Query 019604
Match_columns 338
No_of_seqs 247 out of 1173
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 2.9E-39 6.3E-44 297.0 10.7 193 123-337 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.3 4.3E-13 9.4E-18 131.4 2.9 52 286-337 288-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 99.0 6.2E-11 1.3E-15 85.6 1.7 43 289-331 3-49 (50)
4 KOG4172 Predicted E3 ubiquitin 99.0 1.4E-11 3E-16 92.1 -3.1 50 289-338 8-62 (62)
5 KOG4275 Predicted E3 ubiquitin 98.9 8.8E-11 1.9E-15 113.0 -1.4 51 288-338 300-350 (350)
6 KOG1571 Predicted E3 ubiquitin 98.8 8.8E-10 1.9E-14 108.5 0.4 53 286-338 303-355 (355)
7 KOG0978 E3 ubiquitin ligase in 97.9 4E-05 8.7E-10 81.9 10.0 45 286-331 641-690 (698)
8 KOG1785 Tyrosine kinase negati 97.9 3.2E-06 7E-11 84.9 0.8 52 284-336 365-422 (563)
9 PLN03208 E3 ubiquitin-protein 97.7 3.5E-05 7.6E-10 71.1 3.9 43 288-331 18-80 (193)
10 PF14634 zf-RING_5: zinc-RING 97.7 2.4E-05 5.2E-10 55.2 2.2 36 291-327 2-44 (44)
11 PF13923 zf-C3HC4_2: Zinc fing 97.7 1.6E-05 3.4E-10 54.6 1.0 34 291-325 1-39 (39)
12 PHA02929 N1R/p28-like protein; 97.6 3.9E-05 8.6E-10 72.8 3.4 46 289-335 175-232 (238)
13 KOG0317 Predicted E3 ubiquitin 97.5 6.1E-05 1.3E-09 73.0 2.7 51 285-336 236-290 (293)
14 smart00184 RING Ring finger. E 97.4 0.0001 2.2E-09 47.8 2.5 34 291-325 1-39 (39)
15 PF13639 zf-RING_2: Ring finge 97.4 3.8E-05 8.3E-10 53.8 0.4 36 290-326 2-44 (44)
16 cd00162 RING RING-finger (Real 97.4 0.0001 2.3E-09 49.5 2.2 39 290-329 1-45 (45)
17 KOG0823 Predicted E3 ubiquitin 97.4 8.8E-05 1.9E-09 69.9 2.5 48 286-334 45-99 (230)
18 KOG0320 Predicted E3 ubiquitin 97.1 0.00014 3E-09 66.4 0.9 49 288-337 131-187 (187)
19 PF00097 zf-C3HC4: Zinc finger 97.1 0.00018 4E-09 49.2 1.0 34 291-325 1-41 (41)
20 PF14447 Prok-RING_4: Prokaryo 97.1 0.00027 5.8E-09 53.1 1.5 43 288-331 7-51 (55)
21 TIGR00599 rad18 DNA repair pro 97.0 0.00032 7E-09 71.0 1.9 46 285-331 23-72 (397)
22 PHA02926 zinc finger-like prot 96.8 0.00038 8.2E-09 65.7 0.7 45 288-333 170-233 (242)
23 PF15227 zf-C3HC4_4: zinc fing 96.6 0.00093 2E-08 47.1 1.5 34 291-325 1-42 (42)
24 smart00504 Ubox Modified RING 96.5 0.0018 4E-08 47.7 2.5 42 289-331 2-47 (63)
25 KOG2177 Predicted E3 ubiquitin 96.5 0.00086 1.9E-08 59.9 0.6 40 287-327 12-55 (386)
26 KOG2164 Predicted E3 ubiquitin 96.3 0.0019 4.1E-08 66.9 2.0 43 288-331 186-237 (513)
27 PF13445 zf-RING_UBOX: RING-ty 96.2 0.0017 3.8E-08 46.3 0.7 27 291-319 1-31 (43)
28 COG5574 PEX10 RING-finger-cont 96.1 0.0021 4.6E-08 61.9 1.2 42 288-330 215-262 (271)
29 COG5540 RING-finger-containing 95.7 0.0071 1.5E-07 59.6 2.7 42 288-330 323-372 (374)
30 COG5432 RAD18 RING-finger-cont 95.5 0.0056 1.2E-07 60.1 1.1 45 286-331 23-71 (391)
31 COG5236 Uncharacterized conser 95.4 0.011 2.4E-07 59.2 3.0 46 286-332 59-110 (493)
32 KOG0287 Postreplication repair 95.1 0.0063 1.4E-07 60.7 0.2 46 286-332 21-70 (442)
33 KOG0802 E3 ubiquitin ligase [P 94.9 0.0084 1.8E-07 62.8 0.4 42 288-330 291-341 (543)
34 KOG4692 Predicted E3 ubiquitin 94.5 0.016 3.4E-07 58.2 1.4 44 286-330 420-467 (489)
35 PF12678 zf-rbx1: RING-H2 zinc 94.5 0.019 4.1E-07 44.9 1.4 27 299-326 43-73 (73)
36 COG5243 HRD1 HRD ubiquitin lig 94.3 0.017 3.8E-07 58.3 1.1 44 285-329 284-344 (491)
37 KOG4628 Predicted E3 ubiquitin 94.2 0.027 5.9E-07 56.4 2.2 43 289-332 230-280 (348)
38 KOG2879 Predicted E3 ubiquitin 92.7 0.11 2.4E-06 50.7 3.5 45 285-330 236-287 (298)
39 PF04641 Rtf2: Rtf2 RING-finge 92.3 0.13 2.8E-06 49.2 3.5 46 286-332 111-163 (260)
40 KOG0825 PHD Zn-finger protein 92.0 0.12 2.6E-06 56.5 3.2 45 289-334 124-175 (1134)
41 KOG3039 Uncharacterized conser 91.6 0.12 2.7E-06 49.8 2.4 44 287-331 220-271 (303)
42 KOG1103 Predicted coiled-coil 91.3 4 8.8E-05 41.6 12.8 41 119-159 135-185 (561)
43 KOG1039 Predicted E3 ubiquitin 91.0 0.11 2.3E-06 52.2 1.5 46 287-333 160-224 (344)
44 PF14835 zf-RING_6: zf-RING of 90.8 0.12 2.6E-06 40.3 1.2 41 288-329 7-50 (65)
45 PF04216 FdhE: Protein involve 90.6 0.72 1.6E-05 44.5 6.7 48 288-336 172-228 (290)
46 KOG2113 Predicted RNA binding 90.2 0.25 5.5E-06 49.2 3.2 49 287-335 342-392 (394)
47 KOG1813 Predicted E3 ubiquitin 90.2 0.11 2.4E-06 51.0 0.8 45 290-335 243-291 (313)
48 KOG1814 Predicted E3 ubiquitin 89.8 0.14 3E-06 52.3 1.2 40 288-328 184-238 (445)
49 PF00038 Filament: Intermediat 89.8 19 0.00042 34.5 16.7 97 127-227 181-283 (312)
50 COG5152 Uncharacterized conser 89.4 0.1 2.2E-06 49.0 -0.2 46 289-335 197-246 (259)
51 PF15619 Lebercilin: Ciliary p 88.9 16 0.00035 33.8 13.9 93 127-225 51-151 (194)
52 KOG4159 Predicted E3 ubiquitin 88.7 0.2 4.2E-06 51.2 1.3 45 286-331 82-130 (398)
53 PF04564 U-box: U-box domain; 88.4 0.31 6.8E-06 37.8 2.0 44 287-331 3-51 (73)
54 PF09726 Macoilin: Transmembra 88.0 20 0.00044 39.3 16.0 54 170-223 544-597 (697)
55 KOG0804 Cytoplasmic Zn-finger 86.7 31 0.00066 36.3 15.5 89 125-213 327-424 (493)
56 KOG3002 Zn finger protein [Gen 86.4 0.41 9E-06 47.1 2.0 43 287-331 47-92 (299)
57 KOG1001 Helicase-like transcri 85.0 0.31 6.7E-06 52.9 0.4 40 289-330 455-500 (674)
58 KOG2932 E3 ubiquitin ligase in 84.5 0.39 8.4E-06 47.8 0.8 43 287-331 89-135 (389)
59 KOG0163 Myosin class VI heavy 82.5 16 0.00035 40.7 11.9 50 176-226 954-1007(1259)
60 PF11559 ADIP: Afadin- and alp 82.5 32 0.00069 29.9 11.9 44 170-213 58-101 (151)
61 KOG0828 Predicted E3 ubiquitin 81.7 0.51 1.1E-05 49.5 0.4 45 286-331 569-635 (636)
62 smart00787 Spc7 Spc7 kinetocho 80.8 20 0.00044 35.5 11.2 28 172-199 212-239 (312)
63 PF07888 CALCOCO1: Calcium bin 80.8 79 0.0017 34.0 16.0 76 141-218 171-246 (546)
64 PF10205 KLRAQ: Predicted coil 80.5 17 0.00037 30.8 9.0 59 139-202 10-71 (102)
65 KOG0311 Predicted E3 ubiquitin 80.4 0.19 4E-06 50.6 -3.1 46 286-332 41-92 (381)
66 COG5220 TFB3 Cdk activating ki 80.4 0.39 8.4E-06 46.4 -0.9 39 288-327 10-61 (314)
67 PF00804 Syntaxin: Syntaxin; 80.3 23 0.0005 27.6 9.4 83 140-225 13-102 (103)
68 PF10272 Tmpp129: Putative tra 79.1 1.7 3.6E-05 44.1 3.0 34 285-329 300-350 (358)
69 KOG0980 Actin-binding protein 78.8 70 0.0015 36.3 15.3 56 171-226 452-507 (980)
70 smart00338 BRLZ basic region l 78.8 25 0.00054 26.4 8.9 32 173-204 28-59 (65)
71 PF12126 DUF3583: Protein of u 77.9 79 0.0017 31.6 14.3 42 124-169 25-66 (324)
72 PF14362 DUF4407: Domain of un 76.3 60 0.0013 31.3 12.8 59 131-200 106-164 (301)
73 TIGR01837 PHA_granule_1 poly(h 75.6 34 0.00074 29.1 9.7 65 134-198 45-116 (118)
74 PF01166 TSC22: TSC-22/dip/bun 75.5 3.7 8.1E-05 31.5 3.3 32 177-208 13-44 (59)
75 PF04710 Pellino: Pellino; In 75.5 0.9 2E-05 46.5 0.0 41 297-337 356-411 (416)
76 PF11180 DUF2968: Protein of u 75.3 68 0.0015 30.1 12.1 76 123-200 104-183 (192)
77 TIGR03752 conj_TIGR03752 integ 75.3 29 0.00064 36.5 10.8 53 123-181 63-115 (472)
78 smart00744 RINGv The RING-vari 74.9 1.9 4E-05 31.4 1.5 36 290-326 1-49 (49)
79 KOG0971 Microtubule-associated 74.8 52 0.0011 37.5 13.0 102 125-226 370-503 (1243)
80 PRK10884 SH3 domain-containing 74.8 25 0.00054 32.9 9.4 57 142-203 101-157 (206)
81 KOG4673 Transcription factor T 73.8 46 0.00099 36.9 12.0 60 165-227 471-530 (961)
82 PF13815 Dzip-like_N: Iguana/D 72.8 15 0.00033 31.0 6.8 66 119-201 52-117 (118)
83 KOG2113 Predicted RNA binding 71.4 1.6 3.4E-05 43.7 0.6 49 286-334 134-187 (394)
84 KOG1002 Nucleotide excision re 71.3 1.2 2.7E-05 47.2 -0.2 43 286-329 534-585 (791)
85 KOG1916 Nuclear protein, conta 70.5 1.8E+02 0.004 33.6 15.9 15 82-96 816-830 (1283)
86 PF06785 UPF0242: Uncharacteri 70.5 1.2E+02 0.0025 31.1 13.2 106 125-231 91-219 (401)
87 PRK09039 hypothetical protein; 70.4 1.2E+02 0.0026 30.3 15.3 53 176-228 135-187 (343)
88 PRK12704 phosphodiesterase; Pr 70.2 1.5E+02 0.0033 31.5 14.9 11 296-306 247-257 (520)
89 TIGR01562 FdhE formate dehydro 69.7 15 0.00033 36.4 7.0 41 288-329 184-234 (305)
90 KOG3091 Nuclear pore complex, 68.7 47 0.001 35.2 10.6 20 179-198 377-396 (508)
91 PF12240 Angiomotin_C: Angiomo 68.7 1.1E+02 0.0023 29.0 13.0 79 134-221 69-165 (205)
92 KOG0977 Nuclear envelope prote 68.6 62 0.0014 34.8 11.6 70 141-210 113-188 (546)
93 PF04799 Fzo_mitofusin: fzo-li 68.1 43 0.00094 30.8 9.1 53 154-210 103-155 (171)
94 PF04380 BMFP: Membrane fusoge 68.0 37 0.00081 26.9 7.7 53 146-198 25-77 (79)
95 PF15397 DUF4618: Domain of un 67.9 1.3E+02 0.0027 29.5 12.7 79 130-208 135-223 (258)
96 COG4985 ABC-type phosphate tra 67.9 31 0.00068 33.5 8.4 21 119-139 157-177 (289)
97 KOG0297 TNF receptor-associate 67.8 2.7 5.9E-05 42.6 1.4 49 286-335 19-72 (391)
98 PF09731 Mitofilin: Mitochondr 67.6 1.7E+02 0.0037 30.9 15.6 19 189-207 382-400 (582)
99 PF12329 TMF_DNA_bd: TATA elem 67.5 59 0.0013 25.6 9.4 15 170-184 4-18 (74)
100 KOG4797 Transcriptional regula 67.2 27 0.00058 30.1 7.0 32 177-208 66-97 (123)
101 KOG3842 Adaptor protein Pellin 66.9 3.6 7.7E-05 41.4 2.0 47 285-331 338-415 (429)
102 COG2433 Uncharacterized conser 66.6 47 0.001 36.2 10.2 27 171-197 474-500 (652)
103 PF09744 Jnk-SapK_ap_N: JNK_SA 66.4 95 0.0021 28.0 10.8 76 122-210 39-114 (158)
104 TIGR03319 YmdA_YtgF conserved 66.3 1.8E+02 0.004 30.8 14.9 12 296-307 241-252 (514)
105 PF13935 Ead_Ea22: Ead/Ea22-li 66.0 56 0.0012 28.4 9.1 56 129-191 80-139 (139)
106 KOG4571 Activating transcripti 65.8 24 0.00051 35.0 7.3 32 176-207 253-284 (294)
107 KOG0612 Rho-associated, coiled 65.8 1.1E+02 0.0023 36.1 13.2 89 134-227 465-553 (1317)
108 KOG0288 WD40 repeat protein Ti 65.4 1.4E+02 0.0031 31.2 13.0 65 126-194 2-71 (459)
109 KOG4343 bZIP transcription fac 65.1 77 0.0017 34.2 11.3 37 168-204 306-342 (655)
110 PF09726 Macoilin: Transmembra 64.8 1.8E+02 0.0039 32.2 14.5 36 190-225 543-578 (697)
111 PRK11637 AmiB activator; Provi 64.8 1.7E+02 0.0036 29.8 13.9 29 172-200 90-118 (428)
112 PRK10920 putative uroporphyrin 63.9 81 0.0017 32.4 11.0 84 120-205 50-134 (390)
113 PF07111 HCR: Alpha helical co 63.7 2.1E+02 0.0045 31.9 14.5 73 127-199 95-183 (739)
114 PF14570 zf-RING_4: RING/Ubox 62.8 3 6.4E-05 30.7 0.4 24 305-329 19-47 (48)
115 PF05121 GvpK: Gas vesicle pro 61.9 51 0.0011 27.3 7.4 37 164-200 28-67 (88)
116 smart00338 BRLZ basic region l 61.2 67 0.0014 24.0 7.8 47 168-220 15-61 (65)
117 PF07412 Geminin: Geminin; In 60.9 37 0.0008 32.0 7.4 46 143-191 105-152 (200)
118 PF03854 zf-P11: P-11 zinc fin 60.6 3.6 7.7E-05 30.5 0.5 42 290-333 4-49 (50)
119 smart00502 BBC B-Box C-termina 60.6 86 0.0019 25.1 13.1 55 124-182 29-83 (127)
120 PF00038 Filament: Intermediat 59.8 1.7E+02 0.0036 28.1 12.4 102 119-226 8-116 (312)
121 KOG0249 LAR-interacting protei 59.5 75 0.0016 35.5 10.2 85 139-227 168-258 (916)
122 PF10367 Vps39_2: Vacuolar sor 59.4 5.7 0.00012 31.7 1.6 28 289-317 79-108 (109)
123 PRK00888 ftsB cell division pr 58.4 33 0.00071 28.7 6.0 36 171-206 27-62 (105)
124 PF12861 zf-Apc11: Anaphase-pr 57.9 7 0.00015 32.0 1.8 40 290-330 34-82 (85)
125 PF05290 Baculo_IE-1: Baculovi 57.6 4.7 0.0001 35.8 0.8 45 288-333 80-135 (140)
126 PF10226 DUF2216: Uncharacteri 57.6 1.5E+02 0.0033 27.8 10.6 87 120-210 42-140 (195)
127 smart00503 SynN Syntaxin N-ter 57.3 1E+02 0.0022 24.8 11.0 85 140-228 14-104 (117)
128 PF15066 CAGE1: Cancer-associa 56.9 1.8E+02 0.0039 31.0 12.1 59 171-229 453-526 (527)
129 PF08317 Spc7: Spc7 kinetochor 56.3 2.1E+02 0.0045 28.2 12.6 92 125-225 193-288 (325)
130 PF11544 Spc42p: Spindle pole 55.9 1.1E+02 0.0023 24.8 8.2 35 168-202 9-43 (76)
131 PF09755 DUF2046: Uncharacteri 55.5 2.3E+02 0.005 28.5 15.2 103 125-227 29-149 (310)
132 cd00179 SynN Syntaxin N-termin 55.2 1.3E+02 0.0028 25.5 11.9 81 142-226 14-101 (151)
133 KOG3564 GTPase-activating prot 54.9 1.2E+02 0.0025 32.5 10.4 77 135-225 27-103 (604)
134 PRK10884 SH3 domain-containing 54.7 1.9E+02 0.0041 27.1 12.3 28 176-203 137-164 (206)
135 PF10168 Nup88: Nuclear pore c 54.5 1.7E+02 0.0037 32.4 12.2 111 124-235 570-703 (717)
136 PF07888 CALCOCO1: Calcium bin 54.5 3.1E+02 0.0068 29.6 16.7 13 11-23 28-40 (546)
137 PF07716 bZIP_2: Basic region 54.5 81 0.0018 22.9 8.0 28 173-200 27-54 (54)
138 PRK00888 ftsB cell division pr 53.9 45 0.00098 27.9 6.1 34 171-204 34-67 (105)
139 PRK06975 bifunctional uroporph 53.6 1.3E+02 0.0027 32.8 11.0 77 127-205 343-419 (656)
140 PF14193 DUF4315: Domain of un 53.6 24 0.00051 28.7 4.2 30 172-201 2-31 (83)
141 PRK04863 mukB cell division pr 53.5 3.4E+02 0.0074 32.8 15.1 31 174-204 365-395 (1486)
142 PF14775 NYD-SP28_assoc: Sperm 53.0 72 0.0016 24.3 6.6 49 139-196 10-58 (60)
143 PRK04863 mukB cell division pr 52.8 4.5E+02 0.0097 31.8 15.9 56 170-225 347-402 (1486)
144 KOG4421 Uncharacterized conser 52.8 1.5E+02 0.0032 31.0 10.5 51 137-188 126-176 (637)
145 PLN02189 cellulose synthase 52.8 9.2 0.0002 43.6 2.3 44 287-330 33-87 (1040)
146 KOG3119 Basic region leucine z 52.7 78 0.0017 30.7 8.4 18 190-207 220-237 (269)
147 PRK11448 hsdR type I restricti 52.5 69 0.0015 37.2 9.2 22 182-203 188-209 (1123)
148 PF12999 PRKCSH-like: Glucosid 52.3 72 0.0016 29.5 7.6 10 60-69 48-57 (176)
149 TIGR01069 mutS2 MutS2 family p 52.2 3.5E+02 0.0076 30.2 14.3 12 129-140 507-518 (771)
150 PRK00409 recombination and DNA 52.0 2.5E+02 0.0053 31.4 13.1 13 128-140 511-523 (782)
151 PF05278 PEARLI-4: Arabidopsis 51.5 1.9E+02 0.0042 28.4 10.8 32 169-207 198-229 (269)
152 PF11221 Med21: Subunit 21 of 51.3 1.2E+02 0.0026 26.5 8.7 19 122-140 72-90 (144)
153 PF15070 GOLGA2L5: Putative go 51.2 3.6E+02 0.0079 29.4 15.7 17 132-148 110-126 (617)
154 PF05565 Sipho_Gp157: Siphovir 51.1 93 0.002 27.7 8.1 52 178-229 40-91 (162)
155 PF00170 bZIP_1: bZIP transcri 50.3 1E+02 0.0023 22.9 8.3 18 190-207 31-48 (64)
156 PF04156 IncA: IncA protein; 50.2 1.8E+02 0.004 25.8 15.1 53 175-227 127-179 (191)
157 KOG0717 Molecular chaperone (D 49.9 2.7E+02 0.0059 29.7 12.2 12 289-300 293-304 (508)
158 TIGR01069 mutS2 MutS2 family p 49.9 2E+02 0.0044 32.0 12.0 12 126-137 518-529 (771)
159 PF05266 DUF724: Protein of un 49.9 2.1E+02 0.0046 26.4 12.2 49 173-228 126-174 (190)
160 PRK15422 septal ring assembly 49.2 1.1E+02 0.0024 24.9 7.3 31 178-208 39-69 (79)
161 KOG1029 Endocytic adaptor prot 49.1 2.1E+02 0.0046 32.5 11.6 70 131-201 343-415 (1118)
162 COG5175 MOT2 Transcriptional r 49.0 7.1 0.00015 39.6 0.7 41 290-331 16-65 (480)
163 PF10083 DUF2321: Uncharacteri 49.0 6.3 0.00014 35.7 0.3 26 310-335 29-55 (158)
164 COG2959 HemX Uncharacterized e 48.4 2.4E+02 0.0051 29.2 11.2 82 120-205 46-132 (391)
165 cd00729 rubredoxin_SM Rubredox 47.8 6.1 0.00013 26.7 0.0 16 319-334 18-33 (34)
166 KOG2660 Locus-specific chromos 47.8 3.8 8.3E-05 41.0 -1.4 46 287-333 14-64 (331)
167 PF15070 GOLGA2L5: Putative go 47.6 1.5E+02 0.0033 32.3 10.4 37 172-208 102-138 (617)
168 PF05983 Med7: MED7 protein; 47.4 1.2E+02 0.0025 27.4 8.1 47 145-194 115-161 (162)
169 PRK05097 Ter macrodomain organ 47.3 21 0.00046 31.9 3.3 75 126-227 45-124 (150)
170 PRK00106 hypothetical protein; 47.2 4E+02 0.0086 28.7 14.9 10 297-306 263-272 (535)
171 KOG4657 Uncharacterized conser 46.9 2.8E+02 0.0061 26.9 15.3 88 118-207 14-101 (246)
172 COG3120 Uncharacterized protei 46.7 1.1E+02 0.0023 27.3 7.4 35 195-229 92-126 (149)
173 KOG1029 Endocytic adaptor prot 46.7 2E+02 0.0044 32.6 11.0 8 55-62 271-278 (1118)
174 PF06005 DUF904: Protein of un 46.3 1.5E+02 0.0032 23.4 9.1 23 185-207 39-61 (72)
175 PF02403 Seryl_tRNA_N: Seryl-t 46.2 1.6E+02 0.0035 23.9 9.4 38 133-175 26-65 (108)
176 KOG4445 Uncharacterized conser 46.0 4.8 0.0001 40.2 -1.0 42 288-330 115-186 (368)
177 PF09731 Mitofilin: Mitochondr 45.1 4E+02 0.0086 28.1 14.2 16 165-180 342-357 (582)
178 PRK11637 AmiB activator; Provi 44.9 3.5E+02 0.0076 27.5 12.2 28 172-199 97-124 (428)
179 KOG1734 Predicted RING-contain 44.5 13 0.00029 36.7 1.7 46 285-331 221-282 (328)
180 PF06657 Cep57_MT_bd: Centroso 44.4 1.6E+02 0.0035 23.5 7.6 29 114-142 5-33 (79)
181 PF13747 DUF4164: Domain of un 44.3 1.7E+02 0.0038 23.8 10.9 34 174-207 35-68 (89)
182 PRK05431 seryl-tRNA synthetase 44.3 1.8E+02 0.0039 29.9 10.0 78 134-231 26-105 (425)
183 COG4306 Uncharacterized protei 44.2 8.8 0.00019 34.0 0.4 25 311-335 30-55 (160)
184 PF04977 DivIC: Septum formati 44.2 73 0.0016 24.0 5.5 32 173-204 19-50 (80)
185 PF12761 End3: Actin cytoskele 44.1 47 0.001 31.2 5.2 46 179-227 97-142 (195)
186 TIGR00414 serS seryl-tRNA synt 43.7 1.2E+02 0.0027 31.1 8.6 18 214-231 91-108 (418)
187 PF08172 CASP_C: CASP C termin 43.6 71 0.0015 30.8 6.5 25 177-201 99-123 (248)
188 PF14916 CCDC92: Coiled-coil d 43.3 67 0.0014 24.8 5.0 28 164-191 14-41 (60)
189 TIGR00237 xseA exodeoxyribonuc 42.8 4E+02 0.0086 27.5 14.0 28 156-183 307-334 (432)
190 PRK03564 formate dehydrogenase 42.1 17 0.00036 36.2 2.1 40 288-328 187-235 (309)
191 PF08702 Fib_alpha: Fibrinogen 42.0 2.5E+02 0.0054 24.9 11.1 51 121-175 20-72 (146)
192 KOG0971 Microtubule-associated 41.6 3.5E+02 0.0075 31.4 11.9 63 143-209 980-1050(1243)
193 KOG1941 Acetylcholine receptor 40.9 1.7E+02 0.0038 30.6 9.0 51 125-176 252-304 (518)
194 PF12325 TMF_TATA_bd: TATA ele 40.6 2.4E+02 0.0052 24.3 13.9 96 118-227 15-110 (120)
195 PF14738 PaaSYMP: Solute carri 40.4 2.1E+02 0.0046 25.7 8.6 54 132-185 93-146 (154)
196 PF15397 DUF4618: Domain of un 40.2 3.7E+02 0.008 26.3 11.6 86 143-230 37-137 (258)
197 COG3074 Uncharacterized protei 39.7 2E+02 0.0043 23.1 9.0 29 181-209 42-70 (79)
198 PRK13182 racA polar chromosome 39.6 2.1E+02 0.0044 26.2 8.6 29 178-206 92-120 (175)
199 PF05529 Bap31: B-cell recepto 39.4 2.9E+02 0.0062 24.9 10.3 7 216-222 178-184 (192)
200 PF10186 Atg14: UV radiation r 39.2 3.2E+02 0.007 25.4 17.1 12 129-140 37-48 (302)
201 KOG3390 General control of ami 39.1 2.5E+02 0.0055 24.1 11.2 56 145-207 14-80 (120)
202 PRK02224 chromosome segregatio 38.8 5.8E+02 0.012 28.2 16.1 45 173-217 525-569 (880)
203 KOG0493 Transcription factor E 38.6 1.4E+02 0.0031 29.6 7.7 34 149-182 270-303 (342)
204 COG5481 Uncharacterized conser 38.3 1.7E+02 0.0037 22.8 6.5 48 146-198 9-58 (67)
205 cd00350 rubredoxin_like Rubred 38.0 9.7 0.00021 25.3 -0.2 16 319-334 17-32 (33)
206 PF14235 DUF4337: Domain of un 37.8 3E+02 0.0066 24.7 10.4 75 128-203 31-105 (157)
207 TIGR02894 DNA_bind_RsfA transc 37.7 2.5E+02 0.0055 25.7 8.7 33 122-154 83-117 (161)
208 KOG4466 Component of histone d 37.3 4.3E+02 0.0094 26.3 10.9 18 186-203 117-134 (291)
209 cd07665 BAR_SNX1 The Bin/Amphi 37.1 3.8E+02 0.0083 25.6 13.9 84 124-210 81-177 (234)
210 PF08654 DASH_Dad2: DASH compl 36.8 1.7E+02 0.0037 24.6 7.0 50 170-219 3-52 (103)
211 PF07956 DUF1690: Protein of U 36.8 2.5E+02 0.0054 24.9 8.4 45 117-165 7-59 (142)
212 PRK14140 heat shock protein Gr 36.7 1.1E+02 0.0024 28.5 6.4 27 132-159 36-62 (191)
213 PHA03415 putative internal vir 36.7 1.6E+02 0.0035 33.4 8.5 86 122-207 299-397 (1019)
214 KOG0980 Actin-binding protein 36.7 3.1E+02 0.0066 31.5 10.6 37 190-226 363-399 (980)
215 PF05883 Baculo_RING: Baculovi 36.4 12 0.00026 33.1 0.1 32 288-319 26-65 (134)
216 PF05278 PEARLI-4: Arabidopsis 36.3 4.3E+02 0.0094 26.0 11.8 33 170-202 213-245 (269)
217 PF10217 DUF2039: Uncharacteri 36.3 9.9 0.00022 31.6 -0.4 41 284-329 51-91 (92)
218 KOG3161 Predicted E3 ubiquitin 36.1 11 0.00023 41.3 -0.4 40 288-329 11-56 (861)
219 smart00806 AIP3 Actin interact 36.0 36 0.00077 35.5 3.4 32 162-195 373-404 (426)
220 KOG4398 Predicted coiled-coil 35.8 4.7E+02 0.01 26.3 11.0 59 134-200 9-69 (359)
221 KOG0976 Rho/Rac1-interacting s 35.6 6.8E+02 0.015 28.9 12.9 50 176-225 377-426 (1265)
222 PF04859 DUF641: Plant protein 35.2 1.4E+02 0.0031 26.2 6.5 25 171-195 101-125 (131)
223 PF06303 MatP: Organiser of ma 35.0 47 0.001 29.9 3.5 74 127-227 46-124 (148)
224 PF04111 APG6: Autophagy prote 34.9 4.6E+02 0.01 25.9 12.7 68 163-230 56-130 (314)
225 PRK13729 conjugal transfer pil 34.8 1.3E+02 0.0029 31.8 7.3 32 176-207 88-119 (475)
226 PRK05892 nucleoside diphosphat 34.6 1.6E+02 0.0035 26.3 7.0 11 144-154 14-24 (158)
227 PHA02562 46 endonuclease subun 34.4 5.4E+02 0.012 26.6 13.9 29 171-199 358-386 (562)
228 TIGR01461 greB transcription e 34.4 1.1E+02 0.0024 27.2 5.9 21 178-198 45-65 (156)
229 COG5219 Uncharacterized conser 34.2 16 0.00034 41.8 0.5 44 287-331 1468-1524(1525)
230 PRK01885 greB transcription el 34.0 1.2E+02 0.0026 27.0 6.1 9 145-153 14-22 (157)
231 PF12128 DUF3584: Protein of u 33.9 8.3E+02 0.018 28.6 16.0 30 176-205 676-705 (1201)
232 PRK09039 hypothetical protein; 33.9 5E+02 0.011 26.0 12.4 28 173-200 153-180 (343)
233 PRK14714 DNA polymerase II lar 33.7 30 0.00065 40.5 2.6 47 288-335 667-725 (1337)
234 PRK11020 hypothetical protein; 33.5 2.7E+02 0.0058 24.3 7.7 50 163-212 23-73 (118)
235 KOG3113 Uncharacterized conser 33.2 34 0.00074 33.6 2.6 49 287-336 110-164 (293)
236 PF10481 CENP-F_N: Cenp-F N-te 33.0 5.1E+02 0.011 25.9 12.0 86 141-228 25-110 (307)
237 KOG4739 Uncharacterized protei 33.0 2.5E+02 0.0055 27.1 8.3 15 118-132 68-82 (233)
238 PRK13922 rod shape-determining 32.7 3.9E+02 0.0084 25.3 9.7 34 180-213 71-104 (276)
239 KOG4191 Histone acetyltransfer 32.6 6.4E+02 0.014 26.9 11.9 99 121-226 403-502 (516)
240 KOG2129 Uncharacterized conser 32.5 3.9E+02 0.0084 28.3 10.0 31 138-168 257-287 (552)
241 COG4717 Uncharacterized conser 32.4 4.9E+02 0.011 30.0 11.4 52 171-228 209-260 (984)
242 KOG1962 B-cell receptor-associ 32.2 3.4E+02 0.0073 25.9 8.9 34 169-202 163-196 (216)
243 PRK00286 xseA exodeoxyribonucl 32.2 4.1E+02 0.0089 27.0 10.3 99 124-223 280-389 (438)
244 PF08738 Gon7: Gon7 family; I 32.2 2.1E+02 0.0046 24.2 6.9 26 118-144 54-79 (103)
245 PLN02678 seryl-tRNA synthetase 32.1 2.9E+02 0.0062 29.0 9.2 21 212-232 91-111 (448)
246 PF15290 Syntaphilin: Golgi-lo 31.7 5.2E+02 0.011 25.9 10.3 26 173-198 140-169 (305)
247 COG1592 Rubrerythrin [Energy p 31.4 14 0.0003 33.7 -0.4 31 288-334 134-164 (166)
248 COG4357 Zinc finger domain con 31.4 27 0.00059 29.5 1.4 44 290-333 37-94 (105)
249 TIGR03752 conj_TIGR03752 integ 31.3 3E+02 0.0065 29.2 9.2 14 140-153 65-78 (472)
250 PF09730 BicD: Microtubule-ass 31.2 7.9E+02 0.017 27.5 14.9 57 126-182 48-125 (717)
251 KOG1940 Zn-finger protein [Gen 31.2 10 0.00022 37.2 -1.3 42 291-334 161-210 (276)
252 PRK10698 phage shock protein P 31.2 4.5E+02 0.0097 24.7 10.8 81 122-203 102-184 (222)
253 PF10234 Cluap1: Clusterin-ass 31.1 3.3E+02 0.0072 26.7 8.9 57 133-191 161-217 (267)
254 PLN02436 cellulose synthase A 30.9 34 0.00073 39.5 2.4 44 287-330 35-89 (1094)
255 PF07795 DUF1635: Protein of u 30.9 3.3E+02 0.0072 26.0 8.6 48 150-204 3-52 (214)
256 KOG3976 Mitochondrial F1F0-ATP 30.9 5.1E+02 0.011 25.3 12.3 101 127-229 111-218 (247)
257 KOG2483 Upstream transcription 30.8 1.5E+02 0.0032 28.5 6.4 32 170-201 111-142 (232)
258 COG2433 Uncharacterized conser 30.7 7.7E+02 0.017 27.3 12.2 16 171-186 488-503 (652)
259 PF06818 Fez1: Fez1; InterPro 30.6 2.9E+02 0.0064 26.1 8.2 61 134-195 132-201 (202)
260 PF04977 DivIC: Septum formati 30.4 1.5E+02 0.0033 22.2 5.4 39 171-209 24-62 (80)
261 PF07227 DUF1423: Protein of u 30.3 1.9E+02 0.0041 30.4 7.5 20 189-208 354-373 (446)
262 KOG3859 Septins (P-loop GTPase 30.1 6.1E+02 0.013 25.9 12.3 81 146-226 320-404 (406)
263 COG4026 Uncharacterized protei 30.0 5.3E+02 0.012 25.2 12.4 49 171-226 156-204 (290)
264 PF13240 zinc_ribbon_2: zinc-r 30.0 20 0.00044 22.2 0.3 18 312-329 2-23 (23)
265 PF14569 zf-UDP: Zinc-binding 30.0 29 0.00062 28.2 1.2 43 288-330 9-62 (80)
266 PRK04023 DNA polymerase II lar 29.9 41 0.00089 38.7 2.8 48 287-335 625-679 (1121)
267 COG2919 Septum formation initi 29.6 3.5E+02 0.0075 22.9 8.4 26 175-200 61-86 (117)
268 PRK14127 cell division protein 29.6 1.2E+02 0.0027 25.8 5.1 10 132-141 25-34 (109)
269 PRK13677 hypothetical protein; 29.5 2.2E+02 0.0047 25.0 6.6 53 124-182 72-124 (125)
270 PRK00286 xseA exodeoxyribonucl 29.3 6.2E+02 0.014 25.7 15.6 11 129-139 263-273 (438)
271 PF11740 KfrA_N: Plasmid repli 29.1 3.2E+02 0.0069 22.3 9.9 10 190-199 107-116 (120)
272 TIGR01005 eps_transp_fam exopo 29.1 7.8E+02 0.017 26.8 14.2 31 198-228 375-405 (754)
273 PF10764 Gin: Inhibitor of sig 29.0 31 0.00066 25.0 1.1 28 290-319 1-28 (46)
274 PF12999 PRKCSH-like: Glucosid 29.0 3E+02 0.0064 25.5 7.8 13 139-151 130-142 (176)
275 PHA01750 hypothetical protein 29.0 2.3E+02 0.005 22.5 6.0 23 134-156 35-57 (75)
276 KOG4217 Nuclear receptors of t 28.5 15 0.00032 38.9 -0.8 27 286-318 267-295 (605)
277 KOG4218 Nuclear hormone recept 28.5 25 0.00054 36.0 0.8 13 289-301 16-28 (475)
