----------HKERVISLCMS-PVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVA 164 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~-----------H~~~V~~l~~~-~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~ 164 (338)
.+|++.... +..+.+ |...+.+++|+ |++++|++++ ++.|.+||+..++... +..+. ...+.
T Consensus 268 ~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 268 YIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRG 344 (1045)
T ss_dssp EEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEEC
T ss_pred EEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeee
Confidence 999984443 335555 45679999999 9999999888 8899999998776432 22222 23467
Q ss_pred EcCCCCEEEEEEcCCeEE-EEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 165 FDQQGLVFAVAMEAGAIK-LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
|+ +|..++.++.++.+. +||..... . ..+.++...+..+.|+|||+++++++.++.+++||+.+++......
T Consensus 345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~---~--~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~- 417 (1045)
T 1k32_A 345 GD-TKVAFIHGTREGDFLGIYDYRTGK---A--EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER- 417 (1045)
T ss_dssp SS-SEEEEEEEETTEEEEEEEETTTCC---E--EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred Ec-CCCeEEEEECCCceEEEEECCCCC---c--eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-
Confidence 88 888888888888888 88876432 1 1222566789999999999999999999999999998887655443
Q ss_pred CCCCCCCeeEEECCCCCEEEEEcCCC----------cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 244 EPSPNTNTEATFTPDGQYVVSGSGDG----------TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~~~l~sgs~Dg----------~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
.+...+..++|||||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|+++.|+.++.
T Consensus 418 -~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 418 -SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp -CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred -CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 4556778899999999999887654 89999999876 6778888889999999999998888763
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=2.9e-22 Score=196.48 Aligned_cols=264 Identities=9% Similarity=0.059 Sum_probs=190.0
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCe--eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAK--LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
.|.+++|+|||++|++++. +.|.+||+.++. ....+..+...+..+.|++++..++.... +.+++|++.+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-------~~i~~~d~~~ 181 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-------RNLWVIDLAS 181 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-------TEEEEEETTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-------CcEEEEecCC
Confidence 4889999999999999986 999999999872 23344455566788889988887765432 5899999999
Q ss_pred CeEEEeecCCccc----------------eEEEEEcCCCCEEEEEECCC-------------------------------
Q 019603 107 NRILRYFKGHKER----------------VISLCMSPVNDSFMSGSLDH------------------------------- 139 (338)
Q Consensus 107 ~~~~~~~~~H~~~----------------V~~l~~~~~~~~l~Sgs~D~------------------------------- 139 (338)
++..+....+... +.++.|+||+++|++++.|+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 8877766655543 47799999999999998876
Q ss_pred --eEEEEECCC-cceeeeeee--cC--ccEEEEcCCCCEEEEEEc-----CCeEEEEeCCCCCCCCCeeEEecCCCC---
Q 019603 140 --SVRIWDLRV-NACQGILRL--RG--RPTVAFDQQGLVFAVAME-----AGAIKLFDSRSYDKGPFDTFLVGGDTA--- 204 (338)
Q Consensus 140 --~I~iWd~~~-~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~--- 204 (338)
.|++||+.+ ++....... +. ...+.| |+|..++.+.. +..|++||..+... ..........
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ---RVLAHETSPTWVP 337 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE---EEEEEEECSSCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce---EEEEEcCCCCcCC
Confidence 899999988 765433221 11 235789 99998887654 56799999876432 1111111111
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEEcc-CCeeEEEeeeCCCCCCCeeE-EECCCCCEEE-EEcCCC--cEEEEECCC-
Q 019603 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNTEA-TFTPDGQYVV-SGSGDG--TLHAWNINT- 278 (338)
Q Consensus 205 ~i~~v~~sp~~~~i~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~-~fs~~~~~l~-sgs~Dg--~i~vWd~~~- 278 (338)
.+..+.|+|||+.+++++.++.+.+|... .+. . ..+..+...+..+ .|+|+|+.|+ +++.|+ .++||++..
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~--~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-A--AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-E--EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-e--eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence 34578899999988888888877777654 233 2 2334444556666 5999999775 555565 899999864
Q ss_pred CCeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 279 RNEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 279 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
++.+..+.. .+.+.+++|+||++.++...
T Consensus 415 g~~~~~l~~-~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 415 GGQPQRLSK-APGMHSASFARNASVYVDSW 443 (741)
T ss_dssp CCCCEECCC-SCSEEEEEECTTSSEEEEEE
T ss_pred CCCeeeccc-CCCceEEEECCCCCEEEEEe
Confidence 555667766 66789999999999888764
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=4e-22 Score=194.85 Aligned_cols=277 Identities=12% Similarity=0.082 Sum_probs=188.9
Q ss_pred ccceeeccCCc---ceeEEEeecCCCEEEEeeCC---------CcEEEEEcCCCeeEeEEee---cccCeeeEEEeecCC
Q 019603 18 AMAAIFSDFGG---KINSLDFHRKDDLLVTASDD---------DSVRLYDIVSAKLIKTTYH---KKHGADCVCFTHHPS 82 (338)
Q Consensus 18 ~~~~~~~~h~~---~V~~l~~s~~~~~l~s~s~D---------~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 82 (338)
+....+.+|.. .|.+++|||||++|++++.| +.+.+||+.+++.. .+.. +...+..++|++++.
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~ 126 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQ 126 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTT
T ss_pred cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCC
Confidence 34456666665 49999999999999999875 67889999988752 2222 122366778888887
Q ss_pred eeEEecCccCCCCCceeEEEEccCCeEEEeecCCccce------------------EEEEEcCCCCEEEEEECCC-----
Q 019603 83 SVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERV------------------ISLCMSPVNDSFMSGSLDH----- 139 (338)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V------------------~~l~~~~~~~~l~Sgs~D~----- 139 (338)
.++..+. +.+++|++.+++..+....+...+ .++.|+|++++|++++.|+
T Consensus 127 ~la~~~~-------~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 199 (723)
T 1xfd_A 127 QLIFIFE-------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPI 199 (723)
T ss_dssp CEEEEET-------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCE
T ss_pred EEEEEEC-------CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccce
Confidence 7775542 689999999888777666655443 7899999999999988664
Q ss_pred -----------------------------eEEEEECCCcceeeeeeec------C--ccEEEEcCCCCEEEEEEcC----
Q 019603 140 -----------------------------SVRIWDLRVNACQGILRLR------G--RPTVAFDQQGLVFAVAMEA---- 178 (338)
Q Consensus 140 -----------------------------~I~iWd~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~d---- 178 (338)
+|++||+.++++...+... . ...+.|+|+|..++....+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 8999999887753334322 1 1347899999988666533
Q ss_pred CeEEEEeCCCCCCCCCeeEEecCCCCce----EEEEEcCCCCEEEEE--ecCC------cEEEEE-ccCCee--EEEeee
Q 019603 179 GAIKLFDSRSYDKGPFDTFLVGGDTAEV----CDIKFSNDGKSMLLT--TTNN------NIYVLD-AYGGEK--RCGFSL 243 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~v~~sp~~~~i~~~--~~d~------~i~i~~-~~~~~~--~~~~~~ 243 (338)
..|++||..+... .......+...+ ..+.|+|||+.+++. ..++ .+++|+ ..++.. .. .+
T Consensus 280 ~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--~l 354 (723)
T 1xfd_A 280 SILTLCDATTGVC---TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ--SI 354 (723)
T ss_dssp EEEEEEETTTCCE---EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC--BS
T ss_pred EEEEEEeCCCCcc---eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee--Ee
Confidence 5789999875432 111111222222 267899999987764 3455 466777 334330 21 22
Q ss_pred CCCCCCCee-EEECCCCCEEEEEcCC---CcEEEEECCCC--CeEeEeeC---CCCceEEEEEcCCCceEEee
Q 019603 244 EPSPNTNTE-ATFTPDGQYVVSGSGD---GTLHAWNINTR--NEVACWNG---NIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 244 ~~~~~~~~~-~~fs~~~~~l~sgs~D---g~i~vWd~~~~--~~~~~~~~---h~~~v~~l~~~p~~~~l~s~ 307 (338)
......+.. ++|+|||++|+..+.+ +.+++|++... .....+.. |.+.+..++|+|+++.++..
T Consensus 355 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 222223333 6899999999765554 78999998643 23444543 67789999999999988775
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=3.1e-21 Score=188.18 Aligned_cols=274 Identities=11% Similarity=0.049 Sum_probs=192.3
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC-
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD- 106 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 106 (338)
..|.+++|+|| +.++.+ .|++|++||+.+++.... ..+...+..++|++++..++... ++.+++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~~-------~~~i~v~~~~~~ 151 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYVR-------NHNLYIARGGKL 151 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEEE-------TTEEEEEECBCT
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEEE-------CCeEEEEecCcc
Confidence 56999999999 655555 359999999998876543 33345577788988887776532 37899999998
Q ss_pred ----CeEEEeecCCccc--------------eEEEEEcCCCCEEEEEE--------------------------------
Q 019603 107 ----NRILRYFKGHKER--------------VISLCMSPVNDSFMSGS-------------------------------- 136 (338)
Q Consensus 107 ----~~~~~~~~~H~~~--------------V~~l~~~~~~~~l~Sgs-------------------------------- 136 (338)
++..+....+... +.++.|+|++++|++++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 8777766555543 47899999999999988
Q ss_pred -CCCeEEEEECCCcceeeeeee--cC--ccEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCCCCCCeeEEecCCCC--
Q 019603 137 -LDHSVRIWDLRVNACQGILRL--RG--RPTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFLVGGDTA-- 204 (338)
Q Consensus 137 -~D~~I~iWd~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~-- 204 (338)
.+..|++||+.+++....... +. ...+.|+|+|..++++..++ .+.+||..+... ........+..
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~--~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF--VRTLFVETDKHYV 309 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE--EEEEEEEECSSCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce--eeEEEEccCCCeE
Confidence 457899999988875433322 11 23588999999888887775 899999876411 11111111221
Q ss_pred -ceEEEEEcC--CCCEEEEEecCCcEEEEEcc-CCeeEEEeeeCCCCCCCee-EEECCCCCEEEEEc-CCC----cEEEE
Q 019603 205 -EVCDIKFSN--DGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNTE-ATFTPDGQYVVSGS-GDG----TLHAW 274 (338)
Q Consensus 205 -~i~~v~~sp--~~~~i~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~-~~fs~~~~~l~sgs-~Dg----~i~vW 274 (338)
.+..+.|+| +|++++++..++.+.+|... .+..... +..+...+.. ++|+|+|+.|+.++ .++ .|+.|
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~--l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ--VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE--CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe--cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 235678999 99988888888888888764 4443332 3334445655 79999999876554 444 67777
Q ss_pred ECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec------ceEEEeeeC
Q 019603 275 NINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS------SVLSFWIPN 317 (338)
Q Consensus 275 d~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s------~~~~iw~~~ 317 (338)
|..+++ ...+. |...+.+++|+|++++++.+. ..+.+|...
T Consensus 388 d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 388 DIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp ETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 877765 34444 667799999999999887763 236777543
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=3.8e-20 Score=163.61 Aligned_cols=274 Identities=11% Similarity=0.121 Sum_probs=179.5
Q ss_pred ccceeeccCCcceeEEEeecCCCEEEEeeC-CCcEEEEEcCCCee-EeEEeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 18 AMAAIFSDFGGKINSLDFHRKDDLLVTASD-DDSVRLYDIVSAKL-IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-D~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
+....+..+...+ .++|+|+|++|+.++. ++.|.+||+.+++. .............+++++++..++... ..
T Consensus 31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~ 104 (331)
T 3u4y_A 31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVT-----GL 104 (331)
T ss_dssp CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECC-----CS
T ss_pred ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEec-----CC
Confidence 3444555556667 9999999997776665 89999999999887 555555544444478888777666321 11
Q ss_pred Cc--eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEE-EEEECCCe-EEEEECCCccee-----eeeee-cCccEEEE
Q 019603 96 GE--SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHS-VRIWDLRVNACQ-----GILRL-RGRPTVAF 165 (338)
Q Consensus 96 ~~--~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~-I~iWd~~~~~~~-----~~~~~-~~~~~~~~ 165 (338)
++ .+++|++.+++.+..+..+ ....+++|+|+++++ +++..++. |.+|++...... ..+.. .....+.|
T Consensus 105 ~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 183 (331)
T 3u4y_A 105 NHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF 183 (331)
T ss_dssp SSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEE
T ss_pred CCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEE
Confidence 23 8999999999988877654 446899999999855 55566688 999998753321 11111 12345889
Q ss_pred cCCCCEEE-EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccCCeeEEEeee
Q 019603 166 DQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 166 ~~~~~~~~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~~~~~~~ 243 (338)
+|+|..++ ++..++.+++||++......... .+. ....+..+.|+|+|++++++.. ++.|.+||..+++.......
T Consensus 184 spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~-~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~ 261 (331)
T 3u4y_A 184 TPDGNFAFVANLIGNSIGILETQNPENITLLN-AVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSF 261 (331)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSSTTSCEEEE-EEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcccceee-ecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccc
Confidence 99998554 45568999999987543200011 111 2345678899999998776654 67899999988876322221
Q ss_pred CCC----CC---CCeeEEECCCCCEEEEE-cCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCC
Q 019603 244 EPS----PN---TNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR 301 (338)
Q Consensus 244 ~~~----~~---~~~~~~fs~~~~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~ 301 (338)
... .. ....++|+|+|++|+.+ ..++.|+|||+.... +..+.+....-....++|+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 262 GHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp ECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred ccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence 111 11 22458999999988655 556799999998643 33333332222224445543
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=5.5e-21 Score=165.25 Aligned_cols=241 Identities=12% Similarity=0.081 Sum_probs=170.4
Q ss_pred ceeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCC-CeeEeEEeec-ccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 20 AAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVS-AKLIKTTYHK-KHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 20 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
...+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...+..++|++++..+++.... .....
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~ 110 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV--EFGKS 110 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT--TTSSC
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC--CCCcc
Confidence 345668999999999999999999987 78999999998 7765443333 2456778888887776655421 01123
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEE-EEECCCeEEEEECC--Ccceeeeeeec--CccEEEEcCCCCEE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR--VNACQGILRLR--GRPTVAFDQQGLVF 172 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~-Sgs~D~~I~iWd~~--~~~~~~~~~~~--~~~~~~~~~~~~~~ 172 (338)
.+..++..+++. ..+..+. .+..+.|+|++++|+ +++.|+.+++|++. .++.. .+..+ ....+.|+|+|..+
T Consensus 111 ~l~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l 187 (297)
T 2ojh_A 111 AIYLLPSTGGTP-RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RLTHGEGRNDGPDYSPDGRWI 187 (297)
T ss_dssp EEEEEETTCCCC-EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCSSSCEEEEEECTTSSEE
T ss_pred eEEEEECCCCce-EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-EcccCCCccccceECCCCCEE
Confidence 444455455543 3344443 488999999999876 88899999999864 33332 22222 23457899999977
Q ss_pred EEEE-cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----------CcEEEEEccCCeeEEE
Q 019603 173 AVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----------NNIYVLDAYGGEKRCG 240 (338)
Q Consensus 173 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----------~~i~i~~~~~~~~~~~ 240 (338)
+.+. .++.+++|++..... . ...+..+...+..+.|+|+++++++++.+ ..+++||+.+++....
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDGS-S--VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EEEECTTSSCEEEEEETTSS-C--EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred EEEecCCCCccEEEECCCCC-C--cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 7665 589999998753211 1 22334456678889999999999888875 4699999988776555
Q ss_pred eeeCCCCCCCeeEEECCCCCEEEEEcCCC
Q 019603 241 FSLEPSPNTNTEATFTPDGQYVVSGSGDG 269 (338)
Q Consensus 241 ~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg 269 (338)
.....+...+..++|+|+|++|++++.|.
T Consensus 265 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 265 FDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eccCCCCcccccceECCCCCEEEEEEecc
Confidence 55545566788899999999999887654
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=1.2e-20 Score=166.77 Aligned_cols=249 Identities=10% Similarity=0.014 Sum_probs=180.9
Q ss_pred ceeEEEeecCCCEE-EEeeCCCcEEEEEcCCCeeEeEEeecc-----cCeeeEEEeecCCeeEEecCcc-C--CC---CC
Q 019603 29 KINSLDFHRKDDLL-VTASDDDSVRLYDIVSAKLIKTTYHKK-----HGADCVCFTHHPSSVICSTKYN-L--DS---TG 96 (338)
Q Consensus 29 ~V~~l~~s~~~~~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~--~~---~~ 96 (338)
.+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+.... ..+..+.+++++..++.+.... . .. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 58899999999865 556678999999999988776554321 1455677877776666542100 0 00 24
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVA 175 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 175 (338)
+.+.+|++.+++.+..+.. ...+.++.|+|++++++.+ ++.|.+||+.+++....+.... .....++|++..++..
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 191 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence 7899999999888777764 4567889999999988877 6899999999888766555433 1223667877654433
Q ss_pred EcC-C-----------------------eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEE
Q 019603 176 MEA-G-----------------------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 231 (338)
Q Consensus 176 ~~d-g-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~ 231 (338)
... + .+.+||.+.... .......+...+..+.|+|++++++++ ++.+++||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD 266 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred ccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence 322 2 467888876432 122223344567889999999998877 68999999
Q ss_pred ccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC
Q 019603 232 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 288 (338)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h 288 (338)
..+++....+... ..+..++|+|+|++|++++.|+.|++||+.+++.+..+..+
T Consensus 267 ~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 267 LEKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TTTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 9888766555432 34678999999999999999999999999999988888654
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=1.9e-19 Score=161.36 Aligned_cols=265 Identities=12% Similarity=0.132 Sum_probs=170.8
Q ss_pred CCcceeEEEeecCCCEEEEeeCC----CcEEEEEcCC--CeeEe--EEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 26 FGGKINSLDFHRKDDLLVTASDD----DSVRLYDIVS--AKLIK--TTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D----~~i~iWd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
|......++|+|+|++|++++.+ +.|.+|++.. ++... ...........+++ ++..++.+. ..++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~-----~~~~ 120 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTAN-----YSGG 120 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEE-----TTTT
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEE-----CCCC
Confidence 67778889999999999999986 7999998865 54322 22212223333444 455454432 2347
Q ss_pred eeEEEEccCCeEEEee------c--------CCccceEEEEEcCCCCEEEEE-ECCCeEEEEECCCcce------e----
Q 019603 98 SLRYLSMYDNRILRYF------K--------GHKERVISLCMSPVNDSFMSG-SLDHSVRIWDLRVNAC------Q---- 152 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~------~--------~H~~~V~~l~~~~~~~~l~Sg-s~D~~I~iWd~~~~~~------~---- 152 (338)
.+.+|++.....+..+ . .+...+.+++|+|++++++.+ ..++.|++|++..... .
T Consensus 121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 8999998643222111 1 123346889999999966544 4589999998864431 1
Q ss_pred --eeeeec---CccEEEEcCCCCEEEEEE-cCCeEEEEeCCCCCCCCCeeEEe-cCCCCceEEEEEcCCCCEEEEEecC-
Q 019603 153 --GILRLR---GRPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTN- 224 (338)
Q Consensus 153 --~~~~~~---~~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~v~~sp~~~~i~~~~~d- 224 (338)
..+... ....++|+|+|..++++. .++.|.+||+............. ..+......+.|+|+|++++++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 111211 223588999999777666 68999999986422111111111 1222346789999999998777765
Q ss_pred -CcEEEEEcc--CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEc-CCCcEEEEECC--CCCeEeEe-eCCCCceEEEEE
Q 019603 225 -NNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNIN--TRNEVACW-NGNIGVVACLKW 297 (338)
Q Consensus 225 -~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~--~~~~~~~~-~~h~~~v~~l~~ 297 (338)
+.+.+|++. +++......... ...+..++|+|+|++|++++ .++.|.+|+++ +++..... ..+...+.||.|
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 789999985 454332222222 34567899999999988877 67899997554 66654433 235577899998
Q ss_pred c
Q 019603 298 A 298 (338)
Q Consensus 298 ~ 298 (338)
.
T Consensus 360 ~ 360 (361)
T 3scy_A 360 V 360 (361)
T ss_dssp E
T ss_pred c
Confidence 6
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.5e-19 Score=161.14 Aligned_cols=252 Identities=12% Similarity=0.137 Sum_probs=166.9
Q ss_pred ccCCcceeEEEeecCCCEEEEeeC---CCcEEEEEcCCCee--EeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 24 SDFGGKINSLDFHRKDDLLVTASD---DDSVRLYDIVSAKL--IKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~~l~s~s~---D~~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
..+......++|+|+|+ |++++. |+.|.+||+.+++. +.....+...+..+++++++..++++.. .++.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~-----~~~~ 109 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY-----HKGT 109 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET-----TTTE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC-----CCCE
Confidence 35567788899999999 555554 68999999987763 3333334556677888888776665432 3478
Q ss_pred eEEEEcc-CCe--EEEeecC---------CccceEEEEEcCCCCEEEEEECCCeEEEEECC-Ccceeee--eeec---Cc
Q 019603 99 LRYLSMY-DNR--ILRYFKG---------HKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQGI--LRLR---GR 160 (338)
Q Consensus 99 i~~~~~~-~~~--~~~~~~~---------H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~-~~~~~~~--~~~~---~~ 160 (338)
+++|++. ++. .+..+.. +...+.+++|+|+++.+++...++.|++||+. .++.... +... ..
T Consensus 110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 9999995 332 2333321 22358899999999977777789999999998 4543221 1221 22
Q ss_pred cEEEEcCCCCEEEE-EEcCCeEEEEeCCCCCCCCCee-EEecCCC------CceEEEEEcCCCCEEEEE-ecCCcEEEEE
Q 019603 161 PTVAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDT-FLVGGDT------AEVCDIKFSNDGKSMLLT-TTNNNIYVLD 231 (338)
Q Consensus 161 ~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~------~~i~~v~~sp~~~~i~~~-~~d~~i~i~~ 231 (338)
..++|+|+|..+++ ...++.+.+|++.... ..+.. ....... ..+..+.|+|+|++++++ ..++.|.+|+
T Consensus 190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34899999995554 5678899999876311 11111 1111111 347889999999987554 4588999999
Q ss_pred cc-CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC-CCcEEEEEC--CCCCeE
Q 019603 232 AY-GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNI--NTRNEV 282 (338)
Q Consensus 232 ~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~-Dg~i~vWd~--~~~~~~ 282 (338)
+. .+..........+...+..++|+|+|++|++++. ++.|.+|++ .+++..
T Consensus 269 ~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 85 2222222223333345778999999999888765 489999955 556554
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=6e-20 Score=165.96 Aligned_cols=290 Identities=12% Similarity=0.066 Sum_probs=196.7
Q ss_pred ccceeeccCCcceeE-----EEeecCCCEEEEeeC-CCc--EEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecC
Q 019603 18 AMAAIFSDFGGKINS-----LDFHRKDDLLVTASD-DDS--VRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 18 ~~~~~~~~h~~~V~~-----l~~s~~~~~l~s~s~-D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
.++..+..|.+.+.. .+|+|||++|+.++. |+. |.+||+.+++.......+...+....|++++..++....
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 355667777776666 889999999999887 664 888899888766544443333335678888877765432
Q ss_pred ccCCCCCceeEEEEccCCeEEEeecCCccceEEEE--EcCCCCEEEE----------------------EECCCeEEEEE
Q 019603 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLC--MSPVNDSFMS----------------------GSLDHSVRIWD 145 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~--~~~~~~~l~S----------------------gs~D~~I~iWd 145 (338)
+..+++|++.+++....+..+...+.... ++|+++.++. .+.+..|.+||
T Consensus 101 ------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 101 ------GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp ------TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred ------CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 36899999999988777777777665544 4899988874 23557899999
Q ss_pred CCCcceeeeeeecC-ccEEEEcC-CCCEEEEEEcC------CeEEEEeCCCCCCCCCeeEEecCCC--CceEEEEEcCCC
Q 019603 146 LRVNACQGILRLRG-RPTVAFDQ-QGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLVGGDT--AEVCDIKFSNDG 215 (338)
Q Consensus 146 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~v~~sp~~ 215 (338)
+.+++......... ...+.|+| +|..++....+ ..+.++|...... ..+..+. ..+..+.|+|||
T Consensus 175 ~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 175 LKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp TTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCCTTEEEEEEEECTTS
T ss_pred CCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCCCCcccccceECCCC
Confidence 99887544433322 24578999 99888776653 3677777543221 1111222 347788999999
Q ss_pred CEEEEEecC-C----cEEEEEccCCeeEEEeeeCCCC---CCCeeEEECCCCCEEEEE---------cCCCcEEEEECCC
Q 019603 216 KSMLLTTTN-N----NIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYVVSG---------SGDGTLHAWNINT 278 (338)
Q Consensus 216 ~~i~~~~~d-~----~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~fs~~~~~l~sg---------s~Dg~i~vWd~~~ 278 (338)
+.++..+.. + .+++||+.+++........... .......|+|||++|+.. ..+..|++||+.+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 988765542 2 3999999888754433333210 012234799999988753 5567899999988
Q ss_pred CCeEeEeeCCCC-----------ceEEEEEcCCCceEEeec---ceEEEeeeCCC
Q 019603 279 RNEVACWNGNIG-----------VVACLKWAPRRAMFVAAS---SVLSFWIPNPS 319 (338)
Q Consensus 279 ~~~~~~~~~h~~-----------~v~~l~~~p~~~~l~s~s---~~~~iw~~~~~ 319 (338)
++. ..+..|.+ .+.+++|+||++.|+.++ +...||.++..
T Consensus 330 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 330 GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 654 45666655 578899999999888765 35678876643
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=2.2e-19 Score=159.40 Aligned_cols=242 Identities=11% Similarity=0.039 Sum_probs=175.8
Q ss_pred EEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecc-cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEE
Q 019603 32 SLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKK-HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110 (338)
Q Consensus 32 ~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (338)
++++++++.++++++.|++|++||+.+++.+..+.... .....+++++++..++.+. ..++.+.+|++.+++.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-----~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN-----NHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE-----TTTTEEEEEETTTTEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe-----CCCCcEEEEeCCCCcEE
Confidence 45788889999999999999999999998877665433 1456677777766555443 23478999999999887
Q ss_pred EeecC-C-----ccceEEEEEcCCCCEEEEEECC------------CeEEEEECCCccee---eeeeec-CccEEEEcCC
Q 019603 111 RYFKG-H-----KERVISLCMSPVNDSFMSGSLD------------HSVRIWDLRVNACQ---GILRLR-GRPTVAFDQQ 168 (338)
Q Consensus 111 ~~~~~-H-----~~~V~~l~~~~~~~~l~Sgs~D------------~~I~iWd~~~~~~~---~~~~~~-~~~~~~~~~~ 168 (338)
..+.. + ...+.+++|+|+++++++++.+ +.|.+||+.+++.. ..+... ....+.++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d 158 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 158 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence 77653 3 2347889999999999988866 99999999875432 222222 2334779999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEec------------------------------------------------
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG------------------------------------------------ 200 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------------------ 200 (338)
|. ++++. +.+.+||.++.... ..+...
T Consensus 159 g~-l~~~~--~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 159 GS-LYVAG--PDIYKMDVKTGKYT--VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp SC-EEEES--SSEEEECTTTCCEE--EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred Cc-EEEcc--CcEEEEeCCCCcee--ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 99 44443 44999997653210 000000
Q ss_pred ------------------CCCCceEEEEEcC-CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 201 ------------------GDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 201 ------------------~~~~~i~~v~~sp-~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
.....+..+.|+| ++++++++ ++.|.+||+.+++....+... ..+..++|+|+|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGDK 308 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCEEEECSSSSC
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC---CCccceEECCCCCE
Confidence 0011345678889 99988877 889999999988776555432 24678999999999
Q ss_pred EEEEcCCCcEEEEECCCCCeEeEeeCC
Q 019603 262 VVSGSGDGTLHAWNINTRNEVACWNGN 288 (338)
Q Consensus 262 l~sgs~Dg~i~vWd~~~~~~~~~~~~h 288 (338)
|++++.++.|++||+.+++.+..++..
T Consensus 309 l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEecCCCeEEEEeccccceeeeeecC
Confidence 999999999999999999888887654
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.6e-18 Score=153.94 Aligned_cols=278 Identities=9% Similarity=0.143 Sum_probs=181.3
Q ss_pred CCEEEEe----eCCCcEEEEEc--CCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC--CeE-
Q 019603 39 DDLLVTA----SDDDSVRLYDI--VSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD--NRI- 109 (338)
Q Consensus 39 ~~~l~s~----s~D~~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~- 109 (338)
..+++.| +.++.|.+|++ .+++.......+......+++++++..++.++.. ....+.+.+|++.. ++.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~--~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEF--SKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECC--SSTTCEEEEEEEETTTTEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEcc--CCCCCcEEEEEEeCCCCcEE
Confidence 3455555 35678999976 4565433222244556678888887766655431 01236899998865 443
Q ss_pred -EEeecCCccceEEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeee----eeecC------------ccEEEEcCCCCE
Q 019603 110 -LRYFKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGI----LRLRG------------RPTVAFDQQGLV 171 (338)
Q Consensus 110 -~~~~~~H~~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~~~~~~~----~~~~~------------~~~~~~~~~~~~ 171 (338)
+.....+......+++ +++++++++ .+++|.+|++........ +...+ ...+.|+|+|..
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3344456667778888 777776665 689999999975432211 11111 124889999986
Q ss_pred EEEE-EcCCeEEEEeCCCCCCC---C-Ce-----eEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEE
Q 019603 172 FAVA-MEAGAIKLFDSRSYDKG---P-FD-----TFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCG 240 (338)
Q Consensus 172 ~~~~-~~dg~i~i~d~~~~~~~---~-~~-----~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~ 240 (338)
++++ ..++.+++|++...... . +. .............+.|+|+|+++++++ .++.|.+|+..++.....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 5544 45899999987643210 1 11 111223345578899999999888777 588999999887754332
Q ss_pred eeeC---CCCCCCeeEEECCCCCEEEEEcC--CCcEEEEECC--CCC--eEeEeeCCCCceEEEEEcCCCceEEeec---
Q 019603 241 FSLE---PSPNTNTEATFTPDGQYVVSGSG--DGTLHAWNIN--TRN--EVACWNGNIGVVACLKWAPRRAMFVAAS--- 308 (338)
Q Consensus 241 ~~~~---~~~~~~~~~~fs~~~~~l~sgs~--Dg~i~vWd~~--~~~--~~~~~~~h~~~v~~l~~~p~~~~l~s~s--- 308 (338)
.... .+......++|+|||++|+.+.. ++.|++|++. +++ .+..+.. ...+.+++|+|++++|++++
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 2221 22234568999999999876655 5899999996 444 4444544 56788999999999888775
Q ss_pred ceEEEeeeCCCCC
Q 019603 309 SVLSFWIPNPSSN 321 (338)
Q Consensus 309 ~~~~iw~~~~~~~ 321 (338)
..+.+|.+++...
T Consensus 328 ~~v~v~~~d~~~g 340 (361)
T 3scy_A 328 NVIQIFERDQATG 340 (361)
T ss_dssp TEEEEEEECTTTC
T ss_pred CCEEEEEEECCCC
Confidence 4689998876543
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=7.2e-21 Score=175.25 Aligned_cols=222 Identities=15% Similarity=0.169 Sum_probs=153.8
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
...++.+++++++.++++++.|+ +++|+....... ... .. ....+.....
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~-----------~~---------------~~~~~~~~~~ 85 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKP-----------GD---------------DPNKIVDKVQ 85 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCT-----------TC---------------CTTCEEECCC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---ccc-----------cc---------------CcccccccCc
Confidence 44689999999999999999888 999876321100 000 00 0000000000
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEE----EEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEE
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFM----SGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~----Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 182 (338)
.. ...|...|++++|+|++++|+ +|+.|++|++||++++..... . .
T Consensus 86 ---~~-~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~-~--~----------------------- 135 (434)
T 2oit_A 86 ---GL-LVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK-Q--Q----------------------- 135 (434)
T ss_dssp ---CE-EECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC-S--S-----------------------
T ss_pred ---cc-cccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc-C--C-----------------------
Confidence 01 123678899999999999999 899999999999865411000 0 0
Q ss_pred EEeCCCCCCCCCe-eEEecCCCCceEEEEEcCC-CCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC
Q 019603 183 LFDSRSYDKGPFD-TFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 260 (338)
Q Consensus 183 i~d~~~~~~~~~~-~~~~~~~~~~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 260 (338)
..++. .....+|...|.+++|+|+ +.++++++.|+.|++||+.++.... ....|...+.+++|+|+|+
T Consensus 136 --------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~--~~~~~~~~v~~v~wspdg~ 205 (434)
T 2oit_A 136 --------KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC--ATLPSTVAVTSVCWSPKGK 205 (434)
T ss_dssp --------CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE--EEECGGGCEEEEEECTTSS
T ss_pred --------cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee--eccCCCCceeEEEEcCCCC
Confidence 00000 0112356778999999998 7889999999999999998875432 3334566899999999999
Q ss_pred EEEEEcCCCcEEEEECCCCCeEeEeeCCC-------CceEEEEEcCCCceEEeec-c--------eEEEeeeCCC
Q 019603 261 YVVSGSGDGTLHAWNINTRNEVACWNGNI-------GVVACLKWAPRRAMFVAAS-S--------VLSFWIPNPS 319 (338)
Q Consensus 261 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~-------~~v~~l~~~p~~~~l~s~s-~--------~~~iw~~~~~ 319 (338)
+|++|+.||.|++||.+ ++....+..|. ..|.+++|++++.++++.+ . .+.+|.....
T Consensus 206 ~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 206 QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99999999999999998 56666665442 3899999999998886643 1 2788876543
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=6e-20 Score=179.51 Aligned_cols=283 Identities=11% Similarity=0.045 Sum_probs=187.5
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc---CeeeEEEeecCCeeEEecCccC---CCCCceeEEEEc
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH---GADCVCFTHHPSSVICSTKYNL---DSTGESLRYLSM 104 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~ 104 (338)
.+++|+|+|++++++ .|++|++||+.+++......++.. .+..++|++++..++.++...- -+.++.+++|++
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 378999999766554 699999999999987665554433 3778889988887775542100 012368999999
Q ss_pred cCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec-C-------------------ccEEE
Q 019603 105 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-G-------------------RPTVA 164 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~-------------------~~~~~ 164 (338)
.+++.+.. ......+..++|+|+|+.|++++ |+.|++||+.++++....... . ...+.
T Consensus 98 ~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 98876211 11235688899999999999886 789999999877654322111 0 13589
Q ss_pred EcCCCCEEEEEEcCC----------------------------------eEEEEeCCCCCCC---CCee-EEecCCCCce
Q 019603 165 FDQQGLVFAVAMEAG----------------------------------AIKLFDSRSYDKG---PFDT-FLVGGDTAEV 206 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg----------------------------------~i~i~d~~~~~~~---~~~~-~~~~~~~~~i 206 (338)
|+|||..++.++.|. .+++||+...... .+.. ..+.++...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 999999999887552 6778887653210 0000 0012456678
Q ss_pred EEEEEcCCCCEEEEEecCC----cEEEEE----ccCCeeEEEee--eCCCCCCCe-----eEEECCCCCEEE--EEcCCC
Q 019603 207 CDIKFSNDGKSMLLTTTNN----NIYVLD----AYGGEKRCGFS--LEPSPNTNT-----EATFTPDGQYVV--SGSGDG 269 (338)
Q Consensus 207 ~~v~~sp~~~~i~~~~~d~----~i~i~~----~~~~~~~~~~~--~~~~~~~~~-----~~~fs~~~~~l~--sgs~Dg 269 (338)
..+.|+||++.+++....+ .|++|| ..+++...... ...+...+. .+.|+|||+.|+ +...+|
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 9999999977655543322 488889 76665443221 023444555 789999999554 354555
Q ss_pred --cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-------ceEEEeeeCC
Q 019603 270 --TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNP 318 (338)
Q Consensus 270 --~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-------~~~~iw~~~~ 318 (338)
.|++|++.+++ ...+..+...+..+.++ ++..++..+ ....+|..+.
T Consensus 336 ~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 336 YKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 57777877665 45676676778888777 766555543 3478998765
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=1.3e-17 Score=148.39 Aligned_cols=241 Identities=10% Similarity=0.114 Sum_probs=174.6
Q ss_pred cCeeeEEEeecCCeeEEecCccCC-CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCE-EEEEECCCeEEEEECC
Q 019603 70 HGADCVCFTHHPSSVICSTKYNLD-STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLR 147 (338)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~-l~Sgs~D~~I~iWd~~ 147 (338)
.....+++++++..++.+...... ..++.+.+||..+++.+..+.. ...+.+++|+|++++ ++++..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 345567777777666655421100 0146899999999988877764 345778999999985 4566678999999999
Q ss_pred CcceeeeeeecC-----------ccEEEEcCCCCEEEEEE--cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCC
Q 019603 148 VNACQGILRLRG-----------RPTVAFDQQGLVFAVAM--EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 214 (338)
Q Consensus 148 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~ 214 (338)
+++....+.... ...+.++|+|..++++. .++.|.+||.++... ...+..+...+..+.|+|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL----KTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE----EEEECCCCTTCCCCEEETT
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce----EEEecCCCCccceEEECCC
Confidence 988776666533 23478999998776665 478899999875321 1122223344677899999
Q ss_pred CCEEEEEecCCcEEEEEccCCeeEEEeeeCC--CCCCCeeEEECCCCCEEEEEc-CCCcEEEEECCCCCeEeEeeCCCCc
Q 019603 215 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGV 291 (338)
Q Consensus 215 ~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~h~~~ 291 (338)
+++++++..++.+.+||..+++....+.... +...+..++|+|+|++|+.++ .++.|++||..+++.+..+.....
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 274 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES- 274 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-
Confidence 9999999999999999999888776555422 234567799999999877665 459999999999998888875443
Q ss_pred eEEEEEcCCCceEEeec---ceEEEeeeC
Q 019603 292 VACLKWAPRRAMFVAAS---SVLSFWIPN 317 (338)
Q Consensus 292 v~~l~~~p~~~~l~s~s---~~~~iw~~~ 317 (338)
.+++|+|+++.++.++ ..+.+|...
T Consensus 275 -~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 275 -LAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp -CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 5799999998555443 467777543
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.3e-18 Score=170.81 Aligned_cols=285 Identities=10% Similarity=0.079 Sum_probs=184.7
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccC---eee--EEEeecCCeeEEecCccC---CCCCc
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG---ADC--VCFTHHPSSVICSTKYNL---DSTGE 97 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~---~~~~~ 97 (338)
+.....++.|+|||++++++ |++|++||+.++++...+..+... +.. ..+++++..++......- -+..+
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 34557789999999999986 999999999999876655554322 223 677888777765542100 01124
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC------------------
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG------------------ 159 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~------------------ 159 (338)
.+.+||+.+++.. .+..|...+...+|+|||+.||.++ |+.|++||+..++.... ...+
T Consensus 93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~l-t~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI-TWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC-CSCCBTTTEEESBCCHHHHHHT
T ss_pred EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEE-cCCCCccceecCcccccccchh
Confidence 5789999998754 4677889999999999999999884 78999999987764321 1111
Q ss_pred ---ccEEEEcCCCCEEEEEEcCC------------------------------------eEEEEeCCC---CCCCCCeeE
Q 019603 160 ---RPTVAFDQQGLVFAVAMEAG------------------------------------AIKLFDSRS---YDKGPFDTF 197 (338)
Q Consensus 160 ---~~~~~~~~~~~~~~~~~~dg------------------------------------~i~i~d~~~---~~~~~~~~~ 197 (338)
...+.|+|||..++.+..|. .+++||+.. ..... ..
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~--~~ 247 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT--SI 247 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC--EE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce--EE
Confidence 12378999999888765322 356667654 31101 11
Q ss_pred Eec------CCCCceEEEEEcCCCCEEEEEecC----CcEEEEEccCCe----eEEEeee--CCCCCCCe-----eEEEC
Q 019603 198 LVG------GDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGE----KRCGFSL--EPSPNTNT-----EATFT 256 (338)
Q Consensus 198 ~~~------~~~~~i~~v~~sp~~~~i~~~~~d----~~i~i~~~~~~~----~~~~~~~--~~~~~~~~-----~~~fs 256 (338)
.+. ++...+..+.|+|||+.++..... ..|++||..+++ +....++ ..+...+. ..+|+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 121 255668899999999976655432 268999988876 2211111 23444443 68899
Q ss_pred CCCCEEE-EEcC-C--CcEEEEECCCCCeEeEeeCCCCceEEEE-EcCCCceEEeecc------eEEEeeeCCC
Q 019603 257 PDGQYVV-SGSG-D--GTLHAWNINTRNEVACWNGNIGVVACLK-WAPRRAMFVAASS------VLSFWIPNPS 319 (338)
Q Consensus 257 ~~~~~l~-sgs~-D--g~i~vWd~~~~~~~~~~~~h~~~v~~l~-~~p~~~~l~s~s~------~~~iw~~~~~ 319 (338)
|||+.|+ ..++ + ..|++||...++.. .+......|..+. |+ ++.++++++. ...||.++..
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~ 399 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLI 399 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECC
Confidence 9999877 6553 3 46888998876554 4444445555544 43 3334444433 2567766543
No 159
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=4.9e-18 Score=164.39 Aligned_cols=290 Identities=12% Similarity=0.016 Sum_probs=190.9
Q ss_pred eeeccCCcceeEEEeecCCCEEEEe--eCCCcEEEEEcCCCeeEeEEeecccCee---------eEEEe--ecCCe-eEE
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTA--SDDDSVRLYDIVSAKLIKTTYHKKHGAD---------CVCFT--HHPSS-VIC 86 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~--s~D~~i~iWd~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~-~~~ 86 (338)
..+.+|...|..++|++++-++++. +.|+..+||....+...+.+..+...+. ...++ +++.. ++.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467899999999999887777777 6689999999654444444444443333 44454 56666 554
Q ss_pred ecCccCCCCCceeEEEEcc--C-CeEEEeecC-----CccceEEEEEcCCCCEEEEEECC----------CeEEEEECCC
Q 019603 87 STKYNLDSTGESLRYLSMY--D-NRILRYFKG-----HKERVISLCMSPVNDSFMSGSLD----------HSVRIWDLRV 148 (338)
Q Consensus 87 ~~~~~~~~~~~~i~~~~~~--~-~~~~~~~~~-----H~~~V~~l~~~~~~~~l~Sgs~D----------~~I~iWd~~~ 148 (338)
+... ...|.++++. + ++ ...+.. |...+.+++|+|+++.|++++.| .+|++||+..
T Consensus 97 ~~~~-----~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 97 THFG-----DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EBTT-----TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EECC-----CCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 4321 2456666655 2 43 344555 77889999999999999999887 6899999987
Q ss_pred ------cceeeee-eecC-ccEEEEcCCCCEEEEEEcC--------CeEEEEeCC-CCCCCCCeeEEecCCCCceEEEEE
Q 019603 149 ------NACQGIL-RLRG-RPTVAFDQQGLVFAVAMEA--------GAIKLFDSR-SYDKGPFDTFLVGGDTAEVCDIKF 211 (338)
Q Consensus 149 ------~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~-~~~~~~~~~~~~~~~~~~i~~v~~ 211 (338)
++..... .... ...+.|+|||..++.++.+ ..|.+||+. ....... ..+..++...+..+.|
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~-~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT-RTLLGGPEEAIAQAEW 249 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE-EEEEEETTBCEEEEEE
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc-EEeCCCCCceEcceEE
Confidence 5543222 1111 2236899999998877755 379999986 3210011 2223344567889999
Q ss_pred cCCCCEEEEEecCC--cEEEEEccCCeeEEEeeeCCC---CC---CCeeEEECCCCCEEEEEcCCCcEEEE--ECCCCCe
Q 019603 212 SNDGKSMLLTTTNN--NIYVLDAYGGEKRCGFSLEPS---PN---TNTEATFTPDGQYVVSGSGDGTLHAW--NINTRNE 281 (338)
Q Consensus 212 sp~~~~i~~~~~d~--~i~i~~~~~~~~~~~~~~~~~---~~---~~~~~~fs~~~~~l~sgs~Dg~i~vW--d~~~~~~ 281 (338)
+|||+.++++..++ .+++|+..+++.......... +. .+..++|+|+++++++++. +.++|| |..++ .
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-~ 327 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-E 327 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-E
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-c
Confidence 99999666666667 677777656654432221111 01 1457899999999999999 999999 44444 4
Q ss_pred EeEeeCCCCceEEE-EEcCCCceEEeec--ceEEEeeeCCC
Q 019603 282 VACWNGNIGVVACL-KWAPRRAMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 282 ~~~~~~h~~~v~~l-~~~p~~~~l~s~s--~~~~iw~~~~~ 319 (338)
+..+..|.+.+..+ +++++.-.+++++ ....||.++..
T Consensus 328 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 328 LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 67888888888877 5555444444444 23577776643
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=1.9e-17 Score=148.80 Aligned_cols=273 Identities=11% Similarity=0.079 Sum_probs=188.4
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEee----------CCCcEEEEEcCCCeeEeEEeec------ccCeeeEEEeec
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTAS----------DDDSVRLYDIVSAKLIKTTYHK------KHGADCVCFTHH 80 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s----------~D~~i~iWd~~~~~~~~~~~~~------~~~~~~~~~~~~ 80 (338)
.+.+..+..+.++ .++|+|||++|+++. .|++|.+||..+++.+..+... ......+.++++
T Consensus 41 ~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd 118 (361)
T 2oiz_A 41 GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD 118 (361)
T ss_dssp CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT
T ss_pred CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC
Confidence 3444556666665 899999999999886 3778999999988887766432 123456788888
Q ss_pred CCeeEEecCccCCCCCceeEEEEccCCeEEEe-ecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCC-cceeee---
Q 019603 81 PSSVICSTKYNLDSTGESLRYLSMYDNRILRY-FKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRV-NACQGI--- 154 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~-~~~~~~--- 154 (338)
+..++.+.. ..++++.+||+.+++.+.. +.. .. ...+.+.|++ ..+++.+.||++.+|++.. ++....
T Consensus 119 g~~l~v~n~----~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~ 192 (361)
T 2oiz_A 119 GKFIVLQNA----SPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS 192 (361)
T ss_dssp SSEEEEEEE----SSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC
T ss_pred CCEEEEECC----CCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc
Confidence 777766532 1137899999999988877 542 22 2335567765 6788999999999999864 443311
Q ss_pred ---eeecCccE-EEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC----C----CCceEEEEEcCCCCEEEEEe
Q 019603 155 ---LRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG----D----TAEVCDIKFSNDGKSMLLTT 222 (338)
Q Consensus 155 ---~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~----~~~i~~v~~sp~~~~i~~~~ 222 (338)
+.....+. +.+.+++..++....++.+.++|+..........+.... . ......+.|+|+++.++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 193 KQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp CCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred cceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 11111111 223456666666778889999997542211111111000 0 01111267999988777664
Q ss_pred c-----------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC--CeEeEeeCCC
Q 019603 223 T-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--NEVACWNGNI 289 (338)
Q Consensus 223 ~-----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~--~~~~~~~~h~ 289 (338)
. .+.|.+||..+++.+..+.... ...++|+|+|++|++++. +.|.|||..++ +.+..+..+.
T Consensus 273 ~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G 347 (361)
T 2oiz_A 273 HPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAA 347 (361)
T ss_dssp ESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSC
T ss_pred ccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCC
Confidence 3 3479999999998777665443 788999999999999887 99999999999 8998887777
Q ss_pred CceEEEEEcCCCc
Q 019603 290 GVVACLKWAPRRA 302 (338)
Q Consensus 290 ~~v~~l~~~p~~~ 302 (338)
..-+.++++|+|.
T Consensus 348 ~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 348 EASLQVQFHPVGG 360 (361)
T ss_dssp SSEEEEEECCCSC
T ss_pred CCcEEEEecCCCC
Confidence 7889999999985
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=3.7e-17 Score=146.99 Aligned_cols=251 Identities=10% Similarity=0.110 Sum_probs=164.8
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcC-CCeeEeEEeecc-cCeeeEEEeecCCeeEE-ecC------cc---CC
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIV-SAKLIKTTYHKK-HGADCVCFTHHPSSVIC-STK------YN---LD 93 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~------~~---~~ 93 (338)
+...+..++|+|+|++|++++.+ +|.+|++. +++......... .....+++++++..++. ... +. ..
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34568899999999999999988 99999997 777654332211 12334556655553222 211 00 00
Q ss_pred CCCceeEEEEcc-CCeEEEeec----CCccceEEEEEcCCCCEEEEEEC-CCeEEEEECC-Ccceee--eeee----cCc
Q 019603 94 STGESLRYLSMY-DNRILRYFK----GHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLR-VNACQG--ILRL----RGR 160 (338)
Q Consensus 94 ~~~~~i~~~~~~-~~~~~~~~~----~H~~~V~~l~~~~~~~~l~Sgs~-D~~I~iWd~~-~~~~~~--~~~~----~~~ 160 (338)
.++.+++|++. +++....+. .+...+.+++|+|++++++++.. ++.|++||+. +++... .+.. .+.
T Consensus 117 -~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 -FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp -SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred -CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 34789999997 466544433 35678999999999998877664 6899999998 665432 2321 122
Q ss_pred cEEEEcCCCCEEEEEEc-CCeEEEEeCCCCCCCCCe----eEE-ec----CCCC------ceEEEE-EcCCCCEEEEEec
Q 019603 161 PTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFD----TFL-VG----GDTA------EVCDIK-FSNDGKSMLLTTT 223 (338)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~----~~~-~~----~~~~------~i~~v~-~sp~~~~i~~~~~ 223 (338)
..+.|+|+|..++++.. ++.+.+|+.... .+.+. ... +. ++.. .+..+. |+|||++++++..
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 35789999998877764 689999976421 11111 111 11 1111 478899 9999998877765
Q ss_pred C-C-----cEEEEEcc-CCeeEEEee-eCCCCCCCeeEEECC---CCCEEEEEcCC-CcEEEEECCCC
Q 019603 224 N-N-----NIYVLDAY-GGEKRCGFS-LEPSPNTNTEATFTP---DGQYVVSGSGD-GTLHAWNINTR 279 (338)
Q Consensus 224 d-~-----~i~i~~~~-~~~~~~~~~-~~~~~~~~~~~~fs~---~~~~l~sgs~D-g~i~vWd~~~~ 279 (338)
+ + .|.+|++. +++...... ...+......++|+| +|++|++++.+ +.|++|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 3 79999985 555432211 212223456789999 89999998864 89999999765
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=2.4e-18 Score=155.51 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=185.3
Q ss_pred cceeeccCCcc-----eeEEEeecCCCEEEEeeCC---CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCc
Q 019603 19 MAAIFSDFGGK-----INSLDFHRKDDLLVTASDD---DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 19 ~~~~~~~h~~~-----V~~l~~s~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
.+..+..+... +..++|+|||++|+.++.+ ..|.+||+.+++................|++++..++....
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~- 100 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN- 100 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET-
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc-
Confidence 34455554433 7889999999998776543 36888899888754432222222223677888777765432
Q ss_pred cCCCCCceeEEEEccCCeEEEeecCCccceEE-------------------EEEcCCCCEEEEE-----ECCCeEEEEEC
Q 019603 91 NLDSTGESLRYLSMYDNRILRYFKGHKERVIS-------------------LCMSPVNDSFMSG-----SLDHSVRIWDL 146 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~-------------------l~~~~~~~~l~Sg-----s~D~~I~iWd~ 146 (338)
...+++|++.+++....+..+...... +.++|+++.++.+ ..+..|.+||+
T Consensus 101 -----~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~ 175 (396)
T 3c5m_A 101 -----ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175 (396)
T ss_dssp -----TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred -----CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence 247999999888776666655543333 3467777766543 46778999999
Q ss_pred CCcceeeeeeecC-ccEEEEcC-CCCEEEEEEcC------CeEEEEeCCCCCCCCCeeEEecCC-CCceEEEEEcCCCCE
Q 019603 147 RVNACQGILRLRG-RPTVAFDQ-QGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKS 217 (338)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~v~~sp~~~~ 217 (338)
.+++......... ...+.|+| ++..++....+ ..|.++|...... ..+.... ...+..+.|+|+|++
T Consensus 176 ~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 176 ETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----RKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----EESSCCCTTEEEEEEEECTTSSC
T ss_pred CCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----eEeeccCCCccccceEECCCCCE
Confidence 8877654443222 23478899 78766665543 3577777643221 1111111 235778899999998
Q ss_pred EEEEecC-----CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC-CCCEEEEEc----------------CCCcEEEEE
Q 019603 218 MLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGS----------------GDGTLHAWN 275 (338)
Q Consensus 218 i~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~l~sgs----------------~Dg~i~vWd 275 (338)
+++.+.+ +.+++||+.+++......... .. ..|+| +|++++.++ .++.|++||
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 8877654 349999988776544332222 22 88999 999988764 347899999
Q ss_pred CCCCCeEeEeeCCCC-----------ceEEEEEcCCCceEEeec---ceEEEeeeCCC
Q 019603 276 INTRNEVACWNGNIG-----------VVACLKWAPRRAMFVAAS---SVLSFWIPNPS 319 (338)
Q Consensus 276 ~~~~~~~~~~~~h~~-----------~v~~l~~~p~~~~l~s~s---~~~~iw~~~~~ 319 (338)
+.+++. ..+..+.. .+..++|+|+++.|+.++ ....||..+..
T Consensus 327 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~ 383 (396)
T 3c5m_A 327 TKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP 383 (396)
T ss_dssp TTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred cccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence 988765 34555544 267789999999888765 34678876644
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.1e-18 Score=170.46 Aligned_cols=265 Identities=10% Similarity=0.122 Sum_probs=176.4
Q ss_pred ceeEEEeecCCCEEEEeeC---------CCcEEEEEcCCCeeE--eEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 29 KINSLDFHRKDDLLVTASD---------DDSVRLYDIVSAKLI--KTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~---------D~~i~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.|.+++|||||++|++++. |+.|++||+.+++.+ ..+ ...+...+|++++..++... ++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-------~~ 130 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-------QN 130 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-------TT
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-------CC
Confidence 3899999999999999887 799999999998762 111 23567789999888777543 27
Q ss_pred eeEEEEccCCeEEEee-cCCccce-----------------EEEEEcCCCCEEEEEECCC--------------------
Q 019603 98 SLRYLSMYDNRILRYF-KGHKERV-----------------ISLCMSPVNDSFMSGSLDH-------------------- 139 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~-~~H~~~V-----------------~~l~~~~~~~~l~Sgs~D~-------------------- 139 (338)
.|++|++.+++..+.. .+|...| .++.|+|||++|++++.|.
T Consensus 131 ~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 210 (719)
T 1z68_A 131 NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI 210 (719)
T ss_dssp EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence 8999999888766543 3444333 4899999999999988763
Q ss_pred --------------eEEEEECCCccee---ee-----eeecC--ccEEEEcCCCCEEEEEEcC----CeEEEEe----CC
Q 019603 140 --------------SVRIWDLRVNACQ---GI-----LRLRG--RPTVAFDQQGLVFAVAMEA----GAIKLFD----SR 187 (338)
Q Consensus 140 --------------~I~iWd~~~~~~~---~~-----~~~~~--~~~~~~~~~~~~~~~~~~d----g~i~i~d----~~ 187 (338)
+|++||+.+++.. .. +..+. ...+.|+|++.++++.... ..|.+|| ..
T Consensus 211 ~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 211 NIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp EEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred eecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 8899999887652 11 10111 2357899998766664433 2477888 65
Q ss_pred CCCCCCCeeEEecCCCCceE-----EEEEcCCCCEEEE--EecCC--cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 188 SYDKGPFDTFLVGGDTAEVC-----DIKFSNDGKSMLL--TTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~-----~v~~sp~~~~i~~--~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
+.....+......++...+. .+.|+|||+.++. +..++ .+++|+..+++.. .+..+...+..+.++ +
T Consensus 291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt~~~~~v~~~~~~-d 366 (719)
T 1z68_A 291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI---QITSGKWEAINIFRV-T 366 (719)
T ss_dssp SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE---ECSCSSSCEEEEEEE-C
T ss_pred CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE---ecccCceEEEEEEEE-e
Confidence 43322221100023444444 6789999997665 33444 4677776665422 223333346667777 8
Q ss_pred CCEEEEEcCC-----CcEEEEECCC--CC-eEeEee----CCCCceEEEEEcCCCceEEee
Q 019603 259 GQYVVSGSGD-----GTLHAWNINT--RN-EVACWN----GNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 259 ~~~l~sgs~D-----g~i~vWd~~~--~~-~~~~~~----~h~~~v~~l~~~p~~~~l~s~ 307 (338)
++.|+..+.+ +.+++|.+.. +. ....+. +|...+..+.|+|+++.++..
T Consensus 367 ~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 367 QDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred CCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 8777766554 8899998764 32 233443 366788899999999877753
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=4.1e-17 Score=146.64 Aligned_cols=270 Identities=9% Similarity=0.037 Sum_probs=172.0
Q ss_pred EEEeeC--CCcEEEEEc--CCCeeEeEEe---ecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc-CCeEEEee
Q 019603 42 LVTASD--DDSVRLYDI--VSAKLIKTTY---HKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY-DNRILRYF 113 (338)
Q Consensus 42 l~s~s~--D~~i~iWd~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 113 (338)
|+.|+. ++.|.+|++ .++++..... .....+..+++++++..++.++. ..+.+|++. +++.....
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~-------~~v~~~~~~~~g~~~~~~ 77 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-------KKWSSFAVKSPTEIVHEA 77 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-------TEEEEEEEEETTEEEEEE
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc-------ceEEEEEECCCCCEEEee
Confidence 455554 256777765 4565422111 12234567788877766654432 289999997 77765433
Q ss_pred cCCc--cceEEEEEcCCCCE--EEEEE-------------CCCeEEEEECC-Ccceeeeeee----c--CccEEEEcCCC
Q 019603 114 KGHK--ERVISLCMSPVNDS--FMSGS-------------LDHSVRIWDLR-VNACQGILRL----R--GRPTVAFDQQG 169 (338)
Q Consensus 114 ~~H~--~~V~~l~~~~~~~~--l~Sgs-------------~D~~I~iWd~~-~~~~~~~~~~----~--~~~~~~~~~~~ 169 (338)
. |. +.+..++|+|++++ +++++ .++++++|++. .++....+.. . ....+.|+|+|
T Consensus 78 ~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 78 S-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp E-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred E-eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence 2 11 23456889999984 55653 79999999997 4555433332 1 22358899999
Q ss_pred CEEEEEE-cCCeEEEEeCC-CCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEcc--CCeeEE---Ee
Q 019603 170 LVFAVAM-EAGAIKLFDSR-SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY--GGEKRC---GF 241 (338)
Q Consensus 170 ~~~~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~--~~~~~~---~~ 241 (338)
..++++. .++.|++||+. ..............+......+.|+|+|+++++++. ++.+.+|+.. +++... ..
