Query 019606
Match_columns 338
No_of_seqs 146 out of 260
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2983 Uncharacterized conser 100.0 3E-101 6E-106 715.3 24.7 320 4-328 1-327 (334)
2 PF07065 D123: D123; InterPro 100.0 1.4E-91 3.1E-96 673.4 30.1 288 17-313 1-299 (299)
3 PF14243 DUF4343: Domain of un 98.1 1.1E-05 2.3E-10 69.5 8.5 82 169-260 35-116 (130)
4 TIGR00768 rimK_fam alpha-L-glu 96.8 0.015 3.3E-07 54.0 11.7 138 97-260 114-256 (277)
5 PF08443 RimK: RimK-like ATP-g 96.8 0.015 3.3E-07 52.2 10.8 135 96-261 28-170 (190)
6 PRK01372 ddl D-alanine--D-alan 96.2 0.094 2E-06 50.0 12.7 138 98-267 125-277 (304)
7 TIGR02144 LysX_arch Lysine bio 96.1 0.13 2.7E-06 48.3 13.3 141 97-263 113-257 (280)
8 PF13535 ATP-grasp_4: ATP-gras 95.2 0.12 2.6E-06 44.7 8.7 135 96-258 29-177 (184)
9 TIGR01205 D_ala_D_alaTIGR D-al 94.5 1.1 2.3E-05 42.9 13.8 132 100-263 140-288 (315)
10 PRK10446 ribosomal protein S6 94.1 0.94 2E-05 43.5 12.5 136 96-261 124-266 (300)
11 PRK05586 biotin carboxylase; V 93.9 1.7 3.6E-05 44.3 14.6 139 97-260 143-293 (447)
12 PRK01966 ddl D-alanyl-alanine 93.7 1.9 4.1E-05 42.2 14.0 139 98-268 154-309 (333)
13 PRK08463 acetyl-CoA carboxylas 93.5 2.4 5.2E-05 43.8 15.0 141 97-260 143-293 (478)
14 PF07478 Dala_Dala_lig_C: D-al 93.4 2.4 5.2E-05 38.8 13.3 139 98-268 25-183 (203)
15 PRK14569 D-alanyl-alanine synt 92.2 0.67 1.4E-05 44.6 8.4 134 102-268 126-273 (296)
16 PRK14570 D-alanyl-alanine synt 91.9 5.8 0.00013 39.6 14.8 134 103-268 168-324 (364)
17 PRK07178 pyruvate carboxylase 90.8 7.3 0.00016 40.1 14.6 139 98-261 143-293 (472)
18 PRK08591 acetyl-CoA carboxylas 90.6 7.9 0.00017 39.1 14.6 140 97-261 143-294 (451)
19 TIGR00514 accC acetyl-CoA carb 90.2 9.6 0.00021 38.7 14.9 140 96-260 142-293 (449)
20 PRK06111 acetyl-CoA carboxylas 89.7 11 0.00024 38.0 14.8 138 98-260 144-293 (450)
21 PRK14572 D-alanyl-alanine synt 89.5 10 0.00022 37.3 13.9 137 99-268 164-323 (347)
22 PRK08462 biotin carboxylase; V 88.1 15 0.00034 37.1 14.6 140 97-261 145-296 (445)
23 TIGR02068 cya_phycin_syn cyano 86.6 2.8 6E-05 46.6 8.8 144 97-274 239-407 (864)
24 PRK14573 bifunctional D-alanyl 86.6 14 0.00029 40.8 14.0 141 97-268 601-764 (809)
25 PLN02941 inositol-tetrakisphos 86.0 6.6 0.00014 39.0 10.2 87 171-261 186-305 (328)
26 TIGR01142 purT phosphoribosylg 85.9 21 0.00046 35.0 13.8 138 96-261 126-273 (380)
27 PRK06849 hypothetical protein; 85.8 3.2 7E-05 41.2 8.0 92 172-274 188-288 (389)
28 TIGR01235 pyruv_carbox pyruvat 84.9 28 0.00061 40.2 15.8 141 97-262 143-295 (1143)
29 TIGR01161 purK phosphoribosyla 84.8 25 0.00054 34.4 13.6 132 96-261 123-266 (352)
30 PRK06019 phosphoribosylaminoim 83.2 32 0.0007 34.1 13.8 130 97-260 126-267 (372)
31 PRK12833 acetyl-CoA carboxylas 81.9 43 0.00093 34.4 14.5 139 98-261 147-297 (467)
32 PF15585 Imm46: Immunity prote 81.2 9.3 0.0002 33.2 7.8 95 90-204 22-118 (129)
33 PF02655 ATP-grasp_3: ATP-gras 80.9 3.7 8.1E-05 35.9 5.5 38 219-258 117-156 (161)
34 PRK12999 pyruvate carboxylase; 80.6 41 0.00089 38.9 15.0 140 97-261 147-298 (1146)
35 PRK14571 D-alanyl-alanine synt 79.8 15 0.00032 35.1 9.8 133 103-268 122-273 (299)
36 PRK13790 phosphoribosylamine-- 78.7 42 0.00091 33.5 12.9 129 97-258 93-248 (379)
37 PRK02186 argininosuccinate lya 77.2 66 0.0014 36.0 15.1 133 97-259 133-276 (887)
38 PRK14016 cyanophycin synthetas 75.8 11 0.00024 41.2 8.4 79 97-205 240-318 (727)
39 PRK07206 hypothetical protein; 74.0 87 0.0019 31.1 13.7 141 96-260 133-288 (416)
40 PRK12767 carbamoyl phosphate s 73.8 58 0.0013 31.0 12.0 118 103-259 145-269 (326)
41 PF14398 ATPgrasp_YheCD: YheC/ 73.0 7.5 0.00016 37.0 5.6 44 216-259 184-232 (262)
42 TIGR02712 urea_carbox urea car 72.0 74 0.0016 37.1 14.1 138 98-260 142-292 (1201)
43 PRK13789 phosphoribosylamine-- 70.2 92 0.002 31.8 13.1 152 98-275 135-316 (426)
44 PRK09288 purT phosphoribosylgl 68.4 1.1E+02 0.0023 30.2 12.9 134 97-260 140-285 (395)
45 TIGR01369 CPSaseII_lrg carbamo 66.2 1E+02 0.0022 35.3 13.5 139 98-265 696-846 (1050)
46 PRK08654 pyruvate carboxylase 65.9 1.8E+02 0.0038 30.5 16.1 141 97-263 143-295 (499)
47 PLN02948 phosphoribosylaminoim 64.7 2E+02 0.0044 30.7 14.7 136 96-264 146-294 (577)
48 PRK14568 vanB D-alanine--D-lac 64.4 19 0.0004 35.4 6.5 132 103-268 162-318 (343)
49 PRK05294 carB carbamoyl phosph 63.7 1.1E+02 0.0023 35.1 13.2 139 98-265 696-846 (1066)
50 PRK02471 bifunctional glutamat 62.0 49 0.0011 36.5 9.8 146 98-275 515-686 (752)
51 PRK12458 glutathione synthetas 62.0 1E+02 0.0022 30.5 11.2 80 96-202 151-237 (338)
52 PLN02735 carbamoyl-phosphate s 61.1 96 0.0021 35.8 12.2 139 98-266 729-882 (1102)
53 KOG3530 FERM domain protein EH 56.5 15 0.00033 39.2 4.5 82 209-292 156-257 (616)
54 TIGR03103 trio_acet_GNAT GNAT- 52.9 61 0.0013 34.3 8.4 77 97-204 323-399 (547)
55 PRK05294 carB carbamoyl phosph 49.2 3.9E+02 0.0084 30.7 14.5 139 97-263 154-307 (1066)
56 PF03133 TTL: Tubulin-tyrosine 46.8 18 0.00039 34.4 3.0 22 239-260 239-260 (292)
57 COG0189 RimK Glutathione synth 45.8 2.6E+02 0.0057 27.5 11.1 136 101-266 150-294 (318)
58 PRK12815 carB carbamoyl phosph 44.4 5.5E+02 0.012 29.6 15.0 138 97-264 154-307 (1068)
59 TIGR01380 glut_syn glutathione 40.0 3.6E+02 0.0077 26.1 12.2 129 96-261 144-286 (312)
60 PF14332 DUF4388: Domain of un 38.1 1.3E+02 0.0027 23.7 6.3 48 128-202 2-49 (103)
61 PF15632 ATPgrasp_Ter: ATP-gra 38.0 4.2E+02 0.0091 26.4 12.9 140 96-259 132-280 (329)
62 PRK05246 glutathione synthetas 34.7 2.7E+02 0.0058 26.9 9.1 127 96-260 145-286 (316)
63 PRK12815 carB carbamoyl phosph 32.8 7.5E+02 0.016 28.6 13.5 137 98-265 697-844 (1068)
64 COG1821 Predicted ATP-utilizin 32.8 69 0.0015 31.3 4.5 43 233-278 229-276 (307)
65 COG1181 DdlA D-alanine-D-alani 31.8 1.3E+02 0.0028 29.7 6.5 54 214-268 239-294 (317)
66 PF02786 CPSase_L_D2: Carbamoy 30.8 4.3E+02 0.0093 24.3 11.1 146 98-266 30-186 (211)
67 TIGR02291 rimK_rel_E_lig alpha 30.3 2.9E+02 0.0062 27.4 8.6 43 220-263 231-273 (317)
68 PRK13277 5-formaminoimidazole- 29.6 1.3E+02 0.0027 30.7 6.0 25 236-260 295-319 (366)
69 TIGR00877 purD phosphoribosyla 27.3 6.3E+02 0.014 25.1 13.6 136 97-260 130-290 (423)
70 PHA02552 4 head completion pro 24.5 49 0.0011 29.5 1.8 55 238-292 64-140 (151)
71 PRK15364 pathogenicity island 24.2 49 0.0011 30.5 1.8 20 29-50 95-114 (196)
72 PF03776 MinE: Septum formatio 23.9 3.3E+02 0.0072 20.8 6.3 54 195-257 10-65 (70)
73 PF05215 Spiralin: Spiralin; 23.9 1.8E+02 0.0038 27.2 5.3 46 215-261 53-101 (239)
74 TIGR01435 glu_cys_lig_rel glut 22.5 75 0.0016 35.1 3.2 97 171-275 552-672 (737)
75 PF02006 DUF137: Protein of un 20.9 88 0.0019 28.6 2.7 27 236-262 85-124 (178)
76 TIGR01557 myb_SHAQKYF myb-like 20.9 85 0.0018 23.2 2.2 24 92-120 8-31 (57)
No 1
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.9e-101 Score=715.29 Aligned_cols=320 Identities=48% Similarity=0.848 Sum_probs=289.3
Q ss_pred CCHHHHhhccccccchhccCCCccceeecCCHhHHHHHhcCCCCeEcCCCCCCCCCCCcCCCCCCCccccccCCCCCCCC
Q 019606 4 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDEA 83 (338)
Q Consensus 4 ~~~~~v~~C~~~~WY~~fk~~t~ks~ii~Lp~~fl~YL~sDg~~i~LP~~~~~~~~~~~~~~~~~~~~d~~~~e~~d~e~ 83 (338)
||++||++||||+|||.||++|||++++|||+.|++||..|| |.||.+..+.++++.+++..++++ +++||+++ +.
T Consensus 1 mkk~qV~hCqfs~Wy~lfrklt~Ks~vl~lP~~fi~YL~dDg--i~lpq~~n~~~~~~e~v~~~E~~d-d~qwedde-dt 76 (334)
T KOG2983|consen 1 MKKDQVLHCQFSNWYPLFRKLTIKSKVLPLPESFINYLIDDG--ILLPQSVNNEDAMPEEVHNFEEED-DSQWEDDE-DT 76 (334)
T ss_pred CchhhhhheeeehhhhhhccccccceEeeCcHHHHHHhHhcc--eeccccCCCCccCccccccccccc-cccccccc-cc
Confidence 799999999999999999999999999999999999999999 999999888778888877655544 55664332 23
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCC
Q 019606 84 EPSSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKT 163 (338)
Q Consensus 84 ~~~~~~~Fpel~~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~ 163 (338)
.+...|+||||+++|++||++|||+|+|||||||||||.||++|+||+|++++||+||||||++|+|||.+||++|.|..
T Consensus 77 at~~~pe~~El~qki~eaineLGgaV~PKLNWSaPrDA~WI~pn~slkCt~~nei~LLfksSdfithDl~~af~~C~D~d 156 (334)
T KOG2983|consen 77 ATLNRPEFPELEQKIREAINELGGAVIPKLNWSAPRDAAWISPNQSLKCTTFNEIALLFKSSDFITHDLFNAFDSCSDKD 156 (334)
T ss_pred ccccccchHHHHHHHHHHHHHccceecccccCCCCCcceeeccCCCcccccHHHHHHHHhcchHHHHHHhhhhcccccCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCceEEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhccHHHHHHHHHHHHHHHhhhhcCCCCceEEE
Q 019606 164 LTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDV 243 (338)
Q Consensus 164 ~~~~~~~~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DV 243 (338)
..++..++||||||+ .|+|++||||||++++|||||||+.++||++|.++++.++..|.+||.++|..+||..+|||||
T Consensus 157 s~~~~sfeLvLrkWc-~l~p~~EFRcFVKsn~lvg~~QRd~tnyYd~l~e~kd~~k~lI~eff~d~i~~kF~dedfvfDV 235 (334)
T KOG2983|consen 157 SSDPESFELVLRKWC-PLKPEMEFRCFVKSNELVGICQRDVTNYYDVLLEEKDLLKGLIEEFFKDKILFKFPDEDFVFDV 235 (334)
T ss_pred CCCcceehhhHhhhc-CCCcCceEEEEEeccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCeeEEE
Confidence 657789999999999 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEEEecCCCCCcCCCccchHHHhhhcCCCC--CcceEEEecCC----CccCCCCCCCcchhhhhcCCCC-CH
Q 019606 244 YVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEG--DDVEFRIVESQ----CAVRPGLKTAVPYDYLDTKPGS-GW 316 (338)
Q Consensus 244 yi~~~~~v~LID~NPf~~~Td~lLFsW~el~~~~~~~~--~~~efR~v~~~----~~~~~~~~~~vP~D~vd~s~g~-~~ 316 (338)
||++.+||||||||||+++||+|||+|+||..+....+ .++|+|+|+.+ .+..+|+.|+||.|+|++|.|+ +.
T Consensus 236 Yi~k~~kv~lID~Npf~~~TdsLlftWeEl~si~~~e~D~ed~elrlv~~~s~~sv~~~~y~~n~vP~D~vdaS~g~e~~ 315 (334)
T KOG2983|consen 236 YITKERKVWLIDFNPFCGSTDSLLFTWEELESINGPENDVEDYELRLVPRHSRLSVLPGEYLKNRVPYDYVDASAGSEQV 315 (334)
T ss_pred EecCCCcEEEEeccCccCccccceeeHHHHHhhcCCcccccchhheecccCCccccccchhhhccCCHHHHhhccCHHHH
Confidence 99999999999999999999999999999999876333 56799999855 3455678999999999999994 46
Q ss_pred HHHHHHHHHHHH
Q 019606 317 DQFFRNADDELQ 328 (338)
Q Consensus 317 ~~~~~~~~~~~~ 328 (338)
-++.++.++-..
T Consensus 316 ~kl~qk~k~~~n 327 (334)
T KOG2983|consen 316 LKLVQKWKQKDN 327 (334)
T ss_pred HHHHHHHHHHhc
Confidence 666666655544
No 2
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=100.00 E-value=1.4e-91 Score=673.43 Aligned_cols=288 Identities=47% Similarity=0.868 Sum_probs=255.3
Q ss_pred cchhccCCCccceeecCCHhHHHHHhcCCCCeEcCCCCCCCCCCCcCCCCCCCccccccCCCCCC-CCC-CCCCCCchhH
Q 019606 17 WYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGD-EAE-PSSPPSFPEL 94 (338)
Q Consensus 17 WY~~fk~~t~ks~ii~Lp~~fl~YL~sDg~~i~LP~~~~~~~~~~~~~~~~~~~~d~~~~e~~d~-e~~-~~~~~~Fpel 94 (338)
|||+||++|||++|||||++||+||.+|| |+||.+...... ....+++++++|++.+| +.+ ..+.++||+|
T Consensus 1 WYp~f~~~t~ks~ii~Lp~~fi~YL~~D~--i~lP~~~~~~~~-----~~~~~~~~~sd~~~~~d~e~~~~~~~~~fp~l 73 (299)
T PF07065_consen 1 WYPLFKSHTIKSKIIPLPEEFIEYLLSDG--IVLPEESDPSPS-----SSDDSDNEYSDWEDDSDDEEEDEFPSPSFPEL 73 (299)
T ss_pred CcchhhccCcceEEEeCCHHHHHHHHcCC--eECCCCCCcccc-----CCCCcccccccccccccccccccccccCcHHH
Confidence 99999999999999999999999999999 999987654211 12233444666643322 222 2688999999
Q ss_pred HHHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCC-CCCCCCceEEE
Q 019606 95 ELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDK-TLTRPPSFFLA 173 (338)
Q Consensus 95 ~~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~-~~~~~~~~~Lv 173 (338)
+++|++||++|||+|||||||||||||+||++++||+|+|++|||||||||+||+|||.++|+.|.+. ......+++||
T Consensus 74 ~~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~Lv 153 (299)
T PF07065_consen 74 HQEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELV 153 (299)
T ss_pred HHHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999873 22344589999
Q ss_pred EeccCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhccHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCC-CcEE
Q 019606 174 LRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKD-ERVK 252 (338)
Q Consensus 174 LrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~~-~~v~ 252 (338)
||||+ +|+|++|||||||+|+|+|||||++ +||++|++.+++|+++|.+||.++|+++|+..+||||||++++ ++|+
T Consensus 154 Lrkw~-~l~p~~EFRcFV~~~~LiaISQr~~-~~~~~L~~~~~~I~~~I~~F~~~~I~~~~~~~~~v~DVyi~~~~~~v~ 231 (299)
T PF07065_consen 154 LRKWV-NLNPSMEFRCFVRNRKLIAISQRDL-NYYDFLEELKEEIRSKIQEFFEEHIKPKFPLDNYVFDVYITRDKDKVW 231 (299)
T ss_pred Eeccc-cCCccceEEEEEECCEEEEEecccc-cccHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEEEEcCCCCeEE
Confidence 99999 9999999999999999999999999 9999999999999999999999999999999999999999988 9999
Q ss_pred EEEecCCCCCcCCCccchHHHhhhcCC---CCCcceEEEe--cCCCcc--CCCCCCCcchhhhhcCCC
Q 019606 253 ILDFNPWGAFTLPLLFAWEELQQNVGE---EGDDVEFRIV--ESQCAV--RPGLKTAVPYDYLDTKPG 313 (338)
Q Consensus 253 LID~NPf~~~Td~lLFsW~el~~~~~~---~~~~~efR~v--~~~~~~--~~~~~~~vP~D~vd~s~g 313 (338)
||||||||++||||||+|+||..+..+ .+..++||+| ++..++ +++++|+||.||+++|+|
T Consensus 232 LID~NPf~~~Td~lLFtW~EL~~~~~~~~~~~~~~efR~v~~~~~~~~~~~~~~~~~vP~d~v~~s~~ 299 (299)
T PF07065_consen 232 LIDFNPFGPRTDPLLFTWEELEELLEDSEEENTDPEFRLVTEPNEGGIQPKEYSENRVPKDVVDASQG 299 (299)
T ss_pred EEEecCCcccCccccccHHHHhhhcccccccCCCceEEEecccccccccCCcccCCCCCHHHHhhhcC
Confidence 999999999999999999999998753 4678999999 444444 457889999999999987
No 3
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=98.14 E-value=1.1e-05 Score=69.48 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=57.5
Q ss_pred ceEEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhccHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCC
Q 019606 169 SFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKD 248 (338)
Q Consensus 169 ~~~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~~ 248 (338)
...+.+.++. +-..|+||||.+|+++++|+|.-. ..... ..++.....+++... .-+..-||+||-+.++
T Consensus 35 ~~~V~vSe~v---~~~~E~R~fi~~g~vv~~s~Y~~~-~~~~~---~~~~~~~~~~~~~~~---~~~p~~~vlDvg~~~~ 104 (130)
T PF14243_consen 35 DTPVLVSEVV---EIESEWRCFIVDGEVVTGSPYRGD-WDLEP---DPDVVAFAIQALAAA---WTLPPAYVLDVGVTDD 104 (130)
T ss_pred CceEEEeceE---eeeeeEEEEEECCEEEEEeecCCC-cccCC---CHHHHHHHHHHHHhc---ccCCCeEEEEEEEeCC
Confidence 3556667666 567899999999999999999653 22222 123333333333311 4556789999999998
Q ss_pred CcEEEEEecCCC
Q 019606 249 ERVKILDFNPWG 260 (338)
Q Consensus 249 ~~v~LID~NPf~ 260 (338)
++-.|||+|+..
