Query 019604
Match_columns 338
No_of_seqs 247 out of 1173
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.4 1E-13 3.6E-18 105.2 5.5 52 287-338 14-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.4 1.2E-13 4E-18 103.1 2.0 52 287-338 6-63 (63)
3 4ic3_A E3 ubiquitin-protein li 99.3 5.9E-13 2E-17 101.8 4.1 52 287-338 23-74 (74)
4 2yho_A E3 ubiquitin-protein li 99.3 6.5E-13 2.2E-17 103.4 3.7 52 287-338 17-68 (79)
5 2vje_A E3 ubiquitin-protein li 99.3 3.2E-13 1.1E-17 101.0 1.6 52 287-338 7-64 (64)
6 2ecg_A Baculoviral IAP repeat- 99.3 9.4E-13 3.2E-17 100.6 2.2 52 287-338 24-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.0 1.1E-10 3.7E-15 113.8 4.0 52 287-338 294-345 (345)
8 2d8t_A Dactylidin, ring finger 98.5 1.3E-07 4.5E-12 70.7 5.1 44 287-331 14-61 (71)
9 4ayc_A E3 ubiquitin-protein li 98.5 1.4E-06 4.8E-11 73.3 11.3 43 290-333 55-101 (138)
10 1chc_A Equine herpes virus-1 r 98.4 8.9E-08 3E-12 70.5 3.0 48 288-336 5-57 (68)
11 2csy_A Zinc finger protein 183 98.4 1.7E-07 5.9E-12 71.6 4.7 46 287-333 14-63 (81)
12 2ecn_A Ring finger protein 141 98.4 6.7E-08 2.3E-12 71.7 1.7 48 287-336 14-65 (70)
13 2ea6_A Ring finger protein 4; 98.3 2.4E-07 8.3E-12 67.8 3.3 44 287-331 14-68 (69)
14 2ysl_A Tripartite motif-contai 98.3 4E-07 1.4E-11 67.7 4.4 45 286-331 18-69 (73)
15 2ecm_A Ring finger and CHY zin 98.3 3.5E-07 1.2E-11 64.4 3.4 43 288-331 5-55 (55)
16 2xeu_A Ring finger protein 4; 98.3 2.5E-07 8.4E-12 66.8 2.2 49 288-337 3-64 (64)
17 2egp_A Tripartite motif-contai 98.3 5.9E-07 2E-11 67.6 3.9 45 286-331 10-65 (79)
18 2kiz_A E3 ubiquitin-protein li 98.2 6.6E-07 2.3E-11 66.1 4.0 46 287-333 13-65 (69)
19 2ect_A Ring finger protein 126 98.2 7.2E-07 2.5E-11 67.4 4.2 45 287-332 14-65 (78)
20 2ct2_A Tripartite motif protei 98.2 8.4E-07 2.9E-11 68.0 4.3 45 286-331 13-68 (88)
21 2djb_A Polycomb group ring fin 98.2 1.1E-06 3.8E-11 65.7 4.6 47 285-332 12-63 (72)
22 3ng2_A RNF4, snurf, ring finge 98.2 2.9E-07 9.9E-12 68.0 1.1 44 287-331 9-63 (71)
23 2ecw_A Tripartite motif-contai 98.2 2.1E-06 7E-11 64.9 5.7 44 287-331 18-71 (85)
24 1iym_A EL5; ring-H2 finger, ub 98.2 1.2E-06 4.1E-11 61.7 3.9 42 288-330 5-54 (55)
25 2ep4_A Ring finger protein 24; 98.2 1.1E-06 3.6E-11 65.8 3.5 47 287-334 14-67 (74)
26 2y1n_A E3 ubiquitin-protein li 98.1 1.2E-06 4.1E-11 86.7 4.6 49 288-337 332-385 (389)
27 2ecv_A Tripartite motif-contai 98.1 2.5E-06 8.7E-11 64.4 5.3 44 287-331 18-71 (85)
28 1bor_A Transcription factor PM 98.1 1E-06 3.6E-11 63.4 2.6 43 288-331 6-49 (56)
29 2ecy_A TNF receptor-associated 98.1 1.5E-06 5.2E-11 63.8 3.4 45 286-331 13-62 (66)
30 2l0b_A E3 ubiquitin-protein li 98.1 1.2E-06 4E-11 68.9 2.9 44 287-331 39-89 (91)
31 2yur_A Retinoblastoma-binding 98.1 2.9E-06 9.9E-11 64.0 4.6 45 285-330 12-63 (74)
32 1x4j_A Ring finger protein 38; 98.0 1.9E-06 6.5E-11 64.8 2.5 44 287-331 22-72 (75)
33 2ecj_A Tripartite motif-contai 98.0 3.6E-06 1.2E-10 59.6 3.5 39 286-325 13-58 (58)
34 1g25_A CDK-activating kinase a 98.0 2.1E-06 7.3E-11 62.8 1.7 42 289-331 4-55 (65)
35 3fl2_A E3 ubiquitin-protein li 98.0 2.6E-06 9E-11 70.1 2.5 43 288-331 52-99 (124)
36 3l11_A E3 ubiquitin-protein li 98.0 4.2E-06 1.5E-10 67.8 3.5 45 286-331 13-62 (115)
37 3ztg_A E3 ubiquitin-protein li 97.9 4.7E-06 1.6E-10 64.7 3.2 43 286-329 11-60 (92)
38 1e4u_A Transcriptional repress 97.9 3.1E-06 1.1E-10 65.7 1.6 46 287-333 10-64 (78)
39 1jm7_A BRCA1, breast cancer ty 97.9 3.6E-06 1.2E-10 67.3 2.0 43 288-331 21-70 (112)
40 2y43_A E3 ubiquitin-protein li 97.9 5.5E-06 1.9E-10 65.5 2.5 44 287-331 21-69 (99)
41 3lrq_A E3 ubiquitin-protein li 97.8 5E-06 1.7E-10 66.3 2.2 44 287-331 21-70 (100)
42 1t1h_A Gspef-atpub14, armadill 97.8 8.1E-06 2.8E-10 61.5 3.0 45 286-331 6-55 (78)
43 2ckl_A Polycomb group ring fin 97.8 7.6E-06 2.6E-10 65.7 2.8 44 287-331 14-62 (108)
44 1z6u_A NP95-like ring finger p 97.8 6.4E-06 2.2E-10 70.8 2.4 43 289-332 79-126 (150)
45 2ckl_B Ubiquitin ligase protei 97.8 7.8E-06 2.7E-10 70.4 2.7 44 286-330 52-101 (165)
46 2ysj_A Tripartite motif-contai 97.8 1.5E-05 5.2E-10 57.7 3.7 39 286-325 18-63 (63)
47 3hct_A TNF receptor-associated 97.7 1.6E-05 5.4E-10 65.0 3.1 45 286-331 16-65 (118)
48 1jm7_B BARD1, BRCA1-associated 97.7 1.3E-05 4.3E-10 65.5 2.2 43 287-330 21-66 (117)
49 2f42_A STIP1 homology and U-bo 97.7 8.8E-05 3E-09 66.2 7.7 45 286-331 104-153 (179)
50 1v87_A Deltex protein 2; ring- 97.6 1.1E-05 3.9E-10 64.9 1.3 42 289-331 26-94 (114)
51 4ap4_A E3 ubiquitin ligase RNF 97.6 1.4E-05 4.7E-10 64.9 1.6 44 287-331 6-60 (133)
52 1rmd_A RAG1; V(D)J recombinati 97.6 2.3E-05 7.9E-10 63.5 2.4 44 287-331 22-70 (116)
53 4ap4_A E3 ubiquitin ligase RNF 97.6 2.7E-05 9.3E-10 63.2 2.5 50 287-337 71-133 (133)
54 2ecl_A Ring-box protein 2; RNF 97.5 4.1E-05 1.4E-09 58.9 2.2 30 301-331 43-76 (81)
55 2c2l_A CHIP, carboxy terminus 97.3 0.00051 1.7E-08 62.2 8.3 44 287-331 207-255 (281)
56 3hcs_A TNF receptor-associated 97.2 0.00018 6.1E-09 62.0 3.1 45 286-331 16-65 (170)
57 1wgm_A Ubiquitin conjugation f 97.1 0.00051 1.7E-08 55.1 5.2 46 285-331 19-69 (98)
58 2kre_A Ubiquitin conjugation f 97.1 0.00039 1.3E-08 56.0 4.2 46 285-331 26-75 (100)
59 3knv_A TNF receptor-associated 97.1 5.6E-05 1.9E-09 64.4 -0.8 43 286-329 29-76 (141)
60 2kr4_A Ubiquitin conjugation f 97.1 0.00039 1.3E-08 54.1 3.9 46 285-331 11-60 (85)
61 3dpl_R Ring-box protein 1; ubi 97.0 0.00028 9.5E-09 57.7 2.7 30 300-330 67-100 (106)
62 2d8s_A Cellular modulator of i 96.6 0.0015 5.1E-08 50.7 3.6 43 288-331 15-70 (80)
63 4a0k_B E3 ubiquitin-protein li 96.6 0.00037 1.3E-08 58.2 0.0 29 300-329 78-110 (117)
64 3vk6_A E3 ubiquitin-protein li 96.2 0.0029 1E-07 51.8 3.4 45 290-335 3-53 (101)
65 2yu4_A E3 SUMO-protein ligase 95.9 0.0039 1.3E-07 49.1 2.9 42 286-328 5-59 (94)
66 1wim_A KIAA0161 protein; ring 95.7 0.0025 8.4E-08 49.8 0.9 40 288-328 5-61 (94)
67 2v71_A Nuclear distribution pr 94.8 0.68 2.3E-05 41.6 13.9 53 174-226 45-101 (189)
68 2v66_B Nuclear distribution pr 94.5 1.4 4.6E-05 36.6 14.0 88 138-230 7-94 (111)
69 2oqq_A Transcription factor HY 94.5 0.1 3.4E-06 36.3 5.9 34 176-209 8-41 (42)
70 3htk_C E3 SUMO-protein ligase 94.0 0.026 8.7E-07 53.4 2.8 45 285-330 178-231 (267)
71 1vyx_A ORF K3, K3RING; zinc-bi 91.8 0.069 2.3E-06 39.1 1.9 43 288-330 6-58 (60)
72 2v71_A Nuclear distribution pr 91.2 5.7 0.00019 35.6 14.0 85 141-230 63-147 (189)
73 2bay_A PRE-mRNA splicing facto 91.1 0.097 3.3E-06 38.3 2.1 42 289-331 4-50 (61)
74 1ci6_A Transcription factor AT 89.8 1.3 4.4E-05 32.8 7.2 35 173-207 25-59 (63)
75 3oja_B Anopheles plasmodium-re 89.0 6.5 0.00022 39.1 14.1 85 143-227 479-572 (597)
76 3oja_B Anopheles plasmodium-re 88.8 13 0.00045 36.9 16.2 14 144-157 505-518 (597)
77 3mq9_A Bone marrow stromal ant 84.8 11 0.00037 36.7 12.7 26 132-157 395-420 (471)
78 4etp_A Kinesin-like protein KA 83.9 2.6 8.9E-05 41.4 7.8 56 171-226 3-58 (403)
79 3iv1_A Tumor susceptibility ge 82.4 9.3 0.00032 29.7 8.8 45 160-204 3-58 (78)
80 3s9g_A Protein hexim1; cyclin 81.5 12 0.00042 30.4 9.5 30 170-206 64-93 (104)
81 2v66_B Nuclear distribution pr 79.6 5.3 0.00018 33.0 7.0 44 184-227 2-49 (111)
82 3hnw_A Uncharacterized protein 79.5 14 0.00048 31.3 9.8 32 171-202 103-134 (138)
83 3oja_A Leucine-rich immune mol 77.7 35 0.0012 33.2 13.5 58 172-229 422-479 (487)
84 1a93_B MAX protein, coiled coi 77.7 2.9 9.8E-05 27.8 3.8 29 170-198 6-34 (34)
85 2ko5_A Ring finger protein Z; 77.5 0.63 2.1E-05 37.8 0.7 46 287-335 27-77 (99)
86 1jnm_A Proto-oncogene C-JUN; B 76.3 10 0.00035 27.5 7.1 18 189-206 26-43 (62)
87 1ez3_A Syntaxin-1A; three heli 75.4 13 0.00045 29.7 8.3 86 140-228 18-110 (127)
88 3mq7_A Bone marrow stromal ant 74.2 37 0.0013 28.3 13.4 80 121-202 14-102 (121)
89 3mq7_A Bone marrow stromal ant 74.0 16 0.00056 30.5 8.4 52 143-195 55-109 (121)
90 1uii_A Geminin; human, DNA rep 73.9 22 0.00077 27.9 8.7 50 143-195 26-77 (83)
91 1hjb_A Ccaat/enhancer binding 73.5 25 0.00085 27.7 9.1 30 178-207 43-72 (87)
92 2wt7_A Proto-oncogene protein 72.5 25 0.00086 25.6 9.7 36 173-208 25-60 (63)
93 1t2k_D Cyclic-AMP-dependent tr 72.0 25 0.00085 25.3 9.4 35 173-207 24-58 (61)
94 1dip_A Delta-sleep-inducing pe 71.7 2.5 8.5E-05 32.8 2.7 31 178-208 15-45 (78)
95 3a7p_A Autophagy protein 16; c 70.7 50 0.0017 28.6 11.0 34 174-207 99-136 (152)
96 1wlq_A Geminin; coiled-coil; 2 69.6 17 0.00057 28.7 7.1 47 144-193 19-67 (83)
97 2l5g_B Putative uncharacterize 69.5 11 0.00037 26.2 5.3 31 171-201 9-39 (42)
98 1kd8_A GABH AIV, GCN4 acid bas 69.3 5.1 0.00017 26.9 3.5 29 172-200 2-30 (36)
99 3k1l_B Fancl; UBC, ring, RWD, 68.4 0.97 3.3E-05 44.5 -0.2 46 288-334 308-376 (381)
100 3nmd_A CGMP dependent protein 67.7 13 0.00044 28.6 6.0 32 173-204 35-66 (72)
101 1t6f_A Geminin; coiled-coil, c 66.3 6.6 0.00023 26.4 3.6 22 171-192 14-35 (37)
102 1jnm_A Proto-oncogene C-JUN; B 66.0 16 0.00056 26.4 6.1 36 171-206 22-57 (62)
103 3na7_A HP0958; flagellar bioge 64.3 83 0.0028 28.4 13.4 48 173-220 92-139 (256)
104 1kd8_B GABH BLL, GCN4 acid bas 63.8 7.6 0.00026 26.0 3.5 27 172-198 2-28 (36)
105 2jee_A YIIU; FTSZ, septum, coi 63.6 42 0.0014 26.2 8.3 20 188-207 51-70 (81)
106 2ct0_A Non-SMC element 1 homol 62.8 14 0.00049 27.9 5.5 43 288-331 15-64 (74)
107 1gd2_E Transcription factor PA 62.8 47 0.0016 25.1 9.0 13 190-202 34-46 (70)
108 1s94_A S-syntaxin; three helix 61.6 38 0.0013 28.9 8.7 87 140-229 49-142 (180)
109 1gu4_A CAAT/enhancer binding p 61.5 43 0.0015 25.7 8.0 28 179-206 44-71 (78)
110 2wvr_A Geminin; DNA replicatio 60.9 38 0.0013 30.8 8.7 60 143-217 95-154 (209)
111 3ghg_A Fibrinogen alpha chain; 60.5 29 0.00098 35.7 8.7 22 129-150 77-98 (562)
112 3vem_A Helicase protein MOM1; 59.8 65 0.0022 26.7 9.3 30 116-145 29-58 (115)
113 1wle_A Seryl-tRNA synthetase; 58.6 67 0.0023 32.5 11.1 89 124-231 53-155 (501)
114 2dfs_A Myosin-5A; myosin-V, in 58.5 1.6E+02 0.0055 32.5 14.9 22 177-198 997-1018(1080)
115 2jun_A Midline-1; B-BOX, TRIM, 57.7 3.7 0.00013 31.7 1.4 29 289-318 4-35 (101)
116 1ci6_A Transcription factor AT 57.0 54 0.0018 23.9 7.9 49 168-222 12-60 (63)
117 2q6q_A Spindle POLE BODY compo 56.8 63 0.0022 24.6 8.0 28 169-196 8-35 (74)
118 2dgc_A Protein (GCN4); basic d 56.2 32 0.0011 25.2 6.2 18 187-204 32-49 (63)
119 3vkg_A Dynein heavy chain, cyt 53.7 1.9E+02 0.0066 35.9 15.5 13 127-139 1949-1961(3245)
120 1t3j_A Mitofusin 1; coiled coi 53.5 60 0.0021 26.1 7.9 41 165-209 41-81 (96)
121 1weo_A Cellulose synthase, cat 53.1 9.5 0.00032 30.6 3.0 44 287-330 15-69 (93)
122 3vem_A Helicase protein MOM1; 52.2 1E+02 0.0034 25.6 10.8 9 177-185 67-75 (115)
123 3i00_A HIP-I, huntingtin-inter 51.6 1E+02 0.0035 25.4 9.5 24 134-158 16-39 (120)
124 2fiy_A Protein FDHE homolog; F 51.4 5.6 0.00019 37.9 1.8 42 288-329 182-232 (309)
125 2b5u_A Colicin E3; high resolu 50.6 2E+02 0.0067 29.5 12.8 85 141-227 321-416 (551)
126 1fmh_A General control protein 48.9 30 0.001 22.2 4.3 27 175-201 5-31 (33)
127 1gd2_E Transcription factor PA 48.4 84 0.0029 23.6 7.6 23 180-202 45-67 (70)
128 3s4r_A Vimentin; alpha-helix, 48.1 98 0.0033 24.2 11.0 81 117-206 11-91 (93)
129 2akf_A Coronin-1A; coiled coil 47.4 36 0.0012 21.9 4.5 27 176-202 4-30 (32)
130 2p4v_A Transcription elongatio 46.8 37 0.0013 28.9 6.1 22 178-199 46-67 (158)
131 2zxx_A Geminin; coiled-coil, c 46.1 90 0.0031 24.2 7.5 47 144-193 15-63 (79)
132 2zet_C Melanophilin; complex, 45.5 21 0.0007 30.7 4.2 6 311-316 95-100 (153)
133 3s9g_A Protein hexim1; cyclin 45.0 1.2E+02 0.0042 24.5 9.2 22 184-205 64-85 (104)
134 1hjb_A Ccaat/enhancer binding 43.4 57 0.002 25.6 6.2 39 186-224 37-75 (87)
135 2dgc_A Protein (GCN4); basic d 42.9 78 0.0027 23.1 6.5 30 171-200 30-59 (63)
136 2p22_C Protein SRN2; endosome, 42.7 1.8E+02 0.0061 25.7 13.7 95 122-229 41-140 (192)
