Query 019606
Match_columns 338
No_of_seqs 146 out of 260
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iow_A DD-ligase, DDLB, D-ALA\ 95.8 0.12 4.2E-06 46.9 13.0 133 101-265 133-280 (306)
2 4eg0_A D-alanine--D-alanine li 95.8 0.096 3.3E-06 48.7 12.3 136 100-268 140-292 (317)
3 1uc8_A LYSX, lysine biosynthes 95.4 0.046 1.6E-06 48.9 8.1 134 97-261 114-255 (280)
4 2q7d_A Inositol-tetrakisphosph 95.2 0.1 3.6E-06 50.1 10.5 92 171-265 195-316 (346)
5 3r5x_A D-alanine--D-alanine li 94.8 0.2 6.9E-06 45.8 10.9 135 101-268 128-276 (307)
6 3k3p_A D-alanine--D-alanine li 94.5 0.49 1.7E-05 45.8 13.5 141 96-268 191-349 (383)
7 3se7_A VANA; alpha-beta struct 94.4 0.25 8.6E-06 46.6 10.8 135 103-269 162-319 (346)
8 2i87_A D-alanine-D-alanine lig 94.2 0.8 2.7E-05 43.4 14.0 140 97-268 162-319 (364)
9 1z2n_X Inositol 1,3,4-trisphos 94.2 0.22 7.5E-06 45.9 9.8 88 171-265 169-304 (324)
10 4fu0_A D-alanine--D-alanine li 93.6 0.85 2.9E-05 43.2 12.9 140 95-267 166-324 (357)
11 3e5n_A D-alanine-D-alanine lig 93.5 0.98 3.4E-05 43.6 13.2 140 97-268 189-347 (386)
12 3i12_A D-alanine-D-alanine lig 93.2 1.7 5.7E-05 41.4 14.3 140 97-268 170-328 (364)
13 3tqt_A D-alanine--D-alanine li 93.1 1 3.6E-05 43.3 12.7 139 98-268 171-329 (372)
14 1ehi_A LMDDL2, D-alanine:D-lac 92.9 2.4 8.1E-05 40.5 14.9 137 98-265 166-326 (377)
15 1ulz_A Pyruvate carboxylase N- 92.6 1.7 5.9E-05 42.1 13.6 140 97-261 142-293 (451)
16 2vpq_A Acetyl-COA carboxylase; 91.3 2.2 7.6E-05 41.3 12.7 139 97-260 142-293 (451)
17 2dzd_A Pyruvate carboxylase; b 90.8 2.6 8.8E-05 41.0 12.7 138 97-260 148-297 (461)
18 2pvp_A D-alanine-D-alanine lig 90.6 1.8 6E-05 41.5 11.1 141 102-275 181-341 (367)
19 3ouz_A Biotin carboxylase; str 90.6 3.3 0.00011 40.1 13.2 140 97-261 147-298 (446)
20 4dim_A Phosphoribosylglycinami 90.4 1.6 5.5E-05 41.4 10.6 136 97-261 135-281 (403)
21 3vmm_A Alanine-anticapsin liga 90.3 2.3 7.9E-05 42.2 12.0 146 97-260 165-331 (474)
22 2w70_A Biotin carboxylase; lig 90.2 4.5 0.00016 39.0 13.8 136 99-260 146-293 (449)
23 3lwb_A D-alanine--D-alanine li 88.7 2.1 7.1E-05 41.0 10.0 134 102-268 184-343 (373)
24 3vot_A L-amino acid ligase, BL 87.1 5.3 0.00018 38.2 11.8 119 128-259 160-290 (425)
25 2fb9_A D-alanine:D-alanine lig 87.0 5.3 0.00018 37.0 11.4 93 171-268 188-298 (322)
26 1e4e_A Vancomycin/teicoplanin 85.3 1.9 6.4E-05 40.3 7.3 52 216-268 266-318 (343)
27 2ip4_A PURD, phosphoribosylami 84.6 7.1 0.00024 37.2 11.2 133 97-260 127-282 (417)
28 3jrx_A Acetyl-COA carboxylase 83.5 6.3 0.00021 40.5 10.8 137 97-262 235-383 (587)
29 1w96_A ACC, acetyl-coenzyme A 83.3 8.6 0.00029 38.6 11.7 134 97-259 225-371 (554)
30 3q2o_A Phosphoribosylaminoimid 82.6 16 0.00056 34.4 12.8 138 97-266 138-285 (389)
31 3glk_A Acetyl-COA carboxylase 81.5 6.2 0.00021 40.0 9.8 137 97-262 219-367 (540)
32 1gsa_A Glutathione synthetase; 80.3 15 0.00052 32.7 11.2 78 97-202 146-225 (316)
33 2dwc_A PH0318, 433AA long hypo 78.2 10 0.00034 36.4 9.7 137 97-261 147-297 (433)
34 3u9t_A MCC alpha, methylcroton 76.8 3.3 0.00011 43.2 6.2 141 98-261 170-320 (675)
35 2p0a_A Synapsin-3, synapsin II 74.9 9.1 0.00031 36.8 8.3 81 170-258 206-295 (344)
36 1kjq_A GART 2, phosphoribosylg 73.9 12 0.0004 35.1 8.7 136 97-260 139-283 (391)
37 3k5i_A Phosphoribosyl-aminoimi 73.0 15 0.00051 35.3 9.4 135 96-263 150-295 (403)
38 3mjf_A Phosphoribosylamine--gl 72.7 23 0.00078 34.3 10.8 138 97-260 133-294 (431)
39 3n6r_A Propionyl-COA carboxyla 72.3 4.7 0.00016 42.1 6.0 139 98-261 144-294 (681)
40 1i7n_A Synapsin II; synapse, p 71.3 13 0.00046 35.0 8.4 81 170-258 189-278 (309)
41 1pk8_A RAT synapsin I; ATP bin 69.5 13 0.00043 36.9 8.0 81 170-258 301-390 (422)
42 1vkz_A Phosphoribosylamine--gl 67.8 33 0.0011 32.7 10.5 136 97-260 132-290 (412)
43 3ax6_A Phosphoribosylaminoimid 67.2 15 0.00052 34.3 7.9 85 172-260 166-262 (380)
44 2qk4_A Trifunctional purine bi 64.3 24 0.00084 33.9 8.9 138 97-260 154-315 (452)
45 3aw8_A PURK, phosphoribosylami 64.1 48 0.0017 30.7 10.7 131 97-260 122-263 (369)
46 2yw2_A Phosphoribosylamine--gl 63.4 34 0.0012 32.4 9.7 138 97-260 128-288 (424)
47 2pn1_A Carbamoylphosphate synt 62.2 17 0.0006 33.0 7.1 126 95-261 136-274 (331)
48 3lp8_A Phosphoribosylamine-gly 61.5 48 0.0016 32.1 10.5 137 97-260 149-309 (442)
49 2yrx_A Phosphoribosylglycinami 60.5 31 0.0011 33.2 8.9 137 97-260 149-309 (451)
50 2xcl_A Phosphoribosylamine--gl 59.3 36 0.0012 32.2 9.0 137 97-260 128-288 (422)
51 1a9x_A Carbamoyl phosphate syn 57.1 62 0.0021 35.3 11.4 134 97-260 154-304 (1073)
52 2z04_A Phosphoribosylaminoimid 53.5 9.1 0.00031 35.6 3.6 129 96-260 116-255 (365)
53 1a9x_A Carbamoyl phosphate syn 52.5 1E+02 0.0035 33.6 12.2 136 98-263 701-849 (1073)
54 2qf7_A Pyruvate carboxylase pr 52.2 26 0.0009 38.8 7.5 139 98-261 163-314 (1165)
55 3df7_A Putative ATP-grAsp supe 51.1 37 0.0013 31.1 7.3 84 172-263 159-252 (305)
56 2r85_A PURP protein PF1517; AT 51.1 13 0.00044 33.7 4.2 25 236-260 264-288 (334)
57 3ln6_A Glutathione biosynthesi 42.5 59 0.002 34.3 8.1 76 98-204 511-590 (750)
58 3hbl_A Pyruvate carboxylase; T 40.6 64 0.0022 35.8 8.2 86 171-261 199-296 (1150)
59 3va7_A KLLA0E08119P; carboxyla 38.7 40 0.0014 37.7 6.2 138 98-260 172-322 (1236)
60 1z5s_D RAN-binding protein 2; 35.0 12 0.00042 28.7 1.0 14 98-111 49-62 (83)
61 4e4t_A Phosphoribosylaminoimid 32.0 54 0.0018 31.6 5.4 131 98-262 160-306 (419)
62 3tig_A TTL protein; ATP-grAsp, 30.6 30 0.001 33.7 3.2 25 237-261 316-340 (380)
63 3t7a_A Inositol pyrophosphate 27.4 1.4E+02 0.0047 28.7 7.1 94 172-277 198-306 (330)
64 3ln7_A Glutathione biosynthesi 24.2 1.1E+02 0.0036 32.4 6.3 80 98-204 516-596 (757)
65 3orq_A N5-carboxyaminoimidazol 23.9 92 0.0031 29.2 5.3 128 97-261 136-276 (377)
66 1tuw_A Tetracenomycin polyketi 23.4 10 0.00036 30.8 -1.3 30 87-122 68-97 (109)
67 3ku7_A MINE, cell division top 22.6 2.3E+02 0.0077 21.5 6.2 51 195-257 24-75 (80)
68 1k8r_B Protein kinase BYR2; si 22.3 29 0.001 27.7 1.2 31 172-204 27-58 (110)
69 3eth_A Phosphoribosylaminoimid 20.9 3.2E+02 0.011 25.6 8.4 125 98-262 106-245 (355)
No 1
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=95.84 E-value=0.12 Score=46.91 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=81.7
Q ss_pred HHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCC
Q 019606 101 SIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPS 180 (338)
Q Consensus 101 aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~ 180 (338)
+++++|..|+.|-...+-. .+..+|++.+|+...++. ++. ....+++-+|. +
T Consensus 133 ~~~~~~~p~vvKP~~g~~~-------~gv~~v~~~~el~~~~~~----------~~~----------~~~~~lvee~i-~ 184 (306)
T 1iow_A 133 EISALGLPVIVKPSREGSS-------VGMSKVVAENALQDALRL----------AFQ----------HDEEVLIEKWL-S 184 (306)
T ss_dssp HHHTTCSSEEEEETTCCTT-------TTCEEESSGGGHHHHHHH----------HTT----------TCSEEEEEECC-C
T ss_pred HHhccCCCEEEEeCCCCCC-------CCEEEeCCHHHHHHHHHH----------HHh----------hCCCEEEEeCc-C
Confidence 6778887899997665521 244678877776544321 110 11356778887 3
Q ss_pred CCCCceEEEEEeCCeEEEEeeCCc-cccchh-----------hh--ccHHHHHHHHHHHHHHHhhhhcCCC-CceEEEEe
Q 019606 181 LRPEMEFRCFVRGRCLVGISQREV-TMCYPA-----------LS--EKKNDIKVLIQELFDSNVRQEFESE-NYTFDVYV 245 (338)
Q Consensus 181 i~ps~EFRcFV~~~~LiaISQr~~-~~~y~~-----------L~--~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVyi 245 (338)
..||||.|-+++++++..+.. ..+|++ +. ...+.+...|.++.. .+...+... -+-+|+.+
T Consensus 185 ---g~e~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~-~~~~~lg~~G~~~vD~~~ 260 (306)
T 1iow_A 185 ---GPEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVL-KAWTTLGCKGWGRIDVML 260 (306)
T ss_dssp ---CCEEEEEEETTEECCCEEEECSSSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHH-HHHHHHTCCSEEEEEEEE
T ss_pred ---CEEEEEEEECCCccceEEEEeCCCeEchhheecCCCeeEEcCCCCCHHHHHHHHHHHH-HHHHHcCCceEEEEEEEE
Confidence 689999999998876554221 112322 10 122445555666554 333445554 45799999
Q ss_pred cCCCcEEEEEecCCCCCcCC
Q 019606 246 TKDERVKILDFNPWGAFTLP 265 (338)
Q Consensus 246 ~~~~~v~LID~NPf~~~Td~ 265 (338)
+.+++++++|+||..+.+..
T Consensus 261 ~~~g~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 261 DSDGQFYLLEANTSPGMTSH 280 (306)
T ss_dssp CTTSCEEEEEEESSCCCSTT
T ss_pred cCCCCEEEEEecCCCCCCCC
Confidence 98889999999998655543
No 2
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=95.79 E-value=0.096 Score=48.67 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=78.5
Q ss_pred HHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCC
Q 019606 100 ESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYP 179 (338)
Q Consensus 100 ~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~ 179 (338)
+..+++|..|+.|-...+-. .+..+|++.+|+...++. ++. ....+++-+|.
T Consensus 140 ~~~~~~g~PvvvKP~~~~~s-------~Gv~~v~~~~el~~a~~~----------~~~----------~~~~~lvEe~i- 191 (317)
T 4eg0_A 140 DIVAKLGLPLFVKPASEGSS-------VAVLKVKTADALPAALSE----------AAT----------HDKIVIVEKSI- 191 (317)
T ss_dssp HHHHHHCSCEEEEECC------------CCEEECSGGGHHHHHHH----------HTT----------TCSEEEEEECC-
T ss_pred HHHHhcCCCEEEEeCCCCCC-------CCEEEECCHHHHHHHHHH----------HHh----------CCCeEEEEcCC-
Confidence 33378888899997765421 234568887776554422 111 12356777786
Q ss_pred CCCCCceEEEEEeCCeEE---EEeeCCccccchhh-----------h--ccHHHHHHHHHHHHHHHhhhhcCCCCc-eEE
Q 019606 180 SLRPEMEFRCFVRGRCLV---GISQREVTMCYPAL-----------S--EKKNDIKVLIQELFDSNVRQEFESENY-TFD 242 (338)
Q Consensus 180 ~i~ps~EFRcFV~~~~Li---aISQr~~~~~y~~L-----------~--~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~D 242 (338)
. ...||+|.|-+++.. .|.... .+|++- . ...+++...|.+... .+...+....+ -+|
T Consensus 192 ~--~G~E~~v~vl~~~~~~~~~i~~~~--~~~~~~~k~~~g~~~~~~P~~l~~~~~~~l~~~a~-~~~~~lg~~G~~~vD 266 (317)
T 4eg0_A 192 E--GGGEYTACIAGDLDLPLIKIVPAG--EFYDYHAKYVANDTQYLIPCGLPAEQETELKRIAR-RAFDVLGCTDWGRAD 266 (317)
T ss_dssp C--SSEEEEEEEETTCCCCCEEEEC-----------------CEEESSCSSCHHHHHHHHHHHH-HHHHTTTCCSEEEEE
T ss_pred C--CCcEEEEEEECCcccceEEEeeCC--ceechhhcccCCCeeEEcCCCCCHHHHHHHHHHHH-HHHHHhCCCceEEEE
Confidence 2 279999999876433 333222 123221 1 123345555555554 33345666555 489
Q ss_pred EEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 243 VYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+.++++++++++|+||.-+.|..-+|
T Consensus 267 ~~~~~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 267 FMLDAAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp EEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred EEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 99998889999999998777766555
No 3
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=95.36 E-value=0.046 Score=48.88 Aligned_cols=134 Identities=10% Similarity=0.072 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...++.-. .+. ......+++-+
T Consensus 114 ~~~~~~~~~~~p~vvKp~~g~~~-------~gv~~v~~~~el~~~~~~~~--------~~~--------~~~~~~~lvqe 170 (280)
T 1uc8_A 114 EALRLMEAFGYPVVLKPVIGSWG-------RLLAXXXXXXXXXXXXXXKE--------VLG--------GFQHQLFYIQE 170 (280)
T ss_dssp HHHHHHHHHCSSEEEECSBCCBC-------SHHHHHHHHHC----------------------------CTTTTCEEEEE
T ss_pred HHHHHHHHhCCCEEEEECCCCCc-------ccceecccccccchhhhhHh--------hhc--------ccCCCcEEEEe
Confidence 46677788888899996665421 12234555444332221100 000 00123467788
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeCCccccchh------hh--ccHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCC
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPA------LS--EKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKD 248 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~------L~--~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~~~ 248 (338)
|. +- +..|+||+|.+++++++.+|....+... .. ...+++++.....+. .+...-+-+|+.++.+
T Consensus 171 ~i-~~-~~~e~~v~v~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~l~~~~~~~~~~~~~-----~lg~g~~~vD~~~~~~ 243 (280)
T 1uc8_A 171 YV-EK-PGRDIRVFVVGERAIAAIYRRSAHWITNTARGGQAENCPLTEEVARLSVKAAE-----AVGGGVVAVDLFESER 243 (280)
T ss_dssp CC-CC-SSCCEEEEEETTEEEEEEEC--------------CEECCCCHHHHHHHHHHHH-----HTTCSEEEEEEEEETT
T ss_pred cc-CC-CCceEEEEEECCEEEEEEEEecCCccccccCCccccCCCCCHHHHHHHHHHHH-----HhCCCeEEEEEEEeCC
Confidence 87 32 6899999999999998887731111110 00 112344444443333 4555556799999876
Q ss_pred CcEEEEEecCCCC
Q 019606 249 ERVKILDFNPWGA 261 (338)
Q Consensus 249 ~~v~LID~NPf~~ 261 (338)
.+++||+||-.+
T Consensus 244 -g~~~iEiN~r~g 255 (280)
T 1uc8_A 244 -GLLVNEVNHTME 255 (280)
T ss_dssp -EEEEEEEETTCC
T ss_pred -CeEEEEEeCCCC
Confidence 599999999754
No 4
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=95.19 E-value=0.1 Score=50.09 Aligned_cols=92 Identities=13% Similarity=0.224 Sum_probs=58.9
Q ss_pred EEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCcc----c-----cchhhh-c-------------------cHHHHHHH
Q 019606 171 FLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVT----M-----CYPALS-E-------------------KKNDIKVL 221 (338)
Q Consensus 171 ~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~----~-----~y~~L~-~-------------------~~~~i~~~ 221 (338)
.+++-+|. + ++..+|||||-++++++..-|... + +|+|-. + ..-.....