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 9777665 46899999986 322111111111112456888999999999887775 6789998764 454321 12
Q ss_pred eeC-C----CCC------CCeeEE-ECCCCCEEEEEcCCC------cEEEEECC-CCCeEe---EeeCCCCceEEEEEcC
Q 019603 242 SLE-P----SPN------TNTEAT-FTPDGQYVVSGSGDG------TLHAWNIN-TRNEVA---CWNGNIGVVACLKWAP 299 (338)
Q Consensus 242 ~~~-~----~~~------~~~~~~-fs~~~~~l~sgs~Dg------~i~vWd~~-~~~~~~---~~~~h~~~v~~l~~~p 299 (338)
... . +.. .+..++ |+|||++|+++..+. .|++|++. +++... ....+...+..++|+|
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 211 1 111 367899 999999988765432 89999996 565543 2334555678899999
Q ss_pred ---CCceEEeec---ceEEEeeeCCC
Q 019603 300 ---RRAMFVAAS---SVLSFWIPNPS 319 (338)
Q Consensus 300 ---~~~~l~s~s---~~~~iw~~~~~ 319 (338)
++++|++++ ..+.+|..+..
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 899888875 47899987654
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=1.5e-18 Score=165.52 Aligned_cols=231 Identities=7% Similarity=0.015 Sum_probs=165.5
Q ss_pred ccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEEC---CCeEEEEE
Q 019603 69 KHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSL---DHSVRIWD 145 (338)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~---D~~I~iWd 145 (338)
..++..+++++++..++..+. .++++++|++.+++..+....|...|.++.|+|+ +.+++++. +...++|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~-----~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGF-----SEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEE-----ETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEc-----cCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 346788889998888776542 1478999999777766554444478999999999 77777775 56667765
Q ss_pred CCC---cceeeeeeecCccEEEEcCCCC-EEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEE
Q 019603 146 LRV---NACQGILRLRGRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 221 (338)
Q Consensus 146 ~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~ 221 (338)
+.. +.........+....+++|+|. .+++...++.+.+||+.+.. ... +... .. ..+.|+|||++++++
T Consensus 95 ~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---~~~-l~~~-~~--~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 95 VNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---LRE-LARL-PG--FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE---EEE-EEEE-SS--CEEEEEEETTEEEEE
T ss_pred EeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc---EEE-eecC-CC--ceEEECCCCCEEEEE
Confidence 543 2222111222334567788775 33344444555599986532 111 2211 22 678899999999988
Q ss_pred ecC----CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC--cEEEEECCCCCeEeEeeCCCCceEEE
Q 019603 222 TTN----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG--TLHAWNINTRNEVACWNGNIGVVACL 295 (338)
Q Consensus 222 ~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg--~i~vWd~~~~~~~~~~~~h~~~v~~l 295 (338)
+.+ ..|++||+.+++.. ++..+...+..++|||||++|++++.|+ .|++||+.+++.. .+.+|...+.++
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~---~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~ 243 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR---VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSY 243 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE---EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce---EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhh
Confidence 876 67999998887654 3345556678999999999999888899 8999999998887 888888888888
Q ss_pred E--------EcCCCceEEeec--ceEEEeee
Q 019603 296 K--------WAPRRAMFVAAS--SVLSFWIP 316 (338)
Q Consensus 296 ~--------~~p~~~~l~s~s--~~~~iw~~ 316 (338)
+ |+||+.++++++ +.+++|.+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8 999998777775 57889976
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=3.1e-17 Score=145.50 Aligned_cols=214 Identities=12% Similarity=0.128 Sum_probs=156.7
Q ss_pred CceeEEEEccCCeEEEeecCCc-cceEEEEEcCCCCEE-EEEECCCeEEEEECCCcceeeeeeecC--------ccEEEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHK-ERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRG--------RPTVAF 165 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~-~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~~~~~~~~~--------~~~~~~ 165 (338)
++.+++||+.+++.+..+..+. ..+..++|+|+++++ ++++.++.|.+||+.+++....+.... ...+.+
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 99 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEE
Confidence 4789999999999888876543 257889999999865 566689999999999888766665432 245889
Q ss_pred cCCCCEEEEEEcC------------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc
Q 019603 166 DQQGLVFAVAMEA------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 233 (338)
Q Consensus 166 ~~~~~~~~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~ 233 (338)
+|+|..++++..+ +.+.+||+.+......... . .+...+.++.|+|+++ +++++ +.+++||..
T Consensus 100 spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~ 174 (349)
T 1jmx_B 100 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT-F-PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVK 174 (349)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE-E-ECCSSCCCEEECTTSC-EEEES--SSEEEECTT
T ss_pred CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee-c-cCCCcccceeECCCCc-EEEcc--CcEEEEeCC
Confidence 9999988888765 8999999875321111111 1 1233577889999999 55543 459999988
Q ss_pred CCeeEEEeeeCCC------------------------------------------------------------------C
Q 019603 234 GGEKRCGFSLEPS------------------------------------------------------------------P 247 (338)
Q Consensus 234 ~~~~~~~~~~~~~------------------------------------------------------------------~ 247 (338)
+++....+..... .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
T 1jmx_B 175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 254 (349)
T ss_dssp TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence 8776554432210 0
Q ss_pred CCCeeEEECC-CCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 248 NTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 248 ~~~~~~~fs~-~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
.....++|+| +|++|+++ ++.|++||+.+++.+..+... ..+.+++|+|+++.|++++ ..+.+|...
T Consensus 255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 1234567889 99999988 889999999999888777643 4578999999998777765 468888654
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=6e-16 Score=133.96 Aligned_cols=245 Identities=9% Similarity=0.119 Sum_probs=171.5
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
+|-....+++++++|+++++.+.++.|.+||.. ++.+..+... +
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~------------~----------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC------------G----------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB------------S-----------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEeccc------------C-----------------------
Confidence 344678999999999999988899999999976 4433221100 0
Q ss_pred cCCeEEEeecCCccceEEEEE-cCCCCEEEEEEC-CCeEEEEECCCcceeeeeeec---CccEEEEcCCCCEEEEEEcCC
Q 019603 105 YDNRILRYFKGHKERVISLCM-SPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLR---GRPTVAFDQQGLVFAVAMEAG 179 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~V~~l~~-~~~~~~l~Sgs~-D~~I~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg 179 (338)
.-.+|...+.++++ .++++.+++... ++.|++|| ..++....+... ....++++++|.++++...++
T Consensus 71 -------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 142 (286)
T 1q7f_A 71 -------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVM 142 (286)
T ss_dssp -------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTT
T ss_pred -------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCC
Confidence 01235567788899 466666666543 89999999 456555444322 233578999999888877889
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 259 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 259 (338)
.|.+||... . ....+....+...+..+.++|+++.+++...++.|++|+.. ++....+...++......++++|+|
T Consensus 143 ~i~~~~~~g-~--~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G 218 (286)
T 1q7f_A 143 RVIIFDQNG-N--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG 218 (286)
T ss_dssp EEEEECTTS-C--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC
T ss_pred EEEEEcCCC-C--EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCC
Confidence 999998532 1 11111111334568899999999877776778999999974 4444444433333567889999999
Q ss_pred CEEEEEcCCC-cEEEEECCCCCeEeEeeCCCC--ceEEEEEcCCCceEEeec-ceEEEeeeCC
Q 019603 260 QYVVSGSGDG-TLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS-SVLSFWIPNP 318 (338)
Q Consensus 260 ~~l~sgs~Dg-~i~vWd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~l~s~s-~~~~iw~~~~ 318 (338)
.++++...++ .|++|+. +++.+..+..+.. .+.+++|+|+++++++.. ..+++|.+..
T Consensus 219 ~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 219 EILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 9999988886 9999996 4667777765543 478999999999888753 5799997654
No 168
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=4.7e-17 Score=149.74 Aligned_cols=202 Identities=11% Similarity=0.059 Sum_probs=137.0
Q ss_pred cCCcceeEEEeecCCCEEE----EeeCCCcEEEEEcCCC--------ee---EeEEeecccCeeeEEEeecCCeeEEecC
Q 019603 25 DFGGKINSLDFHRKDDLLV----TASDDDSVRLYDIVSA--------KL---IKTTYHKKHGADCVCFTHHPSSVICSTK 89 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~----s~s~D~~i~iWd~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
.|.+.|++++|+|+|++|+ +|+.|++|+|||+.++ +. +....+|...+..++|++.....+++.
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~- 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC- 168 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE-
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE-
Confidence 4678899999999999999 8999999999998654 21 233344667788888887633333322
Q ss_pred ccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec---------Cc
Q 019603 90 YNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR---------GR 160 (338)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~---------~~ 160 (338)
+.++++++||+.++.......+|...|++++|+|++++|++|+.|++|++||++ ++....+..+ ..
T Consensus 169 ----s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 169 ----LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp ----ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred ----ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeE
Confidence 235899999999988777778899999999999999999999999999999998 4443333322 12
Q ss_pred cEEEEcCCCCEEEE-EEcCC------eEEEEeCCCCCCC-CCeeEEe-------cCCCCceEEEEEcCCCCEEEEEec-C
Q 019603 161 PTVAFDQQGLVFAV-AMEAG------AIKLFDSRSYDKG-PFDTFLV-------GGDTAEVCDIKFSNDGKSMLLTTT-N 224 (338)
Q Consensus 161 ~~~~~~~~~~~~~~-~~~dg------~i~i~d~~~~~~~-~~~~~~~-------~~~~~~i~~v~~sp~~~~i~~~~~-d 224 (338)
..+.|++++.++++ ...+| .+++|+++..... +...... .+....-..+.+-++.+++++++. .
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred EEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence 34677887766544 33443 3889998754211 1110100 111222223344477777666554 4
Q ss_pred CcEEEEEc
Q 019603 225 NNIYVLDA 232 (338)
Q Consensus 225 ~~i~i~~~ 232 (338)
..|.++..
T Consensus 324 ~dv~vl~~ 331 (434)
T 2oit_A 324 TEVSILAR 331 (434)
T ss_dssp SBCEEEEE
T ss_pred CceeEEEe
Confidence 55777664
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=1.4e-16 Score=141.17 Aligned_cols=264 Identities=10% Similarity=0.064 Sum_probs=183.1
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
-+.+.+|+++|+|+++++.+.++.+++++....... ...... -...+.+.+||..+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~~i~~~d~~~ 78 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVY---QQRGLG---------------------PIEEDTILVIDPNN 78 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCB---SCGGGC---------------------SCCSCCEEEECTTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceee---cccccc---------------------cccCCcEEEEECCC
Confidence 367999999999999999988876655443322111 000000 01236788888887
Q ss_pred CeEEEeec-CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeeeeee-----------cCccEEEEcC-CCCEE
Q 019603 107 NRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRL-----------RGRPTVAFDQ-QGLVF 172 (338)
Q Consensus 107 ~~~~~~~~-~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~-~~~~~~~-----------~~~~~~~~~~-~~~~~ 172 (338)
++.+..+. ++-....+++++|+++.+++.+.++.|++||..... ....+.. .....++++| ++.++
T Consensus 79 g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 79 AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp CCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred CeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence 87766654 566789999999999999999999999999985442 3333311 1223488999 88888
Q ss_pred EEEE-cCCeEEEEeCCCCCCCCCeeEEecC--------CCCceEEEEEcCC-CCEEEEEecCCcEEEEEccCCeeEEEee
Q 019603 173 AVAM-EAGAIKLFDSRSYDKGPFDTFLVGG--------DTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 173 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~i~~v~~sp~-~~~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
++.+ .++.|++||.. .. ....+...+ +......++++|+ +..+++...++.|++|+..+++....+.
T Consensus 159 v~d~~~~~~I~~~~~~-g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPS-GK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEECSSCCEEEEECTT-SC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEeCCCCCeEEEEcCC-CC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 8886 78999999832 11 111111111 1233788999998 6666666678899999988788777665
Q ss_pred eCCCCCCCeeEEECC------CCCEEEEEcCCCcEEEEECCCCCeEeEe---eCCCCceEEEEEcCCCceEEeecc--eE
Q 019603 243 LEPSPNTNTEATFTP------DGQYVVSGSGDGTLHAWNINTRNEVACW---NGNIGVVACLKWAPRRAMFVAASS--VL 311 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~------~~~~l~sgs~Dg~i~vWd~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~--~~ 311 (338)
...+...+..++|+| +|..+++...+..|++|+..+++.+..+ .++.....+|+++|++.++++... .|
T Consensus 236 ~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 236 HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 555555677889999 4443344445569999999999999888 367788999999999987777654 56
Q ss_pred EEeeeC
Q 019603 312 SFWIPN 317 (338)
Q Consensus 312 ~iw~~~ 317 (338)
.+|.+.
T Consensus 316 ~~~~~~ 321 (329)
T 3fvz_A 316 WKFTLT 321 (329)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 666544
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=2.2e-15 Score=133.82 Aligned_cols=261 Identities=7% Similarity=0.057 Sum_probs=171.3
Q ss_pred cceeEEEeecCCCEEEEee---------CCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 28 GKINSLDFHRKDDLLVTAS---------DDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s---------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
..+....| ||+.++... .+..|.+||+.+++... + ..+....|++++..++...... ......
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~-~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANE-EKKVSE 86 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEET-TTTEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEecc-CCCcce
Confidence 45677788 888776542 36789999999876532 2 3456678888887776544211 001235
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC---------------------------CeEEEEECCCcce
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD---------------------------HSVRIWDLRVNAC 151 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---------------------------~~I~iWd~~~~~~ 151 (338)
+.+|++.+++..+....+ . +..+.|+|+++.|+.++.+ ..|.+||+..++.
T Consensus 87 l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 87 IWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred EEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 788888888776655444 3 9999999999988877643 5799999988776
Q ss_pred eeeeeecCccEEEEcCCCCEEEEEEcCC-------eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC
Q 019603 152 QGILRLRGRPTVAFDQQGLVFAVAMEAG-------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 224 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d 224 (338)
...+.......+.|+|+| +++++..++ ...+|.+.. ..... +.. + ..+..+ +|+|+++++.+.+
T Consensus 165 ~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~---~~~~~-l~~-~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 165 IEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED---GKEEK-MFE-K-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp EEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---TEEEE-EEE-E-ESEEEE--EECSSCEEEEECC
T ss_pred EeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCC---CceEE-ecc-C-cceeeE--CCCCCEEEEEEcc
Confidence 233332244568899999 777665542 345554332 11111 111 2 334443 9999998888754
Q ss_pred C--------cEEEEEccCCeeEEEeeeCCCCCCCee-EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEE
Q 019603 225 N--------NIYVLDAYGGEKRCGFSLEPSPNTNTE-ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL 295 (338)
Q Consensus 225 ~--------~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l 295 (338)
+ .+++|+ +++.... ...+...+.. +.|+ ++ ++++++.|+.+++| +.+++.. .+..+.+.|.++
T Consensus 236 ~~~~~~~~~~l~~~d--~~~~~~l--~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~ 307 (347)
T 2gop_A 236 EKKYMSEHNKLYIYD--GKEVMGI--LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGF 307 (347)
T ss_dssp SSSCCCSSCEEEEEC--SSCEEES--STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEE
T ss_pred ccCCccccceEEEEC--CCceEec--cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEee
Confidence 3 577787 4443221 1233445665 8899 88 99999999999999 8866554 444557899999
Q ss_pred EEcCCCceEEeec--ce-EEEeeeC
Q 019603 296 KWAPRRAMFVAAS--SV-LSFWIPN 317 (338)
Q Consensus 296 ~~~p~~~~l~s~s--~~-~~iw~~~ 317 (338)
+|+| .++++++ .. ..||..+
T Consensus 308 ~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 308 DVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeC--cEEEEEcCCCChHHheEeC
Confidence 9999 5555554 23 4788876
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=1.1e-15 Score=137.26 Aligned_cols=273 Identities=11% Similarity=0.080 Sum_probs=182.8
Q ss_pred CCCEEEEee------CCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC----CCCCceeEEEEccCC
Q 019603 38 KDDLLVTAS------DDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL----DSTGESLRYLSMYDN 107 (338)
Q Consensus 38 ~~~~l~s~s------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~ 107 (338)
++++++.+. .|++|.+||..+++.+..+.....+ .+.+++++..++.+..+.- ...++++.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556555543 4789999999999887766544332 6788888777776542100 012367999999998
Q ss_pred eEEEeecCC------ccceEEEEEcCCCCEEEEEEC--CCeEEEEECCCcceeee-eeecCccEEEEcCCC-CEEEEEEc
Q 019603 108 RILRYFKGH------KERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGI-LRLRGRPTVAFDQQG-LVFAVAME 177 (338)
Q Consensus 108 ~~~~~~~~H------~~~V~~l~~~~~~~~l~Sgs~--D~~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ 177 (338)
+.+..+..+ ......++++|++++|+.+.. +++|.+||+.+++.... +...+...+.+.|++ ..+++.+.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence 888776532 245667899999999887764 68999999999887665 544333334566765 57778888
Q ss_pred CCeEEEEeCCCCCCCCCe-eE----EecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE--EEeeeCC-----
Q 019603 178 AGAIKLFDSRSYDKGPFD-TF----LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEP----- 245 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~-~~----~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~--~~~~~~~----- 245 (338)
||.+.+++...... .. .. ........+ .+.++|++..++..+.++.++++|...+... ..+....
T Consensus 172 dg~~~~v~~~~~g~--~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 172 DGGLLTINLGEDGK--VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp TSSEEEEEECTTSS--EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCcEEEEEECCCCc--EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 89888888643111 10 00 001111111 2234677777788888899999997644321 1222111
Q ss_pred ---CCCCCeeEEECCCCCEEEEEcC-----------CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-ce
Q 019603 246 ---SPNTNTEATFTPDGQYVVSGSG-----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SV 310 (338)
Q Consensus 246 ---~~~~~~~~~fs~~~~~l~sgs~-----------Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~ 310 (338)
.+.....++|+|+++.++.+.+ .+.|.+||..+++.+..+..+. +++|+|+|++++|+++. .+
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~ 326 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGN 326 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSC
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCe
Confidence 0111223789999888776543 3489999999999999998876 99999999999888776 57
Q ss_pred EEEeeeC
Q 019603 311 LSFWIPN 317 (338)
Q Consensus 311 ~~iw~~~ 317 (338)
+.+|...
T Consensus 327 v~v~D~~ 333 (361)
T 2oiz_A 327 VNVYDIS 333 (361)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 8888544
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=1e-14 Score=126.89 Aligned_cols=244 Identities=11% Similarity=0.074 Sum_probs=169.3
Q ss_pred HHHhccccceeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCc
Q 019603 12 ETVRSMAMAAIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKY 90 (338)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
+.+..-.....+..+.....++.|+|+|+ +++++..++.|..||..++ ...
T Consensus 12 ~~~~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------------- 63 (296)
T 3e5z_A 12 DLFPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------------- 63 (296)
T ss_dssp GGSCTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE--------------------------
T ss_pred hhcCCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE--------------------------
Confidence 34444445566667777789999999998 7888888999999998754 211
Q ss_pred cCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee-c-----CccEEE
Q 019603 91 NLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-R-----GRPTVA 164 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~-~-----~~~~~~ 164 (338)
+..+...+.+++++++++.+++.+.++.|.+||.++++....... . ....+.
T Consensus 64 ----------------------~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~ 121 (296)
T 3e5z_A 64 ----------------------EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVC 121 (296)
T ss_dssp ----------------------EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEE
T ss_pred ----------------------EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEE
Confidence 112334578899999999888877789999999987775433221 1 123488
Q ss_pred EcCCCCEEEEEEc-----------------CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcE
Q 019603 165 FDQQGLVFAVAME-----------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 227 (338)
Q Consensus 165 ~~~~~~~~~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i 227 (338)
++++|.++++... .+.|..++.. ..+.. ..........+.|+|+++.+++.+.++.|
T Consensus 122 ~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~--~~~~~~~~~gi~~s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 122 LAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GTLSA--PIRDRVKPNGLAFLPSGNLLVSDTGDNAT 195 (296)
T ss_dssp ECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SCEEE--EECCCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred ECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----CCEEE--eecCCCCCccEEECCCCCEEEEeCCCCeE
Confidence 9999998886321 2355555532 11211 22344557889999999988666667899
Q ss_pred EEEEcc-CCee---EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEE-cCCCc
Q 019603 228 YVLDAY-GGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW-APRRA 302 (338)
Q Consensus 228 ~i~~~~-~~~~---~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~-~p~~~ 302 (338)
++|+.. .+.. ...+ ......+..++++++|.++++. ++.|++||.. ++.+..+..+.+ +.+++| .|+++
T Consensus 196 ~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~ 269 (296)
T 3e5z_A 196 HRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGR 269 (296)
T ss_dssp EEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSC
T ss_pred EEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCC
Confidence 999986 4443 2223 2234456789999999987776 7899999986 778888888877 999999 58988
Q ss_pred eEEeecceEEEeeeCC
Q 019603 303 MFVAASSVLSFWIPNP 318 (338)
Q Consensus 303 ~l~s~s~~~~iw~~~~ 318 (338)
.|+.++.. .+|...+
T Consensus 270 ~L~v~t~~-~l~~~~~ 284 (296)
T 3e5z_A 270 TLYMTVST-EFWSIET 284 (296)
T ss_dssp EEEEEETT-EEEEEEC
T ss_pred EEEEEcCC-eEEEEEc
Confidence 77776543 4555443
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=5.2e-15 Score=130.80 Aligned_cols=276 Identities=13% Similarity=0.109 Sum_probs=183.4
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
.+.|+++.|++++..+++.+.++.++.| .+.....+.........+.++.++. ++... ..++.+.+|+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~-----~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ-LFLLD-----VFEGNIFKINPET 75 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC-EEEEE-----TTTCEEEEECTTT
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCC-EEEEE-----CCCCEEEEEeCCC
Confidence 3557889999999888888899999999 3444444444444556667765544 33221 2246899999988
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECC----CeEEEEECCCcceeeeeee----cCccEEEEcCCCCEEEEEEc-
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLD----HSVRIWDLRVNACQGILRL----RGRPTVAFDQQGLVFAVAME- 177 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D----~~I~iWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~- 177 (338)
++.......+...+.+++++|+++++++...+ +.|.+||...++....+.. .....+.++++|.++++...
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 87666555677889999999999988877776 7899999887765322221 11234788999987776553
Q ss_pred -----CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEccC-CeeEEEe------eeC
Q 019603 178 -----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYG-GEKRCGF------SLE 244 (338)
Q Consensus 178 -----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~~-~~~~~~~------~~~ 244 (338)
.+.+..+|.... .+..+. ........+.|+|+++.++++ ..++.|++|+..+ +.....+ ...
T Consensus 156 ~~~~~~~~l~~~~~~~~---~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFR---TVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp BTTBCCEEEEEECTTSC---CEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred cccCCCceEEEEeCCCC---EEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 245555554321 111111 112346788999999866555 4578999999853 3222111 111
Q ss_pred CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCC------ceEEEEEcCCCceEEeecc------eEE
Q 019603 245 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG------VVACLKWAPRRAMFVAASS------VLS 312 (338)
Q Consensus 245 ~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~------~v~~l~~~p~~~~l~s~s~------~~~ 312 (338)
.+ .....++++++|.++++...++.|++||. +++.+..+..+.. .+.+++|+|++..|+.++. ...
T Consensus 231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~ 308 (333)
T 2dg1_A 231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSM 308 (333)
T ss_dssp SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEE
T ss_pred CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCce
Confidence 11 34567999999999888888899999998 5667777765433 6899999999865554432 246
Q ss_pred EeeeCC
Q 019603 313 FWIPNP 318 (338)
Q Consensus 313 iw~~~~ 318 (338)
||.++.
T Consensus 309 l~~~~~ 314 (333)
T 2dg1_A 309 LYTVNG 314 (333)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 665543
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=1e-15 Score=138.06 Aligned_cols=243 Identities=10% Similarity=0.072 Sum_probs=161.0
Q ss_pred EEEcCCCeeEeEEeecccCeee-----EEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcC
Q 019603 53 LYDIVSAKLIKTTYHKKHGADC-----VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSP 127 (338)
Q Consensus 53 iWd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~ 127 (338)
.+|..++..+..+..+...... .+|++++..++..+.. .....+.+|++.+++..+...+|...+.++.|+|
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF---DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC---CCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence 3467777766666554433332 5678887777665431 1123588899999998888888877777788999
Q ss_pred CCCEEEEEECCCeEEEEECCCcceeeeeeecCccE----EEEcCCCCEEEEEE----------------------cCCeE
Q 019603 128 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAM----------------------EAGAI 181 (338)
Q Consensus 128 ~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------------------~dg~i 181 (338)
+++.|+.++.++.|++||+.+++............ ..+++++..++... .+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 99999999999999999999887765555443321 34588998876432 33678
Q ss_pred EEEeCCCCCCCCCeeEEecCCCCceEEEEEcC-CCCEEEEEecC------CcEEEEEccCCeeEEEeeeCCCC--CCCee
Q 019603 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSP--NTNTE 252 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~i~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~--~~~~~ 252 (338)
.+||+.+.. ... +..+...+..+.|+| +|+.++++..+ ..+++++..+++... +..+. ..+..
T Consensus 171 ~~~d~~~g~---~~~--l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~ 242 (388)
T 3pe7_A 171 MRVDLKTGE---STV--ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK---VKTHAEGESCTH 242 (388)
T ss_dssp EEEETTTCC---EEE--EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE---SCCCCTTEEEEE
T ss_pred EEEECCCCc---eEE--eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE---eeeCCCCccccc
Confidence 888877542 111 223345688899999 99999887763 378888876554332 22222 24667
Q ss_pred EEECCCCCEEEEEcC-CC----cEEEEECCCCCeE--eEeeCCCCc---eEEEEEcCCCceEEe
Q 019603 253 ATFTPDGQYVVSGSG-DG----TLHAWNINTRNEV--ACWNGNIGV---VACLKWAPRRAMFVA 306 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~-Dg----~i~vWd~~~~~~~--~~~~~h~~~---v~~l~~~p~~~~l~s 306 (338)
.+|+|||+.|+..+. ++ .|++||+.+++.. ..+.++... ...++|+||++.|+.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 899999997765432 22 3999999988743 333331111 122479999998874
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=1.6e-14 Score=140.98 Aligned_cols=252 Identities=11% Similarity=0.062 Sum_probs=165.8
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCC-----cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCC------
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDD-----SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD------ 93 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 93 (338)
+|...+.+++|||||++|+.++.++ .|++||+.+++.+...... ..+..++|++++..++......-.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555788999999999988776544 8999999999876532222 225567888888877765432110
Q ss_pred ----CCCceeEEEEccCCe----EEEeecCCccceEEEEEcCCCCEEEEEEC-----CCeEEEEECCC------cc-eee
Q 019603 94 ----STGESLRYLSMYDNR----ILRYFKGHKERVISLCMSPVNDSFMSGSL-----DHSVRIWDLRV------NA-CQG 153 (338)
Q Consensus 94 ----~~~~~i~~~~~~~~~----~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~-----D~~I~iWd~~~------~~-~~~ 153 (338)
.-...+++|++.++. .+.....|...+.++.|+|++++|+.++. +..|.+||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 002358999998765 33333446777899999999999887665 67899999976 42 223
Q ss_pred eeeecC-ccEEEEcCCCCEEEEEEcC----CeEEEEeCCCCCCCCCeeEEecCCC-CceEEEEEcCCCCEEEEEecCCc-
Q 019603 154 ILRLRG-RPTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTTTNNN- 226 (338)
Q Consensus 154 ~~~~~~-~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~v~~sp~~~~i~~~~~d~~- 226 (338)
.+..+. .....++++|..++..+.. ..|.+||+........ ..++.... ..+..+.|++++..+++...++.
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW-KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC-EEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc-eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 333222 2234578888877766653 3588899765321111 22232222 35778889877777777777774
Q ss_pred -EEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEE----EcCCCcEEEEECCCCC
Q 019603 227 -IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS----GSGDGTLHAWNINTRN 280 (338)
Q Consensus 227 -i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~s----gs~Dg~i~vWd~~~~~ 280 (338)
+++|+..+++....+.. +...+..++++|+++.|+. ....++|+.||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 56677656654443333 3456777889999976652 2345789999998876
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=2.8e-15 Score=147.12 Aligned_cols=276 Identities=10% Similarity=0.109 Sum_probs=171.8
Q ss_pred ceeeccCCcc-----eeEEEeecCCCEEEEeeCC---------CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeE
Q 019603 20 AAIFSDFGGK-----INSLDFHRKDDLLVTASDD---------DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVI 85 (338)
Q Consensus 20 ~~~~~~h~~~-----V~~l~~s~~~~~l~s~s~D---------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (338)
...+.+|... ...+.|||||++|+.++.| +.+.+||+.+++... +..+...+....|++++..++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la 127 (740)
T 4a5s_A 49 SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLA 127 (740)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEE
T ss_pred EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEE
Confidence 3455666533 3458899999999999987 456699999988653 344445677889999988877
Q ss_pred EecCccCCCCCceeEEEEccCCeEEEe-ecCCccce-----------------EEEEEcCCCCEEEEEECCC--------
Q 019603 86 CSTKYNLDSTGESLRYLSMYDNRILRY-FKGHKERV-----------------ISLCMSPVNDSFMSGSLDH-------- 139 (338)
Q Consensus 86 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~H~~~V-----------------~~l~~~~~~~~l~Sgs~D~-------- 139 (338)
... ++.|++|++.+++..+. ..++...+ .++.|+|||++|+.++.|.
T Consensus 128 ~~~-------~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 128 YVW-------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp EEE-------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred EEE-------CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 543 27899999988776553 23444433 3489999999999886443
Q ss_pred ----------------------------eEEEEECCC---cceeeeeee--------cC--ccEEEEcCCCCEEEEEEcC
Q 019603 140 ----------------------------SVRIWDLRV---NACQGILRL--------RG--RPTVAFDQQGLVFAVAMEA 178 (338)
Q Consensus 140 ----------------------------~I~iWd~~~---~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~d 178 (338)
+|++||+.+ +++...... +. ...+.|+|+|..++.....
T Consensus 201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r 280 (740)
T 4a5s_A 201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR 280 (740)
T ss_dssp EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES
T ss_pred EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC
Confidence 488899887 632111222 11 2347899999866655432
Q ss_pred ----CeEEEEeCCCCC----CCCCeeEEecCCCCceE-----EEEEcCCCCEEE-EEec-C--CcEEEEEccCCeeEEEe
Q 019603 179 ----GAIKLFDSRSYD----KGPFDTFLVGGDTAEVC-----DIKFSNDGKSML-LTTT-N--NNIYVLDAYGGEKRCGF 241 (338)
Q Consensus 179 ----g~i~i~d~~~~~----~~~~~~~~~~~~~~~i~-----~v~~sp~~~~i~-~~~~-d--~~i~i~~~~~~~~~~~~ 241 (338)
..|++||..+.. +.........++...+. ...|+|||+.++ ..+. + ..|++|+..+++...
T Consensus 281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-- 358 (740)
T 4a5s_A 281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-- 358 (740)
T ss_dssp STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE--
T ss_pred CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe--
Confidence 378999987654 21122222233433332 578999999877 5553 3 358888887665432
Q ss_pred eeCCCCCCCeeEEECCCCCEEE-EEcC----CC--cEEEEECCCCCeEeEee----CCCCceEEEEEcCCCceEEee
Q 019603 242 SLEPSPNTNTEATFTPDGQYVV-SGSG----DG--TLHAWNINTRNEVACWN----GNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 242 ~~~~~~~~~~~~~fs~~~~~l~-sgs~----Dg--~i~vWd~~~~~~~~~~~----~h~~~v~~l~~~p~~~~l~s~ 307 (338)
+....-.+..+. .++++.|+ ++.. .+ .|+..++..++....+. +....+....|+|++++++..
T Consensus 359 -lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~ 433 (740)
T 4a5s_A 359 -ITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLR 433 (740)
T ss_dssp -SCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEE
T ss_pred -cccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEE
Confidence 222222333332 24465544 4444 23 45555555443333443 234678899999999976654
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=2.5e-12 Score=111.19 Aligned_cols=274 Identities=8% Similarity=0.069 Sum_probs=182.6
Q ss_pred eccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEe-ecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 23 FSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTY-HKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
+..+...+.++.++++|.+.++...++.|.+||.. ++...... .....+..+.+..++...+ +. ..++.+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~-----~~~~~i~~ 82 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWF-TE-----NAANKIGR 82 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEE-EE-----TTTTEEEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEE-eC-----CCCCeEEE
Confidence 44566789999999999988887778999999988 55432211 1223445555554443222 21 12356778
Q ss_pred EEccCCeEE-EeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee---cCccEEEEcCCCCEEEEEEc
Q 019603 102 LSMYDNRIL-RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---RGRPTVAFDQQGLVFAVAME 177 (338)
Q Consensus 102 ~~~~~~~~~-~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 177 (338)
|+.. ++.. ..+..+...+.++.++++++.+++...++.|.+||. .++....... .....+.++++|.++++...
T Consensus 83 ~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 83 ITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred ECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 8765 3322 222235567899999999988888778899999998 5543321111 11234788999988877777
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 257 (338)
++.+..||. .. .+..+........+..+.++|+++.+++...++.+.+++. +++.. .+........+..+++++
T Consensus 161 ~~~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 NNAIGRITE-SG---DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGA 234 (299)
T ss_dssp TTEEEEECT-TC---CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECS
T ss_pred CCEEEEEcC-CC---cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECC
Confidence 789999986 32 2222222233446788999999986666656788999998 66543 343333445678899999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeEeEe--eCCCCceEEEEEcCCCceEEeec-ceEEEe
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEVACW--NGNIGVVACLKWAPRRAMFVAAS-SVLSFW 314 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw 314 (338)
+|..+++...++.|.+||. +++ +..+ ..+...+.++++ +++.++++.+ ..+..+
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred CCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 9998887778899999998 443 3333 345578999999 9999888764 334333
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.67 E-value=1.5e-14 Score=140.82 Aligned_cols=257 Identities=12% Similarity=0.039 Sum_probs=161.6
Q ss_pred cCCcceeEEEeecCCCEEE-----EeeCCCcEEEEEcCCCeeE-eEEeecccCeeeEEEeecCCeeEEecCccCC-----
Q 019603 25 DFGGKINSLDFHRKDDLLV-----TASDDDSVRLYDIVSAKLI-KTTYHKKHGADCVCFTHHPSSVICSTKYNLD----- 93 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~-----s~s~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 93 (338)
+|...+.+++|||||++|+ +|+.+..|++||+.+++.+ .... .......++|++++..++..+...-.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 5666799999999999988 6666789999999998765 2111 11112567888887777765431100
Q ss_pred --CCCceeEEEEccCCe----EEEeecCCccceEEEEEcCCCCEEEEEECCC----eEEEEECCCcceeeeeeecCc-cE
Q 019603 94 --STGESLRYLSMYDNR----ILRYFKGHKERVISLCMSPVNDSFMSGSLDH----SVRIWDLRVNACQGILRLRGR-PT 162 (338)
Q Consensus 94 --~~~~~i~~~~~~~~~----~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~----~I~iWd~~~~~~~~~~~~~~~-~~ 162 (338)
.....+++|++.++. ++.....|...+.++.|+|+|++|+.++.++ .|.+||...++.......... ..
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 276 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE 276 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE
Confidence 012359999998765 4444556778899999999999988877776 677777655543322222222 22
Q ss_pred EEEcCCCCEEEEEEc----CCeEEEEeCCCCCCCCCeeEEecCC-CCceEEEEEcCCCCEEEEEecCCcEEEEEcc-CCe
Q 019603 163 VAFDQQGLVFAVAME----AGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGE 236 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~-~~~ 236 (338)
..+ ++|. ++..+. ++.|.+||+......... .++..+ ...+..+.++ ++..+++...++..++|... .+.
T Consensus 277 ~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 277 VHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWK-EIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCE-EEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCe-EEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 333 5666 444443 578999997653211112 223232 4457778887 56667777778877776543 343
Q ss_pred eEEEeeeCCCCCCCeeEEECCCCCEEE----EEcCCCcEEEEECCCCCeEeEeeCC
Q 019603 237 KRCGFSLEPSPNTNTEATFTPDGQYVV----SGSGDGTLHAWNINTRNEVACWNGN 288 (338)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~fs~~~~~l~----sgs~Dg~i~vWd~~~~~~~~~~~~h 288 (338)
....+.+. ....+..++++|+++.|+ +....++|++||+.+++. ..++.+
T Consensus 353 ~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~~ 406 (695)
T 2bkl_A 353 PVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAKV 406 (695)
T ss_dssp EEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEEC
T ss_pred eeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEecC
Confidence 33322221 134566778899998777 444567899999988764 345443
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=2.5e-13 Score=120.13 Aligned_cols=254 Identities=9% Similarity=0.089 Sum_probs=170.3
Q ss_pred CCCcEEEEEcCCCeeEeEEeec----c--cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccce
Q 019603 47 DDDSVRLYDIVSAKLIKTTYHK----K--HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERV 120 (338)
Q Consensus 47 ~D~~i~iWd~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V 120 (338)
.+++|.+||.++++....+... . .....+.+ ++..++.+.. .++.+.++|..+++.+..+. .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~-----~~~~v~viD~~t~~~~~~i~-~~~~p 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVN-----NSHVIFAIDINTFKEVGRIT-GFTSP 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEG-----GGTEEEEEETTTCCEEEEEE-CCSSE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEc-----CCCEEEEEECcccEEEEEcC-CCCCC
Confidence 4899999999999876543211 1 11222333 4455554432 23789999999999888885 34678
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC------cc-EEEEcCCCCEEEEEE-cCCeEEEEeCCCCCCC
Q 019603 121 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG------RP-TVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKG 192 (338)
Q Consensus 121 ~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~ 192 (338)
..++++++++.+++...++.|.+||+.+++....+.... .+ .+++ .++.++++.. .++.|.++|.++...
T Consensus 87 ~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~- 164 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKV- 164 (328)
T ss_dssp EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEE-
T ss_pred cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeE-
Confidence 899998888656666589999999999988776666543 22 3555 3444455544 488999999875421
Q ss_pred CCeeEEecCCCCceEEEEEcCCCCEEEEEecC----------CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEE
Q 019603 193 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 262 (338)
Q Consensus 193 ~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d----------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l 262 (338)
...... ......+.++|+|++++++..+ +.|.++|..+++....+..... .....++|+|++++|
T Consensus 165 -~~~i~~---g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 165 -VDELTI---GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTL 239 (328)
T ss_dssp -EEEEEC---SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-CCCEEEEECTTSCEE
T ss_pred -EEEEEc---CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC-CCceeEEEecCCCEE
Confidence 111111 1234567889999866665544 6899999988876655543321 257889999999999
Q ss_pred EEEcCCCcEEEEECCCCCeEe--EeeCCCCceEEEEEcC-CCceEEee----c--ceEEEeeeC
Q 019603 263 VSGSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWAP-RRAMFVAA----S--SVLSFWIPN 317 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~~~~--~~~~h~~~v~~l~~~p-~~~~l~s~----s--~~~~iw~~~ 317 (338)
+.+.. .|++||..+++... .+..+.....+++++| ++.++++. . ..+.+|.+.
T Consensus 240 yv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 240 YWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 88765 89999998877532 1222246789999999 56666765 3 346666433
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=1.8e-14 Score=129.92 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=152.4
Q ss_pred EEcCCCeeEeEEeecccC-----eeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCC
Q 019603 54 YDIVSAKLIKTTYHKKHG-----ADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPV 128 (338)
Q Consensus 54 Wd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~ 128 (338)
.|..++..+..+...... +....|++++..++..... .....+.+|++.+++..+...++......+.|+|+
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~---~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF---DGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---TSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec---CCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 366777665555433222 4456777777776654331 12246888899888776655444433334789999
Q ss_pred CCEEEEEECCCeEEEEECCCcceeeeeeecCcc--E-------------------EEEcCCCCEEEEE-----EcCCeEE
Q 019603 129 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--T-------------------VAFDQQGLVFAVA-----MEAGAIK 182 (338)
Q Consensus 129 ~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~~-----~~dg~i~ 182 (338)
+++|+.++.++.|++||+..++........... . ..++|++..++.. ..+..|.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 999999999999999999887755444422211 1 1235555544332 3456788
Q ss_pred EEeCCCCCCCCCeeEEecCCCCceEEEEEcC-CCCEEEEEecC------CcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 183 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~i~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
+||+.... ... +. .+...+..+.|+| +++.+++.+.+ ..+++++..+++...... ......+..++|
T Consensus 172 ~~d~~~g~---~~~-~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~ 245 (396)
T 3c5m_A 172 KVDIETGE---LEV-IH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFW 245 (396)
T ss_dssp EEETTTCC---EEE-EE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEE
T ss_pred EEECCCCc---EEe-ec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEE
Confidence 88876532 111 11 2355688899999 78877776653 358888876554332211 111124667899
Q ss_pred CCCCCEEEEEcCC-----CcEEEEECCCCCeEeEeeCCCCceEEEEEcC-CCceEEee
Q 019603 256 TPDGQYVVSGSGD-----GTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAA 307 (338)
Q Consensus 256 s~~~~~l~sgs~D-----g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~ 307 (338)
+|+|++|+.++.+ +.|++||+.+++....... .+ .. +.|+| ++++++.+
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGD 300 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEE
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEe
Confidence 9999988776544 4599999988765443322 22 33 89999 99988864
No 181
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=4.4e-14 Score=136.58 Aligned_cols=290 Identities=10% Similarity=-0.008 Sum_probs=172.1
Q ss_pred ceeeccCCccee---------EEEee--cCCCE-EEEeeC-CCcEEEEEcC--C-CeeEeEEee-----cccCeeeEEEe
Q 019603 20 AAIFSDFGGKIN---------SLDFH--RKDDL-LVTASD-DDSVRLYDIV--S-AKLIKTTYH-----KKHGADCVCFT 78 (338)
Q Consensus 20 ~~~~~~h~~~V~---------~l~~s--~~~~~-l~s~s~-D~~i~iWd~~--~-~~~~~~~~~-----~~~~~~~~~~~ 78 (338)
...+..|...|. ...|+ |||+. |+.++. +..|.+|++. . +. ...+.. +...+...+|+
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC
Confidence 345666766666 66666 99998 665553 4556666654 2 33 333333 23345667888
Q ss_pred ecCCeeEEecCccC----CCCCceeEEEEccC------CeEEEeec-CCccceEEEEEcCCCCEEEEEECCC--------
Q 019603 79 HHPSSVICSTKYNL----DSTGESLRYLSMYD------NRILRYFK-GHKERVISLCMSPVNDSFMSGSLDH-------- 139 (338)
Q Consensus 79 ~~~~~~~~~~~~~~----~~~~~~i~~~~~~~------~~~~~~~~-~H~~~V~~l~~~~~~~~l~Sgs~D~-------- 139 (338)
+++..+++.+...- ......+++|++.+ ++.. .+. .+...+..++|+|||++|+.++.++
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~ 217 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGT 217 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCE
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCc
Confidence 88877776543100 01114789999987 5554 444 5667888999999999999888664
Q ss_pred eEEEEECC-Cc---ceeeeeeec--CccEEEEcCCCCEEEEEEcCC--eEEEEeCCCCCCCCCeeEEecCCCCc------
Q 019603 140 SVRIWDLR-VN---ACQGILRLR--GRPTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAE------ 205 (338)
Q Consensus 140 ~I~iWd~~-~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~------ 205 (338)
.|++||+. ++ +.......+ ....+.|+|+|.+++++..++ .|.+||..... . ..+...+...
T Consensus 218 ~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~---~-~~l~~~~~~~~~p~w~ 293 (662)
T 3azo_A 218 ELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA---A-TQLCRREEEFAGPLWT 293 (662)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC---E-EESSCCSSBSSCCCCS
T ss_pred EEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc---e-eecccccccccCcccc
Confidence 89999998 56 333333322 223578999999777777788 45555543321 1 1111111111
Q ss_pred --eEEEEEcCCCCEEEEEecCCcEEEE--EccCCeeEEEeeeCCCCCCCeeE-EECCCCCEEEEEcCCC--cEEEEECCC
Q 019603 206 --VCDIKFSNDGKSMLLTTTNNNIYVL--DAYGGEKRCGFSLEPSPNTNTEA-TFTPDGQYVVSGSGDG--TLHAWNINT 278 (338)
Q Consensus 206 --i~~v~~sp~~~~i~~~~~d~~i~i~--~~~~~~~~~~~~~~~~~~~~~~~-~fs~~~~~l~sgs~Dg--~i~vWd~~~ 278 (338)
+..+.|+|+++.++++.. +.+.+| +..+++. . ++..+...+..+ +++++.-++++++.+. .|++||+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~-~--~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 294 PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL-V--DAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE-E--ECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE-E--EecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 456889999998888887 888888 5555542 2 233333445545 4444333444555554 455567767
Q ss_pred CCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeCCC
Q 019603 279 RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 319 (338)
Q Consensus 279 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~~ 319 (338)
++.......|...+....+.+...+.+.+. ..+..|...|.
T Consensus 370 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~P~ 412 (662)
T 3azo_A 370 GRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYPPH 412 (662)
T ss_dssp CCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEECCC
T ss_pred CceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEECCC
Confidence 766544455554444444544444444442 35666665554
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=6.4e-13 Score=117.86 Aligned_cols=241 Identities=7% Similarity=-0.007 Sum_probs=156.0
Q ss_pred cceeEEEeecCCCEEEEeeCC---Cc--EEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc-----------
Q 019603 28 GKINSLDFHRKDDLLVTASDD---DS--VRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN----------- 91 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D---~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 91 (338)
+.+..+.|+|||++|+.++.+ +. |.+||+.+++........ . +..+.|++++..++......
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457889999999999888764 33 777788887765443333 2 67778888877776553210
Q ss_pred --C--C------CCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCC-------eEEEEECCCcceeee
Q 019603 92 --L--D------STGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDH-------SVRIWDLRVNACQGI 154 (338)
Q Consensus 92 --~--~------~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~-------~I~iWd~~~~~~~~~ 154 (338)
. + .....+.+|++.+++.+..+.. . .+..+.|+|++ .+++++.+. ...||.+..++...
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~- 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK- 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEE-
Confidence 0 0 0125688999988877455544 4 88899999999 888877653 34555444444332
Q ss_pred eeecCccEEEEcCCCCEEEEEEcC--------CeEEEEeCCCCCCCCCeeEEecCCCCceEE-EEEcCCCCEEEEEecCC
Q 019603 155 LRLRGRPTVAFDQQGLVFAVAMEA--------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCD-IKFSNDGKSMLLTTTNN 225 (338)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~-v~~sp~~~~i~~~~~d~ 225 (338)
+... .....++|+|..++..+.+ ..|.+|| ... . ..+..++...+.. +.|+ ++ .+++++.++
T Consensus 213 l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 213 MFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE---V-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp EEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---E-EESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred eccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc---e-EeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence 2222 3334458999887776644 3677777 211 1 1222344556775 8899 88 788888899
Q ss_pred cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcE-EEEECCCCCeEeEeeCCCCc
Q 019603 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL-HAWNINTRNEVACWNGNIGV 291 (338)
Q Consensus 226 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i-~vWd~~~~~~~~~~~~h~~~ 291 (338)
.+++| ..+++.... ..+...+..++|+| ..+++++.++.. ++|.+. ++ ...+..|...
T Consensus 284 ~~~l~-~~~g~~~~~---~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 284 SVNLY-IWDGEIKPI---AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEEEE-EESSSEEEE---ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred cEEEE-EcCCceEEE---ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 99998 765544322 22345678899999 677887777765 788776 44 4556666543
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=1.5e-12 Score=115.06 Aligned_cols=244 Identities=8% Similarity=0.075 Sum_probs=165.2
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
....++.+. ++++.++...+++|.+||..+++.+.++.. ......++++.++ .++.+.. .++.+.+||..++
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g-~lyv~~~-----~~~~v~~iD~~t~ 115 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE-KAYVTQI-----WDYRIFIINPKTY 115 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT-EEEEEEB-----SCSEEEEEETTTT
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC-eEEEEEC-----CCCeEEEEECCCC
Confidence 446778774 455666666789999999999998877642 3445666776554 5554431 2478999999999
Q ss_pred eEEEeecCCc-----cceEEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeeeeeecCc-cEEEEcCCCCEEEEEEcC--
Q 019603 108 RILRYFKGHK-----ERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEA-- 178 (338)
Q Consensus 108 ~~~~~~~~H~-----~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-- 178 (338)
+....+.... .....+++ .+++.+++.. .+++|.+||+++++....+..... ..+.++++|.++++...+
T Consensus 116 ~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~ 194 (328)
T 3dsm_A 116 EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYE 194 (328)
T ss_dssp EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCT
T ss_pred eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCcc
Confidence 8877665332 24556677 3344444443 489999999999887766665433 347889999877766554
Q ss_pred --------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 179 --------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 179 --------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
+.+.++|.++... ...+.. ........++++|+++.++++.. .|.++|..+++..............
T Consensus 195 ~~~~~~~~~~v~~id~~t~~v--~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p 269 (328)
T 3dsm_A 195 GSPYGYEAPSLYRIDAETFTV--EKQFKF-KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKY 269 (328)
T ss_dssp TCSSCBCCCEEEEEETTTTEE--EEEEEC-CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCE
T ss_pred CCccccCCceEEEEECCCCeE--EEEEec-CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCce
Confidence 7899999765321 111111 11235788999999998877654 8999998877642111111112456
Q ss_pred eeEEECC-CCCEEEEE----cCCCcEEEEECCCCCeEeEee
Q 019603 251 TEATFTP-DGQYVVSG----SGDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 251 ~~~~fs~-~~~~l~sg----s~Dg~i~vWd~~~~~~~~~~~ 286 (338)
..++++| ++..+++. ..++.|.+||.. ++.+..+.
T Consensus 270 ~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 270 YGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 7899999 56666666 678999999998 88888775
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=4.5e-12 Score=111.79 Aligned_cols=244 Identities=9% Similarity=0.090 Sum_probs=157.3
Q ss_pred eeeccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
..+.++...+.+++|+|+|++++++..++.|.+||..+++...........+..+++++++..++.... . ......+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~-~-~~~~~~i~ 115 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG-D-FKSTGGIF 115 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT-T-SSSCCEEE
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCC-C-CCCCceEE
Confidence 345567677899999999998888889999999999888765433233445667777665543333211 0 00114788
Q ss_pred EEEccCCeEEEeec--CCccceEEEEEcCCCCEEEEEEC------CCeEEEEECCCcceeeeee-ecCccEEEEcCCCCE
Q 019603 101 YLSMYDNRILRYFK--GHKERVISLCMSPVNDSFMSGSL------DHSVRIWDLRVNACQGILR-LRGRPTVAFDQQGLV 171 (338)
Q Consensus 101 ~~~~~~~~~~~~~~--~H~~~V~~l~~~~~~~~l~Sgs~------D~~I~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~ 171 (338)
+|+..++.....+. .+...+.++.++|+++.+++... .+.|..||...++...... ......++++|+|..
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKV 195 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSE
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCE
Confidence 89887776543332 35567999999999988777654 3566667765544432222 122345789999985
Q ss_pred E-EEEEcCCeEEEEeCCCCCCCCCee---EE---ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 172 F-AVAMEAGAIKLFDSRSYDKGPFDT---FL---VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 172 ~-~~~~~dg~i~i~d~~~~~~~~~~~---~~---~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
+ ++...++.|.+||.+.... .... .. ..+ ...+..+.++++|+.+++...++.|.+|+. .++....+...
T Consensus 196 l~v~~~~~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 196 LWVTETTANRLHRIALEDDGV-TIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSS-SEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred EEEEeCCCCeEEEEEecCCCc-CcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 5 4555678999999753111 1111 00 111 135677999999987777777789999997 45554444433
Q ss_pred C----CCCCCeeEEECCCCCEEEEEcCCC
Q 019603 245 P----SPNTNTEATFTPDGQYVVSGSGDG 269 (338)
Q Consensus 245 ~----~~~~~~~~~fs~~~~~l~sgs~Dg 269 (338)
. +...+..++|+|+++.|+.++.++
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCccccccCcceEEECCCCCEEEEEeCcc
Confidence 2 112578899999987776655543
No 185
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=2.7e-11 Score=104.65 Aligned_cols=276 Identities=8% Similarity=0.046 Sum_probs=181.7
Q ss_pred ccCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEee-cccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 24 SDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYH-KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 24 ~~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
........++.++++|.+.++...++.|.+||.. ++....... ....+..+.+..++. +..+. ...+.+..+
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~-----~~~~~v~~~ 88 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTE-----NGANKIGKL 88 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEE-----TTTTEEEEE
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEe-----cCCCeEEEE
Confidence 3445678999999999988888788999999988 654331111 112344455543333 33221 223568888
Q ss_pred EccCCeEEE-eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec----CccEEEEcCCCCEEEEEEc
Q 019603 103 SMYDNRILR-YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----GRPTVAFDQQGLVFAVAME 177 (338)
Q Consensus 103 ~~~~~~~~~-~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 177 (338)
+.. ++... .+......+.++++.++++.+++...++.|..||.. ++.. .+... ....+.++++|.++++...
T Consensus 89 d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 89 SKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp CTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecC
Confidence 876 54432 223345678999999999888887778999999987 5443 22221 2234778899997776666
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECC
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 257 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 257 (338)
.+.|..+|. .. .+..+........+..+.++|++..+++....+.+.+++. +++... +........+..+++++
T Consensus 166 ~~~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~ 239 (300)
T 2qc5_A 166 NNSIGRITN-TG---KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTPNARPHAITAGK 239 (300)
T ss_dssp TTEEEEECT-TC---CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECS
T ss_pred CCeEEEECC-CC---cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCCCCCceEEEECC
Confidence 788998886 22 1222222233456788999999976666556678999987 444332 33333345678899999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeE-eEeeCCCCceEEEEEcCCCceEEeecceEEEeeeCC
Q 019603 258 DGQYVVSGSGDGTLHAWNINTRNEV-ACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP 318 (338)
Q Consensus 258 ~~~~l~sgs~Dg~i~vWd~~~~~~~-~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~~ 318 (338)
+|...++...++.|..|+. +++.. ..+......+.++++.|++.++++.. . .|+.++|
T Consensus 240 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 240 NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9998888777899999998 44433 22333456789999999999877765 4 5554443
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=1.6e-12 Score=126.80 Aligned_cols=264 Identities=8% Similarity=0.033 Sum_probs=168.1
Q ss_pred cCCCEEEEeeCCC-c--EEEEEc--CCCeeEeEEeec------ccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 37 RKDDLLVTASDDD-S--VRLYDI--VSAKLIKTTYHK------KHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 37 ~~~~~l~s~s~D~-~--i~iWd~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
|+|++++-...++ . -.||-. ..+.....+... ...+...+|++++..++...... ......|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~-G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS-GSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET-TCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC-CCceEEEEEEECC
Confidence 8888766554332 1 245544 334322111111 11345667887777766543211 1111389999999
Q ss_pred CCeEEEeecCCccceEEEEEcCCCCEEEEEECCCe----------------EEEEECCCcceee--eeeec--C--ccEE
Q 019603 106 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHS----------------VRIWDLRVNACQG--ILRLR--G--RPTV 163 (338)
Q Consensus 106 ~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~----------------I~iWd~~~~~~~~--~~~~~--~--~~~~ 163 (338)
+++.......+. .+.+++|+||++.|+.++.|+. |++|++.+++... ++... . ...+
T Consensus 160 tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~ 238 (710)
T 2xdw_A 160 GAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA 238 (710)
T ss_dssp TTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence 998776433332 3677999999999999988876 9999998776322 22221 1 1247
Q ss_pred EEcCCCCEEEEEEc-----CCeEEEEeCCC------CCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC----cEE
Q 019603 164 AFDQQGLVFAVAME-----AGAIKLFDSRS------YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIY 228 (338)
Q Consensus 164 ~~~~~~~~~~~~~~-----dg~i~i~d~~~------~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~----~i~ 228 (338)
.++|+|..++.... +..+.+||+.. .. .....+ ..+...+.. .|+|+|+.+++.+..+ .++
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~l--~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~ 314 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-LKWVKL--IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLI 314 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS-CCCEEE--ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEE
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc-cceEEe--eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEE
Confidence 89999998887664 56899999864 21 112222 233333333 4889999888777643 589
Q ss_pred EEEccCCee--EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc--EEEEECCCCCeEeEeeCCCCceEEEEEcCCCceE
Q 019603 229 VLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 304 (338)
Q Consensus 229 i~~~~~~~~--~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~--i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 304 (338)
+|+..++.. ...+..+.....+..++|++++.++++...|+. |++|++.+++.+..+..+.+.|..+.++|++..+
T Consensus 315 ~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l 394 (710)
T 2xdw_A 315 NIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI 394 (710)
T ss_dssp EEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred EEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEE
Confidence 999876631 122221211124667888888888999999985 6667776788778888888899999999998755
Q ss_pred Ee
Q 019603 305 VA 306 (338)
Q Consensus 305 ~s 306 (338)
+.
T Consensus 395 ~~ 396 (710)
T 2xdw_A 395 FY 396 (710)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=1.2e-12 Score=111.91 Aligned_cols=240 Identities=11% Similarity=0.054 Sum_probs=158.1
Q ss_pred ceeEEEeecCCCEEE-EeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 29 KINSLDFHRKDDLLV-TASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~-s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
...+++++++|++.+ +.+.++.|.+||..++...............+++..++. ++.+. . ++.+..|+..+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~-----~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTD-----F-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEE-----T-TTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEc-----C-CCEEEEEeCCCc
Confidence 678999999999777 557889999999765543221111223445566655444 33322 1 367888887765
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCCCCEEEEEEcCCeEEEEe
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGLVFAVAMEAGAIKLFD 185 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d 185 (338)
............+.+++++++++.+++...++.|.+||..+........ ......++++++|.++++...++.|..||
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 4433222344678999999999988888888999999865543321111 11234588999999777777788999999
Q ss_pred CCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE
Q 019603 186 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg 265 (338)
...... .............+.++|+|..+++...++.|.+|+..+..... . ...+...+..++++++|..+++.
T Consensus 178 ~~~~~~----~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~-~~~~~~~p~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 178 AESNNQ----VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-L-PFTGLNTPLAVAVDSDRTVYVAD 251 (270)
T ss_dssp TTTCCE----EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-C-CCCSCSCEEEEEECTTCCEEEEE
T ss_pred cCCCce----EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-e-ccCCCCCceeEEECCCCCEEEEE
Confidence 654221 11111222557889999999766666668899999976543221 1 11222457889999999999999
Q ss_pred cCCCcEEEEECCCCCe
Q 019603 266 SGDGTLHAWNINTRNE 281 (338)
Q Consensus 266 s~Dg~i~vWd~~~~~~ 281 (338)
..++.|+++++...+.