137 3qne_A Seryl-tRNA synthetase, 42.0 1.1E+02 0.0038 30.8 9.6 76 135-230 32-109 (485)
138 3m48_A General control protein 41.9 27 0.00093 23.0 3.3 24 174-197 3-26 (33)
139 1uo4_A General control protein 40.8 35 0.0012 22.6 3.7 26 172-197 2-27 (34)
140 2oxj_A Hybrid alpha/beta pepti 40.8 34 0.0012 22.6 3.7 23 175-197 5-27 (34)
141 1gu4_A CAAT/enhancer binding p 40.7 76 0.0026 24.3 6.4 34 187-220 38-71 (78)
142 2wq1_A General control protein 40.2 32 0.0011 22.6 3.5 25 173-197 2-26 (33)
143 3nmd_A CGMP dependent protein 40.1 61 0.0021 24.8 5.6 10 173-182 28-37 (72)
144 1deq_A Fibrinogen (alpha chain 40.0 2.1E+02 0.0072 28.2 10.8 67 127-194 78-157 (390)
145 3c3g_A Alpha/beta peptide with 39.8 36 0.0012 22.4 3.7 24 174-197 3-26 (33)
146 3o0z_A RHO-associated protein 39.7 1.9E+02 0.0066 25.3 14.4 33 124-156 7-42 (168)
147 3u06_A Protein claret segregat 39.6 86 0.0029 30.8 8.2 52 174-225 6-57 (412)
148 3m91_A Proteasome-associated A 39.2 55 0.0019 23.3 5.0 31 170-200 8-38 (51)
149 2yy0_A C-MYC-binding protein; 38.3 55 0.0019 23.3 4.9 27 178-204 19-45 (53)
150 2f23_A Anti-cleavage anti-GREA 38.3 37 0.0012 28.8 4.7 24 143-167 12-35 (156)
151 3tnu_B Keratin, type II cytosk 38.1 1.6E+02 0.0055 23.9 10.4 10 128-137 45-54 (129)
152 3e98_A GAF domain of unknown f 37.7 73 0.0025 29.1 7.0 12 186-197 80-91 (252)
153 3i00_A HIP-I, huntingtin-inter 37.7 1.1E+02 0.0037 25.3 7.3 29 176-204 13-41 (120)
154 2hy6_A General control protein 37.6 39 0.0013 22.4 3.6 26 172-197 2-27 (34)
155 1lwu_B Fibrinogen beta chain; 37.2 33 0.0011 32.9 4.7 31 166-196 23-53 (323)
156 1t2k_D Cyclic-AMP-dependent tr 37.0 1.1E+02 0.0038 21.7 8.1 31 189-226 26-56 (61)
157 2nsa_A Trigger factor, TF; cha 36.7 1.8E+02 0.0061 24.0 8.8 57 126-182 59-116 (170)
158 3tnu_B Keratin, type II cytosk 36.6 1.7E+02 0.0058 23.7 12.8 63 132-200 35-97 (129)
159 1grj_A GREA protein; transcrip 36.3 52 0.0018 27.9 5.4 55 144-199 12-67 (158)
160 1gmj_A ATPase inhibitor; coile 36.2 1.6E+02 0.0053 23.1 8.1 21 171-191 58-78 (84)
161 2wt7_A Proto-oncogene protein 36.1 1.2E+02 0.0041 21.8 8.5 22 187-208 25-46 (63)
162 3c3f_A Alpha/beta peptide with 36.1 44 0.0015 22.0 3.7 24 173-196 3-26 (34)
163 2bni_A General control protein 35.2 48 0.0017 21.9 3.7 26 172-197 2-27 (34)
164 2dq0_A Seryl-tRNA synthetase; 34.7 1.4E+02 0.0046 29.7 8.8 81 121-207 11-98 (455)
165 3ryc_E Stathmin-4; alpha-tubul 34.7 2.2E+02 0.0074 24.4 9.0 23 144-166 64-86 (143)
166 3vkg_A Dynein heavy chain, cyt 34.7 6.1E+02 0.021 31.6 15.7 32 123-154 1914-1947(3245)
167 3na7_A HP0958; flagellar bioge 34.0 2.6E+02 0.0089 25.1 13.0 8 289-296 199-206 (256)
168 1i84_S Smooth muscle myosin he 33.8 1.8E+02 0.0061 32.1 10.4 28 173-200 908-935 (1184)
169 3a2a_A Voltage-gated hydrogen 33.1 1.2E+02 0.0042 22.1 6.0 27 159-186 21-47 (58)
170 3tnu_A Keratin, type I cytoske 32.7 2E+02 0.0069 23.4 13.2 53 124-182 43-95 (131)
171 3bas_A Myosin heavy chain, str 32.4 1.7E+02 0.0058 22.5 8.6 27 173-199 58-84 (89)
172 1cxz_B Protein (PKN); protein- 31.8 1.9E+02 0.0063 22.7 8.4 10 143-152 44-53 (86)
173 1yke_B RNA polymerase II holoe 31.7 2.3E+02 0.0079 24.1 8.7 16 125-140 63-78 (151)
174 3tnu_A Keratin, type I cytoske 31.2 2.1E+02 0.0073 23.2 9.6 23 177-199 76-98 (131)
175 3kin_B Kinesin heavy chain; mo 30.8 60 0.002 26.4 4.6 19 187-205 98-116 (117)
176 3oja_A Leucine-rich immune mol 30.7 3E+02 0.01 26.4 10.5 13 127-139 364-376 (487)
177 2r2v_A GCN4 leucine zipper; co 30.2 63 0.0022 21.3 3.7 25 173-197 3-27 (34)
178 3pwf_A Rubrerythrin; non heme 29.6 20 0.00067 31.1 1.5 17 319-335 153-169 (170)
179 3lay_A Zinc resistance-associa 29.4 1.1E+02 0.0037 26.7 6.4 9 131-139 72-80 (175)
180 2qag_C Septin-7; cell cycle, c 28.9 12 0.0004 36.8 0.0 22 186-207 374-395 (418)
181 1yuz_A Nigerythrin; rubrythrin 28.8 3E+02 0.01 24.1 15.6 47 120-166 29-85 (202)
182 3nw0_A Non-structural maintena 28.8 28 0.00095 31.7 2.5 43 288-331 180-229 (238)
183 3ghg_A Fibrinogen alpha chain; 28.8 5E+02 0.017 26.7 14.7 99 123-225 50-150 (562)
184 1ykh_B RNA polymerase II holoe 28.7 2.5E+02 0.0085 23.2 8.7 17 124-140 62-78 (132)
185 1deq_A Fibrinogen (alpha chain 28.0 4.5E+02 0.015 25.9 14.2 55 106-160 26-86 (390)
186 1e8j_A Rubredoxin; iron-sulfur 28.0 25 0.00086 25.0 1.6 11 287-297 35-45 (52)
187 3ghg_C Fibrinogen gamma chain; 27.9 4.5E+02 0.015 26.0 11.1 103 121-225 22-131 (411)
188 2cs3_A Protein C14ORF4, MY039 27.0 30 0.001 27.4 2.0 31 288-318 15-48 (93)
189 2i1j_A Moesin; FERM, coiled-co 26.7 75 0.0026 32.5 5.5 68 141-217 300-367 (575)
190 1yk4_A Rubredoxin, RD; electro 26.6 28 0.00094 24.7 1.6 13 321-333 37-49 (52)
191 3ol1_A Vimentin; structural ge 26.6 2.5E+02 0.0087 22.6 14.2 86 125-222 19-117 (119)
192 2wvr_A Geminin; DNA replicatio 26.5 2.8E+02 0.0095 25.1 8.5 52 137-197 97-148 (209)
193 2v3b_B Rubredoxin 2, rubredoxi 26.4 27 0.00093 25.0 1.6 14 321-334 38-51 (55)
194 1nkp_A C-MYC, MYC proto-oncoge 26.4 1.8E+02 0.0062 22.3 6.5 18 180-197 68-85 (88)
195 1z60_A TFIIH basal transcripti 26.3 32 0.0011 25.2 2.0 36 290-326 17-59 (59)
196 2ve7_A Kinetochore protein HEC 26.3 73 0.0025 30.0 5.0 37 167-203 174-210 (315)
197 4rxn_A Rubredoxin; electron tr 26.1 24 0.00083 25.4 1.3 11 287-297 35-45 (54)
198 1nkp_B MAX protein, MYC proto- 26.0 1.1E+02 0.0039 22.8 5.2 19 177-195 60-78 (83)
199 4ani_A Protein GRPE; chaperone 25.9 1.1E+02 0.0038 27.6 5.9 26 133-159 59-84 (213)
200 1d7m_A Cortexillin I; coiled-c 25.7 2.6E+02 0.0087 22.4 10.0 18 180-199 64-81 (101)
201 1fio_A SSO1 protein; four heli 25.2 3E+02 0.01 23.0 8.7 39 184-226 59-97 (196)
202 1zxa_A CGMP-dependent protein 25.0 90 0.0031 23.5 4.3 18 165-182 12-29 (67)
203 2kn9_A Rubredoxin; metalloprot 24.6 34 0.0012 26.6 1.9 15 321-335 62-76 (81)
204 1m1j_B Fibrinogen beta chain; 24.5 5.5E+02 0.019 25.7 11.8 73 157-229 86-158 (464)
205 1ses_A Seryl-tRNA synthetase; 24.5 2.5E+02 0.0085 27.4 8.6 16 215-230 87-102 (421)
206 3mtu_A Tropomyosin alpha-1 cha 24.3 2.3E+02 0.0078 21.3 7.2 36 167-202 5-47 (75)
207 2wuj_A Septum site-determining 23.9 58 0.002 23.3 3.0 19 179-197 35-53 (57)
208 2i1j_A Moesin; FERM, coiled-co 23.3 43 0.0015 34.3 2.9 31 185-215 363-393 (575)
209 1a92_A Delta antigen; leucine 23.3 99 0.0034 22.0 3.9 23 170-192 13-35 (50)
210 3sde_A Paraspeckle component 1 23.2 98 0.0034 27.2 5.0 33 128-160 227-259 (261)
211 1x79_B RAB GTPase binding effe 22.8 2E+02 0.0068 23.6 6.3 51 176-226 18-72 (112)
212 1d7m_A Cortexillin I; coiled-c 22.7 2.9E+02 0.01 22.0 10.6 60 141-202 13-75 (101)
213 3lss_A Seryl-tRNA synthetase; 22.5 4.9E+02 0.017 26.1 10.5 24 135-158 36-61 (484)
214 2dq3_A Seryl-tRNA synthetase; 22.5 1.5E+02 0.0051 29.0 6.6 17 215-231 91-107 (425)
215 3vea_B MATP, macrodomain TER p 22.5 17 0.00057 31.4 -0.3 90 127-226 46-147 (151)
216 3m9b_A Proteasome-associated A 22.4 1.2E+02 0.004 28.3 5.4 33 170-202 53-85 (251)
217 6rxn_A Rubredoxin; electron tr 22.1 33 0.0011 23.9 1.3 13 321-333 32-44 (46)
218 1wt6_A Myotonin-protein kinase 21.7 1.7E+02 0.0059 22.8 5.4 15 186-200 53-67 (81)
219 1lko_A Rubrerythrin all-iron(I 21.7 23 0.00078 31.0 0.4 15 320-334 172-186 (191)
220 1dx8_A Rubredoxin; electron tr 21.2 34 0.0012 25.8 1.3 15 321-335 42-56 (70)
221 3u06_A Protein claret segregat 20.9 3E+02 0.01 26.9 8.3 34 171-204 17-50 (412)
222 3cvf_A Homer-3, homer protein 20.8 2.9E+02 0.0099 21.2 6.9 26 180-205 15-40 (79)
223 1vcs_A Vesicle transport throu 20.8 3E+02 0.01 21.5 7.0 14 189-202 49-62 (102)
224 2oa5_A Hypothetical protein BQ 20.4 2.3E+02 0.0077 23.3 6.1 24 121-152 10-33 (110)
225 2qag_B Septin-6, protein NEDD5 20.3 22 0.00074 35.3 0.0 22 186-207 378-399 (427)
226 2lq4_p Lysophosphatidic acid r 20.1 9.4 0.00032 28.8 -2.0 18 188-205 16-33 (80)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=105.17 Aligned_cols=52 Identities=33% Similarity=0.747 Sum_probs=48.9
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEEEeeC
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~V~lS 338 (338)
+...|+||++++++++|+||+|+++|..|...+..||+||.+|...++||.+
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 3568999999999999999999999999999999999999999999999863
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.37 E-value=1.2e-13 Score=103.10 Aligned_cols=52 Identities=25% Similarity=0.560 Sum_probs=47.9
Q ss_pred cccccccccccCcceEEe--CCCCcccchhHHhcCC----CCCCCCCCCCceEEEeeC
Q 019604 287 GSRLCRNCRKEESCVLLL--PCRHLCLCTVCGSSLH----TCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLl--PCrHlclC~~C~~~l~----~CPvCR~~i~~~V~V~lS 338 (338)
....|.||++++++.+|+ ||||+++|..|...+. .||+||.+|...++||+|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 356899999999988877 9999999999999975 999999999999999987
No 3
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.33 E-value=5.9e-13 Score=101.83 Aligned_cols=52 Identities=29% Similarity=0.802 Sum_probs=48.9
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEEEeeC
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~V~lS 338 (338)
....|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 3568999999999999999999999999999999999999999999999997
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.32 E-value=6.5e-13 Score=103.43 Aligned_cols=52 Identities=35% Similarity=0.751 Sum_probs=49.2
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEEEeeC
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~V~lS 338 (338)
+...|.||++...+++|+||||.++|..|...+..||+||.+|...++||++
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 3568999999999999999999999999999999999999999999999975
No 5
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.31 E-value=3.2e-13 Score=101.00 Aligned_cols=52 Identities=25% Similarity=0.576 Sum_probs=47.8
Q ss_pred cccccccccccCcceEEe--CCCCcccchhHHhcC----CCCCCCCCCCCceEEEeeC
Q 019604 287 GSRLCRNCRKEESCVLLL--PCRHLCLCTVCGSSL----HTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLl--PCrHlclC~~C~~~l----~~CPvCR~~i~~~V~V~lS 338 (338)
+...|.||++++++++|+ ||||+++|..|...+ ..||+||.+|...++||+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 346799999999999998 999999999999986 4699999999999999987
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.4e-13 Score=100.64 Aligned_cols=52 Identities=29% Similarity=0.801 Sum_probs=49.7
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEEEeeC
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~V~lS 338 (338)
....|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 4568999999999999999999999999999999999999999999999997
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.02 E-value=1.1e-10 Score=113.77 Aligned_cols=52 Identities=35% Similarity=0.859 Sum_probs=48.1
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcCCCCCCCCCCCCceEEEeeC
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSLHTCPVCKSPKTVSVHVNMS 338 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l~~CPvCR~~i~~~V~V~lS 338 (338)
....|.||++...+.+++||||.|+|..|...+..||+||.+|...++||+|
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 3568999999999999999999999999999999999999999999999997
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.3e-07 Score=70.65 Aligned_cols=44 Identities=23% Similarity=0.637 Sum_probs=39.1
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
....|.||++...+.+++||+|. +|..|...+ ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34679999999999999999999 999999875 689999998864
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.45 E-value=1.4e-06 Score=73.31 Aligned_cols=43 Identities=23% Similarity=0.591 Sum_probs=38.0
Q ss_pred ccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceE
Q 019604 290 LCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSV 333 (338)
Q Consensus 290 ~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V 333 (338)
.|.||++...+.+++||||. +|..|...+ ..||+||.++....