278 KOG0608 Warts/lats-like serine 28.4 2.1E+02 0.0046 32.2 7.6 47 121-167 570-616 (1034)
279 TIGR01010 BexC_CtrB_KpsE polys 28.3 5.8E+02 0.013 25.1 12.1 18 137-154 173-190 (362)
280 TIGR02231 conserved hypothetic 28.3 7E+02 0.015 26.0 11.4 15 124-138 76-90 (525)
281 PF03961 DUF342: Protein of un 28.2 4E+02 0.0086 27.4 9.5 19 178-196 375-393 (451)
282 PF14257 DUF4349: Domain of un 28.2 1.8E+02 0.0039 27.4 6.6 24 171-194 169-192 (262)
283 PF14282 FlxA: FlxA-like prote 28.0 3.1E+02 0.0067 22.8 7.2 54 177-230 18-75 (106)
284 PF06005 DUF904: Protein of un 27.9 3E+02 0.0066 21.6 9.9 35 171-205 18-52 (72)
285 PF06818 Fez1: Fez1; InterPro 27.7 4.9E+02 0.011 24.6 9.1 48 171-225 59-106 (202)
286 COG1579 Zn-ribbon protein, pos 27.7 5.7E+02 0.012 24.7 12.6 34 287-327 196-229 (239)
287 KOG2169 Zn-finger transcriptio 27.6 37 0.0008 36.8 2.0 41 285-330 303-356 (636)
288 cd00730 rubredoxin Rubredoxin; 27.5 25 0.00053 25.9 0.4 12 286-297 32-43 (50)
289 PF12180 EABR: TSG101 and ALIX 27.5 2.2E+02 0.0047 19.8 5.7 33 192-224 2-34 (35)
290 PF08549 SWI-SNF_Ssr4: Fungal 27.3 1.1E+02 0.0024 33.7 5.4 59 134-195 364-429 (669)
291 COG5019 CDC3 Septin family pro 27.3 4E+02 0.0087 27.5 9.1 29 163-191 334-362 (373)
292 PRK09413 IS2 repressor TnpA; R 27.3 1.5E+02 0.0032 24.9 5.2 26 186-211 79-104 (121)
293 COG2960 Uncharacterized protei 27.2 3.9E+02 0.0085 22.8 9.3 23 144-166 32-54 (103)
294 KOG0982 Centrosomal protein Nu 27.0 7.9E+02 0.017 26.2 12.5 32 170-208 289-320 (502)
295 PF08926 DUF1908: Domain of un 27.0 2.7E+02 0.0059 27.6 7.5 42 116-157 152-207 (282)
296 KOG1428 Inhibitor of type V ad 26.7 27 0.00058 41.9 0.7 46 287-333 3485-3547(3738)
297 PF15254 CCDC14: Coiled-coil d 26.6 1E+03 0.022 27.2 12.9 48 165-212 435-482 (861)
298 PF09730 BicD: Microtubule-ass 26.6 9.5E+02 0.021 27.0 12.8 84 142-225 367-452 (717)
299 KOG1150 Predicted molecular ch 26.5 5.9E+02 0.013 24.5 9.4 44 136-186 156-199 (250)
300 KOG1853 LIS1-interacting prote 26.5 6.5E+02 0.014 25.0 14.4 11 142-152 67-77 (333)
301 PF04380 BMFP: Membrane fusoge 26.5 2.3E+02 0.005 22.4 5.9 57 128-192 22-78 (79)
302 PF12718 Tropomyosin_1: Tropom 26.4 4.4E+02 0.0096 23.1 11.5 78 143-225 2-85 (143)
303 PF07975 C1_4: TFIIH C1-like d 26.3 44 0.00095 24.9 1.6 16 311-326 31-50 (51)
304 PF10571 UPF0547: Uncharacteri 26.2 38 0.00081 21.7 1.1 18 312-329 3-24 (26)
305 PF08202 MIS13: Mis12-Mtw1 pro 26.0 80 0.0017 31.0 3.8 24 185-208 164-187 (301)
306 PRK13729 conjugal transfer pil 26.0 2.9E+02 0.0064 29.3 8.0 18 165-182 98-115 (475)
307 PHA02825 LAP/PHD finger-like p 25.9 45 0.00098 30.4 1.9 43 287-330 7-59 (162)
308 PHA02562 46 endonuclease subun 25.8 7.5E+02 0.016 25.5 15.2 43 163-205 205-247 (562)
309 PF12329 TMF_DNA_bd: TATA elem 25.8 3.3E+02 0.0071 21.4 10.1 41 167-210 32-72 (74)
310 PRK10803 tol-pal system protei 25.8 1.3E+02 0.0028 28.9 5.1 36 123-159 58-93 (263)
311 PF13300 DUF4078: Domain of un 25.7 3.7E+02 0.008 22.1 7.0 9 189-197 76-84 (88)
312 KOG0804 Cytoplasmic Zn-finger 25.5 8.4E+02 0.018 26.0 14.7 44 187-230 409-452 (493)
313 TIGR01462 greA transcription e 25.5 1.6E+02 0.0034 25.8 5.3 11 144-154 8-18 (151)
314 PF07464 ApoLp-III: Apolipopho 25.4 4E+02 0.0086 24.0 7.8 41 181-221 77-118 (155)
315 PF03194 LUC7: LUC7 N_terminus 25.4 5.4E+02 0.012 24.7 9.3 91 120-227 80-170 (254)
316 PF09766 FimP: Fms-interacting 25.3 1.9E+02 0.0041 29.1 6.4 42 183-225 93-134 (355)
317 KOG4661 Hsp27-ERE-TATA-binding 25.3 3.2E+02 0.007 30.1 8.2 27 148-175 627-653 (940)
318 KOG4421 Uncharacterized conser 25.2 3.9E+02 0.0084 28.0 8.5 68 132-199 537-612 (637)
319 PF06785 UPF0242: Uncharacteri 25.0 7.8E+02 0.017 25.4 11.2 12 173-184 168-179 (401)
320 PF02403 Seryl_tRNA_N: Seryl-t 24.9 3.7E+02 0.0081 21.7 10.3 86 138-226 6-101 (108)
321 KOG0982 Centrosomal protein Nu 24.9 8.3E+02 0.018 26.0 10.8 28 170-197 402-429 (502)
322 PLN03184 chloroplast Hsp70; Pr 24.8 9.4E+02 0.02 26.3 14.0 25 144-169 558-582 (673)
323 TIGR03185 DNA_S_dndD DNA sulfu 24.8 9E+02 0.019 26.1 14.4 26 176-201 447-472 (650)
324 PF00769 ERM: Ezrin/radixin/mo 24.6 6.2E+02 0.013 24.1 13.0 101 121-229 31-133 (246)
325 PF08549 SWI-SNF_Ssr4: Fungal 24.6 2E+02 0.0044 31.7 6.7 30 168-197 368-397 (669)
326 COG3937 Uncharacterized conser 24.4 2.1E+02 0.0046 24.5 5.5 43 150-199 62-104 (108)
327 PRK14139 heat shock protein Gr 24.3 1.4E+02 0.0029 27.8 4.7 27 132-159 31-57 (185)
328 PF00170 bZIP_1: bZIP transcri 24.2 3E+02 0.0065 20.4 8.7 27 174-200 29-55 (64)
329 PF13874 Nup54: Nucleoporin co 24.2 4.7E+02 0.01 22.6 9.1 91 122-229 33-123 (141)
330 PF02601 Exonuc_VII_L: Exonucl 24.2 6.5E+02 0.014 24.3 14.3 32 123-154 147-178 (319)
331 PF08614 ATG16: Autophagy prot 23.9 5.5E+02 0.012 23.3 9.2 20 183-202 156-175 (194)
332 KOG2068 MOT2 transcription fac 23.9 51 0.0011 33.2 2.0 45 288-333 249-301 (327)
333 PF14265 DUF4355: Domain of un 23.7 4.3E+02 0.0093 22.0 9.5 19 133-151 11-29 (125)
334 PF13600 DUF4140: N-terminal d 23.7 1.6E+02 0.0036 23.7 4.7 30 175-204 74-103 (104)
335 PF10186 Atg14: UV radiation r 23.6 6E+02 0.013 23.6 16.5 14 124-137 18-31 (302)
336 PF03449 GreA_GreB_N: Transcri 23.6 2E+02 0.0043 22.6 4.9 26 129-154 12-37 (74)
337 PRK01343 zinc-binding protein; 23.6 40 0.00086 25.8 0.9 11 320-330 10-20 (57)
338 PRK06278 cobyrinic acid a,c-di 23.5 88 0.0019 32.9 3.8 30 168-197 194-223 (476)
339 KOG1854 Mitochondrial inner me 23.5 1E+03 0.023 26.4 13.6 28 122-149 328-355 (657)
340 PF03962 Mnd1: Mnd1 family; I 23.2 5.8E+02 0.013 23.4 11.5 46 178-226 103-148 (188)
341 PF08112 ATP-synt_E_2: ATP syn 23.1 3.4E+02 0.0074 20.6 6.9 46 133-186 7-52 (56)
342 TIGR02169 SMC_prok_A chromosom 23.0 1.1E+03 0.024 26.5 15.7 53 173-225 870-922 (1164)
343 PF11981 DUF3482: Domain of un 23.0 7.2E+02 0.016 24.5 9.8 73 124-202 32-105 (292)
344 KOG0742 AAA+-type ATPase [Post 22.8 9.8E+02 0.021 25.8 14.2 15 177-191 165-179 (630)
345 TIGR02209 ftsL_broad cell divi 22.8 2.2E+02 0.0047 22.0 5.1 36 171-206 24-59 (85)
346 PF12128 DUF3584: Protein of u 22.8 1.3E+03 0.028 27.1 16.6 28 172-199 470-497 (1201)
347 PF07439 DUF1515: Protein of u 22.8 4.6E+02 0.01 22.6 7.2 52 135-198 2-53 (112)
348 PF04340 DUF484: Protein of un 22.7 3.1E+02 0.0068 25.3 6.9 16 161-177 41-56 (225)
349 PF05335 DUF745: Protein of un 22.7 6.2E+02 0.014 23.5 13.5 82 122-205 66-171 (188)
350 PF13166 AAA_13: AAA domain 22.5 9.7E+02 0.021 25.7 15.6 54 172-225 418-471 (712)
351 PRK14148 heat shock protein Gr 22.4 2.2E+02 0.0048 26.6 5.8 27 132-159 39-65 (195)
352 PF12325 TMF_TATA_bd: TATA ele 22.2 5.1E+02 0.011 22.3 9.6 42 141-191 68-109 (120)
353 PF10752 DUF2533: Protein of u 22.1 3.8E+02 0.0082 22.1 6.3 25 120-144 3-27 (84)
354 PF04423 Rad50_zn_hook: Rad50 22.0 30 0.00064 25.2 -0.0 10 321-330 22-31 (54)
355 COG5222 Uncharacterized conser 21.9 40 0.00086 34.0 0.8 38 289-327 275-318 (427)
356 PHA02107 hypothetical protein 21.9 2E+02 0.0043 26.7 5.2 34 164-197 177-210 (216)
357 PF11500 Cut12: Spindle pole b 21.8 6E+02 0.013 23.0 8.9 26 174-199 101-126 (152)
358 PRK14157 heat shock protein Gr 21.8 2.5E+02 0.0055 26.9 6.2 41 175-215 81-121 (227)
359 PF10211 Ax_dynein_light: Axon 21.6 6.3E+02 0.014 23.1 13.0 25 183-207 125-149 (189)
360 KOG0837 Transcriptional activa 21.6 6.8E+02 0.015 24.8 9.0 36 189-231 231-266 (279)
361 PF06936 Selenoprotein_S: Sele 21.4 4.6E+02 0.0099 24.4 7.6 18 148-165 83-100 (190)
362 KOG0742 AAA+-type ATPase [Post 21.4 1E+03 0.023 25.6 11.6 38 154-191 171-210 (630)
363 KOG0687 26S proteasome regulat 21.3 2.3E+02 0.005 29.1 6.0 55 163-225 74-134 (393)
364 KOG0243 Kinesin-like protein [ 21.3 1.4E+03 0.03 26.9 13.5 90 139-228 409-512 (1041)
365 KOG0006 E3 ubiquitin-protein l 21.3 52 0.0011 33.4 1.5 31 287-318 220-252 (446)
366 KOG0898 40S ribosomal protein 21.1 1.3E+02 0.0028 27.1 3.7 42 132-173 26-67 (152)
367 PRK14155 heat shock protein Gr 21.0 2.7E+02 0.0058 26.3 6.1 18 142-159 21-38 (208)
368 PF05911 DUF869: Plant protein 21.0 1.2E+03 0.027 26.3 12.8 34 190-223 125-158 (769)
369 KOG0240 Kinesin (SMY1 subfamil 21.0 1.1E+03 0.024 25.8 13.9 82 125-207 423-506 (607)
370 PF06273 eIF-4B: Plant specifi 21.0 1E+02 0.0022 32.8 3.5 27 167-196 399-425 (492)
371 PF14712 Snapin_Pallidin: Snap 20.9 4.2E+02 0.0091 20.8 10.4 55 141-197 35-90 (92)
372 KOG0579 Ste20-like serine/thre 20.9 1.3E+03 0.028 26.5 12.2 40 148-187 811-850 (1187)
373 PF06906 DUF1272: Protein of u 20.9 53 0.0012 25.1 1.1 20 311-330 31-52 (57)
374 PF12126 DUF3583: Protein of u 20.8 8.8E+02 0.019 24.5 11.5 78 125-202 5-92 (324)
375 PF12709 Kinetocho_Slk19: Cent 20.8 4.9E+02 0.011 21.5 11.9 77 126-202 4-80 (87)
376 PF08599 Nbs1_C: DNA damage re 20.8 1.2E+02 0.0026 23.8 3.0 23 182-205 30-52 (65)
377 PF13094 CENP-Q: CENP-Q, a CEN 20.8 5.7E+02 0.012 22.3 8.8 37 171-207 41-77 (160)
378 PF04375 HemX: HemX; InterPro 20.7 8.7E+02 0.019 24.4 10.5 34 166-199 88-121 (372)
379 TIGR02168 SMC_prok_B chromosom 20.4 1.2E+03 0.026 26.0 16.6 14 22-35 27-41 (1179)
380 PF06248 Zw10: Centromere/kine 20.2 1.1E+03 0.023 25.2 12.0 76 144-219 24-103 (593)
381 PF11944 DUF3461: Protein of u 20.1 3.4E+02 0.0074 23.9 6.0 54 123-182 71-124 (125)
382 PRK08032 fliD flagellar cappin 20.0 4.4E+02 0.0096 27.4 8.0 38 176-215 411-448 (462)
383 PHA02571 a-gt.4 hypothetical p 20.0 4.9E+02 0.011 22.4 6.8 45 135-186 8-52 (109)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-39 Score=297.02 Aligned_cols=193 Identities=48% Similarity=0.856 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 123 DMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 123 ~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
++++++++|..|||+|+..|.|+||..+.+.++++++.++.++|..+.++||+|++||++++++|++|+++++++.+|+|
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHhhHHHHHHHHhHhhhhcCCCCCcccCccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCC
Q 019604 203 IWRDLAQSNEATANALRTNLEQVLASAAAQVKEGRAPAPAALGLEEEVVDDAESCCGSSWEDNGNKKINNCDHKDGDNGS 282 (338)
Q Consensus 203 ~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~~~~~~~~~~g~~~~~~l~~~e~dDAeScc~~~~~~~~~~~~er~~~~~~~~e~ 282 (338)
.|+++|++||+++++|+.+|+|++++.. . . . ...|++.++|+....+++... ... .+.+
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~-~------~-----~---~~~~~~~~~~g~~~~~~~~s~---~~~--~~~~- 153 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCP-A------S-----A---PAEERGQKSCGDREADDGKSS---YVD--PSVD- 153 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcc-c------c-----c---CchhhhccccCcccccccccc---ccc--hhhh-
Confidence 9999999999999999999999998851 0 0 0 234566666655554432211 000 0000
Q ss_pred CCCCcccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEEEee
Q 019604 283 SHSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNM 337 (338)
Q Consensus 283 ~~~~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~V~l 337 (338)
.......|+.|..+++.|+|+||+|+|+|..|...+..||+|+.+++++++||+
T Consensus 154 -~~~~~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 154 -NFKRMRSCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred -hhhccccceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 111222399999999999999999999999999989999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.3e-13 Score=131.44 Aligned_cols=52 Identities=37% Similarity=0.938 Sum_probs=47.9
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceEEEee
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVHVNM 337 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~V~l 337 (338)
.+...|+||++..+++++|||||+|+|..|++.+ ..|||||++|...+.|++
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 4468999999999999999999999999999997 569999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.05 E-value=6.2e-11 Score=85.56 Aligned_cols=43 Identities=40% Similarity=1.037 Sum_probs=38.8
Q ss_pred cccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 289 ~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
..|.||+++..+++++||||+++|..|...+ ..||+||++|++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4799999999999999999999999999997 899999999875
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.4e-11 Score=92.09 Aligned_cols=50 Identities=30% Similarity=0.800 Sum_probs=46.1
Q ss_pred cccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCceEEEeeC
Q 019604 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 289 ~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~~V~V~lS 338 (338)
..|.||++++.+.||..|||+|+|.+|.-.+ ..||+||++|...|+.|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5799999999999999999999999999875 5899999999999988765
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.8e-11 Score=113.01 Aligned_cols=51 Identities=29% Similarity=0.733 Sum_probs=49.0
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEEEeeC
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~V~lS 338 (338)
...|.||++.+++.+||||||++.|..|.+.|..|||||+.|...++||-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 789999999999999999999999999999999999999999999999854
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=8.8e-10 Score=108.54 Aligned_cols=53 Identities=32% Similarity=0.781 Sum_probs=49.4
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEEEeeC
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~V~lS 338 (338)
.....|+||.+.+.+++|+||||+|+|..|...+..||+||..|...+++|.|
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 34568999999999999999999999999999999999999999999998865
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4e-05 Score=81.89 Aligned_cols=45 Identities=20% Similarity=0.545 Sum_probs=40.6
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
+....|.+|.+++.++|+.-|+|+ ||..|.... ++||.|..+|..
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 446789999999999999999999 999999873 899999998864
No 8
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.89 E-value=3.2e-06 Score=84.91 Aligned_cols=52 Identities=33% Similarity=0.702 Sum_probs=45.4
Q ss_pred CCCcccccccccccCcceEEeCCCCcccchhHHhcC------CCCCCCCCCCCceEEEe
Q 019604 284 HSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL------HTCPVCKSPKTVSVHVN 336 (338)
Q Consensus 284 ~~~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l------~~CPvCR~~i~~~V~V~ 336 (338)
++.....|+||-++.++|-+-||||+ +|..|-..+ ..||.||..|.+.-.|.
T Consensus 365 MgsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 365 MGSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred ccchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 34556799999999999999999999 999998775 69999999999876654
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.68 E-value=3.5e-05 Score=71.05 Aligned_cols=43 Identities=30% Similarity=0.599 Sum_probs=37.6
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhcC--------------------CCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL--------------------HTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l--------------------~~CPvCR~~i~~ 331 (338)
...|.||++...+.++.||+|+ +|..|...+ ..||+||.++..
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4679999999999999999998 999998542 479999999865
No 10
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.68 E-value=2.4e-05 Score=55.18 Aligned_cols=36 Identities=31% Similarity=0.862 Sum_probs=31.3
Q ss_pred cccccccC---cceEEeCCCCcccchhHHhcCC----CCCCCCC
Q 019604 291 CRNCRKEE---SCVLLLPCRHLCLCTVCGSSLH----TCPVCKS 327 (338)
Q Consensus 291 C~vC~~~~---~~vvLlPCrHlclC~~C~~~l~----~CPvCR~ 327 (338)
|.+|+... ...+|++|+|. +|..|...+. .||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77887765 56899999999 9999999986 9999984
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.66 E-value=1.6e-05 Score=54.59 Aligned_cols=34 Identities=35% Similarity=0.877 Sum_probs=28.5
Q ss_pred cccccccCcce-EEeCCCCcccchhHHhcC----CCCCCC
Q 019604 291 CRNCRKEESCV-LLLPCRHLCLCTVCGSSL----HTCPVC 325 (338)
Q Consensus 291 C~vC~~~~~~v-vLlPCrHlclC~~C~~~l----~~CPvC 325 (338)
|.||++...+. +++||||. +|.+|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999998888 79999999 999998774 789988
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.62 E-value=3.9e-05 Score=72.78 Aligned_cols=46 Identities=28% Similarity=0.693 Sum_probs=37.2
Q ss_pred cccccccccCcc--------eEEeCCCCcccchhHHhcC----CCCCCCCCCCCceEEE
Q 019604 289 RLCRNCRKEESC--------VLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVHV 335 (338)
Q Consensus 289 ~~C~vC~~~~~~--------vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~V 335 (338)
..|.||++.... .++.||+|. +|..|-..+ .+||+||.++.+.++.
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 469999986322 467789998 999998764 7999999999887765
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=6.1e-05 Score=73.00 Aligned_cols=51 Identities=25% Similarity=0.570 Sum_probs=42.7
Q ss_pred CCcccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceEEEe
Q 019604 285 SGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVHVN 336 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~V~ 336 (338)
....+.|.+|.+...+--..||||+ ||-.|-..+ ..||+||....-.-.|.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence 3456899999999999999999999 999998764 68999999887655443
No 14
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.44 E-value=0.0001 Score=47.79 Aligned_cols=34 Identities=38% Similarity=0.984 Sum_probs=30.3
Q ss_pred cccccccCcceEEeCCCCcccchhHHhcC-----CCCCCC
Q 019604 291 CRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVC 325 (338)
Q Consensus 291 C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvC 325 (338)
|.||++.....+++||+|. +|..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 999999753 679987
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.42 E-value=3.8e-05 Score=53.76 Aligned_cols=36 Identities=36% Similarity=0.843 Sum_probs=30.1
Q ss_pred ccccccccC---cceEEeCCCCcccchhHHhcC----CCCCCCC
Q 019604 290 LCRNCRKEE---SCVLLLPCRHLCLCTVCGSSL----HTCPVCK 326 (338)
Q Consensus 290 ~C~vC~~~~---~~vvLlPCrHlclC~~C~~~l----~~CPvCR 326 (338)
.|.||++.. ..++.+||+|. +|..|...+ .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 489998854 67889999998 999998875 7999997
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.39 E-value=0.0001 Score=49.46 Aligned_cols=39 Identities=41% Similarity=0.982 Sum_probs=30.7
Q ss_pred ccccccccC-cceEEeCCCCcccchhHHhc-----CCCCCCCCCCC
Q 019604 290 LCRNCRKEE-SCVLLLPCRHLCLCTVCGSS-----LHTCPVCKSPK 329 (338)
Q Consensus 290 ~C~vC~~~~-~~vvLlPCrHlclC~~C~~~-----l~~CPvCR~~i 329 (338)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999987 45555569999 99999974 35799999753
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.8e-05 Score=69.91 Aligned_cols=48 Identities=29% Similarity=0.607 Sum_probs=41.1
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-------CCCCCCCCCCCceEE
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-------HTCPVCKSPKTVSVH 334 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-------~~CPvCR~~i~~~V~ 334 (338)
...-.|-||++...+-|+-+|||| +|-.|--.+ +.||||+..|...-.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 345689999999999999999999 999998774 688999998876443
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00014 Score=66.39 Aligned_cols=49 Identities=22% Similarity=0.573 Sum_probs=37.9
Q ss_pred ccccccccccCcceE-E-eCCCCcccchhHHhcC----CCCCCCCCCCC--ceEEEee
Q 019604 288 SRLCRNCRKEESCVL-L-LPCRHLCLCTVCGSSL----HTCPVCKSPKT--VSVHVNM 337 (338)
Q Consensus 288 ~~~C~vC~~~~~~vv-L-lPCrHlclC~~C~~~l----~~CPvCR~~i~--~~V~V~l 337 (338)
.-.|.||++...-.+ + -=|||+ ||..|.+.. .+||+|++.|+ .++.|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 367999999765555 2 579999 999999884 79999997665 4556654
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.11 E-value=0.00018 Score=49.21 Aligned_cols=34 Identities=35% Similarity=0.863 Sum_probs=29.8
Q ss_pred cccccccCcceE-EeCCCCcccchhHHhcC------CCCCCC
Q 019604 291 CRNCRKEESCVL-LLPCRHLCLCTVCGSSL------HTCPVC 325 (338)
Q Consensus 291 C~vC~~~~~~vv-LlPCrHlclC~~C~~~l------~~CPvC 325 (338)
|.||.+.....+ ++||+|. +|..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888888 9999999 999998764 579987
No 20
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.05 E-value=0.00027 Score=53.11 Aligned_cols=43 Identities=30% Similarity=0.721 Sum_probs=37.6
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhc--CCCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSS--LHTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~--l~~CPvCR~~i~~ 331 (338)
...|..|......-+++||+|+ +|..|... ...||+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 4579999999899999999999 99999876 5899999998763
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.99 E-value=0.00032 Score=71.04 Aligned_cols=46 Identities=24% Similarity=0.621 Sum_probs=39.3
Q ss_pred CCcccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 285 SGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
......|.||.+...+-++.||+|. ||..|.... ..||+|+..+..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3456799999999988899999999 999998752 579999998764
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=96.82 E-value=0.00038 Score=65.71 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=35.1
Q ss_pred ccccccccccC---------cceEEeCCCCcccchhHHhcC----------CCCCCCCCCCCceE
Q 019604 288 SRLCRNCRKEE---------SCVLLLPCRHLCLCTVCGSSL----------HTCPVCKSPKTVSV 333 (338)
Q Consensus 288 ~~~C~vC~~~~---------~~vvLlPCrHlclC~~C~~~l----------~~CPvCR~~i~~~V 333 (338)
...|.||++.. .--+|.||+|. ||..|-..+ +.||+||..+...+
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 45799999852 23688899999 999998765 23999999877543
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.63 E-value=0.00093 Score=47.08 Aligned_cols=34 Identities=35% Similarity=0.835 Sum_probs=26.5
Q ss_pred cccccccCcceEEeCCCCcccchhHHhcC--------CCCCCC
Q 019604 291 CRNCRKEESCVLLLPCRHLCLCTVCGSSL--------HTCPVC 325 (338)
Q Consensus 291 C~vC~~~~~~vvLlPCrHlclC~~C~~~l--------~~CPvC 325 (338)
|.||++-..+=+.+||||. +|..|...+ -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899999999999999999 999998774 268887
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.51 E-value=0.0018 Score=47.68 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=36.1
Q ss_pred cccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 289 ~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
..|.+|++--.+-++.||||. +|..|...+ ..||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 369999998888899999998 999998874 689999998743
No 25
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00086 Score=59.88 Aligned_cols=40 Identities=33% Similarity=0.749 Sum_probs=35.2
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCC
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKS 327 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~ 327 (338)
....|.||++....-.++||+|. +|..|...+ -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 35689999998888899999999 999999885 48999993
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0019 Score=66.92 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=38.1
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhc---------CCCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSS---------LHTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~---------l~~CPvCR~~i~~ 331 (338)
...|.||+..+...++.-|||. +|..|--. ...||+|+..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6789999999999999999999 99999643 3799999998876
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.18 E-value=0.0017 Score=46.28 Aligned_cols=27 Identities=37% Similarity=0.935 Sum_probs=17.3
Q ss_pred cccccccCcc----eEEeCCCCcccchhHHhcC
Q 019604 291 CRNCRKEESC----VLLLPCRHLCLCTVCGSSL 319 (338)
Q Consensus 291 C~vC~~~~~~----vvLlPCrHlclC~~C~~~l 319 (338)
|.||++ ..+ -++|||||. +|.+|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788888 666 677899999 999999875
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0021 Score=61.87 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=36.4
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhc------CCCCCCCCCCCC
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSS------LHTCPVCKSPKT 330 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~------l~~CPvCR~~i~ 330 (338)
...|.+|.+.+-+-...||||+ ||-.|--. ...||+||+...