T Consensus 195 ~~lvQefI-~-~~G~dirv~VvG~~v~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~e 272 (346)
T 2q7d_A 195 PCVVQNFI-N-HNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEV 272 (346)
T ss_dssp CEEEEECC-C-CTTEEEEEEEETTEEEEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHH
T ss_pred CEEEEEee-C-CCCeEEEEEEECCEEEEEEEecCCCcCcCccccccccccceeeccCCccccccccccccccccCCChHH
Confidence 48899998 5 589999999999999886433211 1 111111 0 00000122
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEecC-CCcEEEEEecCCCCCcCC
Q 019606 222 IQELFDSNVRQEFESENYTFDVYVTK-DERVKILDFNPWGAFTLP 265 (338)
Q Consensus 222 I~~F~~~~i~~~~~~~~yv~DVyi~~-~~~v~LID~NPf~~~Td~ 265 (338)
+.+.-. .+...+....|-||+.++. +++.++||+|+|.+.++.
T Consensus 273 l~~lA~-~a~~alGl~~~gvDii~~~~~g~~~VlEVN~~PG~~g~ 316 (346)
T 2q7d_A 273 IRELSR-ALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGV 316 (346)
T ss_dssp HHHHHH-HHHHHHCCCEEEEEEEECTTTCCEEEEEEEESCCCTTC
T ss_pred HHHHHH-HHHHHhCCceEeeEEEeecCCCCEEEEEEeCCcccccc
Confidence 333332 4445688888999999985 578999999999875553
No 5
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=94.79 E-value=0.2 Score=45.80 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=81.3
Q ss_pred HHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCC
Q 019606 101 SIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPS 180 (338)
Q Consensus 101 aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~ 180 (338)
+++++|..|+.|-...+-. .+..+|++.+++...++.- +.. ...+++-+|. .
T Consensus 128 ~~~~~~~P~vvKP~~~~~s-------~Gv~~v~~~~el~~~~~~~----------~~~----------~~~~lvee~i-~ 179 (307)
T 3r5x_A 128 ELDKLGFPLVVKPNSGGSS-------VGVKIVYDKDELISMLETV----------FEW----------DSEVVIEKYI-K 179 (307)
T ss_dssp HHHHHCSSEEEEECC-----------CCCEEECSHHHHHHHHHHH----------HHH----------CSEEEEEECC-C
T ss_pred HHHhcCCCEEEEeCCCCCC-------CCEEEeCCHHHHHHHHHHH----------Hhc----------CCCEEEECCc-C
Confidence 5567888899996654422 2346788888877655421 111 1256777787 3
Q ss_pred CCCCceEEEEEeCCeEEEEeeCCc-cccchhh------------hccHHHHHHHHHHHHHHHhhhhcCCCCc-eEEEEec
Q 019606 181 LRPEMEFRCFVRGRCLVGISQREV-TMCYPAL------------SEKKNDIKVLIQELFDSNVRQEFESENY-TFDVYVT 246 (338)
Q Consensus 181 i~ps~EFRcFV~~~~LiaISQr~~-~~~y~~L------------~~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~DVyi~ 246 (338)
..||+|.|.+++.+++..+.. ..+|++- ....+++...|.+... .+...+....+ -+|+.++
T Consensus 180 ---G~e~~v~v~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~l~~~~~~~i~~~a~-~~~~~lg~~G~~~vD~~~~ 255 (307)
T 3r5x_A 180 ---GEEITCSIFDGKQLPIISIRHAAEFFDYNAKYDDASTIEEVIELPAELKERVNKASL-ACYKALKCSVYARVDMMVK 255 (307)
T ss_dssp ---SEEEEEEEETTEECCCEEEEEEEEEETTEEEEEEEEEEEEECCCCHHHHHHHHHHHH-HHHHHTTCCSEEEEEEEEE
T ss_pred ---CEEEEEEEECCEEeeEEEEEcCCcccChhhcCCCCCCeEecCCCCHHHHHHHHHHHH-HHHHHhCCCceEEEEEEEE
Confidence 689999999998744421110 0122210 1233455555655554 34445665544 5899998
Q ss_pred CCCcEEEEEecCCCCCcCCCcc
Q 019606 247 KDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 247 ~~~~v~LID~NPf~~~Td~lLF 268 (338)
+++++++|+||--+.|...+|
T Consensus 256 -~g~~~vlEiN~rpg~~~~s~~ 276 (307)
T 3r5x_A 256 -DGIPYVMEVNTLPGMTQASLL 276 (307)
T ss_dssp -TTEEEEEEEESSCCCSTTSHH
T ss_pred -CCeEEEEEEcCCCCCCccCHH
Confidence 589999999997666665555
No 6
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=94.55 E-value=0.49 Score=45.85 Aligned_cols=141 Identities=15% Similarity=0.102 Sum_probs=80.1
Q ss_pred HHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 96 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
+.+.++.+++|..||.|-....-. -+..+|++.+|+...++. ++.. .-.+++-
T Consensus 191 ~~~~~~~~~lg~PvvVKP~~ggss-------~GV~~v~~~~el~~al~~----------a~~~----------~~~vlVE 243 (383)
T 3k3p_A 191 SKLAEVEEKLIYPVFVKPANMGSS-------VGISKAENRTDLKQAIAL----------ALKY----------DSRVLIE 243 (383)
T ss_dssp HHHHHHHHHCCSSEEEEECC-------------CEEESSHHHHHHHHHH----------HHHH----------CSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCC-------CCEEEECCHHHHHHHHHH----------HHhC----------CCeEEEE
Confidence 567777889998899997654421 234678888887655432 1111 1246677
Q ss_pred ccCCCCCCCceEEEEEeC-CeEEE--EeeCCc-cccchhhh-------------ccHHHHHHHHHHHHHHHhhhhcCCCC
Q 019606 176 KWYPSLRPEMEFRCFVRG-RCLVG--ISQREV-TMCYPALS-------------EKKNDIKVLIQELFDSNVRQEFESEN 238 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~~-~~Lia--ISQr~~-~~~y~~L~-------------~~~~~i~~~I~~F~~~~i~~~~~~~~ 238 (338)
+|. . ..||+|.|-. +.+.+ +..+-. ..+|+|-. ...+++...|.+... .+...+....
T Consensus 244 e~I-~---G~E~~v~vl~d~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~-~~~~aLg~~G 318 (383)
T 3k3p_A 244 QGV-D---AREIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAA-TAFRTLGCCG 318 (383)
T ss_dssp ECC-C---SEEEEEEEEESSSCEECCCEEEC-----------------CEESSCCCCHHHHHHHHHHHH-HHHHHTTCCE
T ss_pred cCC-C---CeEEEEEEEeCCCeeEEeeEEEecCCCccchhhcccCCCeeEEecCCCCHHHHHHHHHHHH-HHHHHcCCce
Confidence 787 3 7999999864 33322 222211 12343311 123445556666555 3334565555
Q ss_pred ce-EEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 239 YT-FDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 239 yv-~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+. +|+.++.+++++++|+||--+.|..-+|
T Consensus 319 ~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~ 349 (383)
T 3k3p_A 319 LSRCDFFLTEDGKVYLNELNTMPGFTQWSMY 349 (383)
T ss_dssp EEEEEEEECTTCCEEEEEEESSCCCC--CHH
T ss_pred EEEEEEEEECCCCEEEEEeeCCCCCCcccHH
Confidence 54 9999998889999999998766654444
No 7
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=94.41 E-value=0.25 Score=46.62 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=75.1
Q ss_pred HHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCCC
Q 019606 103 ESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLR 182 (338)
Q Consensus 103 ~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i~ 182 (338)
+++|..|+.|-...+- .-+..+|++.+|+...++. ++. ....+++-+|. .
T Consensus 162 ~~lg~PvvvKP~~~~~-------s~Gv~~v~~~~el~~a~~~----------~~~----------~~~~vlvEe~I-~-- 211 (346)
T 3se7_A 162 DQLTYPVFVKPARSGS-------SFGVSKVAREEDLQGAVEA----------ARE----------YDSKVLIEEAV-I-- 211 (346)
T ss_dssp TTCCSSEEEEESSCCT-------TTTCEEECSHHHHHHHHHH----------HTT----------TCSEEEEEECC-C--
T ss_pred HhcCCCEEEEeCCCCC-------CcCEEEECCHHHHHHHHHH----------HHh----------CCCcEEEEeCc-C--
Confidence 3455566666444331 1234568887776544321 111 12356778887 3
Q ss_pred CCceEEEEEeCC----eEEEEeeCCc-cccchhh-----------------hccHHHHHHHHHHHHHHHhhhhcCCCCc-
Q 019606 183 PEMEFRCFVRGR----CLVGISQREV-TMCYPAL-----------------SEKKNDIKVLIQELFDSNVRQEFESENY- 239 (338)
Q Consensus 183 ps~EFRcFV~~~----~LiaISQr~~-~~~y~~L-----------------~~~~~~i~~~I~~F~~~~i~~~~~~~~y- 239 (338)
..||+|.|-.+ ...++..+.. ..+|++. ....+++...|.+.... +...+....+
T Consensus 212 -G~E~~v~vl~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~~~~i~~~a~~-~~~~lg~~G~~ 289 (346)
T 3se7_A 212 -GTEIGCAVMGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPADISTTSRSLVQDTAKA-VYRALGCRGLS 289 (346)
T ss_dssp -SEEEEEEEEEETTEEEECCCEEECCC--------------CGGGSCEESSCCCCHHHHHHHHHHHHH-HHHHHTCCEEE
T ss_pred -CEEEEEEEEecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCCCCHHHHHHHHHHHHH-HHHHhCCceEE
Confidence 78999998643 4444544332 1244440 01234455556655552 3334555444
Q ss_pred eEEEEecCCCcEEEEEecCCCCCcCCCccc
Q 019606 240 TFDVYVTKDERVKILDFNPWGAFTLPLLFA 269 (338)
Q Consensus 240 v~DVyi~~~~~v~LID~NPf~~~Td~lLFs 269 (338)
-+|+.++.+++++++|+||.-+.|..-+|.
T Consensus 290 ~vD~~~~~~g~~~vlEiN~rPG~t~~s~~p 319 (346)
T 3se7_A 290 RVDLFLTEDGKVVLNEVNTFPGMTSYSRYP 319 (346)
T ss_dssp EEEEEECTTSCEEEEEEESSCCCSTTCHHH
T ss_pred EEEEEEeCCCCEEEEEEeCCCCCCcccHHH
Confidence 599999988899999999876666665554
No 8
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=94.24 E-value=0.8 Score=43.35 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=81.5
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. -+..+|++.+|+...+.. ++. ....+++-+
T Consensus 162 ~~~~~~~~~g~PvvvKP~~g~~s-------~Gv~~v~~~~el~~a~~~----------~~~----------~~~~~lvEe 214 (364)
T 2i87_A 162 ILKLVNDKLNYPVFVKPANLGSS-------VGISKCNNEAELKEGIKE----------AFQ----------FDRKLVIEQ 214 (364)
T ss_dssp HHHHHHHHCCSSEEEEESSCSSC-------TTCEEESSHHHHHHHHHH----------HHT----------TCSEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCCC-------CCEEEECCHHHHHHHHHH----------HHh----------cCCeEEEEe
Confidence 46666788888899996654421 245678888876544431 121 113567788
Q ss_pred cCCCCCCCceEEEEEeCC---eEEEEeeCCc-cccchhhh-------------ccHHHHHHHHHHHHHHHhhhhcCCCC-
Q 019606 177 WYPSLRPEMEFRCFVRGR---CLVGISQREV-TMCYPALS-------------EKKNDIKVLIQELFDSNVRQEFESEN- 238 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~---~LiaISQr~~-~~~y~~L~-------------~~~~~i~~~I~~F~~~~i~~~~~~~~- 238 (338)
|. . ..|++|.|-.+ .++++...-. ..+|++-. ...+++...|.+... .+...+....
T Consensus 215 ~I-~---G~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~l~~~~~~~i~~~a~-~~~~alg~~G~ 289 (364)
T 2i87_A 215 GV-N---AREIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMAL-EAFKATDCSGL 289 (364)
T ss_dssp CC-C---CEEEEEEEEESSSCEECCCEEECCSCCC-----------CCEESSCSSCHHHHHHHHHHHH-HHHHHTTCCEE
T ss_pred Cc-c---CeEEEEEEEcCCCcEEeeeEEEecCCCcCCHHHcccCCCeeEEeCCCCCHHHHHHHHHHHH-HHHHHcCCCcE
Confidence 87 3 68999998643 2333332221 12333221 112445556666554 3334555543
Q ss_pred ceEEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 239 YTFDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 239 yv~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+-+|+.++.+++++|+|+||--+.|..-+|
T Consensus 290 ~~vD~~~~~~g~~~viEiN~rpg~t~~s~~ 319 (364)
T 2i87_A 290 VRADFFVTEDNQIYINETNAMPGFTAFSMY 319 (364)
T ss_dssp EEEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred EEEEEEEecCCCEEEEEEeCCCCCCchhHH
Confidence 368999988889999999997555544443
No 9
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=94.22 E-value=0.22 Score=45.94 Aligned_cols=88 Identities=8% Similarity=0.053 Sum_probs=55.7
Q ss_pred EEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCccc----------cchhh-----------------------------
Q 019606 171 FLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTM----------CYPAL----------------------------- 211 (338)
Q Consensus 171 ~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~----------~y~~L----------------------------- 211 (338)
.+++-+|. +- +..|+||+|-+++++++..+...+ +|++.
