BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019604
(338 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D074|MGRN1_MOUSE E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1
SV=2
Length = 532
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 263 EDNGNKKINNCDHKDGDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL--- 319
E+ N++ D ++ DN S C C + L+LPCRHLCLCT C +L
Sbjct: 257 ENKNNQETKPSDDENSDNSSE-------CVVCLSDLRDTLILPCRHLCLCTSCADTLRYQ 309
Query: 320 -HTCPVCKSP 328
+ CP+C+ P
Sbjct: 310 ANNCPICRLP 319
>sp|Q5XIQ4|MGRN1_RAT E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1
PE=2 SV=1
Length = 533
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 263 EDNGNKKINNCDHKDGDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL--- 319
E+ N++ D ++ DN S C C + L+LPCRHLCLCT C +L
Sbjct: 258 ENKNNQETKPSDDENSDNSSE-------CVVCLSDLRDTLILPCRHLCLCTSCADTLRYQ 310
Query: 320 -HTCPVCKSP 328
+ CP+C+ P
Sbjct: 311 ANNCPICRLP 320
>sp|O60291|MGRN1_HUMAN E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1
SV=2
Length = 552
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 263 EDNGNKKINNCDHKDGDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL--- 319
E+ N++ D ++ DN S C C + L+LPCRHLCLCT C +L
Sbjct: 257 ENKNNQETKPSDDENSDN-------SNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQ 309
Query: 320 -HTCPVCKSP 328
+ CP+C+ P
Sbjct: 310 ANNCPICRLP 319
>sp|Q8JHV9|BIR7A_XENLA Baculoviral IAP repeat-containing protein 7-A OS=Xenopus laevis
GN=birc7-a PE=1 SV=1
Length = 401
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R+C+ C ++ +L +PC HL +CT C +L CP+C++ SV MS
Sbjct: 352 RMCKVCMDKDVSMLFVPCGHLVVCTECAPNLRHCPICRAAIRGSVRAFMS 401
>sp|A9ULZ2|BIR7B_XENLA Baculoviral IAP repeat-containing protein 7-B OS=Xenopus laevis
GN=birc7-b PE=2 SV=2
Length = 345
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R+C+ C ++ +L +PC HL +CT C +L CP+C++ SV MS
Sbjct: 296 RMCKVCMDKDVSMLFVPCGHLVVCTECAPNLRHCPICRAAIRGSVRAFMS 345
>sp|Q7ZUL9|MGRN1_DANRE Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1
PE=2 SV=1
Length = 529
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 263 EDNGNKKINNCDHKDGDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL--- 319
E+ N++ + + ++ DN S C C + L+LPCRHLCLC C +L
Sbjct: 255 ENRNNQETKSTEDENSDNSSE-------CVVCLSDLRDTLILPCRHLCLCNACADTLRYQ 307
Query: 320 -HTCPVCKSP 328
+ CP+C+ P
Sbjct: 308 ANNCPICRLP 317
>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2
Length = 438
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 280 NGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+GS+ +LC+ C E LPC H+ C C SS+ CP+C+ P T + V S
Sbjct: 380 SGSTSIPEEKLCKICYGAEYNTAFLPCGHVVACAKCASSVTKCPLCRKPFTDVMRVYFS 438
>sp|Q9LFH6|LUL2_ARATH Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana
GN=LUL2 PE=2 SV=1
Length = 299
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 30/242 (12%)
Query: 116 PFSFLGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRI-------------IM 162
P+ + + + + ++ I I+ E +R+E +E+ + + +M
Sbjct: 44 PYGEMASPVQYVEHQEAVTIRNDINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSITVM 103
Query: 163 DVIEEGVMKKLKAKEDEIEKIGKLNWA--LEERVKSLCIENQIWRDLAQSNEATANALRT 220
+EG L A ++++ ++++A LE+R K C + D+++++ AN
Sbjct: 104 FFAKEGKDCNLIATKEDLFPSTQVSFAKGLEQRFKQACGTGIDFSDMSEADLVEANETDV 163
Query: 221 NLEQVLASAAAQVKEGRAPAP----AALGLEEEVVDDAESCCGSS--WEDNGNK----KI 270
V A ++ + P + LE++ + ++ W NGN+ +I
Sbjct: 164 YHVAVKAEVVSEDDHPESGTPNRQITHVVLEKDHKGEYKARVVKQILWV-NGNRYVLQEI 222