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 59999999999999999996 999998763 68999999987653
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.44 E-value=8.9e-08 Score=70.51 Aligned_cols=48 Identities=38% Similarity=0.802 Sum_probs=41.3
Q ss_pred ccccccccccCcc-eEEeCCCCcccchhHHhcC----CCCCCCCCCCCceEEEe
Q 019604 288 SRLCRNCRKEESC-VLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVHVN 336 (338)
Q Consensus 288 ~~~C~vC~~~~~~-vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~V~ 336 (338)
...|.||++...+ ++++||+|. +|..|...+ ..||+||.++...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 3579999999887 689999999 999998763 78999999999877654
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.7e-07 Score=71.62 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=39.6
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceE
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSV 333 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V 333 (338)
....|.||++...+.+++||+|. +|..|...+ ..||+||.++...+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 34689999999999999999999 899998774 68999999987443
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=6.7e-08 Score=71.72 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=41.5
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceEEEe
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVHVN 336 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~V~ 336 (338)
....|.||++...+ +++||+|. +|..|...+ ..||+||.++.....+|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 45689999999988 88999999 999999875 68999999998766554
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.4e-07 Score=67.76 Aligned_cols=44 Identities=27% Similarity=0.673 Sum_probs=37.0
Q ss_pred cccccccccccCcce-------EEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCV-------LLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~v-------vLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
....|.||++...+. +++||+|. +|..|...+ ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 456799999976664 88999997 999999875 689999998764
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=4e-07 Score=67.71 Aligned_cols=45 Identities=22% Similarity=0.585 Sum_probs=38.9
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-------CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-------HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 331 (338)
.....|.||++...+.+++||+|. +|..|...+ ..||+||.++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345789999999999999999999 999999874 279999998864
No 15
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.30 E-value=3.5e-07 Score=64.43 Aligned_cols=43 Identities=33% Similarity=0.751 Sum_probs=36.5
Q ss_pred ccccccccccCcc----eEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESC----VLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~----vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
...|.||++...+ ++++||+|. +|..|...+ ..||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999997654 899999997 999999875 799999998753
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.28 E-value=2.5e-07 Score=66.77 Aligned_cols=49 Identities=22% Similarity=0.535 Sum_probs=39.3
Q ss_pred ccccccccccCcce-------EEeCCCCcccchhHHhcC----CCCCCCCCCCC--ceEEEee
Q 019604 288 SRLCRNCRKEESCV-------LLLPCRHLCLCTVCGSSL----HTCPVCKSPKT--VSVHVNM 337 (338)
Q Consensus 288 ~~~C~vC~~~~~~v-------vLlPCrHlclC~~C~~~l----~~CPvCR~~i~--~~V~V~l 337 (338)
...|.||++...+. +++||+|. +|..|...+ ..||+||.++. ....+||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 35799999976553 88999999 999999764 69999999987 4555554
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.25 E-value=5.9e-07 Score=67.64 Aligned_cols=45 Identities=29% Similarity=0.572 Sum_probs=38.4
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhc-----------CCCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSS-----------LHTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~-----------l~~CPvCR~~i~~ 331 (338)
.....|.||++...+.+++||+|. +|..|... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345789999999988888999998 99999986 3479999998863
No 18
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.25 E-value=6.6e-07 Score=66.07 Aligned_cols=46 Identities=28% Similarity=0.615 Sum_probs=37.4
Q ss_pred cccccccccccC---cceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceE
Q 019604 287 GSRLCRNCRKEE---SCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSV 333 (338)
Q Consensus 287 ~~~~C~vC~~~~---~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V 333 (338)
....|.||++.. ..++++||+|. +|..|...+ ..||+||..+...+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 346799997643 56888999999 999998764 78999999987654
No 19
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.24 E-value=7.2e-07 Score=67.39 Aligned_cols=45 Identities=31% Similarity=0.716 Sum_probs=36.0
Q ss_pred ccccccccccc---CcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCce
Q 019604 287 GSRLCRNCRKE---ESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVS 332 (338)
Q Consensus 287 ~~~~C~vC~~~---~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~ 332 (338)
....|.||++. ...++++||+|. +|..|...+ ..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 35679999664 456678899998 999998763 7899999988753
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=8.4e-07 Score=67.97 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=38.1
Q ss_pred CcccccccccccCcc----eEEeCCCCcccchhHHhcC-------CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESC----VLLLPCRHLCLCTVCGSSL-------HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~----vvLlPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 331 (338)
.....|.||++...+ .+++||+|. +|..|...+ ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345789999999888 889999998 999998774 589999997653
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.1e-06 Score=65.71 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=39.1
Q ss_pred CCcccccccccccCcceEEe-CCCCcccchhHHhcC----CCCCCCCCCCCce
Q 019604 285 SGGSRLCRNCRKEESCVLLL-PCRHLCLCTVCGSSL----HTCPVCKSPKTVS 332 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLl-PCrHlclC~~C~~~l----~~CPvCR~~i~~~ 332 (338)
......|.||++...+.+.+ ||+|. +|..|...+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34567899999998877776 99999 999998663 6999999988653
No 22
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.20 E-value=2.9e-07 Score=68.00 Aligned_cols=44 Identities=27% Similarity=0.673 Sum_probs=36.8
Q ss_pred cccccccccccCcce-------EEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCV-------LLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~v-------vLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
....|.||++...+. +++||+|. +|..|...+ ..||+||.++..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 346799999976654 88999998 999999764 799999998874
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.19 E-value=2.1e-06 Score=64.93 Aligned_cols=44 Identities=25% Similarity=0.575 Sum_probs=38.3
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhc----------CCCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSS----------LHTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~----------l~~CPvCR~~i~~ 331 (338)
....|.||++...+-+++||+|. +|..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 35689999999999889999998 99999875 4689999998864
No 24
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.18 E-value=1.2e-06 Score=61.75 Aligned_cols=42 Identities=29% Similarity=0.590 Sum_probs=35.2
Q ss_pred ccccccccccCcc---eEEeC-CCCcccchhHHhcC----CCCCCCCCCCC
Q 019604 288 SRLCRNCRKEESC---VLLLP-CRHLCLCTVCGSSL----HTCPVCKSPKT 330 (338)
Q Consensus 288 ~~~C~vC~~~~~~---vvLlP-CrHlclC~~C~~~l----~~CPvCR~~i~ 330 (338)
...|.||++.... ++.+| |+|. +|..|...+ ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4579999988666 77888 9998 999999874 78999998764
No 25
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.1e-06 Score=65.80 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=37.7
Q ss_pred cccccccccccC---cceEEeCCCCcccchhHHhcC----CCCCCCCCCCCceEE
Q 019604 287 GSRLCRNCRKEE---SCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTVSVH 334 (338)
Q Consensus 287 ~~~~C~vC~~~~---~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~~V~ 334 (338)
....|.||++.. ..+.++||+|. +|..|...+ ..||+||.++.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 346799999864 45667799999 999998764 689999999876543
No 26
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.15 E-value=1.2e-06 Score=86.74 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=43.4
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhc-----CCCCCCCCCCCCceEEEee
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSS-----LHTCPVCKSPKTVSVHVNM 337 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~~V~V~l 337 (338)
...|.||++...+.+++||||. +|..|... ...||+||.++.....|.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 4689999999999999999999 69999874 4799999999998877754
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.5e-06 Score=64.43 Aligned_cols=44 Identities=27% Similarity=0.598 Sum_probs=38.3
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhc----------CCCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSS----------LHTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~----------l~~CPvCR~~i~~ 331 (338)
....|.||++...+.+++||+|. +|..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45689999999999888999998 99999876 4689999998874
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=1e-06 Score=63.43 Aligned_cols=43 Identities=37% Similarity=0.937 Sum_probs=37.6
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhcC-CCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-HTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-~~CPvCR~~i~~ 331 (338)
...|.||++...+-+++||+|. +|..|.... ..||+||..+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 4679999999999999999998 999998764 689999998763
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.5e-06 Score=63.82 Aligned_cols=45 Identities=20% Similarity=0.503 Sum_probs=38.6
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
.....|.||++...+.+.+||+|. +|..|...+ ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 346789999999888888999999 999998753 589999998764
No 30
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.11 E-value=1.2e-06 Score=68.90 Aligned_cols=44 Identities=32% Similarity=0.557 Sum_probs=36.9
Q ss_pred cccccccccccCcc---eEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESC---VLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~---vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
....|.||++.... ++.+||+|. ||..|...+ ..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999987655 888999997 999998774 789999998865
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.09 E-value=2.9e-06 Score=63.98 Aligned_cols=45 Identities=27% Similarity=0.692 Sum_probs=38.5
Q ss_pred CCcccccccccccCcceEEeC-CCCcccchhHHhcC------CCCCCCCCCCC
Q 019604 285 SGGSRLCRNCRKEESCVLLLP-CRHLCLCTVCGSSL------HTCPVCKSPKT 330 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLlP-CrHlclC~~C~~~l------~~CPvCR~~i~ 330 (338)
......|.||++...+-+.+| |+|. +|..|...+ ..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345678999999999999999 9998 999998764 48999999753
No 32
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=1.9e-06 Score=64.83 Aligned_cols=44 Identities=27% Similarity=0.665 Sum_probs=35.9
Q ss_pred cccccccccccC---cceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEE---SCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~---~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
....|.||++.. ..++.+||+|. +|..|...+ ..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 346799999653 44688999998 999998874 789999998864
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=3.6e-06 Score=59.64 Aligned_cols=39 Identities=26% Similarity=0.669 Sum_probs=33.8
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-------CCCCCC
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-------HTCPVC 325 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-------~~CPvC 325 (338)
.....|.||++...+.+++||+|. +|..|...+ ..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 345689999999999999999999 999998764 689998
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.96 E-value=2.1e-06 Score=62.82 Aligned_cols=42 Identities=31% Similarity=0.770 Sum_probs=33.2
Q ss_pred cccccccc----cCcc-eEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 289 RLCRNCRK----EESC-VLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 289 ~~C~vC~~----~~~~-vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
..|.||++ ++.. ++++||||. +|..|...+ ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 46999999 2322 267899999 999998775 579999998864
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.96 E-value=2.6e-06 Score=70.05 Aligned_cols=43 Identities=21% Similarity=0.496 Sum_probs=37.7
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
...|.||++...+-+.+||||. +|..|...+ ..||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999999999999999999 999998653 489999999875
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.95 E-value=4.2e-06 Score=67.82 Aligned_cols=45 Identities=29% Similarity=0.580 Sum_probs=38.9
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
.....|.||++...+-+.+||||. +|..|...+ ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345789999999999999999999 999999775 489999998753
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.93 E-value=4.7e-06 Score=64.74 Aligned_cols=43 Identities=28% Similarity=0.738 Sum_probs=37.6
Q ss_pred CcccccccccccCcceEEeC-CCCcccchhHHhcC------CCCCCCCCCC
Q 019604 286 GGSRLCRNCRKEESCVLLLP-CRHLCLCTVCGSSL------HTCPVCKSPK 329 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlP-CrHlclC~~C~~~l------~~CPvCR~~i 329 (338)
.....|.||++-..+-+++| |||. +|..|...+ ..||+||.++
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 44678999999999999999 9999 999998653 4899999986
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.90 E-value=3.1e-06 Score=65.65 Aligned_cols=46 Identities=22% Similarity=0.609 Sum_probs=36.9
Q ss_pred cccccccccccC--cceEEeC--CCCcccchhHHhcC-----CCCCCCCCCCCceE
Q 019604 287 GSRLCRNCRKEE--SCVLLLP--CRHLCLCTVCGSSL-----HTCPVCKSPKTVSV 333 (338)
Q Consensus 287 ~~~~C~vC~~~~--~~vvLlP--CrHlclC~~C~~~l-----~~CPvCR~~i~~~V 333 (338)
+...|.||++.. .+..++| |||. +|..|...+ ..||+||.++....