T Consensus 169 ~~lvqe~i-~~-~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~ 246 (324)
T 1z2n_X 169 PCLCQHYI-NH-NNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKI 246 (324)
T ss_dssp SEEEEECC-CC-TTCEEEEEEETTEEEEEEECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCB
T ss_pred CEEEEEcc-CC-CCcEEEEEEECCEEEEEEecCcccccCCCccceeeccccchhhhccccccccccccccccccchhhcc
Confidence 36778888 33 579999999999998875544321 22211
Q ss_pred -------hccH-HHHHHHHHHHHHHHhhhhcCCCCceEEEEec-CCCcEEEEEecCCCCCcCC
Q 019606 212 -------SEKK-NDIKVLIQELFDSNVRQEFESENYTFDVYVT-KDERVKILDFNPWGAFTLP 265 (338)
Q Consensus 212 -------~~~~-~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi~-~~~~v~LID~NPf~~~Td~ 265 (338)
.... +++++.....+. .+...-+-+|+.++ .++++++||+||..+.+.-
T Consensus 247 ~~~~~~~~~~~~~~i~~~a~~~~~-----~lg~~~~~vD~~~~~~~g~~~vlEvN~~Pg~~~~ 304 (324)
T 1z2n_X 247 LEDPILLNLTSEAEMRDLAYKVRC-----ALGVQLCGIDFIKENEQGNPLVVDVNVFPSYGGK 304 (324)
T ss_dssp CSCTTTTTSCCHHHHHHHHHHHHH-----HHTCSEEEEEEECGGGCSSCEEEEEEESCCTTSC
T ss_pred ccCCccccCCCHHHHHHHHHHHHH-----HhCCcEEeeEEEEEcCCCCEEEEEEcCCCCcCCC
Confidence 0111 344443333333 44555567999887 4578999999998665543
No 10
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=93.64 E-value=0.85 Score=43.24 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEE
Q 019606 95 ELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLAL 174 (338)
Q Consensus 95 ~~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvL 174 (338)
...+.++.+++|..||.|=.. +.. .-+.-+|++.+|+-..++ .++. ....+++
T Consensus 166 ~~~~~~~~~~lg~PvvVKP~~-----gg~--s~Gv~~v~~~~el~~~~~----------~a~~----------~~~~vlv 218 (357)
T 4fu0_A 166 EAAMKEIEANLTYPLFIKPVR-----AGS--SFGITKVIEKQELDAAIE----------LAFE----------HDTEVIV 218 (357)
T ss_dssp HHHHHHHHHHCCSSEEEEETT-----CSS--STTCEEESSHHHHHHHHH----------HHTT----------TCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECC-----CCC--CCceEEeccHHhHHHHHH----------HHhc----------cCCeEEE
Confidence 445677778999999999443 221 124467888888654332 1221 1124555
Q ss_pred eccCCCCCCCceEEEEEeCC-eEEE--Ee--eCCccccchhhh-------------ccHHHHHHHHHHHHHHHhhhhcCC
Q 019606 175 RKWYPSLRPEMEFRCFVRGR-CLVG--IS--QREVTMCYPALS-------------EKKNDIKVLIQELFDSNVRQEFES 236 (338)
Q Consensus 175 rkW~~~i~ps~EFRcFV~~~-~Lia--IS--Qr~~~~~y~~L~-------------~~~~~i~~~I~~F~~~~i~~~~~~ 236 (338)
.+|. +.+|+.|-|-.. ..+. +. .+.. .+|++-. ...+++.++|.+... ++...+..
T Consensus 219 E~~i----~G~e~~v~vl~~~~~~~~~v~~~~~~~-~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~-~~~~aLg~ 292 (357)
T 4fu0_A 219 EETI----NGFEVGCAVLGIDELIVGRVDEIELSS-GFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAV-TIYKALGC 292 (357)
T ss_dssp EECC----CSEEEEEEEEESSSEEECCCEEEEECH-HHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHH-HHHHHTTC
T ss_pred EEec----CCEEEEEEEEecCCceEEEEEEEEccc-ccccccccccCCCceEecCCCCCHHHHHHHHHHHH-HHHHHhCC
Confidence 5554 478999988643 2221 11 1111 2333211 123566777777665 34445665
Q ss_pred CCc-eEEEEecCCCcEEEEEecCCCCCcCCCc
Q 019606 237 ENY-TFDVYVTKDERVKILDFNPWGAFTLPLL 267 (338)
Q Consensus 237 ~~y-v~DVyi~~~~~v~LID~NPf~~~Td~lL 267 (338)
.++ -+|+.++++++++++|+||--+.|..-|
T Consensus 293 ~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~ 324 (357)
T 4fu0_A 293 SGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSR 324 (357)
T ss_dssp CEEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred cceEEEEEEEeCCCCEEEEEEeCCCCCCcccH
Confidence 555 4999999889999999999766554434
No 11
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=93.46 E-value=0.98 Score=43.62 Aligned_cols=140 Identities=18% Similarity=0.194 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..||.|-...+-. -+..+|++.+|+...++. ++. ....+++-+
T Consensus 189 ~~~~~~~~lg~PvvVKP~~ggss-------~Gv~~v~~~~el~~a~~~----------a~~----------~~~~vlVEe 241 (386)
T 3e5n_A 189 DVDTLIAQLGLPLFVKPANQGSS-------VGVSQVRTADAFAAALAL----------ALA----------YDHKVLVEA 241 (386)
T ss_dssp CHHHHHHHHCSSEEEEESBSCSS-------TTCEEECSGGGHHHHHHH----------HTT----------TCSEEEEEE
T ss_pred hHHHHHHhcCCCEEEEECCCCcC-------CCEEEECCHHHHHHHHHH----------HHh----------CCCcEEEEc
Confidence 35667788998899997665422 234568877766544321 111 113467787
Q ss_pred cCCCCCCCceEEEEEeCC-e--EEEEeeCCcc-ccchhhh--------------ccHHHHHHHHHHHHHHHhhhhcCCCC
Q 019606 177 WYPSLRPEMEFRCFVRGR-C--LVGISQREVT-MCYPALS--------------EKKNDIKVLIQELFDSNVRQEFESEN 238 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~-~--LiaISQr~~~-~~y~~L~--------------~~~~~i~~~I~~F~~~~i~~~~~~~~ 238 (338)
|. . ..||+|.|-.+ . .+.+...... .+|++-. ...+++...|.+.... +...+....
T Consensus 242 ~I-~---G~E~~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~-~~~aLg~~G 316 (386)
T 3e5n_A 242 AV-A---GREIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQ-AYQALGCAG 316 (386)
T ss_dssp CC-C---SEEEEEEEECSSSCEEEEEEEECC-----------------CEESSCSSCHHHHHHHHHHHHH-HHHHHTCCS
T ss_pred CC-C---CeEEEEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHH-HHHHhCCcc
Confidence 87 3 59999998743 2 2322333221 1333211 1224455566665553 333455555
Q ss_pred ce-EEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 239 YT-FDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 239 yv-~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+. +|+.++.+++++++|+||.-+.|..-+|
T Consensus 317 ~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~ 347 (386)
T 3e5n_A 317 MARVDVFLCADGRIVINEVNTLPGFTRISVY 347 (386)
T ss_dssp EEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred EEEEEEEEECCCcEEEEEeECCCCCCccCHH
Confidence 54 8999998889999999998766654443
No 12
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=93.24 E-value=1.7 Score=41.35 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++.+++|..||.|-....- .-+..+|++.+|+...++. ++.. .-.+++-+
T Consensus 170 ~~~~~~~~lg~PvvVKP~~ggs-------s~Gv~~v~~~~el~~a~~~----------a~~~----------~~~vlVEe 222 (364)
T 3i12_A 170 SFAEVESRLGLPLFVKPANQGS-------SVGVSKVANEAQYQQAVAL----------AFEF----------DHKVVVEQ 222 (364)
T ss_dssp CHHHHHHHHCSSEEEEETTCCT-------TTTCEEESSHHHHHHHHHH----------HHHH----------CSEEEEEE
T ss_pred hHHHHHHhcCCCEEEEECCCCC-------CcCeEEeCCHHHHHHHHHH----------HHhc----------CCcEEEEc
Confidence 3556677889889999765431 1244678888887655432 1111 12466777
Q ss_pred cCCCCCCCceEEEEEeCCe---EEEEeeC-Cccccchhh----h----------ccHHHHHHHHHHHHHHHhhhhcCCCC
Q 019606 177 WYPSLRPEMEFRCFVRGRC---LVGISQR-EVTMCYPAL----S----------EKKNDIKVLIQELFDSNVRQEFESEN 238 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~---LiaISQr-~~~~~y~~L----~----------~~~~~i~~~I~~F~~~~i~~~~~~~~ 238 (338)
|. . ..||+|.|-.++ ...+... -...+|++- . ...+++...|.+... .+...+....
T Consensus 223 ~I-~---G~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~-~~~~alg~~G 297 (364)
T 3i12_A 223 GI-K---GREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAI-QAYQTLGCAG 297 (364)
T ss_dssp CC-C---SEEEEEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHH-HHHHHTTCCE
T ss_pred Cc-C---CeEEEEEEEeCCCceEeeeEEEecCCCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHH-HHHHHhCCce
Confidence 76 2 489999996432 2222221 001133221 1 123445556666555 3334455555
Q ss_pred c-eEEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 239 Y-TFDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 239 y-v~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+ -+|+.++.+++++++|+||.-+.|..-+|
T Consensus 298 ~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~ 328 (364)
T 3i12_A 298 MARVDVFLTADNEVVINEINTLPGFTNISMY 328 (364)
T ss_dssp EEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred EEEEEEEEecCCCEEEEEeeCCCCCCCCCHH
Confidence 5 48999998889999999987666655444
No 13
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=93.08 E-value=1 Score=43.29 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHHHhCCe-eeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 98 IKESIESLGGA-VFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 98 I~~aI~~lgG~-vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
+.++++++|.. ||.|=....-. -+..+|++.+|+...++. ++. ....+++-+
T Consensus 171 ~~~~~~~lg~P~vvVKP~~ggss-------~Gv~~v~~~~eL~~a~~~----------a~~----------~~~~vlVEe 223 (372)
T 3tqt_A 171 YQRLLDRWGTSELFVKAVSLGSS-------VATLPVKTETEFTKAVKE----------VFR----------YDDRLMVEP 223 (372)
T ss_dssp HHHHHHHC---CEEEEESSCCSG-------GGEEEECSHHHHHHHHHH----------HTT----------TCSCEEEEE
T ss_pred HHHHHHhcCCCeEEEEECCCCCC-------CCEEEECCHHHHHHHHHH----------HHh----------cCCCEEEEC
Confidence 55667788887 99997654322 133578888876654431 111 112356777
Q ss_pred cCCCCCCCceEEEEEeCCe-EE--EEeeCC-ccccchhhh--------------ccHHHHHHHHHHHHHHHhhhhcCCCC
Q 019606 177 WYPSLRPEMEFRCFVRGRC-LV--GISQRE-VTMCYPALS--------------EKKNDIKVLIQELFDSNVRQEFESEN 238 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~-Li--aISQr~-~~~~y~~L~--------------~~~~~i~~~I~~F~~~~i~~~~~~~~ 238 (338)
|. . ..||+|.|-.++ +. ++.... ...+|+|-. ...+++.+.|.+... .+...+....
T Consensus 224 ~I-~---G~E~~v~vl~~~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~-~~~~aLg~~G 298 (372)
T 3tqt_A 224 RI-R---GREIECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAI-DAFKMVHCSG 298 (372)
T ss_dssp CC-C---SEEEEEEEEESSSCEECCCEEEECC---------------CEEESCCCCCHHHHHHHHHHHH-HHHHHTTCCE
T ss_pred CC-C---CEEEEEEEEeCCCceEeeeEEEecCCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHH-HHHHHhCCcc
Confidence 76 3 799999986433 21 111110 012333211 123445566666655 3334555555
Q ss_pred c-eEEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 239 Y-TFDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 239 y-v~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+ -+|+.++.+++++++|+||.-+.|..-+|
T Consensus 299 ~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 299 MARVDFFVTPNNKVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp EEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred EEEEEEEEeCCCcEEEEEEECCCCcCccCHH
Confidence 5 48999998889999999998777766555
No 14
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=92.92 E-value=2.4 Score=40.50 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=83.2
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|..|+.|-...+-. -+..+|++.+|+...++. ++. ....+++-+|
T Consensus 166 ~~~~~~~~g~PvvVKP~~~~~s-------~Gv~~v~~~~el~~a~~~----------~~~----------~~~~vlvEe~ 218 (377)
T 1ehi_A 166 WDKIVAELGNIVFVKAANQGSS-------VGISRVTNAEEYTEALSD----------SFQ----------YDYKVLIEEA 218 (377)
T ss_dssp HHHHHHHHCSCEEEEESSCCTT-------TTEEEECSHHHHHHHHHH----------HTT----------TCSCEEEEEC
T ss_pred HHHHHHhcCCCEEEEeCCCCCC-------cCEEEeCCHHHHHHHHHH----------HHh----------cCCcEEEEcC
Confidence 4556677888899997765422 234678888887654432 111 0124667777
Q ss_pred CCCCCCCceEEEEEeCC---eEEEEeeCCc------cccchhhh----c----------cHHHHHHHHHHHHHHHhhhhc
Q 019606 178 YPSLRPEMEFRCFVRGR---CLVGISQREV------TMCYPALS----E----------KKNDIKVLIQELFDSNVRQEF 234 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~~~---~LiaISQr~~------~~~y~~L~----~----------~~~~i~~~I~~F~~~~i~~~~ 234 (338)
. . -..||+|.|-.+ +++++..+.. ..+|++-. . ..+++...|.+... .+...+
T Consensus 219 I-~--G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~-~~~~al 294 (377)
T 1ehi_A 219 V-N--GARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMAL-DAYKVL 294 (377)
T ss_dssp C-C--CSCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHH-HHHHHT
T ss_pred C-C--CCceEEEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHH-HHHHHc
Confidence 6 2 238999998644 4666544322 12444311 1 22455566666554 333456
Q ss_pred CCCCc-eEEEEecCCCcEEEEEecCCCCCcCC
Q 019606 235 ESENY-TFDVYVTKDERVKILDFNPWGAFTLP 265 (338)
Q Consensus 235 ~~~~y-v~DVyi~~~~~v~LID~NPf~~~Td~ 265 (338)
....+ -+|+.++.+++++|+|+||-.+.|..
T Consensus 295 g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~ 326 (377)
T 1ehi_A 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNM 326 (377)
T ss_dssp TCCEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCcc
Confidence 55544 68999987789999999997655543
No 15
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=92.60 E-value=1.7 Score=42.09 Aligned_cols=140 Identities=13% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...++...... ...|. ...+++-+
T Consensus 142 ~~~~~~~~~g~PvvvKp~~g~gg-------~Gv~~v~~~~el~~~~~~~~~~~---~~~~~-----------~~~~lvEe 200 (451)
T 1ulz_A 142 EAKALAREIGYPVLLKATAGGGG-------RGIRICRNEEELVKNYEQASREA---EKAFG-----------RGDLLLEK 200 (451)
T ss_dssp HHHHHHHHHCSSEEEEECSSSSC-------CSCEEESSHHHHHHHHHHHHHHH---HHTTS-----------CCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEECCCCCC-------ccEEEeCCHHHHHHHHHHHHHHH---HHhcC-----------CCeEEEEE
Confidence 46667788998899997776521 24467899888766554321110 11111 12467777
Q ss_pred cCCCCCCCceEEEEEe---CCeEEEEeeC------Cccccchhhh--ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEE
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVGISQR------EVTMCYPALS--EKKNDIKVLIQELFDSNVRQEFESEN-YTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~LiaISQr------~~~~~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVy 244 (338)
|. . ...|+++-|- +|+++++..| +....+.... ...+++...|.+.... +...+.... +.+|+.
T Consensus 201 ~i-~--g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~-~~~~lg~~G~~~ve~~ 276 (451)
T 1ulz_A 201 FI-E--NPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTK-AAKEIGYYNAGTMEFI 276 (451)
T ss_dssp CC-C--SCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHH-HHHHTTCCEEEEEEEE
T ss_pred cc-c--CCeEEEEEEEEcCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHH-HHHHcCCCcceEEEEE
Confidence 86 2 2368888764 3677776533 2211111100 1224455555555543 333465554 358999
Q ss_pred ecCCCcEEEEEecCCCC
Q 019606 245 VTKDERVKILDFNPWGA 261 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~ 261 (338)
++.++++++||+||=..
T Consensus 277 ~~~~g~~~viEiN~R~~ 293 (451)
T 1ulz_A 277 ADQEGNLYFIEMNTRIQ 293 (451)
T ss_dssp ECTTCCEEEEEEECSCC
T ss_pred EeCCCCEEEEEeeCCCC
Confidence 98888899999999543
No 16
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=91.32 E-value=2.2 Score=41.27 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=79.5
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...++.-.. .....|. ...+++-+
T Consensus 142 ~~~~~~~~~g~PvvvKp~~g~gg-------~Gv~~v~~~~el~~~~~~~~~---~~~~~~~-----------~~~~lvEe 200 (451)
T 2vpq_A 142 EAKKIAKKIGYPVIIKATAGGGG-------KGIRVARDEKELETGFRMTEQ---EAQTAFG-----------NGGLYMEK 200 (451)
T ss_dssp HHHHHHHHHCSSEEEEETTCCTT-------CSEEEESSHHHHHHHHHHHHH---HHHHHHS-----------CCCEEEEE
T ss_pred HHHHHHHhcCCcEEEEECCCCCC-------CCEEEeCCHHHHHHHHHHHHH---HHHhhcC-----------CCcEEEEE
Confidence 46667788998899997776521 244678998887665542111 1111121 12367777
Q ss_pred cCCCCCCCceEEEEEe---CCeEEEEe------eCCccccchhhhc--cHHHHHHHHHHHHHHHhhhhcCCCCc-eEEEE
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVGIS------QREVTMCYPALSE--KKNDIKVLIQELFDSNVRQEFESENY-TFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~LiaIS------Qr~~~~~y~~L~~--~~~~i~~~I~~F~~~~i~~~~~~~~y-v~DVy 244 (338)
|. . -..|+++.|- +|+++.+. |++....+..... ..+++...|.+.... +...+....+ .+|+.
