Query 019605
Match_columns 338
No_of_seqs 204 out of 1749
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02505 omega-6 fatty acid de 100.0 4.1E-70 8.9E-75 519.0 31.3 336 1-338 1-381 (381)
2 PLN02498 omega-3 fatty acid de 100.0 1.3E-61 2.7E-66 463.4 28.9 299 22-337 93-440 (450)
3 PLN02598 omega-6 fatty acid de 100.0 2.7E-53 5.8E-58 408.6 28.0 285 25-323 71-393 (421)
4 cd03507 Delta12-FADS-like The 100.0 3.2E-41 7E-46 302.0 17.9 220 47-284 1-222 (222)
5 COG3239 DesA Fatty acid desatu 100.0 3.4E-38 7.4E-43 298.9 22.9 261 30-298 15-299 (343)
6 PLN03198 delta6-acyl-lipid des 100.0 5.9E-38 1.3E-42 310.6 21.4 281 32-323 188-517 (526)
7 cd03506 Delta6-FADS-like The D 100.0 4.5E-38 9.8E-43 278.7 14.3 197 88-298 2-202 (204)
8 PLN03199 delta6-acyl-lipid des 100.0 9E-37 2E-41 301.5 21.0 280 32-320 113-470 (485)
9 cd03511 Rhizopine-oxygenase-li 100.0 7.1E-35 1.5E-39 271.1 23.7 238 44-298 9-276 (285)
10 cd03513 CrtW_beta-carotene-ket 100.0 1.1E-33 2.3E-38 252.1 18.1 191 82-287 28-224 (225)
11 cd03514 CrtR_beta-carotene-hyd 100.0 5.9E-33 1.3E-37 246.0 17.2 180 84-297 22-204 (207)
12 KOG4232 Delta 6-fatty acid des 100.0 4.6E-31 9.9E-36 246.7 20.6 276 31-319 99-418 (430)
13 cd03508 Delta4-sphingolipid-FA 100.0 5.8E-31 1.3E-35 243.3 20.2 240 43-313 10-274 (289)
14 cd03510 Rhizobitoxine-FADS-lik 100.0 3E-31 6.4E-36 229.0 12.8 154 82-291 17-175 (175)
15 PLN02579 sphingolipid delta-4 100.0 3.2E-30 6.9E-35 241.3 18.4 220 82-314 69-303 (323)
16 PF00487 FA_desaturase: Fatty 100.0 2.6E-30 5.6E-35 233.4 12.1 213 83-298 3-249 (257)
17 cd03509 DesA_FADS-like Fatty a 100.0 4.7E-28 1E-32 224.4 22.3 196 88-297 29-259 (288)
18 KOG2987 Fatty acid desaturase 99.9 9.5E-21 2.1E-25 165.8 15.2 253 27-313 16-300 (324)
19 cd01060 Membrane-FADS-like The 99.8 2.9E-19 6.2E-24 144.9 6.9 60 99-158 14-73 (122)
20 cd03512 Alkane-hydroxylase Alk 99.8 9.3E-18 2E-22 157.5 17.3 224 81-317 67-312 (314)
21 COG1398 OLE1 Fatty-acid desatu 98.7 5E-07 1.1E-11 81.2 14.5 51 104-155 66-117 (289)
22 PF11960 DUF3474: Domain of un 98.6 4.4E-08 9.5E-13 78.7 5.3 49 19-67 87-135 (136)
23 PLN02220 delta-9 acyl-lipid de 98.4 2.3E-05 5E-10 72.9 16.5 48 107-155 80-127 (299)
24 KOG1600 Fatty acid desaturase 97.8 0.0002 4.4E-09 65.9 11.4 49 107-156 91-139 (321)
25 cd03505 Delta9-FADS-like The D 97.6 0.00083 1.8E-08 57.9 10.3 48 107-155 27-74 (178)
26 PF13829 DUF4191: Domain of un 34.5 1.3E+02 0.0029 26.9 6.3 59 32-98 9-67 (224)
27 cd03509 DesA_FADS-like Fatty a 33.0 3.1E+02 0.0068 25.4 9.0 15 139-153 230-244 (288)
28 PLN02505 omega-6 fatty acid de 26.0 2.9E+02 0.0063 26.9 7.6 38 90-127 259-296 (381)
29 PLN02579 sphingolipid delta-4 21.2 5.1E+02 0.011 24.6 8.1 65 85-149 77-141 (323)
No 1
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=4.1e-70 Score=519.00 Aligned_cols=336 Identities=81% Similarity=1.446 Sum_probs=292.4
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHhCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc
Q 019605 1 MGAGGRMAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHP 80 (338)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 80 (338)
||+||||.||....+-....+++.+.++|++|++|+|+++|++||++|+.|++.+++.|+++++++++++..++..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~ 80 (381)
T PLN02505 1 MGAGGRMSVPTSSKKGSASAVKRVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGP 80 (381)
T ss_pred CCCCCcCCCCccccCccccccccCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 89999999974333222333477888999999999999999999999999999999999999988776665454445555
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcccccc
Q 019605 81 LSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPK 160 (338)
Q Consensus 81 ~~~~~~~l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~ 160 (338)
+.+.+|+++++++|+.+.++++++|||+|+++|+++++|+++|.+++.+++.|+..||..|+.||++||+.++||++.|.
T Consensus 81 ~~~~l~~~~~~~~G~~~~~l~vl~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~ 160 (381)
T PLN02505 81 LSYVAWPLYWAAQGCVLTGVWVIAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPK 160 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCc
Confidence 66778889999999999999999999999999999999999999999898999999999999999999999999999988
Q ss_pred hhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhhh-----------------------------------------
Q 019605 161 QKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVS----------------------------------------- 199 (338)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~----------------------------------------- 199 (338)
++++.++..++.++|++++..++.+..+|||+|++.++.
T Consensus 161 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~ 240 (381)
T PLN02505 161 KKSALPWYSKYLNNPPGRLLHIVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLY 240 (381)
T ss_pred CHHHHhHHHHHhcChHHHHHHHHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665555666778776665555566777766653110
Q ss_pred ----hhhhHHHHHHhhhhhHhHhHHHHHHHhccCCCCCCcccCCCCccHHhhhhhccccCccchhhhhcCCCcchhhhhh
Q 019605 200 ----AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHL 275 (338)
Q Consensus 200 ----~~g~~~~l~~~~~P~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~~l~T~~~~~~~l~~l~~nl~nyH~eHHl 275 (338)
..|++.++.+|++|+++++.|+.++||+||++|++|++++++|++.++|+.|+|+++++++++++|++++|+.||+
T Consensus 241 ~~~~~~G~~~~l~~y~vP~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~tvdr~yg~~~~l~h~I~~~Hv~HHl 320 (381)
T PLN02505 241 RLAAAKGLAWVLCVYGVPLLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHL 320 (381)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCCCcChhhccceeccCcchHHHHHHccCCcccchhhc
Confidence 1355667889999999999999999999999999999999999999999999999999999999999559999999
Q ss_pred cCCCCcccHHHHHHHHHHhhhcccccCCccHHHHHHHhhcccEEecCCCCCCCccEEEeecCC
Q 019605 276 FSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 338 (338)
Q Consensus 276 fP~IP~~~Lp~~~~~l~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (338)
+|+||+|||++|++.+|+.++++|++++.++++++|+.+|+|+.+|+|+++ +||++|+||.
T Consensus 321 ~srIP~Y~l~eA~~aik~~lg~~y~~~~~~~~~~l~~~~~~C~~v~~~~~~--~~v~~~~~~~ 381 (381)
T PLN02505 321 FSTMPHYHAMEATKAIKPILGEYYQFDGTPVYKALWREAKECIYVEPDEGG--KGVFWYNNKF 381 (381)
T ss_pred cCCCCCCCHHHHHHHHHHHhHHHhcCCCCcHHHHHHHHhcceEEeCcCCCC--CceEEEecCC
Confidence 999999999999999999999999998889999999999999999988663 8999999984
No 2
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=1.3e-61 Score=463.39 Aligned_cols=299 Identities=37% Similarity=0.740 Sum_probs=252.6
Q ss_pred CCCCCCCCCCCHHHHHHhCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHHhhh
Q 019605 22 KRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVW 101 (338)
Q Consensus 22 ~~~~~~~~~~~~~~lr~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~ 101 (338)
++++.++|++|++|+|++||++||++|++|++.++++|+++++++++++. +. .+|++|+++++++|+.+.+++
T Consensus 93 ~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~-~~------~~w~~wpl~w~~~G~~~~gL~ 165 (450)
T PLN02498 93 EFDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAA-YF------NNWVVWPLYWFAQGTMFWALF 165 (450)
T ss_pred ccCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHH-HH------hHHHHHHHHHHHHHHHHHHHH
Confidence 36677889999999999999999999999999999999999887766553 22 257889999999999999999
Q ss_pred hhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcccccchhhhhhHHHHHhhchHHHHHH
Q 019605 102 VVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVIT 181 (338)
Q Consensus 102 ~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~ 181 (338)
+++|||+|+++|+++++|+++|.+++.+++.|+..||..|+.||++||+.++||++.|.++++++..... .++.+..