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 356799999966 4567777 9998 999998775 48999999987643
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=3.6e-06 Score=67.34 Aligned_cols=43 Identities=28% Similarity=0.598 Sum_probs=37.0
Q ss_pred ccccccccccCcceEEeCCCCcccchhHHhcC-------CCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-------HTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 331 (338)
...|.||++...+.+.+||||. +|..|...+ ..||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4579999999999888999998 999998763 279999998764
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.85 E-value=5.5e-06 Score=65.46 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=37.6
Q ss_pred cccccccccccCcceEEe-CCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLL-PCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLl-PCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
....|.||++...+-+.+ ||||. +|..|...+ ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 346899999998888777 99999 999998763 689999998874
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.85 E-value=5e-06 Score=66.33 Aligned_cols=44 Identities=25% Similarity=0.533 Sum_probs=38.3
Q ss_pred cccccccccccCcceEE-eCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLL-LPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvL-lPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
....|.||++...+-+. +||||. +|..|...+ ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35689999999999988 999999 999998764 589999998753
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.83 E-value=8.1e-06 Score=61.52 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=38.6
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
.....|.||++-..+-+.+||||. +|..|...+ ..||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 446789999999999899999999 999998653 579999998864
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.82 E-value=7.6e-06 Score=65.73 Aligned_cols=44 Identities=20% Similarity=0.482 Sum_probs=38.4
Q ss_pred cccccccccccCcceEEe-CCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLL-PCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLl-PCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
....|.||++...+-+.+ ||||. +|..|...+ ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 456899999998888887 99999 999998774 689999999875
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.81 E-value=6.4e-06 Score=70.84 Aligned_cols=43 Identities=21% Similarity=0.515 Sum_probs=37.7
Q ss_pred cccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCce
Q 019604 289 RLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTVS 332 (338)
Q Consensus 289 ~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~~ 332 (338)
..|.||++...+-+.+||+|. +|..|...+ ..||+||.++...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 469999999999999999998 999998764 3799999998754
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.80 E-value=7.8e-06 Score=70.37 Aligned_cols=44 Identities=20% Similarity=0.543 Sum_probs=37.4
Q ss_pred CcccccccccccCcceEEe-CCCCcccchhHHhcC-----CCCCCCCCCCC
Q 019604 286 GGSRLCRNCRKEESCVLLL-PCRHLCLCTVCGSSL-----HTCPVCKSPKT 330 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLl-PCrHlclC~~C~~~l-----~~CPvCR~~i~ 330 (338)
.....|.||++...+.+.+ ||+|. +|..|...+ ..||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3456899999998888777 99998 999998774 57999999885
No 46
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=1.5e-05 Score=57.75 Aligned_cols=39 Identities=23% Similarity=0.662 Sum_probs=33.8
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-------CCCCCC
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-------HTCPVC 325 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-------~~CPvC 325 (338)
.....|.||++...+.+++||+|. +|..|...+ ..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 345789999999999999999999 999998764 379998
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.71 E-value=1.6e-05 Score=65.05 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=39.3
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
.....|.||++...+-+.+||+|. +|..|...+ ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 446789999999999899999999 999998764 499999998875
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.69 E-value=1.3e-05 Score=65.53 Aligned_cols=43 Identities=30% Similarity=0.674 Sum_probs=38.1
Q ss_pred cccccccccccCcceEEe-CCCCcccchhHHhcC--CCCCCCCCCCC
Q 019604 287 GSRLCRNCRKEESCVLLL-PCRHLCLCTVCGSSL--HTCPVCKSPKT 330 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLl-PCrHlclC~~C~~~l--~~CPvCR~~i~ 330 (338)
....|.||++-..+-+++ ||||. +|..|...+ ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 356899999999999988 99999 999999886 57999999875
No 49
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.68 E-value=8.8e-05 Score=66.24 Aligned_cols=45 Identities=16% Similarity=-0.068 Sum_probs=37.9
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
+....|.||++-..+=|++||||. +|..|-... ..||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 345789999999999999999998 999996552 369999998764
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.64 E-value=1.1e-05 Score=64.92 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=32.1
Q ss_pred cccccccccC------------------cceEEeCCCCcccchhHHhcC---------CCCCCCCCCCCc
Q 019604 289 RLCRNCRKEE------------------SCVLLLPCRHLCLCTVCGSSL---------HTCPVCKSPKTV 331 (338)
Q Consensus 289 ~~C~vC~~~~------------------~~vvLlPCrHlclC~~C~~~l---------~~CPvCR~~i~~ 331 (338)
..|.||++.. ..+.++||+|. ||..|...+ ..||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3688887764 23448999998 999997653 489999988753
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.63 E-value=1.4e-05 Score=64.91 Aligned_cols=44 Identities=27% Similarity=0.673 Sum_probs=36.9
Q ss_pred cccccccccccCcce-------EEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCV-------LLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~v-------vLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
+...|.||++...+- +++||||. +|..|...+ ..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 356899999876654 88999997 999999764 699999998874
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.59 E-value=2.3e-05 Score=63.53 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=38.3
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
....|.||++...+.+.+||||. +|..|...+ ..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 35689999999999999999999 999998653 589999999864
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.56 E-value=2.7e-05 Score=63.16 Aligned_cols=50 Identities=24% Similarity=0.587 Sum_probs=40.0
Q ss_pred cccccccccccCcce-------EEeCCCCcccchhHHhcC----CCCCCCCCCCC--ceEEEee
Q 019604 287 GSRLCRNCRKEESCV-------LLLPCRHLCLCTVCGSSL----HTCPVCKSPKT--VSVHVNM 337 (338)
Q Consensus 287 ~~~~C~vC~~~~~~v-------vLlPCrHlclC~~C~~~l----~~CPvCR~~i~--~~V~V~l 337 (338)
+...|.||++..... +++||+|. +|..|...+ ..||+||..+. ..+.+|+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 456799999876654 88999999 999998763 89999999876 3455554
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=4.1e-05 Score=58.93 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=23.9
Q ss_pred eEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 301 VLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 301 vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
+++.+|+|. ++..|.... .+||+||.++..
T Consensus 43 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 43 VVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp EEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred EEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 344459999 999998763 689999998753
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.35 E-value=0.00051 Score=62.18 Aligned_cols=44 Identities=16% Similarity=-0.047 Sum_probs=37.9
Q ss_pred cccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 287 GSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
....|.||++-..+-|++||||. +|..|.... ..||+|+.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45689999999999999999999 999997653 349999998864
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.18 E-value=0.00018 Score=61.98 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=39.5
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCCCc
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPKTV 331 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 331 (338)
.....|.||++-..+-+.+||||. +|..|...+ ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 456789999999988899999999 999999774 499999998876
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.13 E-value=0.00051 Score=55.11 Aligned_cols=46 Identities=17% Similarity=0.051 Sum_probs=39.4
Q ss_pred CCcccccccccccCcceEEeCCC-CcccchhHHhcC----CCCCCCCCCCCc
Q 019604 285 SGGSRLCRNCRKEESCVLLLPCR-HLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLlPCr-HlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
.+....|.||++-..+=|++||| |. +|..|.... .+||+|+.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34567899999999999999999 98 999997663 689999998764
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.11 E-value=0.00039 Score=56.01 Aligned_cols=46 Identities=11% Similarity=-0.107 Sum_probs=40.0
Q ss_pred CCcccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 285 SGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
.+....|.||++-..+=|++||||. +|..|-... .+||+|+.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4567899999999999999999999 999997663 689999998764
No 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.10 E-value=5.6e-05 Score=64.39 Aligned_cols=43 Identities=26% Similarity=0.638 Sum_probs=37.4
Q ss_pred CcccccccccccCcceEEeCCCCcccchhHHhcC-----CCCCCCCCCC
Q 019604 286 GGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL-----HTCPVCKSPK 329 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l-----~~CPvCR~~i 329 (338)
.....|.||++-..+-+.+||||. +|..|...+ ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 456789999998888888999999 999998874 4899999975
No 60
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.08 E-value=0.00039 Score=54.12 Aligned_cols=46 Identities=11% Similarity=-0.132 Sum_probs=39.6
Q ss_pred CCcccccccccccCcceEEeCCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 285 SGGSRLCRNCRKEESCVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
......|.||++-..+=|++||||. +|..|-... .+||+|+.++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3456789999999999999999999 999997653 799999998764
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.03 E-value=0.00028 Score=57.66 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=25.5
Q ss_pred ceEEeCCCCcccchhHHhcC----CCCCCCCCCCC
Q 019604 300 CVLLLPCRHLCLCTVCGSSL----HTCPVCKSPKT 330 (338)
Q Consensus 300 ~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i~ 330 (338)
.++++||+|. ++..|.... ..||+||..+.
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 3688999999 999999873 78999999853
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.57 E-value=0.0015 Score=50.72 Aligned_cols=43 Identities=28% Similarity=0.699 Sum_probs=34.1
Q ss_pred ccccccccccC--cceEEeCCC-----CcccchhHHhcC------CCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEE--SCVLLLPCR-----HLCLCTVCGSSL------HTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~--~~vvLlPCr-----HlclC~~C~~~l------~~CPvCR~~i~~ 331 (338)
...|.||++.. .+.+++||+ |. +...|...+ ..||+||..+.-
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 46799999643 456789997 88 999998875 489999998754
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.55 E-value=0.00037 Score=58.18 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred ceEEeCCCCcccchhHHhcC----CCCCCCCCCC
Q 019604 300 CVLLLPCRHLCLCTVCGSSL----HTCPVCKSPK 329 (338)
Q Consensus 300 ~vvLlPCrHlclC~~C~~~l----~~CPvCR~~i 329 (338)
.++++||+|. ++..|.... ..||+||.++
T Consensus 78 ~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 78 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ----------------------------------
T ss_pred ccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 3455799999 999999874 6899999975
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.21 E-value=0.0029 Score=51.82 Aligned_cols=45 Identities=24% Similarity=0.663 Sum_probs=32.1
Q ss_pred ccccccccC-cceEEeCCCCcccchhHHhc-----CCCCCCCCCCCCceEEE
Q 019604 290 LCRNCRKEE-SCVLLLPCRHLCLCTVCGSS-----LHTCPVCKSPKTVSVHV 335 (338)
Q Consensus 290 ~C~vC~~~~-~~vvLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~~V~V 335 (338)
.|..|.--- .-.-++||.|. +|.+|+.. .+.||+|+.+|...=.+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 355564332 23457899995 99999954 47999999998876543
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.93 E-value=0.0039 Score=49.07 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=35.1
Q ss_pred CcccccccccccCcceEEeC-CCCcccchhHHhcC----------CCCCC--CCCC
Q 019604 286 GGSRLCRNCRKEESCVLLLP-CRHLCLCTVCGSSL----------HTCPV--CKSP 328 (338)
Q Consensus 286 ~~~~~C~vC~~~~~~vvLlP-CrHlclC~~C~~~l----------~~CPv--CR~~ 328 (338)
.....|.||++-..+=|.+| |||. +|..|...+ ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34578999999999999997 9999 999997653 38999 9854
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.74 E-value=0.0025 Score=49.83 Aligned_cols=40 Identities=28% Similarity=0.717 Sum_probs=29.7
Q ss_pred ccccccccccCcc--e-EEeCCCCcccchhHHhcC------------CCCCC--CCCC
Q 019604 288 SRLCRNCRKEESC--V-LLLPCRHLCLCTVCGSSL------------HTCPV--CKSP 328 (338)
Q Consensus 288 ~~~C~vC~~~~~~--v-vLlPCrHlclC~~C~~~l------------~~CPv--CR~~ 328 (338)
...|.||++.... + .|.||+|. +|..|.... -.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4579999986432 2 33489999 999996441 37999 9987
No 67
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.79 E-value=0.68 Score=41.65 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=43.2
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHhhHHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEAT----ANALRTNLEQVL 226 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~----a~~Lr~~LeQ~l 226 (338)
.+.|.||+.+.+++.+|..++.+|..|.+.|+.+......- .+.|...|.++.
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988766544 566666555554
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.53 E-value=1.4 Score=36.57 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=72.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 138 LISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANA 217 (338)
Q Consensus 138 ~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~ 217 (338)
=|+..+++|+.++++.|.+...+ ..-.....-..+.||...+..+-.|..+||.|+..|+..-+.++...+....
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~-----~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQ-----YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 36777888888888888776642 2222333455778999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHh
Q 019604 218 LRTNLEQVLASAA 230 (338)
Q Consensus 218 Lr~~LeQ~l~~~~ 230 (338)
+-+.|.+++...+
T Consensus 82 ~E~k~n~aiErna 94 (111)
T 2v66_B 82 FEQRLNQAIERNA 94 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.49 E-value=0.1 Score=36.30 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=26.1
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQ 209 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak 209 (338)
.|.....+..+|.|||+|+.-|..|+++.+.+-+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3344444456899999999999999999887643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.026 Score=53.40 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=36.9
Q ss_pred CCcccccccccccCcceEE-eCCCCcccchhHHhcC------CCCCC--CCCCCC
Q 019604 285 SGGSRLCRNCRKEESCVLL-LPCRHLCLCTVCGSSL------HTCPV--CKSPKT 330 (338)
Q Consensus 285 ~~~~~~C~vC~~~~~~vvL-lPCrHlclC~~C~~~l------~~CPv--CR~~i~ 330 (338)
......|.||+.-..+=|. ..|||. +|..|...+ ..||+ |+..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456799999999888886 499997 999998763 36999 998764
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.80 E-value=0.069 Score=39.09 Aligned_cols=43 Identities=19% Similarity=0.401 Sum_probs=29.9
Q ss_pred ccccccccccCcceEEeCCCCc----ccchhHHhcC------CCCCCCCCCCC
Q 019604 288 SRLCRNCRKEESCVLLLPCRHL----CLCTVCGSSL------HTCPVCKSPKT 330 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCrHl----clC~~C~~~l------~~CPvCR~~i~ 330 (338)
...|.||++....-+++||.+. .+=..|.... ..||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4579999987666678998642 1334465542 68999998764
No 72
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.15 E-value=5.7 Score=35.64 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=64.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 019604 141 QHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRT 220 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~ 220 (338)
..+.+|+..+++.|.+.-.+ ..-....+-..+.||...+..+..|..+|+.|+.-|+..-...+...+....+..
T Consensus 63 ~~~~~L~~E~e~~k~K~~~~-----~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~ 137 (189)
T 2v71_A 63 ADNQRLKYEVEALKEKLEHQ-----YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQ 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence 33555555555555444321 1112234556788899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHh
Q 019604 221 NLEQVLASAA 230 (338)
Q Consensus 221 ~LeQ~l~~~~ 230 (338)
.|.+++...+
T Consensus 138 kln~aiEr~a 147 (189)
T 2v71_A 138 RLNQAIERNA 147 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=91.12 E-value=0.097 Score=38.28 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=36.5
Q ss_pred cccccccccCcceEEe-CCCCcccchhHHhcC----CCCCCCCCCCCc
Q 019604 289 RLCRNCRKEESCVLLL-PCRHLCLCTVCGSSL----HTCPVCKSPKTV 331 (338)
Q Consensus 289 ~~C~vC~~~~~~vvLl-PCrHlclC~~C~~~l----~~CPvCR~~i~~ 331 (338)
..|.+|++-..+-++. ||||. +|..|...+ .+||+++.++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999998899999 99998 999998875 679999998754
No 74
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.78 E-value=1.3 Score=32.82 Aligned_cols=35 Identities=40% Similarity=0.401 Sum_probs=29.9
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
..+.+.+++.+...|.+|+.++.+|..|.+.|+.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999999998765
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.04 E-value=6.5 Score=39.08 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 019604 143 MEKVRMEVEERKKRQV---------RIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEA 213 (338)
Q Consensus 143 ~ErLR~~L~E~R~rq~---------r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA 213 (338)
...++..+++.+++.. ..-+..+...+..+...++.++++..+...++++.++++..|...|+..-+....
T Consensus 479 l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 558 (597)
T 3oja_B 479 LQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRA 558 (597)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhh
Confidence 4445555555554433 1334555556666666677777776666667777777777888888877776666
Q ss_pred HHHHHHhhHHHHHH
Q 019604 214 TANALRTNLEQVLA 227 (338)
Q Consensus 214 ~a~~Lr~~LeQ~l~ 227 (338)
...-|+..+++..+
T Consensus 559 ~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 559 KQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555554433
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.83 E-value=13 Score=36.90 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 019604 144 EKVRMEVEERKKRQ 157 (338)
Q Consensus 144 ErLR~~L~E~R~rq 157 (338)
+++...+++.++++
T Consensus 505 ~~l~~~~~~~~~~~ 518 (597)
T 3oja_B 505 DNLNKVFTHLKERQ 518 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 44444444444333
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.81 E-value=11 Score=36.65 Aligned_cols=26 Identities=8% Similarity=0.264 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019604 132 QFDIDRLISQHMEKVRMEVEERKKRQ 157 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~~L~E~R~rq 157 (338)
...+.++|+.+.+++++.+.+.|++-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHh
Confidence 34566667777777777777777654
No 78
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.88 E-value=2.6 Score=41.44 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=49.4
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
.++.++++||+.+.++..+|++.++++..|.+.+...-...|..---|++.|+.+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788999999999999999999999999999999999988888888888887765
No 79
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=82.38 E-value=9.3 Score=29.75 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhh----HHHHHHHhhhhHHHH-------HHHHHHHHHHHHH
Q 019604 160 IIMDVIEEGVMKKLKAK----EDEIEKIGKLNWALE-------ERVKSLCIENQIW 204 (338)
Q Consensus 160 ~ll~avE~~v~~rLReK----E~EiEr~~r~n~ELE-------Erlrql~~E~q~W 204 (338)
+|++|||..+.+||||+ -+||+-+++-..||. +-+.+|..|-..|
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l 58 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEV 58 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 47788888888887764 567777777666654 4455555555555
No 80
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=81.46 E-value=12 Score=30.40 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.5
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRD 206 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~ 206 (338)
..|+|+.+.||++++..|. .|-.|+.+|+.
T Consensus 64 ~~~v~eLe~everL~~ENq-------~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENL-------QLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcc
Confidence 5788999999999877776 45578888864
No 81
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.60 E-value=5.3 Score=32.99 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHhhHHHHHH
Q 019604 184 GKLNWALEERVKSLCIENQIWRDLAQSNEATANA----LRTNLEQVLA 227 (338)
Q Consensus 184 ~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~----Lr~~LeQ~l~ 227 (338)
-|++.+|..++.+|..|...|+.+-......++. |...|.++..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~ 49 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRA 49 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999998887765444 5555555543
No 82
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.51 E-value=14 Score=31.25 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
-++.+...|++++.+++.+|+.++.+|+.|..