T Consensus 201 ~i-~--g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~-~~~~lg~~G~~~ve~~ 276 (451)
T 2vpq_A 201 FI-E--NFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVR-AAKAVNYENAGTIEFI 276 (451)
T ss_dssp CC-C--SEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHH-HHHHTTCCEEEEEEEE
T ss_pred ec-C--CCeEEEEEEEEcCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHH-HHHHcCCcceEEEEEE
Confidence 76 2 2368888653 36777654 3322111111010 223445555555542 3334655543 48999
Q ss_pred ec-CCCcEEEEEecCCC
Q 019606 245 VT-KDERVKILDFNPWG 260 (338)
Q Consensus 245 i~-~~~~v~LID~NPf~ 260 (338)
++ +++++++||+||=-
T Consensus 277 ~~~~~g~~~viEiN~R~ 293 (451)
T 2vpq_A 277 YDLNDNKFYFMEMNTRI 293 (451)
T ss_dssp EETTTTEEEEEEEECSC
T ss_pred EECCCCCEEEEEeeCCC
Confidence 98 77889999999954
No 17
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=90.82 E-value=2.6 Score=41.02 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-.- +...|++.+|+...++.-.. .....|. ...+++-+
T Consensus 148 ~~~~~~~~~g~PvvvKp~~g~gg~-------Gv~~v~~~~el~~~~~~~~~---~~~~~~~-----------~~~~lvEe 206 (461)
T 2dzd_A 148 DVVAFAEAHGYPIIIKAALGGGGR-------GMRIVRSKSEVKEAFERAKS---EAKAAFG-----------SDEVYVEK 206 (461)
T ss_dssp HHHHHHHHHCSCEEEEESTTCSSS-------SEEEECCGGGHHHHHHHHHH---HHHHHTS-----------CCCEEEEE
T ss_pred HHHHHHHhcCCcEEEEeCCCCCCC-------CEEEeCCHHHHHHHHHHHHH---HHHhhcC-----------CCcEEEEE
Confidence 466777889988999988876322 34568888876655432111 0001121 12356777
Q ss_pred cCCCCCCCceEEEEEe---CCeEEEEe------eCCccccchhhh--ccHHHHHHHHHHHHHHHhhhhcCCCCc-eEEEE
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVGIS------QREVTMCYPALS--EKKNDIKVLIQELFDSNVRQEFESENY-TFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~LiaIS------Qr~~~~~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~~~y-v~DVy 244 (338)
|. ....|+++.|- +|+++++. ||+....+++.. ...+++...|.+... .+...+....+ .+|+.
T Consensus 207 ~i---~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~-~~~~~lg~~g~~~ve~~ 282 (461)
T 2dzd_A 207 LI---ENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAV-QLMRSVGYVNAGTVEFL 282 (461)
T ss_dssp CC---CSCEEEEEEEEECTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHH-HHHHHTTCCEEEEEEEE
T ss_pred CC---CCCeEEEEEEEEcCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHH-HHHHHcCCCcceEEEEE
Confidence 86 23468888763 46777543 333212211111 122345555555544 33334555443 48999
Q ss_pred ecCCCcEEEEEecCCC
Q 019606 245 VTKDERVKILDFNPWG 260 (338)
Q Consensus 245 i~~~~~v~LID~NPf~ 260 (338)
++. +++++||+||=-
T Consensus 283 ~~~-~~~~viEiN~R~ 297 (461)
T 2dzd_A 283 VSG-DEFYFIEVNPRI 297 (461)
T ss_dssp EET-TEEEEEEEESSC
T ss_pred EeC-CCEEEEEEECCC
Confidence 987 799999999954
No 18
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=90.65 E-value=1.8 Score=41.51 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=82.9
Q ss_pred HHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCC
Q 019606 102 IESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSL 181 (338)
Q Consensus 102 I~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i 181 (338)
++++|..||.|-...+-. -+..+|++.+|+...+. .++. ....+++-+|. .
T Consensus 181 ~~~lg~PvvVKP~~g~ss-------~Gv~~v~~~~el~~a~~----------~~~~----------~~~~vlVEe~I-~- 231 (367)
T 2pvp_A 181 LMNFNFPFIVKPSNAGSS-------LGVNVVKEEKELIYALD----------SAFE----------YSKEVLIEPFI-Q- 231 (367)
T ss_dssp HCCSCSCEEEEESSCCTT-------TTCEEESSTTSHHHHHH----------HHTT----------TCSCEEEEECC-T-
T ss_pred HhccCCCEEEEECCCCCC-------CCEEEECCHHHHHHHHH----------HHHh----------cCCcEEEEeCC-C-
Confidence 567887899997665422 23456777776543332 1111 01245667776 2
Q ss_pred CCCce---EEEEEeCCeEEEEe-eCC-ccccchh-----------hh--ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEE
Q 019606 182 RPEME---FRCFVRGRCLVGIS-QRE-VTMCYPA-----------LS--EKKNDIKVLIQELFDSNVRQEFESEN-YTFD 242 (338)
Q Consensus 182 ~ps~E---FRcFV~~~~LiaIS-Qr~-~~~~y~~-----------L~--~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~D 242 (338)
-..| ++|+| ++++++.. ..- ...+|++ .. ...+++...|.+... .+...+.... +-+|
T Consensus 232 -G~~E~svi~v~v-~g~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~-~~~~aLg~~G~~~vD 308 (367)
T 2pvp_A 232 -GVKEYNLAGCKI-KKDFCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFK-KLYSDLFDGAIIRCD 308 (367)
T ss_dssp -TCEEEEEEEEEE-TTEEEEEEEEETTTTEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHH-HHHTTTSTTCCEEEE
T ss_pred -CCceeeEEEEEE-CCEEEEEEEEEecCCceEcccccccCCCeeEEecCCCCHHHHHHHHHHHH-HHHHHcCCCCEEEEE
Confidence 2389 99999 88744332 211 1123332 11 123556666766665 3444555543 4799
Q ss_pred EEecCCCcEEEEEecCCCCCcCCCcc-chHHHhh
Q 019606 243 VYVTKDERVKILDFNPWGAFTLPLLF-AWEELQQ 275 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~~Td~lLF-sW~el~~ 275 (338)
+.++ +++++++|+||--+.|..-+| ++.+|..
T Consensus 309 f~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~l~~ 341 (367)
T 2pvp_A 309 FFVI-ENEVYLNEINPIPGSLANYLFDDFKTTLE 341 (367)
T ss_dssp EEEE-TTEEEEEEEESSCGGGGGGGSSSHHHHHH
T ss_pred EEEE-CCeEEEEEEeCCCCCCcccccCCHHHHHH
Confidence 9998 789999999997665655555 6666654
No 19
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=90.65 E-value=3.3 Score=40.11 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=81.9
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-.- +...|++.+|+...+..-..-. ...|. .-.+++-+
T Consensus 147 e~~~~~~~~g~PvvvKp~~g~gg~-------Gv~~v~~~~el~~~~~~~~~~~---~~~~~-----------~~~~lvEe 205 (446)
T 3ouz_A 147 AAKKLAKEIGYPVILKAAAGGGGR-------GMRVVENEKDLEKAYWSAESEA---MTAFG-----------DGTMYMEK 205 (446)
T ss_dssp HHHHHHHHHCSSEEEEETTCCTTC-------SEEEECSGGGHHHHHHHHHHHH---HHHHS-----------CCCEEEEE
T ss_pred HHHHHHHHhCCCEEEEECCCCCCC-------CEEEECCHHHHHHHHHHHHHHH---HHhcC-----------CCCEEEEe
Confidence 466777889988999987766222 3456888888766554321111 11121 12367777
Q ss_pred cCCCCCCCceEEEEEe---CCeEEEEeeCCc------cccchhhh--ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEE
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVGISQREV------TMCYPALS--EKKNDIKVLIQELFDSNVRQEFESEN-YTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~LiaISQr~~------~~~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVy 244 (338)
|. .-..|+.+-|- +++++.+..|++ ........ .....+...|.+... .+...+.... +.+|+.
T Consensus 206 ~i---~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~-~~~~~lg~~G~~~ve~~ 281 (446)
T 3ouz_A 206 YI---QNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAI-KAAKAIGYEGAGTFEFL 281 (446)
T ss_dssp CC---SSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHH-HHHHHTTCCEEEEEEEE
T ss_pred CC---CCCcEEEEEEEEcCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHH-HHHHHcCCCCceEEEEE
Confidence 76 22367777765 357777644332 11111111 123445555555554 3334455544 568999
Q ss_pred ecCCCcEEEEEecCCCC
Q 019606 245 VTKDERVKILDFNPWGA 261 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~ 261 (338)
++.++++++||+||=..
T Consensus 282 ~~~~g~~~~iEiNpR~~ 298 (446)
T 3ouz_A 282 VDKNLDFYFIEMNTRLQ 298 (446)
T ss_dssp ECTTCCEEEEEEESSCC
T ss_pred EeCCCCEEEEEeECCCC
Confidence 99878999999999654
No 20
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=90.40 E-value=1.6 Score=41.39 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-..++-. .+...|++.+|+...+..- +... ..-.+++-+
T Consensus 135 ~~~~~~~~~g~P~vvKp~~g~gg-------~Gv~~v~~~~el~~~~~~~----------~~~~--------~~~~~lvEe 189 (403)
T 4dim_A 135 ELKNALENLKLPVIVKATDLQGS-------KGIYIAKKEEEAIDGFNET----------MNLT--------KRDYCIVEE 189 (403)
T ss_dssp HHHHHHHTSCSSEEEECSCC------------CEEESSHHHHHHHHHHH----------HHHC--------SSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEEECCCCCC-------CCEEEECCHHHHHHHHHHH----------HhcC--------cCCcEEEEE
Confidence 46677788998899997665422 2446788888876554321 1110 012357777
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeC--C-cc-ccch---hh--hccHHHHHHHHHHHHHHHhhhhcCCCC--ceEEEEe
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQR--E-VT-MCYP---AL--SEKKNDIKVLIQELFDSNVRQEFESEN--YTFDVYV 245 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr--~-~~-~~y~---~L--~~~~~~i~~~I~~F~~~~i~~~~~~~~--yv~DVyi 245 (338)
|.+ .+..-.++|+++|++..+... . .. .++. +. ....+.+...|.+... .+...+...+ +.+|+.+
T Consensus 190 ~i~--g~e~sv~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~a~-~~~~~lg~~gg~~~ve~~~ 266 (403)
T 4dim_A 190 FIE--GYEFGAQAFVYKNDVLFVMPHGDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVK-KAIKALGLNNCAVNVDMIL 266 (403)
T ss_dssp CCC--SEEEEEEEEEETTEEEEEEEEEEEEEESSSEEEEEEEESCCSCHHHHHHHHHHHH-HHHHHHTCCSEEEEEEEEE
T ss_pred ccC--CcEEEEEEEEECCEEEEEEEecceeccCCCCcceeEEeCCCCCHHHHHHHHHHHH-HHHHHcCCCCCcEEEEEEE
Confidence 873 244455667789987765321 1 10 1110 00 1123455566666554 3444566665 5799988
Q ss_pred cCCCcEEEEEecCCCC
Q 019606 246 TKDERVKILDFNPWGA 261 (338)
Q Consensus 246 ~~~~~v~LID~NPf~~ 261 (338)
+ ++++++||+||--.
T Consensus 267 ~-~~~~~~iEiN~R~~ 281 (403)
T 4dim_A 267 K-DNEVYIIELTGRVG 281 (403)
T ss_dssp E-TTEEEEEEEESSCC
T ss_pred E-CCcEEEEEEcCCCC
Confidence 7 68999999999643
No 21
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=90.31 E-value=2.3 Score=42.23 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+-..++.-......+ . ... .......+++-+
T Consensus 165 e~~~~~~~lg~PvVVKP~~g~gg-------~Gv~iv~~~eel~~a~~~~~~~~~~~----~--~~~--a~~~~~~vlVEe 229 (474)
T 3vmm_A 165 DFRAALEEIGTPLILKPTYLASS-------IGVTLITDTETAEDEFNRVNDYLKSI----N--VPK--AVTFEAPFIAEE 229 (474)
T ss_dssp HHHHHHHHSCSSEEEEESSCCTT-------TTCEEECCTTSHHHHHHHHHHHHTTS----C--CCT--TCCCSCSEEEEE
T ss_pred HHHHHHHHcCCCEEEEECCCCcC-------ceEEEECCHHHHHHHHHHHHHHHhhc----c--ccc--cccCCCeEEEEe
Confidence 46677889998999997655422 23356888777765554322111100 0 000 001123467777
Q ss_pred cCCCCCCC------------ceEEEEEeCCeE--EEEeeCCccccchhh-----hccHHHHHHHHHHHHHHHhhhhcCCC
Q 019606 177 WYPSLRPE------------MEFRCFVRGRCL--VGISQREVTMCYPAL-----SEKKNDIKVLIQELFDSNVRQEFESE 237 (338)
Q Consensus 177 W~~~i~ps------------~EFRcFV~~~~L--iaISQr~~~~~y~~L-----~~~~~~i~~~I~~F~~~~i~~~~~~~ 237 (338)
|. . .+. ...++++.+++. ++++.|....-|... .....++...|.+... .+...+...
T Consensus 230 ~I-~-G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~~~~~~~~~~~~~Pa~l~~~~~~~l~~~a~-~~~~alG~~ 306 (474)
T 3vmm_A 230 FL-Q-GEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAK-KANEGLGLQ 306 (474)
T ss_dssp CC-C-BCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEECCCBTTBCCEEEESCCCCHHHHHHHHHHHH-HHHHHHTCC
T ss_pred CC-C-CceeeeeecccccceeEEEEEEECCeEEEEEEEeeccCCCccceEEEECCCCCHHHHHHHHHHHH-HHHHHcCCC
Confidence 76 2 121 446678999985 455677654222111 0123445555555554 334456677
Q ss_pred Cce--EEEEecCCCcEEEEEecCCC
Q 019606 238 NYT--FDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 238 ~yv--~DVyi~~~~~v~LID~NPf~ 260 (338)
++. +|+.+++++++++||+||=-
T Consensus 307 g~~~~vef~~~~dg~~~~iEvNpR~ 331 (474)
T 3vmm_A 307 NCATHTEIKLMKNREPGLIESAARF 331 (474)
T ss_dssp SEEEEEEEEEEGGGEEEEEEEESSC
T ss_pred CccEEEEEEEcCCCCEEEEEEeCCC
Confidence 776 89999887889999999954
No 22
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=90.17 E-value=4.5 Score=39.02 Aligned_cols=136 Identities=10% Similarity=0.075 Sum_probs=78.3
Q ss_pred HHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccC
Q 019606 99 KESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWY 178 (338)
Q Consensus 99 ~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~ 178 (338)
.++++++|..|+.|-...+-. .+...|++.+|+...++..... ....|. ...+++-+|.