T Consensus 252 ~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 252 RGNDRVVKLTSLEHHH 267 (270)
T ss_dssp GGGTEEEEECCCGGGS
T ss_pred CCCCEEEEEcCCCccc
Confidence 9999999999986544
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=1.7e-11 Score=116.01 Aligned_cols=272 Identities=13% Similarity=0.114 Sum_probs=185.8
Q ss_pred ecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc--CCeEEEee
Q 019603 36 HRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY--DNRILRYF 113 (338)
Q Consensus 36 s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~ 113 (338)
+|.+.++++...|++|.++|..+++.+..+... .....+.+++++..++.++ .++.+.+||+. +++.+..+
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~------~dg~V~viD~~~~t~~~v~~i 236 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIG------RDGKVNMIDLWMKEPTTVAEI 236 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEE------TTSEEEEEETTSSSCCEEEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEc------CCCeEEEEECCCCCCcEeEEE
Confidence 355567888889999999999999888766433 3455778888887776543 23689999996 77777777
Q ss_pred cCCccceEEEEEc----CCCCEEEEEE-CCCeEEEEECCCcceeeeeeecC----------c---cEEEEcCCCCEE-EE
Q 019603 114 KGHKERVISLCMS----PVNDSFMSGS-LDHSVRIWDLRVNACQGILRLRG----------R---PTVAFDQQGLVF-AV 174 (338)
Q Consensus 114 ~~H~~~V~~l~~~----~~~~~l~Sgs-~D~~I~iWd~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~-~~ 174 (338)
..... ...++|+ |++++++.+. .+++|.++|..+.+.+..+...+ . ..+..++++..+ +.
T Consensus 237 ~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 237 KIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp ECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 65443 5789999 6999876554 66999999998888777665432 1 124456665544 44
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeee-C--CCCCCC
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSL-E--PSPNTN 250 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~-~--~~~~~~ 250 (338)
...+|.|.++|...... +....+ ........+.|+|++++++++. .++.|.++|..+++....... . .|+..-
T Consensus 316 ~~~~g~v~~vd~~~~~~--~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g 392 (567)
T 1qks_A 316 VKETGKILLVDYTDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 392 (567)
T ss_dssp ETTTTEEEEEETTCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred ecCCCeEEEEecCCCcc--ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc
Confidence 45668999999764321 111111 1123355778999999987766 578999999999987665544 2 233222
Q ss_pred eeEEECCCCC-EEEEEc-CCCcEEEEECCC-------CCeEeEeeCCCCceEEEEEcCCCceEEeec---------ceEE
Q 019603 251 TEATFTPDGQ-YVVSGS-GDGTLHAWNINT-------RNEVACWNGNIGVVACLKWAPRRAMFVAAS---------SVLS 312 (338)
Q Consensus 251 ~~~~fs~~~~-~l~sgs-~Dg~i~vWd~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---------~~~~ 312 (338)
.. -++|++. ..+++. .++.|.|+|..+ .+.++.++...+.-..|..+|+++++.... .++.
T Consensus 393 ~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 393 AN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp EE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred ee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence 22 2588754 445553 578999999987 678888876544434588999998777643 2678
Q ss_pred EeeeCCC
Q 019603 313 FWIPNPS 319 (338)
Q Consensus 313 iw~~~~~ 319 (338)
++.....
T Consensus 472 v~d~~~~ 478 (567)
T 1qks_A 472 VFDIKAM 478 (567)
T ss_dssp EEEGGGC
T ss_pred EEECCcc
Confidence 8866543
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=8.9e-13 Score=129.31 Aligned_cols=255 Identities=11% Similarity=0.040 Sum_probs=157.3
Q ss_pred cCCcceeEEEeecCCCEEEEeeCC-----CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCC------
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDD-----DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD------ 93 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 93 (338)
+|...+.+++|||||++|+.++.+ ..|++||+.+++.+..... ...+..++|+++ ..++......-.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-EEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-CceeccEEEECC-CEEEEEEecCcccccccc
Confidence 344578899999999998887654 4699999999987543211 111245678777 666655431100
Q ss_pred --CCCceeEEEEccCCe----EEEeecCCccceEEEEEcCCCCEEEEEECCC-----eEEEEECCCc--ceeeeeeecC-
Q 019603 94 --STGESLRYLSMYDNR----ILRYFKGHKERVISLCMSPVNDSFMSGSLDH-----SVRIWDLRVN--ACQGILRLRG- 159 (338)
Q Consensus 94 --~~~~~i~~~~~~~~~----~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~-----~I~iWd~~~~--~~~~~~~~~~- 159 (338)
.-...+++|++.++. .+.....|...+.++.|+|+|++|+..+.++ .|.+||+.++ ++...+....
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 002458889987654 3333344556789999999999988777554 8999999776 3122333222
Q ss_pred ccEEEEcCCCCEEEEEEcC----CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEcc-C
Q 019603 160 RPTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-G 234 (338)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~-~ 234 (338)
.....++++|..++..+.+ +.|.+||+.... ... ..++..+...+..+.++ ++..+++...++..++|... .
T Consensus 318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~-~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRF-DTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEE-EEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-ccc-EEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 2223345888888777654 458888876432 111 22333444456667776 45556666777776665433 3
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCEEE----EEcCCCcEEEEECCCCCeEeEee
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQYVV----SGSGDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~l~----sgs~Dg~i~vWd~~~~~~~~~~~ 286 (338)
+.....+.+. ....+..++++|+++.|+ +....++|++||+.+++ ...++
T Consensus 395 g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~-~~~l~ 448 (741)
T 1yr2_A 395 GKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK-TTPWE 448 (741)
T ss_dssp SCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE-EEECS
T ss_pred CCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEEe
Confidence 4333333321 234567788999988666 33456889999998876 33443
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=4.4e-12 Score=109.30 Aligned_cols=219 Identities=13% Similarity=0.114 Sum_probs=159.3
Q ss_pred cCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecc-cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecC
Q 019603 37 RKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKK-HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKG 115 (338)
Q Consensus 37 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 115 (338)
..+++|++++.|+.|.+||.++|+.+..+..+. ..+..+.+.+++..++ + .++.++.||. +++.+..+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s-------~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S-------YSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E-------CBSEEEEECT-TSCEEEEEEC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e-------CCCCEEEECC-CCCEEEEEcC
Confidence 347899999999999999999999988776544 2456666666654333 2 1367899998 8888888886
Q ss_pred C-ccceEEEEEcCCCCEEEEEEC-CCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCC
Q 019603 116 H-KERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 193 (338)
Q Consensus 116 H-~~~V~~l~~~~~~~~l~Sgs~-D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 193 (338)
+ ...+.++.+.++++++++.+. ++.|..+|. .++.+..+.... ...
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~-----------------------------~~~-- 121 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET-----------------------------GIE-- 121 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC-----------------------------SCS--
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC-----------------------------CCC--
Confidence 5 357889999999999998887 676766664 444332222110 000
Q ss_pred CeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEE
Q 019603 194 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 273 (338)
Q Consensus 194 ~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~v 273 (338)
+.......+.+.++|+++++...++.|..||.. |+.+..+... .....+.+.++|.++++++.++.|..
T Consensus 122 -------~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~ 190 (276)
T 3no2_A 122 -------RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQ 190 (276)
T ss_dssp -------SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEE
T ss_pred -------cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEE
Confidence 000112223568889988888888999999987 8777766654 23556788999999999998999999
Q ss_pred EECCCCCeEeEeeCCC------CceEEEEEcCCCceEEee
Q 019603 274 WNINTRNEVACWNGNI------GVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 274 Wd~~~~~~~~~~~~h~------~~v~~l~~~p~~~~l~s~ 307 (338)
+|..+++.+-.+..+. ..+.+++..+++..+++.
T Consensus 191 ~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 191 LNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999999988886432 237889999999988887
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=1.9e-11 Score=115.60 Aligned_cols=270 Identities=10% Similarity=0.036 Sum_probs=178.7
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcC--CCeeEeEEeecccCeeeEEEe----ecCCeeEEecCccCCCCCceeE
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIV--SAKLIKTTYHKKHGADCVCFT----HHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
+..+.++.|+|||++|++++.|+.|.+||+. +++.+..+.. ......+.++ +++..++.+.. .++++.
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~-----~~~~v~ 269 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAY-----WPPQYV 269 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEE-----ETTEEE
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEc-----cCCeEE
Confidence 3456789999999999999999999999995 7776665543 2334567777 46666665542 237889
Q ss_pred EEEccCCeEEEeecC----------Ccc-ceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeec---CccEEEE
Q 019603 101 YLSMYDNRILRYFKG----------HKE-RVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAF 165 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~----------H~~-~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~---~~~~~~~ 165 (338)
++|..+.+.++.+.- |.. ++..+..++++. ++++...+|.|.++|....+...+.... ......|
T Consensus 270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~ 349 (567)
T 1qks_A 270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL 349 (567)
T ss_dssp EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence 999999888776542 333 688888888765 5667778899999998765433222221 1124679
Q ss_pred cCCCCEEEEEE-cCCeEEEEeCCCCCCCCCeeEEe-c--CCCCceEEEEEcCCCCEEEEEe--cCCcEEEEEccC-----
Q 019603 166 DQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLV-G--GDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYG----- 234 (338)
Q Consensus 166 ~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~--~~~~~i~~v~~sp~~~~i~~~~--~d~~i~i~~~~~----- 234 (338)
+|+|.+++++. .++.|.++|.++... ...... . .|.+....+ ++|++..+.+.+ .++.|.+++..+
T Consensus 350 ~pdgr~~~va~~~sn~V~ViD~~t~kl--~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~ 426 (567)
T 1qks_A 350 DGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD 426 (567)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcE--EEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence 99999776655 678999999876431 112222 1 122212222 688766555444 357999999876
Q ss_pred --CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC-------CCcEEEEECCCC-----C-eEeEee--------CCCCc
Q 019603 235 --GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-------DGTLHAWNINTR-----N-EVACWN--------GNIGV 291 (338)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~-------Dg~i~vWd~~~~-----~-~~~~~~--------~h~~~ 291 (338)
.+.+......+ .....+.++|++++|..... ..+|.|+|+.+. . ....+. .-...
T Consensus 427 ~~~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (567)
T 1qks_A 427 NAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR 504 (567)
T ss_dssp TBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCE
T ss_pred ccCEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcc
Confidence 33444443332 22344778999999988653 359999999876 2 123332 12357
Q ss_pred eEEEEEcCCCceEEee
Q 019603 292 VACLKWAPRRAMFVAA 307 (338)
Q Consensus 292 v~~l~~~p~~~~l~s~ 307 (338)
+..+.|+|+|..+..+
T Consensus 505 ~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 505 VVQGEFNKDGTEVWFS 520 (567)
T ss_dssp EEEEEECTTSSEEEEE
T ss_pred eEeeeECCCCCEEEEE
Confidence 8899999999865554
No 192
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.54 E-value=5.8e-12 Score=108.71 Aligned_cols=196 Identities=11% Similarity=0.153 Sum_probs=140.6
Q ss_pred cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee--------cCccEEEE-cCCCCEEEEEEc-CCeEEE
Q 019603 114 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL--------RGRPTVAF-DQQGLVFAVAME-AGAIKL 183 (338)
Q Consensus 114 ~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~-dg~i~i 183 (338)
.+|-....+++++++++.+++.+.++.|++||.. ++....+.. .....+++ .+++.++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4577789999999999988998999999999986 444444432 12234677 467777666643 789999
Q ss_pred EeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEE
Q 019603 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 263 (338)
Q Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~ 263 (338)
||.. .. ...............+.++|+++.+++...++.|.+|+.. ++....+....+...+..++++|+|++++
T Consensus 105 ~d~~-g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 105 YNQY-GQ---FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp ECTT-SC---EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred ECCC-Cc---EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 9832 21 1111112234568899999999877776778899999964 44444444333444678899999999888
Q ss_pred EEcCCCcEEEEECCCCCeEeEeeCC--CCceEEEEEcCCCceEEeecc---eEEEeee
Q 019603 264 SGSGDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAASS---VLSFWIP 316 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~~~~~~~~~~h--~~~v~~l~~~p~~~~l~s~s~---~~~iw~~ 316 (338)
+...++.|++||.. ++.+..+..+ ...+.+|+++|+++++++... .+.+|..
T Consensus 180 ~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 180 SDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp EEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred EECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 88889999999984 5666666543 367899999999998888752 6777753
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=4.7e-11 Score=104.14 Aligned_cols=237 Identities=12% Similarity=0.133 Sum_probs=155.4
Q ss_pred cceeEEEeecCCCEEEE-------eeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 28 GKINSLDFHRKDDLLVT-------ASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s-------~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
....+++|+++|.++++ +..++.|.+||..+++.... .. +
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~-------------~------------------- 64 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK-------------P------------------- 64 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-EC-------------C-------------------
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee-------------c-------------------
Confidence 45689999999998888 67789999999876653210 00 0
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCC-CCEEEEEECCCeEEEEECCCcceeee-eee------cCccEEEEcCCCCEE
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGI-LRL------RGRPTVAFDQQGLVF 172 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~~~~~~-~~~------~~~~~~~~~~~~~~~ 172 (338)
...++...+.++.++++ ++.+++ +.+..|.+||.. ++.... ... .....+.++++|.++
T Consensus 65 -----------~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~ 131 (314)
T 1pjx_A 65 -----------EVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW 131 (314)
T ss_dssp -----------EETTEECCEEEEEECSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEE
T ss_pred -----------ccCCCCCCCceEEEecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEE
Confidence 00123456788899998 654444 445589999987 654322 211 112458889999887
Q ss_pred EEEEcC---------------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEc----CCCCEEEEE-ecCCcEEEEEc
Q 019603 173 AVAMEA---------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS----NDGKSMLLT-TTNNNIYVLDA 232 (338)
Q Consensus 173 ~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~s----p~~~~i~~~-~~d~~i~i~~~ 232 (338)
++...+ +.+..+|.. . .+.... ........+.++ |+++.++++ ..++.|++|+.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~~~~~~--~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~ 205 (314)
T 1pjx_A 132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---QMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI 205 (314)
T ss_dssp EEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---CEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred EEecCcccccccccccccCCCCeEEEECCC-C---CEEEec--cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEEC
Confidence 776554 456666643 1 121111 112345778899 999766555 45788999987
Q ss_pred c-CCeeEE--E-eeeCCCC-CCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEe
Q 019603 233 Y-GGEKRC--G-FSLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVA 306 (338)
Q Consensus 233 ~-~~~~~~--~-~~~~~~~-~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s 306 (338)
. .+.... . .....+. .....++++++|.++++...++.|++||..+++.+..+..+...+.+++|+|+++ ++++
T Consensus 206 ~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~ 285 (314)
T 1pjx_A 206 KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence 5 443211 1 1222222 3467799999999998888889999999987777777777778899999999998 4444
Q ss_pred ecc--eEEEeee
Q 019603 307 ASS--VLSFWIP 316 (338)
Q Consensus 307 ~s~--~~~iw~~ 316 (338)
... .+..+.+
T Consensus 286 ~~~~~~l~~~~~ 297 (314)
T 1pjx_A 286 EHENNAVWKFEW 297 (314)
T ss_dssp ETTTTEEEEEEC
T ss_pred eCCCCeEEEEeC
Confidence 444 4555544
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=1e-11 Score=106.00 Aligned_cols=214 Identities=12% Similarity=0.059 Sum_probs=141.1
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee---cCccEEEEcCCCCEE
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---RGRPTVAFDQQGLVF 172 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 172 (338)
++.|..|+..+.........+...+.+++++++++.+++.. ++.|.+||...+... .+.. .....+.++++|.++
T Consensus 45 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~ 122 (270)
T 1rwi_B 45 YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVY 122 (270)
T ss_dssp SCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEE
T ss_pred CCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEE
Confidence 36677777655443322234446788899999988666665 899999998655432 2221 223357889999988
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
++...++.|..|+...... .............+.++|+++.+++...++.|.+|+........ .. .........
T Consensus 123 v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~-~~~~~~p~~ 196 (270)
T 1rwi_B 123 VADRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LP-FTDITAPWG 196 (270)
T ss_dssp EEEGGGTEEEEECTTCCSC----EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CC-CSSCCSEEE
T ss_pred EEECCCCEEEEEECCCcee----EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe-ec-ccCCCCceE
Confidence 8777788999997543211 11111222346778899999866666667899999976654322 11 122245678
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc--eEEEeeeC
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIPN 317 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--~~~iw~~~ 317 (338)
++++++|.++++...++.|++|+............+...+.+++++|+++++++... .|.++..+
T Consensus 197 i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 197 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 999999988888888999999999765443322234467899999999998777654 56666443
No 195
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.52 E-value=3.7e-12 Score=112.55 Aligned_cols=222 Identities=11% Similarity=0.117 Sum_probs=150.6
Q ss_pred CCCcEEEEEcCCCeeEeEEee-cccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe-EEEee---------cC
Q 019603 47 DDDSVRLYDIVSAKLIKTTYH-KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR-ILRYF---------KG 115 (338)
Q Consensus 47 ~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~---------~~ 115 (338)
.+++|.+||..+++.+..... .......+++.+++. ++.+. ...+.|+.|+..... .+..+ .+
T Consensus 67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d-----~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~ 140 (329)
T 3fvz_A 67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTD-----VALHQVFKLDPHSKEGPLLILGRSMQPGSDQN 140 (329)
T ss_dssp CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEE-----TTTTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEE-----CCCCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence 467899999998887655432 223455667765554 33322 234789999876542 34444 35
Q ss_pred CccceEEEEEcC-CCCEEEEEE-CCCeEEEEECCCcceeeeeeecC------------ccEEEEcCC-CCEEEEEEcCCe
Q 019603 116 HKERVISLCMSP-VNDSFMSGS-LDHSVRIWDLRVNACQGILRLRG------------RPTVAFDQQ-GLVFAVAMEAGA 180 (338)
Q Consensus 116 H~~~V~~l~~~~-~~~~l~Sgs-~D~~I~iWd~~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~dg~ 180 (338)
+.....+++++| +++.+++.+ .++.|++|| ..++....+...+ ...++++++ +.++++...++.
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~ 219 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR 219 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE
Confidence 666899999999 788888887 699999999 4566554443211 234889998 778888888999
Q ss_pred EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEE-------ecCCcEEEEEccCCeeEEEeee-CCCCCCCee
Q 019603 181 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-------TTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTE 252 (338)
Q Consensus 181 i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~-------~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~ 252 (338)
|++||..+... ...+....+...+..+.|+| +..+... ..+..+++|+..+++....+.. ..+......
T Consensus 220 I~~~~~~~G~~--~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 220 IQCFKTDTKEF--VREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp EEEEETTTCCE--EEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred EEEEECCCCcE--EEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence 99999763221 11111123445678889999 3333322 2345899999888877665532 234456788
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
++|+|+|..+++...++.|++|++..
T Consensus 297 ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 297 IVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCc
Confidence 99999998889999999999999864
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=3.3e-10 Score=101.84 Aligned_cols=241 Identities=12% Similarity=0.051 Sum_probs=158.2
Q ss_pred EEEeecCCCEEEEee----------CCCcEEEEEcCCCeeEeEEeec-------ccCeeeEEEeecCCeeEEecCccCCC
Q 019603 32 SLDFHRKDDLLVTAS----------DDDSVRLYDIVSAKLIKTTYHK-------KHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 32 ~l~~s~~~~~l~s~s----------~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
.+.|+|||++|+.+. .+++|.+||..+.+.+..+... ......+.+++++..++.+.. .
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~----~ 145 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF----A 145 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEec----C
Confidence 899999999988886 3788999999988776655332 112335677777777776532 1
Q ss_pred CCceeEEEEccCCeEEEe-ecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeeee-----ecCccE---EE
Q 019603 95 TGESLRYLSMYDNRILRY-FKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILR-----LRGRPT---VA 164 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~-~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~-----~~~~~~---~~ 164 (338)
..+.+.++| .+++.+.. +.. .. ++.+.|++ +.+++.+.|+++.++|. +++...... ....+. ..
T Consensus 146 ~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~ 219 (373)
T 2mad_H 146 AGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred CCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence 136799999 98888777 542 22 23455554 45677889999999999 776543222 111111 23
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC--------CCCceEEEEEcCCCCEEEEEec----------CCc
Q 019603 165 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--------DTAEVCDIKFSNDGKSMLLTTT----------NNN 226 (338)
Q Consensus 165 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~i~~v~~sp~~~~i~~~~~----------d~~ 226 (338)
+.+++..++..+..+.+.++|...........+.... .......+.++|+++.+++... .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 4454444444446778888887542111111111000 1122344778999887777543 357
Q ss_pred EEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC-EEEEEc-CCCcEEEEECCCCCeEeEe
Q 019603 227 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGS-GDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 227 i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~-~l~sgs-~Dg~i~vWd~~~~~~~~~~ 285 (338)
|.++|..+++.+..+.... ....++|+|||+ .++++. .++.|.|+|..+++.+..+
T Consensus 300 V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCEEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999999888876664433 467899999999 788877 5899999999999998874
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.51 E-value=2.1e-12 Score=112.12 Aligned_cols=196 Identities=13% Similarity=0.162 Sum_probs=136.3
Q ss_pred ecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 019603 113 FKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSY 189 (338)
Q Consensus 113 ~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 189 (338)
+..+.....++.|+|+++ .++++..++.|..||...+ ...+.... ...+.++++|.++++...++.|.+||.++.
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 445666788999999998 7889999999999999876 33343322 235788999998877777789999997543
Q ss_pred CCCCCeeEEe--cC-CCCceEEEEEcCCCCEEEEEe---c--------------CCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 190 DKGPFDTFLV--GG-DTAEVCDIKFSNDGKSMLLTT---T--------------NNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 190 ~~~~~~~~~~--~~-~~~~i~~v~~sp~~~~i~~~~---~--------------d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
. +..+.. .+ ....+..+.++|+|+.+++.+ . .+.|+.++.. ++... + ......
T Consensus 101 ~---~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~--~~~~~~ 173 (296)
T 3e5z_A 101 E---WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-P--IRDRVK 173 (296)
T ss_dssp C---EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-E--ECCCSS
T ss_pred c---EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-e--ecCCCC
Confidence 2 211111 11 112356789999999777632 1 3466666654 43322 1 223345
Q ss_pred CeeEEECCCCCEEEEEcCCCcEEEEECC-CCCe---EeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 250 NTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNE---VACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~Dg~i~vWd~~-~~~~---~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
...++|+|+|+.|++.+.++.|++|++. +++. ...+..+.+.+.+++++|+++++++....+.+|.+.
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~ 245 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPD 245 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTT
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCC
Confidence 6789999999999888889999999997 4544 334444567778999999999888876667777543
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=3.5e-12 Score=124.17 Aligned_cols=199 Identities=8% Similarity=0.020 Sum_probs=133.1
Q ss_pred CCccceEEEEEcCCCCEEE-----EEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCe-------
Q 019603 115 GHKERVISLCMSPVNDSFM-----SGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGA------- 180 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~~~l~-----Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~------- 180 (338)
+|...+.+++|+|||++|+ +|+.+.+|++||+.+++.......... ..++|+|+|..++.+..|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 5777889999999999988 566678999999998875411122222 45899999999998888765
Q ss_pred ------EEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC----cEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 181 ------IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 181 ------i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~----~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
|++|++.+........+....+...+..+.|+|||+++++++.++ .+++++..+++... +.. +....
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~--~~~~~ 274 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVK--GVGAK 274 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEE--CSSCC
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eec--CCCce
Confidence 999998754321111111122345688899999999998887766 67777654444332 222 22234
Q ss_pred eeEEECCCCCEEEEEc---CCCcEEEEECCCCCe---EeEeeCC-CCceEEEEEcCCCceEEeec--ceEEEeeeCC
Q 019603 251 TEATFTPDGQYVVSGS---GDGTLHAWNINTRNE---VACWNGN-IGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 318 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs---~Dg~i~vWd~~~~~~---~~~~~~h-~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~~ 318 (338)
....+ ++|+++++.. .++.|++||+.+++. ...+..+ ...+..++|+ ++.++++.. ...+||..+.
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 45556 5666555544 368999999987653 3334333 4568889998 667777765 4678887664
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=3.3e-10 Score=101.79 Aligned_cols=275 Identities=8% Similarity=-0.039 Sum_probs=175.9
Q ss_pred EeecCCCEEEEeeC--CC---cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC----CCCCceeEEEEc
Q 019603 34 DFHRKDDLLVTASD--DD---SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL----DSTGESLRYLSM 104 (338)
Q Consensus 34 ~~s~~~~~l~s~s~--D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~ 104 (338)
...|++++++.+.. .. +|.++|..+++.+..+.... .. .+.+++++..++.+....- ...++.+.++|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44578887777653 22 88999999998876654332 22 7788888887776642110 012467999999
Q ss_pred cCCeEEEeecCC-------ccceEEEEEcCCCCEEEEEEC--CCeEEEEECCCcceeee-eeecCccEEEEcCCC-CEEE
Q 019603 105 YDNRILRYFKGH-------KERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGI-LRLRGRPTVAFDQQG-LVFA 173 (338)
Q Consensus 105 ~~~~~~~~~~~H-------~~~V~~l~~~~~~~~l~Sgs~--D~~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 173 (338)
.+.+.+..+.-- ...-..+.|+|++++|+.+.. +++|.++| .+++.... +...+. +.+.+.+ ..++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~--~~~~~~~~~~~~ 181 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC--YHIHPGAPSTFY 181 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce--EEEEeCCCceEE
Confidence 888777665321 123457899999999887774 58899999 98887666 554332 3444544 3556
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeEE----ecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee--EEEeeeCC--
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTFL----VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEP-- 245 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~--~~~~~~~~-- 245 (338)
+.+.||.+..+|. ..... .... ..+.........+.+++..++..+..+.+.++|...+.. ...+....
T Consensus 182 ~~~~dg~~~~vd~-~g~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAA--GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEcCCCCEEEEEC-CCcEE--EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence 6778888888887 43211 0000 001111112345667766666666788999999865432 12222111
Q ss_pred ------CCCCCeeEEECCCCCEEEEEcC----------CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEeec
Q 019603 246 ------SPNTNTEATFTPDGQYVVSGSG----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS 308 (338)
Q Consensus 246 ------~~~~~~~~~fs~~~~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s 308 (338)
.+.....+.|+|+++.|+.+.. ++.|.+.|..+++.+..+.. .+..++++|+||++ .++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence 1122334789999998777543 35799999999999888864 34588999999998 666654
Q ss_pred ---ceEEEeeeC
Q 019603 309 ---SVLSFWIPN 317 (338)
Q Consensus 309 ---~~~~iw~~~ 317 (338)
.++.++...
T Consensus 338 ~~~~~V~ViD~~ 349 (373)
T 2mad_H 338 AGTEVLHIYDAG 349 (373)
T ss_pred CCCCeEEEEECC
Confidence 356666543
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=2e-10 Score=99.84 Aligned_cols=230 Identities=10% Similarity=0.066 Sum_probs=145.6
Q ss_pred eccCCcceeEEEeecCC-CEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 23 FSDFGGKINSLDFHRKD-DLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 23 ~~~h~~~V~~l~~s~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
+..+..--.+..|+|++ .++++...++.|..||..+++.. .
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~------------------------------------- 49 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R------------------------------------- 49 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-------------------------------------
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-------------------------------------
Confidence 33344445678888854 45556666778888887654321 0
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC------ccEEEEcCCCCEEEEE
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG------RPTVAFDQQGLVFAVA 175 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 175 (338)
+ .+...+.+++++++++++++. +..|.+||..+++......... ...+.++++|.++++.
T Consensus 50 -----------~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~ 115 (297)
T 3g4e_A 50 -----------V-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT 115 (297)
T ss_dssp -----------E-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE
T ss_pred -----------E-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec
Confidence 0 012456778899998855543 5789999988776533322211 1236788999866654
Q ss_pred EcC---------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEc--cCCeeE--EEe
Q 019603 176 MEA---------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDA--YGGEKR--CGF 241 (338)
Q Consensus 176 ~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~--~~~~~~--~~~ 241 (338)
... ....+|.+... ...... . ........+.|+|+++.++++ +.++.|++|+. .++... ..+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~d~~--g~~~~~-~-~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 116 MAEETAPAVLERHQGALYSLFPD--HHVKKY-F-DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp EECCSBTTBCCTTCEEEEEECTT--SCEEEE-E-EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred CCcccccccccCCCcEEEEEECC--CCEEEE-e-eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 322 23345543321 111111 1 122345678999999876554 45788999986 445322 111
Q ss_pred -eeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEc-CCCceEEeec
Q 019603 242 -SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-PRRAMFVAAS 308 (338)
Q Consensus 242 -~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~s 308 (338)
...........++++++|.+.++...++.|.+||..+++.+..+..+...+++++|. |++..|..++
T Consensus 192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 192 YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 222222345778999999988888788899999999999999998887889999998 8877555543
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=8.5e-11 Score=105.06 Aligned_cols=270 Identities=14% Similarity=0.095 Sum_probs=173.7
Q ss_pred cccceeeccCCcceeEEEeecCCCEEEEee----------CCCcEEEEEcCCCeeEeEEeecc-------cCeeeEEEee
Q 019603 17 MAMAAIFSDFGGKINSLDFHRKDDLLVTAS----------DDDSVRLYDIVSAKLIKTTYHKK-------HGADCVCFTH 79 (338)
Q Consensus 17 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s----------~D~~i~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~ 79 (338)
++.+..+..-.++ .+.++|||++|+.+. .+++|.+||..+.+.+..+.... .....+.+++
T Consensus 69 ~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 3444444333334 499999999888775 36889999999999887764321 2345578888
Q ss_pred cCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCC-cceeeee---
Q 019603 80 HPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGIL--- 155 (338)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~-~~~~~~~--- 155 (338)
++..++.+.. ..++.+.++|+.+++.+.++.-- +. ...+....+.+++.+.||++-+.++.. ++.....
T Consensus 147 DGk~lyVan~----~~~~~VsVID~~t~~vv~tI~v~-g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 147 DGKTLLFYQF----SPAPAVGVVDLEGKAFKRMLDVP-DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp TSSEEEEEEC----SSSCEEEEEETTTTEEEEEEECC-SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred CCCEEEEEEc----CCCCeEEEEECCCCcEEEEEECC-Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 8877766532 12378999999999988877421 11 123333456788889999999999875 4432111
Q ss_pred -eecCccE---EEEc-CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEe-c------C-CCCceEEEEEcCCCCEEEEEe
Q 019603 156 -RLRGRPT---VAFD-QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-G------G-DTAEVCDIKFSNDGKSMLLTT 222 (338)
Q Consensus 156 -~~~~~~~---~~~~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~------~-~~~~i~~v~~sp~~~~i~~~~ 222 (338)
.....+. ..|. ++|.++ ..+.+|.+.++|.............+ . + .......+.++|+++.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~ 298 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 298 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eccccccccccceeEcCCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence 1111111 2443 566443 35668999999976432111111110 0 0 011223466789988877764
Q ss_pred c----------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC-EEEE-EcCCCcEEEEECCCCCeEeEeeCCCC
Q 019603 223 T----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVS-GSGDGTLHAWNINTRNEVACWNGNIG 290 (338)
Q Consensus 223 ~----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~-~l~s-gs~Dg~i~vWd~~~~~~~~~~~~h~~ 290 (338)
. .+.|.++|..+++.+..+.... ....+.|++|++ +|++ ...++.|.|+|..+++.++.++.- +
T Consensus 299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~ 374 (386)
T 3sjl_D 299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-G 374 (386)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-C
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-C
Confidence 3 2579999999998877665542 467899999997 6666 456999999999999999988643 2
Q ss_pred ceEEEEEcCC
Q 019603 291 VVACLKWAPR 300 (338)
Q Consensus 291 ~v~~l~~~p~ 300 (338)
.-+.|.+++|
T Consensus 375 ~p~~l~~s~d 384 (386)
T 3sjl_D 375 HGPQVITTAD 384 (386)
T ss_dssp SSCCEEEECC
T ss_pred CCceeEECCc
Confidence 3345666666
No 202
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=1.5e-11 Score=109.33 Aligned_cols=270 Identities=10% Similarity=0.088 Sum_probs=161.1
Q ss_pred ccccceeeccCCcceeEEEeecCCCEEEEee--CCCcEEEEEcCCCeeEeEEe-------ecccCeeeEEEeecCCeeEE
Q 019603 16 SMAMAAIFSDFGGKINSLDFHRKDDLLVTAS--DDDSVRLYDIVSAKLIKTTY-------HKKHGADCVCFTHHPSSVIC 86 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 86 (338)
+++.+..+. .....++++|+|+++++.. .++.++||.+.+++.. .+. .+...+..+.+...+ .++.
T Consensus 8 ~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v 82 (343)
T 2qe8_A 8 RLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNG-IVWM 82 (343)
T ss_dssp CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSS-EEEE
T ss_pred eeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCC-cEEE
Confidence 344444443 6789999999999999864 2343677766555533 111 011234445554433 2332
Q ss_pred ecCccCCCCCceeEEEEccCCeEEEeecC------CccceEEEEEcCCCC-EEEEEE---CCCeEEEEECCCcceeeeee
Q 019603 87 STKYNLDSTGESLRYLSMYDNRILRYFKG------HKERVISLCMSPVND-SFMSGS---LDHSVRIWDLRVNACQGILR 156 (338)
Q Consensus 87 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------H~~~V~~l~~~~~~~-~l~Sgs---~D~~I~iWd~~~~~~~~~~~ 156 (338)
.....-...+..+..||+.+++.++.+.- +......+++++++. .+++-+ .++.|.+||+.+++....+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 21100000136789999998887766542 234578899998654 456665 78999999998776544332
Q ss_pred ecCc--c-EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC-cEEEEEc
Q 019603 157 LRGR--P-TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDA 232 (338)
Q Consensus 157 ~~~~--~-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~-~i~i~~~ 232 (338)
.+.. + ...+.++|..+.....++.++.|. .....++|+|+++.++++...+ .++.++.
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CCCcccccccceeECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 1100 0 022333444444444555544332 1256789999999888776655 5666653
Q ss_pred c---CCee-----EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC-CCCceEEEEEcCCCce
Q 019603 233 Y---GGEK-----RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAM 303 (338)
Q Consensus 233 ~---~~~~-----~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ 303 (338)
. .+.. ...+...++......++++++|.++++...++.|.+||..+++....... +.....+++|.|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYL 304 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCE
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcE
Confidence 2 1100 00001111122456799999999999999999999999955654333322 2456899999999988
Q ss_pred EEeec
Q 019603 304 FVAAS 308 (338)
Q Consensus 304 l~s~s 308 (338)
+++.+
T Consensus 305 ~v~~~ 309 (343)
T 2qe8_A 305 YFDCN 309 (343)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88876
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=1.7e-10 Score=103.19 Aligned_cols=278 Identities=8% Similarity=0.003 Sum_probs=177.8
Q ss_pred EEeecCCCEEEEeeC-----CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC----CCCCceeEEEE
Q 019603 33 LDFHRKDDLLVTASD-----DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL----DSTGESLRYLS 103 (338)
Q Consensus 33 l~~s~~~~~l~s~s~-----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~ 103 (338)
....|+++.++.... ++.|.+.|..+++.+..+.....+ . +.+++++..++.+..+.- ...++.+.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445689988777765 689999999999988877654444 3 888888887776542100 01136799999
Q ss_pred ccCCeEEEeecCC-------ccceEEEEEcCCCCEEEEEEC--CCeEEEEECCCcceeeeeeecCccEEEEcC-CCCEEE
Q 019603 104 MYDNRILRYFKGH-------KERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGILRLRGRPTVAFDQ-QGLVFA 173 (338)
Q Consensus 104 ~~~~~~~~~~~~H-------~~~V~~l~~~~~~~~l~Sgs~--D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 173 (338)
..+++.+.++.-- -..-..+.|+|++++++.+.. +++|.++|+.+++....+...+. ..+.| ....++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~ 193 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF 193 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence 9999888776421 113445799999998877663 68999999999998887766543 22223 234555
Q ss_pred EEEcCCeEEEEeCCCCCCCCCeeE--EecCCCCceE-EEEEc-CCCCEEEEEecCCcEEEEEccCCee--EEEeee----
Q 019603 174 VAMEAGAIKLFDSRSYDKGPFDTF--LVGGDTAEVC-DIKFS-NDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSL---- 243 (338)
Q Consensus 174 ~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~i~-~v~~s-p~~~~i~~~~~d~~i~i~~~~~~~~--~~~~~~---- 243 (338)
+.+.||.+.++++...... .... .+......+. ...|. ++|+ ++..+.++.++++|..++.. ...+..
T Consensus 194 ~~~~DG~~~~v~~~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEETTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EECCCCCEEEEECCCCCeE-EEeecceeccccccccccceeEcCCCc-EEEEeCCCEEEEEECCCCcceeecceeccccc
Confidence 6667777777776531110 0000 0001111111 12453 5665 44466689999999865532 222210
Q ss_pred ---C-CCCCCCeeEEECCCCCEEEEEcC----------CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEee-
Q 019603 244 ---E-PSPNTNTEATFTPDGQYVVSGSG----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAA- 307 (338)
Q Consensus 244 ---~-~~~~~~~~~~fs~~~~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~- 307 (338)
. ..+.....++++++++.++.... ...|-+.|..+++.++.+.-- ..+++|+++||++ .|+++
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEE
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEc
Confidence 0 01223345788999988877532 247999999999999988642 3688999999986 55553
Q ss_pred --cceEEEeeeC
Q 019603 308 --SSVLSFWIPN 317 (338)
Q Consensus 308 --s~~~~iw~~~ 317 (338)
+.++.++...
T Consensus 351 ~~~~~VsViD~~ 362 (386)
T 3sjl_D 351 TGDKTLYIHDAE 362 (386)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEEECC
Confidence 3567777543
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=1.2e-10 Score=114.17 Aligned_cols=261 Identities=11% Similarity=0.094 Sum_probs=161.2
Q ss_pred ecCCCEEEEeeCCCc---EEEEEcC-----CCeeEeEEee------cccCeeeEEEeecCCeeEEecCccCCCCCceeEE
Q 019603 36 HRKDDLLVTASDDDS---VRLYDIV-----SAKLIKTTYH------KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 36 s~~~~~l~s~s~D~~---i~iWd~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (338)
+|+|++++-...++. -.||-.. .+.....+.. +...+...+|++++..++...... ......|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG-GSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET-TCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC-CCceEEEEE
Confidence 489998877765554 6677543 3332211111 112355677887777776544311 111147999
Q ss_pred EEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCe--------------EEEEECCCccee--eeeeecC----cc
Q 019603 102 LSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHS--------------VRIWDLRVNACQ--GILRLRG----RP 161 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~--------------I~iWd~~~~~~~--~~~~~~~----~~ 161 (338)
||+.+++.+... .+...+.+++|+|+ +.|+.++.|+. |++|++.++... .++.... ..
T Consensus 194 ~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 194 VGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp EETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred EECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 999998875531 12222357899999 99988887665 899999776532 2222222 23
Q ss_pred EEEEcCCCCEEEEEEcCC-----eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC----CcEEEEEc
Q 019603 162 TVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDA 232 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d----~~i~i~~~ 232 (338)
.+.++|+|..++....++ .+.+||+.......... +. .+....... ++|+|+.+++.+.+ ..+++|+.
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~-~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA-LI-PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE-EE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEEC
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE-ec-CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence 478999999887776544 88899976531010222 22 222233333 35899988888764 34999998
Q ss_pred cCC--eeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC-CCCeEeEeeC-CCCceEEEEEcCCCceEE
Q 019603 233 YGG--EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNG-NIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 233 ~~~--~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~-h~~~v~~l~~~p~~~~l~ 305 (338)
.++ +..... ..+...+..++++ ++.++++...|+..+||.+. +++.+..+.. +.+.|..+.|+|++..++
T Consensus 349 ~~~~~~~~~l~--~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 349 SGSTPRFDTVV--PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp SSSSCEEEEEE--CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred CCCccccEEEe--cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 764 222222 2233345567777 66788889999988888665 4666666764 467899999999987555
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=1e-10 Score=113.81 Aligned_cols=249 Identities=12% Similarity=0.108 Sum_probs=154.0
Q ss_pred cCCcceeEEEeecCCCEEE-----EeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCC------
Q 019603 25 DFGGKINSLDFHRKDDLLV-----TASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLD------ 93 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~-----s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 93 (338)
+|...+.+++|||||++|+ +|+.+..|++||+++++.+...... .....++|+ ++..++........
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD-VKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE-EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC-ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4667788999999999877 3444568999999999865432111 112456788 88777765542110
Q ss_pred -CCCceeEEEEccCCe----EEEeecC-CccceEEEEEcCCCCEEE-EEE---CCCeEEEEECCCcc-eeeeeeecCc-c
Q 019603 94 -STGESLRYLSMYDNR----ILRYFKG-HKERVISLCMSPVNDSFM-SGS---LDHSVRIWDLRVNA-CQGILRLRGR-P 161 (338)
Q Consensus 94 -~~~~~i~~~~~~~~~----~~~~~~~-H~~~V~~l~~~~~~~~l~-Sgs---~D~~I~iWd~~~~~-~~~~~~~~~~-~ 161 (338)
.....+++|++.++. ++..... |...+.++.|+|++++|+ +.+ .+..|.+||+..+. ....+..+.. .
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 112458889887653 3444444 666788999999999764 333 23589999997663 2223332222 2
Q ss_pred EEEEcCCCCEEEEEEc-C---CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC---cEEEEEccC
Q 019603 162 TVAFDQQGLVFAVAME-A---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYG 234 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~---~i~i~~~~~ 234 (338)
...++++|..++..+. + +.|..+|+.......... ++ .+...+. .|+|+++++++...++ .+++|+..+
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~-l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD-LI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE-EE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE-Ee-cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 2236666665554443 2 578888876543211222 22 3333343 8899999888777655 688888765
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC----CcEEEEECCCCCe
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----GTLHAWNINTRNE 281 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D----g~i~vWd~~~~~~ 281 (338)
+.. ....+. ....+..+.++++++.|+....+ ++|+.||+.+++.
T Consensus 360 ~~~-~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 360 KRV-REVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CEE-EEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred Cee-EEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 432 222222 22345566778888766655444 7899999987754
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.9e-11 Score=109.54 Aligned_cols=171 Identities=13% Similarity=0.077 Sum_probs=127.1
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCcc---------e--eeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 019603 119 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---------C--QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSR 187 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 187 (338)
.+..+++++....+++|+.|+ +++|++.... . ...+.......++| ++..++++ .++.|++||++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 688899999999999999985 6679865332 1 12233334444677 88888888 88999999988
Q ss_pred CCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 188 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
+..... . ...+...+..+.+.+. .+++++.||.+.+|++..+.... ....+++++|||+| ++.|..
T Consensus 115 sl~~~~--~--~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 115 ELSEFR--T--VTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp STTCEE--E--EEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE--EEEEET
T ss_pred hhhccC--c--cceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc--eEEEEc
Confidence 654321 1 1233455777777654 38889999999999998775532 12368999999999 677899
Q ss_pred CCcEEEEECCCCCe--EeEe------e---CCCCceEEEEEcCCCceEEee
Q 019603 268 DGTLHAWNINTRNE--VACW------N---GNIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 268 Dg~i~vWd~~~~~~--~~~~------~---~h~~~v~~l~~~p~~~~l~s~ 307 (338)
||.+++|+...++. .+.+ . +|...|.+|.|.+++.++++-
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999999877664 4555 3 478899999999999999873
No 207
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.39 E-value=1.7e-10 Score=99.32 Aligned_cols=171 Identities=13% Similarity=0.089 Sum_probs=129.6
Q ss_pred CCEEEEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCc
Q 019603 129 NDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 205 (338)
Q Consensus 129 ~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 205 (338)
++.|++++.|+.|.+||.++++.+..+..+. ...+.+.|+|.+++ +.++.+..||. +.+ .+..+. .+....
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~--~~W~~~-~~~~~~ 78 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR--ELWNIA-APAGCE 78 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC--EEEEEE-CCTTCE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC--EEEEEc-CCCCcc
Confidence 5789999999999999998999887777653 45678999999888 45778999986 322 122222 122346
Q ss_pred eEEEEEcCCCCEEEEEec-CCcEEEEEccCCeeEEEeeeCC----CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 206 VCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEP----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 206 i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~~~~~~~~~----~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
+..+.+.|+|+.+++.+. ++.+..++. +|+.+..+.... +......+++.++|.+|++...++.|++||.. ++
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 788899999999888877 777888875 676665555432 11234457889999999999999999999998 99
Q ss_pred eEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 281 EVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 281 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.+-.+..+ +...++.+.|++..+++++
T Consensus 157 ~~w~~~~~-~~~~~~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 157 LLNSVKLS-GTPFSSAFLDNGDCLVACG 183 (276)
T ss_dssp EEEEEECS-SCCCEEEECTTSCEEEECB
T ss_pred EEEEEECC-CCccceeEcCCCCEEEEeC
Confidence 98888765 4567788899999888775
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=1.2e-09 Score=99.43 Aligned_cols=235 Identities=9% Similarity=0.109 Sum_probs=156.3
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR 108 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 108 (338)
....|+|+++|+++++...++.|+.||+.++........ ..... +++.++...++.+.. .....+..++..++.
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~----~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGW----EGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBS----STTCEEEEEEGGGTT
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEec----CCCceEEEEEcCCCc
Confidence 567899999999888888889999999998776543332 22223 667666655554432 111278888877654
Q ss_pred EEEee----cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeee----e--ecCcc---EEEEcCC-CCEEEE
Q 019603 109 ILRYF----KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----R--LRGRP---TVAFDQQ-GLVFAV 174 (338)
Q Consensus 109 ~~~~~----~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~----~--~~~~~---~~~~~~~-~~~~~~ 174 (338)
....+ ..+...+.+++++|++..|+.+..++.|+.||+..+... .+ . ..+.. -++++|+ +.++++
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 43333 225567888999996555555777899999999776532 22 1 11112 6889994 667777
Q ss_pred EEcCCeEEEEeCCCCCCCCCeeEEecCC--------------CCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEE
Q 019603 175 AMEAGAIKLFDSRSYDKGPFDTFLVGGD--------------TAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRC 239 (338)
Q Consensus 175 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------------~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~ 239 (338)
....+.|+.|+.... ... ..... -.....++++|+|+++++-. .++.|+.|+..++....
T Consensus 285 d~~~~~I~~~~~~g~----~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE----CEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp ETTTTEEEEECTTCC----EEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred eCCCCEEEEEecCCC----EEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 777889999985421 111 11110 13467899999999777776 78899999976776432
Q ss_pred EeeeCC-------------CCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 240 GFSLEP-------------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 240 ~~~~~~-------------~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
+.... .......++++++|.++++-..++.|+.+.+
T Consensus 360 -~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 360 -VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 22220 0134678999999988888888888888765
No 209
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.37 E-value=5.1e-09 Score=90.15 Aligned_cols=237 Identities=8% Similarity=0.062 Sum_probs=154.7
Q ss_pred cCCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEee--cccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 25 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYH--KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
.+...+.+++++++|.+.++...++.|..||.. ++. ..+.. ....+..+.+..++. +..+. ..++.+..+
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~-----~~~~~i~~~ 125 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGD-IWFTE-----MNGNRIGRI 125 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSC-EEEEE-----TTTTEEEEE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCC-EEEEe-----cCCceEEEE
Confidence 345778999999999988888778999999986 433 22221 223344455544332 33222 123678888
Q ss_pred EccCCeEEEe-ecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeee-eee--cCccEEEEcCCCCEEEEEEcC
Q 019603 103 SMYDNRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI-LRL--RGRPTVAFDQQGLVFAVAMEA 178 (338)
Q Consensus 103 ~~~~~~~~~~-~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~d 178 (338)
+. +++.... ...+...+.++.++++++.+++...++.|..||. +++.... ... .....+.++++|.++++...+
T Consensus 126 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 203 (299)
T 2z2n_A 126 TD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIG 203 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred CC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCC
Confidence 87 5544332 3345567899999999988887777899999998 6554322 111 112347889999877777678
Q ss_pred CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 179 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
+.+..||. ... +..+........+..+.++|+|+.+++...++.|..|+. .+. ...+........+..+++ ++
T Consensus 204 ~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~ 276 (299)
T 2z2n_A 204 NKIGRITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DG 276 (299)
T ss_dssp TEEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CS
T ss_pred ceEEEECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cC
Confidence 89999987 322 222222233456889999999986555556789999997 454 334443333456788899 88
Q ss_pred CCEEEEEcCCCcEEEEECCCC
Q 019603 259 GQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 259 ~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
|.+.++.+ .+.|..++..++
T Consensus 277 g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 277 ETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SCEEEEET-TTEEEEEEEC--
T ss_pred CCEEEEec-CCcEEEEEcCcc
Confidence 88887766 566777777654
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.37 E-value=3.7e-10 Score=102.56 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=162.0
Q ss_pred EEEeecCCCEEEEee----------CCCcEEEEEcCCCeeEeEEeec-------ccCeeeEEEeecCCeeEEecCccCCC
Q 019603 32 SLDFHRKDDLLVTAS----------DDDSVRLYDIVSAKLIKTTYHK-------KHGADCVCFTHHPSSVICSTKYNLDS 94 (338)
Q Consensus 32 ~l~~s~~~~~l~s~s----------~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
.+.++|||++|+.+. .++.|.++|..+++.+..+... ......+.+++++..++.+.. .
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~----~ 197 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF----S 197 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC----S
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec----C
Confidence 899999999888876 4779999999999988776432 122345678888777776532 1
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceee----eeeecCcc---EEEEc
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQG----ILRLRGRP---TVAFD 166 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~----~~~~~~~~---~~~~~ 166 (338)
.++++.++|+.+++.+..+.-- +. ....|++ +.+++.+.||++-+.++..++... .+.....+ ...+.
T Consensus 198 ~~~~VsVID~~t~kvv~~I~v~-g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 198 PAPAVGVVDLEGKTFDRMLDVP-DC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS 273 (426)
T ss_dssp SSCEEEEEETTTTEEEEEEECC-SE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC
T ss_pred CCCeEEEEECCCCeEEEEEEcC-Cc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec
Confidence 2478999999999888776531 11 2233433 566777788888888875544331 12221111 24568
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC-C-------CCceEEEEEcCCCCEEEEEec----------CCcEE
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG-D-------TAEVCDIKFSNDGKSMLLTTT----------NNNIY 228 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~-------~~~i~~v~~sp~~~~i~~~~~----------d~~i~ 228 (338)
+++..++.....+.+.++|...........+.... . ......+.++|+++.+++... .+.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 88887776677888999887532110000111000 0 011112578999887766542 35799
Q ss_pred EEEccCCeeEEEeeeCCCCCCCeeEEECCCCC-EEEEEc-CCCcEEEEECCCCCeEeEe
Q 019603 229 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGS-GDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 229 i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~-~l~sgs-~Dg~i~vWd~~~~~~~~~~ 285 (338)
++|..+.+.+..+.... ....+.|+|||+ ++++.. .++.|.|+|..+++.++.+
T Consensus 354 VID~~T~kvv~~I~vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 354 VLNAETGERINKIELGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEECCCCeEEEEEECCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999998877665433 356799999999 888877 5999999999999999887
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.36 E-value=2.9e-10 Score=103.29 Aligned_cols=276 Identities=9% Similarity=0.026 Sum_probs=175.2
Q ss_pred cCCCEEEEeeC-C----CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC----CCCCceeEEEEccCC
Q 019603 37 RKDDLLVTASD-D----DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL----DSTGESLRYLSMYDN 107 (338)
Q Consensus 37 ~~~~~l~s~s~-D----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~ 107 (338)
++++.++.+.. + ++|.+.|..+++.+..+.....+ -+.+++++..++.+..+.- ...++.+.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 46665555544 3 69999999999998877655444 6788888887776542100 002367999999999
Q ss_pred eEEEeec-C------CccceEEEEEcCCCCEEEEEEC--CCeEEEEECCCcceeeeeeecCccEEEEcCCC-CEEEEEEc
Q 019603 108 RILRYFK-G------HKERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGILRLRGRPTVAFDQQG-LVFAVAME 177 (338)
Q Consensus 108 ~~~~~~~-~------H~~~V~~l~~~~~~~~l~Sgs~--D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 177 (338)
+.+..+. + +-..-..+.|+|++++++.+.. +++|.+.|+.+++....+...+. ....|++ ..+++.+.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEET
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcC
Confidence 8887764 1 1123446799999999887764 68999999999988777776443 2223322 34555556
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCc-eEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEE--EeeeCC--------C
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAE-VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC--GFSLEP--------S 246 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~-i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~--~~~~~~--------~ 246 (338)
||.+.+.+.............+...... ...+.|.|+++.++..+..+.+.++|...+.... .+.... .
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 6666666652211100000000000111 1124678999888888888999999986543221 111110 0
Q ss_pred CCCCeeEEECCCCCEEEEEcC----------CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEeec---ceEE
Q 019603 247 PNTNTEATFTPDGQYVVSGSG----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLS 312 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s---~~~~ 312 (338)
+.....++|+|+++.++.... ++.|.|.|..+.+.+..+..- ...++|+|+||++ .++++. .++.
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 111223789999987776532 357999999999999988642 2578999999998 666653 4677
Q ss_pred EeeeC
Q 019603 313 FWIPN 317 (338)
Q Consensus 313 iw~~~ 317 (338)
++...
T Consensus 397 VID~~ 401 (426)
T 3c75_H 397 IYDAA 401 (426)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 77644
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=4.2e-09 Score=91.76 Aligned_cols=228 Identities=8% Similarity=0.048 Sum_probs=144.7
Q ss_pred cceeeccCCcceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCc
Q 019603 19 MAAIFSDFGGKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGE 97 (338)
Q Consensus 19 ~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
.+..+........+..|+|+|+ ++++...++.|..|+. ++.. ..
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~--------------------------------- 80 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DV--------------------------------- 80 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EE---------------------------------
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EE---------------------------------
Confidence 3444555566678899999988 6677777888888876 3321 10
Q ss_pred eeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee-c-----CccEEEEcCCCCE
Q 019603 98 SLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-R-----GRPTVAFDQQGLV 171 (338)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~-~-----~~~~~~~~~~~~~ 171 (338)
+..+...+.++.++++++.+++...++.|.+||.. ++....... . ....+.++++|.+
T Consensus 81 ---------------~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l 144 (305)
T 3dr2_A 81 ---------------LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAI 144 (305)
T ss_dssp ---------------EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCE
T ss_pred ---------------EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCE
Confidence 11123446778899999876666666889999975 543222111 1 1234788999998
Q ss_pred EEE----EEc-------------CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC------CcEE
Q 019603 172 FAV----AME-------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIY 228 (338)
Q Consensus 172 ~~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d------~~i~ 228 (338)
+++ +.. .+.|..+|..... +.... .......++|+|+++.++++... +.|+
T Consensus 145 ~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~---~~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~ 218 (305)
T 3dr2_A 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP---LQRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT 218 (305)
T ss_dssp EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---CEEEE---EESSEEEEEECTTSSEEEEEECCC---CCCEEE
T ss_pred EEeCcCCCccccccccccccccCCCeEEEEcCCCCc---EEEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEE
Confidence 775 221 2456666654322 21211 22346778999999987777665 6899
Q ss_pred EEEccCCeeE--EEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEe
Q 019603 229 VLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 229 i~~~~~~~~~--~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s 306 (338)
+|+...+... ..+. .........++++++|.+.++ ..+| |++|+. +++.+..+..+. .+.+++|+|++..|..
T Consensus 219 ~~~~~~~~l~~~~~~~-~~~~~~pdgi~~d~~G~lwv~-~~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~i 293 (305)
T 3dr2_A 219 AFAWRDGALHDRRHFA-SVPDGLPDGFCVDRGGWLWSS-SGTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFI 293 (305)
T ss_dssp EEEEETTEEEEEEEEE-CCSSSCCCSEEECTTSCEEEC-CSSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEE
T ss_pred EEEecCCCccCCeEEE-ECCCCCCCeEEECCCCCEEEe-cCCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEE
Confidence 9998655311 1111 112234567899999995554 4454 999998 567777776655 5889999999875555
Q ss_pred ec
Q 019603 307 AS 308 (338)
Q Consensus 307 ~s 308 (338)
++
T Consensus 294 t~ 295 (305)
T 3dr2_A 294 TG 295 (305)
T ss_dssp EE
T ss_pred Ec
Confidence 44
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.35 E-value=4.9e-09 Score=92.37 Aligned_cols=180 Identities=14% Similarity=0.158 Sum_probs=115.5
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeec------CccEEEEcCCCCEEEEEEc------CCeEEEEe
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR------GRPTVAFDQQGLVFAVAME------AGAIKLFD 185 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------dg~i~i~d 185 (338)
..+.++.++++++++++. . ..|.+||..+++........ ....+.++++|.++++... .+.+..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 457778888888776654 3 45899998777653322211 1124678999987665432 23444444
Q ss_pred CCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEcc--CC-eeE--EEe-eeCCCCCCCeeEEECCC
Q 019603 186 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAY--GG-EKR--CGF-SLEPSPNTNTEATFTPD 258 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~--~~-~~~--~~~-~~~~~~~~~~~~~fs~~ 258 (338)
. .....+. ........+.|+|+++.++++. .++.|++|+.. ++ ... ..+ ...........++++++
T Consensus 168 --~---g~~~~~~--~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 168 --K---GKVTKLF--ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE 240 (326)
T ss_dssp --T---TEEEEEE--EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred --C---CcEEEee--CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence 2 1111111 1123456789999998776554 46789999975 45 311 112 22222234567899999
Q ss_pred CCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEc-CCCceEEee
Q 019603 259 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-PRRAMFVAA 307 (338)
Q Consensus 259 ~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~ 307 (338)
|.+.++...++.|.+||. +++.+..+..+...+.+++|. |++..|..+
T Consensus 241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp SCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 998887777789999998 577777887777789999998 887755444
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=3.6e-09 Score=96.27 Aligned_cols=212 Identities=11% Similarity=0.072 Sum_probs=137.6
Q ss_pred CCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCC--eEEEEECCCcceeeee------eecCccEEEEc
Q 019603 95 TGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGIL------RLRGRPTVAFD 166 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~--~I~iWd~~~~~~~~~~------~~~~~~~~~~~ 166 (338)
..+.|+.|+..++........... .. ++|+++++.|+.+..++ .|.+||...+.....+ .......++++
T Consensus 150 ~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~ 227 (409)
T 3hrp_A 150 DDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALD 227 (409)
T ss_dssp TTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEEC
T ss_pred CCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEe
Confidence 347899999988876655544332 33 89999999988888866 7888987655433333 12223457889
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEE---ecCCCCce--EEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEE
Q 019603 167 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL---VGGDTAEV--CDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCG 240 (338)
Q Consensus 167 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~i--~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~ 240 (338)
|++..+.++..++.|+.||..... ...+. ..+....- ..+.|+|++. .+++-..++.|+.|+.... . ..