T Consensus 105 G~~~lVE~N~~~ 116 (130)
T PF14243_consen 105 GGWALVEANDGW 116 (130)
T ss_pred CCEEEEEecCcc
Confidence 899999999976
No 4
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=96.84 E-value=0.015 Score=53.95 Aligned_cols=138 Identities=16% Similarity=0.139 Sum_probs=82.6
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.+.++++|..++.|-...+-. .+..++++.+++..+++.- ..... ..-..++-+
T Consensus 114 ~~~~~~~~~~~p~vvKP~~g~~g-------~gv~~i~~~~~l~~~~~~~-----------~~~~~------~~~~~lvQe 169 (277)
T TIGR00768 114 EALKLIEEIGFPVVLKPVFGSWG-------RLVSLARDKQAAETLLEHF-----------EQLNG------PQNLFYVQE 169 (277)
T ss_pred HHHHHHHhcCCCEEEEECcCCCC-------CceEEEcCHHHHHHHHHHH-----------HHhcc------cCCcEEEEe
Confidence 35677788888899997665422 3456788888765544321 11100 012357888
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeCCccc-cchhhhc----cHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCCCcE
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQREVTM-CYPALSE----KKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERV 251 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr~~~~-~y~~L~~----~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~~~~v 251 (338)
|. +-....++||+|-+++++++-.|.... +...... ....+...+.++.. .+...+...-+.||+.+++++++
T Consensus 170 ~I-~~~~~~~~rv~v~~~~~~~~~~r~~~~~~~~n~~~g~~~~~~~l~~~~~~~a~-~~~~~l~~~~~~vD~~~~~~g~~ 247 (277)
T TIGR00768 170 YI-KKPGGRDIRVFVVGDEVIAAIYRITSGHWRTNLARGGKAEPCPLTEEIEELAI-KAAKALGLDVVGIDLLESEDRGL 247 (277)
T ss_pred ee-cCCCCceEEEEEECCEEEEEEEEcCCCchhhhhhcCCeeeecCCCHHHHHHHH-HHHHHhCCCeEEEEEEEcCCCCe
Confidence 88 433347999999999999987763111 1111100 00011223333333 23345556567899999988899
Q ss_pred EEEEecCCC
Q 019606 252 KILDFNPWG 260 (338)
Q Consensus 252 ~LID~NPf~ 260 (338)
+++|+||..
T Consensus 248 ~viEiN~~p 256 (277)
T TIGR00768 248 LVNEVNPNP 256 (277)
T ss_pred EEEEEcCCc
Confidence 999999964
No 5
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=96.77 E-value=0.015 Score=52.23 Aligned_cols=135 Identities=20% Similarity=0.171 Sum_probs=68.8
Q ss_pred HHHHHHHHHh-CCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEE
Q 019606 96 LKIKESIESL-GGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLAL 174 (338)
Q Consensus 96 ~~I~~aI~~l-gG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvL 174 (338)
+.+.+.++++ |+.+..|-+.++-..+. .+|++..++..+|...... ...+++
T Consensus 28 ~~~~~~~~~~~~~p~ViKp~~g~~G~gV-------~~i~~~~~~~~~l~~~~~~--------------------~~~~~~ 80 (190)
T PF08443_consen 28 EEAKEFIEELGGFPVVIKPLRGSSGRGV-------FLINSPDELESLLDAFKRL--------------------ENPILV 80 (190)
T ss_dssp HHHHHHHHHH--SSEEEE-SB--------------EEEESHCHHHHHHH-------------------------TTT-EE
T ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCEE-------EEecCHHHHHHHHHHHHhc--------------------cCcceE
Confidence 3577788888 67799998776654433 5677777776655432110 112377
Q ss_pred eccCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhcc-------HHHHHHHHHHHHHHHhhhhcCCCCceEEEEecC
Q 019606 175 RKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEK-------KNDIKVLIQELFDSNVRQEFESENYTFDVYVTK 247 (338)
Q Consensus 175 rkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~~-------~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~ 247 (338)
-+|. .-...+++|++|-+++++|.-.|.... -+|..+. .-.+-..+.++.. ++...+...-+-+|+. ..
T Consensus 81 Q~fI-~~~~g~d~Rv~Vig~~vv~a~~r~~~~-~d~r~n~~~g~~~~~~~l~~e~~~~a~-~~~~~lgl~~~giDi~-~~ 156 (190)
T PF08443_consen 81 QEFI-PKDGGRDLRVYVIGGKVVGAYRRSSPE-GDFRTNLSRGGKVEPYDLPEEIKELAL-KAARALGLDFAGIDIL-DT 156 (190)
T ss_dssp EE-----SS---EEEEEETTEEEEEEE-------------------EE----HHHHHHHH-HHHHHTT-SEEEEEEE-EE
T ss_pred eccc-cCCCCcEEEEEEECCEEEEEEEEecCc-ccchhhhccCceEEEecCCHHHHHHHH-HHHHHhCCCEEEEEEE-ec
Confidence 8887 433348999999999999977776422 2222221 1224444555544 4556788888899965 44
Q ss_pred CCcEEEEEecCCCC
Q 019606 248 DERVKILDFNPWGA 261 (338)
Q Consensus 248 ~~~v~LID~NPf~~ 261 (338)
+++.+++|+||.+.
T Consensus 157 ~~~~~v~EvN~~~~ 170 (190)
T PF08443_consen 157 NDGPYVLEVNPNPG 170 (190)
T ss_dssp TTEEEEEEEETT--
T ss_pred CCCeEEEEecCCch
Confidence 56899999999885
No 6
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=96.17 E-value=0.094 Score=49.96 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=84.9
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+...++++|..++.|-...+-.- +..+|.+.+|+...++... .+ ...+++-+|
T Consensus 125 ~~~~~~~~~~P~ivKP~~g~~s~-------Gv~~v~~~~el~~~~~~~~--------~~------------~~~~lvEe~ 177 (304)
T PRK01372 125 LLAAIDKLGLPLVVKPAREGSSV-------GVSKVKEEDELQAALELAF--------KY------------DDEVLVEKY 177 (304)
T ss_pred HHHHHhhcCCCEEEeeCCCCCCC-------CEEEeCCHHHHHHHHHHHH--------hc------------CCcEEEEcc
Confidence 45667888888999988765332 3457888888765443220 01 123566777
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeeCCcc-ccchhh-----------h--ccHHHHHHHHHHHHHHHhhhhcCCCCce-EE
Q 019606 178 YPSLRPEMEFRCFVRGRCLVGISQREVT-MCYPAL-----------S--EKKNDIKVLIQELFDSNVRQEFESENYT-FD 242 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~~~~LiaISQr~~~-~~y~~L-----------~--~~~~~i~~~I~~F~~~~i~~~~~~~~yv-~D 242 (338)
. . ..||+|.|-+++.+++..+... .+|++- . ....++...|.++.. ++...+....|+ +|
T Consensus 178 i-~---G~E~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~-~~~~~lg~~g~~~iD 252 (304)
T PRK01372 178 I-K---GRELTVAVLGGKALPVIEIVPAGEFYDYEAKYLAGGTQYICPAGLPAEIEAELQELAL-KAYRALGCRGWGRVD 252 (304)
T ss_pred c-C---CEEEEEEEECCCccceEEEEecCCEEeeeccccCCCeEEEeCCCCCHHHHHHHHHHHH-HHHHHhCCcceEEEE
Confidence 6 3 7999999998877665443221 111110 0 122345555555544 344466666665 99
Q ss_pred EEecCCCcEEEEEecCCCCCcCCCc
Q 019606 243 VYVTKDERVKILDFNPWGAFTLPLL 267 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~~Td~lL 267 (338)
+.++.+++++++|+||--..+.+.+
T Consensus 253 ~~~~~~g~~~viEvN~~p~~~~~~~ 277 (304)
T PRK01372 253 FMLDEDGKPYLLEVNTQPGMTSHSL 277 (304)
T ss_pred EEEcCCCCEEEEEecCCCCCCcccH
Confidence 9999888999999999654444333
No 7
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=96.14 E-value=0.13 Score=48.32 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=82.8
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..++.|-..++-. .+..++.+.+++..+++.-.. +.. .....+++-+
T Consensus 113 ~~~~~~~~~~~P~vvKP~~g~~g-------~gv~~v~~~~~l~~~~~~~~~--------~~~--------~~~~~~ivQe 169 (280)
T TIGR02144 113 AALKLAEALGYPVVLKPVIGSWG-------RLVALIRDKDELESLLEHKEV--------LGG--------SQHKLFYIQE 169 (280)
T ss_pred HHHHHHHHcCCCEEEEECcCCCc-------CCEEEECCHHHHHHHHHHHHh--------hcC--------CcCCeEEEEc
Confidence 35556778887899997765432 245667887776655432111 100 0123578888
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhc--c--HHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCCCcEE
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSE--K--KNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVK 252 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~--~--~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~~~~v~ 252 (338)
|.+ .+..|+||+|-+++.++.-.|....+...... . .-.+-..+.++.. ++...+...-+-+|+.++.++..+
T Consensus 170 fI~--~~~~d~~v~vig~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~a~-~~~~~lg~~~~~vD~~~~~~g~~~ 246 (280)
T TIGR02144 170 YIN--KPGRDIRVFVIGDEAIAAIYRYSNHWRTNTARGGKAEPCPLDEEVEELAV-KAAEAVGGGVVAIDIFESKERGLL 246 (280)
T ss_pred ccC--CCCCceEEEEECCEEEEEEEEcCCchhhhhhcCCceeccCCCHHHHHHHH-HHHHHhCCCeEEEEEEEcCCCCEE
Confidence 983 46799999999999876555543111111100 0 0011222334433 233455555667999998777899
Q ss_pred EEEecCCCCCc
Q 019606 253 ILDFNPWGAFT 263 (338)
Q Consensus 253 LID~NPf~~~T 263 (338)
++|+||..+.+
T Consensus 247 v~EvN~~p~~~ 257 (280)
T TIGR02144 247 VNEVNHVPEFK 257 (280)
T ss_pred EEEEeCCcchh
Confidence 99999976443
No 8
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=95.24 E-value=0.12 Score=44.67 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=81.5
Q ss_pred HHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 96 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
+.+.+.+..+|+.++.|-.+++-.. +...|++.+|+...+..-..-.+ . ....+++-
T Consensus 29 ~~~~~~~~~~~~p~vvKp~~g~gs~-------gv~~~~~~~~l~~~~~~~~~~~~--------~--------~~~~~ivq 85 (184)
T PF13535_consen 29 EELRAFAEDLGFPFVVKPVDGSGSR-------GVFIVHSPEELEAALAEIREDSP--------L--------GNGPVIVQ 85 (184)
T ss_dssp HHHHHHHHHSSSSEEEEESS-STTT-------T-EEESSHHHHHHHHHHHHHHHS-----------------HSSSEEEE
T ss_pred HHHHHHHHHcCCCEEEEcCccccCC-------CEEEeCCHHHHHHHHHHHHHhcc--------c--------CCccEEEE
Confidence 4588888999999999998886644 44568899998877543222110 0 12356778
Q ss_pred ccCCCCCCCceEEEEEeCCeEEEE--eeCCccccch-----hhh-------ccHHHHHHHHHHHHHHHhhhhcCCCCceE
Q 019606 176 KWYPSLRPEMEFRCFVRGRCLVGI--SQREVTMCYP-----ALS-------EKKNDIKVLIQELFDSNVRQEFESENYTF 241 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~~~~LiaI--SQr~~~~~y~-----~L~-------~~~~~i~~~I~~F~~~~i~~~~~~~~yv~ 241 (338)
+|. . -.....++++.+|+++++ +++....... .+. ...+++++...+++.. + -++..-+-+
T Consensus 86 e~i-~-g~e~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--g~~~G~~~i 160 (184)
T PF13535_consen 86 EYI-P-GDEYSVDGVVDDGEVVFAGISRYVRQSPGHFSGGVPTGYSVPSEPPLPEELRDLARKLLRA-L--GYRNGFFHI 160 (184)
T ss_dssp E-----SEEEEEEEEEETTEEEEEEEEEEEEEETCCCSSSEEEEEEES--CEHHHHHHHHHHHHHHH-H--T--SEEEEE
T ss_pred Eee-e-eeeEEEEEEEEcceEEEEEEEEEecccccccccceeeeeecccccccHHHHHHHHHHHHHH-c--CCceEEEEE
Confidence 887 3 355666778889998554 3333321111 111 1125566666555542 1 233456688
Q ss_pred EEEecCCCcEEEEEecC
Q 019606 242 DVYVTKDERVKILDFNP 258 (338)
Q Consensus 242 DVyi~~~~~v~LID~NP 258 (338)
|+.++.++++++||+||
T Consensus 161 d~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 161 DFIVDPDGELYFIEINP 177 (184)
T ss_dssp EEEEETCCEEEEEEEES
T ss_pred EEEEeCCCCEEEEEECc
Confidence 99999888899999999
No 9
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=94.48 E-value=1.1 Score=42.89 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=77.3
Q ss_pred HHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCC
Q 019606 100 ESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYP 179 (338)
Q Consensus 100 ~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~ 179 (338)
.+.+.+|..++.|-...+-.- +..+|++.+++...++.. +. ....+++-+|.
T Consensus 140 ~~~~~~~~P~vvKP~~~~~s~-------Gv~~v~~~~el~~~~~~~----------~~----------~~~~~lvEe~i- 191 (315)
T TIGR01205 140 QVAEPLGFPVIVKPAREGSSV-------GVSKVKSEEELQAALDEA----------FE----------YDEEVLVEQFI- 191 (315)
T ss_pred HHHHhcCCCEEEEeCCCCCcc-------CEEEECCHHHHHHHHHHH----------Hh----------cCCcEEEEcCC-
Confidence 344678889999976654222 345788888877655321 10 01235667665
Q ss_pred CCCCCceEEEEEeC-CeEEEEeeCCcc--ccchhh-------------hccHHHHHHHHHHHHHHHhhhhcCCCCc-eEE
Q 019606 180 SLRPEMEFRCFVRG-RCLVGISQREVT--MCYPAL-------------SEKKNDIKVLIQELFDSNVRQEFESENY-TFD 242 (338)
Q Consensus 180 ~i~ps~EFRcFV~~-~~LiaISQr~~~--~~y~~L-------------~~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~D 242 (338)
+..||+|.|-. ++.+.+.+.... .+|++- ....+++...|.+... ++...+...+| -+|
T Consensus 192 ---~G~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~-~~~~~lg~~G~~~vD 267 (315)
T TIGR01205 192 ---KGRELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELAL-KAYKALGCRGLARVD 267 (315)
T ss_pred ---CCEEEEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHH-HHHHHhCCCceEEEE
Confidence 48999999876 543333221110 011110 0123455556666655 34445665554 699
Q ss_pred EEecCCCcEEEEEecCCCCCc
Q 019606 243 VYVTKDERVKILDFNPWGAFT 263 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~~T 263 (338)
+.++++++++++|+||-.+.+
T Consensus 268 ~~~~~~g~~~viEvN~~pg~~ 288 (315)
T TIGR01205 268 FFLDEEGEIYLNEINTIPGMT 288 (315)
T ss_pred EEEeCCCCEEEEEeeCCCCCC
Confidence 999877799999999975433
No 10
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=94.08 E-value=0.94 Score=43.48 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=77.7
Q ss_pred HHHHHHHHHhCC-eeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEE
Q 019606 96 LKIKESIESLGG-AVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLAL 174 (338)
Q Consensus 96 ~~I~~aI~~lgG-~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvL 174 (338)
..+.+++++++| .|+.|-...+-. .+-.+|++.++.-.++.. +... ...+++
T Consensus 124 ~~~~~~~~~~~~~P~VvKP~~g~~g-------~GV~~v~~~~~~~~~~~~-----------~~~~---------~~~~lv 176 (300)
T PRK10446 124 DDTSDLIDMVGGAPLVVKLVEGTQG-------IGVVLAETRQAAESVIDA-----------FRGL---------NAHILV 176 (300)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCc-------ccEEEEcCHHHHHHHHHH-----------HHhc---------CCCEEE
Confidence 346677777744 799996665322 233567776664332221 1111 123678
Q ss_pred eccCCCCCCCceEEEEEeCCeEEEEeeCCccc-cch-hhh----ccHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCC
Q 019606 175 RKWYPSLRPEMEFRCFVRGRCLVGISQREVTM-CYP-ALS----EKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKD 248 (338)
Q Consensus 175 rkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~-~y~-~L~----~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~~ 248 (338)
-+|. .-.+..|.||+|-+++.+++.+|.... .|. .+. .....+...+.+... .+...+...-.-+|+..+.+
T Consensus 177 Qe~I-~~~~g~d~rv~vig~~~~~~~~r~~~~~~~~~n~~~g~~~~~~~l~~~~~~~a~-~a~~alg~~~~gvD~~~~~~ 254 (300)
T PRK10446 177 QEYI-KEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAI-KAARTMALDVAGVDILRANR 254 (300)
T ss_pred Eeee-ccCCCceEEEEEECCEEEEEEEEecCCCchhheeccCCeeccCCCCHHHHHHHH-HHHHHhCCCEEEEEEEEcCC
Confidence 8888 444689999999999999887774321 111 000 000112233333333 23344565545699888765
Q ss_pred CcEEEEEecCCCC
Q 019606 249 ERVKILDFNPWGA 261 (338)
Q Consensus 249 ~~v~LID~NPf~~ 261 (338)
+ .+++|+|+..+
T Consensus 255 g-~~vlEvN~~pg 266 (300)
T PRK10446 255 G-PLVMEVNASPG 266 (300)
T ss_pred C-cEEEEEECCCC
Confidence 4 89999999654
No 11
>PRK05586 biotin carboxylase; Validated
Probab=93.89 E-value=1.7 Score=44.26 Aligned_cols=139 Identities=14% Similarity=0.166 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|-.|+.|=. ++. ...+...|++.+|+...+........ ..|. .-.+++-+
T Consensus 143 e~~~~~~~igyPvvvKP~-----~gg--gg~Gv~~v~~~~el~~a~~~~~~~~~---~~~~-----------~~~vivEe 201 (447)
T PRK05586 143 EALEIAKEIGYPVMVKAS-----AGG--GGRGIRIVRSEEELIKAFNTAKSEAK---AAFG-----------DDSMYIEK 201 (447)
T ss_pred HHHHHHHHcCCCEEEEEC-----CCC--CCCeeEEECCHHHHHHHHHHHHHHHH---HhcC-----------CCeEEEEe
Confidence 355677889988999943 333 11355689999997766543222111 1110 12356677
Q ss_pred cCCCCCCCceEEEEEe---CCeEEEEeeCCcccc--c-hhhh-----ccHHHHHHHHHHHHHHHhhhhcCCCCc-eEEEE
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVGISQREVTMC--Y-PALS-----EKKNDIKVLIQELFDSNVRQEFESENY-TFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~LiaISQr~~~~~--y-~~L~-----~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~DVy 244 (338)
|. . -..|+.+-|- +|+++.+..++++.+ + ..+. ...++++..+.+... ++...+...+. .+|+.
T Consensus 202 ~i-~--g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~-~i~~aLg~~g~~~vEf~ 277 (447)
T PRK05586 202 FI-E--NPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAV-KAAKAVNYKNAGTIEFL 277 (447)
T ss_pred cC-C--CCeEEEEEEEECCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHH-HHHHHcCCcceeEEEEE
Confidence 76 3 3366766442 378888876654211 1 0111 123456666666665 34455665554 49999
Q ss_pred ecCCCcEEEEEecCCC
Q 019606 245 VTKDERVKILDFNPWG 260 (338)
Q Consensus 245 i~~~~~v~LID~NPf~ 260 (338)
++++++++++|+||=-
T Consensus 278 ~~~~g~~~~iEvNpR~ 293 (447)
T PRK05586 278 LDKDGNFYFMEMNTRI 293 (447)
T ss_pred EcCCCCEEEEEEECCC
Confidence 9888889999999864
No 12
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=93.69 E-value=1.9 Score=42.18 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=84.5
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+...++.+|..++.|=+...-. -+..+|++.+|+...++. ++.. ...+++-+|
T Consensus 154 ~~~~~~~~~~P~vVKP~~~gsS-------~Gv~~v~~~~el~~a~~~----------~~~~----------~~~vlvEef 206 (333)
T PRK01966 154 LAEIEAKLGLPVFVKPANLGSS-------VGISKVKNEEELAAALDL----------AFEY----------DRKVLVEQG 206 (333)
T ss_pred HHHHHHhcCCCEEEEeCCCCCc-------cCEEEECCHHHHHHHHHH----------HHhc----------CCcEEEEcC
Confidence 4556677888899996654322 234678888887655543 1210 124567778
Q ss_pred CCCCCCCceEEEEEeCC--eEEEEeeCCc-cccchhhh-------------ccHHHHHHHHHHHHHHHhhhhcCCCCc-e
Q 019606 178 YPSLRPEMEFRCFVRGR--CLVGISQREV-TMCYPALS-------------EKKNDIKVLIQELFDSNVRQEFESENY-T 240 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~~~--~LiaISQr~~-~~~y~~L~-------------~~~~~i~~~I~~F~~~~i~~~~~~~~y-v 240 (338)
. . .+|++|-|-++ +...+.+... ..+|++-. ...+++.+.|++... ++...+....| -
T Consensus 207 I-~---G~E~~v~vl~~~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~-~~~~aLg~~G~~r 281 (333)
T PRK01966 207 I-K---GREIECAVLGNDPKASVPGEIVKPDDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAI-KAFKALGCSGLAR 281 (333)
T ss_pred c-C---CEEEEEEEECCCCeEcccEEEecCCceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHH-HHHHHhCCcceEE
Confidence 6 3 79999999863 3332222211 12333211 123456666776665 34445666665 4
Q ss_pred EEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 241 FDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 241 ~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+|+.++.+++++++|+||--+.|..-+|
T Consensus 282 vDf~~~~~g~~~vlEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 282 VDFFLTEDGEIYLNEINTMPGFTPISMY 309 (333)
T ss_pred EEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 9999988889999999998766654444
No 13
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=93.47 E-value=2.4 Score=43.76 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.+.++++|-.|+.|=. ++.. ..+...|++.+|+-..+......+.. .+. ...+++-+
T Consensus 143 ~~~~~~~~igyPvvvKP~-----~ggG--g~Gv~iv~~~~eL~~a~~~~~~~a~~---~~~-----------~~~vlvEe 201 (478)
T PRK08463 143 EIKIFARKIGYPVILKAS-----GGGG--GRGIRVVHKEEDLENAFESCKREALA---YFN-----------NDEVFMEK 201 (478)
T ss_pred HHHHHHHHhCCCEEEEeC-----CCCC--CCceEEeCCHHHHHHHHHHHHHHHHH---hcC-----------CCcEEEEe
Confidence 355667888888999943 3331 12446789999887666543221111 110 12457777
Q ss_pred cCCCCCCCceEEEEEeC-CeEEEEeeCCccccc--hhhh------ccHHHHHHHHHHHHHHHhhhhcCCCCc-eEEEEec
Q 019606 177 WYPSLRPEMEFRCFVRG-RCLVGISQREVTMCY--PALS------EKKNDIKVLIQELFDSNVRQEFESENY-TFDVYVT 246 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~-~~LiaISQr~~~~~y--~~L~------~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~DVyi~ 246 (338)
|. .-....|+-++..+ ++++++..|+++... ..+. ...++++.+|.+... .+...+...++ .+|+.++
T Consensus 202 fI-~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~-~~~~alg~~g~~~vEf~~~ 279 (478)
T PRK08463 202 YV-VNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAV-AAAKAVGYTNAGTIEFLLD 279 (478)
T ss_pred cC-CCCeEEEEEEEEcCCCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHH-HHHHHcCCCCceeEEEEEc
Confidence 87 33333466566543 788888877653321 1111 134566677776665 33345555444 5899998
Q ss_pred CCCcEEEEEecCCC
Q 019606 247 KDERVKILDFNPWG 260 (338)
Q Consensus 247 ~~~~v~LID~NPf~ 260 (338)
.+++++++|+||=.