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 5689999999999999999999 99999755 368999998653
No 29
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0071 Score=59.56 Aligned_cols=42 Identities=26% Similarity=0.637 Sum_probs=35.0
Q ss_pred ccccccccccC---cceEEeCCCCcccchhHHhcC-----CCCCCCCCCCC
Q 019604 288 SRLCRNCRKEE---SCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKT 330 (338)
Q Consensus 288 ~~~C~vC~~~~---~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~ 330 (338)
...|.||+++. -.++.+||.|. +=..|..++ .+||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 47899999843 34788999999 889999885 69999999875
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.48 E-value=0.0056 Score=60.05 Aligned_cols=45 Identities=27% Similarity=0.553 Sum_probs=39.1
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
.....|.||...-+--++-||||. ||.-|...- ..||+||.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 446789999999999999999999 999999873 799999987543
No 31
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.40 E-value=0.011 Score=59.20 Aligned_cols=46 Identities=24% Similarity=0.706 Sum_probs=39.5
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC------CCCCCCCCCCCce
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL------HTCPVCKSPKTVS 332 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l------~~CPvCR~~i~~~ 332 (338)
.....|.||-..---+.++||+|. +|..|+-.+ +.||+||..-...
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceE
Confidence 446899999999999999999999 999999875 7999999765443
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=95.09 E-value=0.0063 Score=60.72 Aligned_cols=46 Identities=26% Similarity=0.600 Sum_probs=40.4
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCce
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVS 332 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~ 332 (338)
.+...|-||++-..--+|.||+|. +|.-|.... ..||.|+.+++.+
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 456789999999999999999999 999999874 7999999987653
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.0084 Score=62.75 Aligned_cols=42 Identities=33% Similarity=0.698 Sum_probs=36.4
Q ss_pred ccccccccccCcc-----eEEeCCCCcccchhHHhcC----CCCCCCCCCCC
Q 019604 288 SRLCRNCRKEESC-----VLLLPCRHLCLCTVCGSSL----HTCPVCKSPKT 330 (338)
Q Consensus 288 ~~~C~vC~~~~~~-----vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~ 330 (338)
...|.||.+.-.. ...+||+|. ++..|-..+ .+||+||..+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 4579999998777 799999999 999999885 89999998443
No 34
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.016 Score=58.24 Aligned_cols=44 Identities=27% Similarity=0.615 Sum_probs=37.2
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhc-C---CCCCCCCCCCC
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSS-L---HTCPVCKSPKT 330 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~-l---~~CPvCR~~i~ 330 (338)
.....|.||+..+.+.+|-||+|. .|..|-.. + +.|-.|...+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceee
Confidence 345799999999999999999999 99999876 3 67778876654
No 35
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.46 E-value=0.019 Score=44.88 Aligned_cols=27 Identities=33% Similarity=0.835 Sum_probs=21.1
Q ss_pred cceEEeCCCCcccchhHHhcC----CCCCCCC
Q 019604 299 SCVLLLPCRHLCLCTVCGSSL----HTCPVCK 326 (338)
Q Consensus 299 ~~vvLlPCrHlclC~~C~~~l----~~CPvCR 326 (338)
..+++.+|+|. +-..|-... .+||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 45577899999 999998763 7999998
No 36
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.017 Score=58.27 Aligned_cols=44 Identities=34% Similarity=0.773 Sum_probs=32.7
Q ss_pred CCcccccccccccC-------------cceEEeCCCCcccchhHHhcC----CCCCCCCCCC
Q 019604 285 SGGSRLCRNCRKEE-------------SCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPK 329 (338)
Q Consensus 285 ~~~~~~C~vC~~~~-------------~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i 329 (338)
..+.+.|.||++.- +.--=+||||. +=-.|-+.+ ++|||||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 45578999999961 11134799998 777787764 8999999984
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.027 Score=56.39 Aligned_cols=43 Identities=28% Similarity=0.633 Sum_probs=33.4
Q ss_pred cccccccccC---cceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCce
Q 019604 289 RLCRNCRKEE---SCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTVS 332 (338)
Q Consensus 289 ~~C~vC~~~~---~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~~ 332 (338)
..|.||++.. --+.+|||.|- +=..|.+.+ ..||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 4799999843 45667999999 767888875 4599999987654
No 38
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.11 Score=50.66 Aligned_cols=45 Identities=22% Similarity=0.584 Sum_probs=36.1
Q ss_pred CCcccccccccccCc-ceEEeCCCCcccchhHHhcC------CCCCCCCCCCC
Q 019604 285 SGGSRLCRNCRKEES-CVLLLPCRHLCLCTVCGSSL------HTCPVCKSPKT 330 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~-~vvLlPCrHlclC~~C~~~l------~~CPvCR~~i~ 330 (338)
+.....|.+|.+.+. -.++.||+|. .|..|...- -.||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 445678999999875 4666789997 999998873 38999998765
No 39
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.33 E-value=0.13 Score=49.17 Aligned_cols=46 Identities=30% Similarity=0.577 Sum_probs=37.9
Q ss_pred Ccccccccccc----cCcceEEeCCCCcccchhHHhcCC---CCCCCCCCCCce
Q 019604 286 GGSRLCRNCRK----EESCVLLLPCRHLCLCTVCGSSLH---TCPVCKSPKTVS 332 (338)
Q Consensus 286 ~~~~~C~vC~~----~~~~vvLlPCrHlclC~~C~~~l~---~CPvCR~~i~~~ 332 (338)
.....|.|... ...-|+|+||||+ ++..+...+. .||+|..++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 34578999875 4567899999998 9999999886 899999998754
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.01 E-value=0.12 Score=56.51 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=33.4
Q ss_pred cccccccccCcceEE---eCCCCcccchhHHhcC----CCCCCCCCCCCceEE
Q 019604 289 RLCRNCRKEESCVLL---LPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVH 334 (338)
Q Consensus 289 ~~C~vC~~~~~~vvL---lPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~ 334 (338)
..|.+|+....+-++ .||.|. ||..|...+ .+||+||..+..++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 456666654444433 689999 999999885 899999987776554
No 41
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=0.12 Score=49.83 Aligned_cols=44 Identities=25% Similarity=0.486 Sum_probs=37.2
Q ss_pred cccccccccc----cCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRK----EESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~----~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
..-.|.+|++ ...+++|.||||+ +|.+|+.++ ..||+|..+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 3468999998 4577899999999 999999996 799999987654
No 42
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=91.33 E-value=4 Score=41.56 Aligned_cols=41 Identities=27% Similarity=0.504 Sum_probs=31.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHH
Q 019604 119 FLGNDMSFQIQEQQFDIDRLISQHME----------KVRMEVEERKKRQVR 159 (338)
Q Consensus 119 ~l~~~l~~ql~qQ~~EID~~i~~q~E----------rLR~~L~E~R~rq~r 159 (338)
.-||||.++|++.+..+-+-|.++.+ +|-+.|++-|+||-.
T Consensus 135 aeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 135 AEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999888887777776644 566778899999853
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.11 Score=52.16 Aligned_cols=46 Identities=22% Similarity=0.600 Sum_probs=36.6
Q ss_pred cccccccccccCcceE-----E---eCCCCcccchhHHhcC-----------CCCCCCCCCCCceE
Q 019604 287 GSRLCRNCRKEESCVL-----L---LPCRHLCLCTVCGSSL-----------HTCPVCKSPKTVSV 333 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vv-----L---lPCrHlclC~~C~~~l-----------~~CPvCR~~i~~~V 333 (338)
....|.||++.-.... | .+|.|- +|..|...+ +.||+||......+
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 4678999999766666 4 779999 999998763 68999998776543
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=90.80 E-value=0.12 Score=40.26 Aligned_cols=41 Identities=29% Similarity=0.655 Sum_probs=21.8
Q ss_pred ccccccccccCcce-EEeCCCCcccchhHHhcC--CCCCCCCCCC
Q 019604 288 SRLCRNCRKEESCV-LLLPCRHLCLCTVCGSSL--HTCPVCKSPK 329 (338)
Q Consensus 288 ~~~C~vC~~~~~~v-vLlPCrHlclC~~C~~~l--~~CPvCR~~i 329 (338)
...|.+|.+--..- .+--|-|. ||..|...- ..||+|+.|-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 46799999876555 46789999 999999884 7899999874
No 45
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=90.56 E-value=0.72 Score=44.53 Aligned_cols=48 Identities=23% Similarity=0.525 Sum_probs=26.0
Q ss_pred ccccccccccCcceEEeCC-----CCcccchhHHhcC----CCCCCCCCCCCceEEEe
Q 019604 288 SRLCRNCRKEESCVLLLPC-----RHLCLCTVCGSSL----HTCPVCKSPKTVSVHVN 336 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPC-----rHlclC~~C~~~l----~~CPvCR~~i~~~V~V~ 336 (338)
...|.||+..+.-.+|.+= ||+ .|.-|...+ -.||.|.......++.|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 3579999999888777765 455 899999885 69999999888877765
No 46
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=90.21 E-value=0.25 Score=49.17 Aligned_cols=49 Identities=10% Similarity=-0.081 Sum_probs=42.3
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcC--CCCCCCCCCCCceEEE
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL--HTCPVCKSPKTVSVHV 335 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l--~~CPvCR~~i~~~V~V 335 (338)
..+.|.+|..+....++.||+|.-+|.+|+..- .+||+|..-..-.|.|
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 357899999999999999999999999999863 7999998876666655
No 47
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=0.11 Score=51.03 Aligned_cols=45 Identities=31% Similarity=0.595 Sum_probs=39.8
Q ss_pred ccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceEEE
Q 019604 290 LCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVHV 335 (338)
Q Consensus 290 ~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~V 335 (338)
.|.||+.-..+-|.--|+|. +|..|+..- ..|++|.+.+.+++.+
T Consensus 243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred cccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 59999999988888999999 999999873 6899999999887654
No 48
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=0.14 Score=52.35 Aligned_cols=40 Identities=33% Similarity=0.727 Sum_probs=31.8
Q ss_pred ccccccccccC---cceEEeCCCCcccchhHHhcC------------CCCCCCCCC
Q 019604 288 SRLCRNCRKEE---SCVLLLPCRHLCLCTVCGSSL------------HTCPVCKSP 328 (338)
Q Consensus 288 ~~~C~vC~~~~---~~vvLlPCrHlclC~~C~~~l------------~~CPvCR~~ 328 (338)
.-.|.||++.. .+++++||+|+ +|+.|.... -+||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 45799999854 66999999999 999998873 478766544
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.77 E-value=19 Score=34.47 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH----HH
Q 019604 127 QIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIE--EGVMKKLKAKEDEIEKIGKLNWALEERVKSLC----IE 200 (338)
Q Consensus 127 ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE--~~v~~rLReKE~EiEr~~r~n~ELEErlrql~----~E 200 (338)
.+.+-+.|++...+.+.+.|+........... .+=+ ..+..++.....||+.+..+|..|+.+|..+. .+
T Consensus 181 ~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~----~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~ 256 (312)
T PF00038_consen 181 IAQKNREELEEWYQSKLEELRQQSEKSSEELE----SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE 256 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhcccccccccccccccccccc----hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH
Confidence 44566678888888888777776655332222 2222 24457788999999999999999999998764 55
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 201 NQIWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 201 ~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
.+.|+..-...|+-...|+..+++.+.
T Consensus 257 ~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 257 REEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 567888877888888888887765553
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=89.37 E-value=0.1 Score=49.04 Aligned_cols=46 Identities=26% Similarity=0.615 Sum_probs=40.0
Q ss_pred cccccccccCcceEEeCCCCcccchhHHhc----CCCCCCCCCCCCceEEE
Q 019604 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSS----LHTCPVCKSPKTVSVHV 335 (338)
Q Consensus 289 ~~C~vC~~~~~~vvLlPCrHlclC~~C~~~----l~~CPvCR~~i~~~V~V 335 (338)
-.|.||.....+-|+--|||. +|..|+.. -..|-+|.....+.+.|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 489999999999999999999 99999977 37999999887776654
No 51
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.86 E-value=16 Score=33.84 Aligned_cols=93 Identities=24% Similarity=0.263 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH--------HHH
Q 019604 127 QIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVK--------SLC 198 (338)
Q Consensus 127 ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlr--------ql~ 198 (338)
.++....+|.++|..|.+.+|.-=+..|+-+- -+..+.++|++++.||.++.-....|+.-+. .|.
T Consensus 51 k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~------~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~ 124 (194)
T PF15619_consen 51 KYEDTEAELPQLLQRHNEEVRVLRERLRKSQE------QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQ 124 (194)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 45666778888899999998877666665443 4677788999999999987766655544222 333
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 199 IENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 199 ~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
.+-..-......++-.+..|..+|+-.
T Consensus 125 ~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566666666655533
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=0.2 Score=51.23 Aligned_cols=45 Identities=22% Similarity=0.556 Sum_probs=37.3
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhc----CCCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSS----LHTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 331 (338)
+..-.|.||....-..+..||||. +|..|... -..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 456789999998877777799999 99999444 3799999988764
No 53
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=88.41 E-value=0.31 Score=37.77 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=33.1
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
..-.|.+|+.--.+=+++||||. ++..|-... ..||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35689999999999999999977 999987763 679999988875
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.00 E-value=20 Score=39.30 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=39.2
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLE 223 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~Le 223 (338)
..|.++.|.||.++++.....||+++.++.|.+.-+..-+.++.-+-.|.+.|.
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 346788899999999999999999999999997776653444444444444443
No 55
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.68 E-value=31 Score=36.27 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=67.5
Q ss_pred HHHHHHHHH----HHHHHHHHhHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 019604 125 SFQIQEQQF----DIDRLISQHMEKVR----MEVEERKK-RQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 125 ~~ql~qQ~~----EID~~i~~q~ErLR----~~L~E~R~-rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlr 195 (338)
.+||+-|+. .+-.+.+.|.|.+| ..++|.+. .|-...+.++...+-+||.+...-+++..+..++++|-=+
T Consensus 327 ~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENK 406 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665554 23334444444444 45566666 7777888999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 019604 196 SLCIENQIWRDLAQSNEA 213 (338)
Q Consensus 196 ql~~E~q~Wq~~Ak~nEA 213 (338)
.|...-+.|+.+.+.-+.
T Consensus 407 ~l~knq~vw~~kl~~~~e 424 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEE 424 (493)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 899999999999866553
No 56
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.35 E-value=0.41 Score=47.14 Aligned_cols=43 Identities=28% Similarity=0.651 Sum_probs=33.8
Q ss_pred cccccccccccCcceEEeCC--CCcccchhHHhc-CCCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLLPC--RHLCLCTVCGSS-LHTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPC--rHlclC~~C~~~-l~~CPvCR~~i~~ 331 (338)
+...|.||.+.-.-=++ =| ||+ +|..|... ...||.||.+|..
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 45789999987554444 35 799 99999955 5899999999873
No 57
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.99 E-value=0.31 Score=52.85 Aligned_cols=40 Identities=23% Similarity=0.669 Sum_probs=35.2
Q ss_pred cccccccccCcceEEeCCCCcccchhHHhcC------CCCCCCCCCCC
Q 019604 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSL------HTCPVCKSPKT 330 (338)
Q Consensus 289 ~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l------~~CPvCR~~i~ 330 (338)
..|.+|.+ ..+.++.+|+|. +|.+|.... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 999999999999 999998874 57999997654
No 58
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=0.39 Score=47.82 Aligned_cols=43 Identities=26% Similarity=0.797 Sum_probs=31.9
Q ss_pred cccccccccccCcce--EEeCCCCcccchhHHhcC--CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCV--LLLPCRHLCLCTVCGSSL--HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~v--vLlPCrHlclC~~C~~~l--~~CPvCR~~i~~ 331 (338)
....|.-|. .+.-+ -++||.|. ||.+|+..- +.||.|--.|..
T Consensus 89 ~VHfCd~Cd-~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 89 RVHFCDRCD-FPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred ceEeecccC-Ccceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 356788884 34333 36899999 999999874 699999876544
No 59
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.55 E-value=16 Score=40.73 Aligned_cols=50 Identities=26% Similarity=0.171 Sum_probs=25.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHH---H-HHHHhhHHHHHHHHhhHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIW---R-DLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~W---q-~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
|..+.|+..||.+|-++|.+|-+-|.+.- | .+|++.|..+. -++.|+|-.
T Consensus 954 k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k-~q~~~Eqer 1007 (1259)
T KOG0163|consen 954 KRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAK-RQNQLEQER 1007 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 33455666666666666666665555522 2 34444444332 234455543
No 60
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.54 E-value=32 Score=29.87 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=22.2
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEA 213 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA 213 (338)
..+++.++.|+++....+..|++++..+..|...++..-+.-+.
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555444433333
No 61
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.71 E-value=0.51 Score=49.51 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=33.8
Q ss_pred Ccccccccccc-----------------cCcceEEeCCCCcccchhHHhcC----C-CCCCCCCCCCc
Q 019604 286 GGSRLCRNCRK-----------------EESCVLLLPCRHLCLCTVCGSSL----H-TCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~-----------------~~~~vvLlPCrHlclC~~C~~~l----~-~CPvCR~~i~~ 331 (338)
+....|+||+. -.++.+|-||.|. +=..|-... + .||+||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45578999987 1235667799998 888887763 2 89999998753
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.84 E-value=20 Score=35.52 Aligned_cols=28 Identities=36% Similarity=0.147 Sum_probs=12.6
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
+|++-+.||+...++..++++++..+..
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~ 239 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELES 239 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.78 E-value=79 Score=34.01 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=50.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 019604 141 QHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANAL 218 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~L 218 (338)
.++++|...|...++.. ..|....+ .+.........|++.+...+.++.+|+++|..+...+....+.++.....|
T Consensus 171 ~~v~~l~~eL~~~~ee~-e~L~~~~k-el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l 246 (546)
T PF07888_consen 171 EEVERLEAELEQEEEEM-EQLKQQQK-ELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL 246 (546)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666655533 33433333 333445566778888888899999999999999998888887776555444
No 64
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.55 E-value=17 Score=30.76 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=40.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 139 ISQHMEKVRMEVEERKKRQVRIIMDVIEEGVM---KKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 139 i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~---~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
|+.|+.-|+.++-+-+.+.. .+...+. ..||..+.|++-++.+|..|+-|+..|..|-.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~-----~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA-----ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766554443 2222221 24677788889999999999999888877765
No 65
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.39 E-value=0.19 Score=50.61 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=36.1
Q ss_pred CcccccccccccC-cceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCce
Q 019604 286 GGSRLCRNCRKEE-SCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTVS 332 (338)
Q Consensus 286 ~~~~~C~vC~~~~-~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~~ 332 (338)
.....|.||++-- ..+...-|.|. ||.+|.+.. ..||.||+...+.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 3457899999853 44555679999 999999883 7999999876553
No 66
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=80.37 E-value=0.39 Score=46.36 Aligned_cols=39 Identities=31% Similarity=0.893 Sum_probs=30.2
Q ss_pred cccccccccc-----CcceEEeC-CCCcccchhHHhcC-----CCCC--CCCC
Q 019604 288 SRLCRNCRKE-----ESCVLLLP-CRHLCLCTVCGSSL-----HTCP--VCKS 327 (338)
Q Consensus 288 ~~~C~vC~~~-----~~~vvLlP-CrHlclC~~C~~~l-----~~CP--vCR~ 327 (338)
...|.+|... ..-+++-| |-|. +|..|...+ ..|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 4689999862 34556668 9999 999999985 6899 7754
No 67
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=80.31 E-value=23 Score=27.61 Aligned_cols=83 Identities=16% Similarity=0.301 Sum_probs=49.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH------HHHHHHHhhH
Q 019604 140 SQHMEKVRMEVEERKKRQVRIIMDVIEE-GVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ------IWRDLAQSNE 212 (338)
Q Consensus 140 ~~q~ErLR~~L~E~R~rq~r~ll~avE~-~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q------~Wq~~Ak~nE 212 (338)
+...+++...|.+-++.|.+.|...... ...+ +.|.=...++++...+..+|+++..... .+-...+-..
T Consensus 13 ~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~---el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~ 89 (103)
T PF00804_consen 13 REDIDKIKEKLNELRKLHKKILSSPDQDSELKR---ELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRK 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHH
Confidence 3445677778888888887777666633 2333 3444445556667778999999988854 3333444444
Q ss_pred HHHHHHHhhHHHH
Q 019604 213 ATANALRTNLEQV 225 (338)
Q Consensus 213 A~a~~Lr~~LeQ~ 225 (338)
....+|...++.+
T Consensus 90 nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 90 NQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 68
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=79.15 E-value=1.7 Score=44.05 Aligned_cols=34 Identities=21% Similarity=0.605 Sum_probs=24.4
Q ss_pred CCcccccccccccCcceEEeCCCCcccchhHHhcC-----------------CCCCCCCCCC
Q 019604 285 SGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----------------HTCPVCKSPK 329 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----------------~~CPvCR~~i 329 (338)
......|..|+-++ + =|-+|-.+. -.||.||+.+
T Consensus 300 ~~~~~~C~~C~CRP----------m-WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 300 LPNEPPCQQCYCRP----------M-WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cccCCCCccccccc----------h-HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 34567888887444 3 578887663 4899999875
No 69
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=78.84 E-value=70 Score=36.28 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=44.0
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
++|-..+.-+..+.+.|.+|.+.|.++.-+.+-|-.+..+..-+.-.||..|.-++
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~ 507 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLL 507 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444455566788999999999999999999999999888888877777665443
No 70
>smart00338 BRLZ basic region leucin zipper.
Probab=78.79 E-value=25 Score=26.35 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=16.6
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
+.+.|.+++.+...|.+|..++..|..|.+.+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444
No 71
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=77.95 E-value=79 Score=31.64 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019604 124 MSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGV 169 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v 169 (338)
..+||.+.+.|+.-+|+.+..+|-.-++.+ =+.||.+|+..-
T Consensus 25 av~qL~~~r~~teelIr~rVrq~V~hVqaq----EreLLe~v~~rY 66 (324)
T PF12126_consen 25 AVSQLGRARADTEELIRARVRQVVAHVQAQ----ERELLEAVEARY 66 (324)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 466888999999999998888877665544 467788887543
No 72
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=76.28 E-value=60 Score=31.26 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 131 QQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 131 Q~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
=..|||+-|... +..+..+....++.....++.+.+.++..+.....+++.++.++..+
T Consensus 106 F~~eI~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 106 FEKEIDQKLDEI-----------RQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666554443 44444444444444555555555555555555555555555554443
No 73
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=75.65 E-value=34 Score=29.13 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=41.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhH----HHHHHHhhhhHHHHHHHHHHH
Q 019604 134 DIDRLISQHMEKVRMEVEERKK---RQVRIIMDVIEEGVMKKLKAKE----DEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 134 EID~~i~~q~ErLR~~L~E~R~---rq~r~ll~avE~~v~~rLReKE----~EiEr~~r~n~ELEErlrql~ 198 (338)
-+|.++.--.|.++..+.+.+. .+...|=.+++..+.+-|.... +||+.+..|..+|+.+|.+|.
T Consensus 45 ~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 45 RFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555554 3344555666666666666654 788888888888888887765
No 74
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=75.54 E-value=3.7 Score=31.47 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019604 177 EDEIEKIGKLNWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 177 E~EiEr~~r~n~ELEErlrql~~E~q~Wq~~A 208 (338)
-+|+|-.+.+..+|++|..+|+.||...+..|
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36778888899999999999999999887654
No 75
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=75.48 E-value=0.9 Score=46.47 Aligned_cols=41 Identities=24% Similarity=0.508 Sum_probs=0.0
Q ss_pred cCcceEEeCCCCcccch----hHHhcC--------CCCCCCCCCCCc---eEEEee
Q 019604 297 EESCVLLLPCRHLCLCT----VCGSSL--------HTCPVCKSPKTV---SVHVNM 337 (338)
Q Consensus 297 ~~~~vvLlPCrHlclC~----~C~~~l--------~~CPvCR~~i~~---~V~V~l 337 (338)
.+....|.||||+|.=+ .+.-.+ ..||.|-.++.+ .|+.+|
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 45678899999996311 111111 589999999875 566554
No 76
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=75.30 E-value=68 Score=30.08 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=38.0
Q ss_pred hH-HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 123 DM-SFQIQEQQFDIDRLISQHM---EKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 123 ~l-~~ql~qQ~~EID~~i~~q~---ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
|| ..+|+-|+.-+|++|..+- ++|+..|.-+|+.+. -|..-...+.+-..+.+.|-..+..+..+|..+|++|.
T Consensus 104 eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~--~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 104 EIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQ--QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3467777777777776553 344444444443333 22333333344444445555554445455555555554
Q ss_pred HH
Q 019604 199 IE 200 (338)
Q Consensus 199 ~E 200 (338)
.+
T Consensus 182 ~q 183 (192)
T PF11180_consen 182 RQ 183 (192)
T ss_pred HH
Confidence 43
No 77
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.28 E-value=29 Score=36.51 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 019604 123 DMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIE 181 (338)
Q Consensus 123 ~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiE 181 (338)
.|.+++++-+.|++.+++ ++++|+.+-+..|+|.. .|+..+..+|.....|+.
T Consensus 63 Tlva~~k~~r~~~~~l~~-~N~~l~~eN~~L~~r~~-----~id~~i~~av~~~~~~~~ 115 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLIS-ENEALKAENERLQKREQ-----SIDQQIQQAVQSETQELT 115 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh-----hHHHHHHHHHHhhhHHHH
Confidence 377889999999988764 78889999888888776 666666666655444433
No 78
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=74.92 E-value=1.9 Score=31.35 Aligned_cols=36 Identities=36% Similarity=0.884 Sum_probs=24.8
Q ss_pred ccccccc--cCcceEEeCCC-----CcccchhHHhcC------CCCCCCC
Q 019604 290 LCRNCRK--EESCVLLLPCR-----HLCLCTVCGSSL------HTCPVCK 326 (338)
Q Consensus 290 ~C~vC~~--~~~~vvLlPCr-----HlclC~~C~~~l------~~CPvCR 326 (338)
.|.||++ .+.+.++.||. |+ +=..|.... ..||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 66778899995 22 224565552 4899995
No 79
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.82 E-value=52 Score=37.54 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=62.7
Q ss_pred HHHHHHHHHHH-HHHHHHh----------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh------hHHH
Q 019604 125 SFQIQEQQFDI-DRLISQH----------------MEKVRMEVEERKKRQV--RIIMDVIEEGVMKKLKA------KEDE 179 (338)
Q Consensus 125 ~~ql~qQ~~EI-D~~i~~q----------------~ErLR~~L~E~R~rq~--r~ll~avE~~v~~rLRe------KE~E 179 (338)
.-||++|+.-+ |.+||+. .|+.+.++.|.++.-= ..=+.-+|..++.---+ .|+=
T Consensus 370 fkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~M 449 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEM 449 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Confidence 45777777654 6777643 5666666665543211 11122333333322111 3556
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 180 IEKIGKLNWALEERVKSLCIENQ-------IWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 180 iEr~~r~n~ELEErlrql~~E~q-------~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
++.+.-+|.+|||||+.|+-|.. .--.++.+|......||-.|+++-
T Consensus 450 V~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 450 VEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888899999999988887765 444566667777788999998883
No 80
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.79 E-value=25 Score=32.93 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019604 142 HMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQI 203 (338)
Q Consensus 142 q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~ 203 (338)
|.+.++..|.+.++... .....+..++.+.+.++..+...|.+|.+.+..+..|++.
T Consensus 101 el~~l~~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 101 QVKTLTDKLNNIDNTWN-----QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555443322 2222334445555666666666777777766666665544
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.83 E-value=46 Score=36.92 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 165 IEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 165 vE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
....+++|||+|+.|-+.+-+| +-+.|+.|.-|.+....+-...|.|--.++-++...-+
T Consensus 471 ~qs~iIkKLRAk~ke~etl~~K---~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~a 530 (961)
T KOG4673|consen 471 AQSAIIKKLRAKIKEAETLEEK---KGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQA 530 (961)
T ss_pred HHHHHHHHHHHHhhhhhHHHHH---hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3467889999999999988777 44567888888888888888888887777776665443
No 82
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.76 E-value=15 Score=31.00 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=44.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 119 FLGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 119 ~l~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
+++..+.--+.--+.=|+.++..| ..|...-.....++++...+++++.++..++.+.++.|.
T Consensus 52 ~~dp~~~klfrLaQl~ieYLl~~q-----------------~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 52 FVDPNFLKLFRLAQLSIEYLLHCQ-----------------EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455666666555 223333445557788888999999999999999999988
Q ss_pred HHH
Q 019604 199 IEN 201 (338)
Q Consensus 199 ~E~ 201 (338)
.|.
T Consensus 115 ~E~ 117 (118)
T PF13815_consen 115 KES 117 (118)
T ss_pred Hhc
Confidence 774
No 83
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=71.40 E-value=1.6 Score=43.71 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=39.6
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhc-----CCCCCCCCCCCCceEE
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSS-----LHTCPVCKSPKTVSVH 334 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~~V~ 334 (338)
+....|.+|+.+..-+.+.||+|-++|..|... ...||+|...+.....
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~ 187 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQ 187 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhc
Confidence 345789999999999999999999999876444 4789999876665444
No 84
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=71.28 E-value=1.2 Score=47.19 Aligned_cols=43 Identities=28% Similarity=0.641 Sum_probs=36.2
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC---------CCCCCCCCCC
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL---------HTCPVCKSPK 329 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l---------~~CPvCR~~i 329 (338)
.+...|.+|.+...+.+.--|.|. +|.-|.... -+||+|....
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 345789999999999999999998 999998552 5999997654
No 85
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=70.49 E-value=1.8e+02 Score=33.55 Aligned_cols=15 Identities=0% Similarity=0.074 Sum_probs=9.7
Q ss_pred ccCCCCceecCCCCC
Q 019604 82 NKSDSSLTYNNYENN 96 (338)
Q Consensus 82 ~~~~s~lt~~~~~~~ 96 (338)
+.+..|.+-++.+..