T Consensus 228 p~~g~lyv~d~~~~I~~~d~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-~~ 302 (409)
T 3hrp_A 228 ETEEWLYFVDSNKNFGRFNVKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-EW 302 (409)
T ss_dssp TTSSEEEEECTTCEEEEEETTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-EE
T ss_pred CCCCeEEEEECCCcEEEEECCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-EE
Confidence 944444446678899999976432 11110 11121222 2889999644 4445555778999986533 2 22
Q ss_pred eeeCC-------------CCCCCeeEEECCCCCEEEEEc-CCCcEEEEECCCCCeEeEeeCC---------------CCc
Q 019603 241 FSLEP-------------SPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGN---------------IGV 291 (338)
Q Consensus 241 ~~~~~-------------~~~~~~~~~fs~~~~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~h---------------~~~ 291 (338)
+.... .......++|+|+|.++++-. .++.|+.|++.+++ +..+.++ -..
T Consensus 303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~ 381 (409)
T 3hrp_A 303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNY 381 (409)
T ss_dssp EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSS
T ss_pred EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCC
Confidence 22221 013467899999999888888 89999999987765 4455444 245
Q ss_pred eEEEEEcCCCceEEeecceEEEe
Q 019603 292 VACLKWAPRRAMFVAASSVLSFW 314 (338)
Q Consensus 292 v~~l~~~p~~~~l~s~s~~~~iw 314 (338)
..+|+++|++.++++-...-+|+
T Consensus 382 P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 382 PYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEEEEECSSSEEEEEESTTCEEE
T ss_pred ceEEEEcCCCCEEEEECCCCeEE
Confidence 88999999988888766544444
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.26 E-value=4.2e-08 Score=84.40 Aligned_cols=209 Identities=11% Similarity=0.079 Sum_probs=142.9
Q ss_pred ceeEEEEccCCeEEE-eecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee----cCccEEEEcCCCCE
Q 019603 97 ESLRYLSMYDNRILR-YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL----RGRPTVAFDQQGLV 171 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~-~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~----~~~~~~~~~~~~~~ 171 (338)
+.+..++.. ++... .+..+...+.++.++++++.+++...++.|..||.. ++.. .+.. .....+.++++|.+
T Consensus 41 ~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l 117 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDI 117 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCE
T ss_pred CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCE
Confidence 667777776 44333 223445778999999999888877778999999987 5542 2222 12234778889988
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
+++...++.+..+|.. . ....+...........+.+.|+++.+++...++.|..++. +++... +........+.
T Consensus 118 ~v~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~ 191 (300)
T 2qc5_A 118 WFTQLNGDRIGKLTAD-G---TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPV 191 (300)
T ss_dssp EEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEE
T ss_pred EEEccCCCeEEEECCC-C---CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcc
Confidence 8777767889888864 2 1222222223456888999999996665555788999987 554432 33333334678
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCCCCeEeE-eeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 252 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
.++++++|.+.++....+.|.+|+. +++.... +..+...+.+|++.|+++++++.. ..+..+.
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 8999999998888777889999998 4444332 334557789999999999777763 3455553
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=2.7e-10 Score=101.71 Aligned_cols=266 Identities=11% Similarity=-0.006 Sum_probs=162.7
Q ss_pred hccccceeeccCCcceeEEEeecCCCEEEEee----------CCCcEEEEEcCCCeeEeEEeec-------ccCeeeEEE
Q 019603 15 RSMAMAAIFSDFGGKINSLDFHRKDDLLVTAS----------DDDSVRLYDIVSAKLIKTTYHK-------KHGADCVCF 77 (338)
Q Consensus 15 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s----------~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~ 77 (338)
..++.+.++.--..+ ++.|+||+++++.+. .+++|.+||+.+++.+..+... ......+.+
T Consensus 54 ~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~ 131 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence 344555555433445 799999999888886 4789999999999988877543 123456778
Q ss_pred eecCCeeEEecCccCCCCCceeEE--EEccCCeEEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCC-----c
Q 019603 78 THHPSSVICSTKYNLDSTGESLRY--LSMYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRV-----N 149 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~-----~ 149 (338)
++++..++.+.. ..+..+.+ +|..+ +..+.- .+. ..+.|++ +.+++.+.|+++.+.|+.. +
T Consensus 132 SpDGk~lyVan~----~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 132 CASSACLLFFLF----GSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp CTTSSCEEEEEC----SSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred cCCCCEEEEEcc----CCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 888777765532 11245666 66655 233221 010 1123443 3556777888888888876 3
Q ss_pred ceee----eeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEec-------C-CCCceEEEEEcCCCCE
Q 019603 150 ACQG----ILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-------G-DTAEVCDIKFSNDGKS 217 (338)
Q Consensus 150 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~-~~~~i~~v~~sp~~~~ 217 (338)
+... .+.....+. . .+++..++..+. +.+.+.|.............+. + .......+.++|+++.
T Consensus 201 ~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp ECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred eEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 3221 122222333 3 555555555555 8888888753211000000000 0 0011112579999998
Q ss_pred EEEEec---------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCC-EEEEEc-CCCcEEEEECCCCCeEeEee
Q 019603 218 MLLTTT---------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGS-GDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 218 i~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~-~l~sgs-~Dg~i~vWd~~~~~~~~~~~ 286 (338)
++++.. .+.+.++|..+++.+..+.... ....++|+|||+ .+++.. .++.|.|+|+.+++.+..++
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 877643 2467799999888776554433 367799999998 456666 59999999999999999987
Q ss_pred CCCCceEEEEEcCC
Q 019603 287 GNIGVVACLKWAPR 300 (338)
Q Consensus 287 ~h~~~v~~l~~~p~ 300 (338)
... .-++|++.+.
T Consensus 355 vg~-~P~~i~~~~~ 367 (368)
T 1mda_H 355 LDK-GPESLSVQNE 367 (368)
T ss_dssp CCS-CCCEEECCCC
T ss_pred CCC-CCCEEEeecC
Confidence 553 3456766553
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=5.7e-10 Score=100.01 Aligned_cols=174 Identities=13% Similarity=0.145 Sum_probs=119.1
Q ss_pred CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe---------EEE-eecCCccceEEEEEcCCCCEEEEEECCCe
Q 019603 71 GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR---------ILR-YFKGHKERVISLCMSPVNDSFMSGSLDHS 140 (338)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~-~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~ 140 (338)
.+..++++.....++.++ ...+.+|++.+.+ ... ....+.+ |+.++| ++++|+.+ .++.
T Consensus 39 ~~nlLais~~~gll~a~~-------~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAAS-------GSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEE-------TTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEEcCCCCEEEEeC-------CCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence 456667766655544432 2567778865432 111 1224667 999999 88999988 8899
Q ss_pred EEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEE
Q 019603 141 VRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 220 (338)
Q Consensus 141 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~ 220 (338)
|++||+++......+.........+.+....++++..||.+.+||++.... .. ....|++++|||+| +++
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~---~~-----~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST---KQ-----LAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE---EE-----EEESEEEEEECSSE--EEE
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc---cc-----ccCCceEEEEcCCc--eEE
Confidence 999999776544444444433333333333488899999999999875432 11 23469999999999 678
Q ss_pred EecCCcEEEEEccCCee--EEEeee----C---CCCCCCeeEEECCCCCEEEEE
Q 019603 221 TTTNNNIYVLDAYGGEK--RCGFSL----E---PSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 221 ~~~d~~i~i~~~~~~~~--~~~~~~----~---~~~~~~~~~~fs~~~~~l~sg 265 (338)
+..|+.+++|+..+++. ...+.. . .+...+.++.|.+++++|++-
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999999998877764 333311 1 356789999999999999883
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.20 E-value=3e-08 Score=96.17 Aligned_cols=264 Identities=12% Similarity=0.064 Sum_probs=166.4
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeec-cc----CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEee
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHK-KH----GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYF 113 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 113 (338)
+..|+.++.|+.|..+|..+|+.+...... .. .+...-. .....++......-...++.+..||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~-v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPR-VVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCE-EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcE-EECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 567888999999999999999987665432 10 1110000 11233333221100112478999999999987765
Q ss_pred cCC-------------------------------ccceEEEEEcCCCCEEEEEECCCe-------------------EEE
Q 019603 114 KGH-------------------------------KERVISLCMSPVNDSFMSGSLDHS-------------------VRI 143 (338)
Q Consensus 114 ~~H-------------------------------~~~V~~l~~~~~~~~l~Sgs~D~~-------------------I~i 143 (338)
..- ...-..++++|+...++.++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 421 001124678888888888887764 999
Q ss_pred EECCCcceeeeeeecCc---------cEE--EEcCCCC---EEEEEEcCCeEEEEeCCCCCCC------C-CeeEEec--
Q 019603 144 WDLRVNACQGILRLRGR---------PTV--AFDQQGL---VFAVAMEAGAIKLFDSRSYDKG------P-FDTFLVG-- 200 (338)
Q Consensus 144 Wd~~~~~~~~~~~~~~~---------~~~--~~~~~~~---~~~~~~~dg~i~i~d~~~~~~~------~-~~~~~~~-- 200 (338)
||.++++....++.... +.+ .+..+|. .++.+..+|.+.++|.++.+.. + .....+.
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 99999988766654211 111 1223454 6778889999999997765321 0 0000000
Q ss_pred ---------------CCCC-----------ceEEEEEcCCCCEEEEEec-------------------------------
Q 019603 201 ---------------GDTA-----------EVCDIKFSNDGKSMLLTTT------------------------------- 223 (338)
Q Consensus 201 ---------------~~~~-----------~i~~v~~sp~~~~i~~~~~------------------------------- 223 (338)
.... .-..++|+|+...+++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 0000 0112678888877766532
Q ss_pred --------------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCC
Q 019603 224 --------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 289 (338)
Q Consensus 224 --------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~ 289 (338)
++.++.||+.+++....+.... ......+...+.+++.|+.||.+++||.++++.+-.++...
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 2668899999998776655432 22334666788899999999999999999999998887554
Q ss_pred Cce-EEEEEcCCCceEEe
Q 019603 290 GVV-ACLKWAPRRAMFVA 306 (338)
Q Consensus 290 ~~v-~~l~~~p~~~~l~s 306 (338)
+.+ .-+.|..+|+++++
T Consensus 517 ~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 517 GVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCceEEEECCEEEEE
Confidence 333 44888888875544
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=7.4e-08 Score=93.23 Aligned_cols=263 Identities=12% Similarity=0.026 Sum_probs=168.7
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCeeEeEEeec-c----cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEe
Q 019603 38 KDDLLVTASDDDSVRLYDIVSAKLIKTTYHK-K----HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRY 112 (338)
Q Consensus 38 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 112 (338)
.+..|+.++.|+.|..+|..+|+.+...... . ..+...-. .....++......-...++.++.+|..+++.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~-v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR-VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE-EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE-EECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3567888899999999999999988765433 1 01111000 1233444332110011247899999999998876
Q ss_pred ecCCccc--------------------------------eEEEEEcCCCCEEEEEECCC-------------------eE
Q 019603 113 FKGHKER--------------------------------VISLCMSPVNDSFMSGSLDH-------------------SV 141 (338)
Q Consensus 113 ~~~H~~~--------------------------------V~~l~~~~~~~~l~Sgs~D~-------------------~I 141 (338)
+...... ...++++|++..++.++.++ +|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 6432211 12467888888888777664 59
Q ss_pred EEEECCCcceeeeeeecCc----------cE-EEEcCCC---CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC------
Q 019603 142 RIWDLRVNACQGILRLRGR----------PT-VAFDQQG---LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG------ 201 (338)
Q Consensus 142 ~iWd~~~~~~~~~~~~~~~----------~~-~~~~~~~---~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------ 201 (338)
..+|.++++....++.... +. +....+| ..++.+..+|.+.++|.++.+. +..+....
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWASG 363 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE--eccccccccCcccc
Confidence 9999999988766654211 22 2233466 5788888999999999776432 11111000
Q ss_pred --CCC-ce------------------------EEEEEcCCCCEEEEEecC------------------------------
Q 019603 202 --DTA-EV------------------------CDIKFSNDGKSMLLTTTN------------------------------ 224 (338)
Q Consensus 202 --~~~-~i------------------------~~v~~sp~~~~i~~~~~d------------------------------ 224 (338)
... .+ ..+.|+|++..+++...+
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 000 00 146788988877765432
Q ss_pred -------------CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCC-C
Q 019603 225 -------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-G 290 (338)
Q Consensus 225 -------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~-~ 290 (338)
+.+..||..+++....+.... ......+..++..++.++.||.+++||..+++.+..+.-.. .
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~ 520 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV 520 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc
Confidence 678999999998776655432 23445577788899999999999999999999999887433 3
Q ss_pred ceEEEEEcCCCceEEe
Q 019603 291 VVACLKWAPRRAMFVA 306 (338)
Q Consensus 291 ~v~~l~~~p~~~~l~s 306 (338)
.-.-+.|.++++++++
T Consensus 521 ~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 521 VAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CSCCEEEEETTEEEEE
T ss_pred ccCCEEEEeCCEEEEE
Confidence 3344778788874443
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=3e-09 Score=103.43 Aligned_cols=186 Identities=11% Similarity=0.076 Sum_probs=120.2
Q ss_pred CCccceEEEEEcCCCCEEE-----EEECCCeEEEEECCCcceeee-eeecCccEEEEcCCCCEEEEEEcCC---------
Q 019603 115 GHKERVISLCMSPVNDSFM-----SGSLDHSVRIWDLRVNACQGI-LRLRGRPTVAFDQQGLVFAVAMEAG--------- 179 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~~~l~-----Sgs~D~~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dg--------- 179 (338)
+|...+.++.|+||+++|+ +|+.+.+|++||+.+++.... +.......++|+ ||..|+....+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 4666788899999999887 344457899999999886432 221112357889 999888887764
Q ss_pred ----eEEEEeCCCCCCCCCeeEEecC---CCCceEEEEEcCCCCEEEEEecC----CcEEEEEccCCe-eEEEeeeCCCC
Q 019603 180 ----AIKLFDSRSYDKGPFDTFLVGG---DTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGE-KRCGFSLEPSP 247 (338)
Q Consensus 180 ----~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~v~~sp~~~~i~~~~~d----~~i~i~~~~~~~-~~~~~~~~~~~ 247 (338)
.|++|++.+.... ...+... +......+.|+|||++++..... +.++++++.++. ....+. .+.
T Consensus 205 ~~~~~v~~~~lgt~~~~--~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~--~~~ 280 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQED--DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ--GDL 280 (693)
T ss_dssp CCCCEEEEEETTSCGGG--CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE--CSS
T ss_pred CCCcEEEEEECCCCccc--ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe--CCC
Confidence 3888887653211 1222222 23346788999999988765542 479999987653 112222 222
Q ss_pred CCCeeEEECCCCCEEE-EEcCC---CcEEEEECCCCCe--EeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 248 NTNTEATFTPDGQYVV-SGSGD---GTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~-sgs~D---g~i~vWd~~~~~~--~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
...... ++++|..|+ ....| +.|.+|++.++.. ...+..|...+. .|+|++..|+...
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEE
Confidence 223333 666666554 44333 6899999987654 345666766665 8999999888765
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=5.6e-11 Score=106.77 Aligned_cols=203 Identities=15% Similarity=0.072 Sum_probs=111.6
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCc
Q 019603 38 KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHK 117 (338)
Q Consensus 38 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~ 117 (338)
++..+++++.|+.|..||..+|+.+..... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~----------------------------------------------- 38 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--D----------------------------------------------- 38 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--C-----------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--C-----------------------------------------------
Confidence 578899999999999999999887654321 0
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc----cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 193 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 193 (338)
.+.+..+..+++.+++++.|+.|+.||.++++....+..... ....+. .+..+++++.++.+..||.++.+..
T Consensus 39 -~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~- 115 (369)
T 2hz6_A 39 -PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQ- 115 (369)
T ss_dssp -CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------
T ss_pred -CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEE-
Confidence 000111223456777788999999999988876544332211 001111 2345667788899999998765421
Q ss_pred CeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCC---CEEEEEcCCCc
Q 019603 194 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG---QYVVSGSGDGT 270 (338)
Q Consensus 194 ~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~---~~l~sgs~Dg~ 270 (338)
..+.. +. ...++|++..+++++.++.++.||..+|+....+..... ...+++++. ..++.++.||.
T Consensus 116 -w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~ 184 (369)
T 2hz6_A 116 -QTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGL 184 (369)
T ss_dssp ------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCE
T ss_pred -EEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCCE
Confidence 11111 11 134567888899999999999999988876544432211 112233332 55677889999
Q ss_pred EEEEECCCCCeEeEeeCCCCceEEEEEcCCCce
Q 019603 271 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAM 303 (338)
Q Consensus 271 i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 303 (338)
|+.||..+++.+-.+......+....+++++..
T Consensus 185 v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 185 VVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp EEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred EEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 999999999887776644333344566677753
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.06 E-value=3.2e-09 Score=94.18 Aligned_cols=236 Identities=10% Similarity=0.008 Sum_probs=146.3
Q ss_pred cCCcceeEEEeecCCCEEEEeeC-----CCcEEEEEcCCCeeEeEEeecc------cCeeeEEEeecCCeeEEecCccCC
Q 019603 25 DFGGKINSLDFHRKDDLLVTASD-----DDSVRLYDIVSAKLIKTTYHKK------HGADCVCFTHHPSSVICSTKYNLD 93 (338)
Q Consensus 25 ~h~~~V~~l~~s~~~~~l~s~s~-----D~~i~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
+|-..+.+++|+++|++.++-.. +..|.+||+.+++.++.+.... ....-+.+......++.+.. . .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~-~-~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP-A-P 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC-C-S
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC-c-c
Confidence 45578999999999986665433 6889999999998776654321 12344555543334433321 0 0
Q ss_pred CCCceeEEEEccCCeEEEeecCCccceE-EEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEE
Q 019603 94 STGESLRYLSMYDNRILRYFKGHKERVI-SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF 172 (338)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~H~~~V~-~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (338)
.....+.+|++.+++..+.+.+|..... ...+.+++..+.+.+.|++++.|.. +..-++++|+|..+
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~------------~~~gia~s~dg~~l 209 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL------------GVNGIVLDAENEWL 209 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC------------CEEEEEECTTSCEE
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec------------ccceeEeccCCCEE
Confidence 0346899999998888777776643211 1334456777778888898877752 12347889999877
Q ss_pred EEEEcCC-eEEEEeCCCCCCCCC------eeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC
Q 019603 173 AVAMEAG-AIKLFDSRSYDKGPF------DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 245 (338)
Q Consensus 173 ~~~~~dg-~i~i~d~~~~~~~~~------~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~ 245 (338)
..+..++ .+..++......... ..+...++......++++++|..+++...++.|.+|+..+++....... .
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~ 288 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-E 288 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-G
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-C
Confidence 7766555 444444221000000 0001111222344578999999888888889999999855654333322 1
Q ss_pred CCCCCeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 246 SPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
.......++|.++|.++++.+..+.+.+|+
T Consensus 289 ~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ceecCCeeEECCCCcEEEEeCccccccccc
Confidence 234578899999999888887665554454
No 223
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.06 E-value=3.5e-08 Score=85.73 Aligned_cols=192 Identities=12% Similarity=0.131 Sum_probs=123.1
Q ss_pred CccceEEEEEcCCCCEEEE-------EECCCeEEEEECCCcceeeeee-----e-cCccEEEEcCC-CCEEEEEEcCCeE
Q 019603 116 HKERVISLCMSPVNDSFMS-------GSLDHSVRIWDLRVNACQGILR-----L-RGRPTVAFDQQ-GLVFAVAMEAGAI 181 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~S-------gs~D~~I~iWd~~~~~~~~~~~-----~-~~~~~~~~~~~-~~~~~~~~~dg~i 181 (338)
.-....+++|+++++.+++ +..++.|.+||..+++...... . .....+.++++ |.++++. ..+.+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCE
Confidence 3345678999999988887 6888999999987776532221 1 22234778888 6655544 44578
Q ss_pred EEEeCCCCCCCCCeeE-Ee--cC-CCCceEEEEEcCCCCEEEEEecC---------------CcEEEEEccCCeeEEEee
Q 019603 182 KLFDSRSYDKGPFDTF-LV--GG-DTAEVCDIKFSNDGKSMLLTTTN---------------NNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~-~~--~~-~~~~i~~v~~sp~~~~i~~~~~d---------------~~i~i~~~~~~~~~~~~~ 242 (338)
..||.. .. +..+ .. .+ ....+..+.++|+|+.+++...+ +.++.++.. ++......
T Consensus 95 ~~~d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 95 LVVQTD-GT---FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEETT-SC---EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred EEEeCC-CC---EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 888865 22 1111 00 01 12347789999999877666554 467777755 44332221
Q ss_pred eCCCCCCCeeEEEC----CCCCEEE-EEcCCCcEEEEECC-CCC-----eEeEeeCCC-CceEEEEEcCCCceEEeec--
Q 019603 243 LEPSPNTNTEATFT----PDGQYVV-SGSGDGTLHAWNIN-TRN-----EVACWNGNI-GVVACLKWAPRRAMFVAAS-- 308 (338)
Q Consensus 243 ~~~~~~~~~~~~fs----~~~~~l~-sgs~Dg~i~vWd~~-~~~-----~~~~~~~h~-~~v~~l~~~p~~~~l~s~s-- 308 (338)
. ......++|+ |+++.|+ +...++.|++|+.. +++ ....+..+. +.+..+++++++.++++..
T Consensus 170 ~---~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 170 A---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp E---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred C---CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 1 1234678999 9997654 44678999999986 443 223344444 6788999999999888753
Q ss_pred ceEEEeee
Q 019603 309 SVLSFWIP 316 (338)
Q Consensus 309 ~~~~iw~~ 316 (338)
..+.+|.+
T Consensus 247 ~~i~~~d~ 254 (314)
T 1pjx_A 247 SHIEVFGP 254 (314)
T ss_dssp TEEEEECT
T ss_pred CEEEEEcC
Confidence 45666644
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.04 E-value=3.6e-08 Score=87.99 Aligned_cols=262 Identities=6% Similarity=-0.095 Sum_probs=160.5
Q ss_pred EEEEeeCCC----cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC----CCCCceeEEEEccCCeEEEe
Q 019603 41 LLVTASDDD----SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL----DSTGESLRYLSMYDNRILRY 112 (338)
Q Consensus 41 ~l~s~s~D~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~ 112 (338)
..++-..++ +|.+.|..+++.+.++.....+ .+.+++++..++.+..+.- ...++.+.+||..+++.+.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 334444444 7889999999998887655554 6888888887776542100 01247899999999999888
Q ss_pred ecCC-------ccceEEEEEcCCCCEEEEEEC--CCeEEE--EECCCcceeeeeeecCccEEEEcCCC-CEEEEEEcCCe
Q 019603 113 FKGH-------KERVISLCMSPVNDSFMSGSL--DHSVRI--WDLRVNACQGILRLRGRPTVAFDQQG-LVFAVAMEAGA 180 (338)
Q Consensus 113 ~~~H-------~~~V~~l~~~~~~~~l~Sgs~--D~~I~i--Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~ 180 (338)
+.-. -..-..+.++|++++++.+.. +..|.+ +|+.+ ...+...+. ..+.|++ ..+++.+.|+.
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEECCCCTTS
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEEEcCCCC
Confidence 7533 123457899999998887764 467999 99876 334433222 1122333 23444556666
Q ss_pred EEEEeCCC-----CCCCCC--eeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe--eEEEeeeCC------
Q 019603 181 IKLFDSRS-----YDKGPF--DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE--KRCGFSLEP------ 245 (338)
Q Consensus 181 i~i~d~~~-----~~~~~~--~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~--~~~~~~~~~------ 245 (338)
+..+|... ...... ..+.. + ..+. . .+++..++..+. +.+.+.|...+. ....+.+..
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~v-g-~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNC-S-SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD 259 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCB-C-SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred EEEEECccccccCCeEEEEeeeeeeC-C-CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence 66666543 110000 00001 1 1222 2 566666676667 999999986432 111111110
Q ss_pred --CCCCCeeEEECCCCCEEEEEcC---------CCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCc-eEEee---cce
Q 019603 246 --SPNTNTEATFTPDGQYVVSGSG---------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAA---SSV 310 (338)
Q Consensus 246 --~~~~~~~~~fs~~~~~l~sgs~---------Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~---s~~ 310 (338)
.+.....++|+|+++.++.+.. ++.+.++|..+++.+..+.... ..++|+|+||++ .+++. +.+
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCe
Confidence 0111222789999998886532 2356699999999998886543 588999999997 44444 356
Q ss_pred EEEeeeC
Q 019603 311 LSFWIPN 317 (338)
Q Consensus 311 ~~iw~~~ 317 (338)
+.++...
T Consensus 339 VsVID~~ 345 (368)
T 1mda_H 339 LDIYDAA 345 (368)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 7777644
No 225
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.03 E-value=9.1e-08 Score=82.93 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=118.8
Q ss_pred CCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCC
Q 019603 115 GHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 192 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 192 (338)
.+...-.+..|++++ ..+++...++.|..||..+++.. .+.... ...+.++++|.++++ . ++.|.+||..+..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~-- 84 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS-- 84 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE--
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc--
Confidence 344455678899865 46677778899999999877642 333322 345788999995544 3 5678889876432
Q ss_pred CCeeEEec--C-CCCceEEEEEcCCCCEEEEEecC-----------CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 193 PFDTFLVG--G-DTAEVCDIKFSNDGKSMLLTTTN-----------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 193 ~~~~~~~~--~-~~~~i~~v~~sp~~~~i~~~~~d-----------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
+..+... + ....+..+.++|+|+.++..... +.++.++.. ++....... ......++|+|+
T Consensus 85 -~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~---~~~pngi~~spd 159 (297)
T 3g4e_A 85 -AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ---VDISNGLDWSLD 159 (297)
T ss_dssp -EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE---ESBEEEEEECTT
T ss_pred -EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeec---cccccceEEcCC
Confidence 2111111 1 12347889999999966544322 234444432 332221111 123467999999
Q ss_pred CCEE-EEEcCCCcEEEEEC--CCCCe-----EeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 259 GQYV-VSGSGDGTLHAWNI--NTRNE-----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 259 ~~~l-~sgs~Dg~i~vWd~--~~~~~-----~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
++.| ++.+.++.|.+|++ .++.. ...+..+.+...++++.+++++.++.. ..+..|.
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 9876 45667889999997 34443 223334456788999999998887764 3355553
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.99 E-value=1.9e-07 Score=82.15 Aligned_cols=186 Identities=12% Similarity=0.067 Sum_probs=117.6
Q ss_pred ceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeec-CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCee
Q 019603 119 RVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 196 (338)
Q Consensus 119 ~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 196 (338)
...+..|+|++. .+++...++.|..||...++.. .+... ....+.++++|.++++. . +.+.+||..+.. +..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~---~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGV---LTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCC---EEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCc---EEE
Confidence 346778999754 6677778899999999876543 23322 23347788998766643 4 458889875432 211
Q ss_pred EEec--C-CCCceEEEEEcCCCCEEEEEec------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEE-EEc
Q 019603 197 FLVG--G-DTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGS 266 (338)
Q Consensus 197 ~~~~--~-~~~~i~~v~~sp~~~~i~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~-sgs 266 (338)
+... + ....+..+.++|+|+.++.... .+.++.++ +++...... .......++|+|+|+.|+ +.+
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~---~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA---DISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE---EESSEEEEEECTTSCEEEEEET
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC---CCcccCCeEEcCCCCEEEEEEC
Confidence 1111 1 1235788999999986654432 24566666 454332211 112356789999998764 456
Q ss_pred CCCcEEEEECC--CC-Ce-----EeEeeCCCCceEEEEEcCCCceEEee--cceEEEee
Q 019603 267 GDGTLHAWNIN--TR-NE-----VACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWI 315 (338)
Q Consensus 267 ~Dg~i~vWd~~--~~-~~-----~~~~~~h~~~v~~l~~~p~~~~l~s~--s~~~~iw~ 315 (338)
.++.|++|++. ++ +. ...+....+...++++.+++.++++. ...+..|.
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 67899999986 55 31 22333345677899999999987776 34565554
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.99 E-value=2.5e-08 Score=86.76 Aligned_cols=193 Identities=12% Similarity=0.062 Sum_probs=123.8
Q ss_pred ecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeeecC--ccEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 019603 113 FKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSY 189 (338)
Q Consensus 113 ~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 189 (338)
+..+.....+..|+|+++ .++++..++.|..||. .++. ..+.... ...+.++++|.++++...++.|..|+.. .
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 444555677889999988 6778888999999998 4443 2333222 2347889999977766666789888853 2
Q ss_pred CCCCCeeEE--ecC-CCCceEEEEEcCCCCEEEE----Eec-------------CCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 190 DKGPFDTFL--VGG-DTAEVCDIKFSNDGKSMLL----TTT-------------NNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 190 ~~~~~~~~~--~~~-~~~~i~~v~~sp~~~~i~~----~~~-------------d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
. +..+. ..+ ....+..+.++|+|+.+++ +.. .+.|+.++..+++..... ....
T Consensus 117 ~---~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~~ 189 (305)
T 3dr2_A 117 Q---AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLDH 189 (305)
T ss_dssp C---EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EESS
T ss_pred C---EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCCC
Confidence 1 21111 011 1123567889999987665 221 245777877666543322 1123
Q ss_pred CeeEEECCCCCEEEEEcCC------CcEEEEECCCCCe--EeEe-eCCCCceEEEEEcCCCceEEeecceEEEee
Q 019603 250 NTEATFTPDGQYVVSGSGD------GTLHAWNINTRNE--VACW-NGNIGVVACLKWAPRRAMFVAASSVLSFWI 315 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~D------g~i~vWd~~~~~~--~~~~-~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~ 315 (338)
...++|+|+++.|+.+... +.|++|++..+.. ...+ ....+...++++.+++++.++....+.+|.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~ 264 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFD 264 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEEC
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEEC
Confidence 5678999999988777655 7899999875431 1112 223455677999999997777655555554
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=2.1e-07 Score=90.13 Aligned_cols=267 Identities=13% Similarity=0.058 Sum_probs=162.3
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccC---------eeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHG---------ADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
+..|+.++.++.|..+|..+|+.+......... ...-........++.. ..++.+..+|..+|+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~------~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVG------AWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEE------CTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEE------cCCCEEEEEECCCCCE
Confidence 456777888899999999999988765443211 0000111133344433 2347899999999998
Q ss_pred EEeecCC-c----cceEEEEEcCCCCEEEEEEC------CCeEEEEECCCcceeeeeeecCc------------------
Q 019603 110 LRYFKGH-K----ERVISLCMSPVNDSFMSGSL------DHSVRIWDLRVNACQGILRLRGR------------------ 160 (338)
Q Consensus 110 ~~~~~~H-~----~~V~~l~~~~~~~~l~Sgs~------D~~I~iWd~~~~~~~~~~~~~~~------------------ 160 (338)
+..+..+ . ..+.+--.- .+..++.++. |+.|+.||.++++.+..+.....
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred EeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 8877654 1 112211001 1344444443 79999999999987655543110
Q ss_pred ----------------cEEEEcCCCCEEEEEEcCC-------------------eEEEEeCCCCCCCCCeeEEecCC---
Q 019603 161 ----------------PTVAFDQQGLVFAVAMEAG-------------------AIKLFDSRSYDKGPFDTFLVGGD--- 202 (338)
Q Consensus 161 ----------------~~~~~~~~~~~~~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~--- 202 (338)
...++++++..+.++..++ .|..+|.++.+. ...+....+
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~~~~~~d~w 307 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHYQETPGDNW 307 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCS
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEEecCCCccc
Confidence 1357788888887776654 477888765432 222222222
Q ss_pred ----CCceEEEEEcCCC---CEEEEEecCCcEEEEEccCCeeEEEeeeCCCC----------------------------
Q 019603 203 ----TAEVCDIKFSNDG---KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---------------------------- 247 (338)
Q Consensus 203 ----~~~i~~v~~sp~~---~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---------------------------- 247 (338)
......+....+| ..++.++.++.++++|..+|+.+..+.....+
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 1122223444467 56888888999999999999887655432110
Q ss_pred -----CCCeeEEECCCCCEEEEEcC-------------------------------------------CCcEEEEECCCC
Q 019603 248 -----NTNTEATFTPDGQYVVSGSG-------------------------------------------DGTLHAWNINTR 279 (338)
Q Consensus 248 -----~~~~~~~fs~~~~~l~sgs~-------------------------------------------Dg~i~vWd~~~~ 279 (338)
..-..++|+|++.+++.... .|.|+.||+.++
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG 467 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ 467 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence 00024689999988887543 278999999999
Q ss_pred CeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 280 NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 280 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
+.+-.++. ...+++..+.+++..++.++ +.+.+|.
T Consensus 468 ~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 468 KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 88766653 33445555666666666654 3444443
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=1.8e-06 Score=77.95 Aligned_cols=210 Identities=10% Similarity=0.138 Sum_probs=136.5
Q ss_pred CceeEEEEccCC----eEEEeec-------CCccceEEEEEcCCCCEEEEEECC------CeEEEEECCCcceeeeeeec
Q 019603 96 GESLRYLSMYDN----RILRYFK-------GHKERVISLCMSPVNDSFMSGSLD------HSVRIWDLRVNACQGILRLR 158 (338)
Q Consensus 96 ~~~i~~~~~~~~----~~~~~~~-------~H~~~V~~l~~~~~~~~l~Sgs~D------~~I~iWd~~~~~~~~~~~~~ 158 (338)
+..|.++|+.+. +..+++. .-...-..+...|++ .++|+..+ +.|.+.|.++.+.+..+...
T Consensus 105 s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~ 183 (462)
T 2ece_A 105 SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID 183 (462)
T ss_dssp TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB
T ss_pred CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC
Confidence 378999998654 5666652 111234557788999 77777666 79999999999988777654
Q ss_pred Ccc-----EEEEcCCCCEEEEEE-------------------cCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEE--c
Q 019603 159 GRP-----TVAFDQQGLVFAVAM-------------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF--S 212 (338)
Q Consensus 159 ~~~-----~~~~~~~~~~~~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~--s 212 (338)
..+ -+.++|++..+++.. ..+.|.+||+...+ ....+.+.........+.| +
T Consensus 184 ~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~ 261 (462)
T 2ece_A 184 RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHD 261 (462)
T ss_dssp CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSS
T ss_pred CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeEC
Confidence 332 266799998777763 36899999987531 1222222212223445556 9
Q ss_pred CCCCEEEEEec------CCcEEEEEccCCeeEEEee--eCCC----------------CCCCeeEEECCCCCEEEEEc-C
Q 019603 213 NDGKSMLLTTT------NNNIYVLDAYGGEKRCGFS--LEPS----------------PNTNTEATFTPDGQYVVSGS-G 267 (338)
Q Consensus 213 p~~~~i~~~~~------d~~i~i~~~~~~~~~~~~~--~~~~----------------~~~~~~~~fs~~~~~l~sgs-~ 267 (338)
|++++..++.. +++|.+|....+....... .... ......+.+||||++|+.+. .
T Consensus 262 Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg 341 (462)
T 2ece_A 262 PTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG 341 (462)
T ss_dssp TTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred CCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence 99998777764 4578776655443222111 0000 23467899999999988764 4
Q ss_pred CCcEEEEECCC---CCeEeEeeCC-----------C---CceEEEEEcCCCceEEeec
Q 019603 268 DGTLHAWNINT---RNEVACWNGN-----------I---GVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 268 Dg~i~vWd~~~---~~~~~~~~~h-----------~---~~v~~l~~~p~~~~l~s~s 308 (338)
.+.|.++|+.. .+.+..+.-. . +.-..++++||+++|.++.
T Consensus 342 ~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 342 IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 77999999863 3444444321 0 1357899999999888876
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.97 E-value=4.2e-06 Score=74.76 Aligned_cols=256 Identities=15% Similarity=0.062 Sum_probs=149.9
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCc
Q 019603 38 KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHK 117 (338)
Q Consensus 38 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~ 117 (338)
++..++.++.|+.|..+|..+|+.+............... ....++..+ .++.+..+|..+++.+..+....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~------~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHT------SNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEEC------TTSEEEEEETTTCCEEEEEECCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEc------CCCeEEEEECCCCcEEEEEeCCC
Confidence 4567788889999999999999987654433211111111 223333322 24678999998888776655332
Q ss_pred cce-----EEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccE---------EEEcC--CCCEEEEEEcCCeE
Q 019603 118 ERV-----ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT---------VAFDQ--QGLVFAVAMEAGAI 181 (338)
Q Consensus 118 ~~V-----~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~dg~i 181 (338)
... ...... +..++.++.++.|..+|.++++............ +...| .+..+.+++.++.+
T Consensus 174 ~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l 251 (376)
T 3q7m_A 174 PSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNL 251 (376)
T ss_dssp -----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCE
T ss_pred CceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEE
Confidence 111 111122 4577888899999999999888765544321100 00011 23456667778899
Q ss_pred EEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCE
Q 019603 182 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 261 (338)
Q Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 261 (338)
..+|.++.+. .... .......+.. ++..+++++.++.+..+|..+++.......... ........ .+..
T Consensus 252 ~~~d~~tG~~--~w~~----~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~ 320 (376)
T 3q7m_A 252 TALDLRSGQI--MWKR----ELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGN 320 (376)
T ss_dssp EEEETTTCCE--EEEE----CCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTE
T ss_pred EEEECCCCcE--Eeec----cCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCE
Confidence 9999765431 1111 1112333333 466788888899999999998886654431111 11222222 3578
Q ss_pred EEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-ceEEEe
Q 019603 262 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFW 314 (338)
Q Consensus 262 l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw 314 (338)
|+.++.+|.|+++|..+++.+..+....+.+.+...-.++.+++... +.+..+
T Consensus 321 l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 321 LVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEE
Confidence 88899999999999999998877765333333211122444444332 445544
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.95 E-value=4.9e-07 Score=87.65 Aligned_cols=268 Identities=13% Similarity=0.109 Sum_probs=160.5
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCe---------eeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGA---------DCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
+..|+.++.++.|..+|..+|+.+.......... ..-........++..+ .++.+..+|..+|+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~------~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV------LDGRLEAIDAKTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC------TTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc------cCCEEEEEECCCCCE
Confidence 5677888889999999999999887654332110 0000111233444332 347899999999998
Q ss_pred EEeecC--CccceEEEEEcC---CCCEEEEEE-----CCCeEEEEECCCcceeeeeeecC--------------------
Q 019603 110 LRYFKG--HKERVISLCMSP---VNDSFMSGS-----LDHSVRIWDLRVNACQGILRLRG-------------------- 159 (338)
Q Consensus 110 ~~~~~~--H~~~V~~l~~~~---~~~~l~Sgs-----~D~~I~iWd~~~~~~~~~~~~~~-------------------- 159 (338)
+..+.. +......+..+| ++..++..+ .|+.|..||.++++.+-.+....
T Consensus 144 ~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 144 AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 876653 221111112222 344444322 37999999999998765554210
Q ss_pred ----------c---cEEEEcCCCCEEEEEEcCCe-------------------EEEEeCCCCCCCCCeeEEecCC-----
Q 019603 160 ----------R---PTVAFDQQGLVFAVAMEAGA-------------------IKLFDSRSYDKGPFDTFLVGGD----- 202 (338)
Q Consensus 160 ----------~---~~~~~~~~~~~~~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~----- 202 (338)
. ...++++++.++.++..++. +..+|.++.+. ...+....+
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~--~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY--VWHYQTTPGDAWDY 301 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE--EEEEESSTTCCSCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce--eEeeecCCcccccc
Confidence 0 13678888888888877653 88888876532 222222111
Q ss_pred --CCceEEEEEcCCCC---EEEEEecCCcEEEEEccCCeeEEEeeeCCCC------------------------------
Q 019603 203 --TAEVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP------------------------------ 247 (338)
Q Consensus 203 --~~~i~~v~~sp~~~---~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~------------------------------ 247 (338)
...........+|+ .++.++.++.++++|..+|+.+.........
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 11222223333554 6778888999999999999876433322100
Q ss_pred -------CCCeeEEECCCCCEEEEEcC---------------------------------------------CCcEEEEE
Q 019603 248 -------NTNTEATFTPDGQYVVSGSG---------------------------------------------DGTLHAWN 275 (338)
Q Consensus 248 -------~~~~~~~fs~~~~~l~sgs~---------------------------------------------Dg~i~vWd 275 (338)
..-..++|+|+..+|+.... +|.|+.||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 00113689999888887532 47899999
Q ss_pred CCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 276 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 276 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
+.+++.+-.++.+.. +..-.+...+..++.++ +.+++|.
T Consensus 462 ~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEE
Confidence 999998877765543 33335556666666665 3455443
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.94 E-value=1e-05 Score=68.58 Aligned_cols=249 Identities=7% Similarity=-0.005 Sum_probs=143.1
Q ss_pred CEEEEeeCCCcEEEEEcCCCeeE-----eEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeec
Q 019603 40 DLLVTASDDDSVRLYDIVSAKLI-----KTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFK 114 (338)
Q Consensus 40 ~~l~s~s~D~~i~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 114 (338)
++|+-+.. +.|+.+++...... ..+.........+.+.+....++.+. ...+.|..++..+......+.
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d-----~~~~~I~~~~~~g~~~~~~~~ 75 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTD-----ISEPSIGRASLHGGEPTTIIR 75 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEE-----TTTTEEEEEESSSCCCEEEEC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEE-----CCCCEEEEEecCCCCcEEEEE
Confidence 34555443 47888887654321 01111112234455555444555432 234678888887655444333
Q ss_pred CCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeee--cCccEEEEcCCCC-EEEEEEc--CCeEEEEeCCC
Q 019603 115 GHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQGL-VFAVAME--AGAIKLFDSRS 188 (338)
Q Consensus 115 ~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~--dg~i~i~d~~~ 188 (338)
........++++++++ .+++-...+.|.++|+........... ....-++++|++. ++++... .+.|..++...
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 3335678999999765 455666678999999864332212211 2233478999654 4444433 36777777542
Q ss_pred CCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 189 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
.. . ..+..........++++|++..++++. ..+.|.+++..+.......... .....+++. .+..+++...
T Consensus 156 ~~---~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~ 227 (267)
T 1npe_A 156 TN---R-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWK 227 (267)
T ss_dssp CC---C-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETT
T ss_pred CC---c-EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECC
Confidence 11 1 122222234577899999877665554 4678999998644332222211 223456654 3444445556
Q ss_pred CCcEEEEECCCCCeEeEeeCCC-CceEEEEEcCCCc
Q 019603 268 DGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRA 302 (338)
Q Consensus 268 Dg~i~vWd~~~~~~~~~~~~h~-~~v~~l~~~p~~~ 302 (338)
++.|+++|..+++.+..+.... ....+|++.|++-
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 7899999999998888886432 3467888888754
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.93 E-value=7.8e-07 Score=80.35 Aligned_cols=228 Identities=16% Similarity=0.105 Sum_probs=137.3
Q ss_pred cCCCEEE-EeeCCCcEEEEEcCCC----eeEeEEeec----cc---CeeeEEEeecCCeeEEecCcc-CCCCCceeEEEE
Q 019603 37 RKDDLLV-TASDDDSVRLYDIVSA----KLIKTTYHK----KH---GADCVCFTHHPSSVICSTKYN-LDSTGESLRYLS 103 (338)
Q Consensus 37 ~~~~~l~-s~s~D~~i~iWd~~~~----~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 103 (338)
+++++|+ ++..+++|.++|..+. +..+++... .. ....+.+.+++ ++.+.... .....+.+-++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 7777655 4667899999999754 555555210 00 11223344444 33322111 112236799999
Q ss_pred ccCCeEEEeecC--Cc-cceEEEEEcCCCCEEEEEE-------------------CCCeEEEEECCCcceeeeeeecC--
Q 019603 104 MYDNRILRYFKG--HK-ERVISLCMSPVNDSFMSGS-------------------LDHSVRIWDLRVNACQGILRLRG-- 159 (338)
Q Consensus 104 ~~~~~~~~~~~~--H~-~~V~~l~~~~~~~~l~Sgs-------------------~D~~I~iWd~~~~~~~~~~~~~~-- 159 (338)
..+.+.+.++.. .. ..-..+-|+|+++.++|.. .+.+|.+||+.+++...++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 999998888852 22 2234578899999988885 37999999999887777777641
Q ss_pred -cc-EEEE--cCCCCEEEEEE------cCCeEEEEeCCCCCCCCCeeEEecC----------------CCCceEEEEEcC
Q 019603 160 -RP-TVAF--DQQGLVFAVAM------EAGAIKLFDSRSYDKGPFDTFLVGG----------------DTAEVCDIKFSN 213 (338)
Q Consensus 160 -~~-~~~~--~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~----------------~~~~i~~v~~sp 213 (338)
.+ -+.| +|++.+..++. .++.|.+|..............+.. .......+.+||
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 12 2334 99998776665 4567766543211000000000000 013467788999
Q ss_pred CCCEEEEEec-CCcEEEEEccCC---eeEEEeeeCCC------------CCCCeeEEECCCCCEEEEEc
Q 019603 214 DGKSMLLTTT-NNNIYVLDAYGG---EKRCGFSLEPS------------PNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 214 ~~~~i~~~~~-d~~i~i~~~~~~---~~~~~~~~~~~------------~~~~~~~~fs~~~~~l~sgs 266 (338)
||+++.++.. .+.|.++|.... +........+. ...-..+.++|||++|+.+.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9998887776 678999997522 33322222211 01346789999999999887
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.89 E-value=4e-06 Score=74.86 Aligned_cols=231 Identities=12% Similarity=0.032 Sum_probs=138.6
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc--------CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE
Q 019603 38 KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH--------GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 38 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
.+..++.++.++.|..+|..+|+.+........ .............++..+ .++.+..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~------~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS------EKAQVYALNTSDGTV 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE------TTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc------CCCEEEEEECCCCCE
Confidence 366788888899999999999998765443211 111112222344444432 236789999998887
Q ss_pred EEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc-------EEEEcCCCCEEEEEEcCCeEE
Q 019603 110 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-------TVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 110 ~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~dg~i~ 182 (338)
+..+............. +..++.++.++.|..+|.++++........... ..... +..+.++..++.+.
T Consensus 126 ~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 126 AWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVS 201 (376)
T ss_dssp EEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEE
T ss_pred EEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEE
Confidence 76655432221111222 457888899999999999998876555432211 11112 34566778888999
Q ss_pred EEeCCCCCCCCCeeEEecCCCC-----ceEEEEEcC--CCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEE
Q 019603 183 LFDSRSYDKGPFDTFLVGGDTA-----EVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 255 (338)
Q Consensus 183 i~d~~~~~~~~~~~~~~~~~~~-----~i~~v~~sp--~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~f 255 (338)
.+|.++... ........... .+..+...| .+..+++++.++.+..+|..+++........ ......
T Consensus 202 ~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~- 274 (376)
T 3q7m_A 202 AVLMEQGQM--IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFI- 274 (376)
T ss_dssp EEETTTCCE--EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEE-
T ss_pred EEECCCCcE--EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCce-
Confidence 999765431 11111110000 000000111 2456777888999999999888766544321 122233
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEeEee
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~ 286 (338)
.++..|+.++.++.|+.+|..+++.+-...
T Consensus 275 -~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 275 -VDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp -EETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred -EECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 346778888889999999999998776554
No 235
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.86 E-value=7.5e-07 Score=74.74 Aligned_cols=190 Identities=12% Similarity=0.159 Sum_probs=126.6
Q ss_pred EEEeecCCc--cceEEEEEcCCCCEEEEEECCC--eEEEEECCCcceeeeeeecCcc-EEEEcCCCC-EEEEEEcCCeEE
Q 019603 109 ILRYFKGHK--ERVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRP-TVAFDQQGL-VFAVAMEAGAIK 182 (338)
Q Consensus 109 ~~~~~~~H~--~~V~~l~~~~~~~~l~Sgs~D~--~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~dg~i~ 182 (338)
.++++ .|. .....|.|+ ++..+.|.|.+| .|+++|+++++....+.+.... ...+.+.+. ++.+...++.+.
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 44555 243 456889998 667777888877 9999999999987777665432 222333344 455556789999
Q ss_pred EEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC--CC-CCCeeEEECCCC
Q 019603 183 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SP-NTNTEATFTPDG 259 (338)
Q Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~--~~-~~~~~~~fs~~~ 259 (338)
+||..+.+. ...+...++. ..++++++.++.+...+.++++|..+.+......... .+ ...+.+.|. +|
T Consensus 111 v~D~~t~~~--~~ti~~~~eG-----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 111 VWNIRNLRQ--VRSFNYDGEG-----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp EEETTTCCE--EEEEECSSCC-----CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEECccCcE--EEEEECCCCc-----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 999876432 2233332221 2233577777777667889999998887666544421 11 233456665 77
Q ss_pred CEEEEEcCCCcEEEEECCCCCeEeEeeCC------------CCceEEEEEcCCCceEEeec
Q 019603 260 QYVVSGSGDGTLHAWNINTRNEVACWNGN------------IGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 260 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h------------~~~v~~l~~~p~~~~l~s~s 308 (338)
+..+..-.+..|.+.|..+++.+..+.-. ....+.|||+|++..|..++
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 76666657889999999999998887632 23568899999876555554
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.85 E-value=1.2e-06 Score=81.92 Aligned_cols=211 Identities=12% Similarity=0.047 Sum_probs=135.5
Q ss_pred CCceeEEEEccCCeEEEeecC-CccceEEEEE-c-CCCCEEEEEE------------------CCCeEEEEECCCcceee
Q 019603 95 TGESLRYLSMYDNRILRYFKG-HKERVISLCM-S-PVNDSFMSGS------------------LDHSVRIWDLRVNACQG 153 (338)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~-H~~~V~~l~~-~-~~~~~l~Sgs------------------~D~~I~iWd~~~~~~~~ 153 (338)
....+.+.|+.+.++.+.+.- .......+.+ + |++++++.++ .++.+.+.|..+.+...
T Consensus 110 ~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~ 189 (595)
T 1fwx_A 110 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW 189 (595)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence 346799999999998774421 1234778887 5 8999988774 35689999999888777
Q ss_pred eeeecCcc-EEEEcCCCCEEEEEEcCC---------------e-----------------------EEEEeCCCCCCCCC
Q 019603 154 ILRLRGRP-TVAFDQQGLVFAVAMEAG---------------A-----------------------IKLFDSRSYDKGPF 194 (338)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~dg---------------~-----------------------i~i~d~~~~~~~~~ 194 (338)
.+...+.+ -+.++|+|..+.+.+.+. . +.+.|.+......+
T Consensus 190 qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~ 269 (595)
T 1fwx_A 190 QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLF 269 (595)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSS
T ss_pred EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCcee
Confidence 77765543 378899998777766432 2 34444433110110
Q ss_pred eeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccCCee----------EEEeeeCCCCCCCeeEEECCCCCEEE
Q 019603 195 DTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEK----------RCGFSLEPSPNTNTEATFTPDGQYVV 263 (338)
Q Consensus 195 ~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~----------~~~~~~~~~~~~~~~~~fs~~~~~l~ 263 (338)
....-. .....++.++|||+++++++. +++|.++|..+.+. ....+... -.....++|+|+|...+
T Consensus 270 ~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~ 346 (595)
T 1fwx_A 270 TRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYT 346 (595)
T ss_dssp EEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEE
T ss_pred EEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEE
Confidence 011100 112335789999998887764 78999999875421 00111111 12456789999994444
Q ss_pred EEcCCCcEEEEECCC----------CCeEeEeeCCCCc-----eEEEEEcCCCceEEeec
Q 019603 264 SGSGDGTLHAWNINT----------RNEVACWNGNIGV-----VACLKWAPRRAMFVAAS 308 (338)
Q Consensus 264 sgs~Dg~i~vWd~~~----------~~~~~~~~~h~~~-----v~~l~~~p~~~~l~s~s 308 (338)
+.--|++|-+||+.+ .+.+..+.-|-.. -.+++++|||++|++..
T Consensus 347 t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 347 SLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred EEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 567899999999987 5566677655332 13345689999998874
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.84 E-value=1.7e-06 Score=73.21 Aligned_cols=212 Identities=11% Similarity=0.063 Sum_probs=134.8
Q ss_pred ccccceeeccCCcc--eeEEEeecCCCEEEEeeC--CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 16 SMAMAAIFSDFGGK--INSLDFHRKDDLLVTASD--DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 16 ~~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~s~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
.++.+.++ .|.+. ..++.|++++.+.++.+. +++|++.|+.+++.+..+.....
T Consensus 8 ~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------------------- 65 (266)
T 2iwa_A 8 IVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------------------- 65 (266)
T ss_dssp EEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT---------------------
T ss_pred CceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC---------------------
Confidence 34455566 56654 579999998766666554 68999999999987654321100
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCE
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 171 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (338)
.....+++. .++..++.-.++.+.++|..+.+.+..+......-+.++++|..
T Consensus 66 --------------------------~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~ 118 (266)
T 2iwa_A 66 --------------------------YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKI 118 (266)
T ss_dssp --------------------------CCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSS
T ss_pred --------------------------cceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCE
Confidence 000122333 12333444567899999998888877776541222456667776
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCC---CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC---
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT---AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--- 245 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~--- 245 (338)
+.++..++.+.++|..+... .......... .....+.|. +++.++....++.|.++|..+++....+...+
T Consensus 119 l~vs~gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~ 195 (266)
T 2iwa_A 119 LYGSDGTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRK 195 (266)
T ss_dssp EEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHH
T ss_pred EEEECCCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 66666788999999776432 2222222111 135677777 66555555567899999999998877665431
Q ss_pred ------C--CCCCeeEEECCCCC-EEEEEcCCCcEEEEECCCC
Q 019603 246 ------S--PNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 246 ------~--~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~~ 279 (338)
. ......++|+|+++ +++++.....|++-++...
T Consensus 196 ~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 196 KLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 1 12457899999986 5566777888988888654
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.82 E-value=7.1e-07 Score=74.89 Aligned_cols=196 Identities=13% Similarity=0.144 Sum_probs=123.8
Q ss_pred ccccceeeccCCcce--eEEEeecCCCEEEEeeCCC--cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc
Q 019603 16 SMAMAAIFSDFGGKI--NSLDFHRKDDLLVTASDDD--SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN 91 (338)
Q Consensus 16 ~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~s~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
.|+-+.++ .|...- .+|.|+ ++.+..|+|.++ +|+.+|+++++.+..+..... .
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-------------~------- 87 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-------------Y------- 87 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------C-------
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------c-------
Confidence 35555666 666554 789998 677888888876 899999999987654321100 0
Q ss_pred CCCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEE-EEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCC
Q 019603 92 LDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 170 (338)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
.-..+++ +++.| +..-.++.+.++|.++.+.+..+...+ .-..+.+++.
T Consensus 88 ---------------------------FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~ 137 (262)
T 3nol_A 88 ---------------------------FGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQ 137 (262)
T ss_dssp ---------------------------CEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSS
T ss_pred ---------------------------ceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecCCC
Confidence 0011111 22333 333457899999999988888777644 2234456666
Q ss_pred EEEEEEcCCeEEEEeCCCCCCCCCeeEEec--CCC-CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC-
Q 019603 171 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVG--GDT-AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS- 246 (338)
Q Consensus 171 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~-~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~- 246 (338)
.+.....++.|.++|..+... ....... +.. ..++.+.|. +|+.++..-.++.|.++|..+++....+...+-
T Consensus 138 ~L~~SdGs~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~ 214 (262)
T 3nol_A 138 YLIMSDGTPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGIL 214 (262)
T ss_dssp CEEECCSSSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGG
T ss_pred EEEEECCCCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCc
Confidence 666655678899999776432 1222221 111 334566776 676555555688999999999998877665311
Q ss_pred ---------CCCCeeEEECCCCCEEEEEc
Q 019603 247 ---------PNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 247 ---------~~~~~~~~fs~~~~~l~sgs 266 (338)
....+.++|+|+++.|+..+
T Consensus 215 ~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 215 AEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp GGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 12447799999887776665
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=9.5e-07 Score=74.82 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=122.8
Q ss_pred cceEEEEEcCCCCEEEEEEC--CCeEEEEECCCcceeeeeeecCcc-EEEEcCCC-CEEEEEEcCCeEEEEeCCCCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGILRLRGRP-TVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGP 193 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~--D~~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~ 193 (338)
.....+.|++++..+++.+. +++|++.|+.+++....+.....+ ...+..++ .++.+...++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v-- 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN-- 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE--
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE--
Confidence 34688999998765566554 689999999999987777654432 12233334 4555666789999999875431
Q ss_pred CeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC--C-CCCeeEEECCCCCEEEEEcCCCc
Q 019603 194 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--P-NTNTEATFTPDGQYVVSGSGDGT 270 (338)
Q Consensus 194 ~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~-~~~~~~~fs~~~~~l~sgs~Dg~ 270 (338)
...+... ...- +.+++|++.++++..++.+.++|..+.+.......... + .....+.|. +|+..+....++.
T Consensus 99 ~~~i~~g--~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 99 IKNFTHQ--MKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEECC--SSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEECC--CCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 2222222 1111 23566888777777788999999988776554443211 1 134567777 7766666667889
Q ss_pred EEEEECCCCCeEeEeeCC-------------CCceEEEEEcCCCc-eEEeec
Q 019603 271 LHAWNINTRNEVACWNGN-------------IGVVACLKWAPRRA-MFVAAS 308 (338)
Q Consensus 271 i~vWd~~~~~~~~~~~~h-------------~~~v~~l~~~p~~~-~l~s~s 308 (338)
|.+-|..+++.+..+.-. ....+.|+|+|++. +++++.
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 999999999998888632 13568999999976 455543
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.79 E-value=8.1e-07 Score=77.54 Aligned_cols=259 Identities=12% Similarity=0.087 Sum_probs=150.9
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
...+.++...++|.+.+ ++.+ +..+|. +++.+..............+. ...+..++ .++.+..++..
T Consensus 59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t------~~~~l~~~d~~- 125 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTS------MDGHLYAINTD- 125 (330)
T ss_dssp GEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEEC------TTSEEEEECTT-
T ss_pred CCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEe------cCCEEEEEcCC-
Confidence 34456666666665444 4444 888886 555433222111111111221 33333322 23667788877
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEE
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLF 184 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~ 184 (338)
++....+..+...+.++...+++. ++.|+.++.|..+|.. ++....+..... ..+..++++.+++.. +.+..+
T Consensus 126 g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~ 200 (330)
T 3hxj_A 126 GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAI 200 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEE
T ss_pred CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEE
Confidence 666655555555566667766665 5567888999999988 665544443322 234566777755443 778888
Q ss_pred eCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEE
Q 019603 185 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 264 (338)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~s 264 (338)
| ..... ..........+.++...+++. +.+++.++.+..++. +++....+... ......+.+.+++ .|..
T Consensus 201 d-~~g~~----~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v 270 (330)
T 3hxj_A 201 N-PDGTE----KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYF 270 (330)
T ss_dssp C-TTSCE----EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEE
T ss_pred C-CCCcE----EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEE
Confidence 8 33211 111112223466667777765 666777788888874 45444444332 2223345566566 4556
Q ss_pred EcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec-ceEEEe
Q 019603 265 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFW 314 (338)
Q Consensus 265 gs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~~~~iw 314 (338)
++.+|.|+.+|. +++.+..+......+.++...+++++++.+. +.+.+.