T Consensus 280 ~~~~~y~iEiN~R~ 293 (478)
T PRK08463 280 DYNRFYFMEMNTRI 293 (478)
T ss_pred CCCCEEEEEEECCc
Confidence 77899999999854
No 14
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=93.36 E-value=2.4 Score=38.84 Aligned_cols=139 Identities=18% Similarity=0.205 Sum_probs=89.0
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
|.+.+..+|..+|+|=+...=.=+ --+|++.+|+--.++. ++.. ....|| -++
T Consensus 25 ~~~~~~~l~~P~~VKP~~~GsS~G-------i~~v~~~~el~~ai~~----------~~~~---------~~~vlV-Eef 77 (203)
T PF07478_consen 25 IEKILEDLGFPLFVKPASEGSSIG-------ISKVHNEEELEEAIEK----------AFKY---------DDDVLV-EEF 77 (203)
T ss_dssp HHHHHHHHSSSEEEEESSTSTTTT-------EEEESSHHHHHHHHHH----------HTTT---------HSEEEE-EE-
T ss_pred HHHHHhhcCCCEEEEECCCCccEE-------EEEcCCHHHHHHHHHH----------Hhhh---------cceEEE-Eee
Confidence 788889999999999775322111 2368888887554433 2210 012333 444
Q ss_pred CCCCCCCceEEEEEeC---CeEEEEeeCCcc-ccchhhhc---------------cHHHHHHHHHHHHHHHhhhhcCCCC
Q 019606 178 YPSLRPEMEFRCFVRG---RCLVGISQREVT-MCYPALSE---------------KKNDIKVLIQELFDSNVRQEFESEN 238 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~~---~~LiaISQr~~~-~~y~~L~~---------------~~~~i~~~I~~F~~~~i~~~~~~~~ 238 (338)
-+.+||.|-|-+ ..+..+.+.... .+|+|=.+ ....+.++|++... .+-..+...+
T Consensus 78 ----I~G~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i~~~a~-~a~~~lg~~~ 152 (203)
T PF07478_consen 78 ----ISGREFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPADLSEELQEKIKEIAK-KAFKALGCRG 152 (203)
T ss_dssp -----SSEEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHHHHHHH-HHHHHTTTCS
T ss_pred ----ecccceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCCCCHHHHHHHHHHHH-HHHHHHcCCC
Confidence 389999999987 566666654442 24443221 13567777777766 3445788888
Q ss_pred ce-EEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 239 YT-FDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 239 yv-~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
|. +|+-++.+++++++|+||.-+.|..-+|
T Consensus 153 ~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 153 YARIDFRVDEDGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp EEEEEEEEETTTEEEEEEEESS-G-STTSHH
T ss_pred ceeEEEEeccCCceEEEeccCcccccCCCHH
Confidence 85 9999998899999999999876665555
No 15
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=92.24 E-value=0.67 Score=44.59 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=78.9
Q ss_pred HHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCC
Q 019606 102 IESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSL 181 (338)
Q Consensus 102 I~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i 181 (338)
++.+|-.+|.|=+...-. -+..+|++.+|+...++.. +. .. .+++-+|.
T Consensus 126 ~~~~~~P~vVKP~~ggss-------~Gv~~v~~~~eL~~a~~~~----------~~----------~~-~~lvEefI--- 174 (296)
T PRK14569 126 EDEISFPVAVKPSSGGSS-------IATFKVKSIQELKHAYEEA----------SK----------YG-EVMIEQWV--- 174 (296)
T ss_pred HhhcCCCEEEEeCCCCCC-------cCeEEcCCHHHHHHHHHHH----------Hh----------cC-CEEEEccc---
Confidence 466777788887653221 1235788888876555321 10 01 24557776
Q ss_pred CCCceEEEEEeCCeEEEEeeCC-ccccchhhh------------ccHHHHHHHHHHHHHHHhhhhcCCCCce-EEEEecC
Q 019606 182 RPEMEFRCFVRGRCLVGISQRE-VTMCYPALS------------EKKNDIKVLIQELFDSNVRQEFESENYT-FDVYVTK 247 (338)
Q Consensus 182 ~ps~EFRcFV~~~~LiaISQr~-~~~~y~~L~------------~~~~~i~~~I~~F~~~~i~~~~~~~~yv-~DVyi~~ 247 (338)
+.+||+|.|-+++..+.-+.. ...+|++-. ...+++...|.+... .+...+...+|+ +|+.++.
T Consensus 175 -~G~E~tv~vl~~~~~~~~~i~~~~~~~~~~~k~~~~~~~~~P~~l~~~~~~~i~~~a~-~~~~~Lg~~G~~rvD~~~~~ 252 (296)
T PRK14569 175 -TGKEITVAIVNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPSGLCEQKELEVRQLAK-KAYDLLGCSGHARVDFIYDD 252 (296)
T ss_pred -ccEEEEEEEECCcCcceEEEecCCCcCChhhccCCCcEEEeCCCCCHHHHHHHHHHHH-HHHHHhCCceEEEEEEEEcC
Confidence 479999999876543211111 112333211 112445556666655 334456666664 9999988
Q ss_pred CCcEEEEEecCCCCCcCCCcc
Q 019606 248 DERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 248 ~~~v~LID~NPf~~~Td~lLF 268 (338)
+++++++|+||--+.|...+|
T Consensus 253 ~g~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 253 RGNFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred CCCEEEEEeeCCCCCCCcCHH
Confidence 889999999998776655554
No 16
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=91.86 E-value=5.8 Score=39.64 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=81.2
Q ss_pred HHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCCC
Q 019606 103 ESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLR 182 (338)
Q Consensus 103 ~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i~ 182 (338)
+.+|..||.|-+...=.- +..+|++.+|+-..++ .++.. ...+++-+|. .
T Consensus 168 ~~lg~PviVKP~~~GsS~-------Gv~~v~~~~el~~al~----------~a~~~----------~~~vlVEefI-~-- 217 (364)
T PRK14570 168 EVLGYPVIVKPAVLGSSI-------GINVAYNENQIEKCIE----------EAFKY----------DLTVVIEKFI-E-- 217 (364)
T ss_pred HhcCCCEEEEeCCCCCCC-------cEEEeCCHHHHHHHHH----------HHHhC----------CCCEEEECCc-C--
Confidence 578989999987633111 2346888888665544 22211 1235667776 3
Q ss_pred CCceEEEEEeCC---eEEEEeeCCc--cccchh----h------------hccHHHHHHHHHHHHHHHhhhhcCCCCce-
Q 019606 183 PEMEFRCFVRGR---CLVGISQREV--TMCYPA----L------------SEKKNDIKVLIQELFDSNVRQEFESENYT- 240 (338)
Q Consensus 183 ps~EFRcFV~~~---~LiaISQr~~--~~~y~~----L------------~~~~~~i~~~I~~F~~~~i~~~~~~~~yv- 240 (338)
.+|++|-|-++ .+..+.+... ..+|+| . ....+++.++|++... ++-..+...+|.
T Consensus 218 -GrEi~v~Vlg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~-~~~~aLg~~G~~R 295 (364)
T PRK14570 218 -AREIECSVIGNEQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAF-LTYKNLELRGMAR 295 (364)
T ss_pred -CEEEEEEEECCCCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH-HHHHHhCCcceEE
Confidence 79999999865 2222222111 023322 1 0123567777777766 455567777774
Q ss_pred EEEEecCC-CcEEEEEecCCCCCcCCCcc
Q 019606 241 FDVYVTKD-ERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 241 ~DVyi~~~-~~v~LID~NPf~~~Td~lLF 268 (338)
+|+.++.+ ++++++|+||.-+.|..-+|
T Consensus 296 vDf~l~~~~g~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 296 IDFLIEKDTGLIYLNEINTIPGFTDISMF 324 (364)
T ss_pred EEEEEECCCCcEEEEEeeCCCCCCcccHH
Confidence 99999864 88999999998775554333
No 17
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=90.77 E-value=7.3 Score=40.11 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=78.4
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++.+++|-.|+.|=...+- ..+...|++.+|+-..+..--. .....+. ...+++-+|
T Consensus 143 ~~~~~~~igyPvvvKp~~ggG-------g~Gv~~v~~~~eL~~a~~~~~~---~~~~~~~-----------~~~v~iE~~ 201 (472)
T PRK07178 143 ALAEAERIGYPVMLKATSGGG-------GRGIRRCNSREELEQNFPRVIS---EATKAFG-----------SAEVFLEKC 201 (472)
T ss_pred HHHHHHHcCCcEEEEeCCCCC-------CCCceEeCCHHHHHHHHHHHHH---HHHHhcC-----------CCCEEEEEc
Confidence 445668889899999544331 1345678998887665542111 0001110 123566777
Q ss_pred CCCCCCCceEEE--EE-eCCeEEEEeeCCcccc--chhhh------ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEEe
Q 019606 178 YPSLRPEMEFRC--FV-RGRCLVGISQREVTMC--YPALS------EKKNDIKVLIQELFDSNVRQEFESEN-YTFDVYV 245 (338)
Q Consensus 178 ~~~i~ps~EFRc--FV-~~~~LiaISQr~~~~~--y~~L~------~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVyi 245 (338)
. . ..+|+.+ +. .+|+++++.-|+++.. +..+. ...++++.+|.+... .+...+...+ ..+|+.+
T Consensus 202 i-~--~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~-~~~~aLg~~g~~~vEf~~ 277 (472)
T PRK07178 202 I-V--NPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAV-RAAKAVGYENAGTVEFLL 277 (472)
T ss_pred C-C--CCeEEEEEEEEECCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHH-HHHHHcCCCceeEEEEEE
Confidence 6 2 3444444 44 3577887755544221 11111 223556666666655 3344555444 3589999
Q ss_pred cCCCcEEEEEecCCCC
Q 019606 246 TKDERVKILDFNPWGA 261 (338)
Q Consensus 246 ~~~~~v~LID~NPf~~ 261 (338)
+.++++++||+||=..
T Consensus 278 d~~g~~y~iEiNpRl~ 293 (472)
T PRK07178 278 DADGEVYFMEMNTRVQ 293 (472)
T ss_pred eCCCCEEEEEEeCCcC
Confidence 8778999999998643
No 18
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=90.57 E-value=7.9 Score=39.15 Aligned_cols=140 Identities=11% Similarity=0.088 Sum_probs=79.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|-.|+.|=...+- ..+...|++.+|+-..+..... .....+ ....+++-+
T Consensus 143 ~~~~~~~~~g~PvvvKP~~g~g-------s~Gv~iv~~~~el~~~~~~~~~---~~~~~~-----------~~~~vlvEe 201 (451)
T PRK08591 143 EALAIAKEIGYPVIIKATAGGG-------GRGMRVVRTEAELEKAFSMARA---EAKAAF-----------GNPGVYMEK 201 (451)
T ss_pred HHHHHHHHcCCCEEEEECCCCC-------CceEEEECCHHHHHHHHHHHHH---HHHHhc-----------CCCCEEEEe
Confidence 3556677888889999554331 1244678898887666553211 110011 012467777
Q ss_pred cCCCCCCCceEEEEE-e--CCeEEEEeeCCcccc--chh-hh-----ccHHHHHHHHHHHHHHHhhhhcCCCCc-eEEEE
Q 019606 177 WYPSLRPEMEFRCFV-R--GRCLVGISQREVTMC--YPA-LS-----EKKNDIKVLIQELFDSNVRQEFESENY-TFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV-~--~~~LiaISQr~~~~~--y~~-L~-----~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~DVy 244 (338)
|. . ...|+-+-| . +++++++..++++.+ +.. +. ....+++..|.+... .+...+..... .+|+.
T Consensus 202 ~i-~--g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~-~~~~~lg~~G~~~vEf~ 277 (451)
T PRK08591 202 YL-E--NPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAV-KAAKAIGYRGAGTIEFL 277 (451)
T ss_pred CC-C--CCcEEEEEEEEcCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHH-HHHHHcCCCceEEEEEE
Confidence 86 2 345666533 3 357888766554211 111 10 123455566666554 33345554444 58999
Q ss_pred ecCCCcEEEEEecCCCC
Q 019606 245 VTKDERVKILDFNPWGA 261 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~ 261 (338)
++.+++++|||+||=..
T Consensus 278 ~~~~g~~~viEINpR~~ 294 (451)
T PRK08591 278 YEKNGEFYFIEMNTRIQ 294 (451)
T ss_pred EcCCCCEEEEEEECCCC
Confidence 98778999999999543
No 19
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=90.21 E-value=9.6 Score=38.73 Aligned_cols=140 Identities=10% Similarity=0.048 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 96 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
+++.++.+++|-.|+.|=...+ ...+...|++.+|+-..++........ .+ ....+++-
T Consensus 142 ~e~~~~~~~ig~PvvvKP~~g~-------gs~Gv~~v~~~~el~~~~~~~~~~~~~---~~-----------~~~~vlvE 200 (449)
T TIGR00514 142 EENVRIAKRIGYPVIIKATAGG-------GGRGMRVVREPDELVKSISMTRAEAKA---AF-----------GNDGVYIE 200 (449)
T ss_pred HHHHHHHHHhCCCEEEEeCCCC-------CCCccEEECCHHHHHHHHHHHHHHHHH---hC-----------CCCCEEEE
Confidence 3356667888988999954433 113557899999987776642211110 01 01245777
Q ss_pred ccCCCCCCCceEEEEE-e--CCeEEEEeeCCcccc--ch-hhh-----ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEE
Q 019606 176 KWYPSLRPEMEFRCFV-R--GRCLVGISQREVTMC--YP-ALS-----EKKNDIKVLIQELFDSNVRQEFESEN-YTFDV 243 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV-~--~~~LiaISQr~~~~~--y~-~L~-----~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DV 243 (338)
+|. . ...|+.+-| . +++++.+..++++.. +. .+. ...+++...|.+... .+...+.... +.+|+
T Consensus 201 e~i-~--g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~-~~~~~lg~~G~~~vef 276 (449)
T TIGR00514 201 KYI-E--NPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAV-KAAVSIGYRGAGTVEF 276 (449)
T ss_pred ECC-C--CCeEEEEEEEEcCCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHH-HHHHHCCCcceEEEEE
Confidence 776 2 245566533 2 367777765543211 10 110 123445555655554 2334454433 46899
Q ss_pred EecCCCcEEEEEecCCC
Q 019606 244 YVTKDERVKILDFNPWG 260 (338)
Q Consensus 244 yi~~~~~v~LID~NPf~ 260 (338)
.+++++++++||+||=-
T Consensus 277 ~~~~~g~~~viEiNpR~ 293 (449)
T TIGR00514 277 LLDKNGEFYFMEMNTRI 293 (449)
T ss_pred EEeCCCCEEEEEEECCC
Confidence 99877889999999854
No 20
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=89.69 E-value=11 Score=37.95 Aligned_cols=138 Identities=11% Similarity=0.028 Sum_probs=75.8
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|..|+.|=.-.+ . .-+...|++.+|+-..++.-..-.. ..+ ..-.+++-+|
T Consensus 144 ~~~~~~~~~~P~VvKP~~g~-----g--s~Gv~iv~~~~el~~a~~~~~~~~~---~~~-----------~~~~~lvEe~ 202 (450)
T PRK06111 144 AIAIARQIGYPVMLKASAGG-----G--GIGMQLVETEQELTKAFESNKKRAA---NFF-----------GNGEMYIEKY 202 (450)
T ss_pred HHHHHHHhCCCEEEEeCCCC-----C--CceEEEECCHHHHHHHHHHHHHHHH---Hhc-----------CCCcEEEEcc
Confidence 45667888988999954433 1 1245689999987766553110000 000 0124567778
Q ss_pred CCCCCCCceEEE--EE-eCCeEEEEeeCCcc--ccchhhh------ccHHHHHHHHHHHHHHHhhhhcCCCCce-EEEEe
Q 019606 178 YPSLRPEMEFRC--FV-RGRCLVGISQREVT--MCYPALS------EKKNDIKVLIQELFDSNVRQEFESENYT-FDVYV 245 (338)
Q Consensus 178 ~~~i~ps~EFRc--FV-~~~~LiaISQr~~~--~~y~~L~------~~~~~i~~~I~~F~~~~i~~~~~~~~yv-~DVyi 245 (338)
. .- ..|+.+ +. .+++.+++..+... .++..+. ...+.+...|.+.... +...+...++. +|+.+
T Consensus 203 i-~g--~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~-~~~~lg~~g~~~ve~~~ 278 (450)
T PRK06111 203 I-ED--PRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQ-AAKAIGYTNAGTIEFLV 278 (450)
T ss_pred c-CC--CcEEEEEEEEcCCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHH-HHHHcCCCCceeEEEEE
Confidence 7 32 345555 33 24666666433221 1111111 1123455555555542 33566666654 89999
Q ss_pred cCCCcEEEEEecCCC
Q 019606 246 TKDERVKILDFNPWG 260 (338)
Q Consensus 246 ~~~~~v~LID~NPf~ 260 (338)
+.+++++|||+||=.
T Consensus 279 ~~~g~~~viEiN~R~ 293 (450)
T PRK06111 279 DEQKNFYFLEMNTRL 293 (450)
T ss_pred cCCCCEEEEEEECCc
Confidence 877779999999954
No 21
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=89.45 E-value=10 Score=37.32 Aligned_cols=137 Identities=19% Similarity=0.183 Sum_probs=80.6
Q ss_pred HHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccC
Q 019606 99 KESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWY 178 (338)
Q Consensus 99 ~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~ 178 (338)
.++++++|-.||.|-+..+-. + +-.+|.+.+|+.-.++. ++.. + -.+++-+|.
T Consensus 164 ~~~~~~l~~PvvVKP~~ggsS----~---GV~~v~~~~el~~a~~~----------~~~~--~--------~~vlVEefI 216 (347)
T PRK14572 164 LLKLESLGFPQFLKPVEGGSS----V---STYKITNAEQLMTLLAL----------IFES--D--------SKVMSQSFL 216 (347)
T ss_pred HHHHHhcCCCEEEecCCCCCC----C---CEEEECCHHHHHHHHHH----------HHhc--C--------CCEEEEcCc
Confidence 345677888899997663222 1 23578888887655432 1210 0 124556665
Q ss_pred CCCCCCceEEEEEeC----Ce--EEEEe---eCCccccchhh-----------h--ccHHHHHHHHHHHHHHHhhhhcCC
Q 019606 179 PSLRPEMEFRCFVRG----RC--LVGIS---QREVTMCYPAL-----------S--EKKNDIKVLIQELFDSNVRQEFES 236 (338)
Q Consensus 179 ~~i~ps~EFRcFV~~----~~--LiaIS---Qr~~~~~y~~L-----------~--~~~~~i~~~I~~F~~~~i~~~~~~ 236 (338)
+.+||+|-|-+ ++ .+++. .+....+|+|= . ...+++.+.|.+... ++...+..