T Consensus 816 ~~a~~~s~S~g~sak 830 (1283)
T KOG1916|consen 816 AGAELGSDSRGFSAK 830 (1283)
T ss_pred hhhhhccccCCCccc
Confidence 456777777766543
No 86
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=70.47 E-value=1.2e+02 Score=31.13 Aligned_cols=106 Identities=11% Similarity=0.166 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHH----------HHHHHHHhhHHHHHHHhh
Q 019604 125 SFQIQEQQFDIDRLISQHMEKVRMEVEERK---------KRQVRIIMDVIEE----------GVMKKLKAKEDEIEKIGK 185 (338)
Q Consensus 125 ~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R---------~rq~r~ll~avE~----------~v~~rLReKE~EiEr~~r 185 (338)
..-++.++.|.++ ++.|+++|...|-..| ..|+..++.-.++ +..+-.+|||+|-..++|
T Consensus 91 ~es~~e~q~e~~q-L~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 91 RESVEERQQESEQ-LQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 3456777777776 4778888877776544 2333344433332 223334566666655554
Q ss_pred hhHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHhhHHHHHHHHhH
Q 019604 186 LNWALEERVKSLCIENQI----WRDLAQSNEATANALRTNLEQVLASAAA 231 (338)
Q Consensus 186 ~n~ELEErlrql~~E~q~----Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~~~ 231 (338)
..+|--.....|..|.|+ =+.+-+..++-+..|++..+.++-...+
T Consensus 170 ELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 170 ELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433344445555553 2344455556666666666666655544
No 87
>PRK09039 hypothetical protein; Validated
Probab=70.36 E-value=1.2e+02 Score=30.31 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=41.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLAS 228 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~ 228 (338)
+--+|++++.....|+.++..|..+-..=...-+..+.-...|...|+.++++
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667777777888888888888877777777888888899999988866
No 88
>PRK12704 phosphodiesterase; Provisional
Probab=70.25 E-value=1.5e+02 Score=31.46 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=5.2
Q ss_pred ccCcceEEeCC
Q 019604 296 KEESCVLLLPC 306 (338)
Q Consensus 296 ~~~~~vvLlPC 306 (338)
+....++++.|
T Consensus 247 ddtp~~v~ls~ 257 (520)
T PRK12704 247 DDTPEAVILSG 257 (520)
T ss_pred cCCCCeEEEec
Confidence 34445555544
No 89
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=69.68 E-value=15 Score=36.39 Aligned_cols=41 Identities=24% Similarity=0.642 Sum_probs=27.1
Q ss_pred ccccccccccCcceEEeCC------CCcccchhHHhcC----CCCCCCCCCC
Q 019604 288 SRLCRNCRKEESCVLLLPC------RHLCLCTVCGSSL----HTCPVCKSPK 329 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPC------rHlclC~~C~~~l----~~CPvCR~~i 329 (338)
...|.||.+.+.--++..- ||+ .|.-|...+ -+||.|....
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYL-SCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEE-EcCCCCCcccccCccCCCCCCCC
Confidence 3468888888854444332 233 788887775 5888888753
No 90
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.74 E-value=47 Score=35.20 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=11.7
Q ss_pred HHHHHhhhhHHHHHHHHHHH
Q 019604 179 EIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 179 EiEr~~r~n~ELEErlrql~ 198 (338)
-|+++++|+++|+.|+=++-
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~ 396 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVM 396 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666655543
No 91
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=68.66 E-value=1.1e+02 Score=29.04 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=58.5
Q ss_pred HHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhHHHHHHHhhhhHHHHHHHH
Q 019604 134 DIDRLISQHMEKVRM---EVEERKKRQVRIIMDVIEEGVMKKLK---------------AKEDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 134 EID~~i~~q~ErLR~---~L~E~R~rq~r~ll~avE~~v~~rLR---------------eKE~EiEr~~r~n~ELEErlr 195 (338)
-=.++|.+++|-.+- =|+|---||+. +.|+..+...|.+ .-++||-.+++|+.|||-|||
T Consensus 69 kEErILaLEad~~kWEqkYLEEs~mrq~a--~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK 146 (205)
T PF12240_consen 69 KEERILALEADMTKWEQKYLEESAMRQFA--MDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIK 146 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHH
Confidence 345889999887763 38888888884 3344555555655 337999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhh
Q 019604 196 SLCIENQIWRDLAQSNEATANALRTN 221 (338)
Q Consensus 196 ql~~E~q~Wq~~Ak~nEA~a~~Lr~~ 221 (338)
.|.++- .+.+||+..|+..
T Consensus 147 ~LhaqI-------~EKDAmIkVLQqr 165 (205)
T PF12240_consen 147 ALHAQI-------AEKDAMIKVLQQR 165 (205)
T ss_pred HHHHHH-------HHHHHHHHHHHhh
Confidence 998754 3578999876543
No 92
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=68.59 E-value=62 Score=34.76 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHh
Q 019604 141 QHMEKVRMEVEERKKRQVRI--IMDVIEEGV---MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ-IWRDLAQS 210 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~r~--ll~avE~~v---~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q-~Wq~~Ak~ 210 (338)
+...+|+.++.+.|++.-.+ .+..++..+ ..+|-++++|+.-+.++...||+.++.|..|+. .|-.++..
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34456666666666665544 333444333 467888999999999999999999999999986 55555433
No 93
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=68.15 E-value=43 Score=30.78 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019604 154 KKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQS 210 (338)
Q Consensus 154 R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~ 210 (338)
-+++.....+-+...|-.-.++.++||.++.++...|| .+......|+.+|-.
T Consensus 103 VqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le----~~~~~~k~LrnKa~~ 155 (171)
T PF04799_consen 103 VQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLE----EIQSKSKTLRNKANW 155 (171)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 33334444444444455555666777777555544444 444455556555433
No 94
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=68.05 E-value=37 Score=26.95 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 146 VRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 146 LR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
++..++..-+..+...|+.++-....-.-.--+.+.+++.+..+||.||..|+
T Consensus 25 ~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 25 PREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444332222233334445555556666777777665
No 95
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.94 E-value=1.3e+02 Score=29.50 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=41.3
Q ss_pred HHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---hhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 130 EQQFDID---RLISQHMEKVRMEVEERKKRQVRIIMDVIEE----GVMKKLK---AKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 130 qQ~~EID---~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~----~v~~rLR---eKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
.|++|+| .+++...+.|-..++++++.=..+++..+-. ++..+.+ .-..||.+-+....+|++.+.+|.+
T Consensus 135 ~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 135 SQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544 4455555555555555555444444333322 2222221 1234566666677777777777777
Q ss_pred HHHHHHHHH
Q 019604 200 ENQIWRDLA 208 (338)
Q Consensus 200 E~q~Wq~~A 208 (338)
|.+.-+.-+
T Consensus 215 eV~~L~~~~ 223 (258)
T PF15397_consen 215 EVEQLQAQA 223 (258)
T ss_pred HHHHHHHhh
Confidence 776654443
No 96
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=67.89 E-value=31 Score=33.48 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=15.5
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 019604 119 FLGNDMSFQIQEQQFDIDRLI 139 (338)
Q Consensus 119 ~l~~~l~~ql~qQ~~EID~~i 139 (338)
+.||.+..+|++--.++|.+.
T Consensus 157 l~Gd~l~~eLqkr~~~v~~l~ 177 (289)
T COG4985 157 LDGDPLERELQKRLLEVETLR 177 (289)
T ss_pred ccCcHHHHHHHHHHHHHHHHH
Confidence 336888889988877777653
No 97
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=67.75 E-value=2.7 Score=42.64 Aligned_cols=49 Identities=24% Similarity=0.511 Sum_probs=40.0
Q ss_pred CcccccccccccCcceEE-eCCCCcccchhHHhcC----CCCCCCCCCCCceEEE
Q 019604 286 GGSRLCRNCRKEESCVLL-LPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVHV 335 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvL-lPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~V 335 (338)
.....|.+|..--.+-+. ..|+|. +|..|.... ..||.|+..+...-.+
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhcc
Confidence 345789999998888888 599999 999999884 6899998877655443
No 98
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.57 E-value=1.7e+02 Score=30.87 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019604 189 ALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 189 ELEErlrql~~E~q~Wq~~ 207 (338)
+|..+|+.|+.=...|...
T Consensus 382 ~~~~~~~~le~~~~~~~~~ 400 (582)
T PF09731_consen 382 ELNSRLKALEEALDARSEA 400 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433444333
No 99
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.52 E-value=59 Score=25.58 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=7.8
Q ss_pred HHHHHhhHHHHHHHh
Q 019604 170 MKKLKAKEDEIEKIG 184 (338)
Q Consensus 170 ~~rLReKE~EiEr~~ 184 (338)
.++|++||+.|+.+.
T Consensus 4 ~~~l~EKDe~Ia~L~ 18 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLM 18 (74)
T ss_pred HHHHHhHHHHHHHHH
Confidence 345555555555433
No 100
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=67.16 E-value=27 Score=30.13 Aligned_cols=32 Identities=34% Similarity=0.427 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019604 177 EDEIEKIGKLNWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 177 E~EiEr~~r~n~ELEErlrql~~E~q~Wq~~A 208 (338)
-+|+|-++.+..||++|.++|+.||...+..+
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46777777888899999999999999887765
No 101
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=66.90 E-value=3.6 Score=41.36 Aligned_cols=47 Identities=28% Similarity=0.558 Sum_probs=30.3
Q ss_pred CCcccccccccc-------------------cCcceEEeCCCCcccchhHH-hc---C--------CCCCCCCCCCCc
Q 019604 285 SGGSRLCRNCRK-------------------EESCVLLLPCRHLCLCTVCG-SS---L--------HTCPVCKSPKTV 331 (338)
Q Consensus 285 ~~~~~~C~vC~~-------------------~~~~vvLlPCrHlclC~~C~-~~---l--------~~CPvCR~~i~~ 331 (338)
+...+.|.+|+. .+....|-||||+|.=+.-. +. + ..||.|-....+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 345678999886 34555678999996432211 11 1 589999877653
No 102
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.62 E-value=47 Score=36.16 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=12.4
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
+.++++|.+|+++.++..|-..++.+|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544443333333333
No 103
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.42 E-value=95 Score=28.02 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 122 NDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 122 ~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
+.++++-+.+..|+. .++..+++|....+. +++.| ..+-.+|-+.|...+.- ..+|..++.+|..|+
T Consensus 39 e~~~~~n~~~~~e~~-~L~~d~e~L~~q~~~--ek~~r-------~~~e~~l~~~Ed~~~~e---~k~L~~~v~~Le~e~ 105 (158)
T PF09744_consen 39 ESLASRNQEHEVELE-LLREDNEQLETQYER--EKELR-------KQAEEELLELEDQWRQE---RKDLQSQVEQLEEEN 105 (158)
T ss_pred HHHHHhhhhhhhHHH-HHHHHHHHHHHHHHH--HHHHH-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 456667777777777 445566666655443 33322 11113444445444443 335777777777777
Q ss_pred HHHHHHHHh
Q 019604 202 QIWRDLAQS 210 (338)
Q Consensus 202 q~Wq~~Ak~ 210 (338)
..-+.+++.
T Consensus 106 r~L~~~~~~ 114 (158)
T PF09744_consen 106 RQLELKLKN 114 (158)
T ss_pred HHHHHHhhh
Confidence 766666554
No 104
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=66.32 E-value=1.8e+02 Score=30.81 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=6.3
Q ss_pred ccCcceEEeCCC
Q 019604 296 KEESCVLLLPCR 307 (338)
Q Consensus 296 ~~~~~vvLlPCr 307 (338)
+....+|++.|.
T Consensus 241 ddtp~~v~ls~f 252 (514)
T TIGR03319 241 DDTPEAVILSGF 252 (514)
T ss_pred cCCCCeEEecCC
Confidence 344555555554
No 105
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=66.02 E-value=56 Score=28.44 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHhhhhHHHH
Q 019604 129 QEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGV----MKKLKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 129 ~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v----~~rLReKE~EiEr~~r~n~ELE 191 (338)
++...++|.. .+++.++..+.+.|. -|.+.+..+ ..+.-..|..|..+.+|.+|||
T Consensus 80 ~~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 80 QQRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455555 556666666666655 223333333 4444567777777777777765
No 106
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=65.83 E-value=24 Score=35.03 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=25.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
.+-|++-+.++|.+|.+++-.|+.|.+-.+.+
T Consensus 253 l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888889999999998888888766544
No 107
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=65.79 E-value=1.1e+02 Score=36.07 Aligned_cols=89 Identities=25% Similarity=0.349 Sum_probs=50.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 019604 134 DIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEA 213 (338)
Q Consensus 134 EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA 213 (338)
++|.=+....++++....+.++.+ ++|+--=-.-+..++.+.++++.++.+++..|++.++-+..+++.-+. ...
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~~q-~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~----~~~ 539 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQREQ-KALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAAD----SLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh
Confidence 344445555566666666665522 222222122334577777777777777777777777666555443322 234
Q ss_pred HHHHHHhhHHHHHH
Q 019604 214 TANALRTNLEQVLA 227 (338)
Q Consensus 214 ~a~~Lr~~LeQ~l~ 227 (338)
-++.||.+|+....
T Consensus 540 kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 540 KVNSLRKQLEEAEL 553 (1317)
T ss_pred hHHHHHHHHHHhhh
Confidence 46777777776543
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.37 E-value=1.4e+02 Score=31.22 Aligned_cols=65 Identities=23% Similarity=0.306 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 019604 126 FQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVR-----IIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERV 194 (338)
Q Consensus 126 ~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r-----~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErl 194 (338)
++++.|..+.|+=+ ++++..|++.-+++.+ .++.|--+++..+|.+||.||.++...|-.|.|+.
T Consensus 2 ~~~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 2 APLYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred chhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777766533 3444455544444432 23444455677889999999999888887776643
No 109
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=65.13 E-value=77 Score=34.22 Aligned_cols=37 Identities=32% Similarity=0.360 Sum_probs=32.4
Q ss_pred HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 168 GVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 168 ~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
++--||.+.+.|-|.+++.|+.|..||.-+..|++.-
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 3446889999999999999999999999999999854
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.83 E-value=1.8e+02 Score=32.20 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 190 LEERVKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 190 LEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
+..|.++|+.|...-+.-.+..|.....|...++++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555565555555555433
No 111
>PRK11637 AmiB activator; Provisional
Probab=64.81 E-value=1.7e+02 Score=29.81 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=12.8
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
++.+.+.+|+.+.++..+|++.+.++..+
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 112
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=63.89 E-value=81 Score=32.44 Aligned_cols=84 Identities=11% Similarity=0.170 Sum_probs=47.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 120 LGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 120 l~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
+|.++..+-++|..+...-+..-..+|+....+.-+.+.. +.........++...|.++....+...+|++++..+..
T Consensus 50 ~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~--l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~ 127 (390)
T PRK10920 50 AGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQE--LEGILKQQAKALDQANRQQAALAKQLDELQQKVATISG 127 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555655545555444443333333444433333322222 22333445566777788888888888889999888764
Q ss_pred HH-HHHH
Q 019604 200 EN-QIWR 205 (338)
Q Consensus 200 E~-q~Wq 205 (338)
-. ..|.
T Consensus 128 ~~~~dWl 134 (390)
T PRK10920 128 SDAKTWL 134 (390)
T ss_pred CChhhHH
Confidence 44 5664
No 113
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=63.69 E-value=2.1e+02 Score=31.87 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHH------HHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHH
Q 019604 127 QIQEQQFDIDRL------ISQHMEKVRMEV----------EERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWAL 190 (338)
Q Consensus 127 ql~qQ~~EID~~------i~~q~ErLR~~L----------~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~EL 190 (338)
.|..|-.|++++ -+.+.|.||+.| +|..||..-.+=..=+.-+..-..+-.+++..++.+..+|
T Consensus 95 rLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~L 174 (739)
T PF07111_consen 95 RLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEEL 174 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666788877 455566666422 2222222222222222222333344556667777777777
Q ss_pred HHHHHHHHH
Q 019604 191 EERVKSLCI 199 (338)
Q Consensus 191 EErlrql~~ 199 (338)
++.|..+..
T Consensus 175 e~~L~~le~ 183 (739)
T PF07111_consen 175 EKSLESLET 183 (739)
T ss_pred HHHHHHHHH
Confidence 777766655
No 114
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=62.77 E-value=3 Score=30.72 Aligned_cols=24 Identities=29% Similarity=0.933 Sum_probs=12.1
Q ss_pred CCCCcccchhHHhcC-----CCCCCCCCCC
Q 019604 305 PCRHLCLCTVCGSSL-----HTCPVCKSPK 329 (338)
Q Consensus 305 PCrHlclC~~C~~~l-----~~CPvCR~~i 329 (338)
||++. +|..|...+ ..||.||.+.
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45666 999997664 5899999864
No 115
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=61.85 E-value=51 Score=27.29 Aligned_cols=37 Identities=30% Similarity=0.647 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHh---hHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 164 VIEEGVMKKLKA---KEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 164 avE~~v~~rLRe---KE~EiEr~~r~n~ELEErlrql~~E 200 (338)
++|+.+.+|+-. -|+|||+++.-.++|++++.+++..
T Consensus 28 lmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 28 LMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666443 5899999999999999999998864
No 116
>smart00338 BRLZ basic region leucin zipper.
Probab=61.20 E-value=67 Score=24.01 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=28.2
Q ss_pred HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 019604 168 GVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRT 220 (338)
Q Consensus 168 ~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~ 220 (338)
.++.+-|+|..+. ..+||.++..|..|+..++.....-+.-...|+.
T Consensus 15 ~aA~~~R~rKk~~------~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 15 EAARRSRERKKAE------IEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555553332 2359999999999999886655444443444333
No 117
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=60.94 E-value=37 Score=31.96 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHhhhhHHHH
Q 019604 143 MEKVRMEVEERKKRQVRIIMDVIEE--GVMKKLKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 143 ~ErLR~~L~E~R~rq~r~ll~avE~--~v~~rLReKE~EiEr~~r~n~ELE 191 (338)
.++-|..|.|+||.-. -.++++ ..-+.+-.|++||.++...|.+|.
T Consensus 105 se~YWk~lAE~RR~AL---~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~ 152 (200)
T PF07412_consen 105 SENYWKELAEERRKAL---EEALEENEKLHKEIEQKDEEIAKLKEENEELK 152 (200)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888886433 333332 233344455555555444433333
No 118
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=60.63 E-value=3.6 Score=30.49 Aligned_cols=42 Identities=24% Similarity=0.746 Sum_probs=24.3
Q ss_pred ccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceE
Q 019604 290 LCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSV 333 (338)
Q Consensus 290 ~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V 333 (338)
-|+.|+-...+.+ -|.-.-+|-.|-..| ..||||..+....+
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 4888988777765 477444999999987 79999998876554
No 119
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=60.58 E-value=86 Score=25.09 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 124 MSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEK 182 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr 182 (338)
....++.+...+-.-|..+.++|+..|++.++ .|+.-++..-..++...++.+++
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~----~ll~~l~~~~~~~~~~l~~q~~~ 83 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRKK----QLLEDLEEQKENKLKVLEQQLES 83 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666677777777776663 34445555444444444444444
No 120
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=59.78 E-value=1.7e+02 Score=28.08 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=53.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 119 FLGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 119 ~l~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
.|.+-|+.+|++= ++|..++.+|...|...+.+..... +-+....-.-|++.-..|+.+.+.+..|+-.+..+.
T Consensus 8 ~LNdRla~YIekV-----r~LE~~N~~Le~~i~~~~~~~~~~~-~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 8 SLNDRLASYIEKV-----RFLEQENKRLESEIEELREKKGEEV-SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHhcccccC-cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 3555566665432 4566777777777777776642221 333444445555566666666666666776666666
Q ss_pred HHHHHHHHHHHh-------hHHHHHHHHhhHHHHH
Q 019604 199 IENQIWRDLAQS-------NEATANALRTNLEQVL 226 (338)
Q Consensus 199 ~E~q~Wq~~Ak~-------nEA~a~~Lr~~LeQ~l 226 (338)
.|...++.+-.. -+.....||..|++..
T Consensus 82 ~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~ 116 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKDLEEELESLRKDLDEET 116 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 666666544321 2233445555555443
No 121
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=59.50 E-value=75 Score=35.47 Aligned_cols=85 Identities=22% Similarity=0.319 Sum_probs=60.4
Q ss_pred HHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019604 139 ISQHMEKVRMEVEERKKR------QVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNE 212 (338)
Q Consensus 139 i~~q~ErLR~~L~E~R~r------q~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nE 212 (338)
+..+++++-.+|+.+|+| |...|...+++...--+++--+-+|++++.-.||+.--+++..=..+=..+...+|
T Consensus 168 l~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E 247 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIE 247 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345688888888888886 67778888887766666777777778777777777666666655555555554455
Q ss_pred HHHHHHHhhHHHHHH
Q 019604 213 ATANALRTNLEQVLA 227 (338)
Q Consensus 213 A~a~~Lr~~LeQ~l~ 227 (338)
. ||..++|+..
T Consensus 248 ~----Lr~e~~qL~~ 258 (916)
T KOG0249|consen 248 D----LRGELDQLRR 258 (916)
T ss_pred H----HHHHHHHHHH
Confidence 4 8888888875
No 122
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=59.41 E-value=5.7 Score=31.67 Aligned_cols=28 Identities=29% Similarity=0.707 Sum_probs=20.7
Q ss_pred ccccccccc--CcceEEeCCCCcccchhHHh
Q 019604 289 RLCRNCRKE--ESCVLLLPCRHLCLCTVCGS 317 (338)
Q Consensus 289 ~~C~vC~~~--~~~vvLlPCrHlclC~~C~~ 317 (338)
..|.+|... ...+++.||+|. +-..|..
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 459999874 467788899987 6666653
No 123
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.42 E-value=33 Score=28.74 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=28.3
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRD 206 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~ 206 (338)
.++++...+++.+..+|.+|+.+-++|..|...|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 366777888888888888888888888888888865
No 124
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=57.93 E-value=7 Score=32.03 Aligned_cols=40 Identities=23% Similarity=0.605 Sum_probs=26.3
Q ss_pred cccccccc--CcceEEeCCCCcccchhHHhc-------CCCCCCCCCCCC
Q 019604 290 LCRNCRKE--ESCVLLLPCRHLCLCTVCGSS-------LHTCPVCKSPKT 330 (338)
Q Consensus 290 ~C~vC~~~--~~~vvLlPCrHlclC~~C~~~-------l~~CPvCR~~i~ 330 (338)
.|..|.-. .-.+++--|+|. |=.-|... -..||+||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34445442 223456679998 88888655 279999998753
No 125
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=57.61 E-value=4.7 Score=35.76 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=33.7
Q ss_pred ccccccccccCcceEE-eC---CCCcccchhHHhcC-------CCCCCCCCCCCceE
Q 019604 288 SRLCRNCRKEESCVLL-LP---CRHLCLCTVCGSSL-------HTCPVCKSPKTVSV 333 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvL-lP---CrHlclC~~C~~~l-------~~CPvCR~~i~~~V 333 (338)
.-.|-||.+...+--| .| || .-+|..|...+ .+||+|+..+.++-
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4568889887665544 34 55 66999998875 79999999887764
No 126
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=57.57 E-value=1.5e+02 Score=27.84 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=44.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHH---HHHHHHHHHhhHHHHHHHhhhh
Q 019604 120 LGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKK---------RQVRIIMDVI---EEGVMKKLKAKEDEIEKIGKLN 187 (338)
Q Consensus 120 l~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~---------rq~r~ll~av---E~~v~~rLReKE~EiEr~~r~n 187 (338)
|-.++-.+||.|-.||-. |+.-+.||...=+|.|. +-.+.|-.-. -+.++.-+| .|+..-.+|.
T Consensus 42 lm~evNrrlQ~hl~EIR~-LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr---~eV~~Y~~KL 117 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRG-LKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMR---QEVAQYQQKL 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHH---HHHHHHHHHH
Confidence 445677788888877744 34444444444333331 0011111111 112222222 3455555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 019604 188 WALEERVKSLCIENQIWRDLAQS 210 (338)
Q Consensus 188 ~ELEErlrql~~E~q~Wq~~Ak~ 210 (338)
.+||.+...|..||..-+.+..+
T Consensus 118 ~eLE~kq~~L~rEN~eLKElcl~ 140 (195)
T PF10226_consen 118 KELEDKQEELIRENLELKELCLY 140 (195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 77777777777777777665533
No 127
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=57.28 E-value=1e+02 Score=24.83 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=49.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHhhHH
Q 019604 140 SQHMEKVRMEVEERKKRQVRIIMDVIE--EGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWR----DLAQSNEA 213 (338)
Q Consensus 140 ~~q~ErLR~~L~E~R~rq~r~ll~avE--~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq----~~Ak~nEA 213 (338)
+....+|+.-+.+-++-|...+ .+.. ..+..+|.. .++.++++..++..+|+.|..++..-. ...+...+
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l-~~~~~~~~~~~~l~~---~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~ 89 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELL-TPPDADKELREKLER---LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKA 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHH
Confidence 4444555666666666665544 3332 334444444 445555566678888888877654211 13345566
Q ss_pred HHHHHHhhHHHHHHH
Q 019604 214 TANALRTNLEQVLAS 228 (338)
Q Consensus 214 ~a~~Lr~~LeQ~l~~ 228 (338)
....|...+..++..
T Consensus 90 q~~~L~~~f~~~m~~ 104 (117)
T smart00503 90 QTEKLRKKFKEVMNE 104 (117)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777654
No 128
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=56.91 E-value=1.8e+02 Score=30.96 Aligned_cols=59 Identities=29% Similarity=0.429 Sum_probs=39.6
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHH----HHH--HHH---------HHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKS----LCI--ENQ---------IWRDLAQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrq----l~~--E~q---------~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
+-|-+||+||+|+....-|||.-... |.. |.+ .+|..-+.|.+----|++.|+-+++++
T Consensus 453 k~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 453 KTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 56888999999999988888853311 111 111 345555666677777888888877653
No 129
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.33 E-value=2.1e+02 Score=28.21 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 125 SFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 125 ~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
...|++...|++..=+...+.+|..|.+.. .-=....+.|.+.+.+++...-...++.++..++..|-+.+
T Consensus 193 ~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~---------~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 193 LENLKQLVEEIESCDQEELEALRQELAEQK---------EEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH----hhHHHHHHHHhhHHHH
Q 019604 205 RDLAQ----SNEATANALRTNLEQV 225 (338)
Q Consensus 205 q~~Ak----~nEA~a~~Lr~~LeQ~ 225 (338)
..+-. ....-+..|++.++.+
T Consensus 264 ~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 264 EKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
No 130
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=55.95 E-value=1.1e+02 Score=24.80 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=25.5
Q ss_pred HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 168 GVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 168 ~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
-..++|+.|++||++.+....-|..+|......+-
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Lnk 43 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNK 43 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999977777777766665554443
No 131
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.47 E-value=2.3e+02 Score=28.46 Aligned_cols=103 Identities=22% Similarity=0.273 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHhhHHHHHHHh--------hhh
Q 019604 125 SFQIQEQQFDIDRLI---SQHMEKVRMEVEERKKRQVRIIMDV--IEE----GVMKKLKAKEDEIEKIG--------KLN 187 (338)
Q Consensus 125 ~~ql~qQ~~EID~~i---~~q~ErLR~~L~E~R~rq~r~ll~a--vE~----~v~~rLReKE~EiEr~~--------r~n 187 (338)
...|+++..-+...+ +..+..|...++..|+..++.-..+ -|. ...+||.....|-+.+. ...
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~lt 108 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLT 108 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655444433 4445555556666666555433322 122 33455555555544442 234
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 188 WALEERVKSLCIENQ-IWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 188 ~ELEErlrql~~E~q-~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
..|.-+|.+|..|-- .=..+.+..|.+++-|+..|+.+-.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 557778888888765 4455667788999999999998854
No 132
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=55.16 E-value=1.3e+02 Score=25.47 Aligned_cols=81 Identities=19% Similarity=0.291 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHHHhhHHH
Q 019604 142 HMEKVRMEVEERKKRQVRIIMDVI--EEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWR-----DLAQSNEAT 214 (338)
Q Consensus 142 q~ErLR~~L~E~R~rq~r~ll~av--E~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq-----~~Ak~nEA~ 214 (338)
...+|+..+..-++-|. .++++. +..+.++|...-.++ +++..++..+|+.|..++..-. ...+.....
T Consensus 14 ~i~~i~~~v~~l~~l~~-~~~t~~~~~~~~~~~l~~~~~~~---~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q 89 (151)
T cd00179 14 NIDKISEDVEELQKLHS-QLLTAPDADPELKQELESLVQEI---KKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQ 89 (151)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 33444444444444442 345555 344555544444444 4444456677777665543211 023344555
Q ss_pred HHHHHhhHHHHH
Q 019604 215 ANALRTNLEQVL 226 (338)
Q Consensus 215 a~~Lr~~LeQ~l 226 (338)
...|...+..++
T Consensus 90 ~~~L~~~f~~~m 101 (151)
T cd00179 90 HSGLSKKFVEVM 101 (151)
T ss_pred HHHHHHHHHHHH
Confidence 555666555554
No 133
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=54.90 E-value=1.2e+02 Score=32.53 Aligned_cols=77 Identities=22% Similarity=0.161 Sum_probs=36.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 019604 135 IDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEAT 214 (338)
Q Consensus 135 ID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~ 214 (338)
+|.||++- |++.--+|+.+|-... |++.++++.|+.++...|+-+|+....-.++-...-+.-|+-
T Consensus 27 e~ef~rl~--k~fed~~ek~~r~~ae------------~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d 92 (604)
T KOG3564|consen 27 EDEFIRLR--KDFEDFEEKWKRTDAE------------LGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEAD 92 (604)
T ss_pred HHHHHHHH--HHHHHHHHHHhhhhHH------------HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhh
Confidence 56665543 4555566666655432 344555555555555555555554433333333222333444
Q ss_pred HHHHHhhHHHH
Q 019604 215 ANALRTNLEQV 225 (338)
Q Consensus 215 a~~Lr~~LeQ~ 225 (338)
-+.|-...+++
T Consensus 93 ~~~~E~~i~~i 103 (604)
T KOG3564|consen 93 CEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 134
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.72 E-value=1.9e+02 Score=27.15 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=15.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQI 203 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~ 203 (338)
.++|.+++......++.+++.+.+|++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555566666666665553
No 135
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.51 E-value=1.7e+02 Score=32.43 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHH------HHHH----------HHHHHHHHHHHHHhhHHHHH
Q 019604 124 MSFQIQEQQFDIDRL------ISQHMEKVRMEVEERKKRQ------VRII----------MDVIEEGVMKKLKAKEDEIE 181 (338)
Q Consensus 124 l~~ql~qQ~~EID~~------i~~q~ErLR~~L~E~R~rq------~r~l----------l~avE~~v~~rLReKE~EiE 181 (338)
|..++++|..||+.+ |+...++|..-+++.+.+| +..+ ++..|+...+-|+.-..++.