Query: 271 NNCDHKDGDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCK 326
+ DNG + + C C E +LPCRH+C+C+ C L + CP+C+
Sbjct: 223 YGIGNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICR 282
Query: 327 SP 328
P
Sbjct: 283 QP 284
>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor OS=Drosophila melanogaster GN=Iap2 PE=2 SV=3
Length = 498
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKS 327
+RLC+ C EE V+ LPC HL C C S+ CP+C++
Sbjct: 448 ARLCKVCLDEEVGVVFLPCGHLATCNQCAPSVANCPMCRA 487
>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens
GN=BIRC3 PE=1 SV=2
Length = 604
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R C+ C +E ++ +PC HL +C C SL CP+C+S +V +S
Sbjct: 555 RTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 604
>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus
GN=Birc3 PE=1 SV=2
Length = 600
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R+C+ C E ++ +PC HL +C C SL CP+C+ +V +S
Sbjct: 551 RMCKVCMDREVSIVFIPCGHLVVCKDCAPSLRKCPICRGTIKGTVRTFLS 600
>sp|A9JTP3|BIRC7_XENTR Baculoviral IAP repeat-containing protein 7 OS=Xenopus tropicalis
GN=birc7 PE=2 SV=1
Length = 365
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R+C+ C + ++ +PC HL +CT C +L CP+C++ SV MS
Sbjct: 316 RMCKVCMDNDVSMVFVPCGHLVVCTECAPNLRHCPICRAAIRGSVRAFMS 365
>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana
GN=LUL4 PE=2 SV=1
Length = 359
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 280 NGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSP 328
+G SG C C E +LPCRHLC+C+ C L + CP+C+ P
Sbjct: 291 SGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQP 343
>sp|Q13490|BIRC2_HUMAN Baculoviral IAP repeat-containing protein 2 OS=Homo sapiens
GN=BIRC2 PE=1 SV=2
Length = 618
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCK 326
R C+ C +E V+ +PC HL +C C SL CP+C+
Sbjct: 569 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICR 606
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana
GN=LUL3 PE=1 SV=1
Length = 378
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 281 GSSHSG----GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSP 328
G++ SG G + C C E ++PCRHLCLC+ C L + CP+C+ P
Sbjct: 307 GTAASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQP 362
>sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2
Length = 685
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 269 KINNCDHKDGDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPV 324
K N D K ++ S + S C C + L+LPCRHLCLC C +L + CP+
Sbjct: 257 KYNTQDSKVAEDDVSDN--SAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPI 314
Query: 325 CKSP 328
C+ P
Sbjct: 315 CRLP 318
>sp|Q62210|BIRC2_MOUSE Baculoviral IAP repeat-containing protein 2 OS=Mus musculus
GN=Birc2 PE=1 SV=1
Length = 612
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R C+ C E ++ +PC HL +C C SL CP+C+ +V +S
Sbjct: 563 RTCKVCMDREVSIVFIPCGHLVVCQECAPSLRKCPICRGTIKGTVRTFLS 612
>sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein OS=Gallus gallus GN=ITA PE=2 SV=1
Length = 611
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R C+ C +E ++ +PC HL +C C SL CP+C+ +V +S
Sbjct: 562 RTCKVCMDKEVSIVFIPCGHLVVCKECAPSLRKCPICRGTIKGTVRTFLS 611
>sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3
Length = 679
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 285 SGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSP 328
S S C C + L+LPCRHLCLC C +L + CP+C+ P