T Consensus 217 ----~G~E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~-~~~~~Lg~ 291 (347)
T PRK14572 217 ----SGTEVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAI-RAHESLGC 291 (347)
T ss_pred ----ccEEEEEEEEeCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHH-HHHHHhCC
Confidence 36999998773 33 22211 11112233321 0 123556667777665 45556776
Q ss_pred CCce-EEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 237 ENYT-FDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 237 ~~yv-~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
..|+ +|+.++ +++++++|+||-.+.|..-+|
T Consensus 292 ~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~ 323 (347)
T PRK14572 292 KGYSRTDFIIV-DGEPHILETNTLPGMTETSLI 323 (347)
T ss_pred cceeEEEEEEE-CCcEEEEeeeCCCCCCcccHH
Confidence 7674 999996 578999999998876655443
No 22
>PRK08462 biotin carboxylase; Validated
Probab=88.11 E-value=15 Score=37.08 Aligned_cols=140 Identities=11% Similarity=0.116 Sum_probs=79.2
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|=...+-. .+...|++.+|+-..+.....-. + ..+ ..-.+++-+
T Consensus 145 ~~~~~~~~~g~PvvvKP~~g~gs-------~Gv~~v~~~~eL~~~~~~~~~~~--~-~~~-----------~~~~vlvEe 203 (445)
T PRK08462 145 EAKKIAKEIGYPVILKAAAGGGG-------RGMRVVEDESDLENLYLAAESEA--L-SAF-----------GDGTMYMEK 203 (445)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCC-------CCeEEECCHHHHHHHHHHHHHHH--H-hcc-----------CCCcEEEec
Confidence 35566788998899995554311 24567899998876553321100 0 011 012467777
Q ss_pred cCCCCCCCceEEEEEe---CCeEEEEeeCCccc------cchhhh--ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEE
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVGISQREVTM------CYPALS--EKKNDIKVLIQELFDSNVRQEFESEN-YTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~LiaISQr~~~~------~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVy 244 (338)
|. ....|+.+.|- +++++.+.-++++. ++..-. ...+.++..|.+... .+...+.... ..+|+.
T Consensus 204 ~i---~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~-~~~~alg~~G~~~ve~~ 279 (445)
T PRK08462 204 FI---NNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAI-KAAKAIGYEGAGTFEFL 279 (445)
T ss_pred cC---CCCeEEEEEEEECCCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHH-HHHHHcCCCCcceEEEE
Confidence 86 33567777553 36777775443321 111100 122344555555544 3334455433 468999
Q ss_pred ecCCCcEEEEEecCCCC
Q 019606 245 VTKDERVKILDFNPWGA 261 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~ 261 (338)
++.++++++||+||=-.
T Consensus 280 ~~~~g~~~viEiNpR~~ 296 (445)
T PRK08462 280 LDSNLDFYFMEMNTRLQ 296 (445)
T ss_pred EeCCCCEEEEEEECCcC
Confidence 98777999999999543
No 23
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=86.63 E-value=2.8 Score=46.65 Aligned_cols=144 Identities=19% Similarity=0.140 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-.- +-++.+++.+++...++. ++.. ...+++.+
T Consensus 239 ea~~~~~~ig~PvVVKP~~g~~G~------GV~l~v~s~~el~~a~~~----------a~~~----------~~~vlVEe 292 (864)
T TIGR02068 239 DAWEAAQDLGYPVVIKPYDGNHGR------GVTINILTRDEIESAYEA----------AVEE----------SSGVIVER 292 (864)
T ss_pred HHHHHHHHcCCCEEEEECCCCCcc------CEEEEeCCHHHHHHHHHH----------HHhh----------CCcEEEEE
Confidence 456778899999999955432111 112346777766555432 1110 12356777
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhcc-HHHHHHHHHHH------------------HHHHhhhhcCCC
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEK-KNDIKVLIQEL------------------FDSNVRQEFESE 237 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~~-~~~i~~~I~~F------------------~~~~i~~~~~~~ 237 (338)
|. +..|||++|-+++++|+.+|-. +++... +..|++.|.+= +.+..+..+...
T Consensus 293 fI----~G~e~rvlVv~~~vvaa~~R~p----~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~ 364 (864)
T TIGR02068 293 FI----TGRDHRLLVVGGKVVAVAERVP----AHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQ 364 (864)
T ss_pred ec----cCCEEEEEEECCEEEEEEEecC----CceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHc
Confidence 76 4799999999999999999987 232222 23344433211 111222345567
Q ss_pred CceEEEEecCCCcEEEEEecCCC--C----CcCCCccchHHHh
Q 019606 238 NYTFDVYVTKDERVKILDFNPWG--A----FTLPLLFAWEELQ 274 (338)
Q Consensus 238 ~yv~DVyi~~~~~v~LID~NPf~--~----~Td~lLFsW~el~ 274 (338)
+|.+|=..+++.+|+|-.---.+ + .||-+-=++.++.
T Consensus 365 g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a 407 (864)
T TIGR02068 365 GLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATA 407 (864)
T ss_pred CCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHH
Confidence 78888766666666664432222 1 3555554555555
No 24
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.57 E-value=14 Score=40.78 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..+|.|=+-..=. -+..+|++.+|+-..++. ++.. + ..+++-+
T Consensus 601 ~~~~~~~~lg~P~iVKP~~~GsS-------~Gv~~v~~~~el~~a~~~----------a~~~--~--------~~vlVEe 653 (809)
T PRK14573 601 CLAHIVEAFSFPMFVKTAHLGSS-------IGVFEVHNVEELRDKISE----------AFLY--D--------TDVFVEE 653 (809)
T ss_pred HHHHHHHhcCCCEEEeeCCCCCC-------CCEEEECCHHHHHHHHHH----------HHhc--C--------CcEEEEe
Confidence 35566778888899986553221 133578888887655432 2210 1 1245556
Q ss_pred cCCCCCCCceEEEEEeCCe---E--EEEeeCCcc-ccchhhh----------------ccHHHHHHHHHHHHHHHhhhhc
Q 019606 177 WYPSLRPEMEFRCFVRGRC---L--VGISQREVT-MCYPALS----------------EKKNDIKVLIQELFDSNVRQEF 234 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~---L--iaISQr~~~-~~y~~L~----------------~~~~~i~~~I~~F~~~~i~~~~ 234 (338)
|. ...+||.|-|-++. + ..+.++... .||+|-. ...+++.++|++... ++-..+
T Consensus 654 ~i---~~grEi~v~vl~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~-~~~~aL 729 (809)
T PRK14573 654 SR---LGSREIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAE-RIYRLL 729 (809)
T ss_pred cc---CCCEEEEEEEEeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHH-HHHHHh
Confidence 65 45689999987432 1 122333221 2443311 123566777777765 444566
Q ss_pred CCCCc-eEEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 235 ESENY-TFDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 235 ~~~~y-v~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
...+| -+|+.++.+++++++|+||--+.|..-+|
T Consensus 730 g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 730 QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPF 764 (809)
T ss_pred CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 66666 49999988889999999998776664444
No 25
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=85.97 E-value=6.6 Score=39.01 Aligned_cols=87 Identities=17% Similarity=0.317 Sum_probs=56.0
Q ss_pred EEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCcc-ccc-------------hhhhcc---------------HH--HHH
Q 019606 171 FLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVT-MCY-------------PALSEK---------------KN--DIK 219 (338)
Q Consensus 171 ~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~-~~y-------------~~L~~~---------------~~--~i~ 219 (338)
-++|.+|. + +++.-|||||-++++ +.-+|.-. +.- +.+.+. .. ...
T Consensus 186 p~~lQEfV-n-h~g~d~RVfVvGd~v-~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~ 262 (328)
T PLN02941 186 PLVLQEFV-N-HGGVLFKVYVVGDYV-KCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPR 262 (328)
T ss_pred cEEEEEec-C-CCCEEEEEEEECCEE-EEEEecCCcccccccccccccccccccccccccccccccccccccccccCCCh
Confidence 48999998 4 569999999999997 54444321 111 111110 00 011
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEEecCC--CcEEEEEecCCCC
Q 019606 220 VLIQELFDSNVRQEFESENYTFDVYVTKD--ERVKILDFNPWGA 261 (338)
Q Consensus 220 ~~I~~F~~~~i~~~~~~~~yv~DVyi~~~--~~v~LID~NPf~~ 261 (338)
..+.+... .++..+...=|-|||..+.+ ++.++||+|-|-+
T Consensus 263 ~~l~~La~-~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~ 305 (328)
T PLN02941 263 PFLEDLAR-ELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPG 305 (328)
T ss_pred HHHHHHHH-HHHHHhCCceEEEEEEeecCCCCceEEEEecCCCc
Confidence 12333322 56678889999999999864 5899999999963
No 26
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=85.91 E-value=21 Score=34.99 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 96 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
+.+.++++++|..|+.|=. ++.. ..+..+|.+.+|+-..+..... . . ....-.+++-
T Consensus 126 ~~~~~~~~~~g~P~VvKP~-----~g~~--s~gv~~v~~~~el~~~~~~~~~----~--~----------~~~~~~~ivE 182 (380)
T TIGR01142 126 DELREAVEKIGYPCVVKPV-----MSSS--GKGQSVVRGPEDIEKAWEYAQE----G--A----------RGGAGRVIVE 182 (380)
T ss_pred HHHHHHHHHcCCCEEEEEC-----CCcC--CCCeEEECCHHHHHHHHHHHHh----h--c----------cCCCCCEEEE
Confidence 3466778899999999944 4432 1356789999887665543210 0 0 0011246778
Q ss_pred ccCCCCCCCceEEEEEe---CCeEEEE---eeCCccccc-hhh--hccHHHHHHHHHHHHHHHhhhhcCC-CCceEEEEe
Q 019606 176 KWYPSLRPEMEFRCFVR---GRCLVGI---SQREVTMCY-PAL--SEKKNDIKVLIQELFDSNVRQEFES-ENYTFDVYV 245 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~---~~~LiaI---SQr~~~~~y-~~L--~~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DVyi 245 (338)
+|. + -..|+.+.+. +|+.+.. ..+.....| ... ....++++..|.+... .+...+.. .-+-+|+.+
T Consensus 183 e~i-~--~~~E~sv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~-~~~~~l~~~G~~~ie~~~ 258 (380)
T TIGR01142 183 EFI-D--FDYEITLLTVRHVDGNTTFCAPIGHRQIDGDYHESWQPQEMSEKALEEAQRIAK-RITDALGGYGLFGVELFV 258 (380)
T ss_pred Eec-C--CCEEEEEEEEEcCCCCEEEecCcceEEeCCeeEEEECCCCCCHHHHHHHHHHHH-HHHHHcCCcceEEEEEEE
Confidence 887 3 3579988764 5653321 111111111 111 1223455555555554 23334444 345689999
Q ss_pred cCCCcEEEEEecCCCC
Q 019606 246 TKDERVKILDFNPWGA 261 (338)
Q Consensus 246 ~~~~~v~LID~NPf~~ 261 (338)
+.+ .++|+|+||=-.
T Consensus 259 ~~~-~~~viEinpR~~ 273 (380)
T TIGR01142 259 KGD-EVIFSEVSPRPH 273 (380)
T ss_pred ECC-cEEEEEeecCCC
Confidence 864 899999999754
No 27
>PRK06849 hypothetical protein; Provisional
Probab=85.78 E-value=3.2 Score=41.18 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=55.5
Q ss_pred EEEeccCCCCCCCceEEEEEeCCeEEEEeeCCcc----c----cchhhhccHHHHHHHHHHHHHHHhhhhcCCC-CceEE
Q 019606 172 LALRKWYPSLRPEMEFRCFVRGRCLVGISQREVT----M----CYPALSEKKNDIKVLIQELFDSNVRQEFESE-NYTFD 242 (338)
Q Consensus 172 LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~----~----~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~D 242 (338)
+++-+|.+ -+..=..+++++|++++.+.+... . +|.. ...++|.+.+..|.. .+... -+-||
T Consensus 188 ~ivQe~I~--G~e~~~~~~~~~G~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~-----~l~~~G~~~~d 258 (389)
T PRK06849 188 WVMQEFIQ--GKEYCSYSIVRSGELRAHSCYKPEYCAGSGAQIAFQP--INHPRIEEFVTHFVK-----ELNYTGQISFD 258 (389)
T ss_pred eEEEEEec--CCeEEEEEEEECCEEEEEEEeeccccCCCCceeEeEE--CCcHHHHHHHHHHHH-----hcCceeEEEEE
Confidence 56777763 222235788899999987763210 0 1111 123566666666665 34433 34599
Q ss_pred EEecCCCcEEEEEecCCCCCcCCCccchHHHh
Q 019606 243 VYVTKDERVKILDFNPWGAFTLPLLFAWEELQ 274 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~~Td~lLFsW~el~ 274 (338)
+..++++++++||+||=. .++--||+ .++.
T Consensus 259 f~~~~~g~~~~iEiNpR~-~~g~~l~~-~~~~ 288 (389)
T PRK06849 259 FIETENGDAYPIECNPRT-TSGLHLFD-PEVA 288 (389)
T ss_pred EEECCCCCEEEEEecCCC-CceeEEcC-hhHH
Confidence 998877899999999943 33444666 4444
No 28
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=84.90 E-value=28 Score=40.24 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.+..+++|-.|+.|=....-. .+...|++.+|+-..+.....-+. .+|. .-.+++-+
T Consensus 143 ea~~~ae~iGyPvIVKP~~GGGG-------rG~riV~~~eEL~~a~~~a~~ea~---~~fg-----------~~~vlIEe 201 (1143)
T TIGR01235 143 EVLDFAAAIGYPVIIKASWGGGG-------RGMRVVRSEADVADAFQRAKSEAK---AAFG-----------NDEVYVEK 201 (1143)
T ss_pred HHHHHHHHcCCCEEEEECCCCCC-------CccEEeCCHHHHHHHHHHHHHHHH---HhcC-----------CCcEEEEE
Confidence 35666788898899996443311 234678999888777664432221 1121 12457788
Q ss_pred cCCCCCCCceEEEEEe---CCeEEEEeeCCccccchh---hh-----ccHHHHHHHHHHHHHHHhhhhcCCCCc-eEEEE
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVGISQREVTMCYPA---LS-----EKKNDIKVLIQELFDSNVRQEFESENY-TFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~LiaISQr~~~~~y~~---L~-----~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~DVy 244 (338)
|. ...+|+.+-|- +|+++++.-|+++..-.+ ++ ...++++..|.+... ++...+...+. .+|+.
T Consensus 202 fI---~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~-kla~aLgy~G~gtVEFl 277 (1143)
T TIGR01235 202 LI---ERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAV-KLAKAVNYINAGTVEFL 277 (1143)
T ss_pred cC---CCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHH-HHHHHcCCcceEEEEEE
Confidence 86 33567777553 467888776665322111 10 123456666666655 34445654444 69999
Q ss_pred ecCCCcEEEEEecCCCCC
Q 019606 245 VTKDERVKILDFNPWGAF 262 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~~ 262 (338)
++.++++++||+||=...
T Consensus 278 vd~dg~~yfIEVNPRiqv 295 (1143)
T TIGR01235 278 VDNDGKFYFIEVNPRIQV 295 (1143)
T ss_pred EeCCCcEEEEEeecCCCc
Confidence 987789999999996543
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=84.81 E-value=25 Score=34.39 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred HHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 96 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
..+.++++++|..++.|-...+- ++ .+...|++.+|+-..++ ...+ ..+++-
T Consensus 123 ~~~~~~~~~~g~P~vvKp~~~g~-~g-----~Gv~~v~~~~el~~a~~--------------~~~~--------~~~lvE 174 (352)
T TIGR01161 123 EELDAALQELGFPVVLKARTGGY-DG-----RGQYRIRNEADLPQAAK--------------ELGD--------RECIVE 174 (352)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CC-----CCEEEECCHHHHHHHHH--------------hcCC--------CcEEEE
Confidence 44677788899899999776420 11 24567888887643332 1111 146777
Q ss_pred ccCCCCCCCceEEEEEe---CCeEEE--EeeCCccc------cchhhhccHHHHHHHHHHHHHHHhhhhcCC-CCceEEE
Q 019606 176 KWYPSLRPEMEFRCFVR---GRCLVG--ISQREVTM------CYPALSEKKNDIKVLIQELFDSNVRQEFES-ENYTFDV 243 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~---~~~Lia--ISQr~~~~------~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DV 243 (338)
+|. + -..|+.+.+- +|++.. +.+..... +.|. ...+++...+.+... .+...+.. .-+-+|+
T Consensus 175 e~I-~--~~~E~sv~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~p~--~~~~~~~~~~~~~a~-~i~~~l~~~G~~~ve~ 248 (352)
T TIGR01161 175 EFV-P--FERELSVIVARSADGETAFYPVVENIHQDGILRYVVAPA--AVPDAIQARAEEIAR-RLMEELGYVGVLAVEM 248 (352)
T ss_pred ecC-C--CCeEEEEEEEEcCCCCEEEECCcccEEeCCEEEEEECCC--CCCHHHHHHHHHHHH-HHHHHcCceeEEEEEE
Confidence 786 3 3678888763 566543 22211100 1122 122344555555544 34445543 3457999
Q ss_pred EecCCCcEEEEEecCCCC
Q 019606 244 YVTKDERVKILDFNPWGA 261 (338)
Q Consensus 244 yi~~~~~v~LID~NPf~~ 261 (338)
.++.+++++++|+||=-.
T Consensus 249 ~~~~dg~~~v~EinpR~~ 266 (352)
T TIGR01161 249 FVLPDGRLLINELAPRVH 266 (352)
T ss_pred EEeCCCcEEEEEecCCCC
Confidence 999888899999999643
No 30
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=83.17 E-value=32 Score=34.10 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=74.6
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..++.|-.-.. -|+ .+...|++.+|+-.. ++.... -.+++-+
T Consensus 126 ~l~~~~~~~g~P~vlKp~~~g-~~g-----~Gv~~v~~~~el~~a--------------~~~~~~--------~~~ivEe 177 (372)
T PRK06019 126 DLEAALADLGLPAVLKTRRGG-YDG-----KGQWVIRSAEDLEAA--------------WALLGS--------VPCILEE 177 (372)
T ss_pred HHHHHHHHcCCcEEEEeCCCC-cCC-----CCeEEECCHHHHHHH--------------HHhcCC--------CCEEEEe
Confidence 466778899999999975321 011 234567887765332 322211 2357788
Q ss_pred cCCCCCCCceEEEEE-e--CCeEEEE--eeCCccc------cchhhhccHHHHHHHHHHHHHHHhhhhcCC-CCceEEEE
Q 019606 177 WYPSLRPEMEFRCFV-R--GRCLVGI--SQREVTM------CYPALSEKKNDIKVLIQELFDSNVRQEFES-ENYTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV-~--~~~LiaI--SQr~~~~------~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DVy 244 (338)
|. + -..|+.+-| + +|+++.. .+....+ ..|. ...+++...+.+... .+...+.. .-+-+|+.
T Consensus 178 ~I-~--~~~E~sv~~~~~~~G~~~~~p~~e~~~~~gi~~~~~~pa--~~~~~~~~~~~~~a~-~i~~~L~~~G~~~vEff 251 (372)
T PRK06019 178 FV-P--FEREVSVIVARGRDGEVVFYPLVENVHRNGILRTSIAPA--RISAELQAQAEEIAS-RIAEELDYVGVLAVEFF 251 (372)
T ss_pred cC-C--CCeEEEEEEEECCCCCEEEeCCcccEEeCCEEEEEECCC--CCCHHHHHHHHHHHH-HHHHHcCccceeEEEEE
Confidence 87 3 367888764 3 4555432 1211100 1111 123456666666665 34444543 34578999
Q ss_pred ecCCCcEEEEEecCCC
Q 019606 245 VTKDERVKILDFNPWG 260 (338)
Q Consensus 245 i~~~~~v~LID~NPf~ 260 (338)
++.+++++++|+||=-
T Consensus 252 ~~~dg~~~v~EinpR~ 267 (372)
T PRK06019 252 VTGDGELLVNEIAPRP 267 (372)
T ss_pred EcCCCeEEEEEecCCc
Confidence 9888889999999953
No 31
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=81.90 E-value=43 Score=34.42 Aligned_cols=139 Identities=9% Similarity=0.013 Sum_probs=74.5
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++.+++|..|+.|=...+- ..+...|++.+|+-..++....-.. .+|. .-.+++-+|
T Consensus 147 ~~~~~~~igyPvvvKp~~ggg-------g~Gv~~v~~~~eL~~a~~~~~~~~~---~~~~-----------~~~vlvEef 205 (467)
T PRK12833 147 ALEVAARIGYPLMIKAAAGGG-------GRGIRVAHDAAQLAAELPLAQREAQ---AAFG-----------DGGVYLERF 205 (467)
T ss_pred HHHHHHHhCCCEEEEECCCCC-------CCeEEEECCHHHHHHHHHHHHHHHH---HhcC-----------CCcEEEEec
Confidence 556678889889999443321 1245679999998776654322111 1121 123567777
Q ss_pred CCCCCCCceEEEEE-eCCe-EEEEe------eCCccccchhhh--ccHHHHHHHHHHHHHHHhhhhcCC-CCceEEEEec
Q 019606 178 YPSLRPEMEFRCFV-RGRC-LVGIS------QREVTMCYPALS--EKKNDIKVLIQELFDSNVRQEFES-ENYTFDVYVT 246 (338)
Q Consensus 178 ~~~i~ps~EFRcFV-~~~~-LiaIS------Qr~~~~~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DVyi~ 246 (338)
. . ..+|+-+-| .|++ .+.+. ||.....++.-. ...+.++..|.+.... +...+.. .-+.+|+.++
T Consensus 206 i-~--~~~ei~v~v~~dg~~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~-~~~alg~~G~~~vEf~~~ 281 (467)
T PRK12833 206 I-A--RARHIEVQILGDGERVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVR-LARQVGYRGAGTLEYLFD 281 (467)
T ss_pred C-C--CCEEEEEEEEeCCCcEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHH-HHHHcCCcCcceEEEEEe
Confidence 6 2 235666633 4543 44443 332212221111 1223455555555442 3334443 3357888887
Q ss_pred -CCCcEEEEEecCCCC
Q 019606 247 -KDERVKILDFNPWGA 261 (338)
Q Consensus 247 -~~~~v~LID~NPf~~ 261 (338)
+++++++||+||=-.