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888999999999999877653
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.75 E-value=35 Score=33.15 Aligned_cols=58 Identities=9% Similarity=0.060 Sum_probs=42.3
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
...+.|.|++++.+...+..+++.++..|++.-+............-+.+|+.+..+-
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 3455666777777777777888888888888888888777777766677777666543
No 84
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=77.69 E-value=2.9 Score=27.84 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=23.5
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
.+|--+--.+|+.+.|+|+-|+++++.|+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 35556677899999999999999998764
No 85
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=77.48 E-value=0.63 Score=37.80 Aligned_cols=46 Identities=33% Similarity=0.876 Sum_probs=37.1
Q ss_pred cccccccccccCcceEEeCCC-CcccchhHHhcC----CCCCCCCCCCCceEEE
Q 019604 287 GSRLCRNCRKEESCVLLLPCR-HLCLCTVCGSSL----HTCPVCKSPKTVSVHV 335 (338)
Q Consensus 287 ~~~~C~vC~~~~~~vvLlPCr-HlclC~~C~~~l----~~CPvCR~~i~~~V~V 335 (338)
..--|+.|+-...+.| -|. |+ +|..|-..| ..||||..++...++|
T Consensus 27 G~~nCKsCWf~~k~LV--~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLV--ECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSSEE--ECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCCee--eecchh-hHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3457999999888655 476 66 999999987 7999999988777655
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=76.27 E-value=10 Score=27.51 Aligned_cols=18 Identities=39% Similarity=0.446 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019604 189 ALEERVKSLCIENQIWRD 206 (338)
Q Consensus 189 ELEErlrql~~E~q~Wq~ 206 (338)
+|+.++..|..|+..|..
T Consensus 26 ~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666666643
No 87
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=75.43 E-value=13 Score=29.67 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=56.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH------HHHHHhhH
Q 019604 140 SQHMEKVRMEVEERKKRQVRIIMDVI-EEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIW------RDLAQSNE 212 (338)
Q Consensus 140 ~~q~ErLR~~L~E~R~rq~r~ll~av-E~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~W------q~~Ak~nE 212 (338)
+...++|+.-+.+..+.|.+.|-++- +..+.++ .|.-+..+.++...+..+|+.|..++..- -...+...
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~---l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 94 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEE---LEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK 94 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 44456677888888888887654221 2333333 45555566666777899999988776531 11235678
Q ss_pred HHHHHHHhhHHHHHHH
Q 019604 213 ATANALRTNLEQVLAS 228 (338)
Q Consensus 213 A~a~~Lr~~LeQ~l~~ 228 (338)
+.+++|+..|..++..
T Consensus 95 ~q~~~L~~kf~e~m~~ 110 (127)
T 1ez3_A 95 TQHSTLSRKFVEVMSE 110 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999999998864
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=74.23 E-value=37 Score=28.32 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHH---HHHHHhhHHHHHHHhhhhHHHH
Q 019604 121 GNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERK------KRQVRIIMDVIEEGV---MKKLKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 121 ~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R------~rq~r~ll~avE~~v---~~rLReKE~EiEr~~r~n~ELE 191 (338)
-|+|.++ +.=..+-++|+.|.-+-+..|.+.- .+-+..|..+++... .+++.+.+.||..++.+..+.+
T Consensus 14 ~dGLrAq--~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 14 RDGLRAV--MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555543 3445678888888777666666554 223344444554422 2356666777777666666666
Q ss_pred HHHHHHHHHHH
Q 019604 192 ERVKSLCIENQ 202 (338)
Q Consensus 192 Erlrql~~E~q 202 (338)
+.+++|..+++
T Consensus 92 ae~erlr~~~~ 102 (121)
T 3mq7_A 92 AEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 66666666665
No 89
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=74.03 E-value=16 Score=30.49 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 019604 143 MEKVRMEVEERKKRQVRIIMDVIEEG---VMKKLKAKEDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 143 ~ErLR~~L~E~R~rq~r~ll~avE~~---v~~rLReKE~EiEr~~r~n~ELEErlr 195 (338)
.+-|+..|++..-+. ...+.-++.- .-.+|+.+++|+|+.++.|.+|..|+.
T Consensus 55 V~tL~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 55 VMALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 456666666644332 2233344322 235677777777777777777776654
No 90
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=73.90 E-value=22 Score=27.91 Aligned_cols=50 Identities=24% Similarity=0.435 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 019604 143 MEKVRMEVEERKKRQVRIIMDVIEE--GVMKKLKAKEDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 143 ~ErLR~~L~E~R~rq~r~ll~avE~--~v~~rLReKE~EiEr~~r~n~ELEErlr 195 (338)
.++-|..|.|+||. +|-.+++. ..-.++-.|++||..+...|.+|.+-+.
T Consensus 26 se~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 26 SSQYWKEVAEKRRK---ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888764 33344443 3445566777777777766666655443
No 91
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.49 E-value=25 Score=27.68 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=18.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
.+++.+.+.|..|..+|.+|..|.+.++.+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777777666665444
No 92
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.52 E-value=25 Score=25.58 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=25.6
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~A 208 (338)
+-+.+.+++.+...|.+|...+..|..|.+.|..+-
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777776553
No 93
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.03 E-value=25 Score=25.31 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~ 207 (338)
..+.+.+++.+...|.+|...+..|..|...|+.+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677777777777777777777776543
No 94
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.74 E-value=2.5 Score=32.78 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=25.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~E~q~Wq~~A 208 (338)
+|+|-++-+..||++|+.+|+.||...+..|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4666677888999999999999998886654
No 95
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.72 E-value=50 Score=28.65 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=27.1
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSLCIENQ----IWRDL 207 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql~~E~q----~Wq~~ 207 (338)
-..-.|+.-++-....+|++++.|..||+ -|..+
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888999999999999995 67554
No 96
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=69.63 E-value=17 Score=28.66 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHhhhhHHHHHH
Q 019604 144 EKVRMEVEERKKRQVRIIMDVIEE--GVMKKLKAKEDEIEKIGKLNWALEER 193 (338)
Q Consensus 144 ErLR~~L~E~R~rq~r~ll~avE~--~v~~rLReKE~EiEr~~r~n~ELEEr 193 (338)
++-|..|.|+||.- |-.++++ ..-+.+-.|++||.++...|.+|.+-
T Consensus 19 e~YWk~lAE~Rr~A---L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 19 SQYWKEVAEQRRKA---LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp CTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887643 3344442 33455566677777666655555543
No 97
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=69.50 E-value=11 Score=26.15 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
.++---+.||++...+..+|+.++++|+..+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455578899999999999999999998654
No 98
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=69.33 E-value=5.1 Score=26.88 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=22.2
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
|+.+.|+.+|.+-.++++|+..+.+|...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56677888888888899998877766543
No 99
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=68.37 E-value=0.97 Score=44.52 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=32.1
Q ss_pred ccccccccccCcc---e---E--EeCCCCcccchhHHhcC---------------CCCCCCCCCCCceEE
Q 019604 288 SRLCRNCRKEESC---V---L--LLPCRHLCLCTVCGSSL---------------HTCPVCKSPKTVSVH 334 (338)
Q Consensus 288 ~~~C~vC~~~~~~---v---v--LlPCrHlclC~~C~~~l---------------~~CPvCR~~i~~~V~ 334 (338)
...|.||++.... + + -.+|+|. +-..|-..+ ..||.||.+|..++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 4569999975443 1 1 2378888 778887542 479999999886643
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.71 E-value=13 Score=28.56 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=18.5
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
||+||+-|+...++..|+++.++.|..|-+-.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666665555555555555555554443
No 101
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=66.31 E-value=6.6 Score=26.37 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=17.9
Q ss_pred HHHHhhHHHHHHHhhhhHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEE 192 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEE 192 (338)
+-+.+|++||.++..+|.+|.|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 3456799999999999988875
No 102
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.99 E-value=16 Score=26.41 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRD 206 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~ 206 (338)
.++.+.+.+++.+...|.+|...+..|..|....+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888999999999999999999998876543
No 103
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=64.27 E-value=83 Score=28.41 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=24.7
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRT 220 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~ 220 (338)
+.+...||+.+.++...||+.+..+..+....+..-...++....++.
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666655555555444443333333333333
No 104
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=63.79 E-value=7.6 Score=26.01 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=18.7
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql~ 198 (338)
|+.+.|+-+|.+..+|++|+..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777777778888887665553
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.55 E-value=42 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019604 188 WALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 188 ~ELEErlrql~~E~q~Wq~~ 207 (338)
..|.....+|..|-..|+.+
T Consensus 51 ~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34777778888899999765
No 106
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.80 E-value=14 Score=27.88 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=29.2
Q ss_pred ccccccccccCcceE-EeCCCCcccchhHHhcC------CCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESCVL-LLPCRHLCLCTVCGSSL------HTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~vv-LlPCrHlclC~~C~~~l------~~CPvCR~~i~~ 331 (338)
...|.||++--..-. ..-|+|. +=..|..++ .+||+||.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 457888887543222 2267777 667787642 689999988654
No 107
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.79 E-value=47 Score=25.05 Aligned_cols=13 Identities=31% Similarity=0.240 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 019604 190 LEERVKSLCIENQ 202 (338)
Q Consensus 190 LEErlrql~~E~q 202 (338)
||.+|..|..+++
T Consensus 34 LE~~v~~le~~~~ 46 (70)
T 1gd2_E 34 LETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 108
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=61.58 E-value=38 Score=28.86 Aligned_cols=87 Identities=10% Similarity=0.167 Sum_probs=50.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHH------HHHHHHhhH
Q 019604 140 SQHMEKVRMEVEERKKRQVRIIMDVIE-EGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQI------WRDLAQSNE 212 (338)
Q Consensus 140 ~~q~ErLR~~L~E~R~rq~r~ll~avE-~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~------Wq~~Ak~nE 212 (338)
+...++|+.-+.+..+.|.+.|..+-. ..+.+ +.+.-+..+.++...+..+|+.|..++.. +-..-+...
T Consensus 49 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~---~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 125 (180)
T 1s94_A 49 RAMIDKISDNVDAVKKKHSDILSAPQTDDQMKE---ELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRK 125 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-------CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 344556677777777777766543222 22222 33444555666666788888888866431 111223456
Q ss_pred HHHHHHHhhHHHHHHHH
Q 019604 213 ATANALRTNLEQVLASA 229 (338)
Q Consensus 213 A~a~~Lr~~LeQ~l~~~ 229 (338)
+..++|...|..++..-
T Consensus 126 ~q~~~L~~kf~~~m~~y 142 (180)
T 1s94_A 126 TQYSTISRKFVEVMSDY 142 (180)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67889999999888653
No 109
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.48 E-value=43 Score=25.73 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=17.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 019604 179 EIEKIGKLNWALEERVKSLCIENQIWRD 206 (338)
Q Consensus 179 EiEr~~r~n~ELEErlrql~~E~q~Wq~ 206 (338)
+++.+.+.|..|..+|.+|..|...++.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777777766666543
No 110
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=60.90 E-value=38 Score=30.76 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 143 MEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANA 217 (338)
Q Consensus 143 ~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~ 217 (338)
.++-|..|.|+||. +|-.+++ |.+++..+...|++.+..|..|++.-+.+|..-+.+|..
T Consensus 95 se~YWk~lAE~RR~---AL~eaLe------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~v 154 (209)
T 2wvr_A 95 SSQYWKEVAEKRRK---ALYEALK------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAEL 154 (209)
T ss_dssp CTTHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999874 2333333 333333334446666666666666666666555555554
No 111
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.47 E-value=29 Score=35.74 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 019604 129 QEQQFDIDRLISQHMEKVRMEV 150 (338)
Q Consensus 129 ~qQ~~EID~~i~~q~ErLR~~L 150 (338)
++-..+++++++...|.||..+
T Consensus 77 sKnsKdseqy~k~~~E~Lr~rq 98 (562)
T 3ghg_A 77 QKNNKDSHSLTTNIMEILRGDF 98 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTSSHH
T ss_pred HhhchhHHHHHHHHHHHHHHHH
Confidence 3334455555544444444333
No 112
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=59.85 E-value=65 Score=26.70 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=22.9
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhHHH
Q 019604 116 PFSFLGNDMSFQIQEQQFDIDRLISQHMEK 145 (338)
Q Consensus 116 ~~s~l~~~l~~ql~qQ~~EID~~i~~q~Er 145 (338)
++++.+|-|.-+|++=+.+.|.+++.|-++
T Consensus 29 ~~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 29 PFPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778999999999999999999665
No 113
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.55 E-value=67 Score=32.48 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=43.7
Q ss_pred HHHHHHHHHH-----HHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHhhhhHH
Q 019604 124 MSFQIQEQQF-----DIDRLISQHMEK--VRMEVEERKKRQVRIIMDVIEEGVMKKLKAKE-------DEIEKIGKLNWA 189 (338)
Q Consensus 124 l~~ql~qQ~~-----EID~~i~~q~Er--LR~~L~E~R~rq~r~ll~avE~~v~~rLReKE-------~EiEr~~r~n~E 189 (338)
+...+++-+. .||.++.+..++ +...+++.|.++. ++...+.+..+.++ ++++.+..+..+
T Consensus 53 v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn-----~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (501)
T 1wle_A 53 AARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKE-----AVTEAVRALVVNQDNSQVQQDPQYQSLRARGRE 127 (501)
T ss_dssp HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcCccccccccccHHHHHHHHHH
Confidence 3445555443 278888776443 2333333333333 44455544434332 355555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhH
Q 019604 190 LEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLASAAA 231 (338)
Q Consensus 190 LEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~~~ 231 (338)
|.++++.++. ....+...|+..+....+
T Consensus 128 l~~~i~~l~~--------------~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 128 IRKQLTLLYP--------------KEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHhCCC
Confidence 5555555443 333444566666655543
No 114
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.50 E-value=1.6e+02 Score=32.48 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=9.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 019604 177 EDEIEKIGKLNWALEERVKSLC 198 (338)
Q Consensus 177 E~EiEr~~r~n~ELEErlrql~ 198 (338)
++++++..+...+||++..++.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 115
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=57.74 E-value=3.7 Score=31.68 Aligned_cols=29 Identities=21% Similarity=0.623 Sum_probs=22.3
Q ss_pred ccccccccc---CcceEEeCCCCcccchhHHhc
Q 019604 289 RLCRNCRKE---ESCVLLLPCRHLCLCTVCGSS 318 (338)
Q Consensus 289 ~~C~vC~~~---~~~vvLlPCrHlclC~~C~~~ 318 (338)
..|.+|.+. ++...-++|+|. +|..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 579999963 333333999999 99999875
No 116
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.95 E-value=54 Score=23.88 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 019604 168 GVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNL 222 (338)
Q Consensus 168 ~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~L 222 (338)
.++.|-|+|--+- ..+|+.+++.|..||.........-+.-+..|+.-|
T Consensus 12 ~AA~R~R~KKk~~------~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 12 TAATRYRQKKRAE------QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555543332 235888889999999888666655555555555443
No 117
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=56.78 E-value=63 Score=24.62 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=19.5
Q ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q 019604 169 VMKKLKAKEDEIEKIGKLNWALEERVKS 196 (338)
Q Consensus 169 v~~rLReKE~EiEr~~r~n~ELEErlrq 196 (338)
...+|++|.+||++++...--|..+|-+
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999977665555544433
No 118
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=56.21 E-value=32 Score=25.24 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019604 187 NWALEERVKSLCIENQIW 204 (338)
Q Consensus 187 n~ELEErlrql~~E~q~W 204 (338)
..+|+.++.+|..||..+
T Consensus 32 ~~~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345777777777777765
No 119
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.71 E-value=1.9e+02 Score=35.86 Aligned_cols=13 Identities=0% Similarity=0.164 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 019604 127 QIQEQQFDIDRLI 139 (338)
Q Consensus 127 ql~qQ~~EID~~i 139 (338)
+|.+-+.|.|.++
T Consensus 1949 ~L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1949 ELDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455556554
No 120
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.45 E-value=60 Score=26.05 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019604 165 IEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQ 209 (338)
Q Consensus 165 vE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak 209 (338)
+...|-.-.++.++||.++.++...|| .+..+.-.|+.+|-
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA~ 81 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLE----KMQNNSKLLRNKAV 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHH
Confidence 334444445667777777666655555 44555556666553
No 121
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=53.09 E-value=9.5 Score=30.59 Aligned_cols=44 Identities=23% Similarity=0.603 Sum_probs=32.2
Q ss_pred cccccccccccC----cceEEeCCCCc--ccchhHHhc-----CCCCCCCCCCCC
Q 019604 287 GSRLCRNCRKEE----SCVLLLPCRHL--CLCTVCGSS-----LHTCPVCKSPKT 330 (338)
Q Consensus 287 ~~~~C~vC~~~~----~~vvLlPCrHl--clC~~C~~~-----l~~CPvCR~~i~ 330 (338)
....|.||.+.. ---+|+-|..- .+|..|..- -+.||.|.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 457899999862 22267778644 479999876 389999998775
No 122
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=52.16 E-value=1e+02 Score=25.57 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=3.4
Q ss_pred HHHHHHHhh
Q 019604 177 EDEIEKIGK 185 (338)
Q Consensus 177 E~EiEr~~r 185 (338)
|.|+|.+.+
T Consensus 67 e~E~ae~k~ 75 (115)
T 3vem_A 67 ERKMAEVQA 75 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444333
No 123
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=51.60 E-value=1e+02 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=13.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 019604 134 DIDRLISQHMEKVRMEVEERKKRQV 158 (338)
Q Consensus 134 EID~~i~~q~ErLR~~L~E~R~rq~ 158 (338)
.||+ |+..+++||..|+.-+..+-
T Consensus 16 ~Ie~-Lkreie~lk~ele~l~~E~q 39 (120)
T 3i00_A 16 LIER-LYREISGLKAQLENMKTESQ 39 (120)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444 45556666666666544444
No 124
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=51.41 E-value=5.6 Score=37.94 Aligned_cols=42 Identities=19% Similarity=0.526 Sum_probs=32.3
Q ss_pred ccccccccccCcceEEeC----CCC-cccchhHHhcC----CCCCCCCCCC
Q 019604 288 SRLCRNCRKEESCVLLLP----CRH-LCLCTVCGSSL----HTCPVCKSPK 329 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlP----CrH-lclC~~C~~~l----~~CPvCR~~i 329 (338)
...|.||.+.+.-.++.. =|+ +..|.-|...+ -+||.|....