T Consensus 146 ~~~~~~~g~PvvvKp~~g~gg-------~Gv~~v~~~~el~~~~~~~~~~---~~~~~~-----------~~~~lvEe~i 204 (449)
T 2w70_A 146 RAIAKRIGYPVIIKASGGGGG-------RGMRVVRGDAELAQSISMTRAE---AKAAFS-----------NDMVYMEKYL 204 (449)
T ss_dssp HHHHHHHCSSEEEEETTCCTT-------TTCEEECSHHHHHHHHHHHHHH---HHHHHS-----------CCCEEEEECC
T ss_pred HHHHHHhCCcEEEEECCCCCC-------CCEEEeCCHHHHHHHHHHHHHH---HHhhcC-----------CCcEEEEecc
Confidence 667788898899998877622 2446788988876655432111 111221 1246777776
Q ss_pred CCCCCCceEEEEEe---CCeEEEEee------CCccccchhhh--ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEEec
Q 019606 179 PSLRPEMEFRCFVR---GRCLVGISQ------REVTMCYPALS--EKKNDIKVLIQELFDSNVRQEFESEN-YTFDVYVT 246 (338)
Q Consensus 179 ~~i~ps~EFRcFV~---~~~LiaISQ------r~~~~~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVyi~ 246 (338)
....|++|-|- +|+++++.- ++....+.... ...+++...|.+.... +...+.... +.+|+.++
T Consensus 205 ---~g~~e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~-~~~~lg~~G~~~ve~~~~ 280 (449)
T 2w70_A 205 ---ENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAK-ACVDIGYRGAGTFEFLFE 280 (449)
T ss_dssp ---SSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHH-HHHHHTCCEEEEEEEEEE
T ss_pred ---CCCeEEEEEEEEcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHH-HHHHcCCCceEEEEEEEE
Confidence 22478887664 477776643 22211111100 1224455555555543 333455444 46899998
Q ss_pred CCCcEEEEEecCCC
Q 019606 247 KDERVKILDFNPWG 260 (338)
Q Consensus 247 ~~~~v~LID~NPf~ 260 (338)
. +++++||+||=-
T Consensus 281 ~-~~~~viEiN~R~ 293 (449)
T 2w70_A 281 N-GEFYFIEMNTRI 293 (449)
T ss_dssp T-TEEEEEEEECSC
T ss_pred C-CCEEEEEEECCC
Confidence 7 799999999954
No 23
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=88.70 E-value=2.1 Score=41.04 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=79.3
Q ss_pred HHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCCC
Q 019606 102 IESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSL 181 (338)
Q Consensus 102 I~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i 181 (338)
++++|..||.|-....-. -+..+|++.+|+...++ .++.. ...+++-+|. .
T Consensus 184 ~~~lg~PvvVKP~~ggss-------~GV~~v~~~~eL~~a~~----------~a~~~----------~~~vlVEe~I-~- 234 (373)
T 3lwb_A 184 CERLGLPVFVKPARGGSS-------IGVSRVSSWDQLPAAVA----------RARRH----------DPKVIVEAAI-S- 234 (373)
T ss_dssp HHHHCSCEEEEESBCSTT-------TTCEEECSGGGHHHHHH----------HHHTT----------CSSEEEEECC-E-
T ss_pred HHhcCCCEEEEeCCCCCC-------CCEEEeCCHHHHHHHHH----------HHHhc----------CCCEEEeCCC-C-
Confidence 678888899996654322 23467888777654432 12211 1235667776 3
Q ss_pred CCCceEEEEEeC-C----eEEEEeeCCc---cc----cchhhh-------------ccHHHHHHHHHHHHHHHhhhhcCC
Q 019606 182 RPEMEFRCFVRG-R----CLVGISQREV---TM----CYPALS-------------EKKNDIKVLIQELFDSNVRQEFES 236 (338)
Q Consensus 182 ~ps~EFRcFV~~-~----~LiaISQr~~---~~----~y~~L~-------------~~~~~i~~~I~~F~~~~i~~~~~~ 236 (338)
..|++|-|-. + ....+...-. .. +|++-. ...+++...|.+... .+...+..
T Consensus 235 --G~E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~-~~~~aLg~ 311 (373)
T 3lwb_A 235 --GRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAI-RAFAAIDC 311 (373)
T ss_dssp --EEEEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHH-HHHHHTTC
T ss_pred --CeEEEEEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHHHHHHHHHHH-HHHHHhCC
Confidence 7999998863 2 2223333222 12 554421 123456666666665 33345655
Q ss_pred CCc-eEEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 237 ENY-TFDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 237 ~~y-v~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
..+ -+|+.++.+++ +|+|+||.-+.|..-+|
T Consensus 312 ~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~ 343 (373)
T 3lwb_A 312 RGLARVDFFLTDDGP-VINEINTMPGFTTISMY 343 (373)
T ss_dssp CSEEEEEEEEETTEE-EEEEEESSCCCSTTSHH
T ss_pred ccEEEEEEEEECCCC-EEEEecCCCCCCcccHH
Confidence 555 49999998778 99999998766655444
No 24
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=87.10 E-value=5.3 Score=38.21 Aligned_cols=119 Identities=11% Similarity=0.161 Sum_probs=65.8
Q ss_pred CcccccCHHHHHHHhhcchhHHH-HHhhhhhhcCCCCCCCCCceEEEEeccCCCCCCCceEEEEEeCCeE--EEEeeCCc
Q 019606 128 GTLRCTSFCEIVLLLRSSDSLVH-DLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCL--VGISQREV 204 (338)
Q Consensus 128 ~sl~c~s~~DV~lLLksS~~i~~-DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~i~ps~EFRcFV~~~~L--iaISQr~~ 204 (338)
+...|++.+|+-..++.-..... ++.. +. .....+++.+|. + -+.....+++.+|++ +++++|..
T Consensus 160 Gv~~v~~~~el~~a~~~~~~~~~~~~~~-~~---------~~~~~~lvEe~i-~-G~e~sv~~~~~~g~~~~~~~~~~~~ 227 (425)
T 3vot_A 160 GVVRVDDRKELEEAVRKVEAVNQRDLNR-FV---------HGKTGIVAEQFI-D-GPEFAIETLSIQGNVHVLSIGYKGN 227 (425)
T ss_dssp -CEEECSHHHHHHHHHHHHHHTTSSHHH-HH---------TTCCCEEEEECC-C-SCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CceEechHHHHHHHHHHHHhhhhhhhhh-hc---------cCCCcEEEEEEe-c-CcEEEEEEEEeCCcEEEEeEEEEec
Confidence 45679999988665543211110 1111 10 012346777787 2 233334567778874 56777665
Q ss_pred ccc--chhh---h--ccHHHHHHHHHHHHHHHhhhhcCCC--CceEEEEecCCCcEEEEEecCC
Q 019606 205 TMC--YPAL---S--EKKNDIKVLIQELFDSNVRQEFESE--NYTFDVYVTKDERVKILDFNPW 259 (338)
Q Consensus 205 ~~~--y~~L---~--~~~~~i~~~I~~F~~~~i~~~~~~~--~yv~DVyi~~~~~v~LID~NPf 259 (338)
+.. +... . ...+++...|.+.... +...+... -+-+|+.+++++++++||+||=
T Consensus 228 ~~~~~~~~~~~~~Pa~l~~~~~~~i~~~~~~-~~~alg~~~G~~~ve~~~~~dG~~~~iEiN~R 290 (425)
T 3vot_A 228 SKGPFFEEGVYIAPAQLKEETRLAIVKEVTG-AVSALGIHQGPAHTELRLDKDGTPYVIEVGAR 290 (425)
T ss_dssp CCCSBCCCCEEEESCCCCHHHHHHHHHHHHH-HHHHTTCCSEEEEEEEEECTTCCEEEEEEESS
T ss_pred cCCCccccceEeecccCCHHHHHHHHHHHHH-HHHHcCCCcceEEEEEEEEeCCcEEEEEEecC
Confidence 321 1111 0 1234556666666553 33445543 3458999998889999999994
No 25
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=87.00 E-value=5.3 Score=37.03 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=52.3
Q ss_pred EEEEeccCCCCCCCceEEEEEeCCe---EEEEeeCCc-cccchhhh-------------ccHHHHHHHHHHHHHHHhhhh
Q 019606 171 FLALRKWYPSLRPEMEFRCFVRGRC---LVGISQREV-TMCYPALS-------------EKKNDIKVLIQELFDSNVRQE 233 (338)
Q Consensus 171 ~LvLrkW~~~i~ps~EFRcFV~~~~---LiaISQr~~-~~~y~~L~-------------~~~~~i~~~I~~F~~~~i~~~ 233 (338)
.+++-+|. . -..|++|.|-.++ .+.+..+.. ..+|++-. ...+++...|.+... .+...
T Consensus 188 ~vlvEe~I-~--G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~l~~~~~~~i~~~a~-~~~~a 263 (322)
T 2fb9_A 188 KAVVEKAL-S--PVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQELAL-KAYKV 263 (322)
T ss_dssp EEEEEECC-S--SCEEEEEEEESSSSCEEEEEEEEEEECCEEETTTEEECCEEEEESSCCCCTTHHHHHHHHHH-HHHHH
T ss_pred eEEEEeCC-C--CCeeEEEEEEeCCCceEeeeEEEeeCCCccCHHHcccCCCeEEEeCCCCCHHHHHHHHHHHH-HHHHH
Confidence 56777776 2 2289999997552 443332211 11332211 012334444555444 23334
Q ss_pred cCCCC-ceEEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 234 FESEN-YTFDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 234 ~~~~~-yv~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+.... +-+|+.++ +++++|+|+||..+.|..-+|
T Consensus 264 lg~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s~~ 298 (322)
T 2fb9_A 264 LGVRGMARVDFFLA-EGELYLNELNTIPGFTPTSMY 298 (322)
T ss_dssp HTCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSCHH
T ss_pred hCCceEEEEEEEEE-CCcEEEEEEECCCCCCcccHH
Confidence 55434 46999998 889999999997666654444
No 26
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=85.26 E-value=1.9 Score=40.34 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCCC-CceEEEEecCCCcEEEEEecCCCCCcCCCcc
Q 019606 216 NDIKVLIQELFDSNVRQEFESE-NYTFDVYVTKDERVKILDFNPWGAFTLPLLF 268 (338)
Q Consensus 216 ~~i~~~I~~F~~~~i~~~~~~~-~yv~DVyi~~~~~v~LID~NPf~~~Td~lLF 268 (338)
+++...|.+... .+...+... -+-+|+.++++++++|+|+||..+.|..-+|
T Consensus 266 ~~~~~~i~~~a~-~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~~ 318 (343)
T 1e4e_A 266 AEERGRIQETVK-KIYKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRY 318 (343)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCEEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred HHHHHHHHHHHH-HHHHHcCCceEEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 345555555555 233345543 3468999988889999999997666654444
No 27
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=84.61 E-value=7.1 Score=37.25 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...++. + + .. .....+++-+
T Consensus 127 ~~~~~~~~~~~P~vvKp~~~~gg-------~Gv~~v~~~~el~~~~~~-------~---~----~~----~~~~~~lvEe 181 (417)
T 2ip4_A 127 EALAYLEEVGVPVVVKDSGLAAG-------KGVTVAFDLHQAKQAVAN-------I---L----NR----AEGGEVVVEE 181 (417)
T ss_dssp HHHHHHHHHCSSEEEECTTSCSS-------TTCEEESCHHHHHHHHHH-------H---T----TS----SSCCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEECCCCCC-------CCEEEeCCHHHHHHHHHH-------H---H----hh----ccCCeEEEEE
Confidence 46667788888899997766521 244678888887654421 1 1 00 0113467788
Q ss_pred cCCCCCCCceEEEEEe-CCe-EEEEe--eCCccccchh-----------hh--ccHHHHHHHH-HHHHHH---Hhhh-hc
Q 019606 177 WYPSLRPEMEFRCFVR-GRC-LVGIS--QREVTMCYPA-----------LS--EKKNDIKVLI-QELFDS---NVRQ-EF 234 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~~~-LiaIS--Qr~~~~~y~~-----------L~--~~~~~i~~~I-~~F~~~---~i~~-~~ 234 (338)
|. . ..||++.+- +|+ +..++ |++. ..++. +. ...+++.+.+ .+.... .+.. .+
T Consensus 182 ~i-~---g~E~sv~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 256 (417)
T 2ip4_A 182 YL-E---GEEATVLALTDGETILPLLPSQDHK-RLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGV 256 (417)
T ss_dssp CC-C---SCEEEEEEEESSSCEEECCCBEECC-EEETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTC
T ss_pred Cc-c---CcEEEEEEEEeCCEEEEcchheech-hhccCCCCCcCCCCeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 87 3 569999875 665 44332 4332 22111 00 1223344333 222221 1211 12
Q ss_pred CC-CCceEEEEecCCCcEEEEEecCCC
Q 019606 235 ES-ENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 235 ~~-~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
.. .-+-+|+.++.++ ++++|+||--
T Consensus 257 ~~~G~~~ve~~~~~~g-~~viEiN~R~ 282 (417)
T 2ip4_A 257 VYRGVVYAGLMLTREG-PKVLEFNARF 282 (417)
T ss_dssp CCCEEEEEEEEECSSC-EEEEEEESSC
T ss_pred CceEEEEEEEEEeCCC-eEEEEEecCC
Confidence 32 2246999998877 9999999954
No 28
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=83.48 E-value=6.3 Score=40.54 Aligned_cols=137 Identities=14% Similarity=0.088 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
++.++.+++|..|+.|-...+-.- +-..|++.+|+...+..-. ..-. .-.+++-+
T Consensus 235 ea~~~a~~iGyPvVVKp~~GgGGk-------Gv~iV~s~eEL~~a~~~a~----------~~~~--------~~~vlVEe 289 (587)
T 3jrx_A 235 EGLEAAERIGFPLMIKASEGGGGK-------GIRKAESAEDFPILFRQVQ----------SEIP--------GSPIFLMK 289 (587)
T ss_dssp HHHHHHHHHCSSEEEEETTCCSSS-------SEEEECSTTTHHHHHHHHH----------HHST--------TCCEEEEE
T ss_pred HHHHHHHhcCCeEEEEeCCCCCCC-------CeEEeCCHHHHHHHHHHHH----------hhcc--------CCCEEEEE
Confidence 456677889999999987665222 2346788777655543211 1100 12467788
Q ss_pred cCCCCCCCceEEEEEe-C--CeEEEEe------eCCccccchhhhc--cHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEE
Q 019606 177 WYPSLRPEMEFRCFVR-G--RCLVGIS------QREVTMCYPALSE--KKNDIKVLIQELFDSNVRQEFESEN-YTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~--~~LiaIS------Qr~~~~~y~~L~~--~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVy 244 (338)
|. ...+|+.|-|- + |+++.+. ||....+.+.... ...+++..|.+.... +...+...+ ..+|+.
T Consensus 290 yI---~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~~l~~~~~~~i~~~A~~-~a~alGy~G~~~VEfl 365 (587)
T 3jrx_A 290 LA---QHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIR-LAKTVGYVSAGTVEYL 365 (587)
T ss_dssp CC---CSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHH-HHHHHTCCEEEEEEEE
T ss_pred ec---CCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCCCCCHHHHHHHHHHHHH-HHHHcCCcceeEEEEE
Confidence 86 33478887775 2 6777764 4433222211111 134555555555542 333444433 468999
Q ss_pred ecCCCcEEEEEecCCCCC
Q 019606 245 VTKDERVKILDFNPWGAF 262 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~~ 262 (338)
++.++++++||+||=-..
T Consensus 366 ~d~dG~~yflEINpRl~~ 383 (587)
T 3jrx_A 366 YSQDGSFHFLELNPRLQV 383 (587)
T ss_dssp ECSSSCEEEEEEESSCCT
T ss_pred EeCCCCEEEEEEeCCCCC
Confidence 988889999999996543
No 29
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=83.29 E-value=8.6 Score=38.63 Aligned_cols=134 Identities=11% Similarity=0.059 Sum_probs=76.6
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
++.++++++|..|+.|-...+-. .+...|++.+|+...++.- +..- ....+++-+
T Consensus 225 e~~~~~~~~g~PvVvKp~~g~gg-------~Gv~~v~~~~el~~a~~~~----------~~~~--------~~~~vlvEe 279 (554)
T 1w96_A 225 DGLQKAKRIGFPVMIKASEGGGG-------KGIRQVEREEDFIALYHQA----------ANEI--------PGSPIFIMK 279 (554)
T ss_dssp HHHHHHHHHCSSEEEEETTCCTT-------TTEEEECSHHHHHHHHHHH----------HHHS--------TTCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEECCCCCC-------ceEEEECCHHHHHHHHHHH----------Hhhc--------cCCCEEEEE
Confidence 35566788998999997776522 2345688888876554321 1110 012467777
Q ss_pred cCCCCCCCceEEEEEe-C--CeEEEE------eeCCccccchhhh--ccHHHHHHHHHHHHHHHhhhhcCCC-CceEEEE
Q 019606 177 WYPSLRPEMEFRCFVR-G--RCLVGI------SQREVTMCYPALS--EKKNDIKVLIQELFDSNVRQEFESE-NYTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~--~~LiaI------SQr~~~~~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVy 244 (338)
|. ....|+.|.|- + |+++++ .|+....+.+.-. ....++...|.+.... +...+... -+.+|+.