T Consensus 166 vl~HDcgHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y~~l~~~--~~~~~~~- 242 (450)
T PLN02498 166 VLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKSLDKV--TRTLRFT- 242 (450)
T ss_pred HHHHhccccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHhcccc--chHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999998877553211000 0000000
Q ss_pred HHHHHHHHHHHHHHhhh-----------------------------------------hhhhhHHHHHHhhhhhHhHhHH
Q 019605 182 LTVTLTLGWPLYLAFNV-----------------------------------------SAKGLVYVFCIYGGPLLVVNGF 220 (338)
Q Consensus 182 ~~~~~~~~w~~~l~~~~-----------------------------------------~~~g~~~~l~~~~~P~~~~~~~ 220 (338)
.....+|||.|++.++ ...|++.++.+|++|+++++.|
T Consensus 243 -~~~~~~g~p~YL~~~~~g~~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~~Y~vP~lv~~~W 321 (450)
T PLN02498 243 -LPFPMLAYPFYLWSRSPGKKGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLKLYGIPYWIFVMW 321 (450)
T ss_pred -HHHHHHHHHHHHhhhccCCcCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 0011223333322211 1357777889999999999999
Q ss_pred HHHHHhccCC--CCCCcccCCCCccHHhhhhhccccCccchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcc
Q 019605 221 LVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEY 298 (338)
Q Consensus 221 l~~~~~~~H~--~~~~~~~~~~~~~~~~~~l~T~~~~~~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~ 298 (338)
+.++||+||+ .+++|++++++|+++++|+.|+||+|+|++++++|+ ++|+.||+||+||+|||+||++.+|+.+++|
T Consensus 322 L~~iTyLhHt~~~~~iP~y~~~eWs~~rGaL~TvDR~yg~i~~l~H~I-~tHV~HHlf~~IPhYhl~eAt~aiK~~lg~y 400 (450)
T PLN02498 322 LDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKY 400 (450)
T ss_pred HHHhhhhcccCCCCCCCCCCCCCcchhhccceeecCcccchhhhhcCc-ccchhhhccCCCCCcCHHHHHHHHHHHhHHh
Confidence 9999999998 678999999999999999999999999999999999 6999999999999999999999999999999
Q ss_pred cccCCcc------HHHHHHHhhcccEEecCCCCCCCccEEEeecC
Q 019605 299 YQFDGTP------FYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 337 (338)
Q Consensus 299 ~~~~~~~------~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (338)
|++...+ +++++|+.+|+|+.||+| +||++|++.
T Consensus 401 y~e~~~~~~~p~~~~~~l~r~~~~c~~v~~~-----~~v~~y~~~ 440 (450)
T PLN02498 401 YREPKKSGPLPFHLLGSLIRSMKQDHYVSDT-----GDVVYYQTD 440 (450)
T ss_pred eecCCCCCCchhHHHHHHHHHhcceEEEeCC-----CCEEEEecc
Confidence 9998875 899999999999999966 689999874
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=2.7e-53 Score=408.63 Aligned_cols=285 Identities=26% Similarity=0.438 Sum_probs=232.2
Q ss_pred CCCCC-CCCHHHHHHhCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 019605 25 PCSKP-PFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVV 103 (338)
Q Consensus 25 ~~~~~-~~~~~~lr~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 103 (338)
|+++| ++|++|+|++||++||++|+.|++.+++.+++++++++++.. . .+|++++++++++|+.+.+++++
T Consensus 71 ~~~~~~~~tl~~i~~aiP~~~F~~s~~rs~~~l~~~i~~~~~~~~~~~-~-------~~w~~~~l~~~~~G~~~~~l~vl 142 (421)
T PLN02598 71 GEPLPDNVTLKDVVKTLPKEVFEIDDFKAWKTVAITVTSYALGLAAIA-V-------APWYLLPLAWAWLGTAITGFFVI 142 (421)
T ss_pred CCcCCCCcCHHHHHHhCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-H-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 689999999999999999999999999998888754443221 1 24677888899999999999999
Q ss_pred hcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcccccchhhhhh-------HHHHHhhchH
Q 019605 104 AHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIG-------WYAKYLNNPL 176 (338)
Q Consensus 104 ~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~-------~~~~~~~~~~ 176 (338)
+|||+|+++++++++|+++|.+++.+++.|+..||..|+.||++||+.++|||+.|.++++++ +.+++...|+
T Consensus 143 ~Hec~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~e~~~~~~~~r~l~~~~~GP~ 222 (421)
T PLN02598 143 GHDCGHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFDNADPLRKAMMRAGMGPL 222 (421)
T ss_pred HHhccccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCCCcCCcCHHHHhhcCHHHHHHHHHhHhHH
Confidence 999999999999999999999999998999999999999999999999999999887664421 1111111121
Q ss_pred HHH-------------------------HHHH---HHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHhHhHHHHHHHhcc
Q 019605 177 GRV-------------------------ITLT---VTLTLGWPLYLAFNVSAKGLVYVFCIYGGPLLVVNGFLVLITLLQ 228 (338)
Q Consensus 177 ~~~-------------------------~~~~---~~~~~~w~~~l~~~~~~~g~~~~l~~~~~P~~~~~~~l~~~~~~~ 228 (338)
+-+ +... ....++++.+.. ..|.+.++.+|++|+++.++|++++++++
T Consensus 223 yl~~~~~~~~~~hf~~~~f~~~er~~v~~S~~~v~~~~~~~l~~~~~----~~G~~~~~~~ylvP~Lv~~~wl~~it~lh 298 (421)
T PLN02598 223 WWWASIGHWLFWHFDLNKFRPQEVPRVKISLAAVFAFMALGLPPLLY----TTGPVGFVKWWLMPWLGYHFWMSTFTMVH 298 (421)
T ss_pred HHHHhhhcceeeccCcccCChhhhHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0000 001122222221 35777788899999999999999999999
Q ss_pred CCCCCCcccCCCCccHHhhhhh-ccccCcc-chhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcccccCCccH
Q 019605 229 HTHPSLPHYHSSEWDWFRGALA-TVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPF 306 (338)
Q Consensus 229 H~~~~~~~~~~~~~~~~~~~l~-T~~~~~~-~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~~~~~~~~~ 306 (338)
|+.+++|++++++|++.++++. |++++++ |++++++|+ |||++||+||+||+||||++++.+|+.++++|++. ...
T Consensus 299 Ht~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnI-n~HV~HHLfP~IP~Y~lpea~~alk~~~g~~y~~~-~~~ 376 (421)
T PLN02598 299 HTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDI-SVHIPHHISSKIPSYNLRKAHASLQENWGKHLNKA-TFN 376 (421)
T ss_pred hcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCC-ccchhhhcCCCCCcchHHHHHHHHHHHhccccccC-chh
Confidence 9999999998899999999997 7888875 789999999 89999999999999999999999999999998886 356
Q ss_pred HHHHHHhhcccEEecCC
Q 019605 307 YKAMWREAKECLYVEPD 323 (338)
Q Consensus 307 ~~al~~~~~~~~~~~~~ 323 (338)
++++++..++|++||+|
T Consensus 377 ~~~l~~~~~~C~~~d~~ 393 (421)
T PLN02598 377 WRLMKTILTQCHVYDKE 393 (421)
T ss_pred HHHHHHHhhheEEEcCC
Confidence 89999999999999966
No 4
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=3.2e-41 Score=302.01 Aligned_cols=220 Identities=50% Similarity=0.881 Sum_probs=178.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHH
Q 019605 47 RSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLIL 126 (338)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~ 126 (338)
++..+++.+++.|++++++++.++.. ..+|++++++++++|+.+.++++++|||+|++++|+|++|+++|.++
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~ 73 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASL-------LLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHIL 73 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHH
Confidence 46788999999999998876654421 12577888999999999999999999999999999999999999999
Q ss_pred HhhccCchHHhHHhhcccccCCCCCCCCcccccchhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 019605 127 HSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSAKGLVYV 206 (338)
Q Consensus 127 ~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~g~~~~ 206 (338)
+.+++.|+..||..|+.||++||+.++|+|+.|..+.+....... .+.......+....+||+.++..+ +
T Consensus 74 ~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~~~~~~~--~~y~~~~~~~~~~~~g~~~~~~~~--------~ 143 (222)
T cd03507 74 HSPLLVPYHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAELPKR--LPYRLYRNPFLMLSLGWPYYLLLN--------V 143 (222)
T ss_pred HHHHhCChHHHHHHHHHHHhccCCCCCCCcccCcCHHHhhccccc--chHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 999999999999999999999999999999988776542111100 011111122223356677666532 6
Q ss_pred HHHhhhhhHhHhHHHHHHHhccCCCCCCcccCCCCccHHhhhhh-ccccCc-cchhhhhcCCCcchhhhhhcCCCCcccH
Q 019605 207 FCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALA-TVDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHA 284 (338)
Q Consensus 207 l~~~~~P~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~~l~-T~~~~~-~~l~~l~~nl~nyH~eHHlfP~IP~~~L 284 (338)
+.+|++|.++.+.++.++++++|+.+++|++++++|+|.+.|+. |+|+++ +|++++++|+ |||+|||+||+||+|||
T Consensus 144 ~~~~~ip~l~~~~~l~~~t~l~H~~~~~~~~~~~~w~~~~~q~~~t~~~~~~~~~~~l~~~i-~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 144 LLYYLIPYLVVNAWLVLITYLQHTFPDIPWYRADEWNFAQAGLLGTVDRDYGGWLNWLTHII-GTHVAHHLFPRIPHYNL 222 (222)
T ss_pred HHHHHhHHHHHHHHHHeeeEecCCCCCCCCcCccccchhhhcceeeeeccccHHHHHHhcCC-CcccchhcCCCCCcCcC
Confidence 77899999999999999999999999999998899999888876 567777 4889999999 89999999999999985
No 5
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=3.4e-38 Score=298.94 Aligned_cols=261 Identities=26% Similarity=0.430 Sum_probs=185.3
Q ss_pred CCCHHHHHHhCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 019605 30 PFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGH 109 (338)
Q Consensus 30 ~~~~~~lr~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hd~~H 109 (338)
..+++.+++++|+++++++..+.+..++...++++++.. ...+. .+|+..++++++.|+++.+++.++|||+|
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~w~~~~l~~~~~~~~l~~~~~v~Hd~~H 87 (343)
T COG3239 15 AAPLDSIRARLPKPRTRRDAIAILITFLALAGLWALLAL-SLAYW------PSWWLLPLALLLAGLLLTGLFSVGHDCGH 87 (343)
T ss_pred ccchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHH-HHHhh------hhHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 347899999999998888877766555554444443332 22221 13778888899999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcccc-cchh--hhhhHHHHHhhchH--------HH
Q 019605 110 HAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFV-PKQK--TAIGWYAKYLNNPL--------GR 178 (338)
Q Consensus 110 ~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~-p~~~--~~~~~~~~~~~~~~--------~~ 178 (338)
|+++|++|+||++|.+++.+.+.|+..||..|++||++||+.|+|||.. .... ....+....++.+. +.