T Consensus 282 ~~~g~~~~iEvNpR~~ 297 (467)
T PRK12833 282 DARGEFYFIEMNTRIQ 297 (467)
T ss_pred cCCCCEEEEEEECCCC
Confidence 457899999998543
No 32
>PF15585 Imm46: Immunity protein 46
Probab=81.21 E-value=9.3 Score=33.17 Aligned_cols=95 Identities=22% Similarity=0.179 Sum_probs=63.8
Q ss_pred CchhHHHHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCc
Q 019606 90 SFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPS 169 (338)
Q Consensus 90 ~Fpel~~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~ 169 (338)
.+..+.++|++.|++++..=+.+|+|..-..-.|+..-.+=+=....||+-|++- |+.- .+.+
T Consensus 22 ~~~~~~~~i~~~i~~~~~~~~~~L~~~NG~~~l~~~g~~NHr~~~~~eii~lf~~---i~e~--------------aPGS 84 (129)
T PF15585_consen 22 KLEKIIQEIQERISELDWGGLVDLRAMNGSYFLHFGGLSNHRGQEAPEIIELFER---IAEI--------------APGS 84 (129)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEecCCcEEEEEccccCCCccchHHHHHHHHH---HHHh--------------CCCc
Confidence 3578888999999999866789999999999999874333344446678777763 2221 1233
Q ss_pred e-EEEEeccCCCCCCCceEEEEEe-CCeEEEEeeCCc
Q 019606 170 F-FLALRKWYPSLRPEMEFRCFVR-GRCLVGISQREV 204 (338)
Q Consensus 170 ~-~LvLrkW~~~i~ps~EFRcFV~-~~~LiaISQr~~ 204 (338)
| .|+.|-=. +-.-..||||||- .|++.- |+|.
T Consensus 85 YGlLy~rDDE-d~~~~neFrV~vl~RG~~te--~~D~ 118 (129)
T PF15585_consen 85 YGLLYIRDDE-DPEHFNEFRVFVLARGELTE--QRDP 118 (129)
T ss_pred eeEEEEecCC-CCCCCCceEEEEEEccEEee--ccCC
Confidence 4 34444333 4467889999994 677765 5554
No 33
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=80.87 E-value=3.7 Score=35.86 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhc-CCCCc-eEEEEecCCCcEEEEEecC
Q 019606 219 KVLIQELFDSNVRQEF-ESENY-TFDVYVTKDERVKILDFNP 258 (338)
Q Consensus 219 ~~~I~~F~~~~i~~~~-~~~~y-v~DVyi~~~~~v~LID~NP 258 (338)
...|.+... .+...+ .+..| -+|+.++. +++++|||||
T Consensus 117 ~~~~~~~~~-~i~~~l~gl~G~~giD~I~~~-~~~~viEINP 156 (161)
T PF02655_consen 117 KEEIIELAR-RIAEALPGLRGYVGIDFILDD-GGPYVIEINP 156 (161)
T ss_dssp HHHHHHHHH-HHHTTSTT--EEEEEEEEESS--SEEEEEEES
T ss_pred HHHHHHHHH-HHHHHcCCCeeeEeEEEEEeC-CcEEEEEEcC
Confidence 444555554 455567 45444 69999987 8999999999
No 34
>PRK12999 pyruvate carboxylase; Reviewed
Probab=80.57 E-value=41 Score=38.93 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
++.++.+++|-.|+.|=...+-. -+...|++.+|+-..++.....+. .+|. .-.+++-+
T Consensus 147 ea~~~a~~iGyPvVVKP~~GgGG-------rGv~vV~~~eEL~~a~~~a~~ea~---~~fg-----------~~~vlVEe 205 (1146)
T PRK12999 147 EALEFAEEIGYPIMLKASAGGGG-------RGMRIVRSEEELEEAFERAKREAK---AAFG-----------NDEVYLEK 205 (1146)
T ss_pred HHHHHHHHhCCCEEEEECCCCCC-------CCeEEeCCHHHHHHHHHHHHHHHH---hhcC-----------CCcEEEec
Confidence 35566788898899996554421 244678999987766654322111 1111 12467777
Q ss_pred cCCCCCCCceEEEEE---eCCeEEEEeeCCccccchh---hh-----ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEE
Q 019606 177 WYPSLRPEMEFRCFV---RGRCLVGISQREVTMCYPA---LS-----EKKNDIKVLIQELFDSNVRQEFESEN-YTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV---~~~~LiaISQr~~~~~y~~---L~-----~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVy 244 (338)
|. . ...|+.+-| .+|+++++.-|+++....+ ++ .....++..|.+... .+...+...+ ..+|+.
T Consensus 206 fI-~--g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~-kl~~algy~G~gtVEfl 281 (1146)
T PRK12999 206 YV-E--NPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAV-KLARAVGYVNAGTVEFL 281 (1146)
T ss_pred CC-C--CCeEEEEEEEEECCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHH-HHHHHcCCCceEEEEEE
Confidence 87 3 345566633 2578888865554321111 00 123445555555544 3333455444 468999
Q ss_pred ecCCCcEEEEEecCCCC
Q 019606 245 VTKDERVKILDFNPWGA 261 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~ 261 (338)
++.++++++||+||=..
T Consensus 282 vd~dg~~yfIEINpRlq 298 (1146)
T PRK12999 282 VDADGNFYFIEVNPRIQ 298 (1146)
T ss_pred EECCCCEEEEEEECCCC
Confidence 98777999999999643
No 35
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=79.81 E-value=15 Score=35.05 Aligned_cols=133 Identities=16% Similarity=0.126 Sum_probs=76.9
Q ss_pred HHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCCC
Q 019606 103 ESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLR 182 (338)
Q Consensus 103 ~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i~ 182 (338)
..+|-.|+.|=+..+-. -+..+|.+.+|+...++. ++.. .-.+++-+|.
T Consensus 122 ~~l~~P~vvKP~~g~~s-------~Gv~~v~~~~el~~~~~~----------~~~~----------~~~vlVEeyI---- 170 (299)
T PRK14571 122 SPLGYPCVVKPRREGSS-------IGVFICESDEEFQHALKE----------DLPR----------YGSVIVQEYI---- 170 (299)
T ss_pred hhcCCCEEEecCCCCCc-------CCEEEECCHHHHHHHHHH----------HHhh----------CCcEEEEccc----
Confidence 45666677775543321 234578888887655432 1110 0136677776
Q ss_pred CCceEEEEEeCC----eEEEEeeCCcc-ccchhh------------h-ccHHHHHHHHHHHHHHHhhhhcCCCCc-eEEE
Q 019606 183 PEMEFRCFVRGR----CLVGISQREVT-MCYPAL------------S-EKKNDIKVLIQELFDSNVRQEFESENY-TFDV 243 (338)
Q Consensus 183 ps~EFRcFV~~~----~LiaISQr~~~-~~y~~L------------~-~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~DV 243 (338)
+..||+|-|-.. .+.++.+.... .+|++- . ...+++.+.|.+... ++...+...+| -+|+
T Consensus 171 ~G~E~sv~vl~~~~~~~vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~~l~~~~~~~i~~~a~-~~~~~lg~~g~~rvD~ 249 (299)
T PRK14571 171 PGREMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPAPLNPEEERLVKETAL-KAFVEAGCRGFGRVDG 249 (299)
T ss_pred cceEEEEEEEcCCCCeeeeceEEEecCCCccccccccCCCCeeEEeCCCCCHHHHHHHHHHHH-HHHHHhCCCceEEEEE
Confidence 368999998742 47777653221 122211 0 122455555555554 33345665555 5899
Q ss_pred EecCCCcEEEEEecCCCCCcCCCcc
Q 019606 244 YVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 244 yi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
.++ +++++++|+||--+.|..-+|
T Consensus 250 ~~~-~~~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 250 IFS-DGRFYFLEINTVPGLTELSDL 273 (299)
T ss_pred EEE-CCcEEEEEeeCCCCCCccCHH
Confidence 886 579999999998765554444
No 36
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=78.72 E-value=42 Score=33.50 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
++.++++++|..|+.|-...+-. .+...|.+.+|+-..++.- +.. . ..-.+++.+
T Consensus 93 ea~~~~~~~g~PvVvKp~~~~~g-------kGV~iv~~~~el~~a~~~~----------~~~-------~-~~~~vlvEe 147 (379)
T PRK13790 93 DALTYIENCELPVVVKKDGLAAG-------KGVIIADTIEAARSAIEIM----------YGD-------E-EEGTVVFET 147 (379)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCC-------CCEEEECCHHHHHHHHHHH----------Hhc-------C-CCCeEEEEE
Confidence 35667788999999996543222 2346788888876555431 110 0 012468888
Q ss_pred cCCCCCCCceEEEEEeCCeEE---EEeeCCccccch-----------------hhhccHHHHHHHH-HHHHHHHhhhhcC
Q 019606 177 WYPSLRPEMEFRCFVRGRCLV---GISQREVTMCYP-----------------ALSEKKNDIKVLI-QELFDSNVRQEFE 235 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~Li---aISQr~~~~~y~-----------------~L~~~~~~i~~~I-~~F~~~~i~~~~~ 235 (338)
|. .= +.....+|+.++..+ ++.|.+. ..|+ ++. +++.+.+ .+... .+...+.
T Consensus 148 ~i-~G-~E~sv~~~~~g~~~~~~~~~~~~~k-r~~~~d~g~~tgg~~~~~p~~~l~---~~~~~~~~~~i~~-~~~~aL~ 220 (379)
T PRK13790 148 FL-EG-EEFSLMTFVNGDLAVPFDCIAQDHK-RAFDHDEGPNTGGMGAYCPVPHIS---DDVLKLTNETIAQ-PIAKAML 220 (379)
T ss_pred cc-cC-ceEEEEEEeeCCEEEeccccccccc-ccccCCCCCcCCCCceEeeCCCCC---HHHHHHHHHHHHH-HHHHHHH
Confidence 87 32 333344555444333 6677553 2222 222 2222222 22222 2222232
Q ss_pred CC--Cc----eEEEEecCCCcEEEEEecC
Q 019606 236 SE--NY----TFDVYVTKDERVKILDFNP 258 (338)
Q Consensus 236 ~~--~y----v~DVyi~~~~~v~LID~NP 258 (338)
.. +| -+|+.++.+ .++|||+||
T Consensus 221 ~~g~~~~Gvl~~e~~lt~~-g~~viEiN~ 248 (379)
T PRK13790 221 NEGYQFFGVLYIGAILTKD-GPKVIEFNA 248 (379)
T ss_pred HcCCCceeEEEEEEEEeCC-CeEEEEEEc
Confidence 22 23 268888764 599999999
No 37
>PRK02186 argininosuccinate lyase; Provisional
Probab=77.22 E-value=66 Score=35.97 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.+.++++|..|+.|=..++-. .+...|+|.+|+...++.- ... ....+++-+
T Consensus 133 e~~~~~~~~~~PvVVKP~~g~gS-------~GV~~v~~~~el~~a~~~~-------~~~------------~~~~~lvEE 186 (887)
T PRK02186 133 VALDALDGLTYPVVVKPRMGSGS-------VGVRLCASVAEAAAHCAAL-------RRA------------GTRAALVQA 186 (887)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCC-------CCeEEECCHHHHHHHHHHH-------Hhc------------CCCcEEEee
Confidence 45666778888899997655422 2456799998875544321 000 013457777
Q ss_pred cCCCCCCCceEEEEEeCC--eEEEEeeCCccc--cch-----hhhccHHHHHHHHHHHHHHHhhhhcCC--CCceEEEEe
Q 019606 177 WYPSLRPEMEFRCFVRGR--CLVGISQREVTM--CYP-----ALSEKKNDIKVLIQELFDSNVRQEFES--ENYTFDVYV 245 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~--~LiaISQr~~~~--~y~-----~L~~~~~~i~~~I~~F~~~~i~~~~~~--~~yv~DVyi 245 (338)
|.+ -+..-..+++.++ .+++|+.+.... +|- +-......+...|.++.... ...+.. .-+-+|+.+
T Consensus 187 fI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~g~~~P~~l~~~~~~~l~~~~~~~-l~aLG~~~G~~hvE~~~ 263 (887)
T PRK02186 187 YVE--GDEYSVETLTVARGHQVLGITRKHLGPPPHFVEIGHDFPAPLSAPQRERIVRTVLRA-LDAVGYAFGPAHTELRV 263 (887)
T ss_pred ccc--CCcEEEEEEEECCcEEEEEEEeeecCCCCCeEEeccccCCCCCHHHHHHHHHHHHHH-HHHcCCCcCceEEEEEE
Confidence 763 2444456677766 577888765421 110 10122344555566665533 334443 446789988
Q ss_pred cCCCcEEEEEecCC
Q 019606 246 TKDERVKILDFNPW 259 (338)
Q Consensus 246 ~~~~~v~LID~NPf 259 (338)
+. ++++|||+||=
T Consensus 264 t~-~g~~liEIn~R 276 (887)
T PRK02186 264 RG-DTVVIIEINPR 276 (887)
T ss_pred EC-CCEEEEEECCC
Confidence 75 67999999993
No 38
>PRK14016 cyanophycin synthetase; Provisional
Probab=75.83 E-value=11 Score=41.18 Aligned_cols=79 Identities=24% Similarity=0.207 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-. ++.|= .+-++.+++.+++...++.-.. . ...+++-+
T Consensus 240 ~a~~~a~~iG~PvVVKP~-----~G~~G-~GV~~~v~~~~el~~a~~~a~~----------~----------~~~viVEe 293 (727)
T PRK14016 240 DAWEAAEEIGYPVVVKPL-----DGNHG-RGVTVNITTREEIEAAYAVASK----------E----------SSDVIVER 293 (727)
T ss_pred HHHHHHHHcCCCEEEEEC-----CCCCC-CceEEecCCHHHHHHHHHHHHH----------h----------CCeEEEEE
Confidence 356677899999999954 43321 1123347787776655542211 0 12457777
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeCCcc
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQREVT 205 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr~~~ 205 (338)
+. +..|+||+|-+++++|+.+|-..
T Consensus 294 ~I----~G~d~Rv~Vvgg~vvaa~~r~~~ 318 (727)
T PRK14016 294 YI----PGKDHRLLVVGGKLVAAARREPP 318 (727)
T ss_pred ec----CCceEEEEEECCEEEEEEEecCc
Confidence 76 47899999999999999999763
No 39
>PRK07206 hypothetical protein; Provisional
Probab=73.96 E-value=87 Score=31.10 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCC---eeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEE
Q 019606 96 LKIKESIESLGG---AVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFL 172 (338)
Q Consensus 96 ~~I~~aI~~lgG---~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~L 172 (338)
+.+.++++++|- .|+.|-..++- ..+...|+|.+|+...++... +..... ......+
T Consensus 133 ~e~~~~~~~~g~~~~P~VvKP~~g~g-------s~gv~~v~~~~el~~~~~~~~----------~~~~~~---~~~~~~~ 192 (416)
T PRK07206 133 EEAEAWLRENGLIDRPVVIKPLESAG-------SDGVFICPAKGDWKHAFNAIL----------GKANKL---GLVNETV 192 (416)
T ss_pred HHHHHHHHhcCCCCCCEEEeCCCCCC-------CCCEEEeCCHHHHHHHHHHHH----------hccccC---CCCCCeE
Confidence 346677777765 88888544331 135578999988755443311 000000 0012356
Q ss_pred EEeccCCCCCCCceEEEEEeCCeEE--EEeeCCcc--c----cch--hhhccHHHHHHHHHHHHHHHhhhhcCC--CCce
Q 019606 173 ALRKWYPSLRPEMEFRCFVRGRCLV--GISQREVT--M----CYP--ALSEKKNDIKVLIQELFDSNVRQEFES--ENYT 240 (338)
Q Consensus 173 vLrkW~~~i~ps~EFRcFV~~~~Li--aISQr~~~--~----~y~--~L~~~~~~i~~~I~~F~~~~i~~~~~~--~~yv 240 (338)
++-+|.+ -+..-.-+|+.+|+++ +|+++... . .+. .+..........|.++.. .+...+.. .-+-
T Consensus 193 lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~-~~~~alg~~~G~~h 269 (416)
T PRK07206 193 LVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTK-QALDALGIKNGPAH 269 (416)
T ss_pred EEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHH-HHHHHcCCccCCce
Confidence 7777762 2333345678899854 56655321 1 111 111122345556666655 33445554 4467
Q ss_pred EEEEecCCCcEEEEEecCCC
Q 019606 241 FDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 241 ~DVyi~~~~~v~LID~NPf~ 260 (338)
+|+.++.+ .++|||+||=.
T Consensus 270 ~E~~~~~~-g~~liEin~R~ 288 (416)
T PRK07206 270 AEVMLTAD-GPRLIEIGARL 288 (416)
T ss_pred EEEEEcCC-CCEEEEECCcc
Confidence 89998865 57999999954
No 40
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=73.81 E-value=58 Score=31.05 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=64.1
Q ss_pred HHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCCC
Q 019606 103 ESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLR 182 (338)
Q Consensus 103 ~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i~ 182 (338)
+++|..++.|-..++- ..+...|.|.+|+...+.... ..++.+|.+ .
T Consensus 145 ~~~~~P~viKP~~g~~-------s~gv~~v~~~~el~~~~~~~~------------------------~~lvqeyi~--G 191 (326)
T PRK12767 145 GELQFPLFVKPRDGSA-------SIGVFKVNDKEELEFLLEYVP------------------------NLIIQEFIE--G 191 (326)
T ss_pred ccCCCCEEEEeCCCCC-------ccCeEEeCCHHHHHHHHHhCC------------------------CeEEEeccC--C
Confidence 5667778888433221 134567888887755543211 345666651 2
Q ss_pred CCceEEEEEe-CCeEEEEeeCCcc-----ccchhhhccHHHHHHHHHHHHHHHhhhhcCC-CCceEEEEecCCCcEEEEE
Q 019606 183 PEMEFRCFVR-GRCLVGISQREVT-----MCYPALSEKKNDIKVLIQELFDSNVRQEFES-ENYTFDVYVTKDERVKILD 255 (338)
Q Consensus 183 ps~EFRcFV~-~~~LiaISQr~~~-----~~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DVyi~~~~~v~LID 255 (338)
+..-..+++. +|+++++..+... ...........++++...++.. .+.. .-+-+|+.++. +++++||
T Consensus 192 ~e~~v~~~~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~-----~lg~~G~~~vd~~~~~-g~~~viE 265 (326)
T PRK12767 192 QEYTVDVLCDLNGEVISIVPRKRIEVRAGETSKGVTVKDPELFKLAERLAE-----ALGARGPLNIQCFVTD-GEPYLFE 265 (326)
T ss_pred ceEEEEEEEcCCCCEEEEEEeeeeeecCCceeEEEEcCCHHHHHHHHHHHH-----hcCCeeeEEEEEEEEC-CeEEEEE
Confidence 3333345665 7888775533320 0111111122455554444443 3443 34567888876 7899999
Q ss_pred ecCC
Q 019606 256 FNPW 259 (338)
Q Consensus 256 ~NPf 259 (338)
+||-
T Consensus 266 iNpR 269 (326)
T PRK12767 266 INPR 269 (326)
T ss_pred EeCC
Confidence 9994
No 41
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=72.97 E-value=7.5 Score=37.02 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHH---HhhhhcCC--CCceEEEEecCCCcEEEEEecCC
Q 019606 216 NDIKVLIQELFDS---NVRQEFES--ENYTFDVYVTKDERVKILDFNPW 259 (338)
Q Consensus 216 ~~i~~~I~~F~~~---~i~~~~~~--~~yv~DVyi~~~~~v~LID~NPf 259 (338)
..+.+.|.++-.. .+...++. ..+-+|+-|+.++++||||+|+-
T Consensus 184 ~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWliEvN~k 232 (262)
T PF14398_consen 184 EKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLIEVNSK 232 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEEEEeCC
Confidence 3455555555442 34456664 78899999999999999999985
No 42
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=72.05 E-value=74 Score=37.09 Aligned_cols=138 Identities=11% Similarity=0.141 Sum_probs=80.6
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|-.|+.|=...+ . ..+...|++.+|+-..+..-...... .|. ...+++-+|
T Consensus 142 a~~~a~~igyPvVVKP~~gg--G-----G~GV~iv~~~eEL~~a~~~~~~~~~~---~f~-----------~~~vlVEef 200 (1201)
T TIGR02712 142 ALEAAKEIGYPVMLKSTAGG--G-----GIGMQKCDSAAELAEAFETVKRLGES---FFG-----------DAGVFLERF 200 (1201)
T ss_pred HHHHHHhcCCeEEEEECCCC--C-----CCCEEEECCHHHHHHHHHHHHHHHHH---hcC-----------CCcEEEEec
Confidence 55566888989999965544 1 13456899999887655543222210 111 123677888
Q ss_pred CCCCCCCceEEEEEe---CCeEEEEeeCCcccc---chhhh-----ccHHHHHHHHHHHHHHHhhhhcCC-CCceEEEEe
Q 019606 178 YPSLRPEMEFRCFVR---GRCLVGISQREVTMC---YPALS-----EKKNDIKVLIQELFDSNVRQEFES-ENYTFDVYV 245 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~---~~~LiaISQr~~~~~---y~~L~-----~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DVyi 245 (338)
. . ...|+-+.|- +++++++..|+++.. ...++ ...+++++.|.+... .+...+.. .-..+++.+
T Consensus 201 I-~--g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~-~l~~aLgy~G~~~VEfil 276 (1201)
T TIGR02712 201 V-E--NARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAE-RLGEAVNYRSAGTVEFIY 276 (1201)
T ss_pred C-C--CCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHH-HHHHhcCccceEEEEEEE
Confidence 7 3 3467777554 468888877664211 11111 123455555555554 33334443 344789888
Q ss_pred cC-CCcEEEEEecCCC
Q 019606 246 TK-DERVKILDFNPWG 260 (338)
Q Consensus 246 ~~-~~~v~LID~NPf~ 260 (338)
+. ++++++||+||=-
T Consensus 277 d~~~g~~y~lEVNpRl 292 (1201)
T TIGR02712 277 DEARDEFYFLEVNTRL 292 (1201)
T ss_pred ECCCCCEEEEEEECCc
Confidence 75 4789999999843
No 43
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=70.18 E-value=92 Score=31.78 Aligned_cols=152 Identities=13% Similarity=0.010 Sum_probs=80.6
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.+.++++|..|+.|=+..+-..+. ..|++.+|+...++..-.- ..|. .. .-.+++-++
T Consensus 135 a~~~~~~~~~PvVVKp~~~~~gkGV-------~vv~~~eel~~a~~~~~~~-----~~~g--------~~-~~~vlIEEf 193 (426)
T PRK13789 135 SLSYLESEMLPIVIKADGLAAGKGV-------TVATEKKMAKRALKEIFKD-----KKFG--------QS-GNQVVIEEF 193 (426)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCcE-------EEECCHHHHHHHHHHHHhh-----cccc--------CC-CCeEEEEEC
Confidence 4566788898999998876554444 4578877776655432110 0011 01 124677777
Q ss_pred CCCCCCCceEEEEEe-CCe---EEEEeeCCccccchh-----------hh---ccHHHHHHHHHHHHHHHhhhh-----c
Q 019606 178 YPSLRPEMEFRCFVR-GRC---LVGISQREVTMCYPA-----------LS---EKKNDIKVLIQELFDSNVRQE-----F 234 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~-~~~---LiaISQr~~~~~y~~-----------L~---~~~~~i~~~I~~F~~~~i~~~-----~ 234 (338)
. . ..||=|++- +++ +..++|.+- ..|+. .. -..+++.+.|.+-..+.+... .