T Consensus 280 ~i---~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k~~~~~P~~~l~~~~~~~i~~~a~~-~~~alg~~G~~~ve~~ 355 (554)
T 1w96_A 280 LA---GRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVR-LGKLVGYVSAGTVEYL 355 (554)
T ss_dssp CC---CSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHH-HHHHHTCCEEEEEEEE
T ss_pred ec---CCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccceeeeCCCcCCCHHHHHHHHHHHHH-HHHHcCCcceEEEEEE
Confidence 76 23468887764 3 577764 3443212111100 0123455555554442 33344443 3478999
Q ss_pred ec-CCCcEEEEEecCC
Q 019606 245 VT-KDERVKILDFNPW 259 (338)
Q Consensus 245 i~-~~~~v~LID~NPf 259 (338)
++ .++++++||+||=
T Consensus 356 ~~~~dg~~~~iEiN~R 371 (554)
T 1w96_A 356 YSHDDGKFYFLELNPR 371 (554)
T ss_dssp ECTTTCCEEEEEEECS
T ss_pred EECCCCCEEEEEeeCC
Confidence 97 6789999999993
No 30
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=82.55 E-value=16 Score=34.43 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-....- ++ .+...|++.+|+-..++.. . + ..+++-+
T Consensus 138 ~~~~~~~~~g~P~vvKp~~~~~-~g-----~Gv~~v~~~~el~~~~~~~-----------~---~--------~~~lvEe 189 (389)
T 3q2o_A 138 QLTEAIAELSYPSVLKTTTGGY-DG-----KGQVVLRSEADVDEARKLA-----------N---A--------AECILEK 189 (389)
T ss_dssp HHHHHHHHHCSSEEEEESSCCS-SS-----CCEEEESSGGGHHHHHHHH-----------H---H--------SCEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCC-CC-----CCeEEECCHHHHHHHHHhc-----------C---C--------CCEEEEe
Confidence 4667788899889999765421 10 1345677777765544321 0 0 1356777
Q ss_pred cCCCCCCCceEEEEEe-C--CeEEE--EeeCCc-cccch-hhh--ccHHHHHHHHHHHHHHHhhhhcCCC-CceEEEEec
Q 019606 177 WYPSLRPEMEFRCFVR-G--RCLVG--ISQREV-TMCYP-ALS--EKKNDIKVLIQELFDSNVRQEFESE-NYTFDVYVT 246 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~--~~Lia--ISQr~~-~~~y~-~L~--~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVyi~ 246 (338)
|. .-..|++|.|- + |+++. +.+... ...+. .+. ...+++...+.+... .+...+... -+-+|+.++
T Consensus 190 ~i---~g~~E~~v~~~~~~~G~~~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~~~~~a~-~~~~~lg~~G~~~ve~~~~ 265 (389)
T 3q2o_A 190 WV---PFEKEVSVIVIRSVSGETKVFPVAENIHVNNILHESIVPARITEELSQKAIAYAK-VLADELELVGTLAVEMFAT 265 (389)
T ss_dssp CC---CCSEEEEEEEEECTTCCEEECCCEEEEEETTEEEEEEESCSSCHHHHHHHHHHHH-HHHHHTTCCEEEEEEEEEC
T ss_pred cc---cCceEEEEEEEEcCCCCEEEecCeeeEEcCCceEEEECCCCCCHHHHHHHHHHHH-HHHHHcCCeeEEEEEEEEe
Confidence 76 24589999874 3 54433 333211 11111 111 123455566666655 344455554 346999999
Q ss_pred CCCcEEEEEecCCCCCcCCC
Q 019606 247 KDERVKILDFNPWGAFTLPL 266 (338)
Q Consensus 247 ~~~~v~LID~NPf~~~Td~l 266 (338)
++++++++|+||--..|+..
T Consensus 266 ~dg~~~viEiNpR~~~s~~~ 285 (389)
T 3q2o_A 266 ADGEIYINELAPRPHNSGHY 285 (389)
T ss_dssp TTSCEEEEEEESSCCGGGTT
T ss_pred CCCCEEEEEeeCCCCCchhH
Confidence 88899999999976555443
No 31
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=81.49 E-value=6.2 Score=39.98 Aligned_cols=137 Identities=13% Similarity=0.079 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
++.++.+++|..|+.|-...+-.- +-..|++.+|+-..+..- ..... .-.+++-+
T Consensus 219 ea~~~a~~igyPvVVKp~~ggGG~-------Gv~iv~~~~eL~~a~~~~----------~~~~~--------~~~vlVEe 273 (540)
T 3glk_A 219 EGLEAAERIGFPLMIKASEGGGGK-------GIRKAESAEDFPILFRQV----------QSEIP--------GSPIFLMK 273 (540)
T ss_dssp HHHHHHHHHCSSEEEEETTCC-----------EEEECSTTTHHHHHHHH----------HHHST--------TCCEEEEE
T ss_pred HHHHHHHhcCCcEEEEECCCCCCC-------CEEEECCHHHHHHHHHHH----------Hhhcc--------CCCEEEEE
Confidence 456677889989999987755221 234677777765554321 11100 12467777
Q ss_pred cCCCCCCCceEEEEEe-C--CeEEEEeeCC------ccccchhhhc--cHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEE
Q 019606 177 WYPSLRPEMEFRCFVR-G--RCLVGISQRE------VTMCYPALSE--KKNDIKVLIQELFDSNVRQEFESEN-YTFDVY 244 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~--~~LiaISQr~------~~~~y~~L~~--~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVy 244 (338)
|. ...+|+.|-|- + |+++.+.-|+ ...+.+.-.. ...+++..+.+... .+...+...+ ..+|+.
T Consensus 274 ~I---~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~-~~~~alG~~G~~~VEf~ 349 (540)
T 3glk_A 274 LA---QHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI-RLAKTVGYVSAGTVEYL 349 (540)
T ss_dssp CC---SSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHH-HHHHHHTCCEEEEEEEE
T ss_pred ec---CCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHH-HHHHHcCCccceEEEEE
Confidence 76 33478888775 3 6777764443 3222111111 13445555555544 2333444433 468999
Q ss_pred ecCCCcEEEEEecCCCCC
Q 019606 245 VTKDERVKILDFNPWGAF 262 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~~ 262 (338)
++.+++++++|+||=-..
T Consensus 350 ~d~dg~~~~lEiNpR~~~ 367 (540)
T 3glk_A 350 YSQDGSFHFLELNPRLQV 367 (540)
T ss_dssp EETTSCEEEEEEECSCCT
T ss_pred EcCCCCEEEEEEECCCCC
Confidence 988889999999996543
No 32
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=80.34 E-value=15 Score=32.68 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCccccc-CHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCT-SFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~-s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
.+.+.++++| .|+.|-...+-.- +..+|+ +.+++-.++.. + . . .....+++-
T Consensus 146 ~~~~~~~~~~-p~vvKP~~g~~g~-------Gv~~v~~~~~~l~~~~~~-------~----~---~-----~~~~~~lvq 198 (316)
T 1gsa_A 146 QLKAFWEKHS-DIILKPLDGMGGA-------SIFRVKEGDPNLGVIAET-------L----T---E-----HGTRYCMAQ 198 (316)
T ss_dssp HHHHHHHHHS-SEEEECSSCCTTT-------TCEEECTTCTTHHHHHHH-------H----T---T-----TTTSCEEEE
T ss_pred HHHHHHHHcC-CEEEEECCCCCcc-------cEEEecCChHHHHHHHHH-------H----H---h-----cCCceEEEe
Confidence 4666777888 8999977665322 334554 44443222210 1 0 0 001246778
Q ss_pred ccCCCCCCCceEEEEEeCCeEEE-EeeC
Q 019606 176 KWYPSLRPEMEFRCFVRGRCLVG-ISQR 202 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~~~~Lia-ISQr 202 (338)
+|. ...+..|+||+|.+|++++ +-.|
T Consensus 199 e~i-~~~~~~~~~v~~~~g~~~~~~~~r 225 (316)
T 1gsa_A 199 NYL-PAIKDGDKRVLVVDGEPVPYCLAR 225 (316)
T ss_dssp ECC-GGGGGCEEEEEEETTEECSEEEEE
T ss_pred ccc-CCCCCCCEEEEEECCEEeeeEEEE
Confidence 887 4434799999999999887 4443
No 33
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=78.22 E-value=10 Score=36.38 Aligned_cols=137 Identities=11% Similarity=0.088 Sum_probs=72.7
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...+..-.. ..+ .....+++-+
T Consensus 147 ~~~~~~~~~g~P~vvKp~~g~gg-------~Gv~~v~~~~el~~~~~~~~~------~~~----------~~~~~~lvEe 203 (433)
T 2dwc_A 147 ELYEACEKIGYPCHTKAIMSSSG-------KGSYFVKGPEDIPKAWEEAKT------KAR----------GSAEKIIVEE 203 (433)
T ss_dssp HHHHHHHHHCSSEEEEECCC-------------EEECSGGGHHHHHHC-------------------------CCEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCCcCC-------CCeEEECCHHHHHHHHHHHHh------hcc----------cCCCCEEEEc
Confidence 46667788888899997765422 234567777776554432110 000 0112467788
Q ss_pred cCCCCCCCceEEEEEe-----CCeEE--EEe-eCCccccchhhh-----ccHHHHHHHHHHHHHHHhhhhcCC-CCceEE
Q 019606 177 WYPSLRPEMEFRCFVR-----GRCLV--GIS-QREVTMCYPALS-----EKKNDIKVLIQELFDSNVRQEFES-ENYTFD 242 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-----~~~Li--aIS-Qr~~~~~y~~L~-----~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~D 242 (338)
|. .. ..|+++.+- +|+++ .+. +.+....+++.. ...+++...+.+.... +...+.. .-+-+|
T Consensus 204 ~i-~~--g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~-~~~~lg~~G~~~ve 279 (433)
T 2dwc_A 204 HI-DF--DVEVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKR-ITDVLGGLGIFGVE 279 (433)
T ss_dssp CC-CC--SEEEEECCEEEECTTSCEEEEEECCEEEEESSSSEEEEEESCCCCHHHHHHHHHHHHH-HHHHHCSSEECEEE
T ss_pred cC-CC--CeeEEEEEEecccCCCCEeEEEecccceEEEcCEEEEEEcCCCCCHHHHHHHHHHHHH-HHHHcCCeeEEEEE
Confidence 87 32 789999864 67632 111 111111122211 1234455555555543 3333433 345789
Q ss_pred EEecCCCcEEEEEecCCCC
Q 019606 243 VYVTKDERVKILDFNPWGA 261 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~ 261 (338)
+.++.+ +++++|+||--.
T Consensus 280 ~~~~~~-~~~viEiN~R~~ 297 (433)
T 2dwc_A 280 MFVKGD-KVWANEVSPRPH 297 (433)
T ss_dssp EEEETT-EEEEEEEESSCC
T ss_pred EEEeCC-cEEEEEEeCCcC
Confidence 999876 999999999643
No 34
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=76.82 E-value=3.3 Score=43.17 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=74.6
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|-.|+.|-...+-. .+...|.+.+|+...+..-..-.. .+|. .-.+++-+|
T Consensus 170 ~~~~a~~igyPvvvKp~~G~Gg-------~Gv~iv~~~~el~~a~~~~~~ea~---~~fg-----------~~~vlvEey 228 (675)
T 3u9t_A 170 FRREAGRIGYPVLLKAAAGGGG-------KGMKVVEREAELAEALSSAQREAK---AAFG-----------DARMLVEKY 228 (675)
T ss_dssp HHHHHHHSCSSBCCBCCC-------------CCCBCCTTTHHHHHSCCCC----------------------CCCBCCBC
T ss_pred HHHHHHhCCCcEEEEECCCCCC-------ccEEEECCHHHHHHHHHHHHHHHH---HhcC-----------CCcEEEEee
Confidence 5566678887888886655521 234567777776655543221110 0110 123566777
Q ss_pred CCCCCCCceEEEEEe-CCeEEEEee------CCccccchhhhc--cHHHHHHHHHHHHHHHhhhhcCC-CCceEEEEecC
Q 019606 178 YPSLRPEMEFRCFVR-GRCLVGISQ------REVTMCYPALSE--KKNDIKVLIQELFDSNVRQEFES-ENYTFDVYVTK 247 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~-~~~LiaISQ------r~~~~~y~~L~~--~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DVyi~~ 247 (338)
. .-....|+-+|.- +|+++.+.. |......+.-.. ....++..|.+.... +...+.. .-+.+|+.++.
T Consensus 229 I-~g~reiev~v~~d~~G~vv~l~~rd~s~qr~~qk~ie~~Pa~~l~~~~~~~l~~~a~~-~~~alg~~G~~~vEf~~~~ 306 (675)
T 3u9t_A 229 L-LKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVR-AAQAIGYVGAGTVEFLLDE 306 (675)
T ss_dssp C-SSCBCEEEEEEECSSSCEEEEEEEECCCBSSSSBCEEEESCSSCCHHHHHHHHHHHHH-HHHHTTCCSEEEEECCBCT
T ss_pred c-CCCcEEEEEEEEcCCCCEEEEeccccceeeccceEEEECCCCCCCHHHHHHHHHHHHH-HHHHcCCccceEEEEEEcC
Confidence 6 3333334444442 568888754 433222211111 234555566665553 3334444 33578999988
Q ss_pred CCcEEEEEecCCCC
Q 019606 248 DERVKILDFNPWGA 261 (338)
Q Consensus 248 ~~~v~LID~NPf~~ 261 (338)
++++++||+||=..
T Consensus 307 dG~~~~iEiNpR~~ 320 (675)
T 3u9t_A 307 RGQFFFMEMNTRLQ 320 (675)
T ss_dssp TSCBCBCEEESSCC
T ss_pred CCCEEEEecccccc
Confidence 78899999999764
No 35
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=74.89 E-value=9.1 Score=36.78 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=53.6
Q ss_pred eEEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCccccchh-hh-------ccHHHHHHHHHHHHHHHhhhhc-CCCCce
Q 019606 170 FFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPA-LS-------EKKNDIKVLIQELFDSNVRQEF-ESENYT 240 (338)
Q Consensus 170 ~~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~-L~-------~~~~~i~~~I~~F~~~~i~~~~-~~~~yv 240 (338)
.++++-+|. + +.+-.||||-+++.+|.--|.....|.. +. +..+++++ ... .....+ ..+=+-
T Consensus 206 ~~~~vQefI-~--~g~DiRv~VVGg~vva~~R~~~~g~wrtN~~~~~~e~~~l~~e~~~----la~-~Aa~a~gGldi~G 277 (344)
T 2p0a_A 206 TYATTEAFI-D--SKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRL----WVD-SCSEMFGGLDICA 277 (344)
T ss_dssp CCEEEEECC-C--EEEEEEEEEETTEEEEEEEEESSSCSSTTSSSEEEEEECCCHHHHH----HHH-HHTTGGGCCSEEE
T ss_pred CeEEEEecc-C--CCccEEEEEECCEEEEEEEecCCCCCeecCCceEEEeeCCCHHHHH----HHH-HHHHHhCCCCEEE
Confidence 356788998 5 6899999999999998644321122211 11 11233322 222 334457 577889
Q ss_pred EEEEecCCCcEEEEEecC
Q 019606 241 FDVYVTKDERVKILDFNP 258 (338)
Q Consensus 241 ~DVyi~~~~~v~LID~NP 258 (338)
+|+...++++.+++|+|.
T Consensus 278 VDll~~~~G~~~VlEVN~ 295 (344)
T 2p0a_A 278 VKAVHSKDGRDYIIEVMD 295 (344)
T ss_dssp EEEEEETTSCEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEEcC
Confidence 999988888899999999
No 36
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=73.92 E-value=12 Score=35.11 Aligned_cols=136 Identities=10% Similarity=0.000 Sum_probs=71.6
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...++.-. ...+. ....+++-+
T Consensus 139 ~~~~~~~~~g~P~vvKp~~g~gg-------~Gv~~v~~~~el~~~~~~~~------~~~~~----------~~~~~lvEe 195 (391)
T 1kjq_A 139 LFREAVADIGYPCIVKPVMSSSG-------KGQTFIRSAEQLAQAWKYAQ------QGGRA----------GAGRVIVEG 195 (391)
T ss_dssp HHHHHHHHHCSSEEEEESCC----------CCCEEECSGGGHHHHHHHHH------HHSGG----------GCCCEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCCC-------CCeEEECCHHHHHHHHHHHH------hhccc----------CCCCEEEEE
Confidence 46677788888899997755422 23456777777654443210 00010 012467777
Q ss_pred cCCCCCCCceEEEEEe-C-CeEEEE-eeCCccccchhh---h--ccHHHHHHHHHHHHHHHhhhhcCC-CCceEEEEecC
Q 019606 177 WYPSLRPEMEFRCFVR-G-RCLVGI-SQREVTMCYPAL---S--EKKNDIKVLIQELFDSNVRQEFES-ENYTFDVYVTK 247 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~-~~LiaI-SQr~~~~~y~~L---~--~~~~~i~~~I~~F~~~~i~~~~~~-~~yv~DVyi~~ 247 (338)
|. . ...|+++.+- + +...-+ .+.+....+++- . ...+++...|.+.... +...+.. .-+-+|+.++.