T Consensus 88 gs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 167 (343)
T COG3239 88 GSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPETYVSYPEQLRRGPLRFQLIRLPWLAFGFGPRWA 167 (343)
T ss_pred cchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHHHHHhCchhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999988999999999999999999999997742 1111 10011111111111 00
Q ss_pred HHHHHHH----------HHHHHHHHHHhhhhhhhhHHHHHHh-hhhhHhHhHHHHHHHhccCCCCCCcccCCCCccHHhh
Q 019605 179 VITLTVT----------LTLGWPLYLAFNVSAKGLVYVFCIY-GGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRG 247 (338)
Q Consensus 179 ~~~~~~~----------~~~~w~~~l~~~~~~~g~~~~l~~~-~~P~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~ 247 (338)
+..+... ....+.......+.+.++.....+| ++|.++.+.|...+++++|..+..++...++|++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~p~l~~~~~~~~~~~~~h~~~~~~~~~~~d~~~~~~ 247 (343)
T COG3239 168 LLHFELLEKLFKRSGKAPKAAALATLLAAIGLAALLALAFFWGLIPLLLVGLWLVLVLFVHHTFDLLPHHGLEDWQWSDR 247 (343)
T ss_pred hhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhcccccccccccccchHHHH
Confidence 0000000 0000000000000011233344456 6899999999999999999988888877788888888
Q ss_pred hhh-ccccCcc-chhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcc
Q 019605 248 ALA-TVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEY 298 (338)
Q Consensus 248 ~l~-T~~~~~~-~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~ 298 (338)
++. |++.+++ +++++++|+ |||+|||+||+||+||||++++.+|+.+++.
T Consensus 248 ~l~~~~~~~~~~~~~~l~~n~-nyH~~HHl~P~vP~y~lp~~~~~~~~~~~~~ 299 (343)
T COG3239 248 ALNARSNVDAPPLLRFLTGNI-NYHVEHHLFPDVPWYRLPRAHRLIKEALGER 299 (343)
T ss_pred HHhccCccCchHHHHHhcCCc-cccHhhhCCCCCchhhHHHHHHHHHHHcCcC
Confidence 887 4455555 789999999 8999999999999999999999999999754
No 6
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=5.9e-38 Score=310.60 Aligned_cols=281 Identities=14% Similarity=0.121 Sum_probs=193.2
Q ss_pred CHHHHHHhCC-CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 019605 32 TLSQVKKAIP-PHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHH 110 (338)
Q Consensus 32 ~~~~lr~~l~-~~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hd~~H~ 110 (338)
.++++|+++. +++|++++.+....++..++++++++++.+ . .. +++..+++++++|+.+.++++++|||+|+
T Consensus 188 dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~-~---~~---~~~~~ll~a~llgl~~~q~g~l~HD~~H~ 260 (526)
T PLN03198 188 DFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIIC-C---SK---SISAVLASACMMALCFQQCGWLSHDFLHN 260 (526)
T ss_pred hHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHH-H---Hc---cHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6999999975 578999987766666655555554443321 1 11 23345667888999999999999999999
Q ss_pred cccCCchhhHHHHHHHHhh-ccCchHHhHHhhcccccCCCCCC-----CCcccccch-----hhh-----hhHHHHH--h
Q 019605 111 AFSDYQWLDDTVGLILHSC-LLVPYFSWKYSHRRHHSNTGSLD-----RDEVFVPKQ-----KTA-----IGWYAKY--L 172 (338)
Q Consensus 111 s~~~~~~~N~~~G~l~~~~-~~~p~~~wr~~H~~HH~~tn~~~-----~Dpd~~p~~-----~~~-----~~~~~~~--~ 172 (338)
++++++++|+++|.+++.+ ++.|+.+||..||.||.+||..+ +|||+...+ +.. -+.+.++ +
T Consensus 261 s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~~~~~~~~~~~~~~~~~~~~~y 340 (526)
T PLN03198 261 QVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLIAWSKDILATVENKTFLRILQY 340 (526)
T ss_pred cccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCccceeEechhhhhcchhhhHHHHHhh
Confidence 9999999999999987654 67999999999999999999987 799973211 100 0000110 1
Q ss_pred hchHH----HHHHHH--HH---------------------HHHHHHHHHHhhhhhhhhHHHHHHhhhhhHhHhHHHHHHH
Q 019605 173 NNPLG----RVITLT--VT---------------------LTLGWPLYLAFNVSAKGLVYVFCIYGGPLLVVNGFLVLIT 225 (338)
Q Consensus 173 ~~~~~----~~~~~~--~~---------------------~~~~w~~~l~~~~~~~g~~~~l~~~~~P~~~~~~~l~~~~ 225 (338)
+++.. .+..+. +. ..+.+..++.....+++.+..++++++..++.+.++.+++
T Consensus 341 Qh~~f~~ll~l~~~~~~~~s~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~l~~~~~~~~l~~~~l~~~~~g~~l~~vF 420 (526)
T PLN03198 341 QHLFFMALLFFARGSWLFWSWRYTSTAKLAPADRLLEKGTILFHYFWFIGTACYLLPGWKPLVWMAVTELMCGMLLGFVF 420 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 22110 000000 00 0000000000000012223334556667777788888899
Q ss_pred hccCCCCCCcccCCCCccHHhhhhhc-cccCc-cchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcc-cccC
Q 019605 226 LLQHTHPSLPHYHSSEWDWFRGALAT-VDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEY-YQFD 302 (338)
Q Consensus 226 ~~~H~~~~~~~~~~~~~~~~~~~l~T-~~~~~-~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~-~~~~ 302 (338)
+++|+.+++.. .+ .||.+.|+.| .|.+. .|++|++||+ |||+||||||+||++|||++++++++.|+|+ +.|+
T Consensus 421 ~lnH~~~~v~~--~~-~dw~~~Qv~tT~n~~~~~~~~wf~GGL-N~QiEHHLFP~iP~~~l~~i~piVk~~C~k~GlpY~ 496 (526)
T PLN03198 421 VLSHNGMEVYN--KS-KEFVNAQIVSTRDIKANIFNDWFTGGL-NRQIEHHLFPTMPRHNLNKIAPQVEAFCIKHGLVYE 496 (526)
T ss_pred hccccCCCCCC--CC-cCHHHHHHhcCcCcCCchHHHHhhcCC-cccchhhcCCCCchhhHHHHhHHHHHHHHHcCCCCC
Confidence 99999877642 22 3899999986 45544 4889999999 9999999999999999999999999999999 7777
Q ss_pred CccHHHHHHHhhcccEEecCC
Q 019605 303 GTPFYKAMWREAKECLYVEPD 323 (338)
Q Consensus 303 ~~~~~~al~~~~~~~~~~~~~ 323 (338)
..++++++.++++..+-+...
T Consensus 497 ~~~~~~a~~~~l~~L~~vg~~ 517 (526)
T PLN03198 497 DVSIAAGTCKVLKALKEVAEA 517 (526)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 778999998888766555443
No 7
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=4.5e-38 Score=278.70 Aligned_cols=197 Identities=20% Similarity=0.251 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcccccchhhhhhH
Q 019605 88 VYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGW 167 (338)
Q Consensus 88 l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~ 167 (338)
++++++|+...+.+.++|||+|+++++++++|+++|.+++.+.+.|+.+||..|+.||++||+.++|||+.+.......
T Consensus 2 ~~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~~- 80 (204)
T cd03506 2 LLAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLARS- 80 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEec-
Confidence 3467788888899999999999999999999999999999988999999999999999999999999998544321100
Q ss_pred HHHHh-hchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHhHhHHHHHHHhccCCCCCCccc-CCCCccHH
Q 019605 168 YAKYL-NNPLGRVITLTVTLTLGWPLYLAFNVSAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHY-HSSEWDWF 245 (338)
Q Consensus 168 ~~~~~-~~~~~~~~~~~~~~~~~w~~~l~~~~~~~g~~~~l~~~~~P~~~~~~~l~~~~~~~H~~~~~~~~-~~~~~~~~ 245 (338)
.... .....+.. ...+....++++.+ .+.+|++|.++.+.++.++++++|..++++.+ +++++||.