T Consensus 194 l-~---G~E~Sv~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~ 268 (426)
T PRK13789 194 M-E---GQEASIFAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGH 268 (426)
T ss_pred c-C---CeEEEEEEEECCCEEEEccceEecc-cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6 2 368888764 443 345567533 22221 00 012333333332221122111 2
Q ss_pred CCCC-ceEEEEecCCCcEEEEEecCCCC--CcCCCc----cchHHHhh
Q 019606 235 ESEN-YTFDVYVTKDERVKILDFNPWGA--FTLPLL----FAWEELQQ 275 (338)
Q Consensus 235 ~~~~-yv~DVyi~~~~~v~LID~NPf~~--~Td~lL----FsW~el~~ 275 (338)
+... +-+++.++++++++++|+||=-+ -|..+| .+|.++..
T Consensus 269 ~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~ 316 (426)
T PRK13789 269 PYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLY 316 (426)
T ss_pred CceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHHHHH
Confidence 2222 35799999878899999999743 233333 26655443
No 44
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=68.42 E-value=1.1e+02 Score=30.17 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|=...+-. .+...|.+.+|+...++.... . . +.....+++-+
T Consensus 140 ~l~~~~~~~g~P~VvKP~~g~~s-------~Gv~~v~~~~el~~~~~~~~~----------~-~-----~~~~~~~lvEe 196 (395)
T PRK09288 140 ELRAAVEEIGYPCVVKPVMSSSG-------KGQSVVRSPEDIEKAWEYAQE----------G-G-----RGGAGRVIVEE 196 (395)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCC-------CCeEEECCHHHHHHHHHHHHh----------h-c-----cccCCCEEEEE
Confidence 46677788898999995543322 234578888886554442110 0 0 00012467888
Q ss_pred cCCCCCCCceEEEEE-eC-C-eEEEEeeC-Cc--c-c----cchhhhccHHHHHHHHHHHHHHHhhhhcCC-CCceEEEE
Q 019606 177 WYPSLRPEMEFRCFV-RG-R-CLVGISQR-EV--T-M----CYPALSEKKNDIKVLIQELFDSNVRQEFES-ENYTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV-~~-~-~LiaISQr-~~--~-~----~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DVy 244 (338)
|. . -..|+.+.+ ++ + +...+..- +. . . +.+. ...+++.+.|.+.... +...+.. .-+-+|+.
T Consensus 197 fi-~--~~~E~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~l~~~~~~~i~~~~~~-~~~~L~~~G~~~ve~~ 270 (395)
T PRK09288 197 FI-D--FDYEITLLTVRAVDGGTHFCAPIGHRQEDGDYRESWQPQ--PMSPAALEEAQEIAKK-VTDALGGRGLFGVELF 270 (395)
T ss_pred ec-C--CCEEEEEEEEEcCCCCEEEecCcccEEECCEEEEEECCC--CCCHHHHHHHHHHHHH-HHHHcCCeeEEEEEEE
Confidence 87 3 367888875 22 2 23222111 10 0 0 1111 2234555555555553 3334443 23458888
Q ss_pred ecCCCcEEEEEecCCC
Q 019606 245 VTKDERVKILDFNPWG 260 (338)
Q Consensus 245 i~~~~~v~LID~NPf~ 260 (338)
++.+ .++|||+||=-
T Consensus 271 ~~~~-~~~viEinpR~ 285 (395)
T PRK09288 271 VKGD-EVYFSEVSPRP 285 (395)
T ss_pred EeCC-eEEEEEecCCC
Confidence 8765 89999999963
No 45
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=66.22 E-value=1e+02 Score=35.35 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=77.4
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.+.++++|-.|+.|=..++-. .+...|.+.+|+...++.... . . ....+++-+|
T Consensus 696 ~~~~~~~igyPvIVKP~~~~Gg-------~gv~iv~~~eeL~~~l~~a~~----------~-s-------~~~~vlVeef 750 (1050)
T TIGR01369 696 AVEFASEIGYPVLVRPSYVLGG-------RAMEIVYNEEELRRYLEEAVE----------V-S-------PEHPVLIDKY 750 (1050)
T ss_pred HHHHHHhcCCCEEEEECCCCCC-------CCeEEECCHHHHHHHHHHHHH----------h-C-------CCCCEEEeec
Confidence 4455677887788885433222 234678888887666553211 0 0 1123577777
Q ss_pred CCCCCCCceEEEEEeCCeEEE--EeeCCccc---------cchhhhccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEEe
Q 019606 178 YPSLRPEMEFRCFVRGRCLVG--ISQREVTM---------CYPALSEKKNDIKVLIQELFDSNVRQEFESEN-YTFDVYV 245 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~~~~Lia--ISQr~~~~---------~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVyi 245 (338)
. .=-+..+..+++.+++++. |.++-... .+|.. ....++...|.++.. .|...+.... +-+|+.+
T Consensus 751 I-~~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sGds~~~~P~~-~l~~~~~~~i~~~a~-ki~~aLgi~G~~~vqf~~ 827 (1050)
T TIGR01369 751 L-EDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQ-TLSAEIVDRIKDIVR-KIAKELNVKGLMNIQFAV 827 (1050)
T ss_pred C-CCCeEEEEEEEEeCCEEEEEEEEEeecccCCcCCCceEEecCC-CCCHHHHHHHHHHHH-HHHHHCCCcceEEEEEEE
Confidence 6 2234566777888887664 55532111 12211 112344555555554 3444454433 4588887
Q ss_pred cCCCcEEEEEecCCCCCcCC
Q 019606 246 TKDERVKILDFNPWGAFTLP 265 (338)
Q Consensus 246 ~~~~~v~LID~NPf~~~Td~ 265 (338)
+. +++++||+||-..+|-+
T Consensus 828 ~~-~~~yvIEvNpR~s~t~p 846 (1050)
T TIGR01369 828 KD-GEVYVIEVNPRASRTVP 846 (1050)
T ss_pred EC-CeEEEEEEeCCCCchHH
Confidence 64 79999999997654433
No 46
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=65.90 E-value=1.8e+02 Score=30.47 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.+.++++|-.|+.|=...+ .+ -+-..|++.+|+-..+......+. .+|. .-.+++-+
T Consensus 143 e~~~~a~~igyPvvIKp~~Gg--GG-----~Gv~iv~~~~eL~~a~~~~~~~a~---~~f~-----------~~~v~vE~ 201 (499)
T PRK08654 143 EAKEIAEEIGYPVIIKASAGG--GG-----IGMRVVYSEEELEDAIESTQSIAQ---SAFG-----------DSTVFIEK 201 (499)
T ss_pred HHHHHHHHhCCCEEEEeCCCC--CC-----CeEEEeCCHHHHHHHHHHHHHHHH---HhCC-----------CCeEEEEe
Confidence 466677889988999954433 11 244678999988777665332211 1121 12467788
Q ss_pred cCCCCCCCceEEEEE-e--CCeEEEEeeCCccccc--hhhh------ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEE
Q 019606 177 WYPSLRPEMEFRCFV-R--GRCLVGISQREVTMCY--PALS------EKKNDIKVLIQELFDSNVRQEFESEN-YTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV-~--~~~LiaISQr~~~~~y--~~L~------~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVy 244 (338)
|. . ..+|+.+-| . +|+++++.-|+++... ..+. ....++++.|.+... .+...+...+ ..+|+.
T Consensus 202 ~I-~--~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~-~l~~algy~g~gtVEfl 277 (499)
T PRK08654 202 YL-E--KPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAV-KAAKAINYENAGTVEFL 277 (499)
T ss_pred CC-C--CCcEEEEEEEEcCCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHH-HHHHHcCCCCceEEEEE
Confidence 87 3 345666533 2 3688888666543211 1111 123556666666655 3444565555 358877
Q ss_pred ecCCCcEEEEEecCCCCCc
Q 019606 245 VTKDERVKILDFNPWGAFT 263 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~~T 263 (338)
++ +++++++|+||=-..+
T Consensus 278 ~~-~g~~yflEiNpRlqve 295 (499)
T PRK08654 278 YS-NGNFYFLEMNTRLQVE 295 (499)
T ss_pred EE-CCcEEEEEEECCCCCC
Confidence 74 5799999999965433
No 47
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=64.66 E-value=2e+02 Score=30.71 Aligned_cols=136 Identities=11% Similarity=0.092 Sum_probs=77.4
Q ss_pred HHHHHHHHHhCCeeeeeccc-CCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEE
Q 019606 96 LKIKESIESLGGAVFPKLNW-SAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLAL 174 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNw-ssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvL 174 (338)
..+.++++++|-.++.|-.. ++-.- +...|++.+|+-..+..- + . ....+++
T Consensus 146 ~el~~~~~~ig~P~VvKP~~ggs~g~-------Gv~~v~~~~eL~~a~~~~----------~----~------~~~~vlv 198 (577)
T PLN02948 146 ESAEKAGDLFGYPLMLKSRRLAYDGR-------GNAVAKTEEDLSSAVAAL----------G----G------FERGLYA 198 (577)
T ss_pred HHHHHHHHhcCCcEEEEeCCCCCCCC-------CeEEECCHHHHHHHHHHh----------h----C------CCCcEEE
Confidence 34677888999889999753 21111 234688888765443321 1 0 0113466
Q ss_pred eccCCCCCCCceEEEEEe---CCeEEE--Ee---eCCccc---cchhhhccHHHHHHHHHHHHHHHhhhhcCCCC-ceEE
Q 019606 175 RKWYPSLRPEMEFRCFVR---GRCLVG--IS---QREVTM---CYPALSEKKNDIKVLIQELFDSNVRQEFESEN-YTFD 242 (338)
Q Consensus 175 rkW~~~i~ps~EFRcFV~---~~~Lia--IS---Qr~~~~---~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~D 242 (338)
-+|. .-.+|+-|-|- +|+++. +. |++... ++|. ...+++++++.+.... +...+.... +-+|
T Consensus 199 EefI---~~~~EisV~v~r~~~G~i~~~p~~E~~~~~~~~~~~~~Pa--~l~~~~~~~~~~~A~~-~~~aLg~~Gv~~vE 272 (577)
T PLN02948 199 EKWA---PFVKELAVMVARSRDGSTRCYPVVETIHKDNICHVVEAPA--NVPWKVAKLATDVAEK-AVGSLEGAGVFGVE 272 (577)
T ss_pred EecC---CCCeEEEEEEEECCCCCEEEecCcccEEECCeeEEEEECC--CCCHHHHHHHHHHHHH-HHHHhCCCeEEEEE
Confidence 6775 33577777665 454432 11 221100 1121 2345677777777663 334454333 3589
Q ss_pred EEecCCCcEEEEEecCCCCCcC
Q 019606 243 VYVTKDERVKILDFNPWGAFTL 264 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~~Td 264 (338)
++++.+++++++|+||=-..|+
T Consensus 273 ffv~~dG~v~v~EInpRpg~sG 294 (577)
T PLN02948 273 LFLLKDGQILLNEVAPRPHNSG 294 (577)
T ss_pred EEEcCCCcEEEEEEeCCCCCCC
Confidence 9999888999999999765444
No 48
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=64.38 E-value=19 Score=35.38 Aligned_cols=132 Identities=19% Similarity=0.211 Sum_probs=74.4
Q ss_pred HHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCCC
Q 019606 103 ESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLR 182 (338)
Q Consensus 103 ~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i~ 182 (338)
+.+|-.||.|=+... . .-+..+|++.+|+...++.... + ...+++-+|.
T Consensus 162 ~~l~~P~iVKP~~~g-----s--S~Gv~~v~~~~eL~~a~~~a~~--------~------------~~~vlVEe~I---- 210 (343)
T PRK14568 162 ATLTYPVFVKPARSG-----S--SFGVSKVNSADELDYAIESARQ--------Y------------DSKVLIEEAV---- 210 (343)
T ss_pred hhcCCCEEEEeCCCC-----C--CCCEEEeCCHHHHHHHHHHHHh--------c------------CCcEEEECCc----
Confidence 356666777744331 1 1234578888887665542110 1 1235666665
Q ss_pred CCceEEEEEeCC-e-EEE-----EeeCCccccchhhh-----------------ccHHHHHHHHHHHHHHHhhhhcCCCC
Q 019606 183 PEMEFRCFVRGR-C-LVG-----ISQREVTMCYPALS-----------------EKKNDIKVLIQELFDSNVRQEFESEN 238 (338)
Q Consensus 183 ps~EFRcFV~~~-~-Lia-----ISQr~~~~~y~~L~-----------------~~~~~i~~~I~~F~~~~i~~~~~~~~ 238 (338)
+.+||.|.|-++ . +.. |...+ .||++-. +..+++.+.|.+... .+...+....
T Consensus 211 ~G~E~sv~vl~~~~~~~~~~~~~i~~~~--~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~-~~~~~Lg~~G 287 (343)
T PRK14568 211 VGSEVGCAVLGNGADLVVGEVDQIRLSH--GFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAK-AIYRALGCRG 287 (343)
T ss_pred CCEEEEEEEEcCCCCcceecceEEecCC--CccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHH-HHHHHhCCCc
Confidence 368999998743 2 221 22111 2332210 112455566666655 3334455545
Q ss_pred c-eEEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 239 Y-TFDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 239 y-v~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+ -+|+.++.+++++|+|+||--+.|..-+|
T Consensus 288 ~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 288 LARVDMFLQEDGTVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred EEEEEEEEeCCCCEEEEEeeCCCCCCccCHH
Confidence 5 59999998899999999998776665454
No 49
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=63.70 E-value=1.1e+02 Score=35.12 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=76.3
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|-.|+.|=...+-. .+...|.+.+|+...++..-.. .....+++-+|
T Consensus 696 ~~~~~~~igyPvvVKP~~~~Gg-------~Gv~iv~~~eeL~~~~~~a~~~------------------s~~~~vlIEef 750 (1066)
T PRK05294 696 ALEVAEEIGYPVLVRPSYVLGG-------RAMEIVYDEEELERYMREAVKV------------------SPDHPVLIDKF 750 (1066)
T ss_pred HHHHHHhcCCCeEEEeCCCCCC-------CcEEEECCHHHHHHHHHHHHhh------------------CCCCcEEEEec
Confidence 4556678888888886544322 2345788888877665532210 01234677888
Q ss_pred CCCCCCCceEEEEEeCCe--EEEEeeCCccc---------cchhhhccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEEe
Q 019606 178 YPSLRPEMEFRCFVRGRC--LVGISQREVTM---------CYPALSEKKNDIKVLIQELFDSNVRQEFESEN-YTFDVYV 245 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~~~~--LiaISQr~~~~---------~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVyi 245 (338)
. .=....+..+++.++. +.+|.++.... .++- ....++....|.+... .|...+.... +-+|+.+
T Consensus 751 I-~G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gds~~~~p~-~~l~~~~~~~i~~~a~-~i~~aLg~~G~~~vqf~~ 827 (1066)
T PRK05294 751 L-EGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSLPP-QTLSEEIIEEIREYTK-KLALELNVVGLMNVQFAV 827 (1066)
T ss_pred C-CCCEEEEEEEEecCCeEEEeeeEEeeeeccccCCCCcEEecC-CCCCHHHHHHHHHHHH-HHHHHcCCeeeEEEEEEE
Confidence 7 3223666777654332 33555642110 1111 1223344455555544 3334455444 3488888
Q ss_pred cCCCcEEEEEecCCCCCcCC
Q 019606 246 TKDERVKILDFNPWGAFTLP 265 (338)
Q Consensus 246 ~~~~~v~LID~NPf~~~Td~ 265 (338)
+ ++++++||+||-..+|-+
T Consensus 828 ~-~~~~yViEiNpR~s~t~~ 846 (1066)
T PRK05294 828 K-DDEVYVIEVNPRASRTVP 846 (1066)
T ss_pred E-CCeEEEEEEecCCCccHH
Confidence 6 579999999996544433
No 50
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=62.05 E-value=49 Score=36.51 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=81.6
Q ss_pred HHHHHHHh-CCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 98 IKESIESL-GGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 98 I~~aI~~l-gG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
+.++++++ |..|+.|-+..+-.-+.-+.. .+.+..++...++. ++.. ...+++-+
T Consensus 515 a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~----~~~~~eel~~A~~~----------a~~~----------~~~vlVEE 570 (752)
T PRK02471 515 ALADYSLFADKAIVVKPKSTNFGLGISIFK----EPASLEDYEKALEI----------AFRE----------DSSVLVEE 570 (752)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcCCeEEec----CcCCHHHHHHHHHH----------HHhc----------CCcEEEEe
Confidence 34455664 567999976554443332210 13455555443321 1210 12356676
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhc-cHHHHHHHHHHHHHHHh------------------hhhcCCC
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSE-KKNDIKVLIQELFDSNV------------------RQEFESE 237 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~-~~~~i~~~I~~F~~~~i------------------~~~~~~~ 237 (338)
+. +..|+||+|-+++++|+.+|.. .++.. -+..|++.|..=-.+-. ...+...
T Consensus 571 fI----~G~E~Rv~Viggkvvaa~~R~p----a~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~q 642 (752)
T PRK02471 571 FI----VGTEYRFFVLDGKVEAVLLRVP----ANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQ 642 (752)
T ss_pred cc----cCCEEEEEEECCEEEEEEEEeC----CccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHc
Confidence 65 5899999999999999999976 33333 24455555544111101 1123345
Q ss_pred CceEEEEecCCCcEEEEEecCCCC------CcCCCccchHHHhh
Q 019606 238 NYTFDVYVTKDERVKILDFNPWGA------FTLPLLFAWEELQQ 275 (338)
Q Consensus 238 ~yv~DVyi~~~~~v~LID~NPf~~------~Td~lLFsW~el~~ 275 (338)
+|.+|=...++.+|+|-.-.-.+. .||-+-=++.++..
