Query 019605
Match_columns 338
No_of_seqs 204 out of 1749
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 04:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dae_A KIAA0733 protein; mitog 60.5 6 0.00021 27.5 2.6 34 268-301 10-58 (75)
2 2kpm_A Uncharacterized protein 12.5 4E+02 0.014 19.7 5.3 58 281-338 39-98 (105)
3 2lj9_A CP12 domain-containing 9.5 65 0.0022 23.9 0.0 22 2-23 13-34 (99)
4 2zjr_Z 50S ribosomal protein L 8.6 73 0.0025 21.2 -0.1 19 7-25 4-22 (60)
5 3iu6_A Protein polybromo-1; PB 8.4 2.2E+02 0.0074 22.6 2.7 44 7-64 35-78 (147)
6 3cqb_A Probable protease HTPX 6.9 81 0.0028 23.3 -0.5 13 99-111 83-95 (107)
7 3b4r_A Putative zinc metallopr 6.2 2.5E+02 0.0085 23.7 2.2 13 102-114 51-63 (224)
8 2k57_A Putative lipoprotein; s 6.2 1.2E+02 0.0042 20.3 0.2 17 4-20 11-27 (61)
9 2kzv_A Uncharacterized protein 5.6 8.3E+02 0.028 17.4 4.7 55 281-337 26-81 (92)
10 3bdu_A Putative lipoprotein; X 5.6 1.2E+02 0.004 20.4 -0.2 17 4-20 11-27 (62)
No 1
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.45 E-value=6 Score=27.52 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=28.1
Q ss_pred cchhhhhh---cCCCC-----------cccHHHHHHHHHHhhhcc-ccc
Q 019605 268 DTHVAHHL---FSTMP-----------HYHAMEATKAIKPILGEY-YQF 301 (338)
Q Consensus 268 nyH~eHHl---fP~IP-----------~~~Lp~~~~~l~~~~~~~-~~~ 301 (338)
++|+-|.| ||.|| .+|+.++-..+.++.++| |-+
T Consensus 10 d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~kYLY~e 58 (75)
T 2dae_A 10 DFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYLYGE 58 (75)
T ss_dssp CHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhcccceecc
Confidence 78888888 89998 478888899999888888 544
No 2
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=12.51 E-value=4e+02 Score=19.74 Aligned_cols=58 Identities=7% Similarity=0.092 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHHhhhcc-cccCCccHHHHHHHh-hcccEEecCCCCCCCccEEEeecCC
Q 019605 281 HYHAMEATKAIKPILGEY-YQFDGTPFYKAMWRE-AKECLYVEPDEGDQNKGVFWYRNKI 338 (338)
Q Consensus 281 ~~~Lp~~~~~l~~~~~~~-~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (338)
|.+|-++-..|++..|.+ -+-.+.+-+..|.+. ...--+.+.+++..++.++..|.|+
T Consensus 39 Wa~Lg~vG~~L~k~~PdFDpRnYGy~kLs~Li~a~~~~FEi~~r~~~~~~~~~vyvr~~~ 98 (105)
T 2kpm_A 39 WANLGNFGNYLNKLQPDFDSRLYGYKKLSDLVKARTDLFVTEERQVPGSTQKALYLRAKL 98 (105)
T ss_dssp CEEHHHHHHHHHHHCTTCCGGGTTCSSHHHHHHHCTTTEEEEEEECTTCSSEEEEEEECC
T ss_pred cEeHHHHHHHHHHhCcCCCccccCcccHHHHHHhhCCcEEEEeecCCCCCceEEEEehhc
Confidence 666777778888877777 333333335566666 5444555556666667788888764
No 3
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=9.51 E-value=65 Score=23.87 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCCccccCCCCCCCCCCCCCC
Q 019605 2 GAGGRMAVPSTPMKVDSDPLKR 23 (338)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (338)
|.-||+.||.+++...++.+++
T Consensus 13 ~~~~~~~~~~p~~~~L~e~Ie~ 34 (99)
T 2lj9_A 13 GLVPRGSHMAAPEGGISDVVEK 34 (99)
T ss_dssp ----------------------
T ss_pred CccCccccCCCchHHHHHHHHH
Confidence 5668999998888776666653
No 4
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=8.55 E-value=73 Score=21.24 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=14.4
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 019605 7 MAVPSTPMKVDSDPLKRVP 25 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (338)
||||+.+..+..+-.+|+.