T Consensus 81 -~~~~~~~~~~~~~-~~~q~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~w~ 148 (204)
T cd03506 81 -EPAFGKDQKKRFL-HRYQHFYFFPLLAL----------LLLAFLVVQLAGGLWLAVVFQLNHFGMPVEDPPGESKNDWL 148 (204)
T ss_pred -ccccccchHHHHH-HHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhheEeecccccccccCCCCCcccCHH
Confidence 0000 01111111 11233334444332 15678999999999999999999999888765 45678999
Q ss_pred hhhhhc-cccCc-cchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcc
Q 019605 246 RGALAT-VDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEY 298 (338)
Q Consensus 246 ~~~l~T-~~~~~-~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~ 298 (338)
+.|++| +|... .|++|+++|+ |||+||||||+||+++||++++.+|+.|+|+
T Consensus 149 ~~q~~tt~~~~~~~~~~~l~ggl-n~qieHHLfP~ip~~~l~~~~~~v~~~~~~~ 202 (204)
T cd03506 149 ERQVLTTRNITGSPFLDWLHGGL-NYQIEHHLFPTMPRHNYPKVAPLVRELCKKH 202 (204)
T ss_pred HHHHhCcccCCCCCHHHHHhcch-hhHHHHhcCCCchhhhHHHHHHHHHHHHHHh
Confidence 999985 46654 5899999999 8999999999999999999999999999886
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=9e-37 Score=301.47 Aligned_cols=280 Identities=13% Similarity=0.138 Sum_probs=183.6
Q ss_pred CHHHHHHhCC-CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 019605 32 TLSQVKKAIP-PHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHH 110 (338)
Q Consensus 32 ~~~~lr~~l~-~~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hd~~H~ 110 (338)
.++++|+++. .++|++++......++..++++++.+++.+ + .. +++..+++++++|+.+.++++++|||+|+
T Consensus 113 ~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~~l~aillg~~~~~~g~l~HDa~H~ 185 (485)
T PLN03199 113 GYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVF-Y---SD---RFAMHIASALLLGLFFQQCGWLAHDFLHH 185 (485)
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHH-H---cC---cHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5899999998 568988865544344333334333332221 1 11 34556778999999999999999999999
Q ss_pred cccCCchhhHHHHHHHHhh-ccCchHHhHHhhcccccCCCC-------CCCCcccc--cc---hhh---hh---------
Q 019605 111 AFSDYQWLDDTVGLILHSC-LLVPYFSWKYSHRRHHSNTGS-------LDRDEVFV--PK---QKT---AI--------- 165 (338)
Q Consensus 111 s~~~~~~~N~~~G~l~~~~-~~~p~~~wr~~H~~HH~~tn~-------~~~Dpd~~--p~---~~~---~~--------- 165 (338)
++++++++|+++|.+++.. .+.|..+||..||.||++||. .++|||+. |. .+. .+
T Consensus 186 ~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~ 265 (485)
T PLN03199 186 QVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFREINADGKD 265 (485)
T ss_pred hhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhhhhhhccc
Confidence 9999999999999877654 679999999999999999997 36899963 21 100 00
Q ss_pred ----hHHH---HHhhchHHHHHHHH--HH--------------------------------H-H--HHHHHHHHhhhhhh
Q 019605 166 ----GWYA---KYLNNPLGRVITLT--VT--------------------------------L-T--LGWPLYLAFNVSAK 201 (338)
Q Consensus 166 ----~~~~---~~~~~~~~~~~~~~--~~--------------------------------~-~--~~w~~~l~~~~~~~ 201 (338)
+++. .++--|+..+..+. +. . . ++|...+.......
T Consensus 266 ~~~~~~~~~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~lp~~~~~~ 345 (485)
T PLN03199 266 SGFVKFAIKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALELEAKGLQYPLLEKAGILLHYAWMFTLSSGFGRF 345 (485)
T ss_pred cchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0100 00000100000000 00 0 0 00000000000001
Q ss_pred hhHHHHHHhhhhhHhHhHHHHHHHhccCCCCCCcccCCCCccHHhhhhhc-cccCc------cchhhhhcCCCcchhhhh
Q 019605 202 GLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALAT-VDRDY------GILNKVFHNITDTHVAHH 274 (338)
Q Consensus 202 g~~~~l~~~~~P~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~~l~T-~~~~~------~~l~~l~~nl~nyH~eHH 274 (338)
+++..+.++++..++.++++.+++.++|..++.+. +++..||.+.|+.| .|.+. .|++|++||+ |||+|||
T Consensus 346 ~~~~~l~~~~~~~~~~g~~l~~~f~l~H~~~~~~~-~~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GGL-N~QIEHH 423 (485)
T PLN03199 346 SFAYSAFYFFTATASCGFFLAIVFGLGHNGMATYD-ADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGL-QYQVDHH 423 (485)
T ss_pred cHHHHHHHHHHHHHHHhhHheEEEecCCccccccC-CCCCccHHHHHHHhccCccCCCCCcchHHHHHhccc-hhhhhhh
Confidence 12223334555556666677777789998755432 23345788999986 45532 2889999999 9999999
Q ss_pred hcCCCCcccHHHHHHHHHHhhhcc-cccCCccHHHHHHHhhcccEEe
Q 019605 275 LFSTMPHYHAMEATKAIKPILGEY-YQFDGTPFYKAMWREAKECLYV 320 (338)
Q Consensus 275 lfP~IP~~~Lp~~~~~l~~~~~~~-~~~~~~~~~~al~~~~~~~~~~ 320 (338)
|||+||++|||++.+++|+.|+|+ +.|+..++.+++.++++..+-+
T Consensus 424 LFP~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~~~~~L~~v 470 (485)
T PLN03199 424 LFPMLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTMEVLHHLGKV 470 (485)
T ss_pred cCCCCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 8888888999888887755433
No 9
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=7.1e-35 Score=271.05 Aligned_cols=238 Identities=21% Similarity=0.237 Sum_probs=161.6
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHH
Q 019605 44 CFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVG 123 (338)
Q Consensus 44 ~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G 123 (338)
+.++|+.++...++.++++++++.+++... .+++..+++.+++|+.+.+++.++|||+|++++++|++|+++|
T Consensus 9 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g 81 (285)
T cd03511 9 LMQRSDAPGLLDTALWLGALAVSGILIAWT-------WGSWWALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVG 81 (285)
T ss_pred HhCCcchhHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHH
Confidence 668899999999888888876654333211 1233344556788999999999999999999999999999999
Q ss_pred HHHHhhccCchHHhHHhhcccccCCCCCCCCcccc-cchhhhhhHH----------H---HHhhc----------h----
Q 019605 124 LILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFV-PKQKTAIGWY----------A---KYLNN----------P---- 175 (338)
Q Consensus 124 ~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~-p~~~~~~~~~----------~---~~~~~----------~---- 175 (338)
.+++.+++.|+..||..|+.||++||+.++|||.. +.++...++. . .+++. +
T Consensus 82 ~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (285)
T cd03511 82 QIAGLMILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPPTLREYLLALSGLPYWWGKLRTVFRHAFGAVSEAEKPFIPA 161 (285)
T ss_pred HHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCchHHHHHHHHHhChHHHHHHHHHHHHHHhcccccccCCCCCH
Confidence 99999999999999999999999999999999963 2222111111 0 00000 0
Q ss_pred H-HH-HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHhHhHHHHHHHhccCCCCCCcccCCCCccHHhhhhhccc
Q 019605 176 L-GR-VITLTVTLTLGWPLYLAFNVSAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVD 253 (338)
Q Consensus 176 ~-~~-~~~~~~~~~~~w~~~l~~~~~~~g~~~~l~~~~~P~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~~l~T~~ 253 (338)
. .+ ...........+...+. .....|.+.++.+|++|++++..++.+++++||.+.+ . +..++ ++ .+|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~l~~wllP~l~~~~~~~~~~~~eH~~~~--~---~~~~~-~~-trs~~ 233 (285)
T cd03511 162 EERPKVVREARAMLAVYAGLIA-LSLYLGSPLLVLVWGLPLLLGQPILRLFLLAEHGGCP--E---DANDL-RN-TRTTL 233 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--c---ccchh-hh-hhhhh
Confidence 0 00 00000000011111110 0013456667778999999988888888999998632 1 11111 22 22321
Q ss_pred cCccchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcc
Q 019605 254 RDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEY 298 (338)
Q Consensus 254 ~~~~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~ 298 (338)
.+ .|++++++|+ |||+|||+||+||+||||++++.+++.+++.
T Consensus 234 ~~-~~~~~l~~n~-nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~~ 276 (285)
T cd03511 234 TN-PPLRFLYWNM-PYHAEHHMYPSVPFHALPKLHELIKDDLPVP 276 (285)
T ss_pred hh-HHHHHHHcCC-chHHHHhcCCCCcHhHHHHHHHHHHHhCCCC
Confidence 11 4788899998 8999999999999999999999999888654
No 10
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=100.00 E-value=1.1e-33 Score=252.15 Aligned_cols=191 Identities=21% Similarity=0.306 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccccccccc-CCchhhHHHHHHHH-hhccCchHHhHHhhcccccCCCCCCCCccccc
Q 019605 82 SYLAWPVYWALQGCILTGVWVVAHECGHHAFS-DYQWLDDTVGLILH-SCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 159 (338)
Q Consensus 82 ~~~~~~l~~~~~g~~~~~l~~l~Hd~~H~s~~-~~~~~N~~~G~l~~-~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p 159 (338)
++.+.+++.++.|+.+.++++++|||+|++++ +++++|+++|.+++ .+.+.|+..||..|+.||+++|++ +|||+.+
T Consensus 28 ~~~~~~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~ 106 (225)
T cd03513 28 SLLLIAAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHK 106 (225)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCC
Confidence 44455566788999999999999999999999 79999999999985 556799999999999999999997 9999977
Q ss_pred chh-hhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHhHhHHHHHH-HhccCCCCCCccc
Q 019605 160 KQK-TAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSAKGLVYVFCIYGGPLLVVNGFLVLI-TLLQHTHPSLPHY 237 (338)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~g~~~~l~~~~~P~~~~~~~l~~~-~~~~H~~~~~~~~ 237 (338)
..+ +..+|+..++++.. ++.++ +...++|+.+.... ..+...++.+|++|.+++++++..+ +++.|..++.|..