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQ 649 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHhhHHHHHHHHhHhhhh
Q 019604 182 KIGKLNWALEERVKSLCIENQIWRDLAQSN-EATANALRTNLEQVLASAAAQVKE 235 (338)
Q Consensus 182 r~~r~n~ELEErlrql~~E~q~Wq~~Ak~n-EA~a~~Lr~~LeQ~l~~~~~~~~~ 235 (338)
.+..+..++..++.....-.+ |+.-.+.+ ...-..=+.++.++|.+......+
T Consensus 650 ~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~ 703 (717)
T PF10168_consen 650 DLKASIEQLKKKLDYQQRQIE-SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDE 703 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccccccCCCccCCHHHHHHHHHHHHHHHHHHHH
No 136
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=54.48 E-value=3.1e+02 Score=29.64 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=6.2
Q ss_pred cCCcccccccccc
Q 019604 11 IFPPQLLANREII 23 (338)
Q Consensus 11 ~~~~~~~~~r~~~ 23 (338)
|-|...-+.||-|
T Consensus 28 lt~~~~ps~~DWI 40 (546)
T PF07888_consen 28 LTPGFHPSSKDWI 40 (546)
T ss_pred cCCCCCCCCCCee
Confidence 3333444555654
No 137
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=54.47 E-value=81 Score=22.90 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=16.1
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
..+.+.++..+...|..|...+..|..|
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555566666666666666666544
No 138
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=53.86 E-value=45 Score=27.91 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=23.7
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
+++.+.+.|++++..+|.+|+++++.|.-....=
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyi 67 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAI 67 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 4556677777777888888888888776533333
No 139
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=53.57 E-value=1.3e+02 Score=32.84 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019604 127 QIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWR 205 (338)
Q Consensus 127 ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq 205 (338)
.++||..++.+=|....+++-....|.|. +.+.+...+ ..+..||-..|.+++........|++.+..|..-...|.
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 45565666665565555566666666633 344443333 446677788888999999999999999988887777885
No 140
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=53.56 E-value=24 Score=28.73 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
||.-.+.||++...+..|+++|||.|...-
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk 31 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQK 31 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999887643
No 141
>PRK04863 mukB cell division protein MukB; Provisional
Probab=53.50 E-value=3.4e+02 Score=32.79 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=13.3
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
.+.+++++.+..+..++++++..+..+.+.|
T Consensus 365 ee~eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444
No 142
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=53.02 E-value=72 Score=24.25 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q 019604 139 ISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKS 196 (338)
Q Consensus 139 i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrq 196 (338)
|.-...+++..|...-+|....|+ .-.+...|.+.+.+.|.||...|+|
T Consensus 10 ip~~~~~~W~~L~~~l~rY~~vL~---------~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 10 IPDEKIRLWDALENFLKRYNKVLL---------DRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666666666666664332 2245677889999999999988876
No 143
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.85 E-value=4.5e+02 Score=31.84 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
..++.....+++.+..+..+.++.+.++..+...+.......+.-...|+.+|...
T Consensus 347 q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLael 402 (1486)
T PRK04863 347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADY 402 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666677777777777777766666777777777666543
No 144
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.83 E-value=1.5e+02 Score=31.00 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=39.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhH
Q 019604 137 RLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNW 188 (338)
Q Consensus 137 ~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ 188 (338)
.|--.|.|||--.|.|.-++|+... +-+-..+++.+|..+.|.+|++-+..
T Consensus 126 ~~~~aq~erlvgeiaenerqhavem-aelsekia~emr~lede~~r~~mrtk 176 (637)
T KOG4421|consen 126 IFEEAQKERLVGEIAENERQHAVEM-AELSEKIADEMRDLEDETERIAMRTK 176 (637)
T ss_pred HHHHHHhhHHHHHHHhhhHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445789999999999999998655 34556778889999999999877554
No 145
>PLN02189 cellulose synthase
Probab=52.75 E-value=9.2 Score=43.63 Aligned_cols=44 Identities=25% Similarity=0.659 Sum_probs=34.0
Q ss_pred ccccccccccc----CcceEEeCCC--CcccchhHHhc-----CCCCCCCCCCCC
Q 019604 287 GSRLCRNCRKE----ESCVLLLPCR--HLCLCTVCGSS-----LHTCPVCKSPKT 330 (338)
Q Consensus 287 ~~~~C~vC~~~----~~~vvLlPCr--HlclC~~C~~~-----l~~CPvCR~~i~ 330 (338)
+...|.||.+. ...-+|+.|. ...+|..|..- -+.||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999997 5566888995 33489999865 379999998765
No 146
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=52.70 E-value=78 Score=30.67 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019604 190 LEERVKSLCIENQIWRDL 207 (338)
Q Consensus 190 LEErlrql~~E~q~Wq~~ 207 (338)
...|+..|+.|++..+..
T Consensus 220 ~~~r~~~leken~~lr~~ 237 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQ 237 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444566666666665444
No 147
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=52.51 E-value=69 Score=37.19 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=14.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH
Q 019604 182 KIGKLNWALEERVKSLCIENQI 203 (338)
Q Consensus 182 r~~r~n~ELEErlrql~~E~q~ 203 (338)
....++.+|++.++++.++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777666543
No 148
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=52.26 E-value=72 Score=29.45 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=4.6
Q ss_pred ccccccCccc
Q 019604 60 LPTVVYGSSI 69 (338)
Q Consensus 60 ~~~~~~~~~~ 69 (338)
|||-+.+-.+
T Consensus 48 I~~~~iNDdy 57 (176)
T PF12999_consen 48 IPFSQINDDY 57 (176)
T ss_pred ecHHHccCcc
Confidence 5654444333
No 149
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.24 E-value=3.5e+02 Score=30.21 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 019604 129 QEQQFDIDRLIS 140 (338)
Q Consensus 129 ~qQ~~EID~~i~ 140 (338)
.....+++.+|.
T Consensus 507 ~~~~~~~~~li~ 518 (771)
T TIGR01069 507 GEFKEEINVLIE 518 (771)
T ss_pred HhhHHHHHHHHH
Confidence 444556666663
No 150
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.97 E-value=2.5e+02 Score=31.41 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 019604 128 IQEQQFDIDRLIS 140 (338)
Q Consensus 128 l~qQ~~EID~~i~ 140 (338)
+..+..+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 4556667777774
No 151
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=51.55 E-value=1.9e+02 Score=28.43 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=20.5
Q ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 169 VMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 169 v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
.-++|..++.|++. +++.+++.+.|...|+.+
T Consensus 198 ~~r~l~~~~~ELe~-------~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 198 KDRKLELKKEELEE-------LEEELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34556666666666 666777777777776554
No 152
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=51.28 E-value=1.2e+02 Score=26.49 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 019604 122 NDMSFQIQEQQFDIDRLIS 140 (338)
Q Consensus 122 ~~l~~ql~qQ~~EID~~i~ 140 (338)
..++..|=+.-..||.||.
T Consensus 72 ~elA~dIi~kakqIe~LId 90 (144)
T PF11221_consen 72 KELATDIIRKAKQIEYLID 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666777887775
No 153
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.20 E-value=3.6e+02 Score=29.44 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHHHHHH
Q 019604 132 QFDIDRLISQHMEKVRM 148 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~ 148 (338)
...++++++.+-+||+.
T Consensus 110 ne~Ls~L~~EqEerL~E 126 (617)
T PF15070_consen 110 NEQLSRLNQEQEERLAE 126 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667777777666653
No 154
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=51.08 E-value=93 Score=27.73 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=41.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
+-++.+.+....|+..+.-+..|...++.++++-+.-+..|+..|...+...
T Consensus 40 ~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 40 EKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345555555567777777888888899999999999999999999998764
No 155
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.30 E-value=1e+02 Score=22.93 Aligned_cols=18 Identities=39% Similarity=0.446 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019604 190 LEERVKSLCIENQIWRDL 207 (338)
Q Consensus 190 LEErlrql~~E~q~Wq~~ 207 (338)
|++++..|..|+..++..
T Consensus 31 Le~~~~~L~~en~~L~~~ 48 (64)
T PF00170_consen 31 LEEKVEELESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777776543
No 156
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=50.25 E-value=1.8e+02 Score=25.78 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=21.0
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 175 AKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 175 eKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
.+++++.......+++.+.++.+..+.+.=+..+.........++.+++++..
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEE 179 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444433333333333333444444444444443
No 157
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=49.92 E-value=2.7e+02 Score=29.65 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.6
Q ss_pred cccccccccCcc
Q 019604 289 RLCRNCRKEESC 300 (338)
Q Consensus 289 ~~C~vC~~~~~~ 300 (338)
..|+||.....+
T Consensus 293 lyC~vCnKsFKs 304 (508)
T KOG0717|consen 293 LYCVVCNKSFKS 304 (508)
T ss_pred eEEeeccccccc
Confidence 789999765543
No 158
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.91 E-value=2e+02 Score=32.05 Aligned_cols=12 Identities=0% Similarity=0.199 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 019604 126 FQIQEQQFDIDR 137 (338)
Q Consensus 126 ~ql~qQ~~EID~ 137 (338)
..|++++.+++.
T Consensus 518 ~~L~~~~~~~e~ 529 (771)
T TIGR01069 518 EKLSALEKELEQ 529 (771)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 159
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.90 E-value=2.1e+02 Score=26.42 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=25.4
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLAS 228 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~ 228 (338)
++++|.+|..+.++..+|++....+..+. ....+.+..|++..+.+-..
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~k-------e~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKK-------EAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555555555544444333 33345555565555555443
No 160
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.24 E-value=1.1e+02 Score=24.86 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=22.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~E~q~Wq~~A 208 (338)
.|++.+.--..+|+..-.+|..|-+.|+.+-
T Consensus 39 ~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 39 QEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455678888899999999997763
No 161
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.08 E-value=2.1e+02 Score=32.53 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhH--HHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 131 QQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEE-GVMKKLKAKE--DEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 131 Q~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~-~v~~rLReKE--~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
.+.|+.+.=|.+-||=-++.+|+-+++--.|=+-+|+ ..+.+-||-| .|||+......||| |.|+++.|.
T Consensus 343 eree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE-kqRqlewEr 415 (1118)
T KOG1029|consen 343 EREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE-KQRQLEWER 415 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3345555555555555555555544444444444443 2222222211 23444444444554 335555553
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=49.04 E-value=7.1 Score=39.64 Aligned_cols=41 Identities=22% Similarity=0.679 Sum_probs=30.6
Q ss_pred cccccccc----CcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 290 LCRNCRKE----ESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 290 ~C~vC~~~----~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
.|..|.+. ..+..=.|||-. +|..|...+ ..||.||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 49999873 455555666666 899998875 799999987654
No 163
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.98 E-value=6.3 Score=35.71 Aligned_cols=26 Identities=35% Similarity=0.956 Sum_probs=22.1
Q ss_pred ccchhHHhc-CCCCCCCCCCCCceEEE
Q 019604 310 CLCTVCGSS-LHTCPVCKSPKTVSVHV 335 (338)
Q Consensus 310 clC~~C~~~-l~~CPvCR~~i~~~V~V 335 (338)
-+|..|... +..||.|..+|.+.-+|
T Consensus 29 ~fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 29 KFCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHHhhHHHHHHCcCCCCCCCCceec
Confidence 388999887 59999999999987665
No 164
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=48.38 E-value=2.4e+02 Score=29.24 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 019604 120 LGNDMSFQIQEQQFDID---RLISQHMEKVRMEVEERK-KRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 120 l~~~l~~ql~qQ~~EID---~~i~~q~ErLR~~L~E~R-~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlr 195 (338)
||.++.+..++|...+- ++++.|...+..+.+.++ -++...++++.+ ..|+..|-+++--.+...||+.+++
T Consensus 46 LGagg~~f~QqQ~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q----~el~~l~~~~~~~~~ql~e~Q~~v~ 121 (391)
T COG2959 46 LGAGGYYFGQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQ----AELDRLERQLETLQKQLSELQKKVA 121 (391)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55666777777777654 455666665555444433 133433444433 3445588888888899999999998
Q ss_pred HHHHH-HHHHH
Q 019604 196 SLCIE-NQIWR 205 (338)
Q Consensus 196 ql~~E-~q~Wq 205 (338)
.+..- .+.|.
T Consensus 122 ~is~~~~~dWl 132 (391)
T COG2959 122 TISGSDRKDWL 132 (391)
T ss_pred HhccCChhhHH
Confidence 88844 45664
No 165
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.84 E-value=6.1 Score=26.68 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCceEE
Q 019604 319 LHTCPVCKSPKTVSVH 334 (338)
Q Consensus 319 l~~CPvCR~~i~~~V~ 334 (338)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 3699999998776654
No 166
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=47.80 E-value=3.8 Score=41.02 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=35.5
Q ss_pred cccccccccccCcceEE-eCCCCcccchhHHhc----CCCCCCCCCCCCceE
Q 019604 287 GSRLCRNCRKEESCVLL-LPCRHLCLCTVCGSS----LHTCPVCKSPKTVSV 333 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvL-lPCrHlclC~~C~~~----l~~CPvCR~~i~~~V 333 (338)
....|.+|..=-.+... .=|-|- ||+.|--. ...||.|...|.++.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 45789999886655443 348898 99999766 389999999888764
No 167
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=47.64 E-value=1.5e+02 Score=32.30 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=20.4
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~A 208 (338)
+|.+.-.+.+.+.+.|++.++||..++...+-|+...
T Consensus 102 qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 102 QLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555556666666666666666665544
No 168
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=47.45 E-value=1.2e+02 Score=27.38 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 019604 145 KVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERV 194 (338)
Q Consensus 145 rLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErl 194 (338)
.|...|-+-|=.|+|.. +..-+.+.+++|.++++++++...+.++.|
T Consensus 115 NmhhllNeyRPhQARet---Li~~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 115 NMHHLLNEYRPHQARET---LIMMMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999954 455566888999999999988877777665
No 169
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=47.34 E-value=21 Score=31.93 Aligned_cols=75 Identities=20% Similarity=0.472 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 126 FQIQEQQFDIDRLISQH-----MEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 126 ~ql~qQ~~EID~~i~~q-----~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
..++.+=.+|-..|..| .-+|+..|+.+|+||.- +|. ...+| +.+..|
T Consensus 45 ~~le~~P~~v~~WI~~hm~p~l~nklkQaIRArRKRhFN-----AE~-------------qhTrK---------KSIDLe 97 (150)
T PRK05097 45 LKLENEPVKVLEWIDKHMNPELVNRMKQTIRARRKRHFN-----AEH-------------QHTRK---------KSIDLE 97 (150)
T ss_pred HHhccCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHccCC-----ccc-------------ccccc---------cCcccc
Confidence 34566666777777665 56888888888888872 221 11111 345555
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 201 NQIWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 201 ~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
...|+.++..-.-.-.+|-.++.+++.
T Consensus 98 y~vW~rLs~~a~~~~~TLSetI~~li~ 124 (150)
T PRK05097 98 YRVWQRLAGLAQRRGKTLSETIVQLIE 124 (150)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 556666666666656666666666654
No 170
>PRK00106 hypothetical protein; Provisional
Probab=47.20 E-value=4e+02 Score=28.71 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=4.3
Q ss_pred cCcceEEeCC
Q 019604 297 EESCVLLLPC 306 (338)
Q Consensus 297 ~~~~vvLlPC 306 (338)
-...+|++.|
T Consensus 263 dtp~~v~lS~ 272 (535)
T PRK00106 263 DTPEVVVLSG 272 (535)
T ss_pred CCCCeEEEeC
Confidence 3344444444
No 171
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.86 E-value=2.8e+02 Score=26.90 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=53.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 118 SFLGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 118 s~l~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
.++++-....+..|+.-||.|++.--.++-..+.+-=++-++.. --+..+..-|++-+.|+.+.+....|-+++.-.+
T Consensus 14 l~l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~--~e~e~l~~~l~etene~~~~neL~~ek~~~q~~i 91 (246)
T KOG4657|consen 14 LSLGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQ--VELENLKADLRETENELVKVNELKTEKEARQMGI 91 (246)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999998763333333333322222111 1122344557778888877777666666666666
Q ss_pred HHHHHHHHHH
Q 019604 198 CIENQIWRDL 207 (338)
Q Consensus 198 ~~E~q~Wq~~ 207 (338)
..|.-+-|..
T Consensus 92 eqeik~~q~e 101 (246)
T KOG4657|consen 92 EQEIKATQSE 101 (246)
T ss_pred HHHHHHHHHH
Confidence 6666555553
No 172
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.69 E-value=1.1e+02 Score=27.30 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 019604 195 KSLCIENQIWRDLAQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 195 rql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
+.+..|.-.|++++..-.-+-.+|..++.+++...
T Consensus 92 KSIDLey~VW~rLs~~a~~~g~TLSetI~~li~ea 126 (149)
T COG3120 92 KSIDLEYAVWQRLSGLARRRGKTLSETIVYLIEEA 126 (149)
T ss_pred ccccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 46667778899888888888888888888887543
No 173
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.66 E-value=2e+02 Score=32.64 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=4.0
Q ss_pred Cccccccc
Q 019604 55 TAEAFLPT 62 (338)
Q Consensus 55 ~~~~~~~~ 62 (338)
.|.-++|+
T Consensus 271 lP~E~Vpp 278 (1118)
T KOG1029|consen 271 LPPELVPP 278 (1118)
T ss_pred CChhhcCc
Confidence 44445555
No 174
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.33 E-value=1.5e+02 Score=23.45 Aligned_cols=23 Identities=26% Similarity=0.373 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 019604 185 KLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 185 r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
..|.+|++...+|..|-..|+.+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777788654
No 175
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.21 E-value=1.6e+02 Score=23.91 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019604 133 FDIDRLISQHMEK--VRMEVEERKKRQVRIIMDVIEEGVMKKLKA 175 (338)
Q Consensus 133 ~EID~~i~~q~Er--LR~~L~E~R~rq~r~ll~avE~~v~~rLRe 175 (338)
..+|.++.+..++ +...+++.|.++. .+-..++...+.
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN-----~~sk~I~~~~~~ 65 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERN-----ELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHhhC
Confidence 4666666655332 3344444444433 444445444443
No 176
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=45.97 E-value=4.8 Score=40.15 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=27.6
Q ss_pred ccccccccccC---cceEEeCCCCcccchhHHhc--------C-------------------CCCCCCCCCCC
Q 019604 288 SRLCRNCRKEE---SCVLLLPCRHLCLCTVCGSS--------L-------------------HTCPVCKSPKT 330 (338)
Q Consensus 288 ~~~C~vC~~~~---~~vvLlPCrHlclC~~C~~~--------l-------------------~~CPvCR~~i~ 330 (338)
.+.|+||+-.. -.++.-||.|+ +=..|... + ..|||||-.|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 35677777543 33777899999 43344322 1 47999998875
No 177
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=45.12 E-value=4e+02 Score=28.13 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhHHHH
Q 019604 165 IEEGVMKKLKAKEDEI 180 (338)
Q Consensus 165 vE~~v~~rLReKE~Ei 180 (338)
++....+.|++...|+
T Consensus 342 ~~~~l~~~l~~~~~e~ 357 (582)
T PF09731_consen 342 HEEHLKNELREQAIEL 357 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444444
No 178
>PRK11637 AmiB activator; Provisional
Probab=44.93 E-value=3.5e+02 Score=27.47 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
.|.+.+.+|++..+...++++++.+...
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 179
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.48 E-value=13 Score=36.69 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=33.6
Q ss_pred CCcccccccccccCc----------ceEEeCCCCcccchhHHhc------CCCCCCCCCCCCc
Q 019604 285 SGGSRLCRNCRKEES----------CVLLLPCRHLCLCTVCGSS------LHTCPVCKSPKTV 331 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~----------~vvLlPCrHlclC~~C~~~------l~~CPvCR~~i~~ 331 (338)
.-+...|.||..+-- ++.=+.|+|. +=..|-.. .++||.|...++.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 345678999987532 3445889998 77777665 3899999877653
No 180
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=44.45 E-value=1.6e+02 Score=23.50 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=20.7
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHh
Q 019604 114 PTPFSFLGNDMSFQIQEQQFDIDRLISQH 142 (338)
Q Consensus 114 ~s~~s~l~~~l~~ql~qQ~~EID~~i~~q 142 (338)
.+|.++.++.|+.-|..-++|++++=-.+
T Consensus 5 ~r~s~~p~~~Ls~vl~~LqDE~~hm~~e~ 33 (79)
T PF06657_consen 5 SRPSQSPGEALSEVLKALQDEFGHMKMEH 33 (79)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888988865444
No 181
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=44.30 E-value=1.7e+02 Score=23.77 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=29.5
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
.+.+.||+++......|.++|-+..+....|...
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~ 68 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEA 68 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Confidence 5678888888888888999999999999999666
No 182
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.28 E-value=1.8e+02 Score=29.90 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=35.1
Q ss_pred HHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 019604 134 DIDRLISQHME--KVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSN 211 (338)
Q Consensus 134 EID~~i~~q~E--rLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~n 211 (338)
+||.++.+..+ ++...+++.|.++. .+-..+.+..+.+ ++.+.+..+..+|.++++.++.
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr~~rn-----~~sk~i~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~------------ 87 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQAERN-----ALSKEIGQAKRKG-EDAEALIAEVKELKEEIKALEA------------ 87 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHH------------
Confidence 46666655443 33444444444443 3333333322222 2333333344445555555443
Q ss_pred HHHHHHHHhhHHHHHHHHhH
Q 019604 212 EATANALRTNLEQVLASAAA 231 (338)
Q Consensus 212 EA~a~~Lr~~LeQ~l~~~~~ 231 (338)
....|..+|.+.+....+
T Consensus 88 --~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 88 --ELDELEAELEELLLRIPN 105 (425)
T ss_pred --HHHHHHHHHHHHHHhCCC
Confidence 334445566666665543
No 183
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.25 E-value=8.8 Score=33.96 Aligned_cols=25 Identities=28% Similarity=0.873 Sum_probs=19.5
Q ss_pred cchhHHhc-CCCCCCCCCCCCceEEE
Q 019604 311 LCTVCGSS-LHTCPVCKSPKTVSVHV 335 (338)
Q Consensus 311 lC~~C~~~-l~~CPvCR~~i~~~V~V 335 (338)
+|..|... +..||+|..+|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 66677655 57999999999987655
No 184
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.21 E-value=73 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=17.2
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
+..+..|++.+.++..+|+++.++|..|.+.|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555544
No 185
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.10 E-value=47 Score=31.19 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 179 EIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 179 EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
|+.++.|..++|+++|.++..++..- ......-.+.+|.+|+|+|.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH
Confidence 44445555555665555555544432 11222333455667777775
No 186
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.67 E-value=1.2e+02 Score=31.06 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=10.1
Q ss_pred HHHHHHhhHHHHHHHHhH
Q 019604 214 TANALRTNLEQVLASAAA 231 (338)
Q Consensus 214 ~a~~Lr~~LeQ~l~~~~~ 231 (338)
....|...|.+.+...++
T Consensus 91 ~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 91 ALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 334455566666666544
No 187
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.56 E-value=71 Score=30.79 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=9.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 177 EDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 177 E~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
|+|+-+......+|...+..|.++|
T Consensus 99 E~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 99 EEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 188
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=43.25 E-value=67 Score=24.77 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 019604 164 VIEEGVMKKLKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 164 avE~~v~~rLReKE~EiEr~~r~n~ELE 191 (338)
-+..-=+.-|+..-+||+++.++|.+|.
T Consensus 14 FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 14 FLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3334444667888899999999998875
No 189
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=42.82 E-value=4e+02 Score=27.48 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 019604 156 RQVRIIMDVIEEGVMKKLKAKEDEIEKI 183 (338)
Q Consensus 156 rq~r~ll~avE~~v~~rLReKE~EiEr~ 183 (338)
.+...+-..+..++..+|..+...++.+
T Consensus 307 qrLd~L~~RL~~a~~~~L~~k~~rL~~L 334 (432)
T TIGR00237 307 LQFEKLEKRKQAALNKQLERTRQKKTRL 334 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666777777777777663
No 190
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=42.10 E-value=17 Score=36.25 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=27.0
Q ss_pred ccccccccccCcceEEeCC-----CCcccchhHHhcC----CCCCCCCCC
Q 019604 288 SRLCRNCRKEESCVLLLPC-----RHLCLCTVCGSSL----HTCPVCKSP 328 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPC-----rHlclC~~C~~~l----~~CPvCR~~ 328 (338)
...|.||.+.+.--++..- ||+ .|.-|...+ -+||.|...
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYL-HCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEE-EcCCCCCcccccCccCCCCCCC
Confidence 4579999998854444221 233 788888775 589999864
No 191
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=42.05 E-value=2.5e+02 Score=24.89 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 019604 121 GNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQV--RIIMDVIEEGVMKKLKA 175 (338)
Q Consensus 121 ~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~--r~ll~avE~~v~~rLRe 175 (338)
|=.|..-|.++..++|.=| +.|+..|.+.-+.+. ..++..+-.....+++.
T Consensus 20 gC~i~~~L~k~~~~v~~~i----~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 20 GCGIQDFLDKYERDVDKDI----QELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHccchHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 4457778888888887654 567777777666554 44566666666666655
No 192
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.58 E-value=3.5e+02 Score=31.42 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019604 143 MEKVRMEVEERKKR----QVRIIMD----VIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQ 209 (338)
Q Consensus 143 ~ErLR~~L~E~R~r----q~r~ll~----avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak 209 (338)
.-++|..|.|++-- -.---|. ++|+.. .-||.||.|.+..-- .|+..+.+|+.|.-.|+.++.
T Consensus 980 e~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~-a~lr~Ke~efeetmd---aLq~di~~lEsek~elKqrl~ 1050 (1243)
T KOG0971|consen 980 EAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQ-ALLRKKEKEFEETMD---ALQADIDQLESEKAELKQRLN 1050 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhh
Confidence 45788888887743 1111222 233322 345777777776433 388889999999999988873
No 193
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=40.90 E-value=1.7e+02 Score=30.59 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019604 125 SFQIQEQQFDIDRLISQHMEKVRM--EVEERKKRQVRIIMDVIEEGVMKKLKAK 176 (338)
Q Consensus 125 ~~ql~qQ~~EID~~i~~q~ErLR~--~L~E~R~rq~r~ll~avE~~v~~rLReK 176 (338)
.+.|++.+.|+|+-++.-.+-|+- ++-+ |--|+.+|..++......|+.-|
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~~m~~~gd-rmgqv~al~g~Akc~~~~r~~~k 304 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMGTMASLGD-RMGQVEALDGAAKCLETLRLQNK 304 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhc
Confidence 346888888998877755444442 2222 34566677777666666666555
No 194
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.59 E-value=2.4e+02 Score=24.33 Aligned_cols=96 Identities=19% Similarity=0.324 Sum_probs=55.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 118 SFLGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 118 s~l~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
..+-.-|.++|.+-..||..+ +.+..+ |+..|..-...|++..+.. ..++++..++. +|+..++.|
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l-~~el~~----l~~~r~~l~~Eiv~l~~~~--e~~~~~~~~~~-------~L~~el~~l 80 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASL-QEELAR----LEAERDELREEIVKLMEEN--EELRALKKEVE-------ELEQELEEL 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-------HHHHHHHHH
Confidence 344455788888777787653 444433 3444554455555544433 22333334444 466666666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 198 CIENQIWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 198 ~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
....+.--.+=-...--+.-||+.++.+..
T Consensus 81 ~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 81 QQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 666666555555666667778888777654
No 195
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=40.39 E-value=2.1e+02 Score=25.73 Aligned_cols=54 Identities=33% Similarity=0.362 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 019604 132 QFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGK 185 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r 185 (338)
-.||+.+=....+-|+..|.+.-+.+-.....-+|....++..+|+.-|+++.+
T Consensus 93 E~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~ 146 (154)
T PF14738_consen 93 EEEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEK 146 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347787777778888888888888888888888888888888888888888654
No 196
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=40.17 E-value=3.7e+02 Score=26.33 Aligned_cols=86 Identities=21% Similarity=0.225 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHH----HHHhhH--
Q 019604 143 MEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKI----GKLNWALEERVKSLCIENQIWRD----LAQSNE-- 212 (338)
Q Consensus 143 ~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~----~r~n~ELEErlrql~~E~q~Wq~----~Ak~nE-- 212 (338)
..++|..|+ +...++.+++.+|..-.++|.....||+.. ..+.+.|+.++.+|.++.+.-+. +-.|.+
T Consensus 37 ~~~Vr~lLq--qy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~E 114 (258)
T PF15397_consen 37 ALKVRKLLQ--QYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHE 114 (258)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555554 556788889999998888888888888643 44555666666666665543221 111111
Q ss_pred ----H-HHHHHHhhHHHHHHHHh
Q 019604 213 ----A-TANALRTNLEQVLASAA 230 (338)
Q Consensus 213 ----A-~a~~Lr~~LeQ~l~~~~ 230 (338)
+ -+..|..+|+++...+.
T Consensus 115 YPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 115 YPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34667888888876553
No 197
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.69 E-value=2e+02 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=19.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019604 181 EKIGKLNWALEERVKSLCIENQIWRDLAQ 209 (338)
Q Consensus 181 Er~~r~n~ELEErlrql~~E~q~Wq~~Ak 209 (338)
..+...+-+|+-+-.||..|-+.||.+-+
T Consensus 42 q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 42 QNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444566667788889999987643
No 198
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=39.60 E-value=2.1e+02 Score=26.23 Aligned_cols=29 Identities=10% Similarity=0.081 Sum_probs=12.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCIENQIWRD 206 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~E~q~Wq~ 206 (338)
+.++.+..+..+|++.+.++.-+.-..|-
T Consensus 92 ~~~~~l~~ri~eLe~~l~~kad~vvsYql 120 (175)
T PRK13182 92 AQLNTITRRLDELERQLQQKADDVVSYQL 120 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 33333333444444444444444444433
No 199
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.41 E-value=2.9e+02 Score=24.87 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.7
Q ss_pred HHHHhhH
Q 019604 216 NALRTNL 222 (338)
Q Consensus 216 ~~Lr~~L 222 (338)
.+|+.+.
T Consensus 178 ~~LkkQ~ 184 (192)
T PF05529_consen 178 EALKKQS 184 (192)
T ss_pred HHHHHHH
Confidence 3344433
No 200
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.20 E-value=3.2e+02 Score=25.43 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 019604 129 QEQQFDIDRLIS 140 (338)
Q Consensus 129 ~qQ~~EID~~i~ 140 (338)
+.-+.+|+.+|.
T Consensus 37 ~~l~~~i~~~l~ 48 (302)
T PF10186_consen 37 EELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333444555544
No 201
>KOG3390 consensus General control of amino-acid synthesis 5-like 1 [Transcription]
Probab=39.07 E-value=2.5e+02 Score=24.13 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 145 KVRMEVEERKKRQVR--------IIMDVIEEGVMKK---LKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 145 rLR~~L~E~R~rq~r--------~ll~avE~~v~~r---LReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
..|++|+|++++.+. +||..+..+|+.- -|..|.||.+ |+-.+.++.....-|-.+
T Consensus 14 ~eRrelqEK~r~EAI~aA~~l~~alVdhlN~gVaqay~Nqkrld~E~k~-------l~~~~A~faKQT~QWl~v 80 (120)
T KOG3390|consen 14 SERRELQEKTRKEAIRAAARLADALVDHLNGGVAQAYVNQKRLDSEIKN-------LAITVAKFAKQTDQWLAV 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHH-------HHHHHHHHHHhhhHHHHH
Confidence 358899999887543 4455544444422 1445677766 788888888888889665
No 202
>PRK02224 chromosome segregation protein; Provisional
Probab=38.84 E-value=5.8e+02 Score=28.21 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=33.4
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANA 217 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~ 217 (338)
+-.+.+.++....+..+|++++..+..+.+.|...|..-++....
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 444556677777778889999999999999999877665544443
No 203
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=38.61 E-value=1.4e+02 Score=29.58 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 149 EVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEK 182 (338)
Q Consensus 149 ~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr 182 (338)
-|-|+|+++...=|..=|..+.=-..-|-+.|.|
T Consensus 270 YlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 270 YLTEQRRQELAQELGLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred hHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhh
Confidence 3456677776665655555554444444444444
No 204
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=38.34 E-value=1.7e+02 Score=22.76 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 146 VRMEVEERKKRQV--RIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 146 LR~~L~E~R~rq~--r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
+|..|...|+-|. -+-+.|+++.--.-| .|+|+.|+.-.|.+++.+++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L-----~iqRmKkKKLAlKDki~~lE 58 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDAL-----RIQRMKKKKLALKDKITKLE 58 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHH-----HHHHHHHHHHhHHHHHHHHH
Confidence 5566666666664 233444444322333 47788888888888777664
No 205
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.96 E-value=9.7 Score=25.33 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCceEE
Q 019604 319 LHTCPVCKSPKTVSVH 334 (338)
Q Consensus 319 l~~CPvCR~~i~~~V~ 334 (338)
-..||+|..+...++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4699999998776654
No 206
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=37.79 E-value=3e+02 Score=24.67 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019604 128 IQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQI 203 (338)
Q Consensus 128 l~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~ 203 (338)
+..|..-.|+.==.|...+|..|-|.-.......... -....+++..-+.|++++.++..+|+++.++.+.|.+.