Sbjct: 271 SDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLP 318
>sp|A1E2V0|BIRC3_CANFA Baculoviral IAP repeat-containing protein 3 OS=Canis familiaris
GN=BIRC3 PE=2 SV=1
Length = 604
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R C+ C +E ++ +PC HL +C C SL CP+C+ +V +S
Sbjct: 555 RTCKVCMDKEVSIVFIPCGHLVVCRDCAPSLRKCPICRGTVRGTVRTFLS 604
>sp|Q6INH1|RN157_XENLA RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1
Length = 674
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 291 CRNCRKEESCVLLLPCRHLCLCTVCGSSLH----TCPVCKSP 328
C C + L+LPCRHLCLC C +L CP+C+ P
Sbjct: 277 CVVCLSDVRDTLILPCRHLCLCNACADTLRYQASNCPICRLP 318
>sp|Q9LYW5|LUL1_ARATH Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana
GN=LUL1 PE=1 SV=1
Length = 337
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 279 DNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVH 334
+N S + C C E +LPCRH+C+C+ C +L + CPVC+ P + +
Sbjct: 273 ENTVDGSDEGKECVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLLE 332
Query: 335 VN 336
+N
Sbjct: 333 IN 334
>sp|O62640|PIAP_PIG Putative inhibitor of apoptosis OS=Sus scrofa GN=PIAP PE=2 SV=1
Length = 358
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
R C+ C +E ++ +PC HL +C C SL CP+C+ +V +S
Sbjct: 309 RTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRGTIKGTVRTFLS 358
>sp|Q3UE17|MEX3D_MOUSE RNA-binding protein MEX3D OS=Mus musculus GN=Mex3d PE=2 SV=2
Length = 643
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 288 SRLCRNCRKEESCVLLLPCRHLCLCT-----VCGSSLHTCPVCKSPKTVSVHV 335
+R C C + E+ L+PC H C +CG S CP C++P T ++H+
Sbjct: 589 ARECVVCSEGEAMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHI 641
>sp|Q8BMJ7|CGRF1_MOUSE Cell growth regulator with RING finger domain protein 1 OS=Mus
musculus GN=Cgrrf1 PE=2 SV=1
Length = 332
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 278 GDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCK 326
G++G SR C C+ +LLPCRH CLC C CP+C+
Sbjct: 261 GNDGDPVEESSRDCVVCQNGGVNWVLLPCRHACLCDSCVRYFKQCPMCR 309
>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
Length = 943
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 291 CRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKS 327
C C ++LLPCRH LC+ C S L CP+C+S
Sbjct: 897 CVICASNPPNIVLLPCRHSSLCSDCCSKLTKCPICRS 933
>sp|P41436|IAP_GVCPM Apoptosis inhibitor IAP OS=Cydia pomonella granulosis virus
(isolate Mexico/1963) GN=IAP PE=4 SV=1
Length = 275
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
S+LC+ C EE V +PC H+ C C S+ CP+C+ T + V S
Sbjct: 225 SKLCKICYVEECIVCFVPCGHVVACAKCALSVDKCPMCRKIVTSVLKVYFS 275
>sp|Q86XN8|MEX3D_HUMAN RNA-binding protein MEX3D OS=Homo sapiens GN=MEX3D PE=1 SV=3
Length = 651
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 288 SRLCRNCRKEESCVLLLPCRHLCLCT-----VCGSSLHTCPVCKSPKTVSVHV 335
+R C C + E L+PC H C +CG S CP C++P T ++H+
Sbjct: 597 ARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHI 649
>sp|P41437|IAP3_NPVOP E3 ubiquitin-protein ligase IAP-3 OS=Orgyia pseudotsugata
multicapsid polyhedrosis virus GN=IAP3 PE=1 SV=1
Length = 268
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKS 327
RLC+ C E V +PC H+ C C + + TCPVC+
Sbjct: 218 DRLCKICLGAEKTVCFVPCGHVVACGKCAAGVTTCPVCRG 257
>sp|Q557E7|CBLA_DICDI E3 ubiquitin-protein ligase cblA OS=Dictyostelium discoideum
GN=cblA-1 PE=1 SV=1
Length = 665
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 277 DGDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHV 335