T Consensus 643 g~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~ 686 (752)
T PRK02471 643 GLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAV 686 (752)
T ss_pred CCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHH
Confidence 688887777777888876544432 45554445555554
No 51
>PRK12458 glutathione synthetase; Provisional
Probab=61.99 E-value=1e+02 Score=30.51 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCe-eeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEE
Q 019606 96 LKIKESIESLGGA-VFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLAL 174 (338)
Q Consensus 96 ~~I~~aI~~lgG~-vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvL 174 (338)
..+.+.++++||. |+.|---.+-.-+. .++++.++. -...+...+.. .-.+++
T Consensus 151 ~~~~~~~~~~~~~pvVvKPl~G~gG~gV-------~~v~~~~~~---------~~~~ile~~~~----------~~~~iv 204 (338)
T PRK12458 151 EYIREFLEESPGDKMILKPLQGSGGQGV-------FLIEKSAQS---------NLNQILEFYSG----------DGYVIA 204 (338)
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCccCe-------EEEecCChh---------hHHHHHHHHhh----------CCCEEE
Confidence 5578888899876 99996655433322 333322210 00111111110 114677
Q ss_pred eccCCCCCCCceEEEEEeCCeEE------EEeeC
Q 019606 175 RKWYPSLRPEMEFRCFVRGRCLV------GISQR 202 (338)
Q Consensus 175 rkW~~~i~ps~EFRcFV~~~~Li------aISQr 202 (338)
-+|.+.. ...+-|+||-||+++ |+-.|
T Consensus 205 QeyI~~~-~~gDiRv~vv~g~~v~~~g~~~a~~R 237 (338)
T PRK12458 205 QEYLPGA-EEGDVRILLLNGEPLERDGHYAAMRR 237 (338)
T ss_pred EEcccCC-CCCCEEEEEECCEEEeeccceeEEEE
Confidence 8888433 468999999999999 87555
No 52
>PLN02735 carbamoyl-phosphate synthase
Probab=61.06 E-value=96 Score=35.81 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=80.3
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|-.|++|=.... .+. +...|++.+|+-..++..... . ....+++-+|
T Consensus 729 a~~~a~~iGyPvvVKP~~g~--gG~-----G~~iV~~~eeL~~al~~a~~~------------~------~~~~vlVEef 783 (1102)
T PLN02735 729 ALAIAKRIGYPVVVRPSYVL--GGR-----AMEIVYSDDKLKTYLETAVEV------------D------PERPVLVDKY 783 (1102)
T ss_pred HHHHHHhcCCCeEEEeCCCC--CCC-----cEEEECCHHHHHHHHHHHHHh------------c------CCCCEEEEEe
Confidence 44566788888888876532 211 345788888876555432221 0 0123567777
Q ss_pred CCCCCCCceEEEEEe-C--CeEE--EEeeCCc---------cccchhhhccHHHHHHHHHHHHHHHhhhhcCCCCc-eEE
Q 019606 178 YPSLRPEMEFRCFVR-G--RCLV--GISQREV---------TMCYPALSEKKNDIKVLIQELFDSNVRQEFESENY-TFD 242 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~-~--~~Li--aISQr~~---------~~~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~D 242 (338)
. ....|+-|-|- + |+++ +|.++.. ...+|. ....+++++.|.+.-. .|...+....+ -+|
T Consensus 784 I---~~g~Ei~V~vl~D~~G~vv~~~i~e~~~~~gvhsGds~~~~P~-~~L~~e~~~~i~~~a~-ki~~~L~~~G~~~vq 858 (1102)
T PLN02735 784 L---SDATEIDVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSLPT-QTIPSSCLATIRDWTT-KLAKRLNVCGLMNCQ 858 (1102)
T ss_pred c---CCcEEEEEEEEECCCCCEEEecceEeeeccCccCCCccEEecC-CCCCHHHHHHHHHHHH-HHHHHcCCcceeeEE
Confidence 5 33567777653 2 3444 3444321 111221 1233556666666555 35556665444 589
Q ss_pred EEecCCCcEEEEEecCCCCCcCCC
Q 019606 243 VYVTKDERVKILDFNPWGAFTLPL 266 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~~Td~l 266 (338)
+.+++++++++||+||-..+|-|.
T Consensus 859 f~v~~dg~~yviEiNpR~s~t~p~ 882 (1102)
T PLN02735 859 YAITPSGEVYIIEANPRASRTVPF 882 (1102)
T ss_pred EEEcCCCcEEEEEEeCCCCccHHH
Confidence 999877899999999987655553
No 53
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=56.46 E-value=15 Score=39.16 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=55.8
Q ss_pred hhhhccHHHHHHHHHHHHHHHhhhhcC-------------CCCceEEEEec--CCCcEEEEEecCCC-----CCcCCCcc
Q 019606 209 PALSEKKNDIKVLIQELFDSNVRQEFE-------------SENYTFDVYVT--KDERVKILDFNPWG-----AFTLPLLF 268 (338)
Q Consensus 209 ~~L~~~~~~i~~~I~~F~~~~i~~~~~-------------~~~yv~DVyi~--~~~~v~LID~NPf~-----~~Td~lLF 268 (338)
.|+.++.+++..+|.+-+. .++.+-| ++-|-||.++- .|+.-+-+-++|=| +.+-..||
T Consensus 156 Rf~p~Qte~LE~~I~e~hK-~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~kig~f 234 (616)
T KOG3530|consen 156 RFLPNQTEELEERIFELHK-ELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKKIGLF 234 (616)
T ss_pred EecccccHHHHHHHHHHHH-HhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCceeeEE
Confidence 3555566666666666665 2333322 57789998876 45777888888866 57888999
Q ss_pred chHHHhhhcCCCCCcceEEEecCC
Q 019606 269 AWEELQQNVGEEGDDVEFRIVESQ 292 (338)
Q Consensus 269 sW~el~~~~~~~~~~~efR~v~~~ 292 (338)
-|.+|..+... +..+.+|+++++
T Consensus 235 ~WpkI~KvdFk-~kk~~L~v~edd 257 (616)
T KOG3530|consen 235 FWPKITKVDFK-GKKFTLVVSEDD 257 (616)
T ss_pred ecchheEeecc-CcEEEEEEeecc
Confidence 99999987654 235566666554
No 54
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=52.90 E-value=61 Score=34.30 Aligned_cols=77 Identities=13% Similarity=0.080 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.+.++++| .|+.|- .++.|=. +-++.+++.+++...+..- +.. ...+++-+
T Consensus 323 ~~~~~~~~~G-~vVVKP-----~~G~~G~-Gv~v~v~~~~eL~~a~~~a----------~~~----------~~~vlvEe 375 (547)
T TIGR03103 323 AVEAFLAEHG-AVVVKP-----VRGEQGK-GISVDVRTPDDLEAAIAKA----------RQF----------CDRVLLER 375 (547)
T ss_pred HHHHHHHHhC-CEEEEE-----CCCCCCc-CeEEecCCHHHHHHHHHHH----------Hhc----------CCcEEEEE
Confidence 4667778888 599994 4433210 1122356666654444321 111 11356666
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeCCc
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQREV 204 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr~~ 204 (338)
+. +..|+||+|-+++++|+..|..
T Consensus 376 ~i----~G~d~Rv~Vigg~vvaa~~R~~ 399 (547)
T TIGR03103 376 YV----PGEDLRLVVIDFEVVAAAVRRP 399 (547)
T ss_pred ec----cCCeEEEEEECCEEEEEEEecC
Confidence 65 5789999999999999999975
No 55
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=49.16 E-value=3.9e+02 Score=30.74 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=74.3
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-.. +...|++.+|+-..++. ++.. .....+++-+
T Consensus 154 e~~~~~~~ig~PvVVKP~~g~gg~-------Gv~iv~~~eeL~~a~~~----------~~~~--------s~~~~vlvEe 208 (1066)
T PRK05294 154 EALEVAEEIGYPVIIRPSFTLGGT-------GGGIAYNEEELEEIVER----------GLDL--------SPVTEVLIEE 208 (1066)
T ss_pred HHHHHHHHcCCCeEEEcCCCCCCC-------CeEEECCHHHHHHHHHH----------HHhh--------CCCCeEEEEE
Confidence 355677889989999976433222 34568888887654432 1110 0113467777
Q ss_pred cCCCCCCCceEEEEEe-CCeEEEEeeC-Cc------cc----cchhhhccHHHHHHHHHHHHHHHhhhhcCCC--CceEE
Q 019606 177 WYPSLRPEMEFRCFVR-GRCLVGISQR-EV------TM----CYPALSEKKNDIKVLIQELFDSNVRQEFESE--NYTFD 242 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~~~LiaISQr-~~------~~----~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~--~yv~D 242 (338)
|. .-....++-++.- +++.+.++-. +. +. ..|.. ...+.....+.+... +|...+... -+-+|
T Consensus 209 ~I-~G~~Eisv~v~rd~~g~~~~~~~~e~~dp~gih~g~~~~~~Pa~-~l~~~~~~~l~~~a~-ki~~aLg~~~G~~~ve 285 (1066)
T PRK05294 209 SL-LGWKEYEYEVMRDKNDNCIIVCSIENIDPMGVHTGDSITVAPAQ-TLTDKEYQMLRDASI-AIIREIGVETGGCNVQ 285 (1066)
T ss_pred cc-cCceEEEEEEEEcCCCCEEEEeeeeeccccceecCCeEEEeCCC-CCCHHHHHHHHHHHH-HHHHHcCCccCceEEE
Confidence 76 3333334433321 3445544421 11 00 01110 112344455555554 344456544 34599
Q ss_pred EEecC-CCcEEEEEecCCCCCc
Q 019606 243 VYVTK-DERVKILDFNPWGAFT 263 (338)
Q Consensus 243 Vyi~~-~~~v~LID~NPf~~~T 263 (338)
+.+++ +++++++|+||=-..+
T Consensus 286 f~~~~~~g~~~viEiNPR~~~s 307 (1066)
T PRK05294 286 FALNPKDGRYIVIEMNPRVSRS 307 (1066)
T ss_pred EEEECCCCcEEEEEeecCCCcc
Confidence 99984 5789999999965443
No 56
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=46.81 E-value=18 Score=34.41 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=17.6
Q ss_pred ceEEEEecCCCcEEEEEecCCC
Q 019606 239 YTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 239 yv~DVyi~~~~~v~LID~NPf~ 260 (338)
|-||+.|+.+.++||||+|.--
T Consensus 239 ~G~DfmlD~~~kpwLLEvN~~P 260 (292)
T PF03133_consen 239 FGFDFMLDEDLKPWLLEVNSNP 260 (292)
T ss_dssp EEEEEEEBTTS-EEEEEEESS-
T ss_pred eeeEEEecCCCeEEEeeCCCCC
Confidence 4689999999999999999743
No 57
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=45.78 E-value=2.6e+02 Score=27.51 Aligned_cols=136 Identities=14% Similarity=0.088 Sum_probs=71.9
Q ss_pred HHHHhCCeeeeecccCCCCcccccccCCcccccCHH-HHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCC
Q 019606 101 SIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFC-EIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYP 179 (338)
Q Consensus 101 aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~-DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~ 179 (338)
+-+.+|+.|..|---.|-... -.+|++.+ ++..++....- .....++..+|.
T Consensus 150 ~~~~~g~pvVlKp~~Gs~G~g-------V~~v~~~d~~l~~~~e~~~~-------------------~~~~~~ivQeyi- 202 (318)
T COG0189 150 VAEHLGFPVVLKPLDGSGGRG-------VFLVEDADPELLSLLETLTQ-------------------EGRKLIIVQEYI- 202 (318)
T ss_pred HHHhcCCCEEEeeCCCCCccc-------eEEecCCChhHHHHHHHHhc-------------------cccceEehhhhc-
Confidence 335677889998554444433 35666666 55444433221 001133444454
Q ss_pred CCCCCceEEEEEeCCeEEEE-e-eCCc-cccch-hhhc----cHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCCCcE
Q 019606 180 SLRPEMEFRCFVRGRCLVGI-S-QREV-TMCYP-ALSE----KKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERV 251 (338)
Q Consensus 180 ~i~ps~EFRcFV~~~~LiaI-S-Qr~~-~~~y~-~L~~----~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~~~~v 251 (338)
.-...-==||+|.++.++|+ + ||-. ..-|. .+.. ...++-..+.+.-. ++.+.+...=+-+||.-+ ++..
T Consensus 203 ~~~~~~~rrivv~~~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e~~~l~~e~~elA~-kaa~~lGl~~~GVDiie~-~~g~ 280 (318)
T COG0189 203 PKAKRDDRRVLVGGGEVVAIYALARIPASGDFRSNLARGGRAEPCELTEEEEELAV-KAAPALGLGLVGVDIIED-KDGL 280 (318)
T ss_pred CcccCCcEEEEEeCCEEeEEeeeccccCCCCceeeccccccccccCCCHHHHHHHH-HHHHHhCCeEEEEEEEec-CCCc
Confidence 22222334777788999997 3 5522 11221 1110 01112222222222 455667777778999988 5799
Q ss_pred EEEEecCCCCCcCCC
Q 019606 252 KILDFNPWGAFTLPL 266 (338)
Q Consensus 252 ~LID~NPf~~~Td~l 266 (338)
+++|+|+ .+.....
T Consensus 281 ~V~EVN~-sP~~~~~ 294 (318)
T COG0189 281 YVTEVNV-SPTGKGE 294 (318)
T ss_pred EEEEEeC-CCccccc
Confidence 9999999 6644443
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=44.39 E-value=5.5e+02 Score=29.59 Aligned_cols=138 Identities=10% Similarity=0.111 Sum_probs=72.0
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|-.|+.|=...+-.. +...|++.+|+...++.. +.. . ....+++-+
T Consensus 154 e~~~~~~~igyPvVVKP~~g~gG~-------Gv~iv~~~eEL~~a~~~~----------~~~-------s-~~~~vLVEe 208 (1068)
T PRK12815 154 EALAFAEKIGFPIIVRPAYTLGGT-------GGGIAENLEELEQLFKQG----------LQA-------S-PIHQCLLEE 208 (1068)
T ss_pred HHHHHHHHcCCCEEEEECcCCCCC-------ceEEECCHHHHHHHHHHH----------Hhc-------C-CCCeEEEEE
Confidence 345677888988999977655433 335688888866544321 100 0 112456666
Q ss_pred cCCCCCCCceEEEEE-e--CCeEEEEeeC-Ccc-c---------cchhhhccHHHHHHHHHHHHHHHhhhhcCC-CCceE
Q 019606 177 WYPSLRPEMEFRCFV-R--GRCLVGISQR-EVT-M---------CYPALSEKKNDIKVLIQELFDSNVRQEFES-ENYTF 241 (338)
Q Consensus 177 W~~~i~ps~EFRcFV-~--~~~LiaISQr-~~~-~---------~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~ 241 (338)
|. .- ..|+=+-| + +++++.++-. +.. . ..|.. ...+.....+.+... +|...+.. .-+-+
T Consensus 209 ~I-~G--~~E~sv~v~rD~~g~~~~~~~~e~~~p~gi~tG~s~~v~Pa~-~l~~~~~~~l~~~a~-ki~~~Lg~~G~~~v 283 (1068)
T PRK12815 209 SI-AG--WKEIEYEVMRDRNGNCITVCNMENIDPVGIHTGDSIVVAPSQ-TLTDDEYQMLRSASL-KIISALGVVGGCNI 283 (1068)
T ss_pred cc-CC--CeEEEEEEEEcCCCCEEEEEeceecccccccCCceEEEecCC-CCCHHHHHHHHHHHH-HHHHHcCCCCceEE
Confidence 66 32 33444443 2 3455544321 110 0 01110 112333344444444 23334443 44568
Q ss_pred EEEecCC-CcEEEEEecCCCCCcC
Q 019606 242 DVYVTKD-ERVKILDFNPWGAFTL 264 (338)
Q Consensus 242 DVyi~~~-~~v~LID~NPf~~~Td 264 (338)
++.++++ ++++|+|+||=-.++.
T Consensus 284 ef~l~~~~g~~~ViEINPR~~~s~ 307 (1068)
T PRK12815 284 QFALDPKSKQYYLIEVNPRVSRSS 307 (1068)
T ss_pred EEEEECCCCcEEEEEEecCcccch
Confidence 9999865 7899999999654443
No 59
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=40.05 E-value=3.6e+02 Score=26.14 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 96 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
..+.+.++++| .|..|---.+-.-+.+....+. .+...+. +.+ ..- ....+++-
T Consensus 144 ~~~~~~~~~~g-~vVvKPl~G~~G~gv~~v~~~~---~~~~~~~----------~~~----~~~--------~~~~~~vQ 197 (312)
T TIGR01380 144 AEIRAFLAEHG-DIVLKPLDGMGGEGIFRLDPGD---PNFNSIL----------ETM----TQR--------GREPVMAQ 197 (312)
T ss_pred HHHHHHHHHcC-CEEEEECCCCCCceEEEEcCCC---ccHHHHH----------HHH----Hhc--------cCCcEEEE
Confidence 45778888888 6888876665554444321111 0011111 111 100 01246778
Q ss_pred ccCCCCCCCceEEEEEeCCeEEE-EeeCC-----c-ccc-c------hhhhccHHHHHHHHHHHHHHHhhhhcCCCCceE
Q 019606 176 KWYPSLRPEMEFRCFVRGRCLVG-ISQRE-----V-TMC-Y------PALSEKKNDIKVLIQELFDSNVRQEFESENYTF 241 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~~~~Lia-ISQr~-----~-~~~-y------~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv~ 241 (338)
++.+.. +..+.|+||-||+++| .-.|- + +|. + -.|.+...+|..++..... .....-.-+
T Consensus 198 ~yI~~~-~~~D~Rv~vv~g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~-----~~gl~~agV 271 (312)
T TIGR01380 198 RYLPEI-KEGDKRILLIDGEPIGAAVARIPAGGEFRGNLAVGGRGEATELSERDREICADVAPELK-----RRGLLFVGI 271 (312)
T ss_pred eccccc-cCCCEEEEEECCeEEEEEEEecCCCCCccccccCCceeeccCCCHHHHHHHHHHHHHHH-----hcCCcEEEE
Confidence 887433 4589999999999887 33332 1 110 0 0022222345554444332 234444468
Q ss_pred EEEecCCCcEEEEEecCCCC
Q 019606 242 DVYVTKDERVKILDFNPWGA 261 (338)
Q Consensus 242 DVyi~~~~~v~LID~NPf~~ 261 (338)
|+.- -+|+|+|+.++
T Consensus 272 Diig-----~~v~EvN~~~p 286 (312)
T TIGR01380 272 DVIG-----GYLTEVNVTSP 286 (312)
T ss_pred EEeC-----CEEEEEecCCc
Confidence 8772 25999998653
No 60
>PF14332 DUF4388: Domain of unknown function (DUF4388)
Probab=38.08 E-value=1.3e+02 Score=23.72 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=35.8
Q ss_pred CcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCCCCCceEEEEEeCCeEEEEeeC
Q 019606 128 GTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQR 202 (338)
Q Consensus 128 ~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr 202 (338)
++|+-.++.||+.+|..+.+ +-.|.+. .+..+-|+|+++|+|+.++-.
T Consensus 2 G~L~~~~l~dlLq~l~~~~k---------------------tG~L~v~------~~~~~~~i~f~~G~iv~A~~~ 49 (103)
T PF14332_consen 2 GDLSDFSLPDLLQLLEQSRK---------------------TGVLEVQ------SGGGEGRIYFRDGRIVHASSG 49 (103)
T ss_pred cccccCCHHHHHHHHHhcCC---------------------eEEEEEE------eCCcEEEEEEECCEEEEEEeC
Confidence 56777788888888877665 2345552 456678899999999998876
No 61
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=38.03 E-value=4.2e+02 Score=26.40 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=75.9
Q ss_pred HHHHHHHHHhCC---eeeeecccCCCCcccccccCCcccccCHHHHHHHh-hcchhHHHHHh-hhhhhcCCCCCCCCCce
Q 019606 96 LKIKESIESLGG---AVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLL-RSSDSLVHDLC-HAYDSCNDKTLTRPPSF 170 (338)
Q Consensus 96 ~~I~~aI~~lgG---~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLL-ksS~~i~~DL~-~~~~~~~d~~~~~~~~~ 170 (338)
++++.|+++++- .+-.|---..-.-+-|+... +....=.++ ..|..|.-|.. +++..+. ...