T Consensus 196 ~i-~--~g~E~sv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~-~~~~lg~~G~~~ve~~~~~ 271 (391)
T 1kjq_A 196 VV-K--FDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESWQPQQMSPLALERAQEIARK-VVLALGGYGLFGVELFVCG 271 (391)
T ss_dssp CC-C--CSEEEEEEEEEETTEEEECCCEEEEEETTEEEEEEECCCCCHHHHHHHHHHHHH-HHHHHCSSEEEEEEEEEET
T ss_pred ec-C--CCeEEEEEEEEeCCCeEEccCcceEEECCEEEEEEeCCCCCHHHHHHHHHHHHH-HHHHcCCeeEEEEEEEEeC
Confidence 87 3 2789998874 2 222111 111111112111 0 1234445555555442 2233433 34578999987
Q ss_pred CCcEEEEEecCCC
Q 019606 248 DERVKILDFNPWG 260 (338)
Q Consensus 248 ~~~v~LID~NPf~ 260 (338)
+ +++++|+||=-
T Consensus 272 ~-~~~viEiN~R~ 283 (391)
T 1kjq_A 272 D-EVIFSEVSPRP 283 (391)
T ss_dssp T-EEEEEEEESSC
T ss_pred C-cEEEEEEECCC
Confidence 6 99999999943
No 37
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=73.03 E-value=15 Score=35.25 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=74.7
Q ss_pred HHHHHHHHHhCCeeeeecccCC-CCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEE
Q 019606 96 LKIKESIESLGGAVFPKLNWSA-PKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLAL 174 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwss-PkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvL 174 (338)
+.+.++++++|..|+.|-...+ -.- +...|++.+|+-..+. ...+ -.+++
T Consensus 150 ~~~~~~~~~~g~P~VvKp~~gg~~g~-------Gv~~v~~~~el~~a~~--------------~~~~--------~~~lv 200 (403)
T 3k5i_A 150 AELAKVGEQLGYPLMLKSKTMAYDGR-------GNFRVNSQDDIPEALE--------------ALKD--------RPLYA 200 (403)
T ss_dssp HHHHHHHHHHCSSEEEEESSSCCTTT-------TEEEECSTTSHHHHHH--------------HTTT--------SCEEE
T ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCC-------CEEEECCHHHHHHHHH--------------hcCC--------CcEEE
Confidence 3467788899988999975332 111 3455777766554442 1111 13567
Q ss_pred eccCCCCCCCceEEEEEeC---C-eEEEE---eeCCccccchhhh-c-cHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEE
Q 019606 175 RKWYPSLRPEMEFRCFVRG---R-CLVGI---SQREVTMCYPALS-E-KKNDIKVLIQELFDSNVRQEFESEN-YTFDVY 244 (338)
Q Consensus 175 rkW~~~i~ps~EFRcFV~~---~-~LiaI---SQr~~~~~y~~L~-~-~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVy 244 (338)
-+|. .-..|+.|.|-. + ....+ -|++-........ . ..+++...+.+... .+...+.... +-+|+.
T Consensus 201 Ee~i---~~~~E~sv~v~~~~~g~~~~p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~-~i~~~Lg~~G~~~ve~~ 276 (403)
T 3k5i_A 201 EKWA---YFKMELAVIVVKTKDEVLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELAR-KAVAAFDGKGVFGVEMF 276 (403)
T ss_dssp EECC---CEEEEEEEEEEECSSCEEECCCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHH-HHHHTSCCSEEEEEEEE
T ss_pred ecCC---CCCeEEEEEEEEcCCCEEEeCCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHH-HHHHHcCCeeEEEEEEE
Confidence 7776 235888888742 2 12111 2332110000111 1 23455555666554 3444554433 358999
Q ss_pred ecCCCcEEEEEecCCCCCc
Q 019606 245 VTKDERVKILDFNPWGAFT 263 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~~T 263 (338)
++++++++++|+||=-..|
T Consensus 277 ~~~dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 277 LLEDDSIMLCEIASRIHNS 295 (403)
T ss_dssp EETTSCEEEEEEESSCCGG
T ss_pred EeCCCcEEEEEeecCCCCC
Confidence 9988899999999975433
No 38
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=72.74 E-value=23 Score=34.28 Aligned_cols=138 Identities=11% Similarity=0.078 Sum_probs=76.6
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|+|.+|+...++.-.. ...|.. ....+++-+
T Consensus 133 ea~~~~~~~g~PvVvKp~~~~gg-------~GV~iv~~~~el~~a~~~~~~-----~~~~g~---------~~~~vlvEe 191 (431)
T 3mjf_A 133 AALAYVRQKGAPIVIKADGLAAG-------KGVIVAMTQEEAETAVNDMLA-----GNAFGD---------AGHRIVVEE 191 (431)
T ss_dssp HHHHHHHHHCSSEEEEESSSCTT-------CSEEEECSHHHHHHHHHHHHT-----THHHHC---------CCCCEEEEE
T ss_pred HHHHHHHHcCCeEEEEECCCCCC-------CcEEEeCCHHHHHHHHHHHHh-----hccccC---------CCCeEEEEE
Confidence 35667788999999998766522 244678888887665532110 011221 012467777
Q ss_pred cCCCCCCCceEEEEEe-C-CeEEE--EeeCCccccchh------------hhc--cHHHHHHHHHHH----HHHHhh-hh
Q 019606 177 WYPSLRPEMEFRCFVR-G-RCLVG--ISQREVTMCYPA------------LSE--KKNDIKVLIQEL----FDSNVR-QE 233 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~-~~Lia--ISQr~~~~~y~~------------L~~--~~~~i~~~I~~F----~~~~i~-~~ 233 (338)
|. . ..||.+++- + ++++. .+|++. ..|++ ... ..+++.+.+.+. ..+.++ ..
T Consensus 192 ~i-~---G~E~sv~~~~dg~~~~~~~~~~~~~-~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g 266 (431)
T 3mjf_A 192 FL-D---GEEASFIVMVDGENVLPMATSQDHK-RVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEG 266 (431)
T ss_dssp CC-C---SEEEEEEEEEESSCEEECCCBEECC-EEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred ee-C---CcEEEEEEEEcCCEEEEEEeeEece-ecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77 3 579988875 3 35554 345433 33321 000 223344444432 221111 12
Q ss_pred cCCCC-ceEEEEecCCCcEEEEEecCCC
Q 019606 234 FESEN-YTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 234 ~~~~~-yv~DVyi~~~~~v~LID~NPf~ 260 (338)
++... +-+|+.++.++++++||+||--
T Consensus 267 ~~~~G~~~ve~~~~~~g~~~viEiN~R~ 294 (431)
T 3mjf_A 267 NIYTGFLYAGLMISADGQPKVIEFNCRF 294 (431)
T ss_dssp CCCEEEEEEEEEECTTSCEEEEEECGGG
T ss_pred CCcEEEEEEEEEEeCCCCeEEEEEecCC
Confidence 33222 3489999987789999999964
No 39
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=72.32 E-value=4.7 Score=42.08 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=48.1
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|..|+.|-...+-. .+...|.+.+|+...+..-..-. ...| ..-.+++-+|
T Consensus 144 ~~~~a~~igyPvVvKp~~gggg-------kGv~iv~~~~el~~a~~~~~~ea---~~~f-----------g~~~vlvEe~ 202 (681)
T 3n6r_A 144 AVKISNQIGYPVMIKASAGGGG-------KGMRIAWNDQEAREGFQSSKNEA---ANSF-----------GDDRIFIEKF 202 (681)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCcEEEEECCCCCC-------CCEEEECCHHHHHHHHHHHHHHH---HHhC-----------CCCcEEEEec
Confidence 4455567777788886655421 12345666666554443211100 0001 0124667777
Q ss_pred CCCCCCCceEEEEEe---CCeEEEEeeCCc------cccchhhhc--cHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEEe
Q 019606 178 YPSLRPEMEFRCFVR---GRCLVGISQREV------TMCYPALSE--KKNDIKVLIQELFDSNVRQEFESEN-YTFDVYV 245 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~---~~~LiaISQr~~------~~~y~~L~~--~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVyi 245 (338)
. ...+|+.+.|. +|+++.+..|++ ......-.. ..++++..|.+.... +...+.... +.+|+.+
T Consensus 203 I---~g~rei~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~-~~~alg~~G~~~vEf~~ 278 (681)
T 3n6r_A 203 V---TQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVA-LAKAVGYASAGTVEFIV 278 (681)
T ss_dssp C---CSCEEEEEEEECCSSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHH-HHHTTTCCSEEEEEEEE
T ss_pred c---CCCcEEEEEEEEeCCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHH-HHHHcCCCceEEEEEEE
Confidence 6 22378887775 357777754433 222221111 234566666666553 344555444 3599999
Q ss_pred cCCCcEEEEEecCCCC
Q 019606 246 TKDERVKILDFNPWGA 261 (338)
Q Consensus 246 ~~~~~v~LID~NPf~~ 261 (338)
+.++++++||+||=..
T Consensus 279 d~dg~~~~lEiNpR~~ 294 (681)
T 3n6r_A 279 DGQKNFYFLEMNTRLQ 294 (681)
T ss_dssp CTTSCCCCCEEECSCC
T ss_pred eCCCCEEEEecccccC
Confidence 9888899999999763
No 40
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=71.31 E-value=13 Score=34.98 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=54.0
Q ss_pred eEEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCccccchh-hh-------ccHHHHHHHHHHHHHHHhhhhc-CCCCce
Q 019606 170 FFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPA-LS-------EKKNDIKVLIQELFDSNVRQEF-ESENYT 240 (338)
Q Consensus 170 ~~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~-L~-------~~~~~i~~~I~~F~~~~i~~~~-~~~~yv 240 (338)
..+++-+|. . +.+-.||||-+++.+|.--|.....|.. +. +..++++ +... .....+ ..+=+-
T Consensus 189 ~~~~vQefI-~--~g~DiRv~VvGg~v~a~~Rr~~~g~wrtN~~~~~~e~~~l~~e~~----~la~-~A~~a~gGldi~G 260 (309)
T 1i7n_A 189 TYATAEPFI-D--AKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYK----LWVD-ACSEMFGGLDICA 260 (309)
T ss_dssp CCEEEEECC-C--EEEEEEEEEETTEEEEEEEESSCTTTSCSCCCSSEEEECCCHHHH----HHHH-HHTTGGGCCSEEE
T ss_pred CeEEEEeec-C--CCceEEEEEECCEEEEEEEEcCCCCCeecCCcceeeecCCCHHHH----HHHH-HHHHHhCCCCEEE
Confidence 356788898 5 7899999999999998765532122211 11 1123322 2222 333457 578889
Q ss_pred EEEEecCCCcEEEEEecC
Q 019606 241 FDVYVTKDERVKILDFNP 258 (338)
Q Consensus 241 ~DVyi~~~~~v~LID~NP 258 (338)
+|+...++++.+++|+|.
T Consensus 261 VDll~~~~g~~~V~EVN~ 278 (309)
T 1i7n_A 261 VKAVHGKDGKDYIFEVMD 278 (309)
T ss_dssp EEEEEETTSCEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECC
Confidence 999988888899999999
No 41
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=69.46 E-value=13 Score=36.93 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=53.5
Q ss_pred eEEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCccccchh-hh-------ccHHHHHHHHHHHHHHHhhhhc-CCCCce
Q 019606 170 FFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPA-LS-------EKKNDIKVLIQELFDSNVRQEF-ESENYT 240 (338)
Q Consensus 170 ~~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~-L~-------~~~~~i~~~I~~F~~~~i~~~~-~~~~yv 240 (338)
.++++-+|. + +.+..||||-+++.+|.--|.....|.. +. +..+++++ ... +....+ ..+=+-
T Consensus 301 ~~~~vQEfI-~--~g~DIRv~VVGg~vva~~Rr~~~g~WrtNvg~g~~e~i~lt~e~~e----lA~-kAaka~gGldiaG 372 (422)
T 1pk8_A 301 TYATAEPFI-D--AKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKL----WVD-TCSEIFGGLDICA 372 (422)
T ss_dssp SCEEEEECC-C--EEEEEEEEEETTEEEEEEEEESSSCSSTTSSCEEEEEECCCHHHHH----HHH-HHTTGGGCCSEEE
T ss_pred ceEEEEeec-C--CCceEEEEEECCEEEEEEEEcCCCCceeccCceeeeeeCCCHHHHH----HHH-HHHHHhCCCCEEE
Confidence 356788898 5 6899999999999998655421111111 11 11233322 222 344456 577789
Q ss_pred EEEEecCCCcEEEEEecC
Q 019606 241 FDVYVTKDERVKILDFNP 258 (338)
Q Consensus 241 ~DVyi~~~~~v~LID~NP 258 (338)
+|+...++++.+++|+|.