+ +NGS S LC C E + L C HL C++C L CP+C+S T +++
Sbjct: 606 NNNNGSDESKD--LCTVCMDNEINTVFLECGHLSCCSLCSVKLKKCPICRSRITRVINI 662
>sp|O55756|VF157_IIV6 Putative RING finger protein 157L OS=Invertebrate iridescent virus
6 GN=IIV6-157L PE=3 SV=1
Length = 152
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 277 DGDNGSSHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKS 327
+ N S C C + E C+ + PC H +C C + L+TCP+C+S
Sbjct: 97 EATNDKKASSIDSRCVVCYENEICIKIQPCNHFVVCKSCFNRLNTCPMCRS 147
>sp|Q8BUH7|RNF26_MOUSE Ring finger protein 26 OS=Mus musculus GN=Rnf26 PE=2 SV=1
Length = 424
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 291 CRNCRKEESCVLLLPCRHLCLCTVCGSSL-------HTCPVCK 326
C C+ + VLLLPCRHLCLC C L CP+C+
Sbjct: 371 CVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCR 413
>sp|Q9S752|LOFG2_ARATH Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana
GN=LOG2 PE=1 SV=1
Length = 388
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 291 CRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSP 328
C C E +LPCRH+C+C+ C L + CP+C+ P
Sbjct: 319 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 360
>sp|Q60989|XIAP_MOUSE E3 ubiquitin-protein ligase XIAP OS=Mus musculus GN=Xiap PE=1 SV=2
Length = 496
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C ++ +PC HL C C ++ CP+C + T + MS
Sbjct: 447 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 496
>sp|P98170|XIAP_HUMAN E3 ubiquitin-protein ligase XIAP OS=Homo sapiens GN=XIAP PE=1 SV=2
Length = 497
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C ++ +PC HL C C ++ CP+C + T + MS
Sbjct: 448 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 497
>sp|Q9BY78|RNF26_HUMAN RING finger protein 26 OS=Homo sapiens GN=RNF26 PE=2 SV=1
Length = 433
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 291 CRNCRKEESCVLLLPCRHLCLCTVCGSSL-------HTCPVCK 326
C C+ + VLLLPCRHLCLC C L CP+C+
Sbjct: 380 CVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCR 422
>sp|Q8WZ73|RFFL_HUMAN E3 ubiquitin-protein ligase rififylin OS=Homo sapiens GN=RFFL PE=1
SV=1
Length = 363
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 276 KDGDNGSSHSG-GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVH 334
+D + G+ SG LC+ C +LL C H+ CT CG ++ CP+C+ +VH
Sbjct: 300 EDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVH 359
Query: 335 V 335
V
Sbjct: 360 V 360
>sp|Q6ZQM0|RFFL_MOUSE E3 ubiquitin-protein ligase rififylin OS=Mus musculus GN=Rffl PE=1
SV=1
Length = 377
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 276 KDGDNGSSHSG-GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVH 334
+D + G+ SG LC+ C +LL C H+ CT CG ++ CP+C+ +VH
Sbjct: 314 EDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVH 373
Query: 335 VNMS 338
V S
Sbjct: 374 VFRS 377
>sp|A5D8Q0|XIAP_XENLA E3 ubiquitin-protein ligase XIAP OS=Xenopus laevis GN=xiap PE=2
SV=2
Length = 488
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVC 325
++C+ C ++ +PC HL C VC L CP+C
Sbjct: 439 KVCKVCMDRRITIVFIPCGHLVACAVCADVLDKCPIC 475
>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus norvegicus GN=Rffl
PE=1 SV=1
Length = 362
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 275 HKDGDNGSSHSG-GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSV 333
++D + G+ SG LC+ C +LL C H+ CT CG ++ CP+C+ +V
Sbjct: 298 NEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAV 357
Query: 334 HVNMS 338
HV S
Sbjct: 358 HVFRS 362