T Consensus 107 ~~~~~~~~wy~~f~~~y~-~~~ql-i~l~ivw~~~l~~~--~~~~~~~~~~~~~P~l~~~~~l~~f~T~lpH~~~~~~~~ 182 (225)
T cd03513 107 GNPSGFLPWYLHFMSNYF-GWRQL-AILAAVWLLLLGLG--SAPLANLLLFWALPLILSSLQLFYFGTWLPHRPGRGGFA 182 (225)
T ss_pred CCCCChHHHHHHHHHhHh-HHHHH-HHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 653 44567766666552 33333 34456676665410 1256678899999999999988776 7888876544432
Q ss_pred CCCCccHHhhhhhccccCc-cchhhh-hcCCCcchhhhhhcCCCCcccHHHH
Q 019605 238 HSSEWDWFRGALATVDRDY-GILNKV-FHNITDTHVAHHLFSTMPHYHAMEA 287 (338)
Q Consensus 238 ~~~~~~~~~~~l~T~~~~~-~~l~~l-~~nl~nyH~eHHlfP~IP~~~Lp~~ 287 (338)
+ . ++.+| .++ .|++.+ |.++ +||.|||+||+|||||||++
T Consensus 183 ~-~------~~a~~--~~~~~~~~~l~c~~f-gyH~eHH~fP~~Pw~~Lp~~ 224 (225)
T cd03513 183 D-R------HRARS--SRLSPVLSFLTCYHF-GYHHEHHLSPSTPWWRLPEL 224 (225)
T ss_pred C-c------cccee--cCccHHHHHHHHHhc-CcchhhccCCCCCcccCccc
Confidence 1 1 11122 222 578885 5788 79999999999999999986
No 11
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=5.9e-33 Score=245.95 Aligned_cols=180 Identities=26% Similarity=0.421 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcccccchhh
Q 019605 84 LAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKT 163 (338)
Q Consensus 84 ~~~~l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~ 163 (338)
+-.+++.++.|+.+.+++.++|||+|++++|+|++|+++|.+++.+.+.|+..||..|+.||++||+.++|||+. .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~---~- 97 (207)
T cd03514 22 LPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF---L- 97 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH---H-
Confidence 334556777888889999999999999999999999999999998889999999999999999999999999985 0
Q ss_pred hhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHhHhHHHHH-HHhccCCCCCCcccCCCCc
Q 019605 164 AIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSAKGLVYVFCIYGGPLLVVNGFLVL-ITLLQHTHPSLPHYHSSEW 242 (338)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~g~~~~l~~~~~P~~~~~~~l~~-~~~~~H~~~~~~~~~~~~~ 242 (338)
.++. ..+.+. +......+ ...+.+.++++|++|.++.+.++.. .++++|...+ ++++|
T Consensus 98 -~~~~-------~~~~~~------~~~~~~~~---~~~~~~~~~l~~~iP~l~~~~~l~~~~~~~~H~~~~----~~~~~ 156 (207)
T cd03514 98 -LEWL-------VARSLF------ITLLVIAI---LFGFLWELLNLWFLPALIVGTYLALFFDWLPHHPFE----ETQRW 156 (207)
T ss_pred -HHHH-------HHHHHH------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCccCCC----Cccch
Confidence 0000 000000 00000000 0123445667899999999888875 5588887421 22333
Q ss_pred cHHhhhhhccccCc-c-chhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhc
Q 019605 243 DWFRGALATVDRDY-G-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGE 297 (338)
Q Consensus 243 ~~~~~~l~T~~~~~-~-~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~ 297 (338)
+. + +.. + +++++++|+ |||.|||+||+||+||||++++.+|+.+++
T Consensus 157 ~~------~--~~~~~~l~~~l~~~~-nyH~~HHL~P~IP~y~Lp~a~~~~~~~~~~ 204 (207)
T cd03514 157 DN------S--RVYPSKLLNPLIMGQ-NYHLVHHLWPSIPWYRYPEAYYANKPLLDA 204 (207)
T ss_pred hh------h--hcccchhHheeecCC-chhHHHhCCCCCchhhhHHHHHHhHHHHhh
Confidence 22 1 111 3 568899998 899999999999999999999999988754
No 12
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.98 E-value=4.6e-31 Score=246.71 Aligned_cols=276 Identities=18% Similarity=0.225 Sum_probs=176.6
Q ss_pred CCHHHHHHhCCC-CccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 019605 31 FTLSQVKKAIPP-HCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGH 109 (338)
Q Consensus 31 ~~~~~lr~~l~~-~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hd~~H 109 (338)
.+++++|+++++ +++..++.--+...+.+++..+ +++ + +-+.+.+++++++|+++++.++++||.+|
T Consensus 99 ~~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~----~a~-~-------~i~~~~l~~a~Ll~~a~~Qs~~l~Hd~gH 166 (430)
T KOG4232|consen 99 ESFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLV----LAW-L-------LIYLLSLISAVLLGLAWAQSGWLQHDYGH 166 (430)
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHH----HHH-H-------HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 478899999986 4554444332322222222221 121 1 11233667789999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHhhc-cCchHHhHHhhcccccCCCCCCCCccc--ccc-hh---hhh-----hHHHHHh-----
Q 019605 110 HAFSDYQWLDDTVGLILHSCL-LVPYFSWKYSHRRHHSNTGSLDRDEVF--VPK-QK---TAI-----GWYAKYL----- 172 (338)
Q Consensus 110 ~s~~~~~~~N~~~G~l~~~~~-~~p~~~wr~~H~~HH~~tn~~~~Dpd~--~p~-~~---~~~-----~~~~~~~----- 172 (338)
.+.+|++++|+++..+.+..+ |.|..+|+..|++||+++|..++|||. .|. .. ..+ ++.+..+
T Consensus 167 ~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~~~~~~~k~krk~~~~~~qh~ 246 (430)
T KOG4232|consen 167 LSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDPNSHEYGKKKRKYTPYPEQHL 246 (430)
T ss_pred ccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhCCCchhhhcccceeEeecccceE
Confidence 999999999999999888775 599999999999999999999999996 341 11 100 0000000
Q ss_pred -----hchHHHHH------HHHHHHHHH-----HHH--HHHhhhhhhhhHHHHHHhhhhh----HhHhHHHHHHH-hccC
Q 019605 173 -----NNPLGRVI------TLTVTLTLG-----WPL--YLAFNVSAKGLVYVFCIYGGPL----LVVNGFLVLIT-LLQH 229 (338)
Q Consensus 173 -----~~~~~~~~------~~~~~~~~~-----w~~--~l~~~~~~~g~~~~l~~~~~P~----~~~~~~l~~~~-~~~H 229 (338)
..|..+.. .++.+...- |+. ++..++...-.+.+..+.++|. +..+.+..+++ .++|
T Consensus 247 yf~~~~~p~l~~~~~~~~~~~~~~~~~~w~Dl~~~~~~~~~~~i~~~~~~~~~~~~~L~~w~~r~~~~~~s~~v~l~~nH 326 (430)
T KOG4232|consen 247 YFFLIGPPFLRLMWFQQSIIFVQTNLLLWYDLYWPDRFYLRAFIYLHWGWGLLLLSCLPNWPIRFLFSSWSFWVTLTMNH 326 (430)
T ss_pred EEEeccchHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHhhHHHhcchhhhHHHHhccCchHHHHHHHHHHHHHHhhhc
Confidence 11211110 000111111 111 1111100111112222222333 12233444444 7778
Q ss_pred CCCCCcccCCCCccHHhhhhhc-cccCc-cchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcc-cccCCccH
Q 019605 230 THPSLPHYHSSEWDWFRGALAT-VDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEY-YQFDGTPF 306 (338)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~T-~~~~~-~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~-~~~~~~~~ 306 (338)
..+++.+..+...||...|+.| .|+.. .|++|+.+++ |+|+||||||+||++||+++.+.+++.|+|+ ..+.+.++
T Consensus 327 ~~~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghl-n~qieHHLFPtmpr~nL~~v~P~Vke~c~k~~l~y~~~~~ 405 (430)
T KOG4232|consen 327 IDPEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHL-NFQIEHHLFPTMPRHNLNKVAPLVKELCKKHGLPYREKPH 405 (430)
T ss_pred cchhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhh-hhhHHhhcCCCCCccchHHHHHHHHHHHHHcCCccccchH
Confidence 7766655433337888889875 56655 5999999999 8999999999999999999999999999999 88888999
Q ss_pred HHHHHHhhcccEE
Q 019605 307 YKAMWREAKECLY 319 (338)
Q Consensus 307 ~~al~~~~~~~~~ 319 (338)
++++++..++.+-
T Consensus 406 ~~~~~~~~~~lr~ 418 (430)
T KOG4232|consen 406 FEALGDIIQQLRN 418 (430)
T ss_pred HHHHHHHHHHhhh
Confidence 9998887766543
No 13
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=99.97 E-value=5.8e-31 Score=243.29 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=145.4
Q ss_pred CccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHH-HHHHHHHHHHHHhhhhhhcccccccccCCchhhHH
Q 019605 43 HCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAW-PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDT 121 (338)
Q Consensus 43 ~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~-~l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~ 121 (338)
++|++++...+..++..++.+++++ +. .+ .+|+.. +++.++.|+.+.++++++|||+|+++||++++|++
T Consensus 10 ~L~~~~~~~~~~~~~~v~~~~~~~~-----~l---~~-~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~ 80 (289)
T cd03508 10 KLFGPDPLTKWVVLGVVLLQIITAY-----LL---RD-SSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRL 80 (289)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHHH-----HH---hc-CcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHH
Confidence 4778888776655555444444322 11 11 234433 45566777777899999999999999999999999
Q ss_pred HHHHHHhhccCchH-HhHHhhcccccCCCCCCCCcccccchhhhhhHHHHHhhchHHHHHHHHHHHHH------------
Q 019605 122 VGLILHSCLLVPYF-SWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTL------------ 188 (338)
Q Consensus 122 ~G~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 188 (338)
+|.+++.+.+.|+. .||..|+.||++||+.++|||+.+... .++++++.+.......+...