T Consensus 271 ~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp ECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred ecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 778889999996 6777777766667788888888888777654 445544
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=1.2e-05 Score=77.58 Aligned_cols=266 Identities=12% Similarity=0.078 Sum_probs=159.3
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc----CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeec
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH----GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFK 114 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 114 (338)
+..++.++.|+.|..+|..+|+.+........ .+...-. .....++......-...++.+..+|..+|+.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~-v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR-VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE-EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE-EECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 45788888999999999999998776543211 0110000 112333332211001124789999999999887664
Q ss_pred CC---cc----------------------------ceEEEEEcCCCCEEEEEECCC-------------------eEEEE
Q 019603 115 GH---KE----------------------------RVISLCMSPVNDSFMSGSLDH-------------------SVRIW 144 (338)
Q Consensus 115 ~H---~~----------------------------~V~~l~~~~~~~~l~Sgs~D~-------------------~I~iW 144 (338)
.. .. ....++++|....++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21 10 112367888888888887766 49999
Q ss_pred ECCCcceeeeeeecC---------ccEE--EEcCCCC---EEEEEEcCCeEEEEeCCCCCCC------CC-eeEEecCCC
Q 019603 145 DLRVNACQGILRLRG---------RPTV--AFDQQGL---VFAVAMEAGAIKLFDSRSYDKG------PF-DTFLVGGDT 203 (338)
Q Consensus 145 d~~~~~~~~~~~~~~---------~~~~--~~~~~~~---~~~~~~~dg~i~i~d~~~~~~~------~~-~~~~~~~~~ 203 (338)
|.++++..-.++... .+.+ .+..+|. .++.+..+|.+.++|.++.+.. +. ....+....
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 999998876665421 1111 2223554 5778889999999997654311 00 000000000
Q ss_pred C-------------------------ceEEEEEcCCCCEEEEEe------------------------------------
Q 019603 204 A-------------------------EVCDIKFSNDGKSMLLTT------------------------------------ 222 (338)
Q Consensus 204 ~-------------------------~i~~v~~sp~~~~i~~~~------------------------------------ 222 (338)
. .-..++++|+...+++..
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 0 001256777766555421
Q ss_pred cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCce-EEEEEcCCC
Q 019603 223 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV-ACLKWAPRR 301 (338)
Q Consensus 223 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v-~~l~~~p~~ 301 (338)
.++.++-||..+++..-.+.... ......+...+.+++.++.||.+++||..+++.+..++...+.. .-+.+..++
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G 512 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ccceEEEEeCCCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECC
Confidence 12678899999998766555432 22233455578899999999999999999999998887553322 225555566
Q ss_pred c-eEEeec
Q 019603 302 A-MFVAAS 308 (338)
Q Consensus 302 ~-~l~s~s 308 (338)
+ +++.++
T Consensus 513 ~~yva~~~ 520 (668)
T 1kv9_A 513 RQYVAIMA 520 (668)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 6 444443
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.75 E-value=1.4e-06 Score=73.16 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=125.9
Q ss_pred EEEeec-CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc-EEEEcCCC-CEEEEEEcCCeEEEEe
Q 019603 109 ILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQG-LVFAVAMEAGAIKLFD 185 (338)
Q Consensus 109 ~~~~~~-~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~dg~i~i~d 185 (338)
.++++. .-......|.|+ ++..+.|.+.++.|+++|+++++....+ +.... ...+.+.+ .++.+...++.+.+||
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 444452 123456788887 3567789999999999999999887776 54432 22233333 4566667889999999
Q ss_pred CCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC---CCCeeEEECCCCCEE
Q 019603 186 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYV 262 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~fs~~~~~l 262 (338)
..+.+. ...+...++. ..+.++++.++.+..++.++++|..+.+........... ...+.+.|. +|+..
T Consensus 123 ~~Tl~~--~~ti~~~~eG-----wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 123 GMPPQR--ERTTRYSGEG-----WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp TTTTEE--EEEEECSSCC-----CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CCcCcE--EEEEeCCCce-----eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 876432 2223322221 123357888888777899999999888776655443222 133556666 77666
Q ss_pred EEEcCCCcEEEEECCCCCeEeEeeCC-------------CCceEEEEEcCCCc-eEEee
Q 019603 263 VSGSGDGTLHAWNINTRNEVACWNGN-------------IGVVACLKWAPRRA-MFVAA 307 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~~~~~~~~h-------------~~~v~~l~~~p~~~-~l~s~ 307 (338)
+..-.+..|.+-|..+++.+..+.-. ....+.|||+|++. ++++|
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 66656889999999999998887532 14668899999755 55544
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.73 E-value=3.1e-05 Score=67.62 Aligned_cols=237 Identities=11% Similarity=0.070 Sum_probs=140.6
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeec--------------------ccCeeeEEEeecCCeeEEec
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHK--------------------KHGADCVCFTHHPSSVICST 88 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 88 (338)
.-.+++|+++|++++++..++.|..||..+++... +... ......+++......++.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 34678899999988888889999999987655322 2110 01233444443223444432
Q ss_pred CccCCCCCceeEEEEccCCeEEEeec----C-CccceEEEEEcC-CCCEEEEEEC-----------------CCeEEEEE
Q 019603 89 KYNLDSTGESLRYLSMYDNRILRYFK----G-HKERVISLCMSP-VNDSFMSGSL-----------------DHSVRIWD 145 (338)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~~~----~-H~~~V~~l~~~~-~~~~l~Sgs~-----------------D~~I~iWd 145 (338)
. +..+..++..+++. ..+. + .......+.+.+ +++..++-.. ++.|..||
T Consensus 99 ~------~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 99 C------YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp T------TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred C------CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 1 13366666654432 2221 1 123578899999 8886665432 37789999
Q ss_pred CCCcceeeeee-ecCccEEEEcCCCCEEE-EEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec
Q 019603 146 LRVNACQGILR-LRGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 223 (338)
Q Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~ 223 (338)
...++...... .....-++++++|..+. +....+.|..|+...........+. . ... ...+.+.++|.++++...
T Consensus 172 ~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~-~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 172 PSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K-IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E-CSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e-CCC-CCCeEECCCCCEEEEecC
Confidence 87665432222 23334588999998554 4456689999987642212221221 1 122 667889999986666544
Q ss_pred ----------CCcEEEEEccCCeeEEEeeeCCC--CCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 224 ----------NNNIYVLDAYGGEKRCGFSLEPS--PNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 224 ----------d~~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
.+.|..++. .++....+..... ...++.+++ .++.++++...++.|.++++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 456888886 4665555544321 234566666 4666666766788899998763
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.69 E-value=3.8e-09 Score=94.79 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=78.1
Q ss_pred CCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCC-ce
Q 019603 128 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EV 206 (338)
Q Consensus 128 ~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~i 206 (338)
++..+++++.|+.|+.||.++++....+.........+..++.++++++.|+.+..||.++.+.. ... ..+.. .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~--w~~--~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL--TKL--PFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCS--EEC--SCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCcee--eee--eccCcccc
Confidence 56789999999999999999998876666522222233456667777789999999997654321 110 00100 00
Q ss_pred E-EEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEe
Q 019603 207 C-DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 285 (338)
Q Consensus 207 ~-~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~ 285 (338)
. ...+. ++..+++++.++.++.||..+|+....+.... ...++|++..|++++.|+.|+.||..+++.+-.+
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 0 00011 34457777888999999999887765443321 2356778899999999999999999998875554
Q ss_pred e
Q 019603 286 N 286 (338)
Q Consensus 286 ~ 286 (338)
.
T Consensus 157 ~ 157 (369)
T 2hz6_A 157 T 157 (369)
T ss_dssp E
T ss_pred e
Confidence 3
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.63 E-value=1.6e-05 Score=65.99 Aligned_cols=182 Identities=10% Similarity=0.056 Sum_probs=120.9
Q ss_pred cceEEEEEcCCCCEEEEEECCC--eEEEEECCCcceeeeeeecCcc-EEEEcCC-CCEEEEEEcCCeEEEEeCCCCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRP-TVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGP 193 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~--~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~ 193 (338)
..+..|.|++ +..+.|.+.+| .|+.+|+++++....+.+.... -..+... +.++.....++.+.+||.++.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~-- 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP-- 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE--
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE--
Confidence 5677899986 56677777764 9999999999988777665432 1222222 34556667889999999876432
Q ss_pred CeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCC---CCCeeEEECCCCCEEEEEcCCCc
Q 019603 194 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYVVSGSGDGT 270 (338)
Q Consensus 194 ~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~fs~~~~~l~sgs~Dg~ 270 (338)
...+...++ -. .+.++++.++++..++.+.++|..+.+.........+. ...+.+.+. +|+..+..-.+..
T Consensus 98 ~~ti~~~~~---Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 98 RARFRYPGE---GW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEECSSC---CC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEeCCCC---ce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence 223332222 12 23357777777777889999999888766655443221 233455554 6766666656779
Q ss_pred EEEEECCCCCeEeEeeCC-------------CCceEEEEEcCCCceEEeec
Q 019603 271 LHAWNINTRNEVACWNGN-------------IGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 271 i~vWd~~~~~~~~~~~~h-------------~~~v~~l~~~p~~~~l~s~s 308 (338)
|.+-|..+++.+..+.-. ....++|||+|++..|..++
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 999999999998887621 13668899999766555444
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.63 E-value=2.3e-06 Score=74.63 Aligned_cols=255 Identities=13% Similarity=0.090 Sum_probs=141.3
Q ss_pred eEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEE
Q 019603 31 NSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRIL 110 (338)
Q Consensus 31 ~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (338)
.+..+..+| .|..++.++.|..|| .+++.+.........+..+.. .....+. ..+.. +..++. +++..
T Consensus 23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g~l~------v~t~~-l~~~d~-~g~~~ 90 (330)
T 3hxj_A 23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDGTIY------FGSDK-VYAINP-DGTEK 90 (330)
T ss_dssp CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTTEEC------CSSCE-EEEECC-CGGGG
T ss_pred cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCCcEE------EecCc-EEEECC-CCcEE
Confidence 334454555 456677889999999 888765432221111111111 2111111 12223 666664 44433
Q ss_pred EeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 019603 111 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRS 188 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 188 (338)
..+...........+. +..++.++.++.|..+|.. ++.......... .....++++. +.+++.++.+..+|..
T Consensus 91 ~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~- 165 (330)
T 3hxj_A 91 WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD- 165 (330)
T ss_dssp GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-
T ss_pred EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-
Confidence 3333222222223333 5677888889999999987 665443333222 2245566666 4557778899999865
Q ss_pred CCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC
Q 019603 189 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D 268 (338)
... ...+. .....+..+.+.+++.. .+++ +.+..++ .+++....+. .....+..+.+.++|... .++.+
T Consensus 166 g~~--~~~~~--~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~--~~~~~~~~~~~~~~g~l~-v~t~~ 234 (330)
T 3hxj_A 166 GTE--KWRFK--TNDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNFY--AGYWTVTRPAISEDGTIY-VTSLD 234 (330)
T ss_dssp SCE--EEEEE--CSSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCEEEEEC--CSSCCCSCCEECTTSCEE-EEETT
T ss_pred CCE--eEEEe--cCCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEEc--cCCcceeceEECCCCeEE-EEcCC
Confidence 221 11121 12233455566667764 4444 8899999 5665544333 233457778888887654 45667
Q ss_pred CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecc-eEEEe
Q 019603 269 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS-VLSFW 314 (338)
Q Consensus 269 g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-~~~iw 314 (338)
+.|..+|. +++.+..+......+.++...+++.+.+.... .+..+
T Consensus 235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAI 280 (330)
T ss_dssp TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEE
T ss_pred CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEE
Confidence 88888874 56666666655555566777777776655432 44444
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.62 E-value=4.5e-06 Score=77.97 Aligned_cols=244 Identities=10% Similarity=0.046 Sum_probs=147.5
Q ss_pred cCCCEEEEeeC-CCcEEEEEcCCCeeEeEEeec-ccCeeeEEE-e-ecCCeeEEecCccC---------C---CCCceeE
Q 019603 37 RKDDLLVTASD-DDSVRLYDIVSAKLIKTTYHK-KHGADCVCF-T-HHPSSVICSTKYNL---------D---STGESLR 100 (338)
Q Consensus 37 ~~~~~l~s~s~-D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~---------~---~~~~~i~ 100 (338)
+||++|+.+.. +..|.+-|+.+.++.+.+... ......+++ + ++...+++++.+.. . ...+.+-
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48887777655 556999999999877744322 233445555 3 56666666532110 0 1124688
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCC--------------------------------------eEE
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDH--------------------------------------SVR 142 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~--------------------------------------~I~ 142 (338)
++|..+++....+.--. .-..++++|+++++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 89999888777664211 234567999999988777553 466
Q ss_pred EEECCC--cce-eeeeeec-CccEEEEcCCCCEEEEE-EcCCeEEEEeCCCCC------CCCCeeEEec-CCCCceEEEE
Q 019603 143 IWDLRV--NAC-QGILRLR-GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYD------KGPFDTFLVG-GDTAEVCDIK 210 (338)
Q Consensus 143 iWd~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~------~~~~~~~~~~-~~~~~i~~v~ 210 (338)
+-|.++ ++. ...+... ....+.++|||.+++++ ..+..+.++|..... ..+-...... .....-..+.
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 777766 332 3334332 22348899999966554 567899999987431 0000001111 1123467789
Q ss_pred EcCCCCEEEEEecCCcEEEEEccC----------CeeEEEeeeCC---CCCCCeeEEECCCCCEEEEE---cCCCcE---
Q 019603 211 FSNDGKSMLLTTTNNNIYVLDAYG----------GEKRCGFSLEP---SPNTNTEATFTPDGQYVVSG---SGDGTL--- 271 (338)
Q Consensus 211 ~sp~~~~i~~~~~d~~i~i~~~~~----------~~~~~~~~~~~---~~~~~~~~~fs~~~~~l~sg---s~Dg~i--- 271 (338)
|+|+|..+++.-.++.|.+|+... ...+.....+- |.......+++|||++|++. +.|+.+
T Consensus 338 F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~g 417 (595)
T 1fwx_A 338 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVG 417 (595)
T ss_dssp ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCC
T ss_pred ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCC
Confidence 999994444556689999999865 33333333321 11122345678999999986 345542
Q ss_pred -------EEEECCCCCe
Q 019603 272 -------HAWNINTRNE 281 (338)
Q Consensus 272 -------~vWd~~~~~~ 281 (338)
.++|+..++.
T Consensus 418 p~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 418 PLKPENDQLIDISGDKM 434 (595)
T ss_dssp SSCCEEEEEEECSSSSC
T ss_pred CCCCCcceEEEcCCCcE
Confidence 7889965553
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.61 E-value=5e-05 Score=65.80 Aligned_cols=224 Identities=9% Similarity=-0.004 Sum_probs=126.5
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
....+++|+++|+++++-..++.|..||...+ ... .+..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-------------------------------------~~~~--- 70 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-------------------------------------HATV--- 70 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-------------------------------------EEEC---
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-------------------------------------EEeC---
Confidence 45678999999987777667788887776532 110 0000
Q ss_pred eEEEeecCCccceEEEEEcCCCCEEEEEECC--CeEEEEECCCcceeeeeeecCc---cEEEEcCCCCEEEEEEcCCeEE
Q 019603 108 RILRYFKGHKERVISLCMSPVNDSFMSGSLD--HSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 108 ~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D--~~I~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dg~i~ 182 (338)
.....++++.++++.+++.... ..|..+|..+++.......... .-.+..+.+..+++....+.|.
T Consensus 71 ---------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~ 141 (306)
T 2p4o_A 71 ---------EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIW 141 (306)
T ss_dssp ---------SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred ---------CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEE
Confidence 0135677888888865554432 2466677666654332222111 1133344444444444578888
Q ss_pred EEeCCCCCCCCCeeE-------EecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccC-Cee--EEEeeeCCCCCCCe
Q 019603 183 LFDSRSYDKGPFDTF-------LVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYG-GEK--RCGFSLEPSPNTNT 251 (338)
Q Consensus 183 i~d~~~~~~~~~~~~-------~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~-~~~--~~~~~~~~~~~~~~ 251 (338)
.+|...... ..... ...+.-.....+ +|+++.++++. ..+.|+.++... +.. ...+... ....
T Consensus 142 ~~d~~~~~~-~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~ 215 (306)
T 2p4o_A 142 LIDVVQPSG-SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNID 215 (306)
T ss_dssp EEETTTTEE-EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCS
T ss_pred EEeCCCCcE-eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCC
Confidence 887542100 00000 000111223444 78887665554 467899999764 321 1111111 2356
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCCCCeEe--EeeCCCCceEEEEEc---CCCceEEeec
Q 019603 252 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWA---PRRAMFVAAS 308 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~--~~~~h~~~v~~l~~~---p~~~~l~s~s 308 (338)
.++++++|.++++....+.|.+++.. ++... .+.......++++|. |++..|..++
T Consensus 216 gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 216 DFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp SEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 68999999988887778899999975 55432 233233568999999 8866555443
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.61 E-value=0.00058 Score=67.26 Aligned_cols=269 Identities=14% Similarity=0.176 Sum_probs=160.1
Q ss_pred eeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEe-ecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe
Q 019603 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTY-HKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR 108 (338)
Q Consensus 30 V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 108 (338)
|.++...++|.+.+ +..++.+..||..+++...... .....+..+.....+ .+..++. ++.+..++..+++
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lwigt~------~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT-RIWVATE------GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT-EEEEEEB------SSCEEEEETTTTE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC-CEEEEEC------CCCeEEEeCCCCe
Confidence 88888888887665 5555568899987766432111 112233333333222 2322221 2347778877665
Q ss_pred EEEeecC-------CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee---------cCccEEEEcCCCCEE
Q 019603 109 ILRYFKG-------HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---------RGRPTVAFDQQGLVF 172 (338)
Q Consensus 109 ~~~~~~~-------H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 172 (338)
....... ....|.++...+++.. ..|+.+ .|.+||..+++....... .....+..+++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l- 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM- 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-
Confidence 5443222 2467999998887764 445555 689999877654322111 11123556777764
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEec----C-CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC---
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVG----G-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE--- 244 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~-~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~--- 244 (338)
-+|+.++-+..++..... +..+... + ....|.++...++|. +.+++.++.+..++..++.... +...
T Consensus 324 Wigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~-~~~~~~~ 398 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNR---FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTS-YTLQEDE 398 (795)
T ss_dssp EEEESSSCEEEECGGGGS---SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEE-ECCC---
T ss_pred EEEECCCCeEEeCCCccc---ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEE-EecCCCC
Confidence 456666778888754321 1111100 0 134588888888776 5567777789999877665432 2111
Q ss_pred ----CCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee-----CCCCceEEEEEcCCCceEEeecceEEEee
Q 019603 245 ----PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-----GNIGVVACLKWAPRRAMFVAASSVLSFWI 315 (338)
Q Consensus 245 ----~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~l~s~s~~~~iw~ 315 (338)
.....+.++...++|..|..|+.++-|.++|..+++.. .+. .+...|.++...+++.+.+.....+.++.
T Consensus 399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~ 477 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFN 477 (795)
T ss_dssp ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEE
T ss_pred cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEe
Confidence 11246778888888885566777777999999876543 332 23467999999999987776654454443
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.60 E-value=7.4e-05 Score=70.73 Aligned_cols=263 Identities=11% Similarity=0.039 Sum_probs=154.1
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc----CeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeec
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH----GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFK 114 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 114 (338)
+..++.++.|+.+..+|..+|+.+........ .+...-. .....++......-...++.+..+|..+++.+..+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~-v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPF-VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE-EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCE-EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 56778888899999999999998765443221 1111000 123334433210000124789999999998876654
Q ss_pred CCccc-------------------------------------e-EEEEEcCCCCEEEEEEC------------C----Ce
Q 019603 115 GHKER-------------------------------------V-ISLCMSPVNDSFMSGSL------------D----HS 140 (338)
Q Consensus 115 ~H~~~-------------------------------------V-~~l~~~~~~~~l~Sgs~------------D----~~ 140 (338)
.-... + ..+++.+....++.++. | +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 32110 0 12456666566555442 2 36
Q ss_pred EEEEECCCcceeeeeeecC----------ccEE-EEcCCCC---EEEEEEcCCeEEEEeCCCCCCCCCeeEEecC-----
Q 019603 141 VRIWDLRVNACQGILRLRG----------RPTV-AFDQQGL---VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG----- 201 (338)
Q Consensus 141 I~iWd~~~~~~~~~~~~~~----------~~~~-~~~~~~~---~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----- 201 (338)
|..+|.++++....++... .+.+ ....+|. .++.+..+|.+..+|.++.+. ...+....
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL--IVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCCSE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE--EeeecccCCcccc
Confidence 9999999998876655421 1222 2224663 566788889999999765431 11111110
Q ss_pred -----CC-Cce--------------------------EEEEEcCCCCEEEEEec--------------------------
Q 019603 202 -----DT-AEV--------------------------CDIKFSNDGKSMLLTTT-------------------------- 223 (338)
Q Consensus 202 -----~~-~~i--------------------------~~v~~sp~~~~i~~~~~-------------------------- 223 (338)
.+ ..+ ..++|+|+...+++...
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 00 000 23567887776666542
Q ss_pred -----------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCc-
Q 019603 224 -----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV- 291 (338)
Q Consensus 224 -----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~- 291 (338)
++.++.+|..+++....+..... +....+...+..++.++.||.|++||..+++.+-.++...+.
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 36788899888887665544321 222223335677888999999999999999999888643221
Q ss_pred eEEEEEcCCCceEEee
Q 019603 292 VACLKWAPRRAMFVAA 307 (338)
Q Consensus 292 v~~l~~~p~~~~l~s~ 307 (338)
-.-+.+.++++++++.
T Consensus 509 ~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIGS 524 (571)
T ss_dssp SCCEEEEETTEEEEEE
T ss_pred eeeEEEEECCEEEEEE
Confidence 1224566777766554
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.58 E-value=1.7e-05 Score=65.92 Aligned_cols=196 Identities=11% Similarity=0.161 Sum_probs=122.6
Q ss_pred cccceeeccCCcc--eeEEEeecCCCEEEEeeCCC--cEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC
Q 019603 17 MAMAAIFSDFGGK--INSLDFHRKDDLLVTASDDD--SVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL 92 (338)
Q Consensus 17 ~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~s~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
|+-+..+ .|... ..+|.|++ +.+..|.+.++ +|+.+|+.+++.+........ .+
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------------~f------- 66 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------------YF------- 66 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------------CC-------
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------------cc-------
Confidence 4455566 67655 55899987 67777777764 899999999987765422110 00
Q ss_pred CCCCceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEEcCCCCEE
Q 019603 93 DSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF 172 (338)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (338)
-..+++. .++..+..-.++.+.+||.++.+.+..+...+. -+.+.+++..+
T Consensus 67 ---------------------------geGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~dg~~L 117 (243)
T 3mbr_X 67 ---------------------------GAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALTSDDSHL 117 (243)
T ss_dssp ---------------------------EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEEECSSCE
T ss_pred ---------------------------eeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEeeCCCEE
Confidence 0001111 122333445678999999998888887776442 24555667666
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCC---CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC----
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT---AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP---- 245 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~---- 245 (338)
.++..++.|.++|..+... .....+..+. ..++.+.+. +|+.++..-..+.|.++|..+++....+.+.+
T Consensus 118 ~vSdgs~~l~~iDp~t~~~--~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~ 194 (243)
T 3mbr_X 118 YMSDGTAVIRKLDPDTLQQ--VGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD 194 (243)
T ss_dssp EEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT
T ss_pred EEECCCCeEEEEeCCCCeE--EEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc
Confidence 6666788999999776432 1122221111 235566665 56655555568899999999999887665431
Q ss_pred -------CCCCCeeEEECCCCCEEEEEc
Q 019603 246 -------SPNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 246 -------~~~~~~~~~fs~~~~~l~sgs 266 (338)
.....+.++++|+++.|+..+
T Consensus 195 ~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 195 ADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 112447799999877665554
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.58 E-value=8.9e-05 Score=70.41 Aligned_cols=267 Identities=10% Similarity=0.055 Sum_probs=152.9
Q ss_pred EEeecCCCE----EEEeeCCCcEEEEEcCCCeeEeEEeeccc----CeeeEEEeecCCeeEEecCccCCCCCceeEEEEc
Q 019603 33 LDFHRKDDL----LVTASDDDSVRLYDIVSAKLIKTTYHKKH----GADCVCFTHHPSSVICSTKYNLDSTGESLRYLSM 104 (338)
Q Consensus 33 l~~s~~~~~----l~s~s~D~~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (338)
+.++|.+.. |+.++.|+.+..+|..+|+.+........ .+...-. .....+++.....-...++.++-+|.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~-v~~g~V~vg~~g~e~g~~g~v~A~D~ 189 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPY-VVKDKVIIGSSGAELGVRGYLTAYDV 189 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE-EETTEEEECCBCGGGTCCCEEEEEET
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCE-EECCEEEEEecccccCCCCeEEEEEC
Confidence 344444444 88888999999999999998765433211 1111000 01233333221000012478999999
Q ss_pred cCCeEEEeecCCccc-------------------------------------eE-EEEEcCCCCEEEEEECC--------
Q 019603 105 YDNRILRYFKGHKER-------------------------------------VI-SLCMSPVNDSFMSGSLD-------- 138 (338)
Q Consensus 105 ~~~~~~~~~~~H~~~-------------------------------------V~-~l~~~~~~~~l~Sgs~D-------- 138 (338)
.+++.+..+...... +. ..++.+....++.++.+
T Consensus 190 ~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~ 269 (599)
T 1w6s_A 190 KTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM 269 (599)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcc
Confidence 999887665432110 11 24556666676666554
Q ss_pred --------CeEEEEECCCcceeeeeeecCc----------cEEE-Ec-CCC---CEEEEEEcCCeEEEEeCCCCCCCCCe
Q 019603 139 --------HSVRIWDLRVNACQGILRLRGR----------PTVA-FD-QQG---LVFAVAMEAGAIKLFDSRSYDKGPFD 195 (338)
Q Consensus 139 --------~~I~iWd~~~~~~~~~~~~~~~----------~~~~-~~-~~~---~~~~~~~~dg~i~i~d~~~~~~~~~~ 195 (338)
..|..+|.++++..-.++.... +.+. .. .+| ..++.+..+|.+..+|.++.+. +.
T Consensus 270 r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--lw 347 (599)
T 1w6s_A 270 RPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL--VS 347 (599)
T ss_dssp SCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE--EE
T ss_pred cCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE--ee
Confidence 4899999999988766654321 2221 21 567 4667788999999999765431 11
Q ss_pred eEEecC----------CCC-c--------------------------eEEEEEcCCCCEEEEEe----------------
Q 019603 196 TFLVGG----------DTA-E--------------------------VCDIKFSNDGKSMLLTT---------------- 222 (338)
Q Consensus 196 ~~~~~~----------~~~-~--------------------------i~~v~~sp~~~~i~~~~---------------- 222 (338)
...... ... . -..++|+|+...+++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 110000 000 0 01345666655544421
Q ss_pred -----------------------cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 223 -----------------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 223 -----------------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
..+.+.-||+.+++.+-...... + ...-.+...+..++.++.||.++.||.+++
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~--~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-A--VWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-C--CCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-C--ccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 23567888888887665554321 1 111112335778888999999999999999
Q ss_pred CeEeEeeCCCCce-EEEEEcCCCceEE
Q 019603 280 NEVACWNGNIGVV-ACLKWAPRRAMFV 305 (338)
Q Consensus 280 ~~~~~~~~h~~~v-~~l~~~p~~~~l~ 305 (338)
+.+-.++-..+.+ .-+.|..++++++
T Consensus 505 ~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 505 DLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 9988886443322 2366767776433
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.55 E-value=0.00014 Score=69.03 Aligned_cols=263 Identities=13% Similarity=0.118 Sum_probs=150.4
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeeccc----Ceee-EEEeec---CC-eeEEecCccCCCCCceeEEEEccCCeE
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKH----GADC-VCFTHH---PS-SVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~----~~~~-~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
+..++.++.|+.|..+|..+|+.+........ .+.. -.+... +. .+++.....-....+.+.-+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45678888999999999999998765433221 1110 011111 01 233322100001246788888888877
Q ss_pred EEeecCCccc----------------------------------------e-EEEEEcCCCCEEEEEEC-----------
Q 019603 110 LRYFKGHKER----------------------------------------V-ISLCMSPVNDSFMSGSL----------- 137 (338)
Q Consensus 110 ~~~~~~H~~~----------------------------------------V-~~l~~~~~~~~l~Sgs~----------- 137 (338)
+.....-... + ...+++|....++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 6544221000 0 12456666666665542
Q ss_pred ---------C----CeEEEEECCCcceeeeeeecC----------ccEEE-Ec-CCCC---EEEEEEcCCeEEEEeCCCC
Q 019603 138 ---------D----HSVRIWDLRVNACQGILRLRG----------RPTVA-FD-QQGL---VFAVAMEAGAIKLFDSRSY 189 (338)
Q Consensus 138 ---------D----~~I~iWd~~~~~~~~~~~~~~----------~~~~~-~~-~~~~---~~~~~~~dg~i~i~d~~~~ 189 (338)
| +.|..+|.++++..-.++... .+.+. .. .+|. .++.++.+|.+..+|.++.
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 3 689999999998876665421 12222 21 4674 6778889999999997654
Q ss_pred CCCCCeeEEecC--------------------------------CCCc-----------eEEEEEcCCCCEEEEEec---
Q 019603 190 DKGPFDTFLVGG--------------------------------DTAE-----------VCDIKFSNDGKSMLLTTT--- 223 (338)
Q Consensus 190 ~~~~~~~~~~~~--------------------------------~~~~-----------i~~v~~sp~~~~i~~~~~--- 223 (338)
+. +..+.... .... -..++++|+...+++...
T Consensus 357 ~~--lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 357 KL--QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp CE--EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CE--ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 31 10000000 0000 013456776555544332
Q ss_pred ------------------------------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEE
Q 019603 224 ------------------------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 273 (338)
Q Consensus 224 ------------------------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~v 273 (338)
++.+.-||..+++..-.+..... ...-.....+.+++.|+.||.++.
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEE
Confidence 46788899988887655544321 111112234778888999999999
Q ss_pred EECCCCCeEeEeeCCCCceE-EEEEcCCCceEEe
Q 019603 274 WNINTRNEVACWNGNIGVVA-CLKWAPRRAMFVA 306 (338)
Q Consensus 274 Wd~~~~~~~~~~~~h~~~v~-~l~~~p~~~~l~s 306 (338)
||.++++.+-.++...+... -+.|..+++++++
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 99999999988876543332 2777778774444
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.53 E-value=0.00044 Score=68.12 Aligned_cols=270 Identities=11% Similarity=0.095 Sum_probs=159.7
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeec-------ccCeeeEEEeecCCeeEEecCccCCCCCcee
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHK-------KHGADCVCFTHHPSSVICSTKYNLDSTGESL 99 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (338)
...|.++...++|.+.+.. .+ .|.+||..+++........ ...+..+.....+...+ ++ .++.+
T Consensus 262 ~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt------~~~Gl 332 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GT------YFGGL 332 (795)
T ss_dssp CSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EE------SSSCE
T ss_pred CCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EE------CCCCe
Confidence 3569999999888876644 44 6899998877643321111 12233333333332222 21 12456
Q ss_pred EEEEccCCeEEEeec-----C-CccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee--------cCc--cEE
Q 019603 100 RYLSMYDNRILRYFK-----G-HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL--------RGR--PTV 163 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~-----~-H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~--------~~~--~~~ 163 (338)
..++..+........ + ....|.++...+++. |..|+.++-|..||..+++....... ... ..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 411 (795)
T 4a2l_A 333 NYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV 411 (795)
T ss_dssp EEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred EEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence 666655443222111 1 245699998887765 56688888899999877654322111 111 234
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEec---CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEE
Q 019603 164 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 240 (338)
Q Consensus 164 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~ 240 (338)
..+++|..+.+|+.++-+..+|.++.. +..+... .....|.++...++|... +++. +.+.+++..+++....
T Consensus 412 ~~d~~g~~lWigt~~~Gl~~~d~~~~~---~~~~~~~~~~l~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 412 YVDEKKSLVYIGTHAGGLSILHRNSGQ---VENFNQRNSQLVNENVYAILPDGEGNLW-LGTL-SALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEETTTTEEEEEETTTEEEEEETTTCC---EEEECTTTSCCSCSCEEEEEECSSSCEE-EEES-SCEEEEETTTTEEEEC
T ss_pred EEcCCCCEEEEEeCcCceeEEeCCCCc---EEEeecCCCCcCCCeeEEEEECCCCCEE-EEec-CceeEEeCCCCeEEEc
Confidence 556777756677777788889866432 1111100 123468888888888744 4444 6788999877654332
Q ss_pred eee----CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee-------CCCCceEEEEEcCCCceEEeecc
Q 019603 241 FSL----EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------GNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 241 ~~~----~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
... ......+.++...++|...+... +-|.+||..+++. .+. .....|.+|...+++.+.+++..
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~ 562 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE 562 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC
Confidence 111 11224678888999998776554 4588899876654 332 23457999999999997776654
Q ss_pred eEEEee
Q 019603 310 VLSFWI 315 (338)
Q Consensus 310 ~~~iw~ 315 (338)
.+..+.
T Consensus 563 Gl~~~d 568 (795)
T 4a2l_A 563 GFYCFN 568 (795)
T ss_dssp CEEEEE
T ss_pred CceeEC
Confidence 444443
No 255
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=1.6e-05 Score=76.70 Aligned_cols=272 Identities=9% Similarity=0.045 Sum_probs=141.6
Q ss_pred EEEeec-CCCEEEEeeCCC-----------cEEEEEcCCCeeEeEEee-cccC--eeeEEEeecCCeeEEecCccCCCCC
Q 019603 32 SLDFHR-KDDLLVTASDDD-----------SVRLYDIVSAKLIKTTYH-KKHG--ADCVCFTHHPSSVICSTKYNLDSTG 96 (338)
Q Consensus 32 ~l~~s~-~~~~l~s~s~D~-----------~i~iWd~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
++++.+ +|++++.||.+. .+.+||+.+++....... .... ....++..++ .++..... .+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~----~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGN----DA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSS----ST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCC----CC
Confidence 566777 888888888654 588999988764321111 1111 1123333333 33332221 12
Q ss_pred ceeEEEEccCCeEEEeecCCccce-EEEEEcCCCCEEEEEE-CC-----CeEEEEECCCcceeee-----eeec-CccEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERV-ISLCMSPVNDSFMSGS-LD-----HSVRIWDLRVNACQGI-----LRLR-GRPTV 163 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V-~~l~~~~~~~~l~Sgs-~D-----~~I~iWd~~~~~~~~~-----~~~~-~~~~~ 163 (338)
..+.+||..+++....-.-+..+- .++.+.++++.++.|| .+ ..+.+||..+++-... ..+. .....
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 479999998776544322222221 2345557899999998 45 6799999987653211 0000 00001
Q ss_pred EEcCCCCEEEEEEcCC---------eEEEEeCCCCCCCC-CeeEEe----cCCCCceEEEEEcC-CCCEEEEEecCC---
Q 019603 164 AFDQQGLVFAVAMEAG---------AIKLFDSRSYDKGP-FDTFLV----GGDTAEVCDIKFSN-DGKSMLLTTTNN--- 225 (338)
Q Consensus 164 ~~~~~~~~~~~~~~dg---------~i~i~d~~~~~~~~-~~~~~~----~~~~~~i~~v~~sp-~~~~i~~~~~d~--- 225 (338)
.+..++..++.+..+| .+..||........ ...... ......-.++.|.. +++.+++++.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 1123444455554443 45667765422100 000000 00011233444543 566677776532
Q ss_pred --------cEEEEEccCCeeEEEe--eeCCCCCCCeeEEECCCCCEEEEEcCC-----------CcEEEEECCCCC--eE
Q 019603 226 --------NIYVLDAYGGEKRCGF--SLEPSPNTNTEATFTPDGQYVVSGSGD-----------GTLHAWNINTRN--EV 282 (338)
Q Consensus 226 --------~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~fs~~~~~l~sgs~D-----------g~i~vWd~~~~~--~~ 282 (338)
.+.+||..++...... .+. .......++..|+|+.++.||.+ ..+.+||..+.+ .+
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 5677776665543322 111 11112345677899999999865 468999987643 22
Q ss_pred eEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 283 ACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 283 ~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
..+........+..+.|++++++.|+.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 222222223344556799999999873
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.47 E-value=5e-05 Score=66.25 Aligned_cols=182 Identities=9% Similarity=0.074 Sum_probs=110.7
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee----------------------cCccEEEEcC-CCCEEEEE
Q 019603 119 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL----------------------RGRPTVAFDQ-QGLVFAVA 175 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~----------------------~~~~~~~~~~-~~~~~~~~ 175 (338)
...+++++++++.++++..++.|..||...++.. .+.. .....+++++ ++.++ ++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EE
Confidence 3456788998887888889999999998765432 2211 1112367787 56544 44
Q ss_pred EcCCeEEEEeCCCCCCCCCeeEE--ecC-CCCceEEEEEcC-CCCEEEEEec-----------------CCcEEEEEccC
Q 019603 176 MEAGAIKLFDSRSYDKGPFDTFL--VGG-DTAEVCDIKFSN-DGKSMLLTTT-----------------NNNIYVLDAYG 234 (338)
Q Consensus 176 ~~dg~i~i~d~~~~~~~~~~~~~--~~~-~~~~i~~v~~sp-~~~~i~~~~~-----------------d~~i~i~~~~~ 234 (338)
...+.+..+|..... ...+. ..+ .......+.+.| +|..+++... .+.++.++..+
T Consensus 98 d~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGH---ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp ETTTEEEEECTTCEE---CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred ECCCCEEEEeCCCCE---EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 444557777754321 11111 111 112467789999 8876665432 25688888766
Q ss_pred CeeEEEeeeCCCCCCCeeEEECCCCCEEEE-EcCCCcEEEEECCCCC--eEeEeeCCCCceEEEEEcCCCceEEeecc
Q 019603 235 GEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GSGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRRAMFVAASS 309 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~fs~~~~~l~s-gs~Dg~i~vWd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 309 (338)
++........ .....++|+|+|++|+. -..++.|+++++.... ....+....+ ...+++.+++.++++...
T Consensus 175 ~~~~~~~~~~---~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 175 KETTLLLKEL---HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TEEEEEEEEE---SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred CEEEEeccCC---ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 6543222211 23456899999986554 4667899999987421 1222222234 788999999987777543
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.45 E-value=8.3e-05 Score=71.79 Aligned_cols=268 Identities=14% Similarity=0.106 Sum_probs=152.3
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCee-----e----EEEeecCCeeEEecCccCCCCCceeEEEEccCCeE
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGAD-----C----VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI 109 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (338)
+..|+.++.++.|..+|..+|+.+........... + -........++.. ..++.+..+|..+|+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~------~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVG------TLDGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEE------CTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEE------cCCCEEEEEECCCCCE
Confidence 56777788899999999999998876543221100 0 0001122333332 2347889999999988
Q ss_pred EEeecCCc-cceEEEEEcC--CCCEEEEEEC------CCeEEEEECCCcceeeeeeecC-c-------------------
Q 019603 110 LRYFKGHK-ERVISLCMSP--VNDSFMSGSL------DHSVRIWDLRVNACQGILRLRG-R------------------- 160 (338)
Q Consensus 110 ~~~~~~H~-~~V~~l~~~~--~~~~l~Sgs~------D~~I~iWd~~~~~~~~~~~~~~-~------------------- 160 (338)
+..+.... .....+..+| .+..++.++. ++.|..+|.++++....+.... .
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 77665321 0000011111 1334444432 6899999999998866554210 0
Q ss_pred -------------cEEEEcCCCCEEEEEEcCCe-------------------EEEEeCCCCCCCCCeeEEecCCC-----
Q 019603 161 -------------PTVAFDQQGLVFAVAMEAGA-------------------IKLFDSRSYDKGPFDTFLVGGDT----- 203 (338)
Q Consensus 161 -------------~~~~~~~~~~~~~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~~----- 203 (338)
...+++++...+.++..++. |..+|.++.+. ...+....+.
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~--~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHYQVTPGDSWDFT 297 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce--eeEeecCCCcccccc
Confidence 12577887777777776653 77888766432 1222222111
Q ss_pred --CceEEEEEcCCCC---EEEEEecCCcEEEEEccCCeeEEEeeeCCCC---------C---------------------
Q 019603 204 --AEVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---------N--------------------- 248 (338)
Q Consensus 204 --~~i~~v~~sp~~~---~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---------~--------------------- 248 (338)
.......+..+|+ .++.++.++.++++|..+|+.+...+....+ .
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 2222223333565 5778888999999999999876433322100 0
Q ss_pred ----CCeeEEECCCCCEEEEE------------------------------------cCCCcEEEEECCCCCeEeEeeCC
Q 019603 249 ----TNTEATFTPDGQYVVSG------------------------------------SGDGTLHAWNINTRNEVACWNGN 288 (338)
Q Consensus 249 ----~~~~~~fs~~~~~l~sg------------------------------------s~Dg~i~vWd~~~~~~~~~~~~h 288 (338)
.-..++|+|+...++.. ..+|.|+.||..+++.+-.++.+
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 00126788877766541 13488999999999887665533
Q ss_pred CCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 289 IGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 289 ~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
. ......+...+..++.++ +.+.+|.
T Consensus 458 ~-~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 458 T-HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp S-SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred C-CCcCceeEeCCCEEEEECCcccchhhh
Confidence 2 233334444555566555 3444443
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.41 E-value=2.8e-05 Score=65.20 Aligned_cols=188 Identities=12% Similarity=0.103 Sum_probs=121.1
Q ss_pred eeeccCCcc--eeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 21 AIFSDFGGK--INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 21 ~~~~~h~~~--V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
.++ .|... ..+|.|+ ++.+.++.+.++.|+.+|+++++.+..+ .... ....-+...+..++..+ ..++.
T Consensus 47 ~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-~FgeGit~~g~~Ly~lt-----w~~~~ 117 (268)
T 3nok_A 47 REY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-IFAEGLASDGERLYQLT-----WTEGL 117 (268)
T ss_dssp EEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-CCEEEEEECSSCEEEEE-----SSSCE
T ss_pred EEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-cceeEEEEeCCEEEEEE-----ccCCE
Confidence 444 56544 3689997 4678888999999999999999987776 3221 11111233445554432 22478
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecC--cc-----EEEEcCCCCE
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RP-----TVAFDQQGLV 171 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~--~~-----~~~~~~~~~~ 171 (338)
+.++|..+.+.+.++.-- ..=..++ ++++.|+.+..+++|.++|..+.+....+.... .+ .+.+. +|.+
T Consensus 118 v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 999999999998888642 2223344 567766655668999999999888776665422 11 13333 6776
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEec-----------CCCCceEEEEEcCCCCEEEEEec
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVG-----------GDTAEVCDIKFSNDGKSMLLTTT 223 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~~~~i~~v~~sp~~~~i~~~~~ 223 (338)
++....++.|.+.|.++... ...+... ......+.++|+|+++.+++.+.
T Consensus 194 yanvw~s~~I~vIDp~TG~V--~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTV--VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEETTCSEEEEECTTTCBE--EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCeEEEEeCCCCcE--EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 66666788999999776432 1111111 11235688999998877776664
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.37 E-value=5.8e-05 Score=73.94 Aligned_cols=197 Identities=8% Similarity=0.054 Sum_probs=106.4
Q ss_pred CCcc-ceEEEEEc-CCCCEEEEE-ECC----CeEEEEECCCc-ceee-eeeecCccEEEEcCCCCEEEEEEcC-----Ce
Q 019603 115 GHKE-RVISLCMS-PVNDSFMSG-SLD----HSVRIWDLRVN-ACQG-ILRLRGRPTVAFDQQGLVFAVAMEA-----GA 180 (338)
Q Consensus 115 ~H~~-~V~~l~~~-~~~~~l~Sg-s~D----~~I~iWd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d-----g~ 180 (338)
+|.- .+....|+ |||++|+-+ +.+ .+|+++|+.++ +... .+.. ....+.|+|+|..|+....+ ..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-ECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-ceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 3443 57788999 999987733 222 35999999887 6321 1211 12347899999877666554 24
Q ss_pred EEEEeCCCCCCCCCeeEEec-CCCCceEEEEEcCCCCEEEEEecC---CcEEEEEccCCe--e--EEEeeeCCCCCCCee
Q 019603 181 IKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGE--K--RCGFSLEPSPNTNTE 252 (338)
Q Consensus 181 i~i~d~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~i~~~~~d---~~i~i~~~~~~~--~--~~~~~~~~~~~~~~~ 252 (338)
|..+++.+... ....+.. ........+.|+|||++|+..+.. ..++++++.++. . .. + ..........
T Consensus 249 v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~-l-~~~~~~~~~s 324 (751)
T 2xe4_A 249 VWRHVMGKLQS--EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI-V-RPREKGVRYD 324 (751)
T ss_dssp EEEEETTSCGG--GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE-S-SCCCTTCCEE
T ss_pred EEEEECCCCch--hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE-e-ecCCCCceEE
Confidence 55666544221 1112211 223345678999999998877643 468888887652 2 11 1 1122223334
Q ss_pred EEECCCCCEEEEEcCC----CcEEEEECCCCCeEeE-eeCCCC--ceEEEEEcCCCceEE-eec--ceEEEeeeCC
Q 019603 253 ATFTPDGQYVVSGSGD----GTLHAWNINTRNEVAC-WNGNIG--VVACLKWAPRRAMFV-AAS--SVLSFWIPNP 318 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~D----g~i~vWd~~~~~~~~~-~~~h~~--~v~~l~~~p~~~~l~-s~s--~~~~iw~~~~ 318 (338)
+.|+..+.+++....+ ..|.++++.++..... +-.|.. .+..+.+. +..|+ +.. +..+||..+.
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 4444334444444433 3677778765322222 323333 44555554 44444 332 3456666553
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.28 E-value=0.00095 Score=63.09 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=108.3
Q ss_pred CCEEEEeeC-CCcEEEEEc-CCCeeEeEEeecccC-ee---e-----EEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 39 DDLLVTASD-DDSVRLYDI-VSAKLIKTTYHKKHG-AD---C-----VCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 39 ~~~l~s~s~-D~~i~iWd~-~~~~~~~~~~~~~~~-~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
+..|+.++. ++.|..+|. .+|+.+......... .. + -........++..+ .++.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~------~dg~l~alD~~tG 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ------ANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC------TTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEe------CCCEEEEEECCCC
Confidence 456666777 899999999 999987665432210 00 0 00111233344332 2467888999899
Q ss_pred eEEEeec--CCcc--ceEEEEEcC--CCCEEEEEEC------CCeEEEEECCCcceeeeeeecCc---------------
Q 019603 108 RILRYFK--GHKE--RVISLCMSP--VNDSFMSGSL------DHSVRIWDLRVNACQGILRLRGR--------------- 160 (338)
Q Consensus 108 ~~~~~~~--~H~~--~V~~l~~~~--~~~~l~Sgs~------D~~I~iWd~~~~~~~~~~~~~~~--------------- 160 (338)
+.+..+. .+.. .+. -+| .+..++.++. |+.|..+|.++++.+..+.....
T Consensus 136 ~~~W~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 136 KINWEVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp CEEEEEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEEecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 8876543 2211 121 111 1344555544 79999999999987655543211
Q ss_pred -------------------------cEEEEcCCCCEEEEEEcC----------------CeEEEEeCCCCCCCCCeeEEe
Q 019603 161 -------------------------PTVAFDQQGLVFAVAMEA----------------GAIKLFDSRSYDKGPFDTFLV 199 (338)
Q Consensus 161 -------------------------~~~~~~~~~~~~~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~ 199 (338)
...+++++...+..+..+ +.+..+|.++.+. ...+..
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~--~W~~~~ 290 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA--KWGYQK 290 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE--EEEEES
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE--EEEecC
Confidence 014556655555555432 2477778765432 122222
Q ss_pred cCCC-------CceEEEEEcCCCC---EEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 200 GGDT-------AEVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 200 ~~~~-------~~i~~v~~sp~~~---~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
..+. ....-+...++|+ .++.++.++.++.+|..+|+.+..++.
T Consensus 291 ~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 291 TPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp STTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 2111 1111123334674 466677889999999999987765544
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.0045 Score=60.76 Aligned_cols=265 Identities=8% Similarity=0.051 Sum_probs=148.5
Q ss_pred cceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeec-------ccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 28 GKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHK-------KHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
..|.++...++|.+.+.. .+ .+.+||..+++........ ...+.++....++ .+..++. ++.+.
T Consensus 211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~------~~Gl~ 281 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATE------LNGIM 281 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEES------SSCEE
T ss_pred CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeC------CCCeE
Confidence 568888888888876654 34 6899998877643221111 1123333322222 2222221 13466
Q ss_pred EEEccCCeEEEeec--------------CCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee---------e
Q 019603 101 YLSMYDNRILRYFK--------------GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR---------L 157 (338)
Q Consensus 101 ~~~~~~~~~~~~~~--------------~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~---------~ 157 (338)
+++..++....... -....|.++...+++. |..|+.++-|..++...+....... +
T Consensus 282 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l 360 (781)
T 3v9f_A 282 ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSL 360 (781)
T ss_dssp EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCC
T ss_pred EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCC
Confidence 67765544322111 1346799998887764 6678888889999987654322111 0
Q ss_pred cCc--cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCC
Q 019603 158 RGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 235 (338)
Q Consensus 158 ~~~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~ 235 (338)
... ..+..+++|.+ -+|+.++-+..+|........+. .........|.++...+++. +.+++.++.+..++..++
T Consensus 361 ~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 361 SNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNK-ENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLK 437 (781)
T ss_dssp SSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSC
T ss_pred CCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEcc-CCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCC
Confidence 111 23445566664 45665666778885432110000 00011235688888877776 455666678888887666
Q ss_pred eeEEEeee-CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC-----CCceEEEEEcCCCceEEeec
Q 019603 236 EKRCGFSL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-----IGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 236 ~~~~~~~~-~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~l~s~s 308 (338)
+... +.. ......+.++...++|.+.+.. . +-|.++|..+++........ ...|.++...+++.+.++..
T Consensus 438 ~~~~-~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 513 (781)
T 3v9f_A 438 KFQI-IELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF 513 (781)
T ss_dssp EEEE-CCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred cEEE-eccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence 5432 221 1123467788888888765544 4 45889998876543322222 46799999999998777664
No 262
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.24 E-value=0.0016 Score=54.82 Aligned_cols=219 Identities=12% Similarity=0.092 Sum_probs=124.0
Q ss_pred cceeEEEeecCCCEEE-EeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC
Q 019603 28 GKINSLDFHRKDDLLV-TASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD 106 (338)
Q Consensus 28 ~~V~~l~~s~~~~~l~-s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (338)
....+++|++++..|+ +-..++.|..+++..+...............+++.+....++.+. ...+.|..++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d-----~~~~~I~~~~~~g 110 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD-----SQLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEE-----CCCCEEEEEEcCC
Confidence 4567999999766555 444578999999876543222211123445566655545555432 2236788888764
Q ss_pred CeEEEeecCCccceEEEEEcCCCCEEEEEEC---CCeEEEEECCCcceeeeee---ecCccEEEEcCCCC-EEEEEEcCC
Q 019603 107 NRILRYFKGHKERVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILR---LRGRPTVAFDQQGL-VFAVAMEAG 179 (338)
Q Consensus 107 ~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~---D~~I~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~dg 179 (338)
..........-.....++++|++..|+.+.. .+.|..+++.... ...+. ......+++++++. ++++....+
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence 3322222222245688999997665544443 3688888875322 22222 12223478999765 445555668
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCC
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 258 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 258 (338)
.|..+|..... ...+ ..+ ......++. ++..++++. ..+.|..++..+++....+.... ......+++.|+
T Consensus 190 ~I~~~~~~g~~---~~~~-~~~-~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 190 RAECLNPAQPG---RRKV-LEG-LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp EEEEEETTEEE---EEEE-EEC-CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred EEEEEecCCCc---eEEE-ecC-CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 89999875311 1111 111 122334544 345555554 56789999998887765543221 113556777777
Q ss_pred CC
Q 019603 259 GQ 260 (338)
Q Consensus 259 ~~ 260 (338)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.23 E-value=0.0024 Score=56.37 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=146.0
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR 108 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 108 (338)
..++....++. +|+-+ ....|+..++....... +.........+.+......++.+. ...+.|+.+++....
T Consensus 35 ~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~-~~~~~~~~~~l~~d~~~~~ly~~D-----~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSD-----VTLDRILRANLNGSN 106 (349)
T ss_dssp SSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEE-EECSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCS
T ss_pred CCcccccccCc-eeEee-cccceEEEeCCCCeeEE-eecCCCceEEEEEeccccEEEEEe-----ccCCceEEEecCCCC
Confidence 34555555533 33333 34568888886554332 222233345556655555555432 234678888887665
Q ss_pred EEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCC-CCEEEEEEcC-CeEEE
Q 019603 109 ILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQ-GLVFAVAMEA-GAIKL 183 (338)
Q Consensus 109 ~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~d-g~i~i 183 (338)
....+........++++.+.+. .+++-...+.|.+.++........+. +.....++++|. +.++.+.... +.|..
T Consensus 107 ~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 4444433344567889987554 55666677899999986443222221 122335788885 4455555555 77877
Q ss_pred EeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEE
Q 019603 184 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 262 (338)
Q Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l 262 (338)
+++..... ..+....-..-..++++|++..+..+. ..+.|..++........... ........+++ ..+..+
T Consensus 187 ~~~dG~~~----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~--~~~~~P~giav-~~~~ly 259 (349)
T 3v64_C 187 SSMDGSGR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLY 259 (349)
T ss_dssp EETTSCSC----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEE-ETTEEE
T ss_pred EeCCCCCc----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe--CCCCCceEEEE-ECCEEE
Confidence 77543111 111112233467899998776665554 46789999976443222221 11234566777 355666
Q ss_pred EEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEE-cCCC
Q 019603 263 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW-APRR 301 (338)
Q Consensus 263 ~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~-~p~~ 301 (338)
++-...+.|...+..+++.+..+........+|++ +|..
T Consensus 260 ~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~ 299 (349)
T 3v64_C 260 WTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQR 299 (349)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGG
T ss_pred EecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEcccc
Confidence 67677888999987777766666544344445544 5543
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.19 E-value=0.0031 Score=56.45 Aligned_cols=243 Identities=11% Similarity=0.044 Sum_probs=140.4
Q ss_pred CCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEc
Q 019603 47 DDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMS 126 (338)
Q Consensus 47 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~ 126 (338)
....|+..++..+..... .........+.+......++.+. ...+.|+.+++........+.........+++.
T Consensus 94 ~~~~I~~i~~~~~~~~~~-~~~~~~~~gl~~d~~~~~ly~~D-----~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd 167 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLL-LNNLENAIALDFHHRRELVFWSD-----VTLDRILRANLNGSNVEEVVSTGLESPGGLAVD 167 (386)
T ss_dssp CBSCEEEECTTSCCCEEE-ECSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCCEEEEECSSCSCCCCEEEE
T ss_pred cCccceeeccCCCcEEEE-ecCCCccEEEEEecCCCeEEEEe-----CCCCcEEEEecCCCCcEEEEeCCCCCccEEEEE
Confidence 346788888876543322 22233445566655455555432 234678888887665444444334455778898
Q ss_pred CCCC-EEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCCCC-EEEEEEcC-CeEEEEeCCCCCCCCCeeEEecC
Q 019603 127 PVND-SFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGL-VFAVAMEA-GAIKLFDSRSYDKGPFDTFLVGG 201 (338)
Q Consensus 127 ~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~ 201 (338)
+.+. .+++-...+.|.+.++........+. +....-++++|.+. ++.+.... +.|..+++... ....+...
T Consensus 168 ~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~ 243 (386)
T 3v65_B 168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS----GRRIIADT 243 (386)
T ss_dssp TTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----SCEEEECS
T ss_pred eCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC----CcEEEEEC
Confidence 7554 55666677889998876433222221 12223478887554 55555444 67777775431 11222222
Q ss_pred CCCceEEEEEcCCCCEEEEE-ecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 202 DTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 202 ~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
....-..++++|++..++.+ +..+.|..++........... ........+++ ..+..+++-...+.|+.++..+++
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 23446789999876666555 446779999876433222221 11234566777 455666677778899999977777
Q ss_pred eEeEeeCCCCceEEEEE-cCCCc
Q 019603 281 EVACWNGNIGVVACLKW-APRRA 302 (338)
Q Consensus 281 ~~~~~~~h~~~v~~l~~-~p~~~ 302 (338)
.+..+........+|++ +|..+
T Consensus 321 ~~~~i~~~~~~p~gi~v~~~~~q 343 (386)
T 3v65_B 321 NQEIIRNKLHFPMDIHTLHPQRQ 343 (386)
T ss_dssp SCEEEECSCSCCCCEEEESGGGS
T ss_pred ceEEEccCCCCCceEEEEchhcC
Confidence 77776544444455554 44433
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.0075 Score=59.15 Aligned_cols=271 Identities=9% Similarity=0.035 Sum_probs=155.3
Q ss_pred CCcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEee----------cccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 26 FGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYH----------KKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 26 h~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
....|.++...++|.+- .|..++.|..++..++.... +.. ....+.++....++. +.+++.
T Consensus 311 ~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~------ 381 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD------ 381 (781)
T ss_dssp SSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB------
T ss_pred CCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCC-EEEEeC------
Confidence 34678999999888754 46667789999887654322 111 011233333322222 222221
Q ss_pred CceeEEEEccCCeEEEee---cCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee--ecCc--cEEEEcCC
Q 019603 96 GESLRYLSMYDNRILRYF---KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGR--PTVAFDQQ 168 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~---~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~--~~~~~~~~ 168 (338)
++.+..++..++...... ......|.++...+++. |..|+.++.|..+|.++++...... .... ..+..+++
T Consensus 382 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 460 (781)
T 3v9f_A 382 GGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN 460 (781)
T ss_dssp SSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT
T ss_pred CCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC
Confidence 244666766543322111 12346799998887765 4457777889999987765432211 1112 23445556
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecC----CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
|. +.+|+. +-+..+|..... +..+.... ....|.++...++|. +.+++.++.+..++..+++... +...
T Consensus 461 g~-lwigt~-~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~ 533 (781)
T 3v9f_A 461 KK-IWIGTH-AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRK-FNQY 533 (781)
T ss_dssp SE-EEEEET-TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEE-ECTT
T ss_pred CC-EEEEEC-CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEE-ccCC
Confidence 65 444555 567788865432 21221111 135688888888887 4555555568888876654332 3211
Q ss_pred -C-CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC----CCceEEEEEcCCCceEEeecceEEEee
Q 019603 245 -P-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAASSVLSFWI 315 (338)
Q Consensus 245 -~-~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h----~~~v~~l~~~p~~~~l~s~s~~~~iw~ 315 (338)
+ ....+.++...++|.+.++.. +|-|..||..+++. ..+... ...|.++...+++.+.+++..-+..+.