>sp|Q5BKL8|XIAP_XENTR E3 ubiquitin-protein ligase XIAP OS=Xenopus tropicalis GN=xiap PE=2
SV=1
Length = 492
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVC 325
++C+ C ++ +PC HL C VC L CP+C
Sbjct: 443 KICKVCMDRRISIVFIPCGHLVACAVCADVLDKCPIC 479
>sp|Q86B79|UNK_DROME RING finger protein unkempt OS=Drosophila melanogaster GN=unk PE=1
SV=1
Length = 599
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHV 335
++ C C + V L PC HL +C C S+ CP C+ P ++ H
Sbjct: 552 NAKKCMKCEENNRTVTLEPCNHLSICNTCAESVTECPYCQVP-VITTHT 599
>sp|Q95M72|BIRC8_PANTR Baculoviral IAP repeat-containing protein 8 OS=Pan troglodytes
GN=BIRC8 PE=2 SV=1
Length = 236
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C V+ +PC HL C C ++ CP+C + V MS
Sbjct: 187 KLCKICMDRHIAVVFIPCGHLVTCKQCAEAVDRCPMCSAVIDFKQRVFMS 236
>sp|Q95M71|BIRC8_GORGO Baculoviral IAP repeat-containing protein 8 OS=Gorilla gorilla
gorilla GN=BIRC8 PE=2 SV=1
Length = 236
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C V+ +PC HL C C ++ CP+C + V MS
Sbjct: 187 KLCKICMDRHIAVVFIPCGHLVTCKQCAEAVDRCPMCNAVIDFKQRVFMS 236
>sp|Q8RHM3|GLMU_FUSNN Bifunctional protein GlmU OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=glmU PE=3 SV=1
Length = 446
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 50 SGTATTAEAFLPTVVYGSSINSDSFPHQKPLINKSDSSLTYNNYENNNLPLTPSRKRSRE 109
+G T ++ LP VV+ H KP+I + +L + E N L L R++ E
Sbjct: 8 AGKGTRMKSDLPKVVH--------LAHGKPMIVRIIDALNTLDVEENILILGHKREKVLE 59
Query: 110 SCSTPTPFSFLGNDMSFQIQEQQFDIDRLISQHMEKVR 147
LGND+S+ +QE+Q + Q + K++
Sbjct: 60 ---------VLGNDVSYVVQEEQLGTGHAVKQAIPKIK 88
>sp|Q5E9J6|RNF34_BOVIN E3 ubiquitin-protein ligase RNF34 OS=Bos taurus GN=RNF34 PE=2 SV=1
Length = 375
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 290 LCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHV 335
LCR C +LL C H+ CT CG + CP+C+ +VHV
Sbjct: 327 LCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHV 372
>sp|Q96P09|BIRC8_HUMAN Baculoviral IAP repeat-containing protein 8 OS=Homo sapiens
GN=BIRC8 PE=1 SV=2
Length = 236
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C V+ +PC HL C C ++ CP+C + V MS
Sbjct: 187 KLCKICMDRHIAVVFIPCGHLVTCKQCAEAVDRCPMCSAVIDFKQRVFMS 236
>sp|Q5NVC7|RNF34_PONAB E3 ubiquitin-protein ligase RNF34 OS=Pongo abelii GN=RNF34 PE=2
SV=2
Length = 372
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 290 LCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHV 335
LCR C +LL C H+ CT CG + CP+C+ +VHV
Sbjct: 324 LCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHV 369
>sp|Q969K3|RNF34_HUMAN E3 ubiquitin-protein ligase RNF34 OS=Homo sapiens GN=RNF34 PE=1
SV=1
Length = 372
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 290 LCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHV 335
LCR C +LL C H+ CT CG + CP+C+ +VHV
Sbjct: 324 LCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHV 369
>sp|Q9R0I6|XIAP_RAT E3 ubiquitin-protein ligase XIAP OS=Rattus norvegicus GN=Xiap PE=2
SV=1
Length = 496
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338
+LC+ C ++ +PC HL C C ++ CP+C + T + MS
Sbjct: 447 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCCTVITFKQKIFMS 496
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,947,590
Number of Sequences: 539616
Number of extensions: 5604157
Number of successful extensions: 18287
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 18065
Number of HSP's gapped (non-prelim): 370
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)