T Consensus 81 ~g~~~~~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~~------~~l~~~~~g~~~~~~~~~~~~~~rp~~~~~~~ 154 (289)
T cd03508 81 FGIFANLPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEFE------GKLFSTVLGKAIWVTLQPFFYALRPLFVRPKP 154 (289)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHhccCCCCCCCCCCcchHHH------HHHHhCchHHHHHHHHHHHHHHhcccccCCCc
Confidence 99999998999998 599999999999999889999865322 23444443321100000000
Q ss_pred --HH-----HHHHHhh---hhhhhhHHHHHHhhhhhHhHhHHHHHHHhccCCCCCCcccCCCCccHHhhhhhccccCc-c
Q 019605 189 --GW-----PLYLAFN---VSAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDY-G 257 (338)
Q Consensus 189 --~w-----~~~l~~~---~~~~g~~~~l~~~~~P~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~~l~T~~~~~-~ 257 (338)
.+ ...+.++ ...+|++.++ |+++....+ . .-| +...+...|+|+.......| +++ +
T Consensus 155 ~~~~~~~n~~~~~~~~~~l~~~~G~~~~l--yll~~~~~~----~---~~~--p~~g~~i~Eh~~~~~~~~~t--~S~y~ 221 (289)
T cd03508 155 PTRLEVINIVVQITFDYLIYYFFGWKSLA--YLLLGSFLG----G---GLH--PLAGHFISEHYVFTGKGQET--YSYYG 221 (289)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCcHHHH--HHHHHHHHH----H---hhc--ccccccccccccccccCcCC--ccchH
Confidence 00 0000000 0022333222 222222211 1 112 22333334555543222223 333 7
Q ss_pred chhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcccccCCccHHHHHHHh
Q 019605 258 ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWRE 313 (338)
Q Consensus 258 ~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~~~~~~~~~~~al~~~ 313 (338)
++|++++|+ |||.|||+||+||+|+||++++..++..++-+. ..++.+.+++-
T Consensus 222 ~~~~~~~n~-~yH~~HH~~p~iP~~~Lp~~~~~~~~~~~~~~~--~~~y~~v~~~~ 274 (289)
T cd03508 222 PLNLLTFNV-GYHNEHHDFPYIPGTRLPKLRKIAPEFYDNLPQ--HTSWPRVLYDF 274 (289)
T ss_pred HHHHHhhcc-ChHHHhcCCCCCCcccHHHHHHHCHHHHhCCCc--CCCHHHHHHHH
Confidence 999999999 899999999999999999999998877655322 23566555553
No 14
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=3e-31 Score=228.97 Aligned_cols=154 Identities=23% Similarity=0.376 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHH-HHhhccCchHHhHHhhcccccCCCCCCCCcccccc
Q 019605 82 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLI-LHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPK 160 (338)
Q Consensus 82 ~~~~~~l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l-~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~ 160 (338)
+|++.+++++++|..+.++++++|||+|++++|+|++|+++|.+ ++.+++.|+..||..|+.||+++|+ ++|||+.
T Consensus 17 ~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~-~~Dpd~~-- 93 (175)
T cd03510 17 NWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGT-EDDPDLA-- 93 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCC-CCCCcHH--
Confidence 56778888999999999999999999999999999999999975 4577889999999999999999998 8999873
Q ss_pred hhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHhHhHHH-HHHHhccCCCCCCcccCC
Q 019605 161 QKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSAKGLVYVFCIYGGPLLVVNGFL-VLITLLQHTHPSLPHYHS 239 (338)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~g~~~~l~~~~~P~~~~~~~l-~~~~~~~H~~~~~~~~~~ 239 (338)
.++.+|++|.++....+ .+..+.+|...+..
T Consensus 94 --------------------------------------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~~~~---- 125 (175)
T cd03510 94 --------------------------------------------LYLLLWLVPLLTVFPLIGRIREIAEHAGVPAD---- 125 (175)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----
Confidence 13456788888877644 45567899763211
Q ss_pred CCccHHhhhhhccccCccchh-hhh--cCCCcchhhhhhcCCCCcccHHHHHHHH
Q 019605 240 SEWDWFRGALATVDRDYGILN-KVF--HNITDTHVAHHLFSTMPHYHAMEATKAI 291 (338)
Q Consensus 240 ~~~~~~~~~l~T~~~~~~~l~-~l~--~nl~nyH~eHHlfP~IP~~~Lp~~~~~l 291 (338)
++.+ ..+.+|+ ..+|++ +++ .|+ |||.|||+||+||+|+||++++.+
T Consensus 126 ~~~~--~~~tr~~--~~~~~~r~l~~p~~~-~YH~eHHl~P~vP~~~Lp~~h~~l 175 (175)
T cd03510 126 EDPD--ARNTRTT--FGGWIERLLFAPHNI-NYHLEHHLFPAVPFYNLPKAHRIL 175 (175)
T ss_pred Ccch--hhcCccc--cccHHHHHHHcccCC-cHHHHHhCCcCCchhhHHHHHHhC
Confidence 1111 1122232 125665 454 487 899999999999999999999864
No 15
>PLN02579 sphingolipid delta-4 desaturase
Probab=99.97 E-value=3.2e-30 Score=241.27 Aligned_cols=220 Identities=16% Similarity=0.235 Sum_probs=127.7
Q ss_pred hHHHHHH-HHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHHHhhccCchH-HhHHhhcccccCCCCCCCCccccc
Q 019605 82 SYLAWPV-YWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYF-SWKYSHRRHHSNTGSLDRDEVFVP 159 (338)
Q Consensus 82 ~~~~~~l-~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p 159 (338)
+|+..++ +.++.|+...++++++|||+|+++||++++|+++|.+++.+++.|+. +||..|+.||++||+.+.|||...
T Consensus 69 ~w~~~l~~a~~~~g~~~~~lf~~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t 148 (323)
T PLN02579 69 GWPKILLVAYFFGGFLNHNLFLAIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPS 148 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCc
Confidence 4555555 56778888899999999999999999999999999999888999988 799999999999999899999632
Q ss_pred chhhhhhHHHHHhhchHHHHHHHHHHH-HHHH-HHH---------HHhhhhh-hhhHHHHHHhhhhhHhHhHHHHHHHhc
Q 019605 160 KQKTAIGWYAKYLNNPLGRVITLTVTL-TLGW-PLY---------LAFNVSA-KGLVYVFCIYGGPLLVVNGFLVLITLL 227 (338)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w-~~~---------l~~~~~~-~g~~~~l~~~~~P~~~~~~~l~~~~~~ 227 (338)
... .+++++++..++....+. .... |.. ...+..+ .++..++ .++..+..+...+....+.
T Consensus 149 ~~E------~~l~~~~~~~~~~~~~~~~f~~~rp~~~~~~~~~~~~~in~~~~~~~~~~l-~~~~G~~~llyl~~~~~~~ 221 (323)
T PLN02579 149 QGE------ARLVRNTLSKIVWVFLQLFFYALRPLFVNPKPPGLWEFINLLTQIAFDAAL-VYFAGWKSLAYLILSTFLG 221 (323)
T ss_pred hhh------HHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCchHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHh
Confidence 221 122333332211100000 0000 000 0001000 1110000 0000000000011111122
Q ss_pred cCCCCCCcccCCCCccHHhhhhhccccCc-cchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcccccCCccH
Q 019605 228 QHTHPSLPHYHSSEWDWFRGALATVDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPF 306 (338)
Q Consensus 228 ~H~~~~~~~~~~~~~~~~~~~l~T~~~~~-~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~~~~~~~~~ 306 (338)
.|.++...+...+.+.....| .| +++ +++|++++|+ |||.|||.||+||+++||++++...+.... +.. -.|+
T Consensus 222 ~~lhp~~g~~~~ehy~~~~~~-et--ysyyg~ln~l~~Ni-gYH~eHH~fP~IP~~~Lp~l~~~~pe~y~~-l~~-~~sw 295 (323)
T PLN02579 222 GGLHPMAGHFISEHYVFNPGQ-ET--YSYYGPLNLLTWNV-GYHNEHHDFPRIPGSKLHKVKEIAPEYYDN-LKS-YKSW 295 (323)
T ss_pred cccccccceeeccceeccCCC-Cc--eeehhHHHHHhhcc-cccHhhcCCCCCchhhHHHHHHhCHHHHhC-CCC-cCcH
Confidence 233444444333333322221 13 233 8999999999 899999999999999999987754433322 222 2468
Q ss_pred HHHHHHhh
Q 019605 307 YKAMWREA 314 (338)
Q Consensus 307 ~~al~~~~ 314 (338)
.+.+++=+
T Consensus 296 ~~~~~~fi 303 (323)
T PLN02579 296 SQVIYMYI 303 (323)
T ss_pred HHHHHHHH
Confidence 88888754
No 16
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.97 E-value=2.6e-30 Score=233.40 Aligned_cols=213 Identities=26% Similarity=0.393 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcccccchh
Q 019605 83 YLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQK 162 (338)
Q Consensus 83 ~~~~~l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~ 162 (338)
|+.++++.++.|..+.+++.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||+++|+.++|||..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~~~ 82 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTRRL 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchhhh
Confidence 55566778888899999999999999999999999999999999999889999999999999999999988999754410
Q ss_pred ---hh-------hhHHHHHhhchH--------------H---H-H----HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Q 019605 163 ---TA-------IGWYAKYLNNPL--------------G---R-V----ITLTVTLTLGWPLYLAFNVSAKGLVYVFCIY 210 (338)
Q Consensus 163 ---~~-------~~~~~~~~~~~~--------------~---~-~----~~~~~~~~~~w~~~l~~~~~~~g~~~~l~~~ 210 (338)