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~ 608 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYI 608 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEE
T ss_pred CCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEE
Confidence 1 124577888889998766554 66658888876543 334322 246889999999988887764444443
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.14 E-value=0.0022 Score=58.43 Aligned_cols=242 Identities=10% Similarity=0.045 Sum_probs=131.0
Q ss_pred eeEEEeecC--CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC
Q 019603 30 INSLDFHRK--DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN 107 (338)
Q Consensus 30 V~~l~~s~~--~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (338)
-.+|+|+|+ +..|+.+...+.|+.+|+.++..... .........+++..++. ++.+...+. .....+..++...+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~-~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSS-DTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSC-TTSEEEEEECGGGT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCC-cccceEEEEECCCC
Confidence 468999985 44455554448999999987775433 33333456677776665 443322110 00111222222211
Q ss_pred eE-EEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcce-eeeeeecC---ccEEEEcCCCC-EEEEEEcCCe
Q 019603 108 RI-LRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRG---RPTVAFDQQGL-VFAVAMEAGA 180 (338)
Q Consensus 108 ~~-~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~-~~~~~~~~---~~~~~~~~~~~-~~~~~~~dg~ 180 (338)
.. ...+. .-..-..++++| ++..+++-..++.|+.+|..++.. ...+.... ...++++|++. ++++....+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 10 01111 123345678899 666666666778999999876655 22222211 12489999998 5556666788
Q ss_pred EEEEeCCCCCC--CCCeeEEec-C------------CCCceEEEEE---------cCCCCEEEEEecCCcEEEEEccCCe
Q 019603 181 IKLFDSRSYDK--GPFDTFLVG-G------------DTAEVCDIKF---------SNDGKSMLLTTTNNNIYVLDAYGGE 236 (338)
Q Consensus 181 i~i~d~~~~~~--~~~~~~~~~-~------------~~~~i~~v~~---------sp~~~~i~~~~~d~~i~i~~~~~~~ 236 (338)
|+.++...... .....+.-. + .-..-..+++ .+++..+++-...+.|+.++. .|.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 98877542110 000011100 0 0122456788 666766666666778998875 454
Q ss_pred eEEEeeeCCC----------------CCCCeeEEEC-CCCCEEEEEcCCCcEEEEECC
Q 019603 237 KRCGFSLEPS----------------PNTNTEATFT-PDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 237 ~~~~~~~~~~----------------~~~~~~~~fs-~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
.. .+...+. ......++++ ++|.++++-..+..|+..+++
T Consensus 376 v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 33 2222111 1234568888 566666666667777777654
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.13 E-value=0.0057 Score=58.00 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=110.0
Q ss_pred CCEEEEeeC-CCcEEEEEc-CCCeeEeEEeecccC-e----------eeEEEeecCCe----eEEecCccCCCCCceeEE
Q 019603 39 DDLLVTASD-DDSVRLYDI-VSAKLIKTTYHKKHG-A----------DCVCFTHHPSS----VICSTKYNLDSTGESLRY 101 (338)
Q Consensus 39 ~~~l~s~s~-D~~i~iWd~-~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~ 101 (338)
+..|+.++. ++.|..+|. .+|+.+......... . ....+.+.... ++..+ .++.+.-
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t------~dg~l~A 135 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ------LDGNVAA 135 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC------TTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc------CCCEEEE
Confidence 556777777 899999999 999988765433211 0 01122112222 44332 2467888
Q ss_pred EEccCCeEEEeecCCc--c--ceEE-EEEcCCCCEEEEEE------CCCeEEEEECCCcceeeeeeecCcc---------
Q 019603 102 LSMYDNRILRYFKGHK--E--RVIS-LCMSPVNDSFMSGS------LDHSVRIWDLRVNACQGILRLRGRP--------- 161 (338)
Q Consensus 102 ~~~~~~~~~~~~~~H~--~--~V~~-l~~~~~~~~l~Sgs------~D~~I~iWd~~~~~~~~~~~~~~~~--------- 161 (338)
+|..+|+.+....... . .+++ -.+. ++ .++.++ .++.|+.+|.++++.+-.+......
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~ 213 (599)
T 1w6s_A 136 LNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF 213 (599)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred EECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence 8988888876543211 1 1211 0111 33 444444 4899999999999876555432110
Q ss_pred -------------------------------EEEEcCCCCEEEEEEcC----------------CeEEEEeCCCCCCCCC
Q 019603 162 -------------------------------TVAFDQQGLVFAVAMEA----------------GAIKLFDSRSYDKGPF 194 (338)
Q Consensus 162 -------------------------------~~~~~~~~~~~~~~~~d----------------g~i~i~d~~~~~~~~~ 194 (338)
..++++...++..+..+ +.+..+|.++.+. .
T Consensus 214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~--~ 291 (599)
T 1w6s_A 214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA--K 291 (599)
T ss_dssp TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE--E
T ss_pred ccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce--e
Confidence 23556666666666554 3677777765432 1
Q ss_pred eeEEecCCCC-------ceEEEEEc-CCC---CEEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 195 DTFLVGGDTA-------EVCDIKFS-NDG---KSMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 195 ~~~~~~~~~~-------~i~~v~~s-p~~---~~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
..+....+.. ...-+... .+| +.++.++.++.++++|..+|+.+..+..
T Consensus 292 W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 351 (599)
T 1w6s_A 292 FGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL 351 (599)
T ss_dssp EEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred eEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccc
Confidence 2222222211 11112222 466 3566677899999999999988765543
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.11 E-value=0.00089 Score=65.52 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=73.7
Q ss_pred cCCc-ceeEEEee-cCCCEEEEee-CC----CcEEEEEcCCC-eeEeE-EeecccCeeeEEEeecCCeeEEecCccCCCC
Q 019603 25 DFGG-KINSLDFH-RKDDLLVTAS-DD----DSVRLYDIVSA-KLIKT-TYHKKHGADCVCFTHHPSSVICSTKYNLDST 95 (338)
Q Consensus 25 ~h~~-~V~~l~~s-~~~~~l~s~s-~D----~~i~iWd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
+|+- .+...+|| |||++|+-+. .+ ..|+++|+.++ +.+.. +.. ......|++++..++.... +..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~---d~~ 243 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTK---DET 243 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEE---CTT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEE---CCC
Confidence 4553 67889999 9999776433 22 35999999988 63211 111 1234567777777765532 111
Q ss_pred C--ceeEEEEccCCe--EEEeec-CCccceEEEEEcCCCCEEEEEE---CCCeEEEEECCCc
Q 019603 96 G--ESLRYLSMYDNR--ILRYFK-GHKERVISLCMSPVNDSFMSGS---LDHSVRIWDLRVN 149 (338)
Q Consensus 96 ~--~~i~~~~~~~~~--~~~~~~-~H~~~V~~l~~~~~~~~l~Sgs---~D~~I~iWd~~~~ 149 (338)
+ ..|..+++.++. ....+. .+.....++.|+|++++|+..+ ....|.++|+..+
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 1 357777777653 122332 2334567889999999877544 3456888898765
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.08 E-value=0.0023 Score=53.70 Aligned_cols=203 Identities=9% Similarity=0.063 Sum_probs=124.9
Q ss_pred EeecCCccceEEEEEcCCCCEE-EEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcCCCCEEEEEEcCCeEEEEeC
Q 019603 111 RYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDS 186 (338)
Q Consensus 111 ~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~dg~i~i~d~ 186 (338)
+.+.+-.+.+..+++.|+++.| +....++.|...|+. ++....+.+.+ ..-+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3456666789999999987655 456778899999987 77766666543 234677777766555556677888776
Q ss_pred CCCCCCC-CeeEEe----cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccC---CeeEEEe-----eeCCCCCCCeeE
Q 019603 187 RSYDKGP-FDTFLV----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGF-----SLEPSPNTNTEA 253 (338)
Q Consensus 187 ~~~~~~~-~~~~~~----~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~---~~~~~~~-----~~~~~~~~~~~~ 253 (338)
....... ...... ...+.....++|+|.++.++++.......+|.... +...... ...........+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 4322100 111111 12345578899999998777777655555554331 1111111 011122346788
Q ss_pred EECCCC-CEEEEEcCCCcEEEEECCCCCeEeEeeCCC---------CceEEEEEcCCCceEEeecceEEEeee
Q 019603 254 TFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAASSVLSFWIP 316 (338)
Q Consensus 254 ~fs~~~-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~l~s~s~~~~iw~~ 316 (338)
+|+|.. .+++...+.+.+.+.|.. ++.+..+.-.. ..--.|+|.|+|++++++-.+ .+|..
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f 249 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRF 249 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEE
Confidence 999875 455666788889999976 45555554221 245789999999977774333 44444
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.07 E-value=0.00034 Score=67.41 Aligned_cols=245 Identities=11% Similarity=0.039 Sum_probs=126.1
Q ss_pred hccccceeecc-CCcceeEEEeecCCCEEEEee-CCCcEEEEEcCCCeeEeEEeecccCe-eeEEEeecCCeeEEecC-c
Q 019603 15 RSMAMAAIFSD-FGGKINSLDFHRKDDLLVTAS-DDDSVRLYDIVSAKLIKTTYHKKHGA-DCVCFTHHPSSVICSTK-Y 90 (338)
Q Consensus 15 ~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~s-~D~~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~ 90 (338)
+++.+...+.. +..-..++++..+|++++.|| .+..+.+||..+.+............ ...+...++ .++.... .
T Consensus 229 ~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~ 307 (656)
T 1k3i_A 229 GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSW 307 (656)
T ss_dssp CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCC
T ss_pred CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcc
Confidence 33444433322 334445677888999999998 45689999998876543211111111 112222133 3333222 1
Q ss_pred cCCCCCceeEEEEccCCeEEEe-------ecCCccceEEEEEcCCCCEEEEEECC---------CeEEEEECCCcceeee
Q 019603 91 NLDSTGESLRYLSMYDNRILRY-------FKGHKERVISLCMSPVNDSFMSGSLD---------HSVRIWDLRVNACQGI 154 (338)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~-------~~~H~~~V~~l~~~~~~~~l~Sgs~D---------~~I~iWd~~~~~~~~~ 154 (338)
.-...-..+.+||..+++.... +..... ...+..+++.++.|+.| ..+..||..++.....
T Consensus 308 ~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~ 384 (656)
T 1k3i_A 308 SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS 384 (656)
T ss_dssp CSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred cCCcccccceEeCCCCCcceeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec
Confidence 1111125688899887654432 100000 01122344445555544 4568889876653222
Q ss_pred eeec-----------CccEEEEc-CCCCEEEEEEcCC-----------eEEEEeCCCCCCCCCeeEEe--cCCC-CceEE
Q 019603 155 LRLR-----------GRPTVAFD-QQGLVFAVAMEAG-----------AIKLFDSRSYDKGPFDTFLV--GGDT-AEVCD 208 (338)
Q Consensus 155 ~~~~-----------~~~~~~~~-~~~~~~~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~--~~~~-~~i~~ 208 (338)
.... ....+.+. .++.+++.|+.++ .+.+||...... .... .... ..-..
T Consensus 385 ~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~mp~~R~~~~ 460 (656)
T 1k3i_A 385 AGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN----TVFASNGLYFARTFHT 460 (656)
T ss_dssp EEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE----EEECTTCCSSCCBSCE
T ss_pred CCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe----eEEccCCCCCCcccCC
Confidence 2111 11223343 3677777777532 566676543221 1111 1111 11233
Q ss_pred EEEcCCCCEEEEEecC-----------CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 209 IKFSNDGKSMLLTTTN-----------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 209 v~~sp~~~~i~~~~~d-----------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
+...|+++.+++++.+ ..+.+||..+++....-...........+.+.|+|+.++.||.
T Consensus 461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4567899999988864 4689999887765432222211122334567799999999985
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=0.0027 Score=57.72 Aligned_cols=243 Identities=12% Similarity=0.136 Sum_probs=129.5
Q ss_pred eeEEEeec-CCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe
Q 019603 30 INSLDFHR-KDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR 108 (338)
Q Consensus 30 V~~l~~s~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 108 (338)
-..|+|+| ++..|+.+...+.|+.+|+..+..... .........+++..++..++.+.... ......+..++.....
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyvad~~~-~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIITNDQN-NNDRPNNYILTRESGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEEECCS-CTTSEEEEEEEGGGTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEEeCCC-CcccceEEEEeCCCce
Confidence 46899998 456666665558899999987664432 23333455667766665455443211 0011123333332211
Q ss_pred E-EEeecCCccceEEEEEcC-CCCEEEEEECCCeEEEEECCCcceeeeeeecC---ccEEEEcCCCC-EEEEEEcCCeEE
Q 019603 109 I-LRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGL-VFAVAMEAGAIK 182 (338)
Q Consensus 109 ~-~~~~~~H~~~V~~l~~~~-~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~dg~i~ 182 (338)
. ...+. ......+++++| ++..+++-...+.|..+|...+.......... ..-++++|+|. ++++....+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1 11221 123345678999 66666676678899999987665422233221 23589999998 555666778888
Q ss_pred EEeCCCCC--CCCCeeEEec-CC------------CCceE-EEEEc--------CCCCEEEEEecCCcEEEEEccCCeeE
Q 019603 183 LFDSRSYD--KGPFDTFLVG-GD------------TAEVC-DIKFS--------NDGKSMLLTTTNNNIYVLDAYGGEKR 238 (338)
Q Consensus 183 i~d~~~~~--~~~~~~~~~~-~~------------~~~i~-~v~~s--------p~~~~i~~~~~d~~i~i~~~~~~~~~ 238 (338)
.++..... ......+.-. +. -..-. .+... +++..+++-...+.|+.++. .|...
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~ 374 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT 374 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE
Confidence 87753210 0000011100 00 00112 34442 33444445455677888873 45433
Q ss_pred EEeeeCC----------------CCCCCeeEEECCC-CCEEEEEcCCCcEEEEECC
Q 019603 239 CGFSLEP----------------SPNTNTEATFTPD-GQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 239 ~~~~~~~----------------~~~~~~~~~fs~~-~~~l~sgs~Dg~i~vWd~~ 277 (338)
. +...+ .......++++|+ +.++++-..+..|+..+.+
T Consensus 375 ~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 375 T-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp E-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred E-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 22110 0124567888884 6566665667778777653
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.007 Score=55.01 Aligned_cols=212 Identities=9% Similarity=0.103 Sum_probs=118.8
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEEC-CC----eEEEEECCCccee--eee-eecCccEEEEcC-
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSL-DH----SVRIWDLRVNACQ--GIL-RLRGRPTVAFDQ- 167 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~-D~----~I~iWd~~~~~~~--~~~-~~~~~~~~~~~~- 167 (338)
+.|+.+++.++...... ........++|+++++.|+.+.. .+ .+...+ +.+... ..+ .......++++|
T Consensus 159 ~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~~~~p~giavdp~ 236 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTKGQNCNGAETHPI 236 (430)
T ss_dssp EEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEECSSCCCEEECTT
T ss_pred CcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeeccCCCceEEEEeCC
Confidence 67888888776544433 34556789999999995544443 22 233344 333322 122 223334578899
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEccC--Cee--EEEee
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYG--GEK--RCGFS 242 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~~--~~~--~~~~~ 242 (338)
+|.++++-...+.|..++..... ...+...+....-..++|+|++++++++ ...+.|+.++... +.. ...+.
T Consensus 237 ~g~lyv~d~~~~~V~~~~~~~~~---~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~a 313 (430)
T 3tc9_A 237 NGELYFNSWNAGQVFRYDFTTQE---TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVC 313 (430)
T ss_dssp TCCEEEEETTTTEEEEEETTTTE---EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCc---EEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEe
Confidence 78888877788899999875321 1011111222346679999999955544 4567888887643 221 11111
Q ss_pred eC-CC------------CCCCe-eEEEC--------CCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC---------C--
Q 019603 243 LE-PS------------PNTNT-EATFT--------PDGQYVVSGSGDGTLHAWNINTRNEVACWNGN---------I-- 289 (338)
Q Consensus 243 ~~-~~------------~~~~~-~~~fs--------~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h---------~-- 289 (338)
.. +. ..... .++.. ++|.++++-.....|+.++. +++. ..+.+. .
T Consensus 314 g~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v-~~~~g~g~~~~~G~~dG~ 391 (430)
T 3tc9_A 314 GQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRV-TTFAGRGSNGTSGYNDGD 391 (430)
T ss_dssp ECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEE-EEEEECCTTSSSSCBCEE
T ss_pred ccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcE-EEEEeCCCCCCCcccCCC
Confidence 11 00 01112 34442 44666666667788888883 4533 333221 1
Q ss_pred -------CceEEEEEcCC-CceEEeecceEEEee
Q 019603 290 -------GVVACLKWAPR-RAMFVAASSVLSFWI 315 (338)
Q Consensus 290 -------~~v~~l~~~p~-~~~l~s~s~~~~iw~ 315 (338)
..-..|++.|+ +.++++-...-+|..
T Consensus 392 ~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 425 (430)
T 3tc9_A 392 LRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425 (430)
T ss_dssp TTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred chhhcEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 14689999995 666665444444443
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.00 E-value=0.006 Score=52.88 Aligned_cols=228 Identities=10% Similarity=0.002 Sum_probs=129.8
Q ss_pred CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC----CeEEEeecCCccceEEEE
Q 019603 49 DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD----NRILRYFKGHKERVISLC 124 (338)
Q Consensus 49 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~H~~~V~~l~ 124 (338)
..|+..|+.+......+ ........+.+......++.+. ...+.|..+++.+ ......+...-....+++
T Consensus 10 ~~I~~i~~~~~~~~~~~-~~~~~p~g~~~d~~~~~ly~~D-----~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 83 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSD-----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83 (316)
T ss_dssp SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEE-----TTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred CeEEEEECCCcceEehh-cCCCceEEEEEEeCCCEEEEEE-----CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence 56888888766543322 2233444555655444555432 2346788888765 222222333334567889
Q ss_pred EcCCCC-EEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCCCC-EEEEEEcC-CeEEEEeCCCCCCCCCeeEEe
Q 019603 125 MSPVND-SFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGL-VFAVAMEA-GAIKLFDSRSYDKGPFDTFLV 199 (338)
Q Consensus 125 ~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~ 199 (338)
+++.++ ..++-...+.|.+.|+........+. ......++++|.+. ++.+.... +.|..+++... ....+.
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~----~~~~~~ 159 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLV 159 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----CEEEEE
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----CeEEEE
Confidence 987554 55666778999999986543322222 12233578888554 44444333 67777775321 112222
Q ss_pred cCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCC
Q 019603 200 GGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 278 (338)
Q Consensus 200 ~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~ 278 (338)
...-.....++++|++..++.+. ..+.|..++.....................+++. .+..+++-...+.|..++..+
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence 22334567899999877666554 4578999998644332222222222345667775 456666777788999999877
Q ss_pred CCeEeEeeC
Q 019603 279 RNEVACWNG 287 (338)
Q Consensus 279 ~~~~~~~~~ 287 (338)
++.+..+..
T Consensus 239 g~~~~~i~~ 247 (316)
T 1ijq_A 239 GSDVNLLAE 247 (316)
T ss_dssp CCCCEEEEC
T ss_pred CcceEEEec
Confidence 776666653
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.00 E-value=0.0079 Score=54.06 Aligned_cols=248 Identities=10% Similarity=0.015 Sum_probs=142.8
Q ss_pred EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC----eEEEeecCC
Q 019603 41 LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN----RILRYFKGH 116 (338)
Q Consensus 41 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~H 116 (338)
+|+.+. ...|+..++........ ......+..+.+......++.+. ...+.|+.+++... .....+...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~-~~~~~~~~~l~~d~~~~~lywsD-----~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSD-----LSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEE-ECSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEec-cceeEEEccCCcceeEe-ccccCcceEEeeeeccCceEEEe-----cCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 444443 47788888876543322 22334455666665555555432 23467777777652 223333334
Q ss_pred ccceEEEEEcCC-CCEEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCCCC-EEEEEEc-CCeEEEEeCCCCCC
Q 019603 117 KERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGL-VFAVAME-AGAIKLFDSRSYDK 191 (338)
Q Consensus 117 ~~~V~~l~~~~~-~~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-dg~i~i~d~~~~~~ 191 (338)
.....++++.+. ++.+++-...+.|.+.|+........+. +.....++++|.+. ++.+... .+.|..+++....
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~- 236 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 236 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-
Confidence 556788999985 4455666778899999986554332222 12234578888554 4444433 3677777764211
Q ss_pred CCCeeEEecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCc
Q 019603 192 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 270 (338)
Q Consensus 192 ~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~ 270 (338)
...+....-.....++++|++..++.+. ..+.|..++.....................+++. .+..+.+-...+.
T Consensus 237 ---~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~ 312 (400)
T 3p5b_L 237 ---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 312 (400)
T ss_dssp ---CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred ---cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence 1222223334578899998877666554 4678999997654433323322222344566663 3456666677888
Q ss_pred EEEEECCCCCeEeEeeCCCCceEEEE-EcCC
Q 019603 271 LHAWNINTRNEVACWNGNIGVVACLK-WAPR 300 (338)
Q Consensus 271 i~vWd~~~~~~~~~~~~h~~~v~~l~-~~p~ 300 (338)
|+.+|..+++.+..+........+|+ ++|.
T Consensus 313 V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~ 343 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLAENLLSPEDMVLFHNL 343 (400)
T ss_dssp EEEEESSSCCCCEEEECSCSCEEEEEEESGG
T ss_pred EEEEEcCCCCceEEEecCCCCCceEEEEeec
Confidence 99999888877777764444455543 4443
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.95 E-value=0.0067 Score=54.24 Aligned_cols=212 Identities=10% Similarity=0.041 Sum_probs=125.5
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeee--cCccEEEEcCC-CCEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQ-GLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~ 172 (338)
..|+.+++.......... .......++|++.+. .+++-...+.|+.+++........+.. ....-+++++. +.++
T Consensus 96 ~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY 174 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY 174 (386)
T ss_dssp SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEE
T ss_pred ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEE
Confidence 567777776655444333 334578899997655 556666788999999876543322221 12234788874 4555
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-C-CcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-NNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d-~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
.+....+.|.++++... ....+..........++++|.+..++.+.. . +.|+.+++....... +. .......
T Consensus 175 ~~d~~~~~I~~~~~dg~----~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~~-~~~~~~P 248 (386)
T 3v65_B 175 WTDSGTSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI-IA-DTHLFWP 248 (386)
T ss_dssp EEETTTTEEEECBTTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-EE-CSSCSCE
T ss_pred EEcCCCCeEEEEeCCCC----ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE-EE-ECCCCCe
Confidence 66666778888775421 112233333345778899997776665543 3 678888875433222 21 1222346
Q ss_pred eeEEECCCCCEEE-EEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEEeee
Q 019603 251 TEATFTPDGQYVV-SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIP 316 (338)
Q Consensus 251 ~~~~fs~~~~~l~-sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~ 316 (338)
..++|+|++..|+ +-+..+.|+.+++........+........+|++ ..+.++++-...-+|+.+
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEE
Confidence 7899998766555 4466778999998754444444434455678888 344444444333333333
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.92 E-value=0.016 Score=54.80 Aligned_cols=197 Identities=14% Similarity=0.095 Sum_probs=107.4
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeE-------EEeecCCeeEEecCccCCCCCceeEEEEccCCeEEE
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCV-------CFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILR 111 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (338)
+..|+.++.++.|..+|..+|+.+............. ........++..+ .++.+.-+|..+|+.+.
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t------~dg~l~AlD~~TG~~~W 141 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT------LDASVVALNKNTGKVVW 141 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE------TTTEEEEEESSSCCEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe------CCCEEEEEECCCCCEEe
Confidence 3455556654459999999999887654432110000 0011233344332 23678889998998876
Q ss_pred eecCCcc----ceEE-EEEcC---CCC-EEEEEE------CCCeEEEEECCCcceeeeeeecC-----------------
Q 019603 112 YFKGHKE----RVIS-LCMSP---VND-SFMSGS------LDHSVRIWDLRVNACQGILRLRG----------------- 159 (338)
Q Consensus 112 ~~~~H~~----~V~~-l~~~~---~~~-~l~Sgs------~D~~I~iWd~~~~~~~~~~~~~~----------------- 159 (338)
.+..... .+.+ -.+.. +++ .++.++ .++.|..+|.++++..-......
T Consensus 142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~ 221 (582)
T 1flg_A 142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDV 221 (582)
T ss_dssp EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCT
T ss_pred eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccc
Confidence 6543221 1111 01111 223 555554 38999999999988754433210
Q ss_pred -----------------------c---cEEEEcCCCCEEEEEEc--------------------C----CeEEEEeCCCC
Q 019603 160 -----------------------R---PTVAFDQQGLVFAVAME--------------------A----GAIKLFDSRSY 189 (338)
Q Consensus 160 -----------------------~---~~~~~~~~~~~~~~~~~--------------------d----g~i~i~d~~~~ 189 (338)
. ...++++...++.++.. | +.+..+|.++.
T Consensus 222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG 301 (582)
T 1flg_A 222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG 301 (582)
T ss_dssp TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred ccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence 0 11355666566665553 2 47778887664
Q ss_pred CCCCCeeEEecCCC-------CceEEEEEc-CCCC---EEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 190 DKGPFDTFLVGGDT-------AEVCDIKFS-NDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 190 ~~~~~~~~~~~~~~-------~~i~~v~~s-p~~~---~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
+. ...+....+. ....-+... .+|+ .++.++.++.++++|..+|+.+..+..
T Consensus 302 ~~--~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 302 EV--KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp CE--EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CE--EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 32 2222222221 111112222 4664 567788899999999999987765544
No 277
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.89 E-value=0.0095 Score=51.21 Aligned_cols=191 Identities=12% Similarity=0.057 Sum_probs=106.5
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCcc-EEEEcCCCCEEEEEEcCC--eEEEEeCCCCCCCCC
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPF 194 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~ 194 (338)
....+++|+++++.+++-...+.|..||...+ ....+...+.+ .++++++|.++++....+ .+..+|..... +
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~---~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT---V 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---E
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---E
Confidence 45678999999887777778899999998653 33333333333 478899998766554432 35556644322 2
Q ss_pred eeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCee-EEEeee-----C--CCCCCCeeEEECCCCCEEE-EE
Q 019603 195 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSL-----E--PSPNTNTEATFTPDGQYVV-SG 265 (338)
Q Consensus 195 ~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~-~~~~~~-----~--~~~~~~~~~~fs~~~~~l~-sg 265 (338)
..+...........+...+++..+++-..++.++++|...++. ...... . ........+ +|++++|+ +-
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 1111111112223344455444344444578899999765421 110000 0 111122334 78887655 45
Q ss_pred cCCCcEEEEECCC-CCe--EeEeeCCCCceEEEEEcCCCceEEeec--ceEEEee
Q 019603 266 SGDGTLHAWNINT-RNE--VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 315 (338)
Q Consensus 266 s~Dg~i~vWd~~~-~~~--~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~ 315 (338)
...+.|+++++.. ++. ...+.. ......+++.++++++++.. ..|.++.
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred CCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 6678999999874 321 122211 13456789999998777653 3444443
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.87 E-value=0.012 Score=51.85 Aligned_cols=212 Identities=10% Similarity=0.038 Sum_probs=125.1
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcceeeeeee--cCccEEEEcCC-CCEE
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQ-GLVF 172 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~ 172 (338)
..|+..++..........+ ......++|++.+. .+++-...+.|+.+++........+.. ....-+++++. +.++
T Consensus 53 ~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly 131 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY 131 (349)
T ss_dssp SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEE
Confidence 4566666655544443333 34578999997655 455666788999999876543322221 22345788874 4556
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-C-CcEEEEEccCCeeEEEeeeCCCCCCC
Q 019603 173 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-NNIYVLDAYGGEKRCGFSLEPSPNTN 250 (338)
Q Consensus 173 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d-~~i~i~~~~~~~~~~~~~~~~~~~~~ 250 (338)
.+....+.|.+++.... ....+..........++++|.+..++.+.. . +.|..+++....... +. .......
T Consensus 132 ~~d~~~~~I~~~~~dG~----~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~~-~~~~~~P 205 (349)
T 3v64_C 132 WTDSGTSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI-IA-DTHLFWP 205 (349)
T ss_dssp EEETTTTEEEEEETTSC----SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-SC-CSSCSCE
T ss_pred EEcCCCCeEEEEcCCCC----ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE-EE-ECCCCCc
Confidence 66666788888886532 112233333445778999997666655543 4 678888875433221 11 1122346
Q ss_pred eeEEECCCCCEEEE-EcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEEeee
Q 019603 251 TEATFTPDGQYVVS-GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIP 316 (338)
Q Consensus 251 ~~~~fs~~~~~l~s-gs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~ 316 (338)
..++|+|++..|+- -+..+.|+.+++........+........+|++. .+.++++-...-+|+.+
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSA 271 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEE
Confidence 78999987665554 4567789999987544443444444556778883 44444443333333433
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.87 E-value=0.0092 Score=54.26 Aligned_cols=213 Identities=10% Similarity=0.152 Sum_probs=121.4
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECC---Ce-EEEEECCCcce-eeee-eecCccEEEEcC-CC
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLD---HS-VRIWDLRVNAC-QGIL-RLRGRPTVAFDQ-QG 169 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D---~~-I~iWd~~~~~~-~~~~-~~~~~~~~~~~~-~~ 169 (338)
+.|+.++..++..... ........+++++++++.+++.... .. +...+...+.. ...+ ......-+++++ +|
T Consensus 162 ~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G 240 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNG 240 (433)
T ss_dssp SCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTC
T ss_pred CCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCC
Confidence 6788888877765543 3345568899999999955554321 22 33333221111 0111 122233477888 77
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCC-eeEEecCCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEcc--CCeeE--EEeee
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPF-DTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAY--GGEKR--CGFSL 243 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~--~~~~~--~~~~~ 243 (338)
.++++....+.|+.+|..... . ..+...+....-..++|+|++++++++ ...+.|+.++.. ++... ..+..
T Consensus 241 ~lyv~d~~~~~V~~~d~~~g~---~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag 317 (433)
T 4hw6_A 241 KIYYTRYHHAMISSYDPATGT---LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG 317 (433)
T ss_dssp CEEECBTTCSEEEEECTTTCC---EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred eEEEEECCCCEEEEEECCCCe---EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence 777777777888888865321 1 111111222233468999999955554 456789888754 22211 11111
Q ss_pred C-C------------CCCCCeeEEE---------CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCC-------------
Q 019603 244 E-P------------SPNTNTEATF---------TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN------------- 288 (338)
Q Consensus 244 ~-~------------~~~~~~~~~f---------s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h------------- 288 (338)
. + .......++| .++|.++++-.....|+.++. ++ .+.++.+.
T Consensus 318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-~v~t~~G~g~~~~~G~~dG~~ 395 (433)
T 4hw6_A 318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-RVTTYAGRGNSREWGYVDGEL 395 (433)
T ss_dssp CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-EEEEEECCCTTCSSCCBCEET
T ss_pred cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-CEEEEEeCCCCCccccCCCcc
Confidence 1 1 0123456888 778888888788889999985 44 33344322
Q ss_pred -----CCceEEEEEc-CCCceEEeecceEEEee
Q 019603 289 -----IGVVACLKWA-PRRAMFVAASSVLSFWI 315 (338)
Q Consensus 289 -----~~~v~~l~~~-p~~~~l~s~s~~~~iw~ 315 (338)
-..-..|++. +++.++++=...-+|.+
T Consensus 396 ~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 428 (433)
T 4hw6_A 396 RSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK 428 (433)
T ss_dssp TTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred ccccEeCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 1236789999 66666665444444443
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.84 E-value=0.012 Score=51.01 Aligned_cols=202 Identities=11% Similarity=0.057 Sum_probs=119.0
Q ss_pred ceeEEEEccCCe--EEEeecCCccceEEEEEcCCC-CEEEEEECCCeEEEEECCCcceee-eee--ecCccEEEEcC-CC
Q 019603 97 ESLRYLSMYDNR--ILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQG-ILR--LRGRPTVAFDQ-QG 169 (338)
Q Consensus 97 ~~i~~~~~~~~~--~~~~~~~H~~~V~~l~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~-~~~--~~~~~~~~~~~-~~ 169 (338)
..|+.+++.... ....+. ....+.++.|++.+ ..+++-...+.|..+++....... .+. +.....+++++ .+
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred CeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 567777776542 111122 22456788998854 456676778999999987653211 121 12334578886 45
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec--CCcEEEEEccCCeeEEEeeeCCCC
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSP 247 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~ 247 (338)
.++.+-...+.|.+++.... ....+..........+++.|.+..++.+.. .+.|..+++...... .+. ...-
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~----~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~l 165 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGS----LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-III-NSEI 165 (318)
T ss_dssp EEEEEETTTTEEEEEETTSC----SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEE-CSSC
T ss_pred eEEEEECCCCEEEEEECCCC----cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEE-ECCC
Confidence 56666667788988886532 112223233445678899987666665552 567888887543222 221 1122
Q ss_pred CCCeeEEECCCCCEEE-EEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEe
Q 019603 248 NTNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 248 ~~~~~~~fs~~~~~l~-sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s 306 (338)
.....++++|++..|+ +-+..+.|+.+|+..........+......+|++..+ .++++
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywt 224 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWT 224 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEE
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEE
Confidence 3457899999766555 4466788999999754333333334455667777543 33433
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.72 E-value=0.042 Score=53.80 Aligned_cols=229 Identities=10% Similarity=0.021 Sum_probs=129.9
Q ss_pred CCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCC----eEEEeecCCccceEE
Q 019603 47 DDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDN----RILRYFKGHKERVIS 122 (338)
Q Consensus 47 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~H~~~V~~ 122 (338)
....|+..++....... +......+..+.+......++.+. ...+.|+.+++... .....+........+
T Consensus 402 n~~~Ir~i~l~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD-----~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSD-----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp CBSSEEEECTTSCCCEE-EECSCSSEEEEEEETTTTEEEEEE-----TTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred cccceeEeeccCCccee-eecCCCceEEEeecccCCeeEEee-----ccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 34668887887554332 222333455566655455555432 22367777777642 223333434556778
Q ss_pred EEEcCCCC-EEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCC-CCEEEEEEcC-CeEEEEeCCCCCCCCCeeE
Q 019603 123 LCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQ-GLVFAVAMEA-GAIKLFDSRSYDKGPFDTF 197 (338)
Q Consensus 123 l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~ 197 (338)
|++.+.++ ++++-...+.|.+.++........+. +.....++++|. |.++.+-... +.|...++... ....
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~----~~~~ 551 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----DIYS 551 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----CEEE
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC----ceEE
Confidence 99998765 55677778999999986544322222 122345888886 4455554333 67777776421 1122
Q ss_pred EecCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 198 LVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 198 ~~~~~~~~i~~v~~sp~~~~i~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
++.........|+++|.+..|+.+- ..+.|..+++....................+++.. +.++++-...+.|+..|.
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANR 630 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeC
Confidence 3333335678899998766665554 45679999986544333332222222344566632 345556667788888887
Q ss_pred CCCCeEeEee
Q 019603 277 NTRNEVACWN 286 (338)
Q Consensus 277 ~~~~~~~~~~ 286 (338)
.+++.+..+.
T Consensus 631 ~tG~~~~~l~ 640 (791)
T 3m0c_C 631 LTGSDVNLLA 640 (791)
T ss_dssp TTCCCCEEEE
T ss_pred CCCcceEEee
Confidence 7776655554
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.72 E-value=0.019 Score=49.68 Aligned_cols=211 Identities=10% Similarity=0.046 Sum_probs=123.2
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCC----cceeeeee--ecCccEEEEcCC-
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRV----NACQGILR--LRGRPTVAFDQQ- 168 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~----~~~~~~~~--~~~~~~~~~~~~- 168 (338)
..|+..++.+.+....+. .-....++.|++.++ .+++-...+.|..+|+.. ......+. ......+++++.
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 567888887765544433 345678999998655 556666779999999875 12111221 122345788864
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC--CcEEEEEccCCeeEEEeeeCCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--NNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d--~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
+.++.+....+.|.+++.... ....+..........++++|.+..++.+... +.|..+++.... ...+. ...
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~----~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~-~~~ 162 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV-TEN 162 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE-CSS
T ss_pred CeEEEEECCCCEEEEEeCCCC----ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEE-ECC
Confidence 455566667788999886531 1122222233457788999977766655543 678888875332 22221 112
Q ss_pred CCCCeeEEECCCCCEEEE-EcCCCcEEEEECCCCCeEeEeeC--CCCceEEEEEcCCCceEEeecceEEEee
Q 019603 247 PNTNTEATFTPDGQYVVS-GSGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMFVAASSVLSFWI 315 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~s-gs~Dg~i~vWd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~~~~iw~ 315 (338)
......++++|++..|+- -+..+.|+.+|+........... ......+|++.. +.++++-...-+|..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~ 233 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFS 233 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEE
Confidence 245678999987766554 45677999999974333222222 224456788753 455554433333333
No 283
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.71 E-value=0.00047 Score=66.80 Aligned_cols=240 Identities=11% Similarity=0.048 Sum_probs=127.0
Q ss_pred CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC----CeEEEeecCCccceEEE
Q 019603 48 DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD----NRILRYFKGHKERVISL 123 (338)
Q Consensus 48 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~H~~~V~~l 123 (338)
.+.|+..++........+ .....+..+.+......++.+ +...+.|+.+++.+ ......+...-.....|
T Consensus 385 ~~~I~~id~~~~~~~~~~-~~~~~p~gla~d~~~~~Ly~s-----D~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWS-----DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp TTC-CEECTTSCCEECCS-CCCTTCCCCEEETTTTEEEEC-----CTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred ccceEEEeCCCCcceeee-ccCcceEEEccccccCeEEEE-----ecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 467888888765543222 122334455565544444433 23346788888764 22222222222345667
Q ss_pred EEcCCC-CEEEEEECCCeEEEEECCCcceeeeeee--cCccEEEEcCC-CCEEEEEEcC-CeEEEEeCCCCCCCCCeeEE
Q 019603 124 CMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQ-GLVFAVAMEA-GAIKLFDSRSYDKGPFDTFL 198 (338)
Q Consensus 124 ~~~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~ 198 (338)
++.+.+ +++++-...+.|.+.|+........+.. ....-++++|. +.++.+.... +.|..+++..... ..+
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l 534 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSL 534 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEE
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEE
Confidence 888544 4556656778999999865443222221 22234778875 4444443332 5666665432111 111
Q ss_pred ecCCCCceEEEEEcCCCCEEE-EEecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECC
Q 019603 199 VGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 277 (338)
Q Consensus 199 ~~~~~~~i~~v~~sp~~~~i~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~ 277 (338)
....-..-..|+|+|++..|+ +-+..+.|..+++....................+++..+ .++++....+.|+.++..
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 112223355688998765554 444567899998764433322221111223445666544 455566677899999988
Q ss_pred CCCeEeEeeCCCCceEEEEEc
Q 019603 278 TRNEVACWNGNIGVVACLKWA 298 (338)
Q Consensus 278 ~~~~~~~~~~h~~~v~~l~~~ 298 (338)
+++.+..+.......++|++.
T Consensus 614 ~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 614 TGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp TEEEEECCCTTCSSCCCCCBC
T ss_pred CCCceEEeecCCCCCcEEEEe
Confidence 888777765433334555443
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.66 E-value=0.019 Score=48.04 Aligned_cols=205 Identities=13% Similarity=0.138 Sum_probs=115.2
Q ss_pred eeccCCcceeEEEeecCCCEEEE-eeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVT-ASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLR 100 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s-~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (338)
.+.+-.+.+.+++|+|+++.|++ ...++.|...|.. ++.++.+.....
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~------------------------------ 69 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV------------------------------ 69 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC------------------------------
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC------------------------------
Confidence 45566678999999998775555 5567777777876 665544321100
Q ss_pred EEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcce---eeeee--------ecCccEEEEcCCC
Q 019603 101 YLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC---QGILR--------LRGRPTVAFDQQG 169 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~---~~~~~--------~~~~~~~~~~~~~ 169 (338)
...-++++.+++.++++.-.++.+.++++..... ..... ..+-.-++++|.+
T Consensus 70 -----------------~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~ 132 (255)
T 3qqz_A 70 -----------------KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD 132 (255)
T ss_dssp -----------------SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT
T ss_pred -----------------CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC
Confidence 1122334444444444433445555555432211 11111 1122458999998
Q ss_pred CEEEEEEcCCeEEEEeCCCCCCC-CCeeEEe-----cCCCCceEEEEEcCCCC-EEEEEecCCcEEEEEccCCeeEEEee
Q 019603 170 LVFAVAMEAGAIKLFDSRSYDKG-PFDTFLV-----GGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 170 ~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~~-----~~~~~~i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
..+.++.+.....+|........ .+..... .........+.++|... +++.+...+.+..+|.. |+.+..+.
T Consensus 133 ~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~ 211 (255)
T 3qqz_A 133 HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMS 211 (255)
T ss_dssp TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEE
T ss_pred CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEE
Confidence 77777776655566654311010 1111100 11233567889999655 45555566778888865 55666666
Q ss_pred eCCC-------CCCCeeEEECCCCCEEEEEcCCCcEEEEEC
Q 019603 243 LEPS-------PNTNTEATFTPDGQYVVSGSGDGTLHAWNI 276 (338)
Q Consensus 243 ~~~~-------~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~ 276 (338)
+... ......++|.++|...++ ++-..++++.-
T Consensus 212 L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 212 LTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred cCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 6532 124577999999985555 66666666654
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.52 E-value=0.047 Score=48.93 Aligned_cols=203 Identities=10% Similarity=0.035 Sum_probs=118.9
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCcc----eeeeee--ecCccEEEEcC-C
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNA----CQGILR--LRGRPTVAFDQ-Q 168 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~~----~~~~~~--~~~~~~~~~~~-~ 168 (338)
..|+..++......... .....+..++|++.+. .+++-...+.|+.+++.... ....+. .....-+++++ .
T Consensus 92 ~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~ 170 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 170 (400)
T ss_dssp TEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred ceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence 56777777665444333 3456788999998655 45566677899999986421 111111 12223477887 4
Q ss_pred CCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec--CCcEEEEEccCCeeEEEeeeCCC
Q 019603 169 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 169 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~--d~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
+.++.+....+.|.++++... ....++.........+++.|.+.+++.+.. .+.|...++......... ...
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~----~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~--~~~ 244 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--TEN 244 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTC----SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE--CSS
T ss_pred CceEEEECCCCeEEEEeCCCC----ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE--ECC
Confidence 556666667788888886532 122233333445778899997766665543 367888887644332211 122
Q ss_pred CCCCeeEEECCCCCEEEEE-cCCCcEEEEECCCCCeEeEeeC--CCCceEEEEEcCCCceEEee
Q 019603 247 PNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~ 307 (338)
-.....+++++++..|+-+ +....|+..|+........... .-....+|+... +.++++-
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd 307 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTD 307 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEec
Confidence 2456789999877766655 5677899999975444333332 223445677633 3344443
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.45 E-value=0.047 Score=47.32 Aligned_cols=242 Identities=12% Similarity=0.065 Sum_probs=131.4
Q ss_pred CCcEEEEEcCCCe-eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE-EEeecCCccceEEEEE
Q 019603 48 DDSVRLYDIVSAK-LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI-LRYFKGHKERVISLCM 125 (338)
Q Consensus 48 D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~H~~~V~~l~~ 125 (338)
...|+..++.... ..............+.|......++.+ +...+.|+.+++.++.. ...+...-....++++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~-----D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav 86 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWS-----DVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEE-----ETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEE-----ECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence 4678888887653 111111111223344554444444433 23346777787765532 1112222245667889
Q ss_pred cCCC-CEEEEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCCCC-EEEEEE-cCCeEEEEeCCCCCCCCCeeEEec
Q 019603 126 SPVN-DSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGL-VFAVAM-EAGAIKLFDSRSYDKGPFDTFLVG 200 (338)
Q Consensus 126 ~~~~-~~l~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~ 200 (338)
.+.+ +.+++-...+.|.++++........+. .....-++++|.+. ++.+.. ..+.|..+++... ....+..
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~ 162 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS----SRFIIIN 162 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC----SCEEEEC
T ss_pred EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC----CeEEEEE
Confidence 8754 455666677899999986433222211 12223478887544 444432 2467777765421 1122222
Q ss_pred CCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 201 GDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 201 ~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
..-..-..++++|++..+..+ +..+.|..++........... ........+++. .+..+.+-...+.|..++..++
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec--CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCC
Confidence 223446789999977666555 456789999976433322221 122345567775 3455666677889999999888
Q ss_pred CeEeEeeCCCCceEEEE-EcCCC
Q 019603 280 NEVACWNGNIGVVACLK-WAPRR 301 (338)
Q Consensus 280 ~~~~~~~~h~~~v~~l~-~~p~~ 301 (338)
+....+........+|+ ++|..
T Consensus 240 ~~~~~i~~~~~~P~~i~v~~~~~ 262 (318)
T 3sov_A 240 EGLREIHSDIFSPMDIHAFSQQR 262 (318)
T ss_dssp CSCEEEECCCSSCCCEEEECGGG
T ss_pred CceEEEeCCCCCCcEEEEecccc
Confidence 76666654333333443 45543
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.44 E-value=0.073 Score=52.14 Aligned_cols=213 Identities=10% Similarity=0.032 Sum_probs=123.1
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcCCCC-EEEEEECCCeEEEEECCCc----ceeeeee--ecCccEEEEcCCC
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVN----ACQGILR--LRGRPTVAFDQQG 169 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~-~l~Sgs~D~~I~iWd~~~~----~~~~~~~--~~~~~~~~~~~~~ 169 (338)
..|+..++...+...... ....+..++|++.+. ++++-...+.|+.+++... .....+. +....-+++++.+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 456666665554433333 456678899998544 5566667788999998642 1111221 1223458888766
Q ss_pred -CEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-C-CcEEEEEccCCeeEEEeeeCCC
Q 019603 170 -LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-NNIYVLDAYGGEKRCGFSLEPS 246 (338)
Q Consensus 170 -~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d-~~i~i~~~~~~~~~~~~~~~~~ 246 (338)
.++.+-...+.|.++++... ....++.........|++.|.+.+|+.+.. . +.|...++......... ...
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~----~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv--~~~ 556 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--TEN 556 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--CSS
T ss_pred CcEEEEecCCCeEEEEeCCCC----eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE--eCC
Confidence 45666667788998887532 222333333445788999998666665543 2 67888887644332222 122
Q ss_pred CCCCeeEEECCCCCEEEEE-cCCCcEEEEECCCCCeEeEeeCC--CCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 247 PNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 247 ~~~~~~~~fs~~~~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~h--~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
......+++++.+..|+-+ .....|+..++........+... -....+|++..+ +++++-...-+|+..+
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 629 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEE
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEe
Confidence 2457789999776666554 56678999999755444444432 233456766443 3333333334444443
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.38 E-value=0.028 Score=48.64 Aligned_cols=160 Identities=14% Similarity=0.202 Sum_probs=103.2
Q ss_pred cceEEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeeeeeecC-----c-----cEEEE---cCCCCEEEEEEc------
Q 019603 118 ERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILRLRG-----R-----PTVAF---DQQGLVFAVAME------ 177 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs-~D~~I~iWd~~~~~~~~~~~~~~-----~-----~~~~~---~~~~~~~~~~~~------ 177 (338)
-.-.++.|++....|+-++ ..++|..||...+....+ ...+ . .-+.+ ++++.++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3445678887666655555 799999999875543333 2221 1 23677 688777765442
Q ss_pred -------CCeEEEEeCC---CCCCCCCeeEEec----C-------CCCceEEEEEcCCCCEEEEEecC-CcEEEEEccCC
Q 019603 178 -------AGAIKLFDSR---SYDKGPFDTFLVG----G-------DTAEVCDIKFSNDGKSMLLTTTN-NNIYVLDAYGG 235 (338)
Q Consensus 178 -------dg~i~i~d~~---~~~~~~~~~~~~~----~-------~~~~i~~v~~sp~~~~i~~~~~d-~~i~i~~~~~~ 235 (338)
++.+..||+. +... .....+. + .......+...++|+.+++.+.. +.|+.++....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~--~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKP--VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCC--SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccCCCCEEEEEcCCcCCCCCE--EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 6778889987 3322 1111111 1 12347889999999988888888 88888876543
Q ss_pred eeEEEeeeCCC----CCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 236 EKRCGFSLEPS----PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 236 ~~~~~~~~~~~----~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
....+-.... ....+.++++|+|..|+....+|.+..+|+.+...
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~ 218 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA 218 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc
Confidence 3333322211 12356899999999988887799999999985433
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.29 E-value=0.078 Score=46.31 Aligned_cols=185 Identities=12% Similarity=0.193 Sum_probs=110.6
Q ss_pred ceeEEEEccCCeEEEeecCCccceEEEEEcC----CCCE----EEEEEC--CCeEEEEEC--CCcceeeee-----ee--
Q 019603 97 ESLRYLSMYDNRILRYFKGHKERVISLCMSP----VNDS----FMSGSL--DHSVRIWDL--RVNACQGIL-----RL-- 157 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~----~~~~----l~Sgs~--D~~I~iWd~--~~~~~~~~~-----~~-- 157 (338)
+.+.++|+ +++.++.+.. ++++.+.+-| .++. ++|.-. +++|++|++ .++.. ..+ ..
T Consensus 50 ~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l-~~i~~~~~pv~t 125 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL-QSMTDPDHPIAT 125 (355)
T ss_dssp TEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE-EECSCTTSCEEC
T ss_pred CCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce-eeccccccCcCC
Confidence 56899999 7888887764 4566665544 2332 334334 689999966 34432 222 10
Q ss_pred --cCccEEEE--cCC-CC-EEEEEEcCCeEEEEeCCCCCCCCCeeE---EecCCCCceEEEEEcCCCCEEEEEecCCcEE
Q 019603 158 --RGRPTVAF--DQQ-GL-VFAVAMEAGAIKLFDSRSYDKGPFDTF---LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 228 (338)
Q Consensus 158 --~~~~~~~~--~~~-~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~ 228 (338)
....-+++ ++. +. ++.+...+|.+..|++.....+..... .+ .....+-.|.+.+....++++-.+..|+
T Consensus 126 ~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd~~g~Lyv~eEd~GIw 204 (355)
T 3amr_A 126 AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADDEYGRLYIAEEDEAIW 204 (355)
T ss_dssp CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcCCCCeEEEecccceEE
Confidence 11112555 663 44 566777889999988743222111111 11 1234677888998888899999888888
Q ss_pred EEEcc-----CCeeEEEeeeCCCCCCCeeEEE--CCCCC-EEEEEc-CCCcEEEEECC-CCCeEeEee
Q 019603 229 VLDAY-----GGEKRCGFSLEPSPNTNTEATF--TPDGQ-YVVSGS-GDGTLHAWNIN-TRNEVACWN 286 (338)
Q Consensus 229 i~~~~-----~~~~~~~~~~~~~~~~~~~~~f--s~~~~-~l~sgs-~Dg~i~vWd~~-~~~~~~~~~ 286 (338)
.++.. ++..+..+....-...+..+++ .++++ ||+..+ .+.+..|||.. +.+.+..|.
T Consensus 205 ~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 205 KFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 88854 2333322211111124666776 66666 666555 67899999997 667777774
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.21 E-value=0.096 Score=45.74 Aligned_cols=207 Identities=14% Similarity=0.226 Sum_probs=118.1
Q ss_pred EEEeecC---CCEEEEeeCCCcEEEEEcCCCeeEeEEee-cccCeeeE-EEeecCCe--eEEecCccCCCC--CceeEEE
Q 019603 32 SLDFHRK---DDLLVTASDDDSVRLYDIVSAKLIKTTYH-KKHGADCV-CFTHHPSS--VICSTKYNLDST--GESLRYL 102 (338)
Q Consensus 32 ~l~~s~~---~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~--~~~i~~~ 102 (338)
++-.+|. ..+++.....+.+.+||+ +|+.+..+.. ..+++... -|...+.. ++.++ ... .+++.++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as----~R~~~~n~l~vf 104 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAAS----NRSEGKNTIEIY 104 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEE----ECSTTCCEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEe----CCCCCCCeEEEE
Confidence 3444453 346777777889999999 7888877643 11222211 12111211 22222 233 4789999
Q ss_pred Ecc--CCeEEEeecC------Cc-cceEEEEE--cCC-CC-EEEEEECCCeEEEEECC-------CcceeeeeeecCcc-
Q 019603 103 SMY--DNRILRYFKG------HK-ERVISLCM--SPV-ND-SFMSGSLDHSVRIWDLR-------VNACQGILRLRGRP- 161 (338)
Q Consensus 103 ~~~--~~~~~~~~~~------H~-~~V~~l~~--~~~-~~-~l~Sgs~D~~I~iWd~~-------~~~~~~~~~~~~~~- 161 (338)
++. +++ +..+.. .. ..+..+++ +|. ++ +++....++.+..|++. +.+.+..+.+.+.+
T Consensus 105 ~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E 183 (355)
T 3amr_A 105 AIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE 183 (355)
T ss_dssp EECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE
T ss_pred EECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc
Confidence 774 333 444421 11 56677777 674 44 56777888999999983 22445566655433
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCCCeeE-Ee-cCC-CCceEEEEE--cCCCC-EEEEEe-cCCcEEEEEcc-
Q 019603 162 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF-LV-GGD-TAEVCDIKF--SNDGK-SMLLTT-TNNNIYVLDAY- 233 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~-~~~-~~~i~~v~~--sp~~~-~i~~~~-~d~~i~i~~~~- 233 (338)
-+..++....+.++-++..|..+|.+.......... .. .++ ...+..|.+ .++++ |+++++ .++...+|+..
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 366777777888888887776667542211010111 11 121 234666666 56666 666666 46789999986
Q ss_pred CCeeEEEeeeC
Q 019603 234 GGEKRCGFSLE 244 (338)
Q Consensus 234 ~~~~~~~~~~~ 244 (338)
+.+.+..|+.-
T Consensus 264 ~~~~vg~f~Ig 274 (355)
T 3amr_A 264 KNKYVADFRIT 274 (355)
T ss_dssp TCCEEEEEEEC
T ss_pred CCcEEEEEEec
Confidence 45555555443
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.16 Score=46.78 Aligned_cols=219 Identities=11% Similarity=0.099 Sum_probs=126.0
Q ss_pred ceeEEEEccCCeEEEeecC---CccceEEEEE-------cCCCCEEEEEECCC-------eEEEEECCC-ccee-----e
Q 019603 97 ESLRYLSMYDNRILRYFKG---HKERVISLCM-------SPVNDSFMSGSLDH-------SVRIWDLRV-NACQ-----G 153 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~---H~~~V~~l~~-------~~~~~~l~Sgs~D~-------~I~iWd~~~-~~~~-----~ 153 (338)
+.|+++|+.++........ ..+....++| +++++.|+.+...+ .|.+.+... +... .
T Consensus 162 ~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~ 241 (496)
T 3kya_A 162 KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQ 241 (496)
T ss_dssp EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEE
T ss_pred CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccce
Confidence 5688888888776554432 2345889999 99998666555443 366666333 1221 1
Q ss_pred ee-eecCccEEEEcC-CCCEEEEEEcCCeEEEEeCC-------CCCC-CC--------CeeEEecCCCCceEEEEEcCCC
Q 019603 154 IL-RLRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSR-------SYDK-GP--------FDTFLVGGDTAEVCDIKFSNDG 215 (338)
Q Consensus 154 ~~-~~~~~~~~~~~~-~~~~~~~~~~dg~i~i~d~~-------~~~~-~~--------~~~~~~~~~~~~i~~v~~sp~~ 215 (338)
.+ .......++++| ++.++++-...+.|..+|+. .... .+ +..+...+....-..++|+|++
T Consensus 242 ~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G 321 (496)
T 3kya_A 242 LIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTG 321 (496)
T ss_dssp EEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTS
T ss_pred eeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCC
Confidence 22 122334478888 56777778888999999976 3221 00 1122222333446789999999
Q ss_pred CEEEEE-ecCCcEEEEEcc--CCeeE--EEeeeC-CC------------CCCCe-eEEEC-------CCCCEEEEEcCCC
Q 019603 216 KSMLLT-TTNNNIYVLDAY--GGEKR--CGFSLE-PS------------PNTNT-EATFT-------PDGQYVVSGSGDG 269 (338)
Q Consensus 216 ~~i~~~-~~d~~i~i~~~~--~~~~~--~~~~~~-~~------------~~~~~-~~~fs-------~~~~~l~sgs~Dg 269 (338)
+.++++ +..+.|+.++.. .+... ..+... +. ..... .++.. ++|.++++-..+.
T Consensus 322 ~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~ 401 (496)
T 3kya_A 322 KYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF 401 (496)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGT
T ss_pred CEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCC
Confidence 954444 456788886643 22210 112211 10 01223 34443 5667777777888
Q ss_pred cEEEEECCCCCeEeEeeCC------------------------CCceEEEEEcCC-CceEEeecceEEEeeeC
Q 019603 270 TLHAWNINTRNEVACWNGN------------------------IGVVACLKWAPR-RAMFVAASSVLSFWIPN 317 (338)
Q Consensus 270 ~i~vWd~~~~~~~~~~~~h------------------------~~~v~~l~~~p~-~~~l~s~s~~~~iw~~~ 317 (338)
.||.++ .++ .+.++-+. -..-..|++.++ +.++++=+..-+|+++.
T Consensus 402 rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 402 CVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 999998 455 44455332 023568999997 66666544544444444
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.13 E-value=0.11 Score=45.02 Aligned_cols=258 Identities=9% Similarity=0.007 Sum_probs=127.7
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEee----cccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYH----KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
...+.+|.|.+.+..++ ++.++.| +.....|+.-..... ....+..+.+. +...+.... .+ .++
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~--~~~~~~~g~------~g--~i~ 102 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQ--GNEGWIVGE------PP--IML 102 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEE--TTEEEEEEE------TT--EEE
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEec--CCeEEEEEC------CC--eEE
Confidence 45789999988777777 5567754 333333331111111 11223344443 333332211 11 222
Q ss_pred EccC-CeE---EEeecCCccceEEEEEcCCCCEEEEEECCCeE-EEEECCCcceeeeeee---cCccEEEEcCCCCEEEE
Q 019603 103 SMYD-NRI---LRYFKGHKERVISLCMSPVNDSFMSGSLDHSV-RIWDLRVNACQGILRL---RGRPTVAFDQQGLVFAV 174 (338)
Q Consensus 103 ~~~~-~~~---~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I-~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 174 (338)
.-.+ ++. +.....+.+.+..+.+.++++.++.+ .++.| +-+|- ++.-..... .....+.+.+++.++++
T Consensus 103 ~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg--G~tW~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (327)
T 2xbg_A 103 HTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS--GKNWQALVQEAIGVMRNLNRSPSGEYVAV 179 (327)
T ss_dssp EESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST--TSSEEEEECSCCCCEEEEEECTTSCEEEE
T ss_pred EECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC--CCCCEEeecCCCcceEEEEEcCCCcEEEE
Confidence 2222 221 11111244557778777666655554 45544 33342 221111111 11234667788877766
Q ss_pred EEcCCeEEEEeC--CCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC--CCCCCC
Q 019603 175 AMEAGAIKLFDS--RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE--PSPNTN 250 (338)
Q Consensus 175 ~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~--~~~~~~ 250 (338)
+...+..+-.|. .+. ..........+..+.+.|+++.+ +.+.++.+++.....++........ .....+
T Consensus 180 g~~G~~~~S~d~gG~tW------~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~ 252 (327)
T 2xbg_A 180 SSRGSFYSTWEPGQTAW------EPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGF 252 (327)
T ss_dssp ETTSSEEEEECTTCSSC------EEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCE
T ss_pred ECCCcEEEEeCCCCCce------eECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcce
Confidence 644443334442 111 11122334567888899988754 5556677766532223322111111 111246
Q ss_pred eeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee---CCCCceEEEEEcCCCceEEeec
Q 019603 251 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s 308 (338)
..+.+.+++..++.+. +|.| .+..+.++-=..+. .....+.+|.|.+++..++.+.