T Consensus 31 ~~~q~~AsdqWa~YQAKsiK~~l~e~~~~~l~~~~~~-~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~ 105 (157)
T PF14235_consen 31 VIAQAEASDQWAYYQAKSIKQHLAELAADLLELELAA-RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDH 105 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4566778888888999999999988877666544433 45556667777788888888888888888887777663
No 207
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.68 E-value=2.5e+02 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHH
Q 019604 122 NDMSFQIQEQQFD--IDRLISQHMEKVRMEVEERK 154 (338)
Q Consensus 122 ~~l~~ql~qQ~~E--ID~~i~~q~ErLR~~L~E~R 154 (338)
+++.+.|++.... .+.-++.++++|+..+++.+
T Consensus 83 ~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~ 117 (161)
T TIGR02894 83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQ 117 (161)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3455666555443 33444445555544444433
No 208
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=37.32 E-value=4.3e+02 Score=26.33 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 019604 186 LNWALEERVKSLCIENQI 203 (338)
Q Consensus 186 ~n~ELEErlrql~~E~q~ 203 (338)
...+|||++|+|+-|.+.
T Consensus 117 l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 117 LISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 356899999999988774
No 209
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=37.11 E-value=3.8e+02 Score=25.63 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHH-------HhhhhHHH
Q 019604 124 MSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKL------KAKEDEIEK-------IGKLNWAL 190 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rL------ReKE~EiEr-------~~r~n~EL 190 (338)
..++|-.-...|..+..-|.++.-..+.+--+-.+| ++.+|-.....|. ...+.++.+ +...+.
T Consensus 81 als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiR-li~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~-- 157 (234)
T cd07665 81 ALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIR-LLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANK-- 157 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 345666667788888888888888888887776665 5566665555442 233333333 322221
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019604 191 EERVKSLCIENQIWRDLAQS 210 (338)
Q Consensus 191 EErlrql~~E~q~Wq~~Ak~ 210 (338)
.+++.++..|.+.|+.++..
T Consensus 158 ~dK~~~a~~Ev~e~e~k~~~ 177 (234)
T cd07665 158 PDKLQQAKDEIAEWESRVTQ 177 (234)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 46888889999998877643
No 210
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=36.83 E-value=1.7e+02 Score=24.58 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=23.6
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALR 219 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr 219 (338)
..|+.+|..|++.+.+...--..-+.||..=...-..++...|+++..|.
T Consensus 3 ~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~ 52 (103)
T PF08654_consen 3 QARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLA 52 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34666677776665443332222222333323333344455566665554
No 211
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=36.83 E-value=2.5e+02 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=22.5
Q ss_pred cccchhhHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019604 117 FSFLGNDMSFQIQEQQFD--------IDRLISQHMEKVRMEVEERKKRQVRIIMDVI 165 (338)
Q Consensus 117 ~s~l~~~l~~ql~qQ~~E--------ID~~i~~q~ErLR~~L~E~R~rq~r~ll~av 165 (338)
+.-++++|..+|+. .-| +|.+|+ +|+..+|...+.+....|=.+.
T Consensus 7 pv~fS~~ll~~L~~-s~etD~sR~q~~e~~iq---~Rva~eL~~L~~~~~~~~~~~l 59 (142)
T PF07956_consen 7 PVQFSQSLLSQLQS-STETDSSRAQTLELHIQ---ERVAEELKRLEEEELKKFEEAL 59 (142)
T ss_pred CcccCHHHHHHHhC-CCCCChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777764 223 333333 3455555555555544433333
No 212
>PRK14140 heat shock protein GrpE; Provisional
Probab=36.71 E-value=1.1e+02 Score=28.52 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019604 132 QFDIDRLISQHMEKVRMEVEERKKRQVR 159 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~~L~E~R~rq~r 159 (338)
..+|+. +....+.++..+.+.+.+..|
T Consensus 36 ~~~~~~-l~~~i~~l~~ei~elkd~~lR 62 (191)
T PRK14140 36 AELLDE-EQAKIAELEAKLDELEERYLR 62 (191)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345666 445555666666655544443
No 213
>PHA03415 putative internal virion protein; Provisional
Probab=36.68 E-value=1.6e+02 Score=33.45 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh--H
Q 019604 122 NDMSFQIQEQQFDIDRLISQHMEKVRMEVEER-----------KKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLN--W 188 (338)
Q Consensus 122 ~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~-----------R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n--~ 188 (338)
++-++.+..-+.|.|-+++.-.|-|-++|.++ |.+.++.-=.++|..+.+-|--.++|--+..+-. -
T Consensus 299 ~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~dp 378 (1019)
T PHA03415 299 DNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMADP 378 (1019)
T ss_pred ccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCCC
Confidence 45677888899999999999999999999995 3445666667888888888877788887755543 2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019604 189 ALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 189 ELEErlrql~~E~q~Wq~~ 207 (338)
-+--.++.|..|.+.|+..
T Consensus 379 ~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 379 NLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 3556788888898888776
No 214
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=36.66 E-value=3.1e+02 Score=31.49 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 190 LEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 190 LEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
++.++..+.+|.+.-|..|+.|-.-.--||..|.|.+
T Consensus 363 ~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~ 399 (980)
T KOG0980|consen 363 YENQLLALEGELQEQQREAQENREEQEQLRNELAQLL 399 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444333
No 215
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=36.39 E-value=12 Score=33.06 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=25.7
Q ss_pred ccccccccccC---cceEEeCCCCcc-----cchhHHhcC
Q 019604 288 SRLCRNCRKEE---SCVLLLPCRHLC-----LCTVCGSSL 319 (338)
Q Consensus 288 ~~~C~vC~~~~---~~vvLlPCrHlc-----lC~~C~~~l 319 (338)
...|.||+++- ..||.+||+-.. +|.+|..++
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 56899999864 469999999432 899999886
No 216
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.27 E-value=4.3e+02 Score=26.05 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=21.3
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
...|+++|.|+..+..+-.|..+||.+|.+|.-
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~ 245 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMEST 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777666666666666666666543
No 217
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=36.25 E-value=9.9 Score=31.59 Aligned_cols=41 Identities=22% Similarity=0.664 Sum_probs=31.9
Q ss_pred CCCcccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCC
Q 019604 284 HSGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPK 329 (338)
Q Consensus 284 ~~~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i 329 (338)
.......|..|..+.+--.. |. +|..|+..+..|+-|..+.
T Consensus 51 pLt~p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~~ 91 (92)
T PF10217_consen 51 PLTQPKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKPP 91 (92)
T ss_pred cCCCCccccccccchHHHHH----HH-HHHHHHHhhccCcccCCCC
Confidence 44556789999887765554 44 8999999999999998753
No 218
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.14 E-value=11 Score=41.29 Aligned_cols=40 Identities=30% Similarity=0.573 Sum_probs=29.2
Q ss_pred ccccccccccCc----ceEEeCCCCcccchhHHhcC--CCCCCCCCCC
Q 019604 288 SRLCRNCRKEES----CVLLLPCRHLCLCTVCGSSL--HTCPVCKSPK 329 (338)
Q Consensus 288 ~~~C~vC~~~~~----~vvLlPCrHlclC~~C~~~l--~~CPvCR~~i 329 (338)
...|.||..... .-+++-|+|. +|.-|...+ ..|| |...-
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~De 56 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKRDE 56 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCccc
Confidence 467889965443 3455669999 999999997 7899 55433
No 219
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=36.05 E-value=36 Score=35.46 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 019604 162 MDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 162 l~avE~~v~~rLReKE~EiEr~~r~n~ELEErlr 195 (338)
|.|||++ .|||+||-|.-+....-.||.++|.
T Consensus 373 LeAIErA--EklR~kEle~r~~d~Fq~ELg~FVe 404 (426)
T smart00806 373 LEAIERA--EKLREKELEYRRVDEFEKELGNFVE 404 (426)
T ss_pred HHHHHHH--HHHHHHHHHhccccHHHHHHHHHhc
Confidence 5677776 8899999888887777777776653
No 220
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.78 E-value=4.7e+02 Score=26.31 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 134 DIDRLISQHMEKVRMEVEERKKRQ--VRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 134 EID~~i~~q~ErLR~~L~E~R~rq--~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
.+.++|-.++|.|-+..+-.++.- ...|.+ -++|+.||.++|.|.++| |-+.++.+...
T Consensus 9 ~~~~~i~k~nee~~~~~~~~~k~~e~~qkl~s-----r~~~~~ekke~i~r~n~k---~~d~v~~~~~~ 69 (359)
T KOG4398|consen 9 QLKQTICKGNEEMEKNSEGLLKTKEKNQKLYS-----RAQRHQEKKEKIQRHNRK---LGDLVEKKTID 69 (359)
T ss_pred HHHHHHhcCcHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhh---cchHHHHHHHH
Confidence 355677777888877777666532 122222 347788888888888776 55555554443
No 221
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=35.65 E-value=6.8e+02 Score=28.92 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=24.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
-++|+.++.-.-+|+++++..+..-.-..-..-+.+|++-|-|...|+.+
T Consensus 377 ve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekl 426 (1265)
T KOG0976|consen 377 VEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKL 426 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 34444444444444444444433222222233456777777666655543
No 222
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=35.16 E-value=1.4e+02 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlr 195 (338)
..++.||.||..++++..++...-+
T Consensus 101 ~e~~~Kdsei~~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 101 AELRAKDSEIDRLREKLDELNRANK 125 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888886666555544433
No 223
>PF06303 MatP: Organiser of macrodomain of Terminus of chromosome; InterPro: IPR009390 Many bacteria have circular genomes that are large in comparison to their cellular dimensions; this imposes the necessity for compaction of the chromosome during cellular growth, replication, transcription, and segregation. Compaction of chromosomes results in the formation of structures called nucleoids. Nucleoids can be generated by a number of different processes: they include unrestrained DNA supercoiling, formation of a chromatin-like structure through the interaction of DNA binding proteins, condensation by structural maintenance of chromosomes (SMC)-like proteins, and macromolecular crowding []. Chromosome replication and segregation are intimately linked and tightly controlled to ensure that daughter cells each receive a complete copy of the genome. Chromosomes have replication origin (Ori) and termination (Ter) regions that are diametrically opposed. During the process of chromosome replication and cell division the Ori and Ter regions form two macrodomains (MDs), the Ori MD is centred on migS, a 25 bp sequence, that acts as the cis-acting site for the bipolar positioning of oriC []. The Ter MD is centred on dif (deletion-induced filamentation), which is a resolvase site that reduces chromosome multimers to monomers []. The Ori and Ter MDs are insulated from one and other by non-structural regions and other nucleoids. Chromosome replication initiates bidirectionally from oriC. Within the Ori MD with sister chromatids being located in separate cell halves and with the Ter macrodomain anchored to the cell pole. Cell division occurs with the completion of replication of the Ter region and the subsequent separation of the two sister chromatids [, ]. This entry contains MatP (YcbG), which is a component of the MatP/MatS site-specific system that organises the Ter macrodomain (MD) in Escherichia coli (strain K12) and related enterobacteria during replication of the chromosome. In E. coli there are 23 matS sequences, located in the Ter region which is centred on dif. The matS consensus is a palindromic sequence 5'-GTGAC[AG][CT]GTCAC, which is the recognition sequence for MatP. MatP binds to the matS sequences; and is critical for Ter MD formation. Inactivation of matP causes severe defects in chromosome segregation and cell division revealing its role as a major organiser of the Ter MD [].
Probab=34.96 E-value=47 Score=29.87 Aligned_cols=74 Identities=20% Similarity=0.458 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 127 QIQEQQFDIDRLISQH-----MEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 127 ql~qQ~~EID~~i~~q-----~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
.++.+=.+|+.-|..| .-+|+..|+.+|+||.- .|... .+-+.+..|.
T Consensus 46 ~le~~P~~v~~WI~~~m~~~l~nklkQaIRArRkR~fn-----ae~~~----------------------t~kKSIDLey 98 (148)
T PF06303_consen 46 KLENEPVKVNEWIKKHMNPELWNKLKQAIRARRKRHFN-----AEHQH----------------------TRKKSIDLEY 98 (148)
T ss_pred HhhcChHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhcc-----ccccC----------------------CCcceeeecH
Confidence 4555566777766654 56788888888888862 12111 1223555666
Q ss_pred HHHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 202 QIWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 202 q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
.+|+.++..-...-.+|..++.+++.
T Consensus 99 ~vW~rLS~lA~~~g~TLSEtI~~li~ 124 (148)
T PF06303_consen 99 RVWQRLSALAQRRGMTLSETIEYLIE 124 (148)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 66776666666655666666666654
No 224
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.94 E-value=4.6e+02 Score=25.94 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHhh------HHHHHHHHhhHHHHHHHHh
Q 019604 163 DVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCI-ENQIWRDLAQSN------EATANALRTNLEQVLASAA 230 (338)
Q Consensus 163 ~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~-E~q~Wq~~Ak~n------EA~a~~Lr~~LeQ~l~~~~ 230 (338)
..-|....+.|++.|.|-+.+.+...+|++..+.+.. |.+.|+....-. +..-.+|.++++.+..+..
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777777753 445776654322 1222444555555554443
No 225
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.83 E-value=1.3e+02 Score=31.82 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=21.8
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
...|++.+.++..+++++|+.++.|++.-+..
T Consensus 88 LrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 88 IRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34566666677778888888777777665443
No 226
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=34.62 E-value=1.6e+02 Score=26.28 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 019604 144 EKVRMEVEERK 154 (338)
Q Consensus 144 ErLR~~L~E~R 154 (338)
++|+.+|+..+
T Consensus 14 ~~L~~EL~~L~ 24 (158)
T PRK05892 14 DHLEAELARLR 24 (158)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 227
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.37 E-value=5.4e+02 Score=26.57 Aligned_cols=29 Identities=21% Similarity=0.074 Sum_probs=18.5
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
+++...+.||+++.....++++.++++..
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 44566677777777666666666666544
No 228
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=34.35 E-value=1.1e+02 Score=27.20 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=9.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~ 198 (338)
+|...++.+-++|+.|++.|.
T Consensus 45 aeY~aak~~~~~le~rI~~L~ 65 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVRFLT 65 (156)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444555544443
No 229
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=34.20 E-value=16 Score=41.77 Aligned_cols=44 Identities=25% Similarity=0.515 Sum_probs=25.1
Q ss_pred cccccccccccC-------cceEEeCCCCcccchhHHhcC------CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEE-------SCVLLLPCRHLCLCTVCGSSL------HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~-------~~vvLlPCrHlclC~~C~~~l------~~CPvCR~~i~~ 331 (338)
+...|.||+.-- .+--.-.|+|- +=..|--++ ..||+||..|+.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 456899999721 11111224443 334454332 799999988763
No 230
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=33.98 E-value=1.2e+02 Score=27.01 Aligned_cols=9 Identities=11% Similarity=0.349 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 019604 145 KVRMEVEER 153 (338)
Q Consensus 145 rLR~~L~E~ 153 (338)
+|+.+|++.
T Consensus 14 ~L~~EL~~L 22 (157)
T PRK01885 14 RLKQELDYL 22 (157)
T ss_pred HHHHHHHHH
Confidence 344444433
No 231
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=33.95 E-value=8.3e+02 Score=28.62 Aligned_cols=30 Identities=33% Similarity=0.245 Sum_probs=13.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIWR 205 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~Wq 205 (338)
++++.+++.+...+|+..++++..|-+.|.
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 232
>PRK09039 hypothetical protein; Validated
Probab=33.85 E-value=5e+02 Score=26.01 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
|...+++|+-+..+..+.++++..|..+
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455554444433
No 233
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=33.66 E-value=30 Score=40.53 Aligned_cols=47 Identities=28% Similarity=0.604 Sum_probs=34.5
Q ss_pred ccccccccccCcceEEeC-CCCcc----cchhHHhcC--C-----CCCCCCCCCCceEEE
Q 019604 288 SRLCRNCRKEESCVLLLP-CRHLC----LCTVCGSSL--H-----TCPVCKSPKTVSVHV 335 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlP-CrHlc----lC~~C~~~l--~-----~CPvCR~~i~~~V~V 335 (338)
...|.-|...... .+.| ||+.- .|..|...+ . .||-|..+.....++
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 3789999985444 3777 88552 599998875 2 899999888776554
No 234
>PRK11020 hypothetical protein; Provisional
Probab=33.48 E-value=2.7e+02 Score=24.28 Aligned_cols=50 Identities=22% Similarity=0.107 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHhhH
Q 019604 163 DVIEEGVMKKLKAKEDEIEKIGKLNWALEE-RVKSLCIENQIWRDLAQSNE 212 (338)
Q Consensus 163 ~avE~~v~~rLReKE~EiEr~~r~n~ELEE-rlrql~~E~q~Wq~~Ak~nE 212 (338)
++..++-...+.+-..||+++.++..-|.. +-+.|..|++..+++.=+.+
T Consensus 23 aa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~ 73 (118)
T PRK11020 23 AASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRA 73 (118)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 344455556677777888888887777766 77889999998776654443
No 235
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.24 E-value=34 Score=33.56 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=32.3
Q ss_pred ccccccccc----ccCcceEEeCCCCcccchhHHhc--CCCCCCCCCCCCceEEEe
Q 019604 287 GSRLCRNCR----KEESCVLLLPCRHLCLCTVCGSS--LHTCPVCKSPKTVSVHVN 336 (338)
Q Consensus 287 ~~~~C~vC~----~~~~~vvLlPCrHlclC~~C~~~--l~~CPvCR~~i~~~V~V~ 336 (338)
....|.|=. +..+-++|++|||. +=..=... ...|++|.+++...=.|.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeikas~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIKASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEecccee-ccHHHHHHhhhccccccCCcccccCeEe
Confidence 346777744 35677889999998 32222222 379999999887654443
No 236
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=33.02 E-value=5.1e+02 Score=25.90 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 019604 141 QHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRT 220 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~ 220 (338)
.|.|+|+++- .+|+=|+-+|=+|++. -.++.-+...|+..+.|.|.-|-|-...|..-.|--.--++..|..++.|-.
T Consensus 25 ~QldkLkKE~-qQrQfQleSlEAaLqK-QKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEg 102 (307)
T PF10481_consen 25 QQLDKLKKER-QQRQFQLESLEAALQK-QKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEG 102 (307)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 4566666542 2334444333333322 1233334445566677777777777777776666666666777888887777
Q ss_pred hHHHHHHH
Q 019604 221 NLEQVLAS 228 (338)
Q Consensus 221 ~LeQ~l~~ 228 (338)
.|.....+
T Consensus 103 Ql~s~Kkq 110 (307)
T PF10481_consen 103 QLNSCKKQ 110 (307)
T ss_pred HHHHHHHH
Confidence 76655443
No 237
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.01 E-value=2.5e+02 Score=27.07 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=7.4
Q ss_pred ccchhhHHHHHHHHH
Q 019604 118 SFLGNDMSFQIQEQQ 132 (338)
Q Consensus 118 s~l~~~l~~ql~qQ~ 132 (338)
..+-+|+...|+++.
T Consensus 68 ~~~~~~~~~~l~r~i 82 (233)
T KOG4739|consen 68 PRLIQDLYRKLQRVI 82 (233)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555543
No 238
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.66 E-value=3.9e+02 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=18.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 019604 180 IEKIGKLNWALEERVKSLCIENQIWRDLAQSNEA 213 (338)
Q Consensus 180 iEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA 213 (338)
+.++.+.|.+|++++.+|..+.+.-+.+..+|+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~ 104 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENAR 104 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666655555555444443
No 239
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=32.59 E-value=6.4e+02 Score=26.91 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHH
Q 019604 121 GNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKI-GKLNWALEERVKSLCI 199 (338)
Q Consensus 121 ~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~-~r~n~ELEErlrql~~ 199 (338)
+|+|.++|.+-+.||-. |..++++++..|...-.+++ .=+....+|+..|.||+.+ .|+|.-+..|-++...
T Consensus 403 dDEvlaeLR~lqaeLk~-vS~~N~k~k~~Ll~la~eE~------a~qe~~q~lddlDkqI~qaYvKr~r~~kkrKkht~~ 475 (516)
T KOG4191|consen 403 DDEVLAELRKLQAELKA-VSAHNRKKKHDLLRLAPEEM------ARQEFQQVLDDLDKQIEQAYVKRNRSRKKRKKHTVT 475 (516)
T ss_pred hHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 200 ENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 200 E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
|.+.--..-...++....|++-+.+..
T Consensus 476 ek~~~~~~~~eq~~~~~~Lksl~kr~~ 502 (516)
T KOG4191|consen 476 EKIGSTSQISEQSGSFPVLKSLMKRSM 502 (516)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhH
No 240
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.54 E-value=3.9e+02 Score=28.32 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019604 138 LISQHMEKVRMEVEERKKRQVRIIMDVIEEG 168 (338)
Q Consensus 138 ~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~ 168 (338)
+|+.+.||||.-|..+.+.|...+....++.
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee 287 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQYRAEE 287 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777766665555544
No 241
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=32.37 E-value=4.9e+02 Score=29.95 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=41.7
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLAS 228 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~ 228 (338)
+-|-.|+.+.+++..+-.||.+....+.+=..+|-.....+|. ..|+|.+..
T Consensus 209 ~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE~------k~Leqel~~ 260 (984)
T COG4717 209 KLLESRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQEW------KQLEQELTR 260 (984)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------HHHHHHhcc
Confidence 4467788888888888888888777788878888888888998 478888864
No 242
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.25 E-value=3.4e+02 Score=25.95 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=22.0
Q ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 169 VMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 169 v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
....|++|+.+++++.++..+|..+...+..|.+
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 3455666777777777777777666666666554
No 243
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.19 E-value=4.1e+02 Score=27.03 Aligned_cols=99 Identities=12% Similarity=0.266 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh---------HHHHHH
Q 019604 124 MSFQIQEQQFDIDRLISQ-HMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLN---------WALEER 193 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~~-q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n---------~ELEEr 193 (338)
+...|++.+..++++.+- ..-.....| +..+++...+-..+..++..+|..+...++.+..+. ....++
T Consensus 280 ~~~~L~~~~~~L~~L~~rL~~~~P~~~l-~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qr 358 (438)
T PRK00286 280 MRRRLEQKRQRLDQLARRLKFQSPERLL-AQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQR 358 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 344566666677665421 101111112 223344455556666777777777777776644332 112233
Q ss_pred HHHHHHH-HHHHHHHHHhhHHHHHHHHhhHH
Q 019604 194 VKSLCIE-NQIWRDLAQSNEATANALRTNLE 223 (338)
Q Consensus 194 lrql~~E-~q~Wq~~Ak~nEA~a~~Lr~~Le 223 (338)
+.++..- .++|+..-+.++.-...|...|+
T Consensus 359 L~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~ 389 (438)
T PRK00286 359 LEQLEQRLRRAMRRQLKRKRQRLEALAQQLE 389 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 24566666556655554444443
No 244
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=32.18 E-value=2.1e+02 Score=24.20 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=19.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhHH
Q 019604 118 SFLGNDMSFQIQEQQFDIDRLISQHME 144 (338)
Q Consensus 118 s~l~~~l~~ql~qQ~~EID~~i~~q~E 144 (338)
..|++ |..+|--=+++|..||-..+|
T Consensus 54 t~L~~-LR~~lt~lQddIN~fLTeRMe 79 (103)
T PF08738_consen 54 TYLSE-LRAQLTTLQDDINEFLTERME 79 (103)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 35666 777888888999999976543
No 245
>PLN02678 seryl-tRNA synthetase
Probab=32.13 E-value=2.9e+02 Score=28.98 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=13.1
Q ss_pred HHHHHHHHhhHHHHHHHHhHh
Q 019604 212 EATANALRTNLEQVLASAAAQ 232 (338)
Q Consensus 212 EA~a~~Lr~~LeQ~l~~~~~~ 232 (338)
|+....|...|.+++....+.
T Consensus 91 e~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 91 EAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 445555666777777766543
No 246
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.71 E-value=5.2e+02 Score=25.91 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=13.5
Q ss_pred HHhhHHHHHH----HhhhhHHHHHHHHHHH
Q 019604 173 LKAKEDEIEK----IGKLNWALEERVKSLC 198 (338)
Q Consensus 173 LReKE~EiEr----~~r~n~ELEErlrql~ 198 (338)
|-+||.-|+| |+..|..||..|..++
T Consensus 140 L~ekDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 140 LAEKDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred hchhhhhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 4445555554 5555555555555443
No 247
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.42 E-value=14 Score=33.73 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=21.4
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEE
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVH 334 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~ 334 (338)
.+.|.+| ||. |.. ..-..||+|..++..+..
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~~ 164 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFEK 164 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhhc
Confidence 5677777 665 333 445899999998776543
No 248
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=31.39 E-value=27 Score=29.52 Aligned_cols=44 Identities=30% Similarity=0.623 Sum_probs=30.2
Q ss_pred ccccccccCcceEEeCCCC------cccchhHHhcC--------CCCCCCCCCCCceE
Q 019604 290 LCRNCRKEESCVLLLPCRH------LCLCTVCGSSL--------HTCPVCKSPKTVSV 333 (338)
Q Consensus 290 ~C~vC~~~~~~vvLlPCrH------lclC~~C~~~l--------~~CPvCR~~i~~~V 333 (338)
.|--|.+.-.+--|.|=+| ..+|..|...| ..||.|+++++-.-
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~C 94 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPGC 94 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCccc
Confidence 4555666666666666653 35677787664 58999999987543
No 249
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.30 E-value=3e+02 Score=29.25 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=6.3
Q ss_pred HHhHHHHHHHHHHH
Q 019604 140 SQHMEKVRMEVEER 153 (338)
Q Consensus 140 ~~q~ErLR~~L~E~ 153 (338)
--+..+||..|++.
T Consensus 65 va~~k~~r~~~~~l 78 (472)
T TIGR03752 65 VAEVKELRKRLAKL 78 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 250
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.22 E-value=7.9e+02 Score=27.54 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHH
Q 019604 126 FQIQEQQFDIDRLISQH-------------MEKVRMEVEERKKRQVRIIMDVIEE--------GVMKKLKAKEDEIEK 182 (338)
Q Consensus 126 ~ql~qQ~~EID~~i~~q-------------~ErLR~~L~E~R~rq~r~ll~avE~--------~v~~rLReKE~EiEr 182 (338)
.++.+.+.|.|||..++ --+||.+|.|.+-|..|.|-..-|- +-..-||+--.|.|-
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~ 125 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEG 125 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46677788888887755 4589999999999999988665441 112235555555555
No 251
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=31.21 E-value=10 Score=37.19 Aligned_cols=42 Identities=26% Similarity=0.582 Sum_probs=29.1
Q ss_pred cccccc----cCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceEE
Q 019604 291 CRNCRK----EESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVH 334 (338)
Q Consensus 291 C~vC~~----~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~ 334 (338)
|.+|.+ -...+-.+||+|.-- ..|...+ -.||+|.. +....+
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~ 210 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSH 210 (276)
T ss_pred CchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHH
Confidence 888876 456777889999853 4454443 79999988 544433
No 252
>PRK10698 phage shock protein PspA; Provisional
Probab=31.18 E-value=4.5e+02 Score=24.68 Aligned_cols=81 Identities=10% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHhhhhHHHHHHHHHHHH
Q 019604 122 NDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIE--KIGKLNWALEERVKSLCI 199 (338)
Q Consensus 122 ~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiE--r~~r~n~ELEErlrql~~ 199 (338)
..|-.+++++...++.| +.+..+|+.-|++.|.++..-+.+.--..+..++++.-.-+. .+..+--.+|++|.++++
T Consensus 102 ~~l~~~~~~~~~~~~~L-~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea 180 (222)
T PRK10698 102 ATLEHEVTLVDETLARM-KKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180 (222)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 019604 200 ENQI 203 (338)
Q Consensus 200 E~q~ 203 (338)
++++
T Consensus 181 ~aea 184 (222)
T PRK10698 181 EAES 184 (222)
T ss_pred HHhH
No 253
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.06 E-value=3.3e+02 Score=26.75 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 019604 133 FDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 133 ~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELE 191 (338)
.+|..-|+.....+...++..++.-. =|.+=|...-.|+..|-.|+||..||..-|+
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l~--~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQLN--NLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665553322 2344455666788888899999888776654
No 254
>PLN02436 cellulose synthase A
Probab=30.92 E-value=34 Score=39.45 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=32.3
Q ss_pred cccccccccccC----cceEEeCCCCc--ccchhHHhc-----CCCCCCCCCCCC
Q 019604 287 GSRLCRNCRKEE----SCVLLLPCRHL--CLCTVCGSS-----LHTCPVCKSPKT 330 (338)
Q Consensus 287 ~~~~C~vC~~~~----~~vvLlPCrHl--clC~~C~~~-----l~~CPvCR~~i~ 330 (338)
+...|.||.+.- -.=+|+-|... .+|..|..- -+.||.|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345899999852 33377888632 489999865 279999998765
No 255
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=30.90 E-value=3.3e+02 Score=26.00 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 150 VEERKKRQVRII--MDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 150 L~E~R~rq~r~l--l~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
++|.|+.=+.+. |.+....+..-||.+|++|.+ |.+-++....|.+.-
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~-------L~~Ll~~a~~ERDEA 52 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAH-------LKDLLKKAYQERDEA 52 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 456665554444 223333455667777777777 777777877776543
No 256
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=30.87 E-value=5.1e+02 Score=25.26 Aligned_cols=101 Identities=25% Similarity=0.299 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhhhhHHHH------HHHHHHHH
Q 019604 127 QIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKK-LKAKEDEIEKIGKLNWALE------ERVKSLCI 199 (338)
Q Consensus 127 ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~r-LReKE~EiEr~~r~n~ELE------Erlrql~~ 199 (338)
-+..-.--||.+.--.+++.-..+++.|+.|...+..+++...+.. |-+|-+=+-...|.|.+|+ |++=.+..
T Consensus 111 ~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~ 190 (247)
T KOG3976|consen 111 AIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAK 190 (247)
T ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999899999999999999999999999998754332 3333344455566666664 45566778
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 019604 200 ENQIWRDLAQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 200 E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
|.-.|-+-=...|++...| .=+|++...
T Consensus 191 E~K~~lDy~v~~e~~~rr~--eqe~l~ksI 218 (247)
T KOG3976|consen 191 EVKRRLDYWVETEASKRRL--EQEQLLKSI 218 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 8888888877888766533 334555443
No 257
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=30.78 E-value=1.5e+02 Score=28.52 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=25.9
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
..+.++-...||++.+++.+|+.|+++|....
