BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019606
         (338 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F51|A Chain A, A Transient Interaction Between Two Phosphorelay Proteins
           Trapped In A Crystal Lattice Reveals The Mechanism Of
           Molecular Recognition And Phosphotransfer In Singal
           Transduction
 pdb|1F51|B Chain B, A Transient Interaction Between Two Phosphorelay Proteins
           Trapped In A Crystal Lattice Reveals The Mechanism Of
           Molecular Recognition And Phosphotransfer In Singal
           Transduction
 pdb|1F51|C Chain C, A Transient Interaction Between Two Phosphorelay Proteins
           Trapped In A Crystal Lattice Reveals The Mechanism Of
           Molecular Recognition And Phosphotransfer In Singal
           Transduction
 pdb|1F51|D Chain D, A Transient Interaction Between Two Phosphorelay Proteins
           Trapped In A Crystal Lattice Reveals The Mechanism Of
           Molecular Recognition And Phosphotransfer In Singal
           Transduction
          Length = 182

 Score = 34.3 bits (77), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 224 ELFDSNVRQEFESENY-TFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGD 282
            LFD  V +E  SEN+ T  +     +R  IL  +  GAF  P   A+++++QN  E+ D
Sbjct: 109 HLFDQAVSRE--SENHLTVSLQTDHPDRQLILYLDFHGAFADP--SAFDDIRQNGYEDVD 164

Query: 283 DVEFRIVESQCAVRPGL 299
            + F I   +C +  GL
Sbjct: 165 IMRFEITSHECLIEIGL 181


>pdb|1IXM|A Chain A, Crystal Structure Of Spoob From Bacillus Subtilis
 pdb|1IXM|B Chain B, Crystal Structure Of Spoob From Bacillus Subtilis
 pdb|2FTK|A Chain A, Berylloflouride Spo0f Complex With Spo0b
 pdb|2FTK|B Chain B, Berylloflouride Spo0f Complex With Spo0b
 pdb|2FTK|C Chain C, Berylloflouride Spo0f Complex With Spo0b
 pdb|2FTK|D Chain D, Berylloflouride Spo0f Complex With Spo0b
          Length = 192

 Score = 34.3 bits (77), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 224 ELFDSNVRQEFESENY-TFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGD 282
            LFD  V +E  SEN+ T  +     +R  IL  +  GAF  P   A+++++QN  E+ D
Sbjct: 119 HLFDQAVSRE--SENHLTVSLQTDHPDRQLILYLDFHGAFADP--SAFDDIRQNGYEDVD 174

Query: 283 DVEFRIVESQCAVRPGL 299
            + F I   +C +  GL
Sbjct: 175 IMRFEITSHECLIEIGL 191


>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
           Prototype For Matrix
           Metalloproteinases(Slash)collagenases
          Length = 202

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 271 EELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPG 313
            EL  N+G E D  +     S C +RPGL     Y++ D   G
Sbjct: 142 HELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDDSMG 184


>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647
 pdb|3AIG|A Chain A, Adamalysin Ii With Peptidomimetic Inhibitor Pol656
          Length = 202

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 271 EELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPG 313
            EL  N+G E D  +     S C +RPGL     Y++ D   G
Sbjct: 142 HELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDDSMG 184


>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor
          Length = 201

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 271 EELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPG 313
            EL  N+G E D  +     S C +RPGL     Y++ D   G
Sbjct: 141 HELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDDSMG 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,262,984
Number of Sequences: 62578
Number of extensions: 409204
Number of successful extensions: 836
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 6
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)