T Consensus 253 ~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 253 LDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp EEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred EEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence 7888998888777654 6777 34444443323332 2345688999987777666664
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.17 Score=46.47 Aligned_cols=156 Identities=12% Similarity=0.183 Sum_probs=89.3
Q ss_pred ceEEEEEcCC-CC-EEEEEECCCeEEEEECCCcceeeeeeecC-----ccEEEE-------cCCCCEEEEEEcCC-----
Q 019603 119 RVISLCMSPV-ND-SFMSGSLDHSVRIWDLRVNACQGILRLRG-----RPTVAF-------DQQGLVFAVAMEAG----- 179 (338)
Q Consensus 119 ~V~~l~~~~~-~~-~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~~~~~~dg----- 179 (338)
.-..|+|+|. .. .+++-...+.|++.|++.+.....+.... ...++| +++|..+.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568899983 44 44554445789999998776544333221 234788 99998555544332
Q ss_pred --eEEEEeCCC-CCCCC-C-eeEEecCCCCceEEEEEcCCCCEEE-EEecCCcEEEEEcc-------CCee---------
Q 019603 180 --AIKLFDSRS-YDKGP-F-DTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAY-------GGEK--------- 237 (338)
Q Consensus 180 --~i~i~d~~~-~~~~~-~-~~~~~~~~~~~i~~v~~sp~~~~i~-~~~~d~~i~i~~~~-------~~~~--------- 237 (338)
.+.+++... ..... . ...+.. ......+.++|++..|+ +-..++.|+.+|.. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 255665222 01110 0 011111 11234567899655555 45556779999986 4543
Q ss_pred --E-EEeeeCCCCCCCeeEEECCCCCE-EEEEcCCCcEEEEECC
Q 019603 238 --R-CGFSLEPSPNTNTEATFTPDGQY-VVSGSGDGTLHAWNIN 277 (338)
Q Consensus 238 --~-~~~~~~~~~~~~~~~~fs~~~~~-l~sgs~Dg~i~vWd~~ 277 (338)
. ..+.. +.......++|+|+|++ +++-.....|+.++..
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1 11222 22234678999999995 4555677789987654
No 294
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.89 E-value=0.17 Score=43.10 Aligned_cols=229 Identities=10% Similarity=0.063 Sum_probs=107.6
Q ss_pred EEEEeeC--CCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEE--eecCC
Q 019603 41 LLVTASD--DDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILR--YFKGH 116 (338)
Q Consensus 41 ~l~s~s~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~H 116 (338)
+++.||. ...+.+||..+.+...............+.. ....+++..... ...-..+..+|..+.+... .+..-
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455554 3678899998877543211111111111112 233444333222 1122467788887765332 22211
Q ss_pred ccceEEEEEcCCCCEEEEEECC------CeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEc---------CC
Q 019603 117 KERVISLCMSPVNDSFMSGSLD------HSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAME---------AG 179 (338)
Q Consensus 117 ~~~V~~l~~~~~~~~l~Sgs~D------~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------dg 179 (338)
...-..+.+ +++.++.||.+ ..+.+||+.+++-...-..... ...+...++.+++.|+. -.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 111122222 56777888876 5688999877643221111110 01112235556665542 34
Q ss_pred eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEEccCCeeEEEeeeCCCCCCCeeEE
Q 019603 180 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 254 (338)
Q Consensus 180 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (338)
.+..||..+......... ... ...-..+.+ +++.++.++.+ +.+.+||..+++....-...........+.
T Consensus 170 ~~~~yd~~~~~W~~~~~~-p~~-r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPM-IEA-RKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CEEEEETTTTEEEEECCC-SSC-CBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred eEEEeCCCCCeEEECCCc-cch-hhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 477777654321100000 000 011112222 56666676653 468899988776544322221111222223
Q ss_pred ECCCCCEEEEEcCC-----CcEEEEECCCC
Q 019603 255 FTPDGQYVVSGSGD-----GTLHAWNINTR 279 (338)
Q Consensus 255 fs~~~~~l~sgs~D-----g~i~vWd~~~~ 279 (338)
+ +++.++.|+.+ ..+.+||..+.
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 3 67788888754 45788888763
No 295
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.86 E-value=0.18 Score=42.91 Aligned_cols=232 Identities=12% Similarity=0.123 Sum_probs=106.5
Q ss_pred CCEEEEeeCC----CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEE--e
Q 019603 39 DDLLVTASDD----DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILR--Y 112 (338)
Q Consensus 39 ~~~l~s~s~D----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~ 112 (338)
+.+++.||.+ ..+.+||+.+.+.................. .+..+++.....-...-..+..+|..+.+... .
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 3455556543 458889998876433211111111111111 23444433321111112457788887665332 2
Q ss_pred ecCCccceEEEEEcCCCCEEEEEECCC-----eEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEc-------C
Q 019603 113 FKGHKERVISLCMSPVNDSFMSGSLDH-----SVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAME-------A 178 (338)
Q Consensus 113 ~~~H~~~V~~l~~~~~~~~l~Sgs~D~-----~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------d 178 (338)
+......-..+.+ +++.++.||.++ .+.+||+.+++-...-..... ...+...++.+++.|+. -
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEEC
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccc
Confidence 2211111122222 567777887663 577889876643221111111 01111224556666543 2
Q ss_pred CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEEccCCeeEEEeeeCCCCCCCeeE
Q 019603 179 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEA 253 (338)
Q Consensus 179 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 253 (338)
..+..||..+......... ... ...-..+.+ +++.++.++.+ +.+.+||..+++....-......... .
T Consensus 173 ~~~~~yd~~~~~W~~~~~~-p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~ 246 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEM-STR-RSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA--G 246 (302)
T ss_dssp CCEEEEETTTTEEEEECCC-SSC-CBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC--E
T ss_pred cEEEEEeCCCCcEEECCCC-ccc-cccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC--e
Confidence 3477788654321100000 000 011122222 56677777654 46889998877655432221111111 1
Q ss_pred EECCCCCEEEEEcCCC-----cEEEEECCCC
Q 019603 254 TFTPDGQYVVSGSGDG-----TLHAWNINTR 279 (338)
Q Consensus 254 ~fs~~~~~l~sgs~Dg-----~i~vWd~~~~ 279 (338)
+...+++.++.|+.++ .+.+||..+.
T Consensus 247 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 247 VCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2223677777777654 3777777653
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.86 E-value=0.17 Score=42.86 Aligned_cols=233 Identities=9% Similarity=0.079 Sum_probs=108.9
Q ss_pred CCCEEEEee-CC-----CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCe---
Q 019603 38 KDDLLVTAS-DD-----DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNR--- 108 (338)
Q Consensus 38 ~~~~l~s~s-~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 108 (338)
++.+++.|| .+ ..+.+||+.+.+................... ...+++.....-...-..+..+|..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 345666666 33 4688999988764332111111111111222 3344433221111112457888887654
Q ss_pred E--EEeecCCccceEEEEEcCCCCEEEEEECC-----CeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEcC-
Q 019603 109 I--LRYFKGHKERVISLCMSPVNDSFMSGSLD-----HSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEA- 178 (338)
Q Consensus 109 ~--~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D-----~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d- 178 (338)
. +..+......-..+.+ +++.++.||.+ ..+.+||+.+++-...-..... ...+...++.+++.|+.+
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 170 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG 170 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC
Confidence 2 2222221112222222 56677777754 3688899877653222111111 011122256666666543
Q ss_pred ----CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 179 ----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 179 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
..+..||..+......... ......-..+.+ +++.++.++.+ +.+.+||..+++....-........
T Consensus 171 ~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 171 LNILNSVEKYDPHTGHWTNVTPM--ATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp SCBCCCEEEEETTTTEEEEECCC--SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CcccceEEEEeCCCCcEEeCCCC--CcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 4577777654321100000 000011122222 56666777664 5689999888766543222211111
Q ss_pred CeeEEECCCCCEEEEEcCC-----CcEEEEECCCC
Q 019603 250 NTEATFTPDGQYVVSGSGD-----GTLHAWNINTR 279 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~D-----g~i~vWd~~~~ 279 (338)
.. +...+++.++.|+.+ ..|.+||..+.
T Consensus 247 ~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 247 VG--ATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CE--EEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ee--EEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 12 222367777777765 35778887653
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.85 E-value=0.34 Score=46.10 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=126.4
Q ss_pred ceeEEEEccCCeEEEeec-CCccceEEEEEcCCCCE-EEEEECCCeEEEEECCCcceeeeeee--cCccEEEEcCCC-CE
Q 019603 97 ESLRYLSMYDNRILRYFK-GHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQG-LV 171 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~-~H~~~V~~l~~~~~~~~-l~Sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~~-~~ 171 (338)
..|+..++.+.+....+. ..-..+..++|++.+.. +++-..++.|+.+++........+.. ....-+++++.+ .+
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L 94 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL 94 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence 667788877554332221 23456789999986554 56666789999999865433222222 123357888654 45
Q ss_pred EEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec--CCcEEEEEccCCeeEEEeeeCCCCCC
Q 019603 172 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNT 249 (338)
Q Consensus 172 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~ 249 (338)
+.+....+.|.+.++.... ...+....-.....+++.|...+++.+.. .+.|...++.......... .-..
T Consensus 95 Y~tD~~~~~I~v~~~dG~~----~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~---~~~~ 167 (628)
T 4a0p_A 95 YWADTGTNRIEVSKLDGQH----RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGR 167 (628)
T ss_dssp EEEETTTTEEEEEETTSTT----CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SCSS
T ss_pred EEEECCCCEEEEEecCCCc----EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC---CCCC
Confidence 5666667888888865321 12233233345678999996666665542 4678888876544333222 2345
Q ss_pred CeeEEECCCCCEEEEE-cCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEEeeeC
Q 019603 250 NTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 317 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~iw~~~ 317 (338)
...++++++++.|+-+ ...+.|...++..... ..+........+|++.. +.++++-...-.|+..+
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 6789999976665554 5678899999975444 34443344456788766 34444432333444444
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.81 E-value=0.21 Score=43.11 Aligned_cols=235 Identities=11% Similarity=0.155 Sum_probs=133.1
Q ss_pred EEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeE-EecCccCCCCCceeEEEEccC-CeE
Q 019603 32 SLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVI-CSTKYNLDSTGESLRYLSMYD-NRI 109 (338)
Q Consensus 32 ~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~ 109 (338)
+.-.+|..+.++--. ..+++++|++++..+++.... ..+.+..| -....+ .. ++..+..|++++ ..+
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkW--is~~~L~lV-------T~taVyHWs~~~~s~P 139 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKW--ISLNTVALV-------TDNAVYHWSMEGESQP 139 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEE--CSSSEEEEE-------ESSEEEEEESSTTCCC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEe--cCCCeEEEE-------cCCcEEEEcccCCCCC
Confidence 344678777666554 688999999999888765543 34444444 333222 22 237899999874 456
Q ss_pred EEeecCCc----cceEEEEEcCCCCEEEEEE-------CCCeEEEEECCCcceeeeeeecCccEEEEcCCC-----CEEE
Q 019603 110 LRYFKGHK----ERVISLCMSPVNDSFMSGS-------LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG-----LVFA 173 (338)
Q Consensus 110 ~~~~~~H~----~~V~~l~~~~~~~~l~Sgs-------~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 173 (338)
.+.+.-|. ..|.....+++.++++-.| -.|.+.+|..+.+... .++.|...-..+-.+| .++.
T Consensus 140 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieGhaa~F~~~~~~g~~~~~~lf~ 218 (365)
T 2xzh_A 140 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFC 218 (365)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EECCSEEEEEEECCTTCSSCEEEEE
T ss_pred ceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc-eeeeeeeeeEEEecCCCCCCceEEE
Confidence 66666553 4677788889999765333 2377788887655321 1222111111111111 1333
Q ss_pred EEEc---CCeEEEEeCCCC--CCCCCeeEE----e--cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEee
Q 019603 174 VAME---AGAIKLFDSRSY--DKGPFDTFL----V--GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 242 (338)
Q Consensus 174 ~~~~---dg~i~i~d~~~~--~~~~~~~~~----~--~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~ 242 (338)
.+.. -+++++.++... ...++.... . +....--.++..++.-..+...+..|.++++|++++..+..-+
T Consensus 219 fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 219 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp EEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec
Confidence 3322 258888887443 122222111 0 1112234457788877788999999999999999998765444
Q ss_pred eCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 243 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 243 ~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
... ..+...+.+....-++.....|.|.--.+++.+
T Consensus 299 IS~--d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 299 ISG--ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp CCS--SCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred cCC--CceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 332 333333333333444444456655555554443
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.72 E-value=0.009 Score=57.83 Aligned_cols=198 Identities=10% Similarity=0.036 Sum_probs=107.4
Q ss_pred CceeEEEEccCCeEEEeecCCccceEEEEEcCCCCEE-EEEECCCeEEEEECCC----cceeeeee--ecCccEEEEcC-
Q 019603 96 GESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRV----NACQGILR--LRGRPTVAFDQ- 167 (338)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~----~~~~~~~~--~~~~~~~~~~~- 167 (338)
...|+..++.+.+....+.. ...+.+++|++.+..| ++-...+.|+.+++.. ......+. +.....+++++
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35677777766655444333 3456788999866554 4555678999999864 12111111 11122366774
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec--CCcEEEEEccCCeeEEEeeeCC
Q 019603 168 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEP 245 (338)
Q Consensus 168 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~--d~~i~i~~~~~~~~~~~~~~~~ 245 (338)
.+.++++....+.|.++++... ....++.........++++|.+.+|+.+.. .+.|.++++...... .+. ..
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~----~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~-~~ 537 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGV----KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV-TE 537 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSC----CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EES-CS
T ss_pred CCcEEEEeccCCeEEEEecCCC----ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEE-eC
Confidence 4455555556678888886531 112222222233456788887665554443 267877776433221 111 11
Q ss_pred CCCCCeeEEECCCCC-EEEEEcCCCcEEEEECCCCCeEeEee--CCCCceEEEEEcCC
Q 019603 246 SPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPR 300 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~-~l~sgs~Dg~i~vWd~~~~~~~~~~~--~h~~~v~~l~~~p~ 300 (338)
.......++|+|++. ++++-+..+.|+++++........+. .......+|++..+
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~ 595 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 595 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC
Confidence 123456799998755 45555677889999997533332222 11233345666554
No 300
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.53 E-value=0.29 Score=41.74 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=106.0
Q ss_pred cCCCEEEEeeCC----CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCcc----CCCCCceeEEEEccCCe
Q 019603 37 RKDDLLVTASDD----DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYN----LDSTGESLRYLSMYDNR 108 (338)
Q Consensus 37 ~~~~~l~s~s~D----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~ 108 (338)
-++.+++-||.+ ..+.+||..+.+.................. ....+++..... -...-..+..+|..+.+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 356666777642 468899998877543211111001111111 233343332210 00011356778877665
Q ss_pred EEEe--ecCCccceEEEEEcCCCCEEEEEECC-----CeEEEEECCCcceeeeeeecC---ccEEEEcCCCCEEEEEEcC
Q 019603 109 ILRY--FKGHKERVISLCMSPVNDSFMSGSLD-----HSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEA 178 (338)
Q Consensus 109 ~~~~--~~~H~~~V~~l~~~~~~~~l~Sgs~D-----~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d 178 (338)
.... +..-...-..+.+ +++.++.||.+ ..+.+||+.+++-...-.... ...... .++.+++.|+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 178 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFD 178 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeCCC
Confidence 3322 2111111122222 56677777654 468889987664221111111 111211 255666666543
Q ss_pred -----CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEEccCCeeEEEeeeCCCCC
Q 019603 179 -----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPN 248 (338)
Q Consensus 179 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~ 248 (338)
..+..||..+......... ......-..+.+ +++.++.++.+ +.+.+||..+++....-.......
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAM--NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCC--SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCcCceEEEEeCCCCeEeeCCCC--CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 4577777654321100000 000111122223 56667777664 568999988776554222211111
Q ss_pred CCeeEEECCCCCEEEEEcCCC-----cEEEEECCC
Q 019603 249 TNTEATFTPDGQYVVSGSGDG-----TLHAWNINT 278 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~Dg-----~i~vWd~~~ 278 (338)
.. .++. -+++.++.|+.++ .+.+||..+
T Consensus 255 ~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 255 AL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp SC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 11 2222 3667777777543 466777654
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.42 E-value=0.36 Score=40.88 Aligned_cols=184 Identities=13% Similarity=0.110 Sum_probs=90.4
Q ss_pred CCCEEEEEECC-----CeEEEEECCCcc---eeeeeeecC---ccEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCCC
Q 019603 128 VNDSFMSGSLD-----HSVRIWDLRVNA---CQGILRLRG---RPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDK 191 (338)
Q Consensus 128 ~~~~l~Sgs~D-----~~I~iWd~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~ 191 (338)
+++.++.||.+ ..+.+||+.+++ -...-.... ..... ..++.+++.|+.+ ..+.+||..+...
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT-TLGDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE-EECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 56677788865 468999987765 221111111 11122 2256666666533 3577788654321
Q ss_pred CCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEc
Q 019603 192 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 192 ~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs 266 (338)
..... .......-..+.+ +++.++.++.+ +.+.++|..+++....-.......... +...+++.++.|+
T Consensus 141 ~~~~~--~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG 214 (301)
T 2vpj_A 141 SMLGD--MQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAG--VALLNDHIYVVGG 214 (301)
T ss_dssp EEEEE--CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECC
T ss_pred EECCC--CCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccce--EEEECCEEEEEeC
Confidence 11100 0000111112222 56667777654 468899988776654322211111112 2223677777777
Q ss_pred CC-----CcEEEEECCCCC--eEeEeeCCCCceEEEEEcCCCceEEeecc-----eEEEeeeCCCC
Q 019603 267 GD-----GTLHAWNINTRN--EVACWNGNIGVVACLKWAPRRAMFVAASS-----VLSFWIPNPSS 320 (338)
Q Consensus 267 ~D-----g~i~vWd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----~~~iw~~~~~~ 320 (338)
.+ ..+.+||..+.+ .+..+........++.+ ++.+++.|+. .-.+|.+++..
T Consensus 215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 64 468999998653 22222211112222322 5666676652 13466666543
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.40 E-value=0.44 Score=41.75 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=41.6
Q ss_pred CCeeEEEC-------CCCCEEEEEcCCCcEEEEECCCC-CeE--eEe-eCCCCceEEEEEcCCCceEEeec
Q 019603 249 TNTEATFT-------PDGQYVVSGSGDGTLHAWNINTR-NEV--ACW-NGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 249 ~~~~~~fs-------~~~~~l~sgs~Dg~i~vWd~~~~-~~~--~~~-~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
....++|. .+|.++++.-..+.|...++... +.. ..+ .+..+.+..+++.||+.++++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 34567773 57778877777788888888753 222 233 23346789999999998877764
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.36 E-value=0.73 Score=43.75 Aligned_cols=274 Identities=8% Similarity=0.050 Sum_probs=137.9
Q ss_pred cceeEEEeecCCC-EEEEeeCCCcEEEEEcCCCeeEeEEe-ecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEcc
Q 019603 28 GKINSLDFHRKDD-LLVTASDDDSVRLYDIVSAKLIKTTY-HKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMY 105 (338)
Q Consensus 28 ~~V~~l~~s~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (338)
....++++.+.+. +.++-...+.|.+.++.... .+.+. ........+++.+....++.+. ++ ....|...++.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD-~g---~~~~I~r~~~d 158 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTD-WG---EVPKIERAGMD 158 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEEE-CS---SSCEEEEEETT
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEec-cC---CCCEEEEEECC
Confidence 4678999998655 44555567889999987443 22222 2223344555655444444432 11 12455555554
Q ss_pred CCeEEEeecCCccceEEEEEcCCCCEE-EEEECCCeEEEEECCCcceeeeee--ecCccEEEEcCCCCEEEEEEcCCeEE
Q 019603 106 DNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 106 ~~~~~~~~~~H~~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~ 182 (338)
...........-..-.+|+++++++.| ++=+..+.|...|+.......... ......+++..+ .++.+-...+.|.
T Consensus 159 G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~ 237 (619)
T 3s94_A 159 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSIL 237 (619)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEE
T ss_pred CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEE
Confidence 333322233334567889999876554 455566788888885433222111 111123455544 4444555566777
Q ss_pred EEeCCCCCC---------CCCeeEEec------CC---------CCce----------EEEE-----EcCC-------CC
Q 019603 183 LFDSRSYDK---------GPFDTFLVG------GD---------TAEV----------CDIK-----FSND-------GK 216 (338)
Q Consensus 183 i~d~~~~~~---------~~~~~~~~~------~~---------~~~i----------~~v~-----~sp~-------~~ 216 (338)
..|..+... .+....... +. ...+ .|.+ +.++ .+
T Consensus 238 ~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~ 317 (619)
T 3s94_A 238 ACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGAT 317 (619)
T ss_dssp EEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCS
T ss_pred EEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCc
Confidence 776543211 111111110 00 0001 1100 1112 12
Q ss_pred EEEEEecCCcEEEEEccCCeeEE-EeeeCCCCCCCeeEEECCCCCE-EEEEcCCCcEEEEECCCCCeEeEeeCCCCceEE
Q 019603 217 SMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQY-VVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC 294 (338)
Q Consensus 217 ~i~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~fs~~~~~-l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~ 294 (338)
.++.-+..+.|+..++..+.... .+... .......++|++.+.. +++-...+.|+.++.........+....+...+
T Consensus 318 ~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~G 396 (619)
T 3s94_A 318 ELLLLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDG 396 (619)
T ss_dssp EEEEEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred eEEEEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCc
Confidence 23333445566666665442211 11111 1234567899985554 445566889999999765444444444467789
Q ss_pred EEEcCCCceEEeec
Q 019603 295 LKWAPRRAMFVAAS 308 (338)
Q Consensus 295 l~~~p~~~~l~s~s 308 (338)
|++.+.+..|..++
T Consensus 397 lAvD~~~~~lY~tD 410 (619)
T 3s94_A 397 IAVDWVARNLYWTD 410 (619)
T ss_dssp EEEETTTTEEEEEE
T ss_pred eEEecccCcEEEEe
Confidence 99997555444443
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.34 E-value=0.74 Score=43.70 Aligned_cols=227 Identities=11% Similarity=0.069 Sum_probs=119.6
Q ss_pred CCcEEEEEcCCCe-eEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeE-EEeecCCccceEEEEE
Q 019603 48 DDSVRLYDIVSAK-LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRI-LRYFKGHKERVISLCM 125 (338)
Q Consensus 48 D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~H~~~V~~l~~ 125 (338)
.+.|+.-|+.... ..............+.+......++.+. ...+.|..+++..... ...+..--....++++
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD-----~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD-----VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEE-----CCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 4667777776432 1111122223344555655555554432 2236777777765432 2223333356889999
Q ss_pred cCCCC-EEEEEECCCeEEEEECCCcceeeee--eecCccEEEEcCC-CCEEEEEEc-CCeEEEEeCCCCCCCCCeeEEec
Q 019603 126 SPVND-SFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTVAFDQQ-GLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVG 200 (338)
Q Consensus 126 ~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~ 200 (338)
.+.++ .+++-...+.|.+.|+........+ .+.....++++|. |.++.+... .+.|...++... ....+..
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~----~~~~l~~ 167 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS----SRFIIIN 167 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC----SCEEEEC
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC----ceEEEEe
Confidence 98655 5566667899999998654332222 1223345888886 445555432 355655554321 1122222
Q ss_pred CCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 201 GDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 201 ~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
..-.....+.++|+++.++.+ +..+.|..++........... ........+++..+ ..+++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 233456789999876655555 456788888876543322211 11123346777655 45556567788999998877
Q ss_pred CeEeEee
Q 019603 280 NEVACWN 286 (338)
Q Consensus 280 ~~~~~~~ 286 (338)
+....+.
T Consensus 245 ~~~~~i~ 251 (619)
T 3s94_A 245 EGLREIH 251 (619)
T ss_dssp CCCEECC
T ss_pred cccEEEe
Confidence 6554443
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.30 E-value=0.44 Score=41.82 Aligned_cols=128 Identities=9% Similarity=0.068 Sum_probs=67.1
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecC-----CCCceEEEEEcC--CCC-EEEEEe-c--CCcEEEEEccC--CeeEEEeee
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGG-----DTAEVCDIKFSN--DGK-SMLLTT-T--NNNIYVLDAYG--GEKRCGFSL 243 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~i~~v~~sp--~~~-~i~~~~-~--d~~i~i~~~~~--~~~~~~~~~ 243 (338)
.+|.|.++|...... ....+.+.+ .......+.+.+ ++. +++++. . +..+.+|+... +.....-..
T Consensus 81 ~~G~I~~~d~~~~~~-~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEP-AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSC-CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCC-ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 577788888653211 111222222 122344455544 454 344443 2 34566766543 222222222
Q ss_pred CCC-CCCCeeEEECCCCCEEEEEc-----------------CCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEE
Q 019603 244 EPS-PNTNTEATFTPDGQYVVSGS-----------------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 244 ~~~-~~~~~~~~fs~~~~~l~sgs-----------------~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 305 (338)
.+. ....+++.+.++|.+.++.. ..|.|+.++- ++. ..+...-..-+.|+|+||++.|.
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lY 236 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVY 236 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEE
Confidence 222 24567899999999888765 1244555554 333 23322335678999999998777
Q ss_pred eec
Q 019603 306 AAS 308 (338)
Q Consensus 306 s~s 308 (338)
.++
T Consensus 237 vad 239 (355)
T 3sre_A 237 IAE 239 (355)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.25 E-value=0.54 Score=41.14 Aligned_cols=230 Identities=13% Similarity=0.147 Sum_probs=109.7
Q ss_pred eeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeE--eEEe---ecccCeeeEEEeec---CCeeEEecCccCCCCCceeEE
Q 019603 30 INSLDFHRKDDLLVTASDDDSVRLYDIVSAKLI--KTTY---HKKHGADCVCFTHH---PSSVICSTKYNLDSTGESLRY 101 (338)
Q Consensus 30 V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~--~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~ 101 (338)
-.+++|.|+|+++++ ..++.|++++ .++.. ..+. .......-++++++ ...++.+...........|..
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 468999999996655 5569999998 44421 1111 01123344555443 234443322100000134555
Q ss_pred EEccCCe------EEEeec---CCccceEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCc----------
Q 019603 102 LSMYDNR------ILRYFK---GHKERVISLCMSPVNDSFMSGSL-------------DHSVRIWDLRVN---------- 149 (338)
Q Consensus 102 ~~~~~~~------~~~~~~---~H~~~V~~l~~~~~~~~l~Sgs~-------------D~~I~iWd~~~~---------- 149 (338)
++...+. .+..+. +.......+.|.|++...++-+. .+.|..+|....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 6554331 112232 11123357899999986666432 256666665320
Q ss_pred --ceeeeeee--cCccEEEEcC-CCCEEEEEEcCCe--------EEEEeCCC-CC-------------CCCCeeEEecCC
Q 019603 150 --ACQGILRL--RGRPTVAFDQ-QGLVFAVAMEAGA--------IKLFDSRS-YD-------------KGPFDTFLVGGD 202 (338)
Q Consensus 150 --~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~dg~--------i~i~d~~~-~~-------------~~~~~~~~~~~~ 202 (338)
.....+.. ....-++|+| ++.++++-...+. +.+..... +. ..+. ... ..
T Consensus 190 ~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~--~~~-~~ 266 (352)
T 2ism_A 190 RGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL--YFW-PQ 266 (352)
T ss_dssp TTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS--EEC-TT
T ss_pred CCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe--Eec-CC
Confidence 01111111 1112378898 6776666544333 44332111 00 0111 111 12
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe----eEEEeeeCCCCCCCeeEEECCCCCEEEEEc
Q 019603 203 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE----KRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 203 ~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs 266 (338)
......+.| .+|..++.....+.|..++..... .............+..+++.|||.++++..
T Consensus 267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 223456666 456655555556677777654322 100111111224578899999998776653
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.18 E-value=0.5 Score=40.09 Aligned_cols=202 Identities=11% Similarity=0.073 Sum_probs=96.3
Q ss_pred ceeEEEEccCCeEEEe--ecCCccceEEEEEcCCCCEEEEEECC----CeEEEEECCCcceeeeeeecCc--cEEEEcCC
Q 019603 97 ESLRYLSMYDNRILRY--FKGHKERVISLCMSPVNDSFMSGSLD----HSVRIWDLRVNACQGILRLRGR--PTVAFDQQ 168 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~--~~~H~~~V~~l~~~~~~~~l~Sgs~D----~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~ 168 (338)
..+..+|..+++-... +......-..+. .+++.++.||.+ ..+.+||+.+++-...-.+... ...+...+
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 101 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAE 101 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEET
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEEC
Confidence 5677777776553321 111111112222 256677788865 7788999887653222111111 01111225
Q ss_pred CCEEEEEEcC------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec---------CCcEEEEEcc
Q 019603 169 GLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---------NNNIYVLDAY 233 (338)
Q Consensus 169 ~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~---------d~~i~i~~~~ 233 (338)
+.+++.|+.+ ..+..||..+......... .... ..-..+.+ +++.++.++. .+.+.+||..
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM-LTQR-CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC-SSCC-BSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC-cCCc-ceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 5666666544 4577778654321000000 0000 11111222 5666666654 3558899988
Q ss_pred CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC-----CcEEEEECCCC--CeEeEeeCCCCceEEEEEcCCCceEEe
Q 019603 234 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINTR--NEVACWNGNIGVVACLKWAPRRAMFVA 306 (338)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D-----g~i~vWd~~~~--~~~~~~~~h~~~v~~l~~~p~~~~l~s 306 (338)
+.+....-......... .++ .-+++.++.|+.+ ..+.+||..+. ..+..+........++.+ ++.+++.
T Consensus 178 ~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 253 (306)
T 3ii7_A 178 TETWTELCPMIEARKNH-GLV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL 253 (306)
T ss_dssp TTEEEEECCCSSCCBSC-EEE-EETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred CCeEEECCCccchhhcc-eEE-EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence 77654432221111111 222 2267777777654 35889998764 223223222222233333 5667777
Q ss_pred ec
Q 019603 307 AS 308 (338)
Q Consensus 307 ~s 308 (338)
|+
T Consensus 254 GG 255 (306)
T 3ii7_A 254 AG 255 (306)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.15 E-value=0.7 Score=41.55 Aligned_cols=237 Identities=12% Similarity=0.157 Sum_probs=137.2
Q ss_pred EEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC-CeEE
Q 019603 32 SLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD-NRIL 110 (338)
Q Consensus 32 ~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 110 (338)
+.-.+|..+.++-=. ..++.|+|+++...+++.... ..+.+..|-. +..+... ++..+.-|++++ ..+.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis-~~~l~lV-------T~taVyHWsi~~~s~P~ 139 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS-LNTVALV-------TDNAVYHWSMEGESQPV 139 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEE-TTEEEEE-------CSSEEEEEESSSSCCCE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecC-CCeEEEE-------cCCeeEEecccCCCCch
Confidence 345677777666544 689999999999888775543 3455544432 2222222 237899999974 4566
Q ss_pred EeecCCc----cceEEEEEcCCCCEEEEEE-------CCCeEEEEECCCcceeeeeeecCccEEEEcCCC-----CEEEE
Q 019603 111 RYFKGHK----ERVISLCMSPVNDSFMSGS-------LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG-----LVFAV 174 (338)
Q Consensus 111 ~~~~~H~----~~V~~l~~~~~~~~l~Sgs-------~D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 174 (338)
+.|.-|. ..|.....+++.++++-.| -.|.+.+|....+... .+..|...-..+-.+| .++..
T Consensus 140 kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieGhaa~F~~~~~~g~~~~~~lf~f 218 (494)
T 1bpo_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCF 218 (494)
T ss_dssp EEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred hheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hheeeeeeeEEEecCCCCCCceEEEE
Confidence 6666553 4677888899999865333 2477888887655321 1222111111111111 23333
Q ss_pred EEcC---CeEEEEeCCCC--CCCCCeeEEe------cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee
Q 019603 175 AMEA---GAIKLFDSRSY--DKGPFDTFLV------GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 243 (338)
Q Consensus 175 ~~~d---g~i~i~d~~~~--~~~~~~~~~~------~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~ 243 (338)
+... +++++.++... ...++..... .....--.++..++.-..+...+..|.++++|+.++..+..-+.
T Consensus 219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 3332 78888887542 1122221111 11122344678888888899999999999999999987654443
Q ss_pred CCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCCe
Q 019603 244 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 281 (338)
Q Consensus 244 ~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~ 281 (338)
. ...+...+.+....-++.....|.|.--.+++...
T Consensus 299 s--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 299 S--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp C--SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred c--CCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 3 23343344444444555555666666555555443
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.15 E-value=0.53 Score=40.16 Aligned_cols=229 Identities=10% Similarity=0.091 Sum_probs=102.8
Q ss_pred EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccC--CCC----CceeEEEEccCCeEEEe--
Q 019603 41 LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNL--DST----GESLRYLSMYDNRILRY-- 112 (338)
Q Consensus 41 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~i~~~~~~~~~~~~~-- 112 (338)
+++.|+ ..+.+||..+++....-.....+-...+.......+++...... ... ...+..+|..+++-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 444555 57899999988754311111101111111122333333222100 000 12366777776654321
Q ss_pred ecCCccceEEEEEcCCCCEEEEEECC--------CeEEEEECCCcceeeeeeecCc--cEEEEcCCCCEEEEEEc-----
Q 019603 113 FKGHKERVISLCMSPVNDSFMSGSLD--------HSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAME----- 177 (338)
Q Consensus 113 ~~~H~~~V~~l~~~~~~~~l~Sgs~D--------~~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----- 177 (338)
+......-..+.+ +++.++.||.+ ..+.+||+.+++=...-..... ...+...++.+++.|+.
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRK 162 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCc
Confidence 1111111111222 56667777743 5688899877642211111111 11122234556666654
Q ss_pred -CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCC-----cEEEEEccCCeeEEEeeeCCCCCCCe
Q 019603 178 -AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSPNTNT 251 (338)
Q Consensus 178 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~~ 251 (338)
-..+..||..+......... ... ...-..+.+ +++.++.++.++ .+.++|..+++....-..........
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~-p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPM-QTA-RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCC-SSC-CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred ccceEEEEeCCCCeEEECCCC-CCc-hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 24577788664321100000 000 011112222 667777777654 58888988776554322211111112
Q ss_pred eEEECCCCCEEEEEcCCC--------------cEEEEECCCC
Q 019603 252 EATFTPDGQYVVSGSGDG--------------TLHAWNINTR 279 (338)
Q Consensus 252 ~~~fs~~~~~l~sgs~Dg--------------~i~vWd~~~~ 279 (338)
.+ .-+++.++.|+.++ .+.+||..+.
T Consensus 239 ~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 239 LV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EE--EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 22 23667777777542 3667777654
No 310
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.14 E-value=0.34 Score=42.38 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=23.4
Q ss_pred CccceEEEEEcCCCCEEEEEECCCeEEEEECCCc
Q 019603 116 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN 149 (338)
Q Consensus 116 H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~ 149 (338)
--..-+.++|.|+++.+++--..|.|++++...+
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 3445678888888887776555788887765443
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.01 E-value=0.16 Score=44.54 Aligned_cols=102 Identities=16% Similarity=0.264 Sum_probs=55.1
Q ss_pred ceEEEEEcCC---CCEEEEEec-C-----CcEEEEEccCCe---eEEEee-eC---CCCCCCeeEEECCCCCEEEEEcCC
Q 019603 205 EVCDIKFSND---GKSMLLTTT-N-----NNIYVLDAYGGE---KRCGFS-LE---PSPNTNTEATFTPDGQYVVSGSGD 268 (338)
Q Consensus 205 ~i~~v~~sp~---~~~i~~~~~-d-----~~i~i~~~~~~~---~~~~~~-~~---~~~~~~~~~~fs~~~~~l~sgs~D 268 (338)
....++++|+ +..+.++.. . +.|..++...+. ....+. .. ........++|.|||.+.++.+..
T Consensus 76 ~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~ 155 (352)
T 2ism_A 76 GLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEV 155 (352)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCT
T ss_pred CceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCC
Confidence 4667889998 555544433 2 567777765431 111122 11 111234579999999877774421
Q ss_pred -------------CcEEEEECCCC------------CeEeEe-eCCCCceEEEEEcC-CCceEEee
Q 019603 269 -------------GTLHAWNINTR------------NEVACW-NGNIGVVACLKWAP-RRAMFVAA 307 (338)
Q Consensus 269 -------------g~i~vWd~~~~------------~~~~~~-~~h~~~v~~l~~~p-~~~~l~s~ 307 (338)
|.|.-++.... .....+ .+| ...+.++|+| ++.++++-
T Consensus 156 ~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 156 YERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred CCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence 45555555420 111122 233 3357799999 66666553
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.92 E-value=0.35 Score=42.40 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=33.9
Q ss_pred CeeEEECCCCCEEEEEcCC-------------CcEEEEECCCC------------CeEeEe-eCCCCceEEEEEcC-CCc
Q 019603 250 NTEATFTPDGQYVVSGSGD-------------GTLHAWNINTR------------NEVACW-NGNIGVVACLKWAP-RRA 302 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~D-------------g~i~vWd~~~~------------~~~~~~-~~h~~~v~~l~~~p-~~~ 302 (338)
...++|.|||.++++.+.. |.|.-.+.... .....+ .+| ...+.++|+| ++.
T Consensus 132 ~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~ 210 (353)
T 2g8s_A 132 GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA 210 (353)
T ss_dssp CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE
T ss_pred CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC
Confidence 3569999999766665432 45666665421 012222 234 3468899999 666
Q ss_pred eEEe
Q 019603 303 MFVA 306 (338)
Q Consensus 303 ~l~s 306 (338)
++++
T Consensus 211 l~~~ 214 (353)
T 2g8s_A 211 LWLN 214 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.89 E-value=0.45 Score=41.72 Aligned_cols=101 Identities=12% Similarity=0.234 Sum_probs=54.3
Q ss_pred ceEEEEEcCC---CCEEEEEec----C----CcEEEEEccCC--e---eEEEee-eC-CCCCCCeeEEECCCCCEEEEEc
Q 019603 205 EVCDIKFSND---GKSMLLTTT----N----NNIYVLDAYGG--E---KRCGFS-LE-PSPNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 205 ~i~~v~~sp~---~~~i~~~~~----d----~~i~i~~~~~~--~---~~~~~~-~~-~~~~~~~~~~fs~~~~~l~sgs 266 (338)
....++++|+ +..+.++.. + +.|..++...+ . ....+. .. ........++|.|||.++++.+
T Consensus 74 g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 74 GLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred ceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 4667888887 444544433 2 56777775543 1 111111 11 1111245799999998877754
Q ss_pred CC-------------CcEEEEECCCCC--------eEeEe-eCCCCceEEEEEcC-CCceEEee
Q 019603 267 GD-------------GTLHAWNINTRN--------EVACW-NGNIGVVACLKWAP-RRAMFVAA 307 (338)
Q Consensus 267 ~D-------------g~i~vWd~~~~~--------~~~~~-~~h~~~v~~l~~~p-~~~~l~s~ 307 (338)
.. |.|.-.+... + ....+ .+| ...+.++|+| ++.++++-
T Consensus 154 ~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 154 DAADPRLAQDLSSLAGKILRVDEEG-RPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp CTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEE
T ss_pred CCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEe
Confidence 32 4455555432 2 11122 244 2346899999 67766654
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.85 E-value=0.52 Score=40.11 Aligned_cols=145 Identities=10% Similarity=0.081 Sum_probs=72.2
Q ss_pred CCCEEEEEEC----C-----CeEEEEECCCcceeeeeeecC---ccEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCC
Q 019603 128 VNDSFMSGSL----D-----HSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYD 190 (338)
Q Consensus 128 ~~~~l~Sgs~----D-----~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~ 190 (338)
+++.++.||. + ..+.+||+.+++-...-.+.. ..... ..++.+++.|+.+ ..+..||..+..
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE-EETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE-EECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 5666777776 2 468889987764322111111 11121 2255666665432 356777765432
Q ss_pred CCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE
Q 019603 191 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg 265 (338)
....... ... ...-..+.+ +++.++.++.+ +.+.++|..+.+....-...........+.+ +++.++.|
T Consensus 149 W~~~~~~-p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 222 (308)
T 1zgk_A 149 WHLVAPM-LTR-RIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAG 222 (308)
T ss_dssp EEECCCC-SSC-CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred EeECCCC-Ccc-ccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEe
Confidence 1100000 000 111122222 56667777654 4688999887765432221111111122222 67777777
Q ss_pred cCC-----CcEEEEECCCC
Q 019603 266 SGD-----GTLHAWNINTR 279 (338)
Q Consensus 266 s~D-----g~i~vWd~~~~ 279 (338)
+.+ ..+.+||..+.
T Consensus 223 G~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 223 GYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CBCSSSBCCCEEEEETTTT
T ss_pred CCCCCCccceEEEEeCCCC
Confidence 765 46999998764
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.69 E-value=1.5 Score=41.66 Aligned_cols=225 Identities=9% Similarity=0.027 Sum_probs=127.2
Q ss_pred CCCcEEEEEcCCCeeEeEEee-cccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEE
Q 019603 47 DDDSVRLYDIVSAKLIKTTYH-KKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCM 125 (338)
Q Consensus 47 ~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~ 125 (338)
....|+.-++.+......+.. .......+.|......++.+. ...+.|+.+++........+..-.....++++
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD-----~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTD-----ISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEE-----CCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 457788888876543222111 122344566665555555432 23467777777654433333323345678899
Q ss_pred cCCCC-EEEEEECCCeEEEEECCCcceeeee--eecCccEEEEcC-CCCEEEEEEc-CCeEEEEeCCCCCCCCCeeEEec
Q 019603 126 SPVND-SFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTVAFDQ-QGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVG 200 (338)
Q Consensus 126 ~~~~~-~l~Sgs~D~~I~iWd~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~ 200 (338)
.+.++ ..++-...+.|.+.++........+ .+.....++++| .|.++.+-.. .+.|...++.... . ..+.
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~-~~l~- 162 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---R-TTLV- 162 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---C-EEEE-
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---e-EEEE-
Confidence 87655 4566667789999998644322122 122234578887 4555555422 4566666653211 1 1222
Q ss_pred CCCCceEEEEEcCCCCEEEEE-ecCCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 201 GDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 201 ~~~~~i~~v~~sp~~~~i~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
..-.....++++++++.+..+ ...+.|..++....... .+.. .......+++.. +..++|-...+.|...|..++
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE-Eeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 234557789999976666555 45678999998654432 2221 122345677654 455556666888999997766
Q ss_pred CeEeEe
Q 019603 280 NEVACW 285 (338)
Q Consensus 280 ~~~~~~ 285 (338)
+....+
T Consensus 239 ~~~~~l 244 (628)
T 4a0p_A 239 QNRTII 244 (628)
T ss_dssp CSCEEE
T ss_pred CceEEE
Confidence 544443
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.68 E-value=1.1 Score=40.11 Aligned_cols=114 Identities=15% Similarity=0.249 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEEccCCe------------eEEEeeeCC----CCCCCeeEEECCC---CCEEEEE
Q 019603 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE------------KRCGFSLEP----SPNTNTEATFTPD---GQYVVSG 265 (338)
Q Consensus 205 ~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~------------~~~~~~~~~----~~~~~~~~~fs~~---~~~l~sg 265 (338)
.+..+..+|+|.+++..+ +..|.|..+..+. ....|.... ....|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577789999999888875 5688888765221 111233321 2356889999996 4678899
Q ss_pred cCCCcEEEEECCCC--CeEeEee---------CCCCceEEEEEcCCCceEEee--cceEEEeeeCCCC
Q 019603 266 SGDGTLHAWNINTR--NEVACWN---------GNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSS 320 (338)
Q Consensus 266 s~Dg~i~vWd~~~~--~~~~~~~---------~h~~~v~~l~~~p~~~~l~s~--s~~~~iw~~~~~~ 320 (338)
-+|+.||+||+... ++. .++ .+...|.+++|.+++-.|... +....|+..-|-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~L 212 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFL 212 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCC
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCC
Confidence 99999999999852 222 343 223678899999987755553 3444444433333
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.54 E-value=1.1 Score=39.19 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCEEEEEE------------CCCeEEEEECCCcc-eeeeeeecC--------cc-EEEEc--CCCC--EEE
Q 019603 120 VISLCMSPVNDSFMSGS------------LDHSVRIWDLRVNA-CQGILRLRG--------RP-TVAFD--QQGL--VFA 173 (338)
Q Consensus 120 V~~l~~~~~~~~l~Sgs------------~D~~I~iWd~~~~~-~~~~~~~~~--------~~-~~~~~--~~~~--~~~ 173 (338)
...+.+.|+|..+++++ .+|.|.++|+++.. ....+...+ .+ -+.+. .++. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34556677765555542 78999999987431 111222221 11 12332 2453 344
Q ss_pred EEEc--CCeEEEEeCCCCCCCCCeeEEecCC-CCceEEEEEcCCCCEEEEEec-----------------CCcEEEEEcc
Q 019603 174 VAME--AGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTT-----------------NNNIYVLDAY 233 (338)
Q Consensus 174 ~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~v~~sp~~~~i~~~~~-----------------d~~i~i~~~~ 233 (338)
+... +..+.+|++..............+. -...+.+.+.|+|..+++... .+.++.++.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 4333 4677787765322110001112222 335788899999886665431 134454543
Q ss_pred CCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE-cCCCcEEEEECCC-CCe--EeEeeCCCCceEEEEEcC-CCceEEee
Q 019603 234 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINT-RNE--VACWNGNIGVVACLKWAP-RRAMFVAA 307 (338)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg-s~Dg~i~vWd~~~-~~~--~~~~~~h~~~v~~l~~~p-~~~~l~s~ 307 (338)
++....... -...+.++||||++.|+.+ +..+.|+.|++.. ++. .+.+ ...+..-.++..+ +|.+.+++
T Consensus 211 -~~~~~~~~~---l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 211 -NDVRVVAEG---FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp -TCCEEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred -CeEEEeecC---CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence 322211111 1235679999999877665 5678999999863 322 2234 2246677899999 58887765
No 318
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.31 E-value=1.2 Score=38.24 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=82.2
Q ss_pred cCCccceEEEEEcCCCCEEEEEECCCeEEEEEC--CCcceeeeeeecCccEEEEcCCCCEEEEEEcCCeEEEEe---CCC
Q 019603 114 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL--RVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD---SRS 188 (338)
Q Consensus 114 ~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d---~~~ 188 (338)
.++...+.++.+.+++.+++.+...+..+-+|- .+-+....-.......+.+.+++.+++ +..+|.++..+ .++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE
T ss_pred cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe
Confidence 456678899999998887776655454455553 111111110011123456678877654 45567776652 111
Q ss_pred CCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeee-CCCCCCCeeEEECCCCCEEEEEcC
Q 019603 189 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
........ + .....+..+.+.|++..+++ +.++.++ +....|+.-..... ...+..+..+.|.+++. ++.++.
T Consensus 238 W~~~~~~~--~-~~~~~~~~v~~~~~~~~~~~-g~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~ 311 (327)
T 2xbg_A 238 WGELLSPL--R-RNSVGFLDLAYRTPNEVWLA-GGAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ 311 (327)
T ss_dssp ECCCBCTT--S-SCCSCEEEEEESSSSCEEEE-ESTTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred eEeccCCc--c-cCCcceEEEEecCCCEEEEE-eCCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence 11100000 0 11234778889887765554 4566663 33344433222221 12234577888875554 566678
Q ss_pred CCcEEEEEC
Q 019603 268 DGTLHAWNI 276 (338)
Q Consensus 268 Dg~i~vWd~ 276 (338)
+|.|.-++-
T Consensus 312 ~G~i~~~~~ 320 (327)
T 2xbg_A 312 KGILLRYVT 320 (327)
T ss_dssp TTEEEEECC
T ss_pred CceEEEEcC
Confidence 898776653
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.28 E-value=0.78 Score=41.71 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRV 148 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~ 148 (338)
..-++++|.|+++++++--..+.|++++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 3457899999988777644434677666543
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.51 E-value=2 Score=36.58 Aligned_cols=229 Identities=8% Similarity=0.078 Sum_probs=100.9
Q ss_pred EEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCC------CceeEEEEccCCeEEEe--
Q 019603 41 LLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDST------GESLRYLSMYDNRILRY-- 112 (338)
Q Consensus 41 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~-- 112 (338)
+++-|+. .+..||..+.+..........+-...+.......+++......... ...+..+|..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444553 4889999988765421111011111111122333333322111110 12266777766654332
Q ss_pred ecCCccceEEEEEcCCCCEEEEEECC-------CeEEEEECCCcceeeeeeecCcc--EEEEcCCCCEEEEEEc------
Q 019603 113 FKGHKERVISLCMSPVNDSFMSGSLD-------HSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAME------ 177 (338)
Q Consensus 113 ~~~H~~~V~~l~~~~~~~~l~Sgs~D-------~~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------ 177 (338)
+..-...-..+.+ +++.++.||.+ ..+.+||+.+++=...-...... ..+...++.+++.|+.
T Consensus 96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCB
T ss_pred CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCc
Confidence 1111111111222 56677788765 35788898766422111111100 0111245566666643
Q ss_pred CCeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 178 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 178 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
-..+..||..+......... ... ...-..+.+ +++.++.++.+ +.+.+||..+++....-.........
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~-p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-- 247 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPM-KTP-RSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-- 247 (318)
T ss_dssp CCCEEEEETTTTEEEEECCC-SSC-CBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC--
T ss_pred cceEEEEcCCCCEEEECCCC-CCC-cccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce--
Confidence 23577888764321100000 000 011112222 56667777654 35778888777654322211111111
Q ss_pred EEECCCCCEEEEEcCCC--------------cEEEEECCCC
Q 019603 253 ATFTPDGQYVVSGSGDG--------------TLHAWNINTR 279 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg--------------~i~vWd~~~~ 279 (338)
.+...+++.++.|+.++ .+.+||..+.
T Consensus 248 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 248 SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 22223567777777543 4667777653
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.50 E-value=2.1 Score=44.46 Aligned_cols=234 Identities=10% Similarity=0.148 Sum_probs=122.2
Q ss_pred EeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccC-CeEEEe
Q 019603 34 DFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYD-NRILRY 112 (338)
Q Consensus 34 ~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 112 (338)
-.+|..+.++-=. ..++.|+|+++...+++.... ..|.+ |.+-....+.. .++..+..|++.+ ..+.+.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~Vvf--WkWis~~~l~l------VT~~aVyHW~~~~~s~P~k~ 141 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTF--WKWISLNTVAL------VTDNAVYHWSMEGESQPVKM 141 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceE--EEecCCCeeEE------EcCCeEEEeccCCCCccHHH
Confidence 3567666555543 689999999988777654332 23444 44433222211 2237899999964 345555
Q ss_pred ecCC----ccceEEEEEcCCCCEEEEEE-------CCCeEEEEECCCcceeeeeeecCccE--EEE---cCCCCEEEEEE
Q 019603 113 FKGH----KERVISLCMSPVNDSFMSGS-------LDHSVRIWDLRVNACQGILRLRGRPT--VAF---DQQGLVFAVAM 176 (338)
Q Consensus 113 ~~~H----~~~V~~l~~~~~~~~l~Sgs-------~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~ 176 (338)
|.-| ...|.+...+++.++++-.| -.|.+.+|.+..+... .+..|...- ..+ .+...++..+.
T Consensus 142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 5545 45677788888888865333 4588888887654321 111111000 000 01112222222
Q ss_pred c---CCeEEEEeCCCC--CCCCCeeE----Eec--CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC
Q 019603 177 E---AGAIKLFDSRSY--DKGPFDTF----LVG--GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 245 (338)
Q Consensus 177 ~---dg~i~i~d~~~~--~~~~~~~~----~~~--~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~ 245 (338)
. .++++|.++... ..+++... ... ....--..+..++.-..+...+..|.++++|+.++..+..-+..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris- 299 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS- 299 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc-
Confidence 2 267888876432 11122110 000 11222335677877778888999999999999998765433322
Q ss_pred CCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC
Q 019603 246 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 246 ~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~ 280 (338)
..++...+.+....-++.....|.|.--.+++..
T Consensus 300 -~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 300 -GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred -CCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 2223222223222333333455555544444433
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.33 E-value=2.8 Score=37.59 Aligned_cols=136 Identities=14% Similarity=0.264 Sum_probs=83.5
Q ss_pred CCeEEEEECCCcceeeeeeec------CccEEEEcCCCCEEEEEEcCCeEEEEeCCCCCC--------CCCe--eEEecC
Q 019603 138 DHSVRIWDLRVNACQGILRLR------GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK--------GPFD--TFLVGG 201 (338)
Q Consensus 138 D~~I~iWd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--------~~~~--~~~~~~ 201 (338)
++.||.-++..+..=+.+... ....+..+|+|.+++..+. ..|.+..+-.... .++. .+.++.
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 467777776533222233332 2344888999999887754 5788877652111 1111 222221
Q ss_pred ----CCCceEEEEEcCC---CCEEEEEecCCcEEEEEccCCeeEEE--------eeeCCCCCCCeeEEECCCCCEEEE--
Q 019603 202 ----DTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCG--------FSLEPSPNTNTEATFTPDGQYVVS-- 264 (338)
Q Consensus 202 ----~~~~i~~v~~sp~---~~~i~~~~~d~~i~i~~~~~~~~~~~--------~~~~~~~~~~~~~~fs~~~~~l~s-- 264 (338)
....|..+.|+|- +..+++-..|+.|++||+........ |........+.+++|++++-.|..
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 2456999999996 45788999999999999875321111 111122256778899998876666
Q ss_pred EcCCCcEEEE
Q 019603 265 GSGDGTLHAW 274 (338)
Q Consensus 265 gs~Dg~i~vW 274 (338)
..++|-|+-.
T Consensus 199 ~t~~GDIYAl 208 (452)
T 3pbp_A 199 TTEGGDIFAF 208 (452)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCCEEEE
Confidence 4588888754
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.27 E-value=1.8 Score=35.13 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=63.0
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeE-----EEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCC
Q 019603 205 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-----CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 279 (338)
Q Consensus 205 ~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~-----~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~ 279 (338)
.+..+.|+|+|.+.++ .++.++-.+..+.... ........-.....+.|.|+|.+.++ .||.|+-|+--+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 5668999999986666 6777776665331100 00011101112467899999998888 6699988875321
Q ss_pred Ce-------EeEeeCCCCceEEEEEcCCCceEEeecce
Q 019603 280 NE-------VACWNGNIGVVACLKWAPRRAMFVAASSV 310 (338)
Q Consensus 280 ~~-------~~~~~~h~~~v~~l~~~p~~~~l~s~s~~ 310 (338)
.. ...-..-=..+..|.|.|++.+.+..++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~dg~ 155 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQ 155 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEeCCc
Confidence 11 11111111467999999999999988655
No 324
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.01 E-value=2.7 Score=36.27 Aligned_cols=198 Identities=10% Similarity=0.072 Sum_probs=112.1
Q ss_pred eEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEe-ecC----Cc--cceEEEEE---cCCCCEEEEEE-------
Q 019603 74 CVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRY-FKG----HK--ERVISLCM---SPVNDSFMSGS------- 136 (338)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~----H~--~~V~~l~~---~~~~~~l~Sgs------- 136 (338)
+..|......++.++.+ .++|..|+..++..... +.+ .. ..+.+|.| .|+++.++...
T Consensus 17 ~~~wd~~~g~~~vs~l~-----~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLY-----KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CEEEETTTTEEEEEETT-----TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred CccCcCCCCEEEEEecc-----CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34444333444444322 26788888875543332 322 11 14578999 68877776533
Q ss_pred ------CCCeEEEEECC---Ccceeeeeeec---------------CccEEEEcCCCCEEEEEEcC-CeEEEEeCCCCCC
Q 019603 137 ------LDHSVRIWDLR---VNACQGILRLR---------------GRPTVAFDQQGLVFAVAMEA-GAIKLFDSRSYDK 191 (338)
Q Consensus 137 ------~D~~I~iWd~~---~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~ 191 (338)
.+..|..+|+. +++....+.+. ...-+..+++|...++++.. +.|..++....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-- 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-- 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC--
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC--
Confidence 27889999998 67655444321 12347889999999988877 77666653211
Q ss_pred CCCeeEEecC----CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeC--CC---CCCCeeE-EECCCCCE
Q 019603 192 GPFDTFLVGG----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE--PS---PNTNTEA-TFTPDGQY 261 (338)
Q Consensus 192 ~~~~~~~~~~----~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~--~~---~~~~~~~-~fs~~~~~ 261 (338)
....+.... .....+.+.++|++..+++....+.+..+|+...... ..... +. ......+ ..-.+|+.
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence 111111111 1223567899999998888877999999998743220 11111 11 1122232 33346666
Q ss_pred -EEEEcCCCcEEEEECCCCC
Q 019603 262 -VVSGSGDGTLHAWNINTRN 280 (338)
Q Consensus 262 -l~sgs~Dg~i~vWd~~~~~ 280 (338)
|++.+..+.+.+.+...++
T Consensus 248 llV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEEEETTEEEEEECSSTTS
T ss_pred EEEEcCCCCEEEEECCCCcc
Confidence 5555566666666655443
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.83 E-value=1.4 Score=39.95 Aligned_cols=105 Identities=15% Similarity=0.235 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCC------CCCCCeeEEECCC---CCEEE-EEcC------
Q 019603 204 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------SPNTNTEATFTPD---GQYVV-SGSG------ 267 (338)
Q Consensus 204 ~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~------~~~~~~~~~fs~~---~~~l~-sgs~------ 267 (338)
..-..|.|.|+|+.+++-...+.|++++..++.......+.. .......++|+|+ +.+|+ +-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 346689999999855544333478888765554332222211 1234568999995 44444 4332
Q ss_pred ------CCcEEEEECCCC--C---eEeE---ee-CCCCceEEEEEcCCCceEEeec
Q 019603 268 ------DGTLHAWNINTR--N---EVAC---WN-GNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 268 ------Dg~i~vWd~~~~--~---~~~~---~~-~h~~~v~~l~~~p~~~~l~s~s 308 (338)
...|.-+++... + .... +. ........|+|.||+.++++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665421 1 1111 22 1123468899999999877743
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.25 E-value=3.3 Score=34.78 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCCEEEEEECC-----CeEEEEECCCcceeeeeeecC---ccEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCCCCCC
Q 019603 128 VNDSFMSGSLD-----HSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPF 194 (338)
Q Consensus 128 ~~~~l~Sgs~D-----~~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~ 194 (338)
+++.++.||.+ ..+.+||+.+++-...-.+.. ....+ ..++.+++.|+.++ .+..||..+......