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 457999999998777753 343 45899998875 6999999873
No 125
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=50.65 E-value=2e+02 Score=29.54 Aligned_cols=85 Identities=13% Similarity=0.248 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH------HHH--HHHHHH---HH
Q 019604 141 QHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLC------IEN--QIWRDL---AQ 209 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~------~E~--q~Wq~~---Ak 209 (338)
.+.|+.|++|.+.-+-+.|.= -....+.+-+-....||..+++...++..-+.+.. +|+ .+||.- |+
T Consensus 321 r~~e~a~ael~~a~k~~a~~~--er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~ 398 (551)
T 2b5u_A 321 RNYERARAELNQANEDVARNQ--ERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQ 398 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhh
Confidence 445666666665544443311 01112223344455677777777777776666655 222 389873 33
Q ss_pred hhHHHHHHHHhhHHHHHH
Q 019604 210 SNEATANALRTNLEQVLA 227 (338)
Q Consensus 210 ~nEA~a~~Lr~~LeQ~l~ 227 (338)
--..-++.+.+.++.+..
T Consensus 399 ~~~~dv~~~~a~~d~~~~ 416 (551)
T 2b5u_A 399 RAQTDVNNKQAAFDAAAK 416 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhh
Confidence 323335555555555543
No 126
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=48.86 E-value=30 Score=22.21 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=18.6
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019604 175 AKEDEIEKIGKLNWALEERVKSLCIEN 201 (338)
Q Consensus 175 eKE~EiEr~~r~n~ELEErlrql~~E~ 201 (338)
+.|.|+.++...|-.||..+.||+.|.
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 345666666677777777777777664
No 127
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.38 E-value=84 Score=23.64 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=10.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 019604 180 IEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 180 iEr~~r~n~ELEErlrql~~E~q 202 (338)
.+.+...|..|.+.+..|..|+.
T Consensus 45 ~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 45 HSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555544
No 128
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.11 E-value=98 Score=24.24 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=46.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q 019604 117 FSFLGNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKS 196 (338)
Q Consensus 117 ~s~l~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrq 196 (338)
+..|.+-|++.|++ =|||-.|+..|...+++.+++.... +....-.-+++.-..|+.+...+..|+-.+..
T Consensus 11 mq~LNdRlAsyIdK-----VR~LEqqN~~Le~~i~~l~~~~~~~----~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 11 LQELNDRFANLIDK-----VRFLEQQNKILLAELEQLKGQGKSR----LGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888765 3577778888877777776654322 22222222233334455555555556666666
Q ss_pred HHHHHHHHHH
Q 019604 197 LCIENQIWRD 206 (338)
Q Consensus 197 l~~E~q~Wq~ 206 (338)
+..+...++.
T Consensus 82 l~~~~~~~k~ 91 (93)
T 3s4r_A 82 LAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6665555543
No 129
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=47.40 E-value=36 Score=21.89 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=17.8
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
.|+|+-+++---.+|++|+.+|+.-.|
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666677777777765554
No 130
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=46.82 E-value=37 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=10.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~ 199 (338)
.|...++++-.+++.|++.|..
T Consensus 46 aeY~aak~~q~~~e~rI~~L~~ 67 (158)
T 2p4v_A 46 ADYQYNKKRLREIDRRVRYLTK 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555543
No 131
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=46.11 E-value=90 Score=24.21 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHhhhhHHHHHH
Q 019604 144 EKVRMEVEERKKRQVRIIMDVIEE--GVMKKLKAKEDEIEKIGKLNWALEER 193 (338)
Q Consensus 144 ErLR~~L~E~R~rq~r~ll~avE~--~v~~rLReKE~EiEr~~r~n~ELEEr 193 (338)
++-|..|.|+||. +|-.+++. ..-+.+.+|++||.++...|..|.+-
T Consensus 15 e~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 15 SQYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp CTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777764 34445553 33345566677776655555555443
No 132
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=45.50 E-value=21 Score=30.72 Aligned_cols=6 Identities=33% Similarity=1.348 Sum_probs=2.5
Q ss_pred cchhHH
Q 019604 311 LCTVCG 316 (338)
Q Consensus 311 lC~~C~ 316 (338)
+|..|.
T Consensus 95 VC~~C~ 100 (153)
T 2zet_C 95 VCKSCS 100 (153)
T ss_dssp ECGGGE
T ss_pred hhcccc
Confidence 344444
No 133
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.05 E-value=1.2e+02 Score=24.53 Aligned_cols=22 Identities=23% Similarity=0.048 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 019604 184 GKLNWALEERVKSLCIENQIWR 205 (338)
Q Consensus 184 ~r~n~ELEErlrql~~E~q~Wq 205 (338)
..+..||+..|++|..|||...
T Consensus 64 ~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888887653
No 134
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.38 E-value=57 Score=25.57 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 019604 186 LNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQ 224 (338)
Q Consensus 186 ~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ 224 (338)
+..+++.++..|..||..-+..-..-+..+..|+.-|-|
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788889999988866655555555555555444
No 135
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.87 E-value=78 Score=23.12 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
.++.+.+.+++.+...|.+|...+.+|..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777776666543
No 136
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=42.74 E-value=1.8e+02 Score=25.72 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 122 NDMSFQIQEQQFDIDRLISQH--MEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 122 ~~l~~ql~qQ~~EID~~i~~q--~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
.+|..-++.++.-++.|+..+ ...+...++.. ...+..|.+++..++..+....++-+.+++|..
T Consensus 41 ~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l-------------~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~ 107 (192)
T 2p22_C 41 KEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF-------------RDQFKQLEENFEDLHEQKDKVQALLENARILES 107 (192)
T ss_dssp HHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH-------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 346656666668888888755 33333333333 223344456777777777666666666666666
Q ss_pred HHH-HHHHH--HHhhHHHHHHHHhhHHHHHHHH
Q 019604 200 ENQ-IWRDL--AQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 200 E~q-~Wq~~--Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
|.. .|+.+ +.+.----.+|...|+.+++..
T Consensus 108 ~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~ 140 (192)
T 2p22_C 108 KYVASWQDYHSEFSKKYGDIALKKKLEQNTKKL 140 (192)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 543 34332 1111112357788888877665
No 137
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.04 E-value=1.1e+02 Score=30.80 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=35.0
Q ss_pred HHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019604 135 IDRLISQHME--KVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNE 212 (338)
Q Consensus 135 ID~~i~~q~E--rLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nE 212 (338)
+|.++.+..+ ++...+++.|.++. ++-..+.+..++++ +++.+..+..+|.++++.|+.
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn-----~~sk~i~~~k~~~~-~~~~l~~~~~~l~~~i~~le~------------- 92 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLN-----SVQKEIGKRFKAKE-DAKDLIAEKEKLSNEKKEIIE------------- 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHH-------------
Confidence 7888877543 23334444444433 44444444333332 333333333444444444433
Q ss_pred HHHHHHHhhHHHHHHHHh
Q 019604 213 ATANALRTNLEQVLASAA 230 (338)
Q Consensus 213 A~a~~Lr~~LeQ~l~~~~ 230 (338)
....|...|+..+....
T Consensus 93 -~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 93 -KEAEADKNLRSKINQVG 109 (485)
T ss_dssp -HHHHHHHHHHHHHTTSC
T ss_pred -HHHHHHHHHHHHHHhCC
Confidence 33334445666665543
No 138
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.90 E-value=27 Score=22.97 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=13.4
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql 197 (338)
-+.|+.+|.+..+|.+|+..+.+|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345555555556666666555444
No 139
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.84 E-value=35 Score=22.58 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=15.5
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
|+.+.|+.+|.+-.+|.+||..+.+|
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45556666666666666666655544
No 140
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=40.78 E-value=34 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=10.4
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHH
Q 019604 175 AKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 175 eKE~EiEr~~r~n~ELEErlrql 197 (338)
+.|+-+|.+-.+|.+|+..+.+|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444444444445555444443
No 141
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=40.69 E-value=76 Score=24.34 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 019604 187 NWALEERVKSLCIENQIWRDLAQSNEATANALRT 220 (338)
Q Consensus 187 n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~ 220 (338)
..+++.++..|..||..-+..-..-+..+..|+.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888889888876554444444444443
No 142
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.25 E-value=32 Score=22.58 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql 197 (338)
+.+.|+.+|....++.+|+..+.+|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4445555666566666666555444
No 143
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.13 E-value=61 Score=24.78 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=4.7
Q ss_pred HHhhHHHHHH
Q 019604 173 LKAKEDEIEK 182 (338)
Q Consensus 173 LReKE~EiEr 182 (338)
|+.|++||-.
T Consensus 28 L~~K~eELr~ 37 (72)
T 3nmd_A 28 LQEKIEELRQ 37 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444555444
No 144
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.95 E-value=2.1e+02 Score=28.21 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q 019604 127 QIQEQQFDIDRLISQHMEKVRMEVEER-------------KKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEER 193 (338)
Q Consensus 127 ql~qQ~~EID~~i~~q~ErLR~~L~E~-------------R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEEr 193 (338)
.++|-..++++|++.=.+.||.-+... -++|..-|=..|...+. .||....-|+....+.+-||..
T Consensus 78 ~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 78 NYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666555555544422 22333334444554444 5555555555555555555554
Q ss_pred H
Q 019604 194 V 194 (338)
Q Consensus 194 l 194 (338)
|
T Consensus 157 I 157 (390)
T 1deq_A 157 I 157 (390)
T ss_pred H
Confidence 4
No 145
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.81 E-value=36 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=11.7
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql 197 (338)
.+.|+.+|.+-.+|.+|+..+.+|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444555555555555544443
No 146
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=39.72 E-value=1.9e+02 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHH
Q 019604 124 MSFQIQEQQFDIDRLISQHME---KVRMEVEERKKR 156 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~~q~E---rLR~~L~E~R~r 156 (338)
=..+|++|-.|+...++.+.| |||+...|.++.
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~ 42 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKS 42 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 346789999999999998865 788877777643
No 147
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.56 E-value=86 Score=30.76 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=27.1
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 174 KAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 174 ReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
.+.++|++.+..+..+|++.++++..|...-...-...+..---|++.|+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555666666666655554444333344334455555544
No 148
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.24 E-value=55 Score=23.33 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
..|+++...++..+..+|..|.+-++....|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766665544
No 149
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.28 E-value=55 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=17.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 178 DEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 178 ~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
.|+|.+.+.|.+|..++..|..+.+.-
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666766666666655543
No 150
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=38.27 E-value=37 Score=28.75 Aligned_cols=24 Identities=13% Similarity=0.409 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019604 143 MEKVRMEVEERKKRQVRIIMDVIEE 167 (338)
Q Consensus 143 ~ErLR~~L~E~R~rq~r~ll~avE~ 167 (338)
-++|+.+|++ +......++.++..
T Consensus 12 ~~~L~~el~~-~~~~r~~~~~~i~~ 35 (156)
T 2f23_A 12 YERLMQQLER-ERERLQEATKILQE 35 (156)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3566666666 33333334444443
No 151
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.10 E-value=1.6e+02 Score=23.90 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019604 128 IQEQQFDIDR 137 (338)
Q Consensus 128 l~qQ~~EID~ 137 (338)
|+.-..|||.
T Consensus 45 iq~L~~el~~ 54 (129)
T 3tnu_B 45 IQRLRAEIDN 54 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 152
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=37.74 E-value=73 Score=29.06 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHH
Q 019604 186 LNWALEERVKSL 197 (338)
Q Consensus 186 ~n~ELEErlrql 197 (338)
||.+||+++++|
T Consensus 80 r~~~Le~~L~~L 91 (252)
T 3e98_A 80 RNIEMRHRLSQL 91 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 153
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.70 E-value=1.1e+02 Score=25.31 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=13.7
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
+|..|+.+.+....|...+..+-.|+|.|
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~ 41 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRV 41 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 154
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=37.63 E-value=39 Score=22.35 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=13.7
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
|+.+.|+-+|.+..+|.+|+..+.+|
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34445555555555666666555444
No 155
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=37.23 E-value=33 Score=32.86 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q 019604 166 EEGVMKKLKAKEDEIEKIGKLNWALEERVKS 196 (338)
Q Consensus 166 E~~v~~rLReKE~EiEr~~r~n~ELEErlrq 196 (338)
|..+.+.|+....+++++..+...||..|.+
T Consensus 23 ~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 23 ESTVAGSLRSMKSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp HTTTHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666667655555555555443
No 156
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.96 E-value=1.1e+02 Score=21.73 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 189 ALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 189 ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
+|+.++..|..|+..-+ +.+..|+..+.++.
T Consensus 26 ~Le~~~~~L~~~n~~L~-------~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQ-------SEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 58999999999988763 44555666655554
No 157
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=36.74 E-value=1.8e+02 Score=24.00 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 126 FQIQEQQFDIDRLISQ-HMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEK 182 (338)
Q Consensus 126 ~ql~qQ~~EID~~i~~-q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr 182 (338)
.+|++|...++.|+.. -.+.++..+++.=.+.++.-|-.-+-+-...+.--++||..
T Consensus 59 ~~l~~~g~~~~~~~~~~~~e~~~e~~~~~A~~~vk~~lil~~ia~~e~I~vsdeev~~ 116 (170)
T 2nsa_A 59 NRLKREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEKGISVNDEELEK 116 (170)
T ss_dssp HHHHHHTCHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHcCCCHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4556666677777642 45666666655555555433322222333446666666665
No 158
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.59 E-value=1.7e+02 Score=23.74 Aligned_cols=63 Identities=14% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 132 QFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 132 ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
+.||-.+ +-+...|...|+..+.+- .++|..+..-=..-+.+++.+..+...||+.+.++..|
T Consensus 35 k~Ei~el-rr~iq~L~~el~~l~~~~-----~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 35 KHEISEM-NRMIQRLRAEIDNVKKQC-----ANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444433 334556666666654332 24444443332333555666666666666666665554
No 159
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=36.26 E-value=52 Score=27.91 Aligned_cols=55 Identities=25% Similarity=0.213 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 144 EKVRMEVEERKKRQVRIIMDVIEEGVM-KKLKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 144 ErLR~~L~E~R~rq~r~ll~avE~~v~-~rLReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
++|+.+|++.+.-.--.++.++..+.. .-|.|- .|...++++-..++.|++.|..