.. .+++...+.... . + . ..........+...+. .....+....++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 161 (257)
T PF00487_consen 83 PPHQPWRPLFSYRRFLFRFLLSLFFPIWYFIFFFRKRRMRRRRKRPRRYLILAALLLALLLALLA-ALFFFSPWWALLLF 161 (257)
T ss_pred hhhhhhhhhhhhhhccccccccccccchhhhhhccccccccccccchhHHHHHHHhhhhhhhhhh-hhcccccccchhHH
Confidence 00 000000000000 0 0 0 0000000000000000 00122334566677
Q ss_pred hhhhHhHhHHHHHHHhccCCCCCCcccCCCCccHHhhhhhc-cccCc-cchhhhhcCCCcchhhhhhcCCCCcccHHHHH
Q 019605 211 GGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALAT-VDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEAT 288 (338)
Q Consensus 211 ~~P~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~~l~T-~~~~~-~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~ 288 (338)
++|.++...++..+++++|...+. ...++..++...++.+ ++... .+++++++|+ |||+|||+||+||+++||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~H~~HHl~P~vp~~~l~~~~ 239 (257)
T PF00487_consen 162 LLPFLIGSFFLAFVTYLEHYGLDP-DDNEDTRDFYYRQLPGSSNVHNSWWLNWLTGGL-NYHIEHHLFPGVPWYNLPEAH 239 (257)
T ss_pred HHHHhHHHHHHHHhhHHhhhcccc-cccccccceecccccccccccCchhhhccccCC-CChHHhCCCCCcCHHHHHHHH
Confidence 888888888888888999987543 1122333454555553 33322 4789999999 899999999999999999999
Q ss_pred HHHHHhhhcc
Q 019605 289 KAIKPILGEY 298 (338)
Q Consensus 289 ~~l~~~~~~~ 298 (338)
+.+++.++++
T Consensus 240 ~~~~~~~~~~ 249 (257)
T PF00487_consen 240 PILKEVCPEY 249 (257)
T ss_pred HHHHHHHHHc
Confidence 9999999887
No 17
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.96 E-value=4.7e-28 Score=224.36 Aligned_cols=196 Identities=20% Similarity=0.183 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCC--CCCCcccccchhhh-
Q 019605 88 VYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGS--LDRDEVFVPKQKTA- 164 (338)
Q Consensus 88 l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~--~~~Dpd~~p~~~~~- 164 (338)
++.+++|+.....+.++|||+|+++||+|++|+++|.++ ..++.|+..||..|+.||++||. .++|||....+..+
T Consensus 29 ~~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~ 107 (288)
T cd03509 29 LATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQW 107 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHH
Confidence 346667777777788999999999999999999999875 34459999999999999999994 45899864332211
Q ss_pred ------hhHHHHHhhchHHHHH-----HHH--HHH------------HHHHHHHHHhhhh---hhh-h-HHHHHHhhhhh
Q 019605 165 ------IGWYAKYLNNPLGRVI-----TLT--VTL------------TLGWPLYLAFNVS---AKG-L-VYVFCIYGGPL 214 (338)
Q Consensus 165 ------~~~~~~~~~~~~~~~~-----~~~--~~~------------~~~w~~~l~~~~~---~~g-~-~~~l~~~~~P~ 214 (338)
.+..++.++++.++++ .+. .+. ...|...+...+. ... . .....+|++|.
T Consensus 108 ~~~~~~~r~~~~~~~~~~~~~l~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 187 (288)
T cd03509 108 ARLPRWQRALLRANNTLLGRLILGPPLGLIAFARDEFRALRAGDRAALRAWLLHAALLAPLLAWLQLSAGIPWWAYLLAV 187 (288)
T ss_pred hhCcHHHHHHHHHhhcchhHHhhhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1223344455444321 000 000 0011100000000 000 0 00112223333
Q ss_pred HhHh-HHHHHHHhccCCCCCCcccCCCCccHHhhhhhccccCc-cchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHH
Q 019605 215 LVVN-GFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIK 292 (338)
Q Consensus 215 ~~~~-~~l~~~~~~~H~~~~~~~~~~~~~~~~~~~l~T~~~~~-~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~ 292 (338)
.+.+ ....+.++.||.... + ..+ +|+..+. ++++++++|+ |||.|||++|+||+|+||++++.++
T Consensus 188 ~~la~~~~~~~~~~Eh~~~~---------~--~~~-rs~~~~~~~~~~~l~~ni-nyH~~HH~~P~vP~y~Lp~~h~~~~ 254 (288)
T cd03509 188 YYPALSLAKIRTFLEHRAHE---------R--PRG-RTVINEAGGPLRLLFLNN-NLHVVHHDLPTLPWYDLPRLYRARR 254 (288)
T ss_pred HHHHHHHHhhchHhhccCCC---------C--ccC-CceeeeCcHHHHHHHhcC-CchHhhcCCCCCCcccHHHHHHHhH
Confidence 3322 223445566665421 1 111 2321222 3689999998 8999999999999999999999999
Q ss_pred Hhhhc
Q 019605 293 PILGE 297 (338)
Q Consensus 293 ~~~~~ 297 (338)
+.+++
T Consensus 255 ~~~~~ 259 (288)
T cd03509 255 DAYLR 259 (288)
T ss_pred HHHhh
Confidence 88765
No 18
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.86 E-value=9.5e-21 Score=165.78 Aligned_cols=253 Identities=21% Similarity=0.286 Sum_probs=145.9
Q ss_pred CCCCC-CHHHHHHhCC--CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHH-HHHHHHHHHHhhhh
Q 019605 27 SKPPF-TLSQVKKAIP--PHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPV-YWALQGCILTGVWV 102 (338)
Q Consensus 27 ~~~~~-~~~~lr~~l~--~~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l-~~~~~g~~~~~l~~ 102 (338)
|.|-- ..+++.++.| +.+|.+++.-.+..+.. ++.- ...+ ++ +.. ++|...+. +.++.|+.-..++.
T Consensus 16 eePHasRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~--Vi~Q--~~~~--~l--l~d-l~W~~il~~AYf~gg~iNhsl~L 86 (324)
T KOG2987|consen 16 EEPHASRRKEILAKYPEIKSLFGPDPNLKWVVLGM--VILQ--ILAA--YL--LRD-LDWKWILFIAYFFGGFINHSLTL 86 (324)
T ss_pred CCcchhHHHHHHHhChHHHHHhCCCcchHHHHHHH--HHHH--HHHH--HH--Hhc-ccHHHHHHHHHHhhhhhchhHHH
Confidence 44533 4889999999 47899998765433221 1111 1112 21 122 24443333 46777888889999
Q ss_pred hhcccccccccCC--chhhHHHHHHHHhhccCchH-HhHHhhcccccCCCCCCCCcccccchhhhhhHHHHHhhchHHHH
Q 019605 103 VAHECGHHAFSDY--QWLDDTVGLILHSCLLVPYF-SWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRV 179 (338)
Q Consensus 103 l~Hd~~H~s~~~~--~~~N~~~G~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~ 179 (338)
..||.+|+..|++ +..|+++|.++..|++.|++ +.|..|..||++.+.++-|-|....... .++.++.+.+
T Consensus 87 AIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~Ea------~~f~t~~~K~ 160 (324)
T KOG2987|consen 87 AIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFEA------WLFDTAFGKL 160 (324)
T ss_pred HHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhhe------ehhhhhhHHH
Confidence 8999999999987 88999999999999998887 8999999999999988888776322111 1223333332
Q ss_pred HHHHHHHH-HHH-HHHHH---------hhh-----------hhhhhHHHHHHhhhhhHhHhHHHHHHHhccCCCCCCccc
Q 019605 180 ITLTVTLT-LGW-PLYLA---------FNV-----------SAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHY 237 (338)
Q Consensus 180 ~~~~~~~~-~~w-~~~l~---------~~~-----------~~~g~~~~l~~~~~P~~~~~~~l~~~~~~~H~~~~~~~~ 237 (338)
+.+..|.. .++ |+++. .|. .++|+..++ +++.+.++ ..--| |..-++
T Consensus 161 iw~~lQpfFY~fRPl~i~pkp~t~me~iN~iiQ~~fd~li~~f~G~ksl~------Yll~~s~l---g~gLH--P~aGHF 229 (324)
T KOG2987|consen 161 IWVTLQPFFYAFRPLFIYPKPPTDMEFINTIIQLSFDLLIVYFFGWKSLA------YLLASSFL---GMGLH--PIAGHF 229 (324)
T ss_pred HHHHHHHHHHhhhhheecCCCchHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHH---cCCCC--cccchh
Confidence 22221110 000 11000 000 012222211 11111111 11112 111222
Q ss_pred CCCCccHHhhhhhccccCc-cchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhcccccC--CccHHHHHHHh
Q 019605 238 HSSEWDWFRGALATVDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFD--GTPFYKAMWRE 313 (338)
Q Consensus 238 ~~~~~~~~~~~l~T~~~~~-~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~~~~~--~~~~~~al~~~ 313 (338)
-.|...+.++| +| .+| |++|+++.|. +||+|||-||.||..+||++.++.. |||.-- -.|..+-+++-
T Consensus 230 isEHY~f~k~~-ET--ySYYGplN~~tfNv-GYH~EHHDFP~Ipg~~Lp~Vr~iAp----EyYd~lp~~~Sw~~vlydf 300 (324)
T KOG2987|consen 230 ISEHYMFKKGQ-ET--YSYYGPLNLLTFNV-GYHVEHHDFPYIPGSRLPKVREIAP----EYYDNLPQHKSWVGVLYDF 300 (324)
T ss_pred hHhhhhhcCCc-cc--eeeecceeeEEEec-ccccccccCCCCCccccHHHHHhhH----HHhcCchhhchHHHHHHHH
Confidence 22222333332 34 343 9999999999 6999999999999999999877655 443321 13566666553
No 19
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.78 E-value=2.9e-19 Score=144.88 Aligned_cols=60 Identities=38% Similarity=0.616 Sum_probs=56.1
Q ss_pred hhhhhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcccc
Q 019605 99 GVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFV 158 (338)
Q Consensus 99 ~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~ 158 (338)
++..++|||+|++++++|++|++++.+++.+.+.|+..|+..|+.||+++|+.++|||..