T Consensus 111 ~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 111 ERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 35556667789999999999999999988543
No 258
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.70 E-value=7.7e+02 Score=27.26 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=7.6
Q ss_pred HHHHhhHHHHHHHhhh
Q 019604 171 KKLKAKEDEIEKIGKL 186 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~ 186 (338)
++|++|..+++.+.++
T Consensus 488 ~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 488 KELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555553333
No 259
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=30.57 E-value=2.9e+02 Score=26.08 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=34.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 019604 134 DIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEE---------GVMKKLKAKEDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 134 EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~---------~v~~rLReKE~EiEr~~r~n~ELEErlr 195 (338)
.++. ++.+.|+||++|..-|+++-.....-=.+ .|++=-|+.-.-.-.|=+||..||..|+
T Consensus 132 ~~~~-l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 132 ELGS-LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred cchh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444 34678888888888777766554443222 2222223333334456666777776654
No 260
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.38 E-value=1.5e+02 Score=22.22 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=26.4
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQ 209 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak 209 (338)
..+.+.+.+++++...|.+|++.++.|...-..=..+|+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 456677778888888888888888888433333344444
No 261
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=30.29 E-value=1.9e+02 Score=30.45 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019604 189 ALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 189 ELEErlrql~~E~q~Wq~~A 208 (338)
|||.-||=-.+|+.+||.+|
T Consensus 354 eLESIVRiKqAEA~MFQ~kA 373 (446)
T PF07227_consen 354 ELESIVRIKQAEAKMFQLKA 373 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36666666677777777666
No 262
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.07 E-value=6.1e+02 Score=25.86 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHhh
Q 019604 146 VRMEVEERKKRQVRIIMDVIE---EGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ-IWRDLAQSNEATANALRTN 221 (338)
Q Consensus 146 LR~~L~E~R~rq~r~ll~avE---~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q-~Wq~~Ak~nEA~a~~Lr~~ 221 (338)
+...++.+|+-|...+-+.=| +...+|+++||.|+..+.|...+-.++|+++..|-. ..-..-+.-|.-.+.+...
T Consensus 320 ~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 320 LQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 019604 222 LEQVL 226 (338)
Q Consensus 222 LeQ~l 226 (338)
-.++.
T Consensus 400 k~~~~ 404 (406)
T KOG3859|consen 400 KTAAE 404 (406)
T ss_pred HHHHh
No 263
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=30.02 E-value=5.3e+02 Score=25.19 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
++|-+++.|++. +++|++.|..|+--.-.+-+--..-+-.|+..++.+-
T Consensus 156 ~eleele~e~ee-------~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 156 KELEELEAEYEE-------VQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 444444444443 6678888888877665555555666667777666553
No 264
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=30.01 E-value=20 Score=22.24 Aligned_cols=18 Identities=39% Similarity=1.189 Sum_probs=10.6
Q ss_pred chhHHhcC----CCCCCCCCCC
Q 019604 312 CTVCGSSL----HTCPVCKSPK 329 (338)
Q Consensus 312 C~~C~~~l----~~CPvCR~~i 329 (338)
|..|...+ ..||.|..++
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 55555553 5677776553
No 265
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.99 E-value=29 Score=28.23 Aligned_cols=43 Identities=23% Similarity=0.692 Sum_probs=17.8
Q ss_pred cccccccccc----CcceEEeCCCCc--ccchhHHhc-----CCCCCCCCCCCC
Q 019604 288 SRLCRNCRKE----ESCVLLLPCRHL--CLCTVCGSS-----LHTCPVCKSPKT 330 (338)
Q Consensus 288 ~~~C~vC~~~----~~~vvLlPCrHl--clC~~C~~~-----l~~CPvCR~~i~ 330 (338)
...|.||.+. .-.-+|+-|... .+|+.|..- .+.||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4678888873 223355556532 368889764 489999997654
No 266
>PRK04023 DNA polymerase II large subunit; Validated
Probab=29.91 E-value=41 Score=38.67 Aligned_cols=48 Identities=29% Similarity=0.624 Sum_probs=35.1
Q ss_pred cccccccccccCcceEEeC-CCC----cccchhHHhcC--CCCCCCCCCCCceEEE
Q 019604 287 GSRLCRNCRKEESCVLLLP-CRH----LCLCTVCGSSL--HTCPVCKSPKTVSVHV 335 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlP-CrH----lclC~~C~~~l--~~CPvCR~~i~~~V~V 335 (338)
..+.|.-|.... .....| ||. ..+|..|.... ..||-|.........+
T Consensus 625 g~RfCpsCG~~t-~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~s~~ 679 (1121)
T PRK04023 625 GRRKCPSCGKET-FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSKR 679 (1121)
T ss_pred cCccCCCCCCcC-CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCccceE
Confidence 357899998874 334556 774 35899998876 5899999887765544
No 267
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=29.62 E-value=3.5e+02 Score=22.88 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=19.1
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 175 AKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 175 eKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
+.+.|++++..++..|+..++.|.-+
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56677777777777777777777665
No 268
>PRK14127 cell division protein GpsB; Provisional
Probab=29.59 E-value=1.2e+02 Score=25.79 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q 019604 132 QFDIDRLISQ 141 (338)
Q Consensus 132 ~~EID~~i~~ 141 (338)
..|+|.||..
T Consensus 25 ~~EVD~FLd~ 34 (109)
T PRK14127 25 QDEVDKFLDD 34 (109)
T ss_pred HHHHHHHHHH
Confidence 3577877754
No 269
>PRK13677 hypothetical protein; Provisional
Probab=29.50 E-value=2.2e+02 Score=25.01 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 124 MSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEK 182 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr 182 (338)
+...|..=-.|+|++.+.+.+ +.-.++..-.=|.-+|..|..+..|-|+.||+
T Consensus 72 i~~~l~~vidELd~i~~~~~~------e~d~K~kiL~dLrHLE~Vv~~KIaEIe~dLek 124 (125)
T PRK13677 72 ISPNLRYVIDELDQICQRDRE------EVDLKRKILDDLRHLESVVANKISEIEADLEK 124 (125)
T ss_pred ccHHHHHHHHHHHHHhcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555666666788888874432 12223333333456788888888888888776
No 270
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.25 E-value=6.2e+02 Score=25.72 Aligned_cols=11 Identities=18% Similarity=0.142 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 019604 129 QEQQFDIDRLI 139 (338)
Q Consensus 129 ~qQ~~EID~~i 139 (338)
.++...||.+.
T Consensus 263 ~e~~q~Ld~l~ 273 (438)
T PRK00286 263 AELLQRLQQLQ 273 (438)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 271
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=29.14 E-value=3.2e+02 Score=22.31 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 019604 190 LEERVKSLCI 199 (338)
Q Consensus 190 LEErlrql~~ 199 (338)
+.+++..+..
T Consensus 107 ~~~~~~~l~~ 116 (120)
T PF11740_consen 107 AEAQAEELEA 116 (120)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 272
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.09 E-value=7.8e+02 Score=26.82 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Q 019604 198 CIENQIWRDLAQSNEATANALRTNLEQVLAS 228 (338)
Q Consensus 198 ~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~ 228 (338)
+.|-..-++-+..++..-..|-..++++..+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555566666666666665433
No 273
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=29.03 E-value=31 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=21.3
Q ss_pred ccccccccCcceEEeCCCCcccchhHHhcC
Q 019604 290 LCRNCRKEESCVLLLPCRHLCLCTVCGSSL 319 (338)
Q Consensus 290 ~C~vC~~~~~~vvLlPCrHlclC~~C~~~l 319 (338)
.|.+|......-+.+ .+++ +|.+|...+
T Consensus 1 ~CiiC~~~~~~GI~I-~~~f-IC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKF-ICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeE-ehHHHHHHh
Confidence 488998877765544 6777 899999876
No 274
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=28.99 E-value=3e+02 Score=25.49 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=5.6
Q ss_pred HHHhHHHHHHHHH
Q 019604 139 ISQHMEKVRMEVE 151 (338)
Q Consensus 139 i~~q~ErLR~~L~ 151 (338)
+....+.++.+++
T Consensus 130 ~~~~~~~~~~G~~ 142 (176)
T PF12999_consen 130 LEEEEEIYKEGLK 142 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 275
>PHA01750 hypothetical protein
Probab=28.96 E-value=2.3e+02 Score=22.50 Aligned_cols=23 Identities=17% Similarity=0.534 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 019604 134 DIDRLISQHMEKVRMEVEERKKR 156 (338)
Q Consensus 134 EID~~i~~q~ErLR~~L~E~R~r 156 (338)
-|..+++.+.+.||++|++-..|
T Consensus 35 AvkeIV~~ELdNL~~ei~~~kik 57 (75)
T PHA01750 35 AVKEIVNSELDNLKTEIEELKIK 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555544433
No 276
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=28.49 E-value=15 Score=38.85 Aligned_cols=27 Identities=26% Similarity=0.711 Sum_probs=21.4
Q ss_pred CcccccccccccCcceEEeCCCCcc--cchhHHhc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLC--LCTVCGSS 318 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlc--lC~~C~~~ 318 (338)
....+|-||.++.+ |.|+- .|..|...
T Consensus 267 ~~e~~CAVCgDnAa------CqHYGvRTCEGCKGF 295 (605)
T KOG4217|consen 267 SAEGLCAVCGDNAA------CQHYGVRTCEGCKGF 295 (605)
T ss_pred CccceeeecCChHH------hhhcCccccccchHH
Confidence 44689999999988 99985 48887544
No 277
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=28.47 E-value=25 Score=35.97 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.4
Q ss_pred cccccccccCcce
Q 019604 289 RLCRNCRKEESCV 301 (338)
Q Consensus 289 ~~C~vC~~~~~~v 301 (338)
-.|.||.++.+..
T Consensus 16 ElCPVCGDkVSGY 28 (475)
T KOG4218|consen 16 ELCPVCGDKVSGY 28 (475)
T ss_pred cccccccCccccc
Confidence 3688888887653
No 278
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=28.37 E-value=2.1e+02 Score=32.18 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019604 121 GNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEE 167 (338)
Q Consensus 121 ~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~ 167 (338)
-+-+---|+..+.-..|-.+++.|=++.+|-+.-|-++|-+|.-=|.
T Consensus 570 EQHVEnvlksyqqr~~Rk~QLEkEM~kagLpd~~q~qMrkmL~QKES 616 (1034)
T KOG0608|consen 570 EQHVENVLKSYQQREKRKKQLEKEMVKAGLPDIMQNQMRKMLQQKES 616 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Confidence 33333344444555555566666666666666666666544443333
No 279
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=28.29 E-value=5.8e+02 Score=25.07 Aligned_cols=18 Identities=6% Similarity=0.215 Sum_probs=10.0
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 019604 137 RLISQHMEKVRMEVEERK 154 (338)
Q Consensus 137 ~~i~~q~ErLR~~L~E~R 154 (338)
.|+..|.++++..|++..
T Consensus 173 ~fl~~ql~~~~~~l~~ae 190 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATK 190 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566666555555544
No 280
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.26 E-value=7e+02 Score=26.03 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 019604 124 MSFQIQEQQFDIDRL 138 (338)
Q Consensus 124 l~~ql~qQ~~EID~~ 138 (338)
|..+|++.+.++.++
T Consensus 76 l~~~l~~l~~~~~~~ 90 (525)
T TIGR02231 76 LRKQIRELEAELRDL 90 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 281
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.23 E-value=4e+02 Score=27.39 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=6.9
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKS 196 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrq 196 (338)
+.+.++.+...+|.+++++
T Consensus 375 ~~~~~l~~~~~~l~~~~~~ 393 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKE 393 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 282
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.18 E-value=1.8e+02 Score=27.40 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=13.9
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERV 194 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErl 194 (338)
++|.+-+.|||.+..+.+.|++++
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555666666665555555554
No 283
>PF14282 FlxA: FlxA-like protein
Probab=27.98 E-value=3.1e+02 Score=22.80 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=35.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH-HH---HHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 019604 177 EDEIEKIGKLNWALEERVKSLCI-EN---QIWRDLAQSNEATANALRTNLEQVLASAA 230 (338)
Q Consensus 177 E~EiEr~~r~n~ELEErlrql~~-E~---q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~~ 230 (338)
+..|+++.++...|++.|+.|.. +. ..=+...+.-.+-...|.+.|.++..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788877888888888888877 22 23344555555666677777777766554
No 284
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.91 E-value=3e+02 Score=21.65 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWR 205 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq 205 (338)
..+.....|++....+|.+|.+.-..|..|++--+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455667888888888889988888988888776
No 285
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=27.67 E-value=4.9e+02 Score=24.63 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=39.9
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
..++.|..|++. .+..+.+...|++.|+.+...-++....||..|..+
T Consensus 59 ~~~~~K~~ELE~-------ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 59 DSLRTKQLELEV-------CENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHhhHhHHH-------hHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 457778888887 677778888899999999888888888888888776
No 286
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.66 E-value=5.7e+02 Score=24.73 Aligned_cols=34 Identities=26% Similarity=0.638 Sum_probs=18.5
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCC
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKS 327 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~ 327 (338)
.+..|..|+- .+|=.|+..=.. ...+-.||-|..
T Consensus 196 ~g~~C~GC~m------~l~~~~~~~V~~-~d~iv~CP~CgR 229 (239)
T COG1579 196 EGRVCGGCHM------KLPSQTLSKVRK-KDEIVFCPYCGR 229 (239)
T ss_pred cCCcccCCee------eecHHHHHHHhc-CCCCccCCccch
Confidence 3567888864 334444422222 334568888864
No 287
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=27.58 E-value=37 Score=36.85 Aligned_cols=41 Identities=29% Similarity=0.566 Sum_probs=31.1
Q ss_pred CCcccccccccccCcceEEeCCCCcccch--hHHhcC-----------CCCCCCCCCCC
Q 019604 285 SGGSRLCRNCRKEESCVLLLPCRHLCLCT--VCGSSL-----------HTCPVCKSPKT 330 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLlPCrHlclC~--~C~~~l-----------~~CPvCR~~i~ 330 (338)
.+-...|.+++.+ +.+||++. .|+ .|...+ ..||+|...+.
T Consensus 303 ~~vSL~CPl~~~R----m~~P~r~~-~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 303 LRVSLNCPLSKMR----MSLPARGH-TCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ceeEecCCcccce----eecCCccc-ccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 4456789998865 55799988 777 787663 69999987653
No 288
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=27.47 E-value=25 Score=25.94 Aligned_cols=12 Identities=17% Similarity=0.471 Sum_probs=6.5
Q ss_pred Cccccccccccc
Q 019604 286 GGSRLCRNCRKE 297 (338)
Q Consensus 286 ~~~~~C~vC~~~ 297 (338)
.....|.+|...
T Consensus 32 p~~w~CP~C~a~ 43 (50)
T cd00730 32 PDDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCCc
Confidence 345566666543
No 289
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=27.47 E-value=2.2e+02 Score=19.85 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 019604 192 ERVKSLCIENQIWRDLAQSNEATANALRTNLEQ 224 (338)
Q Consensus 192 Erlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ 224 (338)
.+|+.+..=|+-|+.--.+.|+-|-+|.+.|..
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 467777788999999999999999999887754
No 290
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=27.32 E-value=1.1e+02 Score=33.71 Aligned_cols=59 Identities=20% Similarity=0.401 Sum_probs=38.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh-------hhHHHHHHHH
Q 019604 134 DIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGK-------LNWALEERVK 195 (338)
Q Consensus 134 EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r-------~n~ELEErlr 195 (338)
|+-.=+.-+.+.+.++|++.+++|.+.|-+ +.+ ...|+++|.||-.+.. .-|-||-||.
T Consensus 364 eF~kRV~~~ia~~~AEIekmK~~Hak~m~k-~k~--~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 364 EFRKRVAKKIADMNAEIEKMKARHAKRMAK-FKR--NSLLKDAEKELRDAVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHhccCCccccCccceeeccccc
Confidence 444556677888889999999999976532 222 2456667777765544 3466776666
No 291
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=27.30 E-value=4e+02 Score=27.49 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 019604 163 DVIEEGVMKKLKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 163 ~avE~~v~~rLReKE~EiEr~~r~n~ELE 191 (338)
...|+.+..+++++..+|++..++-.++|
T Consensus 334 ~~~E~~l~~e~~~~n~~Le~~~~~l~~~e 362 (373)
T COG5019 334 EELEQNLIEERKELNSKLEEIQKKLEDLE 362 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 292
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.27 E-value=1.5e+02 Score=24.90 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 019604 186 LNWALEERVKSLCIENQIWRDLAQSN 211 (338)
Q Consensus 186 ~n~ELEErlrql~~E~q~Wq~~Ak~n 211 (338)
.+.+|+..+++|.+|+...+..+..-
T Consensus 79 ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 79 QIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34459999999999999876655433
No 293
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.23 E-value=3.9e+02 Score=22.76 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019604 144 EKVRMEVEERKKRQVRIIMDVIE 166 (338)
Q Consensus 144 ErLR~~L~E~R~rq~r~ll~avE 166 (338)
.-.|..++.+-+.+....|+.++
T Consensus 32 ~~~~~evE~~~r~~~q~~lnkLD 54 (103)
T COG2960 32 QEVRAEVEKAFRAQLQRQLNKLD 54 (103)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Confidence 34455555555555555555443
No 294
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.99 E-value=7.9e+02 Score=26.16 Aligned_cols=32 Identities=34% Similarity=0.297 Sum_probs=19.9
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~A 208 (338)
.++=|+|..|+|+ |+-|+.+|..|+-..+..+
T Consensus 289 ~k~eReasle~En-------lqmr~qqleeentelRs~~ 320 (502)
T KOG0982|consen 289 IKKEREASLEKEN-------LQMRDQQLEEENTELRSLI 320 (502)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3445666666666 6666777777776665443
No 295
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=26.99 E-value=2.7e+02 Score=27.59 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=30.1
Q ss_pred CcccchhhHHHHHHHHHHHH--HHHHHHh------------HHHHHHHHHHHHHHH
Q 019604 116 PFSFLGNDMSFQIQEQQFDI--DRLISQH------------MEKVRMEVEERKKRQ 157 (338)
Q Consensus 116 ~~s~l~~~l~~ql~qQ~~EI--D~~i~~q------------~ErLR~~L~E~R~rq 157 (338)
....+.|++..-++.|-.|+ |+|-+.+ .|+|-+.|+|.++|-
T Consensus 152 ~~~~~aDgv~~FihHQivElARDCL~KS~~~lITs~YF~ElsEnLekLl~ea~erS 207 (282)
T PF08926_consen 152 NVLPLADGVLRFIHHQIVELARDCLQKSREGLITSRYFYELSENLEKLLQEAHERS 207 (282)
T ss_dssp TTB--S-HHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcccCC
Confidence 34568899999999999999 9988877 566666666666655
No 296
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=26.68 E-value=27 Score=41.93 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=33.9
Q ss_pred cccccccccccC---cceEEeCCCCcccchhHHhcC--------------CCCCCCCCCCCceE
Q 019604 287 GSRLCRNCRKEE---SCVLLLPCRHLCLCTVCGSSL--------------HTCPVCKSPKTVSV 333 (338)
Q Consensus 287 ~~~~C~vC~~~~---~~vvLlPCrHlclC~~C~~~l--------------~~CPvCR~~i~~~V 333 (338)
...+|.||+... +-.+-|-|+|. +=..|...+ -.||+|..+|+-++
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 356899999853 55677889998 666665442 58999999987643
No 297
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.62 E-value=1e+03 Score=27.23 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019604 165 IEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNE 212 (338)
Q Consensus 165 vE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nE 212 (338)
+.-..-.+|.|-...+|-+..+|.||-.-+..+.-|++......+..+
T Consensus 435 lN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd 482 (861)
T PF15254_consen 435 LNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKD 482 (861)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666666666666666666666666666666665554443
No 298
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=26.58 E-value=9.5e+02 Score=26.95 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 019604 142 HMEKVRMEVEERKKRQVRIIMDVIEEGV--MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALR 219 (338)
Q Consensus 142 q~ErLR~~L~E~R~rq~r~ll~avE~~v--~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr 219 (338)
+..+|+..|...|..+...--..-+... ...+......+....+...+-++++..|..|.+.-..+|..+.+..++.+
T Consensus 367 Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQ 446 (717)
T PF09730_consen 367 EVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQ 446 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556666676666555432222211111 12223333334444444444566889999999999999988888777777
Q ss_pred hhHHHH
Q 019604 220 TNLEQV 225 (338)
Q Consensus 220 ~~LeQ~ 225 (338)
..|..+
T Consensus 447 DELvtf 452 (717)
T PF09730_consen 447 DELVTF 452 (717)
T ss_pred HHHHHH
Confidence 666544
No 299
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.52 E-value=5.9e+02 Score=24.55 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=24.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 019604 136 DRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKL 186 (338)
Q Consensus 136 D~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~ 186 (338)
++-|..+.-+|-+.|+-+|+++- +.+.-.|=|+-|+||+...|+
T Consensus 156 k~av~~~~mklfae~erkRk~~e-------~r~~~eRkr~re~eIeaeek~ 199 (250)
T KOG1150|consen 156 KQAVYKQVMKLFAELERKRKELE-------ARANEERKRQREEEIEAEEKR 199 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHH
Confidence 33445555566666666555433 222334556677777776444
No 300
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=26.52 E-value=6.5e+02 Score=25.05 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 019604 142 HMEKVRMEVEE 152 (338)
Q Consensus 142 q~ErLR~~L~E 152 (338)
.+.||+++++-
T Consensus 67 ~nqrl~~E~e~ 77 (333)
T KOG1853|consen 67 RNQRLTTEQER 77 (333)
T ss_pred HHHHHHHHHHH
Confidence 34455555443
No 301
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.48 E-value=2.3e+02 Score=22.45 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH
Q 019604 128 IQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEE 192 (338)
Q Consensus 128 l~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEE 192 (338)
.+.-+.|++..|+...++.=..|.=..|--. -+-..++.|+|+|=++||. +..+||+
T Consensus 22 ~~~~~~e~e~~~r~~l~~~l~kldlVtREEF-----d~q~~~L~~~r~kl~~LEa---rl~~LE~ 78 (79)
T PF04380_consen 22 AQGPREEIEKNIRARLQSALSKLDLVTREEF-----DAQKAVLARTREKLEALEA---RLAALEA 78 (79)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHCCCCcHHHH-----HHHHHHHHHHHHHHHHHHH---HHHHHhc
Confidence 3556667777777776655443332222222 1223444555555444443 5555665
No 302
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.44 E-value=4.4e+02 Score=23.09 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--
Q 019604 143 MEKVRMEVEERKKRQVRIIMDVIEEGVM---KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANA-- 217 (338)
Q Consensus 143 ~ErLR~~L~E~R~rq~r~ll~avE~~v~---~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~-- 217 (338)
+..||.....+--|-- .+|..+. .++.++|.||..+.++|.-||..|.++...-+.-...+...+.....
T Consensus 2 m~~lk~E~d~a~~r~e-----~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAE-----ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q ss_pred -HHhhHHHH
Q 019604 218 -LRTNLEQV 225 (338)
Q Consensus 218 -Lr~~LeQ~ 225 (338)
|...++++
T Consensus 77 ~l~rriq~L 85 (143)
T PF12718_consen 77 QLNRRIQLL 85 (143)
T ss_pred HHHhhHHHH
No 303
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=26.28 E-value=44 Score=24.88 Aligned_cols=16 Identities=44% Similarity=1.182 Sum_probs=11.7
Q ss_pred cchhHHhc----CCCCCCCC
Q 019604 311 LCTVCGSS----LHTCPVCK 326 (338)
Q Consensus 311 lC~~C~~~----l~~CPvCR 326 (338)
+|.+|... |..||.|.
T Consensus 31 FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 31 FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp B-HHHHHTTTTTS-SSSTT-
T ss_pred cccCcChhhhccccCCcCCC
Confidence 99999987 48999995
No 304
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.20 E-value=38 Score=21.74 Aligned_cols=18 Identities=33% Similarity=0.942 Sum_probs=10.6
Q ss_pred chhHHhcC----CCCCCCCCCC
Q 019604 312 CTVCGSSL----HTCPVCKSPK 329 (338)
Q Consensus 312 C~~C~~~l----~~CPvCR~~i 329 (338)
|.+|...+ ..||.|.-.+
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCCC
Confidence 55555553 6777776543
No 305
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=25.99 E-value=80 Score=30.99 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 019604 185 KLNWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 185 r~n~ELEErlrql~~E~q~Wq~~A 208 (338)
....+|+++|++|..|.+.|..+.
T Consensus 164 ~~i~~Lee~I~rLk~E~~~W~~~l 187 (301)
T PF08202_consen 164 ENIAELEEKIKRLKEERQAWAQLL 187 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345789999999999999997776
No 306
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.96 E-value=2.9e+02 Score=29.34 Aligned_cols=18 Identities=0% Similarity=0.010 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 019604 165 IEEGVMKKLKAKEDEIEK 182 (338)
Q Consensus 165 vE~~v~~rLReKE~EiEr 182 (338)
......+||.++|.|+++
T Consensus 98 q~~dle~KIkeLEaE~~~ 115 (475)
T PRK13729 98 QRGDDQRRIEKLGQDNAA 115 (475)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 333344555566666665
No 307
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=25.89 E-value=45 Score=30.44 Aligned_cols=43 Identities=19% Similarity=0.434 Sum_probs=26.7
Q ss_pred cccccccccccCcceEEeCCCCccc----chhHHhc------CCCCCCCCCCCC
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCL----CTVCGSS------LHTCPVCKSPKT 330 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlcl----C~~C~~~------l~~CPvCR~~i~ 330 (338)
..+.|.||++.... ...||+-... =.+|-.. -..|++|..+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 45789999988653 3456642210 1235444 279999998763
No 308
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.82 E-value=7.5e+02 Score=25.52 Aligned_cols=43 Identities=7% Similarity=0.048 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019604 163 DVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWR 205 (338)
Q Consensus 163 ~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq 205 (338)
..++......+.+.+.|++.+.+....|+..+.++..+-..+.
T Consensus 205 ~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 205 EEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455666677777777777777777777766666654
No 309
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.77 E-value=3.3e+02 Score=21.35 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019604 167 EGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQS 210 (338)
Q Consensus 167 ~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~ 210 (338)
....++||.+..|.+.. ..+|..++..+..+...-+.++..
T Consensus 32 ~~~IKKLr~~~~e~e~~---~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQ---IKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35668888888888864 344777777777777766666544
No 310
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.75 E-value=1.3e+02 Score=28.92 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019604 123 DMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVR 159 (338)
Q Consensus 123 ~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r 159 (338)
+|..||++.+.||++ ||=++|++...|++..+||--
T Consensus 58 ~l~~ql~~lq~ev~~-LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 58 QLQQQLSDNQSDIDS-LRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 578889999999988 488888888888887777654
No 311
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=25.67 E-value=3.7e+02 Score=22.08 Aligned_cols=9 Identities=56% Similarity=0.881 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 019604 189 ALEERVKSL 197 (338)
Q Consensus 189 ELEErlrql 197 (338)
.|++|++.+
T Consensus 76 ~~~~R~~~i 84 (88)
T PF13300_consen 76 ELEERLKKI 84 (88)
T ss_pred HHHHHHHHH
Confidence 344444443
No 312
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.54 E-value=8.4e+02 Score=26.02 Aligned_cols=44 Identities=9% Similarity=-0.024 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 019604 187 NWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLASAA 230 (338)
Q Consensus 187 n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~~ 230 (338)
+..+..+..++....+.-...-++.+..++.|..+|--++....
T Consensus 409 ~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 409 IKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 33445555666666666666666778888888888887775543
No 313
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=25.47 E-value=1.6e+02 Score=25.82 Aligned_cols=11 Identities=45% Similarity=0.504 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 019604 144 EKVRMEVEERK 154 (338)
Q Consensus 144 ErLR~~L~E~R 154 (338)
++|+.+|+..+
T Consensus 8 ~~L~~el~~L~ 18 (151)
T TIGR01462 8 EKLKEELEYLK 18 (151)
T ss_pred HHHHHHHHHHH
Confidence 34555555444
No 314
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=25.45 E-value=4e+02 Score=24.01 Aligned_cols=41 Identities=27% Similarity=0.273 Sum_probs=20.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHhh
Q 019604 181 EKIGKLNWALEERVKSLCIENQ-IWRDLAQSNEATANALRTN 221 (338)
Q Consensus 181 Er~~r~n~ELEErlrql~~E~q-~Wq~~Ak~nEA~a~~Lr~~ 221 (338)
+.+++.|=|+++++..|...-| .|+.+..+-+.++..|..+
T Consensus 77 ~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 77 EKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSEN 118 (155)
T ss_dssp HGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555 5565555555555444443
No 315
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=25.44 E-value=5.4e+02 Score=24.74 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=56.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 120 LGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 120 l~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
...++...|++--.|+|+=|+..-+||...-++.-. ..+....++|.+.+++|.. |-+.+.+|..
T Consensus 80 YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~--------~~~~~~~~~i~~l~~~I~~-------ll~~aE~LGe 144 (254)
T PF03194_consen 80 YEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQAK--------EADEEKAEKIDELDEKIGE-------LLKEAEELGE 144 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc--------chhhhHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 566788889999999999998888888665554331 1122124555556655555 6667778887
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 019604 200 ENQIWRDLAQSNEATANALRTNLEQVLA 227 (338)
Q Consensus 200 E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~ 227 (338)
|++.=...+.. +.|..|+...+++..
T Consensus 145 eG~VdeA~~~~--~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 145 EGDVDEAQKLM--EEVEKLKEEKEELEK 170 (254)
T ss_pred CCCHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 77765444333 334555555555544
No 316
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=25.31 E-value=1.9e+02 Score=29.15 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 183 IGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 183 ~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
+.|.+|||++| ++|..+-+.++..=+.-.+.....+..|..+
T Consensus 93 l~RL~~EL~~R-k~L~~~~~el~~~k~~l~~~~~~k~~~L~~l 134 (355)
T PF09766_consen 93 LARLEFELEQR-KRLEEQLKELEQRKKKLQQENKKKKKFLDSL 134 (355)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 317
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=25.30 E-value=3.2e+02 Score=30.09 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019604 148 MEVEERKKRQVRIIMDVIEEGVMKKLKA 175 (338)
Q Consensus 148 ~~L~E~R~rq~r~ll~avE~~v~~rLRe 175 (338)
.-++|.|.|..| +-.++|+.-..||+.
T Consensus 627 ~RirE~rerEqR-~~a~~ERee~eRl~~ 653 (940)
T KOG4661|consen 627 QRIREEREREQR-RKAAVEREELERLKA 653 (940)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 334455544444 234677665555443
No 318
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.18 E-value=3.9e+02 Score=28.02 Aligned_cols=68 Identities=28% Similarity=0.309 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 132 QFDIDRLISQHMEKVRMEVEERKKR-----QVR---IIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~~L~E~R~r-----q~r---~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
--++|+++.+-+|+.---|+-+.|. .+. ..|---|.++-.-|++|+.|++.+.+.|..||+.|.....
T Consensus 537 apdmdqiwsi~mek~dd~lq~~q~aekalrfyeiefe~ll~~e~aaee~lk~~~del~s~~~~~h~ledeles~r~ 612 (637)
T KOG4421|consen 537 APDMDQIWSIFMEKFDDLLQLKQQAEKALRFYEIEFEHLLNCEEAAEEELKAKDDELASLGGALHMLEDELESTRI 612 (637)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3366778887777765544432221 110 1222334556677899999999999999888887766543
No 319
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.96 E-value=7.8e+02 Score=25.40 Aligned_cols=12 Identities=0% Similarity=-0.050 Sum_probs=4.9
Q ss_pred HHhhHHHHHHHh
Q 019604 173 LKAKEDEIEKIG 184 (338)
Q Consensus 173 LReKE~EiEr~~ 184 (338)
.||..+++....
T Consensus 168 nrELaE~layqq 179 (401)
T PF06785_consen 168 NRELAEALAYQQ 179 (401)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 320
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.95 E-value=3.7e+02 Score=21.71 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=41.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH----------HHHHHHHH
Q 019604 138 LISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCI----------ENQIWRDL 207 (338)
Q Consensus 138 ~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~----------E~q~Wq~~ 207 (338)
||+..-|.++..|..+. .....|..+-.-- .+.|+.-.+++.++.+-.++-..+.++.. |...+...