T Consensus 12 ~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsEN-aeY~aak~~q~~~e~ri~~Le~ 67 (158)
T 1grj_A 12 EKLREELDFLKSVRRPEIIAAIAEAREHGDLKEN-AEYHAAREQQGFCEGRIKDIEA 67 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHhhHHHHHhccccccc-chhhhHHHHHHHHHHHHHHHHH
Confidence 455555555543222333333333211 111111 3444444444455555555544
No 160
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.22 E-value=1.6e+02 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=12.0
Q ss_pred HHHHhhHHHHHHHhhhhHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALE 191 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELE 191 (338)
+.+...+.+|++..++..+|+
T Consensus 58 ~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 58 KEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345556666777555555554
No 161
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.10 E-value=1.2e+02 Score=21.84 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 019604 187 NWALEERVKSLCIENQIWRDLA 208 (338)
Q Consensus 187 n~ELEErlrql~~E~q~Wq~~A 208 (338)
..+|+.++..|..|+..++...
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999886554
No 162
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.07 E-value=44 Score=22.04 Aligned_cols=24 Identities=17% Similarity=0.204 Sum_probs=11.1
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKS 196 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrq 196 (338)
+-+.|+.+|.+-.+|.+|+..+.+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 334444444444455555544433
No 163
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.16 E-value=48 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=13.6
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 172 KLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 172 rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
|+.+.|+-+|.+-.+|.+|+..+.+|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 44455555555555666665544444
No 164
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.74 E-value=1.4e+02 Score=29.66 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHH-H----HHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q 019604 121 GNDMSFQIQEQQF-D----IDRLISQHMEK--VRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEER 193 (338)
Q Consensus 121 ~~~l~~ql~qQ~~-E----ID~~i~~q~Er--LR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEEr 193 (338)
.+.+..-+.+-.. + +|.++.+..++ +...+++.|.++. ++...+.+..+.+ ++.+.+..+..+|.++
T Consensus 11 ~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n-----~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~ 84 (455)
T 2dq0_A 11 PELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERN-----KIAVEIGKRRKKG-EPVDELLAKSREIVKR 84 (455)
T ss_dssp HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHTSC-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhccc-ccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 019604 194 VKSLCIENQIWRDL 207 (338)
Q Consensus 194 lrql~~E~q~Wq~~ 207 (338)
++.+..+...-...
T Consensus 85 ~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 85 IGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 165
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=34.72 E-value=2.2e+02 Score=24.37 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019604 144 EKVRMEVEERKKRQVRIIMDVIE 166 (338)
Q Consensus 144 ErLR~~L~E~R~rq~r~ll~avE 166 (338)
.++-..|.++|.+.--.+-.++|
T Consensus 64 a~~lk~laekrehe~EvlqKa~E 86 (143)
T 3ryc_E 64 AELLKHLAEKREHEREVIQKAIE 86 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456665555544555554
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.67 E-value=6.1e+02 Score=31.64 Aligned_cols=32 Identities=3% Similarity=0.241 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHH
Q 019604 123 DMSFQIQEQQFDIDRLI--SQHMEKVRMEVEERK 154 (338)
Q Consensus 123 ~l~~ql~qQ~~EID~~i--~~q~ErLR~~L~E~R 154 (338)
+|..+.++-..=+|.|. ..+.+.|+..|++++
T Consensus 1914 el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~ 1947 (3245)
T 3vkg_A 1914 QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN 1947 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443 234555555555443
No 167
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.02 E-value=2.6e+02 Score=25.07 Aligned_cols=8 Identities=25% Similarity=0.725 Sum_probs=4.2
Q ss_pred cccccccc
Q 019604 289 RLCRNCRK 296 (338)
Q Consensus 289 ~~C~vC~~ 296 (338)
..|..|+-
T Consensus 199 ~~C~GC~~ 206 (256)
T 3na7_A 199 QACGGCFI 206 (256)
T ss_dssp TBCTTTCC
T ss_pred CccCCCCe
Confidence 34555554
No 168
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.84 E-value=1.8e+02 Score=32.09 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=12.6
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
+.+++.+++++..+..+|+++++.+..+
T Consensus 908 l~~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 908 YAEAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 169
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.09 E-value=1.2e+02 Score=22.09 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 019604 159 RIIMDVIEEGVMKKLKAKEDEIEKIGKL 186 (338)
Q Consensus 159 r~ll~avE~~v~~rLReKE~EiEr~~r~ 186 (338)
.+|+..|+.- -..--+||.||+|+++.
T Consensus 21 ~~L~~kv~~L-e~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 21 VQLAAKIQHL-EFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444444432 23446788888887665
No 170
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.68 E-value=2e+02 Score=23.41 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 124 MSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEK 182 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr 182 (338)
+...|+.-..|||.+ +-+...|-..|.|...++...+ ..+-.+|-.+|.|+.+
T Consensus 43 lrr~iq~L~~el~~l-~~~~~sLE~~l~e~e~~~~~~l-----~~~q~~i~~lE~eL~~ 95 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQ-LSMKASLENSLEETKGRYCMQL-----AQIQEMIGSVEEQLAQ 95 (131)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 566777777777775 5566667777777766665433 1222334445555554
No 171
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.43 E-value=1.7e+02 Score=22.48 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=22.8
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql~~ 199 (338)
|.+.|+-.+++.++..+|+..++.+..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888889988887754
No 172
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=31.80 E-value=1.9e+02 Score=22.72 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 019604 143 MEKVRMEVEE 152 (338)
Q Consensus 143 ~ErLR~~L~E 152 (338)
.|.|+...-+
T Consensus 44 aENL~katt~ 53 (86)
T 1cxz_B 44 AENLRRATTD 53 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555555
No 173
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.69 E-value=2.3e+02 Score=24.05 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019604 125 SFQIQEQQFDIDRLIS 140 (338)
Q Consensus 125 ~~ql~qQ~~EID~~i~ 140 (338)
+..|=..-..||.||.
T Consensus 63 a~dli~kakqIe~LId 78 (151)
T 1yke_B 63 STDIILKTRQINKLID 78 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333456666664
No 174
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.16 E-value=2.1e+02 Score=23.24 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q 019604 177 EDEIEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 177 E~EiEr~~r~n~ELEErlrql~~ 199 (338)
+.+++.+..+...||+.+.++..
T Consensus 76 ~~~l~~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 76 CMQLAQIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555444443
No 175
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=30.77 E-value=60 Score=26.42 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019604 187 NWALEERVKSLCIENQIWR 205 (338)
Q Consensus 187 n~ELEErlrql~~E~q~Wq 205 (338)
+..|.+++.+|+.|-..|+
T Consensus 98 ~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 98 NKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3447788888888888886
No 176
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.68 E-value=3e+02 Score=26.44 Aligned_cols=13 Identities=8% Similarity=0.386 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 019604 127 QIQEQQFDIDRLI 139 (338)
Q Consensus 127 ql~qQ~~EID~~i 139 (338)
++++.+.++++.+
T Consensus 364 ~l~~~~~~le~~~ 376 (487)
T 3oja_A 364 TLEQKKKALDEQV 376 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554444
No 177
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.16 E-value=63 Score=21.34 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 173 LKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 173 LReKE~EiEr~~r~n~ELEErlrql 197 (338)
|.+.|..+|.+..++.+|+..+.+|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4445555555555555555544443
No 178
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.59 E-value=20 Score=31.13 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCCceEEE
Q 019604 319 LHTCPVCKSPKTVSVHV 335 (338)
Q Consensus 319 l~~CPvCR~~i~~~V~V 335 (338)
-..||+|..+...+..+
T Consensus 153 p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 153 PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCCHHHceec
Confidence 35999999988877654
No 179
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.42 E-value=1.1e+02 Score=26.75 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 019604 131 QQFDIDRLI 139 (338)
Q Consensus 131 Q~~EID~~i 139 (338)
|+.+|+.+.
T Consensus 72 Qq~ql~~I~ 80 (175)
T 3lay_A 72 QQATAQKIY 80 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 180
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=28.89 E-value=12 Score=36.81 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 019604 186 LNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 186 ~n~ELEErlrql~~E~q~Wq~~ 207 (338)
...+|||+.++|+.|...|...
T Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~ 395 (418)
T 2qag_C 374 QHKELEEKRRQFEDEKANWEAQ 395 (418)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888999998888554
No 181
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.82 E-value=3e+02 Score=24.12 Aligned_cols=47 Identities=2% Similarity=0.003 Sum_probs=27.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019604 120 LGNDMSFQIQEQQFDIDRLISQH----------MEKVRMEVEERKKRQVRIIMDVIE 166 (338)
Q Consensus 120 l~~~l~~ql~qQ~~EID~~i~~q----------~ErLR~~L~E~R~rq~r~ll~avE 166 (338)
.-+.|...+.-...+..+|...- ..++=....+.-+.|...+...+.
T Consensus 29 T~~nL~~a~~gE~~a~~~Y~~~A~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~ 85 (202)
T 1yuz_A 29 TLENLKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFEATAAAELIHIGLEYALVA 85 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777887776543 223333344444556555555554
No 182
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=28.79 E-value=28 Score=31.67 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=27.5
Q ss_pred ccccccccccCcceEEeC-CCCcccchhHHhcC------CCCCCCCCCCCc
Q 019604 288 SRLCRNCRKEESCVLLLP-CRHLCLCTVCGSSL------HTCPVCKSPKTV 331 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlP-CrHlclC~~C~~~l------~~CPvCR~~i~~ 331 (338)
...|.+|++--.--+.-| |+|. +=..|.... ..||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 356777777555444433 6655 556677552 499999987654
No 183
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.76 E-value=5e+02 Score=26.74 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 019604 123 DMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQV--RIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIE 200 (338)
Q Consensus 123 ~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~--r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E 200 (338)
.|-.-|.+|..+|...| ++||..|++..|-+. -+++..+-..+.+++..-...-........||+.++.-|..+
T Consensus 50 rLQglLdkqErDltkrI----NELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRI----NKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHH----HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 35556667766666554 677777777732221 122222222233344433322223444445888888887777
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 201 NQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 201 ~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
.+.=...-+.-++.+..++..++++
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6644333344444455555554444
No 184
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.70 E-value=2.5e+02 Score=23.19 Aligned_cols=17 Identities=29% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019604 124 MSFQIQEQQFDIDRLIS 140 (338)
Q Consensus 124 l~~ql~qQ~~EID~~i~ 140 (338)
++..|=..-..||.||.
T Consensus 62 la~dli~k~kqIe~LId 78 (132)
T 1ykh_B 62 LSTDIILKTRQINKLID 78 (132)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444567777774
No 185
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.03 E-value=4.5e+02 Score=25.93 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=36.6
Q ss_pred CccccCCCCCCcccchhhHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019604 106 RSRESCSTPTPFSFLGNDMSF------QIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRI 160 (338)
Q Consensus 106 r~r~~~~~~s~~s~l~~~l~~------ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ 160 (338)
|.++++..+....-+++|+-. +|+.--++.++=|+...++|+..|.+..|-|.-.
T Consensus 26 ~~~s~Ck~~d~~~C~DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~ 86 (390)
T 1deq_A 26 RQQSACKETGWPFCSDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDS 86 (390)
T ss_pred hhccccCCCCCCCCchhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 444554433333333666655 5777777777888888999999999888776543
No 186
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=28.01 E-value=25 Score=24.96 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=5.6
Q ss_pred ccccccccccc
Q 019604 287 GSRLCRNCRKE 297 (338)
Q Consensus 287 ~~~~C~vC~~~ 297 (338)
....|.+|...
T Consensus 35 ~dw~CP~Cg~~ 45 (52)
T 1e8j_A 35 DDWACPVCGAS 45 (52)
T ss_dssp TTCCCSSSCCC
T ss_pred CCCcCCCCCCc
Confidence 34455555543
No 187
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=27.95 E-value=4.5e+02 Score=25.99 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhH-HHHH------H
Q 019604 121 GNDMSFQIQEQQFDIDRLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNW-ALEE------R 193 (338)
Q Consensus 121 ~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~-ELEE------r 193 (338)
+=+|+.-|-+|+..||.=|+.=...|.. | +..-.-+..+|.+|.....++=+.+..-|+-+.++.. .||| -
T Consensus 22 tCgl~d~L~kye~~V~~~l~~L~~~l~~-i-sn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~ 99 (411)
T 3ghg_C 22 TCGIADFLSTYQTKVDKDLQSLEDILHQ-V-ENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEAS 99 (411)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhccchhhHHHHHHHHHHH-H-HhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3467888889999998866543222221 1 2234455667777776655544344333333444433 2222 2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 019604 194 VKSLCIENQIWRDLAQSNEATANALRTNLEQV 225 (338)
Q Consensus 194 lrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~ 225 (338)
+......-+.-+..+.+|.+.+..|+..+.++
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l 131 (411)
T 3ghg_C 100 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233344445555555454444444333
No 188
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=26.95 E-value=30 Score=27.36 Aligned_cols=31 Identities=16% Similarity=0.451 Sum_probs=25.6
Q ss_pred ccccccccccCcceEEeCCC---CcccchhHHhc
Q 019604 288 SRLCRNCRKEESCVLLLPCR---HLCLCTVCGSS 318 (338)
Q Consensus 288 ~~~C~vC~~~~~~vvLlPCr---HlclC~~C~~~ 318 (338)
...|.+|.++--+.-|+-|- |.-+|..|...
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 46899999999998888885 44499999875
No 189
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.67 E-value=75 Score=32.47 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019604 141 QHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANA 217 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~ 217 (338)
+..+||++.-.|-|.|- -+|+.-..+-++.-+++|+ ...||++|++++..|...|+.--..-+-+|.-
T Consensus 300 ~e~qqm~~~a~e~~~~~------~~e~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLAK------QAQREKLQLEIAARERAEK---KQQEYQDRLRQMQEEMERSQANLLEAQDMILR 367 (575)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHTTCCSCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677776655554332 2333322222222222222 33456666666666655555544444444433
No 190
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=26.62 E-value=28 Score=24.74 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=6.3
Q ss_pred CCCCCCCCCCceE
Q 019604 321 TCPVCKSPKTVSV 333 (338)
Q Consensus 321 ~CPvCR~~i~~~V 333 (338)
.||+|...+..+.
T Consensus 37 ~CP~Cg~~K~~F~ 49 (52)
T 1yk4_A 37 VCPLCGAPKSEFE 49 (52)
T ss_dssp BCTTTCCBGGGEE
T ss_pred cCCCCCCCHHHcE
Confidence 3555555444443
No 191
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.58 E-value=2.5e+02 Score=22.61 Aligned_cols=86 Identities=15% Similarity=0.304 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh-------hhHHHH
Q 019604 125 SFQIQEQQFDIDRLI------SQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGK-------LNWALE 191 (338)
Q Consensus 125 ~~ql~qQ~~EID~~i------~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r-------~n~ELE 191 (338)
-.+|..-+..||.+. .++.+.++..+++-|.+.-..+ ..| ...|.+|..++| ...+||
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~--------~~r-~~~E~di~~lrK~lD~~~l~r~dLE 89 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM--------LQR-EEAENTLQSFRQDVDNASLARLDLE 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHH-HHHHHHHHHhhhcccHHHHHHHHHH
Confidence 344444455555443 4566777888877776643222 111 223444443332 345677
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 019604 192 ERVKSLCIENQIWRDLAQSNEATANALRTNL 222 (338)
Q Consensus 192 Erlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~L 222 (338)
.++..|.-|-.-.+.. +|.-+..|++++
T Consensus 90 ~~iesL~eEl~FLKk~---heeEl~eLq~qi 117 (119)
T 3ol1_A 90 RKVESLQEEIAFLKKL---HEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 7777777666554433 455555555443
No 192
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.46 E-value=2.8e+02 Score=25.12 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 019604 137 RLISQHMEKVRMEVEERKKRQVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 137 ~~i~~q~ErLR~~L~E~R~rq~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql 197 (338)
.|++.=+|+=|.+|.+.=+--. .|- .++-.|++||..+...|.+|.+-+.++
T Consensus 97 ~YWk~lAE~RR~AL~eaLeEN~-~Lh--------~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALKENE-KLH--------KEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777666543222 222 234558999999888877777654443
No 193
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.42 E-value=27 Score=25.05 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=7.7
Q ss_pred CCCCCCCCCCceEE
Q 019604 321 TCPVCKSPKTVSVH 334 (338)
Q Consensus 321 ~CPvCR~~i~~~V~ 334 (338)
.||+|...+..+..