T Consensus 4 MAVPKrK~Sksrr~~RRsh 22 (60)
T 2zjr_Z 4 HPVPKKKTSKSKRDMRRSH 22 (60)
T ss_dssp CSCCSSCCCTTHHHHHTTT
T ss_pred cccCCCCCChHHhhhhccc
Confidence 8888888877766666665
No 5
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=8.43 E-value=2.2e+02 Score=22.61 Aligned_cols=44 Identities=14% Similarity=0.374 Sum_probs=28.9
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHhCCCCccccChHHHHHHHHHHHHHHH
Q 019605 7 MAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAF 64 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~f~~~~~~~~~~~~~~~~~~~ 64 (338)
+..|+..++|-+ +.+++++.||+++.+.-++ .+-.+..|+..++
T Consensus 35 ~~LPsk~pdYY~---------k~Pi~l~~Ikkri~~~~Y~-----sld~f~~D~~lmf 78 (147)
T 3iu6_A 35 AEIPAVDPNFPN---------KPPLTFDIIRKNVENNRYR-----RLDLFQEHMFEVL 78 (147)
T ss_dssp TTCCSSCTTSTT---------SCCCCHHHHHHHHHTTCCC-----CHHHHHHHHHHHH
T ss_pred hHCCCCCccccC---------CCCcCHHHHHHHHhcCCCC-----CHHHHHHHHHHHH
Confidence 345666655432 5678999999999976543 3445666766654
No 6
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=6.89 E-value=81 Score=23.31 Aligned_cols=13 Identities=46% Similarity=0.483 Sum_probs=9.7
Q ss_pred hhhhhhccccccc
Q 019605 99 GVWVVAHECGHHA 111 (338)
Q Consensus 99 ~l~~l~Hd~~H~s 111 (338)
-.++++||.+|..
T Consensus 83 l~aVlaHElgH~~ 95 (107)
T 3cqb_A 83 AEAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3446899999965
No 7
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=6.21 E-value=2.5e+02 Score=23.70 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=9.7
Q ss_pred hhhcccccccccC
Q 019605 102 VVAHECGHHAFSD 114 (338)
Q Consensus 102 ~l~Hd~~H~s~~~ 114 (338)
++.||.+|.-..|
T Consensus 51 v~~HElgH~~~A~ 63 (224)
T 3b4r_A 51 VVLHELGHSYVAK 63 (224)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3579999986643
No 8
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=6.19 E-value=1.2e+02 Score=20.26 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=12.5
Q ss_pred CCccccCCCCCCCCCCC
Q 019605 4 GGRMAVPSTPMKVDSDP 20 (338)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (338)
-||+.+-.++|+++.+.
T Consensus 11 DG~~IvT~gKP~~D~dT 27 (61)
T 2k57_A 11 DGREIQAVDTPKYDEES 27 (61)
T ss_dssp SSCEEEESSCCEECTTT
T ss_pred CCcEEEcCCCccccCCC
Confidence 47888888888877664
No 9
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=5.65 E-value=8.3e+02 Score=17.36 Aligned_cols=55 Identities=11% Similarity=-0.102 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHhhhcc-cccCCccHHHHHHHhhcccEEecCCCCCCCccEEEeecC
Q 019605 281 HYHAMEATKAIKPILGEY-YQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 337 (338)
Q Consensus 281 ~~~Lp~~~~~l~~~~~~~-~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (338)
|.+|-++-..|++..|.+ -+..+.+-+..|.+.....-+.+.+++. .-++++|.|
T Consensus 26 Wa~Lg~vG~~i~k~~PdFD~RnYGy~kLs~Li~~~~~fe~~~~~~~~--~~~i~vR~~ 81 (92)
T 2kzv_A 26 WAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDFLTVQESRNGS--KLHSEIRLR 81 (92)
T ss_dssp SCBHHHHHHHHHHHCTTCCTTTTCSSHHHHHHHTCTTEEEEEEEETT--EEEEEEEEC
T ss_pred cEeHHHHHHHHHHhCcCCCccccCcccHHHHHHhcCcEEEEEcCCCC--ceEEEEEeC
Confidence 566777777888777776 3333444455666664433443333322 446777764
No 10
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=5.57 E-value=1.2e+02 Score=20.44 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=12.3
Q ss_pred CCccccCCCCCCCCCCC
Q 019605 4 GGRMAVPSTPMKVDSDP 20 (338)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (338)
-|||.+-.++|+++.+.
T Consensus 11 DG~~IvT~gKP~~D~dT 27 (62)
T 3bdu_A 11 DGRTIVAEGKPKVDDET 27 (62)
T ss_dssp TSCEEEEESCCEECTTT
T ss_pred CCcEEEcCCCcceeCCC
Confidence 47777777888777664
Done!