T Consensus 6 ~ir~n~e~v~~~l~~R~--~~~~~vd~i~~ld-~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 6 LIRENPEEVRENLKKRG--GDEEDVDEIIELD-QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEE 82 (108)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHcC--CCHhhHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHH
Confidence 45556666666555322 2223333332222 22355556666655555555555444433 44555555
Q ss_pred HHhhHHHHHHHHhhHHHHH
Q 019604 208 AQSNEATANALRTNLEQVL 226 (338)
Q Consensus 208 Ak~nEA~a~~Lr~~LeQ~l 226 (338)
-..-|.....+...|+..+
T Consensus 83 i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 83 IKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554
No 321
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.89 E-value=8.3e+02 Score=26.01 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.4
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
+.|+-+.|.|+++++..|.-|+++=..|
T Consensus 402 SaRe~eleqevkrLrq~nr~l~eqneel 429 (502)
T KOG0982|consen 402 SAREIELEQEVKRLRQPNRILSEQNEEL 429 (502)
T ss_pred hHHHHHHHHHHHHhccccchhhhhhhhh
Confidence 3677888888888888877777664443
No 322
>PLN03184 chloroplast Hsp70; Provisional
Probab=24.81 E-value=9.4e+02 Score=26.28 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019604 144 EKVRMEVEERKKRQVRIIMDVIEEGV 169 (338)
Q Consensus 144 ErLR~~L~E~R~rq~r~ll~avE~~v 169 (338)
++.++.++|+| ....+++-.++..+
T Consensus 558 D~~~~~~~eak-N~lE~~iy~~r~~l 582 (673)
T PLN03184 558 DKEKRDAVDTK-NQADSVVYQTEKQL 582 (673)
T ss_pred hHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 34444444433 24455555555544
No 323
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.77 E-value=9e+02 Score=26.07 Aligned_cols=26 Identities=12% Similarity=0.076 Sum_probs=11.3
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
.+.+++.+.+...+++.+++++....
T Consensus 447 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 447 LLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 324
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=24.58 E-value=6.2e+02 Score=24.13 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 121 GNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIE--EGVMKKLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 121 ~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE--~~v~~rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
..+-+..|..+...... -+...++-+..+++..++=-.......+ .....++++++.+|.+ |++-...-.
T Consensus 31 ~e~~a~~Leek~k~aee-ea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~-------l~ee~~~ke 102 (246)
T PF00769_consen 31 SEETAEELEEKLKQAEE-EAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIAR-------LEEESERKE 102 (246)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 019604 199 IENQIWRDLAQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 199 ~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
.|+..|+..+..-...-.--+..|.-++...
T Consensus 103 ~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 103 EEAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 325
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=24.57 E-value=2e+02 Score=31.72 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=18.1
Q ss_pred HHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 168 GVMKKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 168 ~v~~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
.|.+++.+-.+|||||.++.+..-+++|+.
T Consensus 368 RV~~~ia~~~AEIekmK~~Hak~m~k~k~~ 397 (669)
T PF08549_consen 368 RVAKKIADMNAEIEKMKARHAKRMAKFKRN 397 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344666666777777776666555554443
No 326
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=24.37 E-value=2.1e+02 Score=24.53 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 150 VEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 150 L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
++++-+|+++-++.-.+-.-..-+-+..++|+. |+++|+.|..
T Consensus 62 ~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~-------Lerqv~~Len 104 (108)
T COG3937 62 LEEKIPRKIEEMLSDLEVARQSEMDELTERVDA-------LERQVADLEN 104 (108)
T ss_pred HHHhhhHHHHHHHhhccccccchHHHHHHHHHH-------HHHHHHHHHH
Confidence 334444555555554441111113333444444 6666666543
No 327
>PRK14139 heat shock protein GrpE; Provisional
Probab=24.28 E-value=1.4e+02 Score=27.76 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019604 132 QFDIDRLISQHMEKVRMEVEERKKRQVR 159 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~~L~E~R~rq~r 159 (338)
..+++. +..+.+.|+..+.+.+.+..|
T Consensus 31 ~~e~~~-l~~~l~~le~e~~elkd~~lR 57 (185)
T PRK14139 31 EDAAPA-LEAELAEAEAKAAELQDSFLR 57 (185)
T ss_pred chhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345544 334566666666666555443
No 328
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.23 E-value=3e+02 Score=20.39 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=10.8
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
.+.+.+++.+...|..|...+..|..|
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444334444444444443333
No 329
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=24.23 E-value=4.7e+02 Score=22.64 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 122 NDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 122 ~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
+||..-++.|..++..+ +...+.+...|.+- ++|.... -..|+++.+++.+|.-|+=++-.=.
T Consensus 33 ~dL~~R~~~Q~~~~~~~-~~~l~~i~~~l~~L-~~~~~~~---------------~~rl~~~r~r~~~L~hR~l~v~~~~ 95 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQH-RERLKEINDKLEEL-QKHDLET---------------SARLEEARRRHQELSHRLLRVLRKQ 95 (141)
T ss_dssp -------------HHHH-HHHHHHHHHHHHHH-HHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888887777643 22333344444444 3332222 2234455555566665554444333
Q ss_pred HHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 019604 202 QIWRDLAQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 202 q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
+.-+.+...-...-..|+..|+++..+.
T Consensus 96 eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 96 EILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHH-----------------------
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333332222222234666666666544
No 330
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.20 E-value=6.5e+02 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.315 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019604 123 DMSFQIQEQQFDIDRLISQHMEKVRMEVEERK 154 (338)
Q Consensus 123 ~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R 154 (338)
++...|++...-+.+.++...++.+..|....
T Consensus 147 ~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~ 178 (319)
T PF02601_consen 147 ELLQRLDELRQRLNRAMRNRLQRKRQRLNQLA 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666555554444444433
No 331
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=23.91 E-value=5.5e+02 Score=23.26 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=10.2
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 019604 183 IGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 183 ~~r~n~ELEErlrql~~E~q 202 (338)
.+-.+..||++++.|..||.
T Consensus 156 L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555554
No 332
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=23.86 E-value=51 Score=33.21 Aligned_cols=45 Identities=29% Similarity=0.717 Sum_probs=35.1
Q ss_pred ccccccccc----cCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceE
Q 019604 288 SRLCRNCRK----EESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSV 333 (338)
Q Consensus 288 ~~~C~vC~~----~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V 333 (338)
...|.+|.+ .....+=.||+|. +|-.|-... ..||+||.+.....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 367999998 4466666788999 999998875 79999998766543
No 333
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=23.69 E-value=4.3e+02 Score=21.99 Aligned_cols=19 Identities=11% Similarity=0.371 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 019604 133 FDIDRLISQHMEKVRMEVE 151 (338)
Q Consensus 133 ~EID~~i~~q~ErLR~~L~ 151 (338)
.++|..|.-...+.+....
T Consensus 11 ~ev~~~i~k~~~~~~~~~~ 29 (125)
T PF14265_consen 11 EEVDKIIKKRLARWEKKQK 29 (125)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3477777655555554443
No 334
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.68 E-value=1.6e+02 Score=23.68 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=11.4
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 175 AKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 175 eKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
+.+++|+.+..+...++.++.-+...-..|
T Consensus 74 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 74 ELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333444444444443333
No 335
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.64 E-value=6e+02 Score=23.62 Aligned_cols=14 Identities=7% Similarity=0.257 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 019604 124 MSFQIQEQQFDIDR 137 (338)
Q Consensus 124 l~~ql~qQ~~EID~ 137 (338)
+...|...+.+|..
T Consensus 18 ~~~~L~~~~~~l~~ 31 (302)
T PF10186_consen 18 VNNRLLELRSELQQ 31 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 336
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=23.55 E-value=2e+02 Score=22.65 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019604 129 QEQQFDIDRLISQHMEKVRMEVEERK 154 (338)
Q Consensus 129 ~qQ~~EID~~i~~q~ErLR~~L~E~R 154 (338)
++-+.|+++|....-..+...|+++|
T Consensus 12 ~~L~~EL~~L~~~~rpe~~~~i~~Ar 37 (74)
T PF03449_consen 12 EKLQAELEHLKNVERPEIAEEIAEAR 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455666666555445444444443
No 337
>PRK01343 zinc-binding protein; Provisional
Probab=23.55 E-value=40 Score=25.76 Aligned_cols=11 Identities=45% Similarity=1.168 Sum_probs=5.4
Q ss_pred CCCCCCCCCCC
Q 019604 320 HTCPVCKSPKT 330 (338)
Q Consensus 320 ~~CPvCR~~i~ 330 (338)
..||+|+.+..
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 34555555443
No 338
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=23.55 E-value=88 Score=32.91 Aligned_cols=30 Identities=50% Similarity=0.495 Sum_probs=25.4
Q ss_pred HHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 168 GVMKKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 168 ~v~~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
...+.|-++|+|-|++.+||.+|+++++.-
T Consensus 194 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 223 (476)
T PRK06278 194 NFLKYLKIKEDEKEEIFKKNKILKEKLKSR 223 (476)
T ss_pred HHHHHcCCChHHHHHHHHHhHHHHHHHHHH
Confidence 344677889999999999999999998763
No 339
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=23.47 E-value=1e+03 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019604 122 NDMSFQIQEQQFDIDRLISQHMEKVRME 149 (338)
Q Consensus 122 ~~l~~ql~qQ~~EID~~i~~q~ErLR~~ 149 (338)
+.+-.+|+.|+..+..+|..-.|+.|-.
T Consensus 328 dql~~~l~d~k~~~~~~~~~aiEk~Rl~ 355 (657)
T KOG1854|consen 328 DQLQKELEDQKADEELHIKRAIEKQRLQ 355 (657)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 4477788888888888888888877766
No 340
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.23 E-value=5.8e+02 Score=23.35 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=22.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
+|-...-.+..+|++++++|..|-+.+. ..+-..+..|+..+..+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~---~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYS---ENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHH
Confidence 4444444555556666666666655332 223344444444444433
No 341
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=23.08 E-value=3.4e+02 Score=20.61 Aligned_cols=46 Identities=26% Similarity=0.414 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 019604 133 FDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKL 186 (338)
Q Consensus 133 ~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~ 186 (338)
.-||.||.. ||.-|+++.. .|+.-+..--.+-|..+-.++|.+.|+
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk~----Eil~~ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKKS----EILSNLNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred hhHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777765 5666666653 344455554555566666666665443
No 342
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=23.03 E-value=1.1e+03 Score=26.46 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=25.5
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
+.+.+.+++.+.....+++..+..+..+...|+..-...+.....++..++++
T Consensus 870 ~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l 922 (1164)
T TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555554444444444444444433
No 343
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=23.03 E-value=7.2e+02 Score=24.51 Aligned_cols=73 Identities=11% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 124 MSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVR-IIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r-~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
|..-++.++.=++++|....++ .++|.+... .|...+-..++-+ +....+-+...+.-.++++.||+.+...+
T Consensus 32 l~~Ll~~~~~~L~rli~~~~~~-----~~~r~~~Aa~~IA~lL~d~aa~r-~~~~~~~~~~~~~~~~~q~~vRq~E~~~~ 105 (292)
T PF11981_consen 32 LATLLPDWRPPLQRLIDARRRQ-----WQQRRQAAARLIAELLIDAAAYR-RKVPSDEDAEAELVQRLQDAVRQREQQCQ 105 (292)
T ss_pred HHHHhHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566677777655333 222222222 2333333444333 22211111113334457777777766543
No 344
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.84 E-value=9.8e+02 Score=25.80 Aligned_cols=15 Identities=47% Similarity=0.519 Sum_probs=9.9
Q ss_pred HHHHHHHhhhhHHHH
Q 019604 177 EDEIEKIGKLNWALE 191 (338)
Q Consensus 177 E~EiEr~~r~n~ELE 191 (338)
++|+|.-+++|.||.
T Consensus 165 ~~e~e~qr~~n~Elv 179 (630)
T KOG0742|consen 165 EDELEAQRRLNEELV 179 (630)
T ss_pred HHHHHHHHHHhHHHH
Confidence 356666667887775
No 345
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.81 E-value=2.2e+02 Score=21.97 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRD 206 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~ 206 (338)
...+....+++++.++..+|++.-.+|..|-..|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346677788888777777788877788877777743
No 346
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.79 E-value=1.3e+03 Score=27.13 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=13.4
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
.++.++.+++.+..........+..+..
T Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 497 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQNQAQQAVEELQA 497 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444444433
No 347
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=22.75 E-value=4.6e+02 Score=22.65 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 135 IDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 135 ID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
||.-|..|.+-|-+.+++.|.---+ +-+++...| ..+.+|.-||++|+..|+
T Consensus 2 ~~a~~~~q~~~l~~~v~~lRed~r~----SEdrsa~SR--------a~mhrRlDElV~Rv~~lE 53 (112)
T PF07439_consen 2 IDAGLHQQLGTLNAEVKELREDIRR----SEDRSAASR--------ASMHRRLDELVERVTTLE 53 (112)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhh--------HHHHHhHHHHHHHHHHHH
Confidence 4555666666666666666632222 222222222 456677777777777774
No 348
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=22.73 E-value=3.1e+02 Score=25.27 Aligned_cols=16 Identities=13% Similarity=0.526 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhhH
Q 019604 161 IMDVIEEGVMKKLKAKE 177 (338)
Q Consensus 161 ll~avE~~v~~rLReKE 177 (338)
.++-+|+.+ .+||+|-
T Consensus 41 avSL~erQ~-~~LR~~~ 56 (225)
T PF04340_consen 41 AVSLVERQL-ERLRERN 56 (225)
T ss_dssp HHHHHHHHH-HHHHHHH
T ss_pred cccHHHHHH-HHHHHHH
Confidence 445555432 3334433
No 349
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.67 E-value=6.2e+02 Score=23.48 Aligned_cols=82 Identities=9% Similarity=0.179 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019604 122 NDMSFQIQEQQFDIDRLISQHMEKVR------------------------MEVEERKKRQVRIIMDVIEEGVMKKLKAKE 177 (338)
Q Consensus 122 ~~l~~ql~qQ~~EID~~i~~q~ErLR------------------------~~L~E~R~rq~r~ll~avE~~v~~rLReKE 177 (338)
+-|+.+|+++-.|.+.+|......|. ..|+..+..-. -+..+-..+..-|.+|.
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~--~a~~~a~~AQ~el~eK~ 143 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLA--NAEQVAEGAQQELAEKT 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 45778999999999999876533332 22222211100 01111123334566666
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCIENQIWR 205 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~E~q~Wq 205 (338)
.-|+.+.+|-..|..+|.....+.+.-+
T Consensus 144 qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 144 QLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555554433
No 350
>PF13166 AAA_13: AAA domain
Probab=22.52 E-value=9.7e+02 Score=25.65 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=23.3
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
++...+.+|+.+.+....++..++.+..+...-+..-...+..+..+...|...
T Consensus 418 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 418 EIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444445554444444444444444444333333333344444444444433
No 351
>PRK14148 heat shock protein GrpE; Provisional
Probab=22.36 E-value=2.2e+02 Score=26.59 Aligned_cols=27 Identities=11% Similarity=0.307 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019604 132 QFDIDRLISQHMEKVRMEVEERKKRQVR 159 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~~L~E~R~rq~r 159 (338)
..|++. +....+.|+..+++.+.+..|
T Consensus 39 ~~e~~~-l~~~l~~l~~e~~elkd~~lR 65 (195)
T PRK14148 39 EEQLER-AKDTIKELEDSCDQFKDEALR 65 (195)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334555 445566666666666555544
No 352
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.18 E-value=5.1e+02 Score=22.31 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=25.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 019604 141 QHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELE 191 (338)
.+.+.|+..+++..+||... ..-|=||.++++-+.-...+|.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~---------LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTL---------LELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHhcchHHHHHHHHHHHHHHH
Confidence 44566777777777777643 3556778888777444333333
No 353
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=22.12 E-value=3.8e+02 Score=22.06 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHH
Q 019604 120 LGNDMSFQIQEQQFDIDRLISQHME 144 (338)
Q Consensus 120 l~~~l~~ql~qQ~~EID~~i~~q~E 144 (338)
+-..|.+|.++|..-|-+|+++..+
T Consensus 3 VH~aItaH~~Kq~~~~k~F~~Le~~ 27 (84)
T PF10752_consen 3 VHKAITAHSQKQHAIIKQFLQLEQQ 27 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999887643
No 354
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.03 E-value=30 Score=25.19 Aligned_cols=10 Identities=40% Similarity=1.202 Sum_probs=4.0
Q ss_pred CCCCCCCCCC
Q 019604 321 TCPVCKSPKT 330 (338)
Q Consensus 321 ~CPvCR~~i~ 330 (338)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6777776654
No 355
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.92 E-value=40 Score=33.96 Aligned_cols=38 Identities=26% Similarity=0.641 Sum_probs=28.7
Q ss_pred cccccccccCcceEEeC-CCCcccchhHHhcC-----CCCCCCCC
Q 019604 289 RLCRNCRKEESCVLLLP-CRHLCLCTVCGSSL-----HTCPVCKS 327 (338)
Q Consensus 289 ~~C~vC~~~~~~vvLlP-CrHlclC~~C~~~l-----~~CPvCR~ 327 (338)
..|..|..--++-+=-| |+|. +|.+|.... ..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 68999987665555555 4566 999999852 69999976
No 356
>PHA02107 hypothetical protein
Probab=21.87 E-value=2e+02 Score=26.74 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 164 VIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 164 avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
-+=--.+.||.|-|+||.++.-+..|.|+-++.+
T Consensus 177 G~~~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~I 210 (216)
T PHA02107 177 GVFHFASVRISEIDEEIKELQARRKEIEDNIKSI 210 (216)
T ss_pred HHhhhhhhhHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334557899999999999888778888777654
No 357
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=21.84 E-value=6e+02 Score=22.99 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=19.7
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
+.||.|..++..+..+-++++++++.
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME~ 126 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEMER 126 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999988887777777766654
No 358
>PRK14157 heat shock protein GrpE; Provisional
Probab=21.79 E-value=2.5e+02 Score=26.92 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 019604 175 AKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATA 215 (338)
Q Consensus 175 eKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a 215 (338)
..+.+|+.+.++..+|.+++.++.+|.+..+.+++.....+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~ 121 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF 121 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 359
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.63 E-value=6.3e+02 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=10.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 183 IGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 183 ~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
+..+..+|++....|..+...|+..
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 360
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=21.60 E-value=6.8e+02 Score=24.83 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhH
Q 019604 189 ALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLASAAA 231 (338)
Q Consensus 189 ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~~~ 231 (338)
.||++++.+-.+++.- ++.+.-|+..+.|..+++..
T Consensus 231 rLEdkv~~lk~~n~~L-------~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 231 RLEDKVKTLKIYNRDL-------ASELSKLKEQVAELKQKVME 266 (279)
T ss_pred HHHhhhhhhhhhhhhH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3899998888888765 66677777777777766643
No 361
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=21.44 E-value=4.6e+02 Score=24.43 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019604 148 MEVEERKKRQVRIIMDVI 165 (338)
Q Consensus 148 ~~L~E~R~rq~r~ll~av 165 (338)
.+++.+|+|....+=+.+
T Consensus 83 Ea~eaAR~RmQEE~dakA 100 (190)
T PF06936_consen 83 EAMEAARRRMQEELDAKA 100 (190)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666554443333
No 362
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.39 E-value=1e+03 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhhhhHHHH
Q 019604 154 KKRQVRIIMDVIEEGVMKK--LKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 154 R~rq~r~ll~avE~~v~~r--LReKE~EiEr~~r~n~ELE 191 (338)
.++|...+|+.-|.++.++ +|-.-+|-+.+.++.-|+|
T Consensus 171 qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~e 210 (630)
T KOG0742|consen 171 QRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEME 210 (630)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Confidence 3566778888888888765 4433344444444444443
No 363
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.34 E-value=2.3e+02 Score=29.10 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHhhHHHH
Q 019604 163 DVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQS------NEATANALRTNLEQV 225 (338)
Q Consensus 163 ~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~------nEA~a~~Lr~~LeQ~ 225 (338)
+++-++=-.++.+.+++||++.+-+-|.|- .++|..+|.+ .|....+++.+.+..
T Consensus 74 ~~m~~~neeki~eld~~iedaeenlGE~ev--------~ea~~~kaeYycqigDkena~~~~~~t~~kt 134 (393)
T KOG0687|consen 74 NSMKKANEEKIKELDEKIEDAEENLGESEV--------REAMLRKAEYYCQIGDKENALEALRKTYEKT 134 (393)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchHHH--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 333333335556666666665554444443 3678777743 334444455554443
No 364
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.32 E-value=1.4e+03 Score=26.94 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHH------HHHHHHHHHHH-HHHHHHHhhHHHHHHHhhhhHHHHHHHH-------HHHHHHHHH
Q 019604 139 ISQHMEKVRMEVEERKKR------QVRIIMDVIEE-GVMKKLKAKEDEIEKIGKLNWALEERVK-------SLCIENQIW 204 (338)
Q Consensus 139 i~~q~ErLR~~L~E~R~r------q~r~ll~avE~-~v~~rLReKE~EiEr~~r~n~ELEErlr-------ql~~E~q~W 204 (338)
+-...||||..|...|.. +=+-...-.|. ....++.+++.||+...+...+|.|.+- .|..+-+..
T Consensus 409 ~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~ 488 (1041)
T KOG0243|consen 409 LYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKL 488 (1041)
T ss_pred HHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHH
Q 019604 205 RDLAQSNEATANALRTNLEQVLAS 228 (338)
Q Consensus 205 q~~Ak~nEA~a~~Lr~~LeQ~l~~ 228 (338)
+..-....-.-..+...++|+...
T Consensus 489 k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 489 KSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 365
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=52 Score=33.41 Aligned_cols=31 Identities=29% Similarity=0.600 Sum_probs=27.2
Q ss_pred cccccccccccCcceEEeCCC--CcccchhHHhc
Q 019604 287 GSRLCRNCRKEESCVLLLPCR--HLCLCTVCGSS 318 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCr--HlclC~~C~~~ 318 (338)
....|..|-+....|+.+||. |. .|-+|...
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr~ 252 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFRL 252 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhhh
Confidence 356899999999999999999 88 89999873
No 366
>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]
Probab=21.09 E-value=1.3e+02 Score=27.08 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019604 132 QFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKL 173 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rL 173 (338)
..++|+|+....|++-.-.-.+.+|....=|..=+-+..+||
T Consensus 26 GVdld~Lldms~~~~~~l~~ar~rrR~~RGL~~k~~~liKkl 67 (152)
T KOG0898|consen 26 GVDLDQLLDMSTEQLVKLFPARQRRRLNRGLTRKPHSLIKKL 67 (152)
T ss_pred CCCHHHHhcCCHHHHHHHHHHHHHHHHHcccccchHHHHHHH
Confidence 357788888888887655554443333322233333334444
No 367
>PRK14155 heat shock protein GrpE; Provisional
Probab=21.05 E-value=2.7e+02 Score=26.26 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019604 142 HMEKVRMEVEERKKRQVR 159 (338)
Q Consensus 142 q~ErLR~~L~E~R~rq~r 159 (338)
..+.|...+.+.+.+..|
T Consensus 21 ~l~~le~e~~elkd~~lR 38 (208)
T PRK14155 21 EIEALKAEVAALKDQALR 38 (208)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555544433
No 368
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.01 E-value=1.2e+03 Score=26.28 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 019604 190 LEERVKSLCIENQIWRDLAQSNEATANALRTNLE 223 (338)
Q Consensus 190 LEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~Le 223 (338)
|.+...++.+|.-.-+.+-.+-|---++|+..|.
T Consensus 125 l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 125 LSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444455666553
No 369
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=20.96 E-value=1.1e+03 Score=25.82 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 125 SFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEE--GVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 125 ~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~--~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
..+|+||-++-|.-+..+ .+|-..|+++.++|-.-+...+.. .+..-+++.-+|++.+.-+-.|+--.+.+|+.+.+
T Consensus 423 ~~~L~qqlD~kd~~~n~~-sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~ 501 (607)
T KOG0240|consen 423 IESLYQQLDQKDDQINKQ-SQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYD 501 (607)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 347788777777766655 455666777666666544333322 11222333333555544444444455667777777
Q ss_pred HHHHH
Q 019604 203 IWRDL 207 (338)
Q Consensus 203 ~Wq~~ 207 (338)
.|..-
T Consensus 502 ~~~~~ 506 (607)
T KOG0240|consen 502 QKSEE 506 (607)
T ss_pred HHHHH
Confidence 77443
No 370
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=20.95 E-value=1e+02 Score=32.77 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=15.4
Q ss_pred HHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q 019604 167 EGVMKKLKAKEDEIEKIGKLNWALEERVKS 196 (338)
Q Consensus 167 ~~v~~rLReKE~EiEr~~r~n~ELEErlrq 196 (338)
..+...|.+||.||+++.+ ||..+||=
T Consensus 399 ~~~~e~i~~kE~eLe~L~~---elDdkvRF 425 (492)
T PF06273_consen 399 ESLREEISQKEKELEKLTR---ELDDKVRF 425 (492)
T ss_pred hhHHHHHHHHHHHHHHHHH---Hhhccccc
Confidence 3455666777777776433 35555543
No 371
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.94 E-value=4.2e+02 Score=20.81 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 141 QHMEKVRMEVEERKKRQV-RIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~-r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
.+.+++...|++-..-+. -..+..+. ...||..-..++..+..+...|++|+.+|
T Consensus 35 ~~i~~~~~~L~~~~~~~~~~~~~~~~~--y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 35 QQIDRLNEKLKELNEVEQINEPFDLDP--YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666665222 22333333 66778888888888888888888887765
No 372
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.93 E-value=1.3e+03 Score=26.46 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 019604 148 MEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLN 187 (338)
Q Consensus 148 ~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n 187 (338)
..|+.+-..|.....+..|+-...+-|.-|.||+.+.|+-
T Consensus 811 qqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQ 850 (1187)
T KOG0579|consen 811 QQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQ 850 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3344444444444444555555555566666666655543
No 373
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.92 E-value=53 Score=25.13 Aligned_cols=20 Identities=25% Similarity=0.856 Sum_probs=17.0
Q ss_pred cchhHHhcC--CCCCCCCCCCC
Q 019604 311 LCTVCGSSL--HTCPVCKSPKT 330 (338)
Q Consensus 311 lC~~C~~~l--~~CPvCR~~i~ 330 (338)
+|.+|+..+ ..||.|...+.
T Consensus 31 FC~~C~e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 31 FCADCAETMLNGVCPNCGGELV 52 (57)
T ss_pred ccHHHHHHHhcCcCcCCCCccc
Confidence 799999997 89999987543
No 374
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=20.84 E-value=8.8e+02 Score=24.51 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHhhhhHHHHHHH
Q 019604 125 SFQIQEQQFDIDRLI------SQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDE----IEKIGKLNWALEERV 194 (338)
Q Consensus 125 ~~ql~qQ~~EID~~i------~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~E----iEr~~r~n~ELEErl 194 (338)
...|+.|..-++.-- --|.++.|...+|.-+.++|.+|+.|...-...|.+.+.- .+.|..+.+-|+.-|
T Consensus 5 tq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavL 84 (324)
T PF12126_consen 5 TQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVL 84 (324)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334555555444322 2467889999999999999999999887766666555443 334555555566655
Q ss_pred HHHHHHHH
Q 019604 195 KSLCIENQ 202 (338)
Q Consensus 195 rql~~E~q 202 (338)
.++.+=..
T Consensus 85 qRir~G~~ 92 (324)
T PF12126_consen 85 QRIRTGGA 92 (324)
T ss_pred HHHHhHHH
Confidence 55554443
No 375
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.83 E-value=4.9e+02 Score=21.53 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 126 FQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 126 ~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
.++.....|++.=|..=++.|-..--.+=..-+.+|=..-|...-+++++.+.++....+.|-.|..++.....|.+
T Consensus 4 ~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 4 KKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444555554444444444555555666888888999999999888888888877777666655
No 376
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=20.79 E-value=1.2e+02 Score=23.79 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=15.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHH
Q 019604 182 KIGKLNWALEERVKSLCIENQIWR 205 (338)
Q Consensus 182 r~~r~n~ELEErlrql~~E~q~Wq 205 (338)
.-.++|.||||.|++. +|.|.=+
T Consensus 30 h~~~knseleeWl~~e-~E~~~q~ 52 (65)
T PF08599_consen 30 HHAGKNSELEEWLRQE-MEEQRQQ 52 (65)
T ss_pred ccccccccHHHHHHHH-HHHHHHH
Confidence 3457899999998873 4444433
No 377
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.79 E-value=5.7e+02 Score=22.31 Aligned_cols=37 Identities=19% Similarity=0.049 Sum_probs=21.0
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
+.|...++||+++-.-..--.+.+++|..-.++|...
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566665555555666666776666666433
No 378
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=20.68 E-value=8.7e+02 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 166 EEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 166 E~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
.......++..+.+++....+..+|+.++..+..
T Consensus 88 ~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~ 121 (372)
T PF04375_consen 88 QKQQQEQLQQLQQELAQLQQQLAELQQQLAALSQ 121 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455666677777777777778888877654
No 379
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=20.37 E-value=1.2e+03 Score=25.96 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=7.7
Q ss_pred ccccccccc-ccccc
Q 019604 22 IIMNPIEAN-SNIYN 35 (338)
Q Consensus 22 ~~~~~~~~~-~~~~~ 35 (338)
+|+.||.+. +|++.
T Consensus 27 ~i~G~NGsGKS~ll~ 41 (1179)
T TIGR02168 27 GIVGPNGCGKSNIVD 41 (1179)
T ss_pred EEECCCCCChhHHHH
Confidence 346666644 55553
No 380
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=20.21 E-value=1.1e+03 Score=25.19 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 019604 144 EKVRMEVEERKKRQVRIIMDVIEE--GVMKKLKAKEDEIEKIGK--LNWALEERVKSLCIENQIWRDLAQSNEATANALR 219 (338)
Q Consensus 144 ErLR~~L~E~R~rq~r~ll~avE~--~v~~rLReKE~EiEr~~r--~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr 219 (338)
++++..+.+.-..++..++..+.. ....|.++...||..+.+ ...++..+++....|.+.-+.-.+.++.+...|.
T Consensus 24 ~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 24 EELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455444443 234556666666633332 2455666666666666666666666666555544
No 381
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=20.12 E-value=3.4e+02 Score=23.88 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 123 DMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEK 182 (338)
Q Consensus 123 ~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr 182 (338)
++..-|..=-.|+|++.+.+.+ +--.++..-.=|.-+|..|..|+.|-|..||+
T Consensus 71 Eis~~L~~vieELdqi~~~~~~------~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 71 EISPNLRYVIEELDQITGREQA------EVDLKQKILDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred hccHHHHHHHHHHHHHHcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666667888888874321 11233333444557788888888888887776
No 382
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.05 E-value=4.4e+02 Score=27.35 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=22.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATA 215 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a 215 (338)
.+..|.++.++...|++|+.++ |.+-|...++...+++
T Consensus 411 l~~~i~~l~~~i~~~~~rl~~~--e~rl~~qF~ame~~~s 448 (462)
T PRK08032 411 VNKTLKKLTKQYNAVSDSIDAT--IARYKAQFTQLDKLMT 448 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3445555555555577776663 5567777776655543
No 383
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=20.01 E-value=4.9e+02 Score=22.42 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 019604 135 IDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKL 186 (338)
Q Consensus 135 ID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~ 186 (338)
++.+=..+.|++...|+++.+. -++..+.+.|+.---||.|+++.
T Consensus 8 ~~~~~d~~~ee~~~~~q~~~e~-------eA~kkA~K~lkKN~rEIkRL~~H 52 (109)
T PHA02571 8 VEELTDEEVEELLSELQARNEA-------EAEKKAAKILKKNRREIKRLKKH 52 (109)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444556666666666644 45778888888888999997655
Done!