T Consensus 132 ~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~------~~~~l~~l~~~~~~~i~~~~~~~~l~~~~-------~~~ 198 (329)
T PF15632_consen 132 DELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDE------SRDELDALFEPDSRRISLDELLAALQRSE-------EFP 198 (329)
T ss_pred HHHHHHHHhcCCCCceEEEecccCCCcceEEEEcc------CcchHHHhcCCCcceeCHHHHHHHHhccC-------CCC
Confidence 446677777643 37777666555556666521 222222232 34555544432 2233221 234
Q ss_pred EEEEeccCCCCCCCceE--EEEEeCCeEEEEeeCCccccchhhhccHHHHHHHHHHHHHHHhhhhcCCCCceEEEEe--c
Q 019606 171 FLALRKWYPSLRPEMEF--RCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYV--T 246 (338)
Q Consensus 171 ~LvLrkW~~~i~ps~EF--RcFV~~~~LiaISQr~~~~~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi--~ 246 (338)
-++|.+|- |.-|+ -|-+..|+++++=+|-=..+...|.... ++.+ +-. .|...|.. +++|-|=. +
T Consensus 199 ~llvMeyL----~G~EySVD~l~~~G~viaaV~R~K~G~~q~l~~~~-~l~e----~a~-~l~~~~~l-~g~~NiQ~r~d 267 (329)
T PF15632_consen 199 PLLVMEYL----PGPEYSVDCLADEGRVIAAVPRRKLGRRQVLENDE-ELIE----LAR-RLAEAFGL-DGLFNIQFRYD 267 (329)
T ss_pred CcEEecCC----CCCeEEEEEEecCCEEEEEEEEEecCceeEEEECH-HHHH----HHH-HHHHHhCC-CceEEEEEEEc
Confidence 67788775 45555 5777899999777776544444444332 2222 222 33334443 44554444 4
Q ss_pred CCCcEEEEEecCC
Q 019606 247 KDERVKILDFNPW 259 (338)
Q Consensus 247 ~~~~v~LID~NPf 259 (338)
.+++.+|+||||=
T Consensus 268 ~~g~p~LLEINpR 280 (329)
T PF15632_consen 268 EDGNPKLLEINPR 280 (329)
T ss_pred CCCCEEEEEeCCC
Confidence 5599999999994
No 62
>PRK05246 glutathione synthetase; Provisional
Probab=34.69 E-value=2.7e+02 Score=26.94 Aligned_cols=127 Identities=14% Similarity=0.043 Sum_probs=68.2
Q ss_pred HHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 96 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
+.+.+.++++| .|+.|--..+-.-+......+. .+...++ +.+ ... .....++-
T Consensus 145 ~~~~~~~~~~~-~vVlKP~~G~~G~gV~~i~~~~---~~~~~~~----------~~l----~~~--------~~~~~lvQ 198 (316)
T PRK05246 145 AEIRAFRAEHG-DIILKPLDGMGGAGIFRVKADD---PNLGSIL----------ETL----TEH--------GREPVMAQ 198 (316)
T ss_pred HHHHHHHHHCC-CEEEEECCCCCccceEEEeCCC---ccHHHHH----------HHH----HHc--------cCCeEEEE
Confidence 35777788887 7899877766555443321110 1111111 111 110 11246788
Q ss_pred ccCCCCCCCceEEEEEeCCeEEE-EeeCCccccchh--------------hhccHHHHHHHHHHHHHHHhhhhcCCCCce
Q 019606 176 KWYPSLRPEMEFRCFVRGRCLVG-ISQREVTMCYPA--------------LSEKKNDIKVLIQELFDSNVRQEFESENYT 240 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~~~~Lia-ISQr~~~~~y~~--------------L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv 240 (338)
++. ......+.|++|-||+++| .-.|--.. =+| |.+...+|..++..... .....-.-
T Consensus 199 ~~I-~~~~~~D~Rv~vv~g~vv~~a~~R~~~~-~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~-----~~gl~~~G 271 (316)
T PRK05246 199 RYL-PEIKEGDKRILLVDGEPVGYALARIPAG-GETRGNLAAGGRGEATPLTERDREICAAIGPELK-----ERGLIFVG 271 (316)
T ss_pred ecc-ccCCCCCEEEEEECCEEhhheeEecCCC-CCcccCccCCceEeccCCCHHHHHHHHHHHHHHH-----HhCCCEEE
Confidence 887 3333579999999999998 55563211 111 12222355555554443 22333346
Q ss_pred EEEEecCCCcEEEEEecCCC
Q 019606 241 FDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 241 ~DVyi~~~~~v~LID~NPf~ 260 (338)
+|+.-+ +|+|+|+..
T Consensus 272 VDli~~-----~l~EvN~~~ 286 (316)
T PRK05246 272 IDVIGD-----YLTEINVTS 286 (316)
T ss_pred EEEeCC-----EEEEEeCCC
Confidence 888621 799999743
No 63
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.82 E-value=7.5e+02 Score=28.55 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=73.8
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|-.|+.|=...+-.- +...|.+.+|+...++.. . . ....+++-+|
T Consensus 697 ~~~~~~~igyPvVVKP~~~~Gg~-------gv~iv~~~eeL~~~l~~~----------~----s------~~~~vlIeef 749 (1068)
T PRK12815 697 AFAFAKRIGYPVLIRPSYVIGGQ-------GMAVVYDEPALEAYLAEN----------A----S------QLYPILIDQF 749 (1068)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCC-------CEEEECCHHHHHHHHHHh----------h----c------CCCCEEEEEe
Confidence 44556777877888865543222 335677887776555432 0 0 1123577777
Q ss_pred CCCCCCCceEEEEEeCCe--EEEEeeCCccc--c-chh---h--hccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEEec
Q 019606 178 YPSLRPEMEFRCFVRGRC--LVGISQREVTM--C-YPA---L--SEKKNDIKVLIQELFDSNVRQEFESEN-YTFDVYVT 246 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~~~~--LiaISQr~~~~--~-y~~---L--~~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVyi~ 246 (338)
.+ ....++-+++.++. +.+|.++--.. + .+. + ..........|.++.. +|...+.... +-+|+.++
T Consensus 750 I~--G~E~~Vd~i~dg~~v~i~~i~e~~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~-ki~~~L~~~G~~niqf~v~ 826 (1068)
T PRK12815 750 ID--GKEYEVDAISDGEDVTIPGIIEHIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAI-KIAKKLGFRGIMNIQFVLA 826 (1068)
T ss_pred ec--CceEEEEEEEcCCceEEeeEEEEeeccCCcCCCeeEEECCCCCCHHHHHHHHHHHH-HHHHHcCCccEEEEEEEEE
Confidence 62 24566677655443 33454421100 0 010 1 0122344455555554 3444555444 34887776
Q ss_pred CCCcEEEEEecCCCCCcCC
Q 019606 247 KDERVKILDFNPWGAFTLP 265 (338)
Q Consensus 247 ~~~~v~LID~NPf~~~Td~ 265 (338)
. +++++||+||-..+|-+
T Consensus 827 ~-~~~yviEiNpR~s~t~~ 844 (1068)
T PRK12815 827 N-DEIYVLEVNPRASRTVP 844 (1068)
T ss_pred C-CcEEEEEEeCCCCccHH
Confidence 4 68999999998765544
No 64
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=32.77 E-value=69 Score=31.35 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=27.6
Q ss_pred hcC-CCCce-EEEEecCCCcEEEEEecCCCCCcCCCcc---chHHHhhhcC
Q 019606 233 EFE-SENYT-FDVYVTKDERVKILDFNPWGAFTLPLLF---AWEELQQNVG 278 (338)
Q Consensus 233 ~~~-~~~yv-~DVyi~~~~~v~LID~NPf~~~Td~lLF---sW~el~~~~~ 278 (338)
.++ +..|| +|+.+. +..++||+||=- +|--.=+ +=..+.+++-
T Consensus 229 ci~Gl~GYVGVDlVls--D~pYvIEINpR~-TTp~vg~sr~~~~sv~~LLl 276 (307)
T COG1821 229 CIPGLNGYVGVDLVLS--DEPYVIEINPRP-TTPTVGLSRVTPESVAELLL 276 (307)
T ss_pred hhccccceeeEEEEec--CCcEEEEecCCC-CcceeeeeccccHHHHHHHh
Confidence 355 66776 899997 789999999943 3332222 3445555443
No 65
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=31.77 E-value=1.3e+02 Score=29.68 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHHHHhhhhcC-CCCceEEEEecC-CCcEEEEEecCCCCCcCCCcc
Q 019606 214 KKNDIKVLIQELFDSNVRQEFE-SENYTFDVYVTK-DERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 214 ~~~~i~~~I~~F~~~~i~~~~~-~~~yv~DVyi~~-~~~v~LID~NPf~~~Td~lLF 268 (338)
..+++...|++...+ +-..+. ..-.=+|+.++. .++++|+|+|+--+.|.--||
T Consensus 239 lt~~~~~~i~~lA~~-a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~ 294 (317)
T COG1181 239 LTDEIHEEIKELALR-AYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLF 294 (317)
T ss_pred CCHHHHHHHHHHHHH-HHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccc
Confidence 457788888888773 444566 444568999987 689999999998876777776
No 66
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=30.85 E-value=4.3e+02 Score=24.32 Aligned_cols=146 Identities=15% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++.+++|-.|..|-..---. .+.-.|.+.+++--.+....+... .+|.. ..+++-|+
T Consensus 30 a~~~a~~iGyPVliKas~ggGG-------~gm~iv~~~~eL~~~~~~~~~~s~---~~fg~-----------~~v~iek~ 88 (211)
T PF02786_consen 30 ALEFAEEIGYPVLIKASAGGGG-------RGMRIVHNEEELEEAFERAQRESP---AAFGD-----------GPVLIEKF 88 (211)
T ss_dssp HHHHHHHH-SSEEEEETTSSTT-------TSEEEESSHHHHHHHHHHHHHHHH---HHHST-----------S-EEEEE-
T ss_pred HHHHHHhcCCceEEeecccccc-------cccccccchhhhhhhhhhccccCc---ccccc-----------ceEEEeee
Confidence 5566678886677664332211 233568899988877765544432 22421 23445555
Q ss_pred CCCCCCCceEEEEEe-CCeEEEEeeCCccc--cc-hhhh-----ccHHHHHHHHHHHHHHHhhhhcCCC-CceEEEEecC
Q 019606 178 YPSLRPEMEFRCFVR-GRCLVGISQREVTM--CY-PALS-----EKKNDIKVLIQELFDSNVRQEFESE-NYTFDVYVTK 247 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~-~~~LiaISQr~~~~--~y-~~L~-----~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVyi~~ 247 (338)
. .=....|+-+.-- .|..+.++-|++.. +. +.++ ...+++++.|.+.-. +|...+... -+.+-+.+..
T Consensus 89 i-~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~-~ia~~l~~~G~~tvef~~~~ 166 (211)
T PF02786_consen 89 I-EGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAK-KIARALGYVGAGTVEFAVDP 166 (211)
T ss_dssp --SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHH-HHHHHTT-EEEEEEEEEEET
T ss_pred h-hhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHH-HHHHhhCeeecceEEEEEcc
Confidence 5 2223455555543 34566666555521 11 1111 124567777777665 444555432 3356667775
Q ss_pred -CCcEEEEEecCCCCCcCCC
Q 019606 248 -DERVKILDFNPWGAFTLPL 266 (338)
Q Consensus 248 -~~~v~LID~NPf~~~Td~l 266 (338)
++++++||+||...++.|.
T Consensus 167 ~~~~~y~lEvNpR~~~~~p~ 186 (211)
T PF02786_consen 167 DDGEFYFLEVNPRLQREHPV 186 (211)
T ss_dssp TTTEEEEEEEESS--TTHHH
T ss_pred CccceeeecccCCCCCcchH
Confidence 6999999999998876654
No 67
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=30.32 E-value=2.9e+02 Score=27.45 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEEecCCCcEEEEEecCCCCCc
Q 019606 220 VLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFNPWGAFT 263 (338)
Q Consensus 220 ~~I~~F~~~~i~~~~~~~~yv~DVyi~~~~~v~LID~NPf~~~T 263 (338)
..+.+... .....++..-+-+|+.++.++..+|+|+|+-.+.|
T Consensus 231 ~el~~la~-~A~~~~g~~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 231 ERLLELAA-SCWELTGLGYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred HHHHHHHH-HHHHhcCCCeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 34444444 23335666555699999877899999999987766
No 68
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=29.64 E-value=1.3e+02 Score=30.68 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCceEEEEecCCCcEEEEEecCCC
Q 019606 236 SENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 236 ~~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
...|.+|+.++.++.++++|+||=-
T Consensus 295 iGpf~lQ~iv~~d~~~~V~EInpR~ 319 (366)
T PRK13277 295 IGPFTLQTIVTPDLDFVVYDVAPRI 319 (366)
T ss_pred ccceEEEEEEcCCCcEEEEEEcCCc
Confidence 6788999999988999999999853
No 69
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=27.34 E-value=6.3e+02 Score=25.13 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=69.4
Q ss_pred HHHHHHHHhCCe-eeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 97 KIKESIESLGGA-VFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 97 ~I~~aI~~lgG~-vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
.+.++++++|.. |+.|-.-.+-. .+...|.+.+|+...++.--. ..|. . ....+++-
T Consensus 130 ~~~~~~~~~g~P~~VvKp~~~~gg-------~Gv~~v~~~~el~~~~~~~~~------~~~g--------~-~~~~~lvE 187 (423)
T TIGR00877 130 EALSYIQEKGAPAIVVKADGLAAG-------KGVIVAKTNEEAIKAVEEILE------QKFG--------D-AGERVVIE 187 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCCCCC-------CCEEEECCHHHHHHHHHHHHH------HhcC--------C-CCCeEEEE
Confidence 366777888877 89885432211 245678888887654432110 0010 0 11246778
Q ss_pred ccCCCCCCCceEEEEEe-CC-e--EEEEeeCCcccc---------------ch--hhh-ccHHHHHHHHHHHHHHHhhh-
Q 019606 176 KWYPSLRPEMEFRCFVR-GR-C--LVGISQREVTMC---------------YP--ALS-EKKNDIKVLIQELFDSNVRQ- 232 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~-~~-~--LiaISQr~~~~~---------------y~--~L~-~~~~~i~~~I~~F~~~~i~~- 232 (338)
+|. + ..||-+.+- ++ . +++++|... .. .+ .+. +...++...|.+-..+.+..
T Consensus 188 e~i-~---G~E~sv~~~~dg~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~ 262 (423)
T TIGR00877 188 EFL-D---GEEVSLLAFVDGKTVIPMPPAQDHK-RALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKE 262 (423)
T ss_pred ECc-c---CceEEEEEEEcCCeEEeceeeeeee-ecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 787 3 357776553 33 3 335555431 11 11 121 11223333333322222221
Q ss_pred hcC-CCCceEEEEecCCCcEEEEEecCCC
Q 019606 233 EFE-SENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 233 ~~~-~~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
.++ ..-+-+|+.++.++ ++|+|+||=-
T Consensus 263 ~~~~~G~~~ie~~~t~~g-~~viEin~R~ 290 (423)
T TIGR00877 263 GTPYKGVLYAGLMLTKEG-PKVLEFNCRF 290 (423)
T ss_pred CCCcEeEEEEEEEEECCC-cEEEEEEccC
Confidence 122 23467899998765 9999999964
No 70
>PHA02552 4 head completion protein; Provisional
Probab=24.49 E-value=49 Score=29.48 Aligned_cols=55 Identities=18% Similarity=0.401 Sum_probs=39.2
Q ss_pred CceEEEEec-CCCcEEEEEecCCCCCcCC----------------CccchHHHhhhcC-----CCCCcceEEEecCC
Q 019606 238 NYTFDVYVT-KDERVKILDFNPWGAFTLP----------------LLFAWEELQQNVG-----EEGDDVEFRIVESQ 292 (338)
Q Consensus 238 ~yv~DVyi~-~~~~v~LID~NPf~~~Td~----------------lLFsW~el~~~~~-----~~~~~~efR~v~~~ 292 (338)
.|+-|+++. .+++..|||+-|....-+| -+.+|.++..... -.....+|+|+++.
T Consensus 64 ~Y~PDFLV~~~dG~~~lvEVKp~~~~~~p~~~~~~~~~~~~~~~~~~~~w~~~~~K~~Aa~~~a~~~Gw~F~iiTE~ 140 (151)
T PHA02552 64 RYFMDFYVKVDNGQKFLIEVKPKKETQPPKKPAKMTTAAKKRFINEVYTWSVNTDKWKAARALCEKKGWKFKIITED 140 (151)
T ss_pred eEcCcEEEEEeCCCEEEEEEccHHHccCcccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHcCCEEEEEEHH
Confidence 788888876 5578999999998854434 3579998776321 11335799999876
No 71
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=24.16 E-value=49 Score=30.48 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=16.7
Q ss_pred eeecCCHhHHHHHhcCCCCeEc
Q 019606 29 LIHELPEYFVEYLLDDSGPFLL 50 (338)
Q Consensus 29 ~ii~Lp~~fl~YL~sDg~~i~L 50 (338)
..-+||+++|+|++..| |.+
T Consensus 95 ~k~~LPddVI~YmrdNg--I~V 114 (196)
T PRK15364 95 TKEEVPEDVIKYMRDNG--ILI 114 (196)
T ss_pred ccccCCHHHHHHHHHcC--cee
Confidence 34589999999999999 754
No 72
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=23.93 E-value=3.3e+02 Score=20.78 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=34.8
Q ss_pred eEEEEeeCCccccc--hhhhccHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCCCcEEEEEec
Q 019606 195 CLVGISQREVTMCY--PALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFN 257 (338)
Q Consensus 195 ~LiaISQr~~~~~y--~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~~~~v~LID~N 257 (338)
+++-+++|.- ..- ++|...+.+|.+.|..|+. +...+ ++|.+.+++..-++++|
T Consensus 10 k~iL~~dR~~-~~~~~~~l~~lk~eil~viskYv~------i~~~~--v~v~l~~~~~~~~L~~n 65 (70)
T PF03776_consen 10 KLILAHDRGG-LSPQPDYLEQLKKEILEVISKYVE------IDEED--VEVQLERDDDMSVLEAN 65 (70)
T ss_dssp EEEEEEECCS-C-CTTSSHHHHHHHHHHHHHHHS---------CCC--EEEEEEECTTEEEEEEE
T ss_pred HHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhee------cCccc--EEEEEEECCCceEEEEE
Confidence 6777888886 344 7888899999998888875 33333 45555555555555554
No 73
>PF05215 Spiralin: Spiralin; InterPro: IPR007880 This family consists of Spiralin proteins found in spiroplasma bacteria. Spiroplasmas are helically shaped pathogenic bacteria related to the mycoplasmas. The surface of spiroplasma bacteria is crowded with the membrane-anchored lipoprotein spiralin whose structure and function are unknown although its cellular function is thought to be a structural and mechanical one rather than catalytical [].; GO: 0016020 membrane
Probab=23.88 E-value=1.8e+02 Score=27.17 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhh---hcCCCCceEEEEecCCCcEEEEEecCCCC
Q 019606 215 KNDIKVLIQELFDSNVRQ---EFESENYTFDVYVTKDERVKILDFNPWGA 261 (338)
Q Consensus 215 ~~~i~~~I~~F~~~~i~~---~~~~~~yv~DVyi~~~~~v~LID~NPf~~ 261 (338)
+.+|+..+.--...-++. .-.-.+|+||||-+.+++ -|+++|-=++
T Consensus 53 k~EIk~~LdanvlKAVq~Vvk~At~tDf~y~vy~~nkgk-~l~~iNLE~~ 101 (239)
T PF05215_consen 53 KKEIKTALDANVLKAVQGVVKTATATDFQYDVYKDNKGK-ALITINLEAG 101 (239)
T ss_pred HHHHHHhhhHHHHHHHhhhcccccccceEEEEEEcCCCc-eEEEEecccC
Confidence 456666555444333333 333569999999998877 8889987654
No 74
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=22.52 E-value=75 Score=35.15 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=58.1
Q ss_pred EEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhcc-HHHHHHHHHHHHHH------------H-----hhh
Q 019606 171 FLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEK-KNDIKVLIQELFDS------------N-----VRQ 232 (338)
Q Consensus 171 ~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~~-~~~i~~~I~~F~~~------------~-----i~~ 232 (338)
.+++-++. +..||||+|-+++++|+.+|-. ++.... +..|++.|..=-.+ . ...
T Consensus 552 ~VLVEefI----~G~EyRv~VIg~kvvaa~~R~P----a~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~ 623 (737)
T TIGR01435 552 SVIIEEFL----PGTEYRFFVLNDKVEAVLLRVP----ANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETL 623 (737)
T ss_pred eEEEEecc----cCCEEEEEEECCeEEEEEEECC----CCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHH
Confidence 35666665 4899999999999999999987 333322 34454444431110 0 111
Q ss_pred hcCCCCceEEEEecCCCcEEEEEecCCC--C----CcCCCccchHHHhh
Q 019606 233 EFESENYTFDVYVTKDERVKILDFNPWG--A----FTLPLLFAWEELQQ 275 (338)
Q Consensus 233 ~~~~~~yv~DVyi~~~~~v~LID~NPf~--~----~Td~lLFsW~el~~ 275 (338)
.+...+|.+|=...++.+|+|=.-.-.+ + .||.+-=++.++..
T Consensus 624 ~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~ 672 (737)
T TIGR01435 624 MLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAI 672 (737)
T ss_pred HHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHH
Confidence 3445778888666666777775433222 1 46655556666654
No 75
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=20.89 E-value=88 Score=28.61 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=20.7
Q ss_pred CCCceEEEEecC-------------CCcEEEEEecCCCCC
Q 019606 236 SENYTFDVYVTK-------------DERVKILDFNPWGAF 262 (338)
Q Consensus 236 ~~~yv~DVyi~~-------------~~~v~LID~NPf~~~ 262 (338)
..=|.-||.+-+ +.+|.-||+||++.+
T Consensus 85 ~GIy~ADVVLVPLEDGDR~EAL~~mGK~VIaIDLNPLSRT 124 (178)
T PF02006_consen 85 EGIYSADVVLVPLEDGDRTEALVKMGKTVIAIDLNPLSRT 124 (178)
T ss_pred ccceeccEEEeccCCCcHHHHHHHcCCeEEEEeCCCcccc
Confidence 456888988752 268999999999963
No 76
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=20.87 E-value=85 Score=23.23 Aligned_cols=24 Identities=29% Similarity=0.769 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHhCCeeeeecccCCCCc
Q 019606 92 PELELKIKESIESLGGAVFPKLNWSAPKD 120 (338)
Q Consensus 92 pel~~~I~~aI~~lgG~vfpKLNwssPkD 120 (338)
+|+|...-+||+.||+ -||-.||.
T Consensus 8 ~eeh~~Fl~ai~~~G~-----g~~a~pk~ 31 (57)
T TIGR01557 8 EDLHDRFLQAVQKLGG-----PDWATPKR 31 (57)
T ss_pred HHHHHHHHHHHHHhCC-----CcccchHH
Confidence 7899999999999995 47888877
Done!