BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019604
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R C+ C +E ++ +PC HL +C C SL CP+C+S +V +S
Sbjct: 25 RTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 74
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKS 327
R C+ C +E V+ +PC HL +C C SL CP+C+
Sbjct: 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRG 334
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R C+ C ++ +PC HL +C C L CP+C++P V +S
Sbjct: 14 RTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRTFLS 62
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C ++ +PC HL C C ++ CP+C + T + MS
Sbjct: 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 291 CRNCRKEESCVLLLPCRHLCLCTVC-GSSLHTCPVCKSP 328
C+ C+ E C LLPC H LC+ C +S CP+C++P
Sbjct: 9 CQQCQAEAKCPKLLPCLH-TLCSGCLEASGMQCPICQAP 46
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C ++ +PC HL C C ++ CP+C + T + MS
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 74
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 302 LLLPCRHLCLCTVCGSSLHTCPVCK 326
+LLPCRH CLC C CP+C+
Sbjct: 29 VLLPCRHTCLCDGCVKYFQQCPMCR 53
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C ++ +PC HL C C ++ CP+C + T + MS
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 290 LCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKS 327
LC C +EE PC H C C + L +CPVC+S
Sbjct: 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRS 57
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHT-----CPVCK 326
+LC+ C + + V + PC HL +CT C +S CP C+
Sbjct: 335 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHT-----CPVCK 326
+LC+ C + + V + PC HL +CT C +S CP C+
Sbjct: 335 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHT-----CPVCK 326
+LC+ C + + V + PC HL +CT C +S CP C+
Sbjct: 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHT-----CPVCK 326
+LC+ C + + V + PC HL +CT C +S CP C+
Sbjct: 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,384,648
Number of Sequences: 62578
Number of extensions: 287200
Number of successful extensions: 689
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 18
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)