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 56677788765 358889987765322111111 11122 22566667666443 466777654321100
Q ss_pred eeEEecCCCCceEEEEEcCCCCEEEEEec-------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcC
Q 019603 195 DTFLVGGDTAEVCDIKFSNDGKSMLLTTT-------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 267 (338)
Q Consensus 195 ~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~ 267 (338)
... ... ...-..+.+ +++.++.++. .+.+.+||..+++....-...........+ ..+++.++.|+.
T Consensus 140 ~~~-p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~ 213 (302)
T 2xn4_A 140 APM-NTR-RSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGH 213 (302)
T ss_dssp CCC-SSC-CBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCB
T ss_pred CCC-CCc-ccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCC
Confidence 000 000 011112222 5666666654 245889998877655432221111111222 236777777776
Q ss_pred CC-----cEEEEECCCC
Q 019603 268 DG-----TLHAWNINTR 279 (338)
Q Consensus 268 Dg-----~i~vWd~~~~ 279 (338)
++ .+.+||..+.
T Consensus 214 ~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp SSSSBCCCEEEEETTTT
T ss_pred CCCcccceEEEEeCCCC
Confidence 53 6889998764
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.67 E-value=4.1 Score=34.44 Aligned_cols=203 Identities=11% Similarity=0.105 Sum_probs=93.7
Q ss_pred ceeEEEEccCCeEEE-eecCCccceEEEEEcCCCCEEEEEEC----C-------CeEEEEECCCcceeeeeeecCc---c
Q 019603 97 ESLRYLSMYDNRILR-YFKGHKERVISLCMSPVNDSFMSGSL----D-------HSVRIWDLRVNACQGILRLRGR---P 161 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~-~~~~H~~~V~~l~~~~~~~~l~Sgs~----D-------~~I~iWd~~~~~~~~~~~~~~~---~ 161 (338)
..+..+|..+++-.. .+.....+........+++.++.||. + ..+.+||+.+++-...-..... .
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 445666666554322 12211122222233456778888884 1 1277888877653211111111 1
Q ss_pred EEEEcCCCCEEEEEEcC--------CeEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec------CCcE
Q 019603 162 TVAFDQQGLVFAVAMEA--------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNI 227 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~------d~~i 227 (338)
..+ .-++.+++.|+.+ ..+..||..+......... ... ...-..+. -+++.++.++. .+.+
T Consensus 93 ~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 167 (315)
T 4asc_A 93 GLG-EALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL-PYV-VYGHTVLS--HMDLVYVIGGKGSDRKCLNKM 167 (315)
T ss_dssp EEE-EETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC-SSC-CBSCEEEE--ETTEEEEECCBCTTSCBCCCE
T ss_pred eEE-EECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC-CCc-ccceeEEE--ECCEEEEEeCCCCCCcccceE
Confidence 111 1245566665532 4577777654321100000 000 01111122 25666777776 2468
Q ss_pred EEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC-----cEEEEECCCCC--eEeEeeCCCCceEEEEEcCC
Q 019603 228 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-----TLHAWNINTRN--EVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg-----~i~vWd~~~~~--~~~~~~~h~~~v~~l~~~p~ 300 (338)
.++|..+.+....-.......... +..-+++.++.|+.++ .+.++|..+.+ .+..+........++.+ +
T Consensus 168 ~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 243 (315)
T 4asc_A 168 CVYDPKKFEWKELAPMQTARSLFG--ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--V 243 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCE--EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred EEEeCCCCeEEECCCCCCchhceE--EEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--C
Confidence 999988776543222211111112 2223677777787655 58889987642 23222211122222322 5
Q ss_pred CceEEeec
Q 019603 301 RAMFVAAS 308 (338)
Q Consensus 301 ~~~l~s~s 308 (338)
+.+++.|+
T Consensus 244 ~~l~v~GG 251 (315)
T 4asc_A 244 GTLYAIGG 251 (315)
T ss_dssp TEEEEEEE
T ss_pred CEEEEECC
Confidence 56666665
No 328
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.54 E-value=4.8 Score=34.82 Aligned_cols=235 Identities=11% Similarity=0.146 Sum_probs=129.2
Q ss_pred CCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEc
Q 019603 47 DDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMS 126 (338)
Q Consensus 47 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~ 126 (338)
++.++.|-|+..+.....-. -......++ |...+.+-. .+.+++++++++.+.++.+.- ...|.--.|-
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrp---i~AdsAIMn--P~~~ViALr-----ag~~LQiFnletK~klks~~~-~e~VvfWkWi 115 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRP---ISADSAIMN--PASKVIALK-----AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWI 115 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEE---CCCSEEEEC--SSSSEEEEE-----ETTEEEEEETTTTEEEEEEEC-SSCEEEEEEC
T ss_pred CCCEEEEEECCCCCCccccc---cccceeeeC--CCccEEEEe-----cCCeEEEechHHhhhhcceec-CCccEEEEec
Confidence 44578899998755332111 112222333 333222211 258899999999887776653 4577777776
Q ss_pred CCCCE-EEEEECCCeEEEEECCCc-ceeeeeeecC----ccE--EEEcCCCCEEE-EEE------cCCeEEEEeCCCCCC
Q 019603 127 PVNDS-FMSGSLDHSVRIWDLRVN-ACQGILRLRG----RPT--VAFDQQGLVFA-VAM------EAGAIKLFDSRSYDK 191 (338)
Q Consensus 127 ~~~~~-l~Sgs~D~~I~iWd~~~~-~~~~~~~~~~----~~~--~~~~~~~~~~~-~~~------~dg~i~i~d~~~~~~ 191 (338)
..... |+| +..|.-|++... ...+.+..+. ..+ ...+++...++ +|. -.|.+++|..+..
T Consensus 116 s~~~L~lVT---~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-- 190 (365)
T 2xzh_A 116 SLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-- 190 (365)
T ss_dssp SSSEEEEEE---SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--
T ss_pred CCCeEEEEc---CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--
Confidence 44332 444 468999998643 3455665443 233 34566666443 332 2377888876532
Q ss_pred CCCeeEEecCCCCceEEEEEcCC---CCEEEEEec---CCcEEEEEccCC---ee-----EEE--eeeCCCCCCCeeEEE
Q 019603 192 GPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTT---NNNIYVLDAYGG---EK-----RCG--FSLEPSPNTNTEATF 255 (338)
Q Consensus 192 ~~~~~~~~~~~~~~i~~v~~sp~---~~~i~~~~~---d~~i~i~~~~~~---~~-----~~~--~~~~~~~~~~~~~~f 255 (338)
....++||...-..+.+..+ ...+..+.. .++++|.++... .. ... |.-.........+-.
T Consensus 191 ---~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv 267 (365)
T 2xzh_A 191 ---VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 267 (365)
T ss_dssp ---EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE
T ss_pred ---ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe
Confidence 12334555433322222111 112333332 247888876322 11 001 111111223345666
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCC
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 300 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~ 300 (338)
|+.-..++.-..-|.|+++|+.++.++..-.-....|..-+-++.
T Consensus 268 s~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~ 312 (365)
T 2xzh_A 268 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA 312 (365)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGG
T ss_pred cccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCC
Confidence 777777888888999999999999998876656666665554444
No 329
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.51 E-value=11 Score=38.73 Aligned_cols=90 Identities=10% Similarity=0.122 Sum_probs=54.4
Q ss_pred EEEEEccCCeeEEEeeeCCCCCCCeeE---EECCC-CCEEEEEc----------CCCcEEEEECCCCCeEeEe-eCCCCc
Q 019603 227 IYVLDAYGGEKRCGFSLEPSPNTNTEA---TFTPD-GQYVVSGS----------GDGTLHAWNINTRNEVACW-NGNIGV 291 (338)
Q Consensus 227 i~i~~~~~~~~~~~~~~~~~~~~~~~~---~fs~~-~~~l~sgs----------~Dg~i~vWd~~~~~~~~~~-~~h~~~ 291 (338)
++++|..+.+....+++.... .+.++ .|..+ ..+|+.|. ..|.|+++++..++..... +...+.
T Consensus 809 i~lidp~t~~~i~~~~l~~nE-~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNE-YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTE-EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEeCCCCeEEEEEeCCCCc-ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 556666666665555555432 23333 24332 46888775 3578999999754332222 123588
Q ss_pred eEEEEEcCCCceEEeecceEEEeeeCC
Q 019603 292 VACLKWAPRRAMFVAASSVLSFWIPNP 318 (338)
Q Consensus 292 v~~l~~~p~~~~l~s~s~~~~iw~~~~ 318 (338)
|++|.-- +|+++|+.+..+++|.+..
T Consensus 888 v~al~~~-~g~Lla~ig~~l~vy~l~~ 913 (1158)
T 3ei3_A 888 VYSMVEF-NGKLLASINSTVRLYEWTT 913 (1158)
T ss_dssp EEEEEEE-TTEEEEEETTEEEEEEECT
T ss_pred CEEEeee-CCEEEEEcCCEEEEEECCC
Confidence 8887633 4577777788899997653
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.03 E-value=5.5 Score=34.33 Aligned_cols=57 Identities=5% Similarity=-0.045 Sum_probs=29.1
Q ss_pred cEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC------cEEEEECCCCCeEeE
Q 019603 226 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG------TLHAWNINTRNEVAC 284 (338)
Q Consensus 226 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg------~i~vWd~~~~~~~~~ 284 (338)
.+.+||..+.+....-.+...... ..+...+++.++.||.++ .|.+.++++.+.+..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 477888876655443222221111 223345778888888653 355568877665443
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.26 E-value=6.9 Score=34.01 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCEEEEEec-------------CCcEEEEEccCCe-------eEEEeeeCCCCCCCeeEEECCCCCEEEEE
Q 019603 206 VCDIKFSNDGKSMLLTTT-------------NNNIYVLDAYGGE-------KRCGFSLEPSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 206 i~~v~~sp~~~~i~~~~~-------------d~~i~i~~~~~~~-------~~~~~~~~~~~~~~~~~~fs~~~~~l~sg 265 (338)
...+.|.|||.++++.+. .+.|.-++....- ....+. .++. ....++|+|+|.+.++-
T Consensus 142 g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 142 GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEE
T ss_pred CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEe
Confidence 445889999987766542 3456666543210 001111 1222 24578999998877663
Q ss_pred -cCCC
Q 019603 266 -SGDG 269 (338)
Q Consensus 266 -s~Dg 269 (338)
+.|+
T Consensus 220 ~g~~~ 224 (347)
T 3das_A 220 FGQDT 224 (347)
T ss_dssp CCSSS
T ss_pred cCCCC
Confidence 3444
No 332
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.17 E-value=7 Score=33.92 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=37.9
Q ss_pred ceEEEEEcC-------CCCEEEEEecCCcEEEEEccCCeeEEEeeeC-CCCCCCeeEEECCCCCEEEEE
Q 019603 205 EVCDIKFSN-------DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 205 ~i~~v~~sp-------~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~fs~~~~~l~sg 265 (338)
..+.+.|-+ ++.++++.-..+.|..+++..++......+. .....+..+++.|||.++++.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 456677753 4666666666778888887665433322222 112467889999999876653
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.10 E-value=5.3 Score=32.38 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=80.8
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEeCCCCCCCC---CeeEEec-CCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCe
Q 019603 161 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP---FDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 236 (338)
Q Consensus 161 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---~~~~~~~-~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~ 236 (338)
..++|+|+|.+.++ .+|.+.-.+..+..... ....+-. +-+. -.++-|.|+|.+.++ .|+.|+-++.-+..
T Consensus 44 ~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 44 KFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred eeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 46899999998887 67776555543211100 0111100 1111 356789999987777 66888877642211
Q ss_pred eE-----EEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEECCCCC------eEeEee-CCCCceEEEEEcCCCceE
Q 019603 237 KR-----CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN------EVACWN-GNIGVVACLKWAPRRAMF 304 (338)
Q Consensus 237 ~~-----~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~------~~~~~~-~h~~~v~~l~~~p~~~~l 304 (338)
.. ........=..+..+.|.|+|.+.+.. |+.++-+-.-+.. ....+. ..-..-.-+.|.|++.++
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~ 196 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLF 196 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEE
Confidence 00 001111111346788999999887776 7775433222111 111121 222233447799999988
Q ss_pred EeecceEEEeeeCCC
Q 019603 305 VAASSVLSFWIPNPS 319 (338)
Q Consensus 305 ~s~s~~~~iw~~~~~ 319 (338)
++. .-+++...+.
T Consensus 197 ~v~--~g~~Y~~~~p 209 (236)
T 1tl2_A 197 GVQ--GGKFYEDYPP 209 (236)
T ss_dssp EEE--TTEEEEESCC
T ss_pred EEe--CCeEEecCCc
Confidence 877 4455544433
No 334
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=90.08 E-value=18 Score=36.96 Aligned_cols=246 Identities=17% Similarity=0.180 Sum_probs=127.5
Q ss_pred cEEEEEcCCCeeEeEEeecc-cCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEee-cCCccceEEEEEcC
Q 019603 50 SVRLYDIVSAKLIKTTYHKK-HGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYF-KGHKERVISLCMSP 127 (338)
Q Consensus 50 ~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~H~~~V~~l~~~~ 127 (338)
.|++.+...+..+..+.... ..+...+. ++..++.++ ++.+.++.+.+++..... ..-.+.|.|+++.|
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~--n~~~vvva~-------g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~ 563 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASC--NSSQVVVAV-------GRALYYLQIHPQELRQISHTEMEHEVACLDITP 563 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEE--CSSEEEEEE-------TTEEEEEEEETTEEEEEEEEECSSCEEEEECCC
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEe--CCCEEEEEE-------CCEEEEEEeeCCceeeecccCCCCceEEEEeec
Confidence 46666655444444443322 22333332 333444332 256667776655432211 12346899999986
Q ss_pred C------CCEEEEEEC-CCeEEEEECCCcceeeeeeecC--cc-EEEEc--CCCCEEEEEEcCCeEEEEeCCCCCCCCC-
Q 019603 128 V------NDSFMSGSL-DHSVRIWDLRVNACQGILRLRG--RP-TVAFD--QQGLVFAVAMEAGAIKLFDSRSYDKGPF- 194 (338)
Q Consensus 128 ~------~~~l~Sgs~-D~~I~iWd~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~- 194 (338)
. +++++.|.+ |++|+|+.+..-+......+.. .+ .+.+. ....++.+|..||.+.-+.+... .+.+
T Consensus 564 ~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~-tg~l~ 642 (1158)
T 3ei3_A 564 LGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE-TGLLS 642 (1158)
T ss_dssp CSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTT-TCCEE
T ss_pred CCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCC-CCccc
Confidence 4 368899997 9999999998655444333322 11 22221 23357788999998876654321 1111
Q ss_pred ee--EEecCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCC-eeEEECCCC--CEEEEEcCCC
Q 019603 195 DT--FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN-TEATFTPDG--QYVVSGSGDG 269 (338)
Q Consensus 195 ~~--~~~~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~fs~~~--~~l~sgs~Dg 269 (338)
+. ..+ | ..++.-..+...+..-+.+..++...++... +... +....- ..+ ....|+... .-++..+ ++
T Consensus 643 d~r~~~L-G-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~--~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~ 715 (1158)
T 3ei3_A 643 DRKKVTL-G-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV--FSNVNL-KEVNYMCPLNSDGYPDSLALAN-NS 715 (1158)
T ss_dssp EEEEEEC-C-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE--EEEBSS-SCCCEEEEECCSSSTTEEEEEC-SS
T ss_pred cceeEEc-C-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE--EeccCh-HHhceEeccCcccCCCcEEEEc-CC
Confidence 11 122 2 2344433444445544555556665555433 2211 221111 122 234565432 3344333 45
Q ss_pred cEEEEECCCCC--eEeEeeCCCCceEEEEEcCCCceEEeecceEEE
Q 019603 270 TLHAWNINTRN--EVACWNGNIGVVACLKWAPRRAMFVAASSVLSF 313 (338)
Q Consensus 270 ~i~vWd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~i 313 (338)
.++|..+.+-. .++.+.- ...+..++++|..+.++.+...-..
T Consensus 716 ~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~ 760 (1158)
T 3ei3_A 716 TLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEV 760 (1158)
T ss_dssp CEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred ceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccc
Confidence 69999886432 2333332 3688999999998877776543333
No 335
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.78 E-value=15 Score=35.45 Aligned_cols=185 Identities=11% Similarity=0.052 Sum_probs=96.7
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeeecCccEEEE-cCCCCEEEEEEcCCeEEEEeCCCCCCCCCee
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF-DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 196 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 196 (338)
..|.++....++ .|..|+.+ -+..||.++++...........+..+ ..+| .+-+++.+ -+..+|..... +..
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~-Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g-~lWigt~~-Gl~~~~~~~~~---~~~ 135 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDN-GILVYNYRADRYEQPETDFPTDVRTMALQGD-TLWLGALN-GLYTYQLQSRK---LTS 135 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETT-EEEEEETTTTEECCCSCCCCSCEEEEEEETT-EEEEEETT-EEEEEETTTCC---EEE
T ss_pred ceEEEEEEcCCC-cEEEEeCC-CeEEEeCCCCEEECcccCCCceEEEEEecCC-cEEEEcCC-cceeEeCCCCe---EEE
Confidence 456776666554 56666655 47899987664322100001111111 2344 45555655 56677754321 211
Q ss_pred EEe---cCCCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCC----CCCCeeEEECCCCCEEEEEcCCC
Q 019603 197 FLV---GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS----PNTNTEATFTPDGQYVVSGSGDG 269 (338)
Q Consensus 197 ~~~---~~~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~----~~~~~~~~fs~~~~~l~sgs~Dg 269 (338)
+.. .-....|.++...+++...+ ++. +.+..++..++.... +..... ...+.++...+++..|..|.. +
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred eccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 100 01124577777777777544 443 567788876654322 221111 123566777776664444443 4
Q ss_pred cEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeecceEEE
Q 019603 270 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSF 313 (338)
Q Consensus 270 ~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~~~~i 313 (338)
-+..+|..+++......-....|.+|.-.+++.+.+....-+.+
T Consensus 212 Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~ 255 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDNGLYV 255 (758)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETTEEEE
T ss_pred CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCCceeE
Confidence 58888987654322111123468888888888877665433333
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=89.72 E-value=4.8 Score=34.70 Aligned_cols=93 Identities=6% Similarity=0.037 Sum_probs=43.8
Q ss_pred CCCEEEEEec------CCcEEEEEc--cCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC-----------------
Q 019603 214 DGKSMLLTTT------NNNIYVLDA--YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----------------- 268 (338)
Q Consensus 214 ~~~~i~~~~~------d~~i~i~~~--~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D----------------- 268 (338)
+++.+++++. .+.+..++. .+.+....-............+...+++.++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 5566666653 345777775 444433221111111111122333467777777632
Q ss_pred -----CcEEEEECCCC--CeEeEeeCCCCceEEEEEcCCCceEEeec
Q 019603 269 -----GTLHAWNINTR--NEVACWNGNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 269 -----g~i~vWd~~~~--~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 308 (338)
..+.+||..+. ..+..+......-.++ ..++++++.|+
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG 324 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGG 324 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEE
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEee
Confidence 25788998753 4444443322222233 24667777775
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=89.23 E-value=12 Score=33.70 Aligned_cols=242 Identities=11% Similarity=0.117 Sum_probs=133.0
Q ss_pred eCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEE
Q 019603 46 SDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCM 125 (338)
Q Consensus 46 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~ 125 (338)
+.+.++.|-|+..+.....- .-......+++...-+..- .+.+++++++++...++.+.- ...|.--.|
T Consensus 45 ~~~~~vvIiDl~~~~~~~rr---pi~AdsAIMnP~~~iiALr-------ag~~lQiFnle~K~klks~~~-~e~VvfWkW 113 (494)
T 1bpo_A 45 GEQAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALK-------AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKW 113 (494)
T ss_dssp TTCCEEEEEETTSTTSCEEE---ECCCSEEEECSSSSCEEEE-------ETTEEEEEETTTTEEEEEEEC-SSCCCEEEE
T ss_pred CCCCeEEEEECCCCCcceec---ccccceeeeCCCCcEEEEe-------cCCeEEEEchHHhhhhcceec-CCCceEEEe
Confidence 34457899999875533211 1112223333333222221 258999999999887776553 345666677
Q ss_pred cCCCCEEEEEECCCeEEEEECCCc-ceeeeeeecC----ccE--EEEcCCCCEEE-EEE------cCCeEEEEeCCCCCC
Q 019603 126 SPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRLRG----RPT--VAFDQQGLVFA-VAM------EAGAIKLFDSRSYDK 191 (338)
Q Consensus 126 ~~~~~~l~Sgs~D~~I~iWd~~~~-~~~~~~~~~~----~~~--~~~~~~~~~~~-~~~------~dg~i~i~d~~~~~~ 191 (338)
-... .|+-. .+..|.-|++... ...+.+..+. ..+ ...+++...++ +|. -.|.+++|..+...
T Consensus 114 is~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~- 190 (494)
T 1bpo_A 114 ISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV- 190 (494)
T ss_dssp EETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-
T ss_pred cCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-
Confidence 5433 33322 2568999998643 3455665443 233 34567776544 332 23788888765422
Q ss_pred CCCeeEEecCCCCceEEEEEcCCC---CEEEEEec---CCcEEEEEccCC---e-----eEEE--eeeCCCCCCCeeEEE
Q 019603 192 GPFDTFLVGGDTAEVCDIKFSNDG---KSMLLTTT---NNNIYVLDAYGG---E-----KRCG--FSLEPSPNTNTEATF 255 (338)
Q Consensus 192 ~~~~~~~~~~~~~~i~~v~~sp~~---~~i~~~~~---d~~i~i~~~~~~---~-----~~~~--~~~~~~~~~~~~~~f 255 (338)
...++||...-..+.+..+. ..+..+.. .++++|.++... . +... |.-.........+-.
T Consensus 191 ----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 191 ----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp ----EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred ----cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 23345554333333332111 12333333 267888886432 1 1000 111111223345667
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEE
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 305 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 305 (338)
|+.-..++.-..-|.|+++|+.++.++..-.-....|..-+-++...-++
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~ 316 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEE
Confidence 77778888888999999999999999887665666666655554433333
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.75 E-value=17 Score=34.80 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=89.9
Q ss_pred ceeEEEEccCCeEEEee--------cCCccceEEEEEcCCCCEEEEEECCC------eEEEEECCCcceeeeeee---cC
Q 019603 97 ESLRYLSMYDNRILRYF--------KGHKERVISLCMSPVNDSFMSGSLDH------SVRIWDLRVNACQGILRL---RG 159 (338)
Q Consensus 97 ~~i~~~~~~~~~~~~~~--------~~H~~~V~~l~~~~~~~~l~Sgs~D~------~I~iWd~~~~~~~~~~~~---~~ 159 (338)
..+.++|..+++....- ..-...-..+.+..+++.++.||.++ .+.+||+.+++=...-.. ..
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 45777887766533221 11111122223322677778887553 578889877542211111 11
Q ss_pred ccEEEEcCCCCEEEEEEcCC--eEEEEeCCCCCCCCCeeE-EecCCCCceEEEEEcCC-CCEEEEEecC-------CcEE
Q 019603 160 RPTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDTF-LVGGDTAEVCDIKFSND-GKSMLLTTTN-------NNIY 228 (338)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~v~~sp~-~~~i~~~~~d-------~~i~ 228 (338)
....+.-.++.+++.|+.++ .+.+||..+......... ........-..+.+..+ ++.++.|+.+ +.+.
T Consensus 492 ~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~ 571 (695)
T 2zwa_A 492 RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI 571 (695)
T ss_dssp SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEE
T ss_pred cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEE
Confidence 11233324777888776544 678888765321110000 00000111122445544 6667777652 4588
Q ss_pred EEEccCCe------eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCC--------CcEEEEECCCC
Q 019603 229 VLDAYGGE------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD--------GTLHAWNINTR 279 (338)
Q Consensus 229 i~~~~~~~------~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~D--------g~i~vWd~~~~ 279 (338)
+||..+.. .............-..++...+++.++.||.+ ..|.++|..+.
T Consensus 572 ~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 572 IFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred EEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 99988776 22221211111111123333337777777743 45999999865
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=88.61 E-value=10 Score=31.99 Aligned_cols=172 Identities=13% Similarity=0.154 Sum_probs=81.3
Q ss_pred eeEEEEccCCeEEE-eecCCccceEEEEEcCCCCEEEEEEC----CC-------eEEEEECCCcceeeeeeecC---ccE
Q 019603 98 SLRYLSMYDNRILR-YFKGHKERVISLCMSPVNDSFMSGSL----DH-------SVRIWDLRVNACQGILRLRG---RPT 162 (338)
Q Consensus 98 ~i~~~~~~~~~~~~-~~~~H~~~V~~l~~~~~~~~l~Sgs~----D~-------~I~iWd~~~~~~~~~~~~~~---~~~ 162 (338)
.+..+|..+++... .+.....+-.......+++.++.||. ++ .+.+||+.+++-...-.... ...
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 46677776655433 11111112222233456777888873 12 27778887664322111111 111
Q ss_pred EEEcCCCCEEEEEEcC-------CeEEEEeCCCCCCCCCeeEEecCCCC---ceEEEEEcCCCCEEEEEec------CCc
Q 019603 163 VAFDQQGLVFAVAMEA-------GAIKLFDSRSYDKGPFDTFLVGGDTA---EVCDIKFSNDGKSMLLTTT------NNN 226 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~---~i~~v~~sp~~~~i~~~~~------d~~ 226 (338)
.+ ..++.+++.|+.+ ..+..||..+.... .. ..... .-..+. .+++.++.++. .+.
T Consensus 105 ~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~----~~-~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 105 LG-EVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS----EV-KNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp EE-EETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE----EE-CCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCC
T ss_pred eE-EECCEEEEEcCccCCCCcccceEEEEeCCCCCEe----EC-CCCCCcccccEEEE--ECCEEEEEcCCCCCCCccce
Confidence 22 2255666666643 24667776543211 00 00000 011111 35666677764 246
Q ss_pred EEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCC-----cEEEEECCCC
Q 019603 227 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-----TLHAWNINTR 279 (338)
Q Consensus 227 i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg-----~i~vWd~~~~ 279 (338)
+.++|..+++....-......... .++. -+++.++.|+.++ .+.+||..+.
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEEcCCCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 899998887655432221111111 2222 3567777776543 4778898764
No 340
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.32 E-value=6.8 Score=35.60 Aligned_cols=103 Identities=12% Similarity=0.179 Sum_probs=57.8
Q ss_pred eEEEEEcCCCC-EEEEEecCCcEEEEEccCCe---eEEEee--eC-C----CCCCCeeEEECCC----CCEEEEEcC--C
Q 019603 206 VCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGE---KRCGFS--LE-P----SPNTNTEATFTPD----GQYVVSGSG--D 268 (338)
Q Consensus 206 i~~v~~sp~~~-~i~~~~~d~~i~i~~~~~~~---~~~~~~--~~-~----~~~~~~~~~fs~~----~~~l~sgs~--D 268 (338)
-..|.|.|++. .++++...+.|++++..... ...... .. + .......++|+|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 56788999986 57777888999999643221 111111 00 0 1234577999996 444444332 1
Q ss_pred ----------CcEEEEECCCC----------CeEeEee--CCCCceEEEEEcCCCceEEeec
Q 019603 269 ----------GTLHAWNINTR----------NEVACWN--GNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 269 ----------g~i~vWd~~~~----------~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s 308 (338)
..|.-|.+... +.+..+. .....-..|+|.||+.+.++.+
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 13444666421 1222222 1122457899999999777754
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.68 E-value=34 Score=35.88 Aligned_cols=233 Identities=12% Similarity=0.154 Sum_probs=116.3
Q ss_pred CCCcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCceeEEEEccCCeEEEeecCCccceEEEEEc
Q 019603 47 DDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMS 126 (338)
Q Consensus 47 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~H~~~V~~l~~~ 126 (338)
...+|.|-|+..+..+.. ..-......+ +|...+.+-. .|.+++++++.+...++.+.- +..|.--.|-
T Consensus 46 ~~~~vvIidl~~~~~~~r---rpi~AdsAIM--nP~~~iiALr-----ag~~lQiFnl~~k~klks~~~-~e~VvfWkWi 114 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIR---RPISADSAIM--NPASKVIALK-----AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWI 114 (1630)
T ss_pred CCceEEEEECCCCCCccc---ccccchhhcc--CCCcceEEEe-----cCCeEEEeehHHhhhhccccc-CCCceEEEec
Confidence 445788889887553311 0011112223 3333232211 258999999987765554432 3467667775
Q ss_pred CCCCE-EEEEECCCeEEEEECCCc-ceeeeeeec----CccE--EEEcCCCCEEE-EEE------cCCeEEEEeCCCCCC
Q 019603 127 PVNDS-FMSGSLDHSVRIWDLRVN-ACQGILRLR----GRPT--VAFDQQGLVFA-VAM------EAGAIKLFDSRSYDK 191 (338)
Q Consensus 127 ~~~~~-l~Sgs~D~~I~iWd~~~~-~~~~~~~~~----~~~~--~~~~~~~~~~~-~~~------~dg~i~i~d~~~~~~ 191 (338)
..... |+| +..|.-|++... ...+.+..+ +..+ ...+++...++ +|. -.|.+++|.......
T Consensus 115 s~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s 191 (1630)
T 1xi4_A 115 SLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS 191 (1630)
T ss_pred CCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc
Confidence 44332 444 467999999642 333444433 2233 33456666443 332 347888887654221
Q ss_pred CCCeeEEecCCCCceEEEEEc--CC-CCEEEEEec---CCcEEEEEccCC-eeEEEeeeC---------CCCCCCeeEEE
Q 019603 192 GPFDTFLVGGDTAEVCDIKFS--ND-GKSMLLTTT---NNNIYVLDAYGG-EKRCGFSLE---------PSPNTNTEATF 255 (338)
Q Consensus 192 ~~~~~~~~~~~~~~i~~v~~s--p~-~~~i~~~~~---d~~i~i~~~~~~-~~~~~~~~~---------~~~~~~~~~~f 255 (338)
- .+.||......+... +. ...+..+.. .++++|.++... .-...|+.. ........+..
T Consensus 192 Q-----~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v 266 (1630)
T 1xi4_A 192 Q-----PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (1630)
T ss_pred h-----hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence 1 122332221111111 11 111222211 257888876332 001111111 01122334556
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEeEeeCCCCceEEEEEc
Q 019603 256 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 298 (338)
Q Consensus 256 s~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~v~~l~~~ 298 (338)
|+.-..+..-..-|.|+++|+.++.++..-.-...+|...+-+
T Consensus 267 s~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (1630)
T ss_pred ccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence 6666777777889999999999998766544344444444433
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.46 E-value=14 Score=31.27 Aligned_cols=173 Identities=9% Similarity=0.035 Sum_probs=92.0
Q ss_pred EEcCCCCEEEEEECC--------------CeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEE--cCCeEEEEeCC
Q 019603 124 CMSPVNDSFMSGSLD--------------HSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM--EAGAIKLFDSR 187 (338)
Q Consensus 124 ~~~~~~~~l~Sgs~D--------------~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~d~~ 187 (338)
-+++++++|+-+... ..|+..++...+... + .......+++++..+.-.. .++.-.|+-+.
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l--~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~ 135 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-L--DPDPCIYASLIGNYIYYLHYDTQTATSLYRIR 135 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-E--ECSCEEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-e--ecCCccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence 346778877655442 456666765544221 1 1222345677777776654 34445555433
Q ss_pred CCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec-CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEEc
Q 019603 188 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 266 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs 266 (338)
.... .. ..+.. +. + ..++|+++.|...+. ...|+..++.++.....+. + .. ...++|++++|+=..
T Consensus 136 ~dGs-~~-~~lt~-~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~---~~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 136 IDGE-EK-KKIKN-HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--C---NC-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp TTSC-CC-EEEES-SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--S---CE-EEEEEEETTEEEEEE
T ss_pred CCCC-Ce-EEEeC-CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--C---Cc-cceeeecCCEEEEEE
Confidence 2111 11 22222 21 1 346788998887776 5678888887766543322 1 11 234669999887654
Q ss_pred CC--CcEEEEECCCCCeEeEeeCCCCceEEEEEcCCCceEEeec--ceEEEeeeC
Q 019603 267 GD--GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 317 (338)
Q Consensus 267 ~D--g~i~vWd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~~~~iw~~~ 317 (338)
.+ ..|..=++.... ...|.. ..+ ..|+|++..|.-++ ..-.|+.++
T Consensus 203 ~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~ 252 (302)
T 3s25_A 203 VNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVK 252 (302)
T ss_dssp GGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEE
Confidence 33 356666665443 334432 233 33778887776542 223455443
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.07 E-value=25 Score=33.71 Aligned_cols=200 Identities=10% Similarity=0.050 Sum_probs=97.5
Q ss_pred cCCCEEEEeeCC----CcEEEEEcCCCeeEeEE-e-----ecccCeeeEEEeec-CCeeEEecCccCCC-CCceeEEEEc
Q 019603 37 RKDDLLVTASDD----DSVRLYDIVSAKLIKTT-Y-----HKKHGADCVCFTHH-PSSVICSTKYNLDS-TGESLRYLSM 104 (338)
Q Consensus 37 ~~~~~l~s~s~D----~~i~iWd~~~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~i~~~~~ 104 (338)
.++.+++.||.+ ..+.+||..+++..... . ....-....+.... +..+++..+..... .-..+.++|.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777778754 46888999887654332 1 01101111122221 33444333221111 1245788888
Q ss_pred cCCeEEEe--ecCCccceEEEEEcCCCCEEEEEECCC--eEEEEECCCcceeeeee-------ecCccEEEEcCC-CCEE
Q 019603 105 YDNRILRY--FKGHKERVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILR-------LRGRPTVAFDQQ-GLVF 172 (338)
Q Consensus 105 ~~~~~~~~--~~~H~~~V~~l~~~~~~~~l~Sgs~D~--~I~iWd~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~ 172 (338)
.+.+.... +..-...- ++..-.+++.++.||.++ .+.+||+.++.=...-. ..+...+.++.+ +.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 77554332 11111111 122223778888888765 68999987764221111 011122444554 6677
Q ss_pred EEEEc--C-----CeEEEEeCCCCCC-CCC-eeEEecC--C-CCceEEEEEcCCCCEEEEEec--------CCcEEEEEc
Q 019603 173 AVAME--A-----GAIKLFDSRSYDK-GPF-DTFLVGG--D-TAEVCDIKFSNDGKSMLLTTT--------NNNIYVLDA 232 (338)
Q Consensus 173 ~~~~~--d-----g~i~i~d~~~~~~-~~~-~~~~~~~--~-~~~i~~v~~sp~~~~i~~~~~--------d~~i~i~~~ 232 (338)
+.|+. + +.+..||..+... ... ...+... . ...-..+ ...+++.++.|+. .+.+.+||.
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 77654 2 4577888765431 000 0111110 0 0111222 2223667777774 346899998
Q ss_pred cCCeeE
Q 019603 233 YGGEKR 238 (338)
Q Consensus 233 ~~~~~~ 238 (338)
.+++..
T Consensus 634 ~t~~W~ 639 (695)
T 2zwa_A 634 LSETLT 639 (695)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 877654
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.06 E-value=11 Score=35.02 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=47.4
Q ss_pred EEEEcCCCCEEEEEec-CCcEEEEEccCC------ee-----EEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEEEE
Q 019603 208 DIKFSNDGKSMLLTTT-NNNIYVLDAYGG------EK-----RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 275 (338)
Q Consensus 208 ~v~~sp~~~~i~~~~~-d~~i~i~~~~~~------~~-----~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~vWd 275 (338)
.+.++|||+++++++. +.++.+++...- +. ...-+.+. -......+|.++|.-..|---|..|--||
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEe
Confidence 4789999999988876 678999987521 10 00001111 12356789999995555566899999999
Q ss_pred CCC
Q 019603 276 INT 278 (338)
Q Consensus 276 ~~~ 278 (338)
+..
T Consensus 406 i~~ 408 (638)
T 3sbq_A 406 MEE 408 (638)
T ss_dssp HHH
T ss_pred ccH
Confidence 975
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=80.77 E-value=17 Score=31.44 Aligned_cols=113 Identities=11% Similarity=0.162 Sum_probs=64.8
Q ss_pred CEEEEEECCCeEEEEECCCcceeeeeeecC-ccEEEEc-C----CCCEEEEE-EcCCeEEEEeCCCCCCCCCeeEEecC-
Q 019603 130 DSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFD-Q----QGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGG- 201 (338)
Q Consensus 130 ~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~~-~----~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~- 201 (338)
..++.++.||.|.-.|.++|+..-.+.... .+.+... + ++..++.. ..||.+..++...... ...+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~--~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ--KLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE--EEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE--Eeeeccccc
Confidence 467889999999999999998766665441 1222211 1 22333333 5788888888654211 00111000
Q ss_pred -CCCceEE----EEEcC----CCCEEEEEecCCcEEEEEccCCeeEEEeeeC
Q 019603 202 -DTAEVCD----IKFSN----DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 244 (338)
Q Consensus 202 -~~~~i~~----v~~sp----~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~ 244 (338)
...++.. +...+ .+..+++++.++.++-+|..+|+.+..+...
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 0011110 00000 3456788999999999999999988776543
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.96 E-value=3 Score=41.70 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=32.2
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEE
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTT 65 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 65 (338)
.+.++...++..+++|-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4667777788899999999999999999999988654
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=79.29 E-value=30 Score=29.83 Aligned_cols=115 Identities=7% Similarity=0.020 Sum_probs=65.9
Q ss_pred CCEEEEeeCCCcEEEEEcCCCeeEeEEeecccCeeeEEEeec----CCeeEEecCccCCCCCceeEEEEccCCeEEEeec
Q 019603 39 DDLLVTASDDDSVRLYDIVSAKLIKTTYHKKHGADCVCFTHH----PSSVICSTKYNLDSTGESLRYLSMYDNRILRYFK 114 (338)
Q Consensus 39 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 114 (338)
+.+++.++.||.|.-.|..+|+.+.++... .....+..... ...++... -..++.+..++..+|.....+.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~----p~~dG~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIE----PFGDGNIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEEC----CSTTTEEEEEETTTEEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEE----ECCCCEEEEEECCCCcEEeeec
Confidence 347888999999999999999988776543 10111111100 00111110 0234677777776664433221
Q ss_pred C----CccceEEE---EE-----cCCCCEEEEEECCCeEEEEECCCcceeeeeeec
Q 019603 115 G----HKERVISL---CM-----SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR 158 (338)
Q Consensus 115 ~----H~~~V~~l---~~-----~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~~ 158 (338)
- ...++..- .+ ...+..++.|+.++.+..-|+++|+.+..+...
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1 11222210 00 014567899999999999999999987666543
No 348
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.25 E-value=11 Score=38.52 Aligned_cols=38 Identities=21% Similarity=0.091 Sum_probs=32.0
Q ss_pred CCeeEEECCCCCEEEEEcCCCcEEEEECCCCCeEeEee
Q 019603 249 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 286 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~ 286 (338)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556677888999999999999999999999887753
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.44 E-value=3.6 Score=41.22 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=33.4
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee
Q 019603 118 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL 157 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~ 157 (338)
+.+.++...++..++++-+.|+++|+|++.+++|..+..+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567777888888999999999999999999998766543
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.02 E-value=42 Score=30.30 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=15.7
Q ss_pred CCeeEEECCCCCEEEEEcCCC
Q 019603 249 TNTEATFTPDGQYVVSGSGDG 269 (338)
Q Consensus 249 ~~~~~~fs~~~~~l~sgs~Dg 269 (338)
..-.++|.|||.+.++.+..+
T Consensus 140 ~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 140 LGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CEEEEEECTTSCEEEEECCTT
T ss_pred cCCcEeECCCCcEEEEeCCCC
Confidence 346799999998887766543
No 351
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.85 E-value=3.1 Score=42.57 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=31.8
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEe
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTY 66 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~ 66 (338)
.+.++...++..++++-+.|+++|+||+.++.++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788999999999999999999999887643
No 352
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=71.43 E-value=6.5 Score=37.68 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=29.7
Q ss_pred ceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEee
Q 019603 29 KINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYH 67 (338)
Q Consensus 29 ~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~ 67 (338)
.|.++.+ +..+|++-+.|+++|+||+.++.++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 478999999999999999999998866543
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=67.35 E-value=65 Score=28.26 Aligned_cols=169 Identities=11% Similarity=0.190 Sum_probs=92.9
Q ss_pred eEEEEECCCc--ceeeeeeecCc--------cEEEEc---C-----CCCEEEEEEcCCeEEEEeCCCCCC----------
Q 019603 140 SVRIWDLRVN--ACQGILRLRGR--------PTVAFD---Q-----QGLVFAVAMEAGAIKLFDSRSYDK---------- 191 (338)
Q Consensus 140 ~I~iWd~~~~--~~~~~~~~~~~--------~~~~~~---~-----~~~~~~~~~~dg~i~i~d~~~~~~---------- 191 (338)
.|-+||++++ +.++.+.+... ..+.++ + ++...++-...+.|-++|+++.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5777888888 77776665321 224555 2 233445555677888888765321
Q ss_pred CCCeeEEecCCC----CceEEEEEcCC----CCEEEEEecCC-cEEEEEc---cCCeeEEEee--eCCC-CCCCeeEEEC
Q 019603 192 GPFDTFLVGGDT----AEVCDIKFSND----GKSMLLTTTNN-NIYVLDA---YGGEKRCGFS--LEPS-PNTNTEATFT 256 (338)
Q Consensus 192 ~~~~~~~~~~~~----~~i~~v~~sp~----~~~i~~~~~d~-~i~i~~~---~~~~~~~~~~--~~~~-~~~~~~~~fs 256 (338)
.....+.+.|.. ..+..++++|+ ++.+......+ ..+-... ........++ +... .......++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 111223333332 36788999998 67776666544 3443331 1111111111 1111 1223345675
Q ss_pred -CCCCEEEEEcCCCcEEEEECCC-C---CeEeEee--CCCCceEEEEEcCCCceEEeec
Q 019603 257 -PDGQYVVSGSGDGTLHAWNINT-R---NEVACWN--GNIGVVACLKWAPRRAMFVAAS 308 (338)
Q Consensus 257 -~~~~~l~sgs~Dg~i~vWd~~~-~---~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s 308 (338)
.+|..+++--+...|.+|+..+ . +....+. ..-.+...+...+++.+.+.++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 6788888888899999999875 1 1222322 2234567777777777666554
No 354
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.15 E-value=9.3 Score=36.65 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeeee
Q 019603 119 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL 157 (338)
Q Consensus 119 ~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~~ 157 (338)
.|.++.+ +..++++-+.|+++|+||++++++..+..+
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554444 367999999999999999999998766555
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.00 E-value=32 Score=32.24 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=40.5
Q ss_pred eeEEECCCCCEEEEEcCC------------CcEEEEECCCCCeEeEeeCCC-CceEEEEEcCCCceEEee
Q 019603 251 TEATFTPDGQYVVSGSGD------------GTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 251 ~~~~fs~~~~~l~sgs~D------------g~i~vWd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~ 307 (338)
-.++|+|.|.+++.-..+ ..+.+.+..+++..+.+.++. ..++.+.|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 458999999987764432 235555666777766666554 678999999999877654
No 356
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.76 E-value=39 Score=31.53 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=41.0
Q ss_pred CeeEEECCCCCEEEEEcC------------CCcEEEEECCCCCeEeEeeCC-CCceEEEEEcCCCceEEee
Q 019603 250 NTEATFTPDGQYVVSGSG------------DGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 250 ~~~~~fs~~~~~l~sgs~------------Dg~i~vWd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~ 307 (338)
...+.|.++|.+.++... ...|+..+-.+++....+.+. ...++.++|+||++.|..+
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 456899999998884321 225667777677766666543 3568999999999877765
No 357
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.21 E-value=29 Score=32.51 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=38.3
Q ss_pred EEEEcCCCCEEEEEecC------------CcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE
Q 019603 208 DIKFSNDGKSMLLTTTN------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 208 ~v~~sp~~~~i~~~~~d------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg 265 (338)
-|.|+|.|.+++.--.+ +.+.+.+..+++..+.++.. ....++.++|+||++.|+..
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 47899999855543221 23556666667766555543 34578899999999988765
No 358
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=47.87 E-value=1.2e+02 Score=25.31 Aligned_cols=181 Identities=9% Similarity=0.040 Sum_probs=91.7
Q ss_pred EEeecCCCEEEEeeCC--------------CcEEEEEcCCCeeEeEEeecccCeeeEEEeecCCeeEEecCccCCCCCce
Q 019603 33 LDFHRKDDLLVTASDD--------------DSVRLYDIVSAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGES 98 (338)
Q Consensus 33 l~~s~~~~~l~s~s~D--------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
-.|+++|++|+=+... ..|+..++..+.... +.. .....++.....++.... . ......
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~----~~~~~~s~~g~~Iy~~~~-~-~~~~~~ 130 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP----DPCIYASLIGNYIYYLHY-D-TQTATS 130 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC----SCEEEEEEETTEEEEEEE-S-SSSCEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec----CCccEEEEeCCEEEEEee-c-CCCCce
Confidence 3468888877776543 356666776554221 111 112245556666654420 0 122356
Q ss_pred eEEEEccCCeEEEeecCCccceEEEEEcCCCCEEEEEEC-CCeEEEEECCCcceeeeeeecCccEEEEcCCCCEEEEEEc
Q 019603 99 LRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAME 177 (338)
Q Consensus 99 i~~~~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~-D~~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
|...++...+..+ +..+.. ..++++++.|+=.+. ...|.+-++..+.....+ .+.....+.|++..++-...
T Consensus 131 Iy~~~~dGs~~~~-lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~--~~~~~~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 131 LYRIRIDGEEKKK-IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY--DCNCYKPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEEEETTSCCCEE-EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE--CSCEEEEEEEETTEEEEEEG
T ss_pred EEEEECCCCCeEE-EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe--CCCccceeeecCCEEEEEEc
Confidence 7777776544333 333322 356778887764443 677777777655433222 22222345677776655443
Q ss_pred CC--eEEEEeCCCCCCCCCeeEEecCCCCceEEEEEcCCCCEEEEEec--CCcEEEEEccCCe
Q 019603 178 AG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGE 236 (338)
Q Consensus 178 dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~~--d~~i~i~~~~~~~ 236 (338)
.+ .|..-++..... .. +. ...+ ..|+|++++|..+.. .+.+...++....
T Consensus 204 ~~~~~I~~~~ldG~~~----~~-Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 204 NRDNAIVHVNINNPNP----VV-LT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp GGTTEEEEECSSSCCC----EE-CS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred CCCcEEEEEECCCCCe----EE-Ee--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 32 333333332111 11 11 1223 347888888877643 3556666665433
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.87 E-value=82 Score=29.40 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=38.6
Q ss_pred eEEEEEcCCCCEEEEEec------------CCcEEEEEccCCeeEEEeeeCCCCCCCeeEEECCCCCEEEEE
Q 019603 206 VCDIKFSNDGKSMLLTTT------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 265 (338)
Q Consensus 206 i~~v~~sp~~~~i~~~~~------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~l~sg 265 (338)
...|.|+++|.+.+.... .+.++.++..+++....+.. ......+.++|+||++.|+..
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEE
Confidence 556889999886553221 12567777667766544432 222457889999999988775
No 360
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=42.34 E-value=2.3e+02 Score=26.94 Aligned_cols=254 Identities=8% Similarity=0.104 Sum_probs=130.0
Q ss_pred CcceeEEEeecCCCEEEEeeCCCcEEEEEcCCCeeEeEEeec----ccCeeeEEEeecCCeeEEecCccCCCCCceeEEE
Q 019603 27 GGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAKLIKTTYHK----KHGADCVCFTHHPSSVICSTKYNLDSTGESLRYL 102 (338)
Q Consensus 27 ~~~V~~l~~s~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (338)
...|+++.-.++|.+-+ |..+| +-.||-..- +..... ...+.++.... ...+.+++ ...+..+
T Consensus 21 ~n~V~~I~qD~~G~lWi-gT~~G-L~ryDG~~~---~~~~~~~~~~~~~i~~i~~d~-~g~lWigT-------~~Gl~~y 87 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWI-GSNKG-LFSYDGYST---QQHFTYGENNNTRIYCGVIID-NTYLYMGT-------DNGILVY 87 (758)
T ss_dssp CCCEEEEEECTTSCEEE-EESSC-EEEECSSCE---EECSCTTSTTSSCEEEEEEET-TTEEEEEE-------TTEEEEE
T ss_pred cceEEEEEECCCCCEEE-EECCC-ccccCCCce---EEEEccCCCCCceEEEEEEcC-CCcEEEEe-------CCCeEEE
Confidence 46799998888886544 44566 556674321 111111 11233322221 22232322 1346677
Q ss_pred EccCCeEEEeecCCccceEEEEEcCCCCEEEEEECCCeEEEEECCCcceeeeee----ecCc--cEEEEcCCCCEEEEEE
Q 019603 103 SMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR----LRGR--PTVAFDQQGLVFAVAM 176 (338)
Q Consensus 103 ~~~~~~~~~~~~~H~~~V~~l~~~~~~~~l~Sgs~D~~I~iWd~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~ 176 (338)
|..+.+...........|.++... + ..|.-|+.+ .|..+|..+++...... .... ..+..+.+|.+.+ ++
T Consensus 88 d~~~~~f~~~~~~~~~~i~~i~~~-~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt 163 (758)
T 3ott_A 88 NYRADRYEQPETDFPTDVRTMALQ-G-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GT 163 (758)
T ss_dssp ETTTTEECCCSCCCCSCEEEEEEE-T-TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EE
T ss_pred eCCCCEEECcccCCCceEEEEEec-C-CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-Ee
Confidence 766554322111123457776543 3 456666665 68889987655422100 1111 2244456666554 44
Q ss_pred cCCeEEEEeCCCCCCCCCeeEEecC----CCCceEEEEEcCCCCEEEEEecCCcEEEEEccCCeeEEEeeeCCCCCCCee
Q 019603 177 EAGAIKLFDSRSYDKGPFDTFLVGG----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 252 (338)
Q Consensus 177 ~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~i~~v~~sp~~~~i~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 252 (338)
.. -+..++..... +..+.... ....|.++...+++..+.+++. +.+..++..+++........ ...+.+
T Consensus 164 ~~-Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~ 236 (758)
T 3ott_A 164 YN-GLCRYIPSNGK---FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKS 236 (758)
T ss_dssp TT-EEEEEETTTTE---EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEE
T ss_pred CC-CHhhCccCCCc---eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEE
Confidence 44 46667754321 11111110 1224777777777665555653 56888887766543221111 124667
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEeEeeC--------CCCceEEEEEcCCCceEEee
Q 019603 253 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG--------NIGVVACLKWAPRRAMFVAA 307 (338)
Q Consensus 253 ~~fs~~~~~l~sgs~Dg~i~vWd~~~~~~~~~~~~--------h~~~v~~l~~~p~~~~l~s~ 307 (338)
+...++|.+.+.. .+ -+.+++..+++.. .+.. ....|.+|.-..++.+.+..
T Consensus 237 i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 237 LALDGNGDLLAGT-DN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp EEECTTCCEEEEE-TT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred EEEcCCCCEEEEe-CC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 7777777766543 44 5788887765432 2211 22468888888777765554
No 361
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=36.41 E-value=33 Score=21.52 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.7
Q ss_pred eeeccCCcceeEEEeecCCCEEEE
Q 019603 21 AIFSDFGGKINSLDFHRKDDLLVT 44 (338)
Q Consensus 21 ~~~~~h~~~V~~l~~s~~~~~l~s 44 (338)
.....|.|.++.++....|++++|
T Consensus 43 ev~I~H~G~~Y~LR~Tr~GKLILT 66 (67)
T 2jra_A 43 EIVIAHGDDRYRLRLTSQNKLILT 66 (67)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEEEEeCCeEEEeEEccCCceeec
Confidence 344579999999999999999986
No 362
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=36.30 E-value=55 Score=30.59 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=47.9
Q ss_pred cceEEEEEcCCCCEE-EEEECCCeEEEEECCCcce---------ee----eeeecCcc-EEEEcCCCCEEEEEEcCCeEE
Q 019603 118 ERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNAC---------QG----ILRLRGRP-TVAFDQQGLVFAVAMEAGAIK 182 (338)
Q Consensus 118 ~~V~~l~~~~~~~~l-~Sgs~D~~I~iWd~~~~~~---------~~----~~~~~~~~-~~~~~~~~~~~~~~~~dg~i~ 182 (338)
+...++.++|+|+++ ++|-.+.++.++|+++-.. .. ..+..-.+ -..|+++|..+.+-.-|..|-
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 445577899999975 5677999999999874211 01 11111122 268999997777777899999
Q ss_pred EEeCC
Q 019603 183 LFDSR 187 (338)
Q Consensus 183 i~d~~ 187 (338)
-|++.
T Consensus 403 kWni~ 407 (638)
T 3sbq_A 403 KWNME 407 (638)
T ss_dssp EEEHH
T ss_pred EEecc
Confidence 99864
No 363
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=34.83 E-value=30 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.0
Q ss_pred eeccCCcceeEEEeecCCCEEEE
Q 019603 22 IFSDFGGKINSLDFHRKDDLLVT 44 (338)
Q Consensus 22 ~~~~h~~~V~~l~~s~~~~~l~s 44 (338)
....|.|.++.++....|++++|
T Consensus 40 v~I~H~G~~Y~LR~Tr~GKLILT 62 (63)
T 2loj_A 40 VIIDHNGQEYLLRKTQAGKLLLT 62 (63)
T ss_dssp EEEEETTEEEEEEEETTTEEEEE
T ss_pred EEEEeCCeEEEeEEccCCceeec
Confidence 44579999999999999999886
No 364
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=33.35 E-value=2e+02 Score=26.42 Aligned_cols=68 Identities=10% Similarity=0.034 Sum_probs=40.2
Q ss_pred eEEEEEcCCCC--EEEEEecCCcEEEEEccCC----eeEEEeeeCCCCCCCe-eEEECCCCCEEEEEcCCCcEEE
Q 019603 206 VCDIKFSNDGK--SMLLTTTNNNIYVLDAYGG----EKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGTLHA 273 (338)
Q Consensus 206 i~~v~~sp~~~--~i~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~~~~~-~~~fs~~~~~l~sgs~Dg~i~v 273 (338)
.+.+.....+. .+..|+.+|.|.-..+..+ .....+.......+|. .+.+++++.+|+.+++++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 55555544333 3556777787654433222 1223333333334564 7889999999999988876655
No 365
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.39 E-value=3.8e+02 Score=25.58 Aligned_cols=244 Identities=14% Similarity=0.110 Sum_probs=116.3
Q ss_pred eeEEE-eecCCCEEE-EeeCC----CcEEEEEcCCCeeEeE-EeecccC-------eeeEEEeecCCeeEEecCcc---C
Q 019603 30 INSLD-FHRKDDLLV-TASDD----DSVRLYDIVSAKLIKT-TYHKKHG-------ADCVCFTHHPSSVICSTKYN---L 92 (338)
Q Consensus 30 V~~l~-~s~~~~~l~-s~s~D----~~i~iWd~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~ 92 (338)
..++. ++|++++++ +-|.. ..++++|+++++.+.- +....+. ...++|. +.+.++.++.+. +
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 34566 899998544 33332 4599999999987631 1101111 0233554 445555443221 1
Q ss_pred CCC--CceeEEEEccCCe--EEEeecCCccc-eEEEEEcCCCC-----EEEEEECC---CeEEEEECCC--cceeeeeee
Q 019603 93 DST--GESLRYLSMYDNR--ILRYFKGHKER-VISLCMSPVND-----SFMSGSLD---HSVRIWDLRV--NACQGILRL 157 (338)
Q Consensus 93 ~~~--~~~i~~~~~~~~~--~~~~~~~H~~~-V~~l~~~~~~~-----~l~Sgs~D---~~I~iWd~~~--~~~~~~~~~ 157 (338)
..+ ...++.|.+.+.. -...+.+-... -.+...+++++ .+++.+.| ..+.+-|... ++.... ..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKI-NM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEEC-CS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEe-ec
Confidence 112 2468888876542 23334443333 23455667766 25555433 3445556542 221111 11
Q ss_pred cCccEEEEcCCCCEEEEE----------EcCCeEEEEeCCCCCC-----CCCeeEEecCCCCceEEEEEcCCCCEEEEEe
Q 019603 158 RGRPTVAFDQQGLVFAVA----------MEAGAIKLFDSRSYDK-----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 222 (338)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~----------~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~i~~v~~sp~~~~i~~~~ 222 (338)
.....+.....+.+++.. ...+.+...|+..... ......+.......+..+.+.++ ..+++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 289 PSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp CTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred CCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 111112222333333311 2356677777654321 12222233334456777888765 4555555
Q ss_pred cCCc--EEEEEccCCee-EEE-eeeCCCCCCCeeEEECCCCC-EEEEEcC---CCcEEEEECC
Q 019603 223 TNNN--IYVLDAYGGEK-RCG-FSLEPSPNTNTEATFTPDGQ-YVVSGSG---DGTLHAWNIN 277 (338)
Q Consensus 223 ~d~~--i~i~~~~~~~~-~~~-~~~~~~~~~~~~~~fs~~~~-~l~sgs~---Dg~i~vWd~~ 277 (338)
.++. +.+++..++.. ... ..+.. ...+....+++++. ++++.++ -+.++.+|+.
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5553 56677655541 111 22221 12344455566664 4444433 3568888876
No 366
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=25.28 E-value=2.3e+02 Score=25.74 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=34.4
Q ss_pred EEEEecCCcEEEEEcc-CCe-------eEEEeeeCCCCCCCeeEEECCCCCEEEEEcCCCcEEE
Q 019603 218 MLLTTTNNNIYVLDAY-GGE-------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 273 (338)
Q Consensus 218 i~~~~~d~~i~i~~~~-~~~-------~~~~~~~~~~~~~~~~~~fs~~~~~l~sgs~Dg~i~v 273 (338)
+..|+.+|.|.-.-.. .+. ....+.......+|..+.|+++.++|+.+++++.++|
T Consensus 424 ~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 424 MFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 5567777776543322 111 1122233223457788999999999999998886665
Done!