T Consensus 38 ~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 38 VCPDCGVGKIDFEM 51 (55)
T ss_dssp CCTTTCCCGGGEEE
T ss_pred cCCCCCCCHHHcee
Confidence 46666655555544
No 194
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.42 E-value=1.8e+02 Score=22.32 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=8.1
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 019604 180 IEKIGKLNWALEERVKSL 197 (338)
Q Consensus 180 iEr~~r~n~ELEErlrql 197 (338)
++...++|..|..+|.+|
T Consensus 68 ~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 68 EDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444443
No 195
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.34 E-value=32 Score=25.16 Aligned_cols=36 Identities=31% Similarity=0.827 Sum_probs=23.1
Q ss_pred ccccccccCcceEEe---CCCCcccchhHHhc----CCCCCCCC
Q 019604 290 LCRNCRKEESCVLLL---PCRHLCLCTVCGSS----LHTCPVCK 326 (338)
Q Consensus 290 ~C~vC~~~~~~vvLl---PCrHlclC~~C~~~----l~~CPvCR 326 (338)
.|..|.....+.-.. -|++. +|.+|... +..||.|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCCC
Confidence 477776655332211 24444 99999987 48999983
No 196
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.28 E-value=73 Score=30.03 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019604 167 EGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQI 203 (338)
Q Consensus 167 ~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~ 203 (338)
....++...++.|++.+...+.+|++.+.+|+.+...
T Consensus 174 ~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 174 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444556789999999999999999999776543
No 197
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.15 E-value=24 Score=25.37 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=5.3
Q ss_pred ccccccccccc
Q 019604 287 GSRLCRNCRKE 297 (338)
Q Consensus 287 ~~~~C~vC~~~ 297 (338)
....|.+|...
T Consensus 35 ~dw~CP~Cg~~ 45 (54)
T 4rxn_A 35 DDWVCPLCGVG 45 (54)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCcCCCCc
Confidence 34455555543
No 198
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.02 E-value=1.1e+02 Score=22.82 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=8.5
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 019604 177 EDEIEKIGKLNWALEERVK 195 (338)
Q Consensus 177 E~EiEr~~r~n~ELEErlr 195 (338)
+.|++.+.+.|.+|+.+|.
T Consensus 60 ~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 60 QQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 199
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.92 E-value=1.1e+02 Score=27.60 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019604 133 FDIDRLISQHMEKVRMEVEERKKRQVR 159 (338)
Q Consensus 133 ~EID~~i~~q~ErLR~~L~E~R~rq~r 159 (338)
.|++.+ ..+.+.|...+++.+.+..|
T Consensus 59 ~e~~~l-~~~l~~l~~e~~el~d~~lR 84 (213)
T 4ani_A 59 EELAAA-KAQIAELEAKLSEMEHRYLR 84 (213)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 566654 55677777777777766554
No 200
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=25.74 E-value=2.6e+02 Score=22.36 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=9.3
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 019604 180 IEKIGKLNWALEERVKSLCI 199 (338)
Q Consensus 180 iEr~~r~n~ELEErlrql~~ 199 (338)
.|++.| .+||.|+.+.+.
T Consensus 64 ~EklAk--ldLE~RLsKtEK 81 (101)
T 1d7m_A 64 LEKLAR--MELEARLAKTEK 81 (101)
T ss_dssp HHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHhhhhh
Confidence 444444 356666655544
No 201
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=25.15 E-value=3e+02 Score=23.04 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 184 GKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 184 ~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
+++...+..+|+.|...+. ..+........|...|..++
T Consensus 59 ~~~~~~~~~~lk~l~~~~~----~~r~~k~~~~~L~~~f~~~~ 97 (196)
T 1fio_A 59 TDLQFKLKNEIKSAQRDGI----HDTNKQAQAENSRQRFLKLI 97 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcch----hhhHHHHHHHHHHHHHHHHH
Confidence 3344445555555554321 11223334444555544443
No 202
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.96 E-value=90 Score=23.46 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 019604 165 IEEGVMKKLKAKEDEIEK 182 (338)
Q Consensus 165 vE~~v~~rLReKE~EiEr 182 (338)
+++...+.|+.||+-|..
T Consensus 12 ~~e~~~~~i~~Kde~I~e 29 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKE 29 (67)
T ss_dssp -----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHH
Confidence 334444555556655555
No 203
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.65 E-value=34 Score=26.65 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=13.2
Q ss_pred CCCCCCCCCCceEEE
Q 019604 321 TCPVCKSPKTVSVHV 335 (338)
Q Consensus 321 ~CPvCR~~i~~~V~V 335 (338)
.||+|..++..+..|
T Consensus 62 ~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCTTTCCCGGGEEEE
T ss_pred cCCCCCCCHHHcEEc
Confidence 799999999888776
No 204
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.47 E-value=5.5e+02 Score=25.74 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 019604 157 QVRIIMDVIEEGVMKKLKAKEDEIEKIGKLNWALEERVKSLCIENQIWRDLAQSNEATANALRTNLEQVLASA 229 (338)
Q Consensus 157 q~r~ll~avE~~v~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l~~~ 229 (338)
.+.-.|...+..|-+.|.+.+..++.+..+..+-.+.++.|...-..=+..-..++.+++.....|++.....
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
No 205
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.45 E-value=2.5e+02 Score=27.37 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=8.3
Q ss_pred HHHHHhhHHHHHHHHh
Q 019604 215 ANALRTNLEQVLASAA 230 (338)
Q Consensus 215 a~~Lr~~LeQ~l~~~~ 230 (338)
...+...|+..+....
T Consensus 87 ~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 87 LREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3344456666665543
No 206
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.31 E-value=2.3e+02 Score=21.27 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=22.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhhHHHHH-------HHHHHHHHHH
Q 019604 167 EGVMKKLKAKEDEIEKIGKLNWALEE-------RVKSLCIENQ 202 (338)
Q Consensus 167 ~~v~~rLReKE~EiEr~~r~n~ELEE-------rlrql~~E~q 202 (338)
.++.+|++....|.+.+.-+-..||. +||.++.-.|
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q 47 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQ 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667888888888885555555555 5555544333
No 207
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.90 E-value=58 Score=23.25 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=8.9
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 019604 179 EIEKIGKLNWALEERVKSL 197 (338)
Q Consensus 179 EiEr~~r~n~ELEErlrql 197 (338)
+++.+.+.|.+|+++++.+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555544
No 208
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.34 E-value=43 Score=34.29 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=0.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 019604 185 KLNWALEERVKSLCIENQIWRDLAQSNEATA 215 (338)
Q Consensus 185 r~n~ELEErlrql~~E~q~Wq~~Ak~nEA~a 215 (338)
....+|+|.++.++.|+.--..++..-|.+-
T Consensus 363 ~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~ 393 (575)
T 2i1j_A 363 DMILRLEEQLRQLQAAKEELEQRQNELQAMM 393 (575)
T ss_dssp HC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466666666666665555554444333
No 209
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.28 E-value=99 Score=21.98 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=16.1
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEE 192 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEE 192 (338)
.+++++.|.++-++.|++..||+
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 46677777777777777666664
No 210
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=23.19 E-value=98 Score=27.19 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019604 128 IQEQQFDIDRLISQHMEKVRMEVEERKKRQVRI 160 (338)
Q Consensus 128 l~qQ~~EID~~i~~q~ErLR~~L~E~R~rq~r~ 160 (338)
-.+|+.++++-++.+.|+|.+.++.++.-|-.+
T Consensus 227 ~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~ 259 (261)
T 3sde_A 227 EKQQREQVDRNIREAKEKLEAEMEAARHEHQLM 259 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 344555666666666666666666666665543
No 211
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.76 E-value=2e+02 Score=23.59 Aligned_cols=51 Identities=25% Similarity=0.182 Sum_probs=28.1
Q ss_pred hHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 176 KEDEIEKIGKLNWALEERVKSL----CIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 176 KE~EiEr~~r~n~ELEErlrql----~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
...++++......+|++.+..- ..+.+.-+..++..|+.-..|+...-|+.
T Consensus 18 l~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q 72 (112)
T 1x79_B 18 ANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554333 33445666666677776666665555544
No 212
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.74 E-value=2.9e+02 Score=22.01 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 141 QHMEKVRMEVEERKKRQVRIIMDVIEEGVM---KKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 141 ~q~ErLR~~L~E~R~rq~r~ll~avE~~v~---~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
+++|++-.+.--+.+.....+++.++.-.. +++|+.+.-|+.+-| |-++ |++.++..|+.
T Consensus 13 Le~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk-~l~~-EklAkldLE~R 75 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLK-NLEL-EKLARMELEAR 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccH-HHHHHHHHHHH
Confidence 456677666666667777777777776544 568888888887654 4443 47788888875
No 213
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.55 E-value=4.9e+02 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=12.6
Q ss_pred HHHHHHHhHHH--HHHHHHHHHHHHH
Q 019604 135 IDRLISQHMEK--VRMEVEERKKRQV 158 (338)
Q Consensus 135 ID~~i~~q~Er--LR~~L~E~R~rq~ 158 (338)
+|.++.+..++ +...+++.|.++.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN 61 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLIN 61 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888776542 3334444444333
No 214
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.53 E-value=1.5e+02 Score=28.98 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=9.1
Q ss_pred HHHHHhhHHHHHHHHhH
Q 019604 215 ANALRTNLEQVLASAAA 231 (338)
Q Consensus 215 a~~Lr~~LeQ~l~~~~~ 231 (338)
...+...|+..+...++
T Consensus 91 ~~~~~~~~~~~~~~ipN 107 (425)
T 2dq3_A 91 LRKVEEELKNTLLWIPN 107 (425)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34444566666665543
No 215
>3vea_B MATP, macrodomain TER protein; macrodomains, chromosome, DNA condensation; 2.55A {Yersinia pestis} PDB: 3veb_B 4d8j_B
Probab=22.51 E-value=17 Score=31.38 Aligned_cols=90 Identities=16% Similarity=0.280 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 019604 127 QIQEQQFDIDRLISQH-----MEKVRMEVEERKKRQVRIIMD-------VIEEGVMKKLKAKEDEIEKIGKLNWALEERV 194 (338)
Q Consensus 127 ql~qQ~~EID~~i~~q-----~ErLR~~L~E~R~rq~r~ll~-------avE~~v~~rLReKE~EiEr~~r~n~ELEErl 194 (338)
.++.+=.+|-..|..| .-+|+..|+.+|+||.-+==- -+|-.|=.||-.. +.++..-|-|-+
T Consensus 46 ~le~~P~~v~~WI~~hm~~~l~nklkQaIRArRKRhFNAE~qhTrKKSIDLey~vW~rLs~~------a~~~~~TLSetI 119 (151)
T 3vea_B 46 KLENEPVKVQEWIDAHMNVNLATRMKQTIRARRKRHFNAEHQHTRKKSIDLEFLVWQRLAVL------ARRRGNTLSDTV 119 (151)
T ss_dssp TCTTCHHHHHHHHHHHBCHHHHHHHHHHHHHHHHHHHHTTSGGGCEEEEEEEHHHHHHHHHH------HHHHTCCHHHHH
T ss_pred HhccChHHHHHHHHHhcCHHHHHHHHHHHHHHHHccCCccccccccCcccchHHHHHHHHHH------HHHcCCcHHHHH
Confidence 4566667777777766 578999999999999831000 0123344444332 234444566666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 019604 195 KSLCIENQIWRDLAQSNEATANALRTNLEQVL 226 (338)
Q Consensus 195 rql~~E~q~Wq~~Ak~nEA~a~~Lr~~LeQ~l 226 (338)
.+|--|+..= +++ +..+.+|+..|..+|
T Consensus 120 ~~li~eae~k---e~y-~~q~s~lK~dL~~lL 147 (151)
T 3vea_B 120 VQLIEDAERK---EKY-ASQMSSLKQDLKDIL 147 (151)
T ss_dssp HHHHHHHHHH---HHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHH-HHHHHHHHHHHHHHh
Confidence 6666555432 222 233456666666665
No 216
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.38 E-value=1.2e+02 Score=28.29 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=27.2
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019604 170 MKKLKAKEDEIEKIGKLNWALEERVKSLCIENQ 202 (338)
Q Consensus 170 ~~rLReKE~EiEr~~r~n~ELEErlrql~~E~q 202 (338)
..|+++++.+++.+..+|..|.+.++.+..|..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~ 85 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLL 85 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999889888888877643
No 217
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.09 E-value=33 Score=23.87 Aligned_cols=13 Identities=38% Similarity=0.762 Sum_probs=8.9
Q ss_pred CCCCCCCCCCceE
Q 019604 321 TCPVCKSPKTVSV 333 (338)
Q Consensus 321 ~CPvCR~~i~~~V 333 (338)
.||+|...+..+.
T Consensus 32 ~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 32 CCPVCGVSKDQFS 44 (46)
T ss_dssp BCTTTCCBGGGEE
T ss_pred cCcCCCCcHHHcE
Confidence 6777777766554
No 218
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.67 E-value=1.7e+02 Score=22.76 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHH
Q 019604 186 LNWALEERVKSLCIE 200 (338)
Q Consensus 186 ~n~ELEErlrql~~E 200 (338)
+|.+|+..++++..+
T Consensus 53 rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 53 RNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 219
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.66 E-value=23 Score=31.02 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCceEE
Q 019604 320 HTCPVCKSPKTVSVH 334 (338)
Q Consensus 320 ~~CPvCR~~i~~~V~ 334 (338)
..||+|..++..+..
T Consensus 172 ~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 172 ELCPACAHPKAHFEL 186 (191)
T ss_dssp SBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCHHHHHh
Confidence 489999998877654
No 220
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.24 E-value=34 Score=25.76 Aligned_cols=15 Identities=40% Similarity=0.959 Sum_probs=9.8
Q ss_pred CCCCCCCCCCceEEE
Q 019604 321 TCPVCKSPKTVSVHV 335 (338)
Q Consensus 321 ~CPvCR~~i~~~V~V 335 (338)
.||+|..++..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 577777776666554
No 221
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.94 E-value=3e+02 Score=26.90 Aligned_cols=34 Identities=9% Similarity=-0.085 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019604 171 KKLKAKEDEIEKIGKLNWALEERVKSLCIENQIW 204 (338)
Q Consensus 171 ~rLReKE~EiEr~~r~n~ELEErlrql~~E~q~W 204 (338)
+++.+.+.+++++...+.++++++.+...+...+
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l 50 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 50 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666777776666555544
No 222
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.82 E-value=2.9e+02 Score=21.23 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=17.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019604 180 IEKIGKLNWALEERVKSLCIENQIWR 205 (338)
Q Consensus 180 iEr~~r~n~ELEErlrql~~E~q~Wq 205 (338)
++.+..+|.+||++|+.+...-+.-+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344567789999888887666543
No 223
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.81 E-value=3e+02 Score=21.46 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 019604 189 ALEERVKSLCIENQ 202 (338)
Q Consensus 189 ELEErlrql~~E~q 202 (338)
|.++-|+|+..|.+
T Consensus 49 EA~ell~qMelE~r 62 (102)
T 1vcs_A 49 EARELLEQMDLEVR 62 (102)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666666655
No 224
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.38 E-value=2.3e+02 Score=23.28 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019604 121 GNDMSFQIQEQQFDIDRLISQHMEKVRMEVEE 152 (338)
Q Consensus 121 ~~~l~~ql~qQ~~EID~~i~~q~ErLR~~L~E 152 (338)
-++|+++|++ |++++-.||+-|..
T Consensus 10 ~EeLaaeL~k--------LqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVER--------LKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHTC--
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 4568888866 45667778887763
No 225
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.33 E-value=22 Score=35.28 Aligned_cols=22 Identities=27% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 019604 186 LNWALEERVKSLCIENQIWRDL 207 (338)
Q Consensus 186 ~n~ELEErlrql~~E~q~Wq~~ 207 (338)
...+||++.++|+.|-..|...
T Consensus 378 ~~~~le~~~~~~~~~~~~~~~~ 399 (427)
T 2qag_B 378 EKKKLEDKKKSLDDEVNAFKQR 399 (427)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888665
No 226
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=20.11 E-value=9.4 Score=28.84 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019604 188 WALEERVKSLCIENQIWR 205 (338)
Q Consensus 188 ~ELEErlrql~~E~q~Wq 205 (338)
..||..+.||+.|-|+|-
T Consensus 16 qalekelaqlekelqawn 33 (80)
T 2lq4_p 16 QALEKELAQLEKELQAWN 33 (80)
T ss_dssp HHHHTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 447778889999999994
Done!