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~ 73 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDSA 73 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCccc
Confidence 777789999999999999999999999999888999999999999999999988999873
No 20
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.77 E-value=9.3e-18 Score=157.50 Aligned_cols=224 Identities=17% Similarity=0.140 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHHHHHHHhh-hhhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhc-ccccCCCCCCCCcccc
Q 019605 81 LSYLAWPVYWALQGCILTGV-WVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHR-RHHSNTGSLDRDEVFV 158 (338)
Q Consensus 81 ~~~~~~~l~~~~~g~~~~~l-~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~-~HH~~tn~~~~Dpd~~ 158 (338)
.+|+..+.+.+.+|+...++ ..++||++| |++++|+++|.++..+. ++..|+..|+ .||+++++ ++|||..
T Consensus 67 ~~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~--~~~~~~~~H~~~HH~~v~t-p~DP~ta 139 (314)
T cd03512 67 LSALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL--LYGHFAIEHVRGHHRYVAT-PEDPATA 139 (314)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh--cccceeeeecccCCCCCCC-CCCcccc
Confidence 46777777778888777644 447888888 67999999999877654 4555889999 89999997 7999975
Q ss_pred cchhhhhhHHHH----HhhchHH----HH-------HHH---HHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHhHhHH
Q 019605 159 PKQKTAIGWYAK----YLNNPLG----RV-------ITL---TVTLTLGWPLYLAFNVSAKGLVYVFCIYGGPLLVVNGF 220 (338)
Q Consensus 159 p~~~~~~~~~~~----~~~~~~~----~~-------~~~---~~~~~~~w~~~l~~~~~~~g~~~~l~~~~~P~~~~~~~ 220 (338)
......++++.+ .++..++ ++ ... +......+.+.+ .....++.+..+.++++|.+++.+.
T Consensus 140 r~ge~~y~f~~r~~~g~~~~aw~~e~~rl~~~g~~~~~~~n~~l~~~~~~~a~~-~~~~~~~g~~~l~~~l~~~~~g~~~ 218 (314)
T cd03512 140 RRGESFYRFLPRALVGSFRSAWKLEKKRLRRKGRSPWSPRNEVLRYLALAVALL-ALAAALGGLAGLLFLLIQAFYAKSL 218 (314)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222211110 0000100 00 000 001111111111 0011233345556778888888888
Q ss_pred HHHHHhccCCCCCCcccCCCCccHHhhhhh-ccccCccchhhhhcCCCcchhhhhhcCCCCcccHHHHHHHHHHhhhccc
Q 019605 221 LVLITLLQHTHPSLPHYHSSEWDWFRGALA-TVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY 299 (338)
Q Consensus 221 l~~~~~~~H~~~~~~~~~~~~~~~~~~~l~-T~~~~~~~l~~l~~nl~nyH~eHHlfP~IP~~~Lp~~~~~l~~~~~~~~ 299 (338)
+..+.|+||.+ +....+++-.+.+-+-. +-|.+....|++++|+ ++|.+||.+|++|++.|+...+. +.+|.-|
T Consensus 219 l~~~nY~EHyG--L~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl-~rHsdHH~~p~~~y~~L~~~~~~--p~lP~~y 293 (314)
T cd03512 219 LELVNYIEHYG--LLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNL-QRHSDHHAHPTRPYQALRPFPEA--PQLPSGY 293 (314)
T ss_pred HHHHHHHHhcC--CccccCCCCccccCCCccCcCcCcHHHHHHHHhc-chhhhhccCCCCchhhccCCccC--CCCCccH
Confidence 88999999987 32211111011111001 1122213568899999 89999999999999999986654 3333222
Q ss_pred ccC-CccHHHHHHHhhccc
Q 019605 300 QFD-GTPFYKAMWREAKEC 317 (338)
Q Consensus 300 ~~~-~~~~~~al~~~~~~~ 317 (338)
.-- ...+...+|....+.
T Consensus 294 ~~m~~~al~P~lw~~~m~~ 312 (314)
T cd03512 294 PVMALLALIPPLWRRVMDP 312 (314)
T ss_pred HHHHHHHHhhHHHHHhhcc
Confidence 100 012445667665543
No 21
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.70 E-value=5e-07 Score=81.17 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=41.8
Q ss_pred hccc-ccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCc
Q 019605 104 AHEC-GHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDE 155 (338)
Q Consensus 104 ~Hd~-~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dp 155 (338)
-|-| +|+++.-.+++..++......-+..|..+|-..|.+||++| +.++||
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~t-DTd~DP 117 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKT-DTDQDP 117 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhccc-CCCCCC
Confidence 4654 78888888898888876655556699999999999999999 567888
No 22
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=98.64 E-value=4.4e-08 Score=78.73 Aligned_cols=49 Identities=45% Similarity=0.787 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHhCCCCccccChHHHHHHHHHHHHHHHHHH
Q 019605 19 DPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFY 67 (338)
Q Consensus 19 ~~~~~~~~~~~~~~~~~lr~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~ 67 (338)
+..++++.++|++|++|||++||++||++|++|+..|+++|++++++++
T Consensus 87 ~~~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gLA 135 (136)
T PF11960_consen 87 EEEEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGLA 135 (136)
T ss_pred cccccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHhc
Confidence 4567789999999999999999999999999999999999999987553
No 23
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.36 E-value=2.3e-05 Score=72.94 Aligned_cols=48 Identities=31% Similarity=0.443 Sum_probs=38.8
Q ss_pred cccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCc
Q 019605 107 CGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDE 155 (338)
Q Consensus 107 ~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dp 155 (338)
-+|+++--++++..++..+.......|...|-..|..||+++.+ ++||
T Consensus 80 ~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt-~~DP 127 (299)
T PLN02220 80 LAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDS-DRDP 127 (299)
T ss_pred HHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCc
Confidence 57888888888887776665555559999999999999999965 6776
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=97.84 E-value=0.0002 Score=65.93 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=40.1
Q ss_pred cccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCcc
Q 019605 107 CGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEV 156 (338)
Q Consensus 107 ~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd 156 (338)
=+|.++--++++.-++..+....+..+...|-+.|..||++|.+ ++||-
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdT-D~DPh 139 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDT-DADPH 139 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhcccccc-CCCCC
Confidence 57888888888888887766555568889999999999999975 78874
No 25
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=97.55 E-value=0.00083 Score=57.93 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=40.3
Q ss_pred cccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCc
Q 019605 107 CGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDE 155 (338)
Q Consensus 107 ~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dp 155 (338)
.+|+++..++++..++..+.......|...|-..|..||+++.+ ++||
T Consensus 27 ~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt-~~DP 74 (178)
T cd03505 27 WAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDT-DGDP 74 (178)
T ss_pred HhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCC-CCCC
Confidence 57899988999998887776665569999999999999999975 5776
No 26
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=34.46 E-value=1.3e+02 Score=26.89 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=30.5
Q ss_pred CHHHHHHhCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHHHH
Q 019605 32 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILT 98 (338)
Q Consensus 32 ~~~~lr~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 98 (338)
.++++++...- --+.+++-.++.++.-++.++++..+.+ + . + +|+++++.++++|++..
T Consensus 9 ~~~Qi~q~y~~-trk~dp~l~~~ml~a~l~~~~v~v~ig~-l---~-~--~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 9 RRKQIWQAYKM-TRKEDPKLPWLMLGAFLGPIAVFVLIGL-L---F-G--SWWYWLIIGILLGLLAA 67 (224)
T ss_pred HHHHHHHHHHH-HHHHCcchHHHHHHHHHHHHHHHHHHHH-H---H-c--cHHHHHHHHHHHHHHHH
Confidence 57777776552 0133444555555544444443333332 1 1 2 46667777777776443
No 27
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=33.01 E-value=3.1e+02 Score=25.41 Aligned_cols=15 Identities=20% Similarity=-0.095 Sum_probs=11.7
Q ss_pred HhhcccccCCCCCCC
Q 019605 139 YSHRRHHSNTGSLDR 153 (338)
Q Consensus 139 ~~H~~HH~~tn~~~~ 153 (338)
..|..||.++..+-.
T Consensus 230 nyH~~HH~~P~vP~y 244 (288)
T cd03509 230 NLHVVHHDLPTLPWY 244 (288)
T ss_pred CchHhhcCCCCCCcc
Confidence 468899999987543
No 28
>PLN02505 omega-6 fatty acid desaturase
Probab=26.01 E-value=2.9e+02 Score=26.86 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHHH
Q 019605 90 WALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILH 127 (338)
Q Consensus 90 ~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~ 127 (338)
+++.+..+..++.++|---.-...+.+-+|-.-|.+.+
T Consensus 259 ~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 259 LLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 45555556666778997666666677788888777654
No 29
>PLN02579 sphingolipid delta-4 desaturase
Probab=21.17 E-value=5.1e+02 Score=24.56 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCC
Q 019605 85 AWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTG 149 (338)
Q Consensus 85 ~~~l~~~~~g~~~~~l~~l~Hd~~H~s~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn 149 (338)
++++++++....+...=-.+|.+.-.+-.-|+++-.+.+...+.+.......+-..|..+=....
T Consensus 77 a~~~~g~~~~~lf~~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~ 141 (323)
T PLN02579 77 AYFFGGFLNHNLFLAIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDG 141 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCC
Confidence 45666666555566666778999999999999999988877787766666776677776655433
Done!