T Consensus 373 VDlL~s~dG~~~VlEVN~ 390 (422)
T 1pk8_A 373 VEALHGKDGRDHIIEVVG 390 (422)
T ss_dssp EEEEEETTSCEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECC
Confidence 999988888899999999
No 42
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=67.75 E-value=33 Score=32.70 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=75.9
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...++.- ... ...|. . .-.+++-+
T Consensus 132 e~~~~~~~~g~PvvvKp~~~~gg-------~Gv~~v~~~~el~~a~~~~---~~~-~~~~g--------~--~~~vlvEe 190 (412)
T 1vkz_A 132 ELREKIKKFSPPYVIKADGLARG-------KGVLILDSKEETIEKGSKL---IIG-ELIKG--------V--KGPVVIDE 190 (412)
T ss_dssp HHHHHHTTSCSSEEEEESSCCSS-------CCEEEESSHHHHHHHHHHH---HHT-SSSTT--------C--CSCEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCCC-------CCEEEECCHHHHHHHHHHH---Hhh-ccccC--------C--CCeEEEEE
Confidence 35667788888899998876622 2446788888876554321 000 00011 0 01567788
Q ss_pred cCCCCCCCceEEEEEe-CCe-EEEEe--eCCccccch-----------hhh--ccHHHHHHHHHHHHHHHhhhhc-----
Q 019606 177 WYPSLRPEMEFRCFVR-GRC-LVGIS--QREVTMCYP-----------ALS--EKKNDIKVLIQELFDSNVRQEF----- 234 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~~~-LiaIS--Qr~~~~~y~-----------~L~--~~~~~i~~~I~~F~~~~i~~~~----- 234 (338)
|. . ..||.|.|- ||+ +..+. |... ..++ ... ...+++++.|.+..... ...+
T Consensus 191 ~i-~---G~E~sv~~~~dg~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~P~~l~~~~~~~i~~~a~~~-~~~l~~~g~ 264 (412)
T 1vkz_A 191 FL-A---GNELSAMAVVNGRNFVILPFVRDYK-RLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKT-LWGVEKEGY 264 (412)
T ss_dssp CC-C---SEEEEEEEEEETTEEEECCCCEECC-EEETTTEEEECSCSEEEECCCCCHHHHHHHHHHHHHH-HHHHHHTTC
T ss_pred CC-c---CcEEEEEEEECCCEEEEeeeeEeee-eccCCCCCCCCCCceEEECCCCCHHHHHHHHHHHHHH-HHHHHhcCC
Confidence 87 3 578888775 665 33332 4322 1111 000 12345555555555432 2233
Q ss_pred CC-CCceEEEEecCCCcEEEEEecCCC
Q 019606 235 ES-ENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 235 ~~-~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
+. .-+-+|+.++.++ +++||+||--
T Consensus 265 ~~~G~~~ve~~~~~~g-~~viEiN~R~ 290 (412)
T 1vkz_A 265 AYRGFLYLGLMLHDGD-PYILEYNVRL 290 (412)
T ss_dssp CCEEEEEEEEEEETTE-EEEEEEESSC
T ss_pred CcEEEEEEEEEEECCC-cEEEEEecCC
Confidence 32 2236899998766 9999999954
No 43
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=67.23 E-value=15 Score=34.34 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=48.7
Q ss_pred EEEeccCCCCCCCceEEEEEe---CCeE--EEEeeCC--ccc-cchh-hh--ccHHHHHHHHHHHHHHHhhhhcCC-CCc
Q 019606 172 LALRKWYPSLRPEMEFRCFVR---GRCL--VGISQRE--VTM-CYPA-LS--EKKNDIKVLIQELFDSNVRQEFES-ENY 239 (338)
Q Consensus 172 LvLrkW~~~i~ps~EFRcFV~---~~~L--iaISQr~--~~~-~y~~-L~--~~~~~i~~~I~~F~~~~i~~~~~~-~~y 239 (338)
+++-+|. . ...||++.+- +|++ .++++.. ... .+.. +. ...+++...+.+.... +...+.. .-+
T Consensus 166 ~lvEe~i-~--~g~e~sv~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~-~~~~lg~~G~~ 241 (380)
T 3ax6_A 166 TYLEEFV-E--IEKELAVMVARNEKGEIACYPVVEMYFDEDANICDTVIAPARIEEKYSKIAREIATS-VVEALEGVGIF 241 (380)
T ss_dssp EEEEECC-C--EEEEEEEEEEECSSCCEEEEEEEEEC--------CEEEESCSSCHHHHHHHHHHHHH-HHHHHTCCEEE
T ss_pred EEEEecc-C--CCeeEEEEEEECCCCCEEEECCeeeeecccCCeeEEEECCCCCCHHHHHHHHHHHHH-HHHHCCCeEEE
Confidence 5667776 2 2689999974 3454 4566544 211 1111 11 1234455555555543 3334444 345
Q ss_pred eEEEEecCCCcEEEEEecCCC
Q 019606 240 TFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 240 v~DVyi~~~~~v~LID~NPf~ 260 (338)
-+|+.++++++++++|+||--
T Consensus 242 ~vd~~~~~~g~~~viEiN~R~ 262 (380)
T 3ax6_A 242 GIEMFLTKQGEILVNEIAPRP 262 (380)
T ss_dssp EEEEEEETTSCEEEEEEESSC
T ss_pred EEEEEEeCCCcEEEEEecCCC
Confidence 789999888889999999964
No 44
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=64.26 E-value=24 Score=33.92 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCe-eeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEe
Q 019606 97 KIKESIESLGGA-VFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALR 175 (338)
Q Consensus 97 ~I~~aI~~lgG~-vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLr 175 (338)
.+.++++++|.. |+.|-..++ .+ .+...|++.+|+...++.--.- ..|.. ....+++-
T Consensus 154 ~~~~~~~~~g~P~vvvKp~~~~--gg-----~Gv~~v~~~~el~~~~~~~~~~-----~~~g~---------~~~~~lvE 212 (452)
T 2qk4_A 154 EACSFILSADFPALVVKASGLA--AG-----KGVIVAKSKEEACKAVQEIMQE-----KAFGA---------AGETIVIE 212 (452)
T ss_dssp HHHHHHHHCSSCEEEEEESBC----------CCEEECSSHHHHHHHHHHHTTC---------------------CCEEEE
T ss_pred HHHHHHHhCCCCeEEEEeCCCC--CC-----CCEEEeCCHHHHHHHHHHHHhh-----hhccC---------CCCeEEEE
Confidence 466777888888 999977664 21 2446788888876544321000 00110 01346778
Q ss_pred ccCCCCCCCceEEEEEe-CCe-EEEE-eeCCccccchh-----------hh--c-cHHHHHHHHH-HHHHH---Hhh-hh
Q 019606 176 KWYPSLRPEMEFRCFVR-GRC-LVGI-SQREVTMCYPA-----------LS--E-KKNDIKVLIQ-ELFDS---NVR-QE 233 (338)
Q Consensus 176 kW~~~i~ps~EFRcFV~-~~~-LiaI-SQr~~~~~y~~-----------L~--~-~~~~i~~~I~-~F~~~---~i~-~~ 233 (338)
+|. . ..||+|.+- +|+ ++.+ .+++....++. +. . ..+++.+.+. +.... .+. ..
T Consensus 213 e~i-~---G~E~sv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g 288 (452)
T 2qk4_A 213 ELL-D---GEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEG 288 (452)
T ss_dssp ECC-C---SEEEEEEEEECSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred ECC-C---CCeEEEEEEECCCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 887 3 579999775 675 4332 23322122111 00 0 1233333333 22221 221 12
Q ss_pred cCC-CCceEEEEecCCCcEEEEEecCCC
Q 019606 234 FES-ENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 234 ~~~-~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
++. .-+-+|+.++.++ ++++|+||=-
T Consensus 289 ~~~~G~~~ve~~~~~~g-~~viEiN~R~ 315 (452)
T 2qk4_A 289 TPYTGILYAGIMLTKNG-PKVLEFNCRF 315 (452)
T ss_dssp CCCCEEEEEEEEEETTE-EEEEEEESSC
T ss_pred CCceeEEEEEEEEeCCC-cEEEEEeccC
Confidence 332 2357899998776 9999999954
No 45
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=64.12 E-value=48 Score=30.69 Aligned_cols=131 Identities=9% Similarity=0.064 Sum_probs=72.8
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+ + ...+...|++.+|+...++.- . ...+++-+
T Consensus 122 ~~~~~~~~~g~P~vvKp~~~~-----~-~g~Gv~~v~~~~el~~~~~~~--------------~--------~~~~lvEe 173 (369)
T 3aw8_A 122 DLEEGLKRVGLPALLKTRRGG-----Y-DGKGQALVRTEEEALEALKAL--------------G--------GRGLILEG 173 (369)
T ss_dssp HHHHHHTTTCSSEEEEECCC------------EEEECSHHHHHHHHTTT--------------C--------SSSEEEEE
T ss_pred HHHHHHHHcCCCEEEEEcCCC-----C-CcceEEEECCHHHHHHHHHhc--------------C--------CCcEEEEE
Confidence 456677788888999976654 1 112445688888775554321 0 12356677
Q ss_pred cCCCCCCCceEEEEEe---CCeEEE--EeeCCcc-ccchh-hh--c-cHHHHHHHHHHHHHHHhhhhcCCC-CceEEEEe
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVG--ISQREVT-MCYPA-LS--E-KKNDIKVLIQELFDSNVRQEFESE-NYTFDVYV 245 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~Lia--ISQr~~~-~~y~~-L~--~-~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVyi 245 (338)
|. ....||++.+- +|+++. +++.... .+++. +. . ..+++...+.+... .+...+... -+-+|+.+
T Consensus 174 ~i---~~g~e~sv~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~-~~~~~lg~~G~~~vd~~~ 249 (369)
T 3aw8_A 174 FV---PFDREVSLLAVRGRTGEVAFYPLVENRHWGGILRLSLAPAPGASEALQKKAEAYAL-RAMEALDYVGVLALEFFQ 249 (369)
T ss_dssp CC---CCSEEEEEEEEECTTSCEEECCCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHH-HHHHHHTCCEEEEEEEEE
T ss_pred cC---CCCEEEEEEEEECCCCCEEEECCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHH-HHHHHCCCeeEEEEEEEE
Confidence 76 23789998875 355543 3332211 11211 00 1 22344455555444 233344443 34789999
Q ss_pred cCCCcEEEEEecCCC
Q 019606 246 TKDERVKILDFNPWG 260 (338)
Q Consensus 246 ~~~~~v~LID~NPf~ 260 (338)
+. ++++++|+||--
T Consensus 250 ~~-~~~~viEiN~R~ 263 (369)
T 3aw8_A 250 VG-EELLFNEMAPRV 263 (369)
T ss_dssp ET-TEEEEEEEESSC
T ss_pred EC-CcEEEEEEeCCc
Confidence 87 889999999964
No 46
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=63.44 E-value=34 Score=32.43 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...++.-.. ...|.. ....+++-+
T Consensus 128 ~~~~~~~~~~~PvvvKp~~g~gg-------~Gv~~v~~~~el~~~~~~~~~-----~~~~g~---------~~~~~lvEe 186 (424)
T 2yw2_A 128 KAKEYVEKVGAPIVVKADGLAAG-------KGAVVCETVEKAIETLDRFLN-----KKIFGK---------SSERVVIEE 186 (424)
T ss_dssp HHHHHHHHHCSSEEEEESSCCTT-------CSEEEESSHHHHHHHHHHHHT-----SCTTGG---------GGSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEeCCCCCC-------CCEEEECCHHHHHHHHHHHHh-----hhhccC---------CCCeEEEEE
Confidence 35667788888899998776522 244678888886554432100 000110 012467788
Q ss_pred cCCCCCCCceEEEEEe-CCe-EEEE-eeCCccccchh-----------hh-c--cHHHHHHHHH-HHHHH---Hhhh-hc
Q 019606 177 WYPSLRPEMEFRCFVR-GRC-LVGI-SQREVTMCYPA-----------LS-E--KKNDIKVLIQ-ELFDS---NVRQ-EF 234 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~~~-LiaI-SQr~~~~~y~~-----------L~-~--~~~~i~~~I~-~F~~~---~i~~-~~ 234 (338)
|. . ..||.+.+- +|+ +..+ .+|+....+++ .. . ..+++++.+. +.... .++. .+
T Consensus 187 ~i-~---g~E~sv~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 262 (424)
T 2yw2_A 187 FL-E---GEEASYIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGI 262 (424)
T ss_dssp CC-C---SEEEEEEEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTC
T ss_pred CC-C---CcEEEEEEEEcCCEEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 87 3 568888764 553 4432 23322222221 00 0 1233444442 22221 1211 13
Q ss_pred CC-CCceEEEEecCCCcEEEEEecCCC
Q 019606 235 ES-ENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 235 ~~-~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
.. .-+.+|+.++.++ +++||+||--
T Consensus 263 ~~~G~~~ve~~~~~~g-~~viEiN~R~ 288 (424)
T 2yw2_A 263 YYRGFLYAGLMITKEG-PKVLEFNVRL 288 (424)
T ss_dssp CCEEEEEEEEEEETTE-EEEEEEESSC
T ss_pred CceeEEEEEEEEeCCC-cEEEEEecCC
Confidence 32 2245999998766 9999999953
No 47
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=62.23 E-value=17 Score=32.96 Aligned_cols=126 Identities=15% Similarity=0.151 Sum_probs=57.6
Q ss_pred HHHHHHHH--HHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEE
Q 019606 95 ELKIKESI--ESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFL 172 (338)
Q Consensus 95 ~~~I~~aI--~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~L 172 (338)
...+.+++ +++|..|+.|-...+-. .+...|++.+|+...++. ...+
T Consensus 136 ~~~~~~~~~~~~~~~P~vvKp~~g~g~-------~gv~~v~~~~el~~~~~~------------------------~~~~ 184 (331)
T 2pn1_A 136 MASFEEALAAGEVQLPVFVKPRNGSAS-------IEVRRVETVEEVEQLFSK------------------------NTDL 184 (331)
T ss_dssp HHHHHHHHHTTSSCSCEEEEESBC------------------------------------------------------CE
T ss_pred HHHhhhhhhcccCCCCEEEEeCCCCCC-------CCeEEeCCHHHHHHHHHh------------------------CCCe
Confidence 34455555 36777888887665421 234556666655443321 0135
Q ss_pred EEeccCCCCCCCceEEEEEe----CCeEEEEeeCCcccc----ch-hhhccHHHHHHHHHHHHHHHhhhhcCCC-CceEE
Q 019606 173 ALRKWYPSLRPEMEFRCFVR----GRCLVGISQREVTMC----YP-ALSEKKNDIKVLIQELFDSNVRQEFESE-NYTFD 242 (338)
Q Consensus 173 vLrkW~~~i~ps~EFRcFV~----~~~LiaISQr~~~~~----y~-~L~~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~D 242 (338)
++-+|. . ..|+.+.+. +|+++++..+....+ .. ......+++.+...++ ...+... -+-+|
T Consensus 185 lvee~i-~---G~e~~v~~~~d~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~lg~~G~~~vd 255 (331)
T 2pn1_A 185 IVQELL-V---GQELGVDAYVDLISGKVTSIFIKEKLTMRAGETDKSRSVLRDDVFELVEHV-----LDGSGLVGPLDFD 255 (331)
T ss_dssp EEEECC-C---SEEEEEEEEECTTTCCEEEEEEEEEEEEETTEEEEEEEECCHHHHHHHHHH-----HTTTCCCEEEEEE
T ss_pred EEEecC-C---CcEEEEEEEEecCCCeEEEEEEEEEEEecCCceeEeEEeccHHHHHHHHHH-----HHHhCCcceEEEE
Confidence 777787 3 377776543 477775543321000 00 0111223444433333 3345443 34688
Q ss_pred EEecCCCcEEEEEecC-CCC
Q 019606 243 VYVTKDERVKILDFNP-WGA 261 (338)
Q Consensus 243 Vyi~~~~~v~LID~NP-f~~ 261 (338)
+.+ .+++++++|+|| +++
T Consensus 256 ~~~-~~g~~~~iEiN~R~~g 274 (331)
T 2pn1_A 256 LFD-VAGTLYLSEINPRFGG 274 (331)
T ss_dssp EEE-ETTEEEEEEEESSCCT
T ss_pred EEE-cCCCEEEEEEeCCCCC
Confidence 875 568999999999 453
No 48
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=61.45 E-value=48 Score=32.14 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=74.8
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|.+.+|+...++.-.. ...|.. ....+++-+
T Consensus 149 ea~~~~~~~g~PvVvKp~~~~gg-------~GV~iv~~~eel~~a~~~~~~-----~~~~g~---------~~~~vlvEe 207 (442)
T 3lp8_A 149 SAYKFIDKHKLPLVVKADGLAQG-------KGTVICHTHEEAYNAVDAMLV-----HHKFGE---------AGCAIIIEE 207 (442)
T ss_dssp HHHHHHHHSCSSEEEEESSCCTT-------TSEEEESSHHHHHHHHHHHHT-----SCTTGG---------GGSSEEEEE
T ss_pred HHHHHHHHcCCcEEEeECCCCCC-------CeEEEeCCHHHHHHHHHHHHh-----hcccCC---------CCCeEEEEE
Confidence 46677888998999997765522 244678888887655432100 001110 012467777
Q ss_pred cCCCCCCCceEEEEEe-CC-eE--EEEeeCCccccchhh-----------h---ccHHHHHHHHHHH----HHHHhh-hh
Q 019606 177 WYPSLRPEMEFRCFVR-GR-CL--VGISQREVTMCYPAL-----------S---EKKNDIKVLIQEL----FDSNVR-QE 233 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~~-~L--iaISQr~~~~~y~~L-----------~---~~~~~i~~~I~~F----~~~~i~-~~ 233 (338)
|. . ..||.+++- |+ .+ ++++|++. ..|+.- . ...+++.+.+.+. ..+.++ ..
T Consensus 208 ~i-~---G~E~sv~~~~dg~~~~~~~~~~~~~-~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g 282 (442)
T 3lp8_A 208 FL-E---GKEISFFTLVDGSNPVILGVAQDYK-TIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMN 282 (442)
T ss_dssp CC-C---SEEEEEEEEEESSCEEEEEEEEECC-EEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred ee-c---CcEEEEEEEECCCeEEEeEEeEeee-ecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77 3 678887765 43 34 45566553 333210 0 0123444444443 222111 12
Q ss_pred cCC-CCceEEEEecCCCcEEEEEecCCC
Q 019606 234 FES-ENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 234 ~~~-~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
++. .-+-+|+.++.++ +++||+||--
T Consensus 283 ~~~~G~~~ve~~~~~~g-~~viEiN~R~ 309 (442)
T 3lp8_A 283 IQFRGLLFAGIIIKKNE-PKLLEYNVRF 309 (442)
T ss_dssp CCCEEEEEEEEEEETTE-EEEEEEESSC
T ss_pred CCceeEEEEEEEEeCCC-eEEEEEecCC
Confidence 321 2235899998765 9999999964
No 49
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=60.48 E-value=31 Score=33.19 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=71.0
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+-. .+...|++.+|+...++.- ... ..|.. ....+++-+
T Consensus 149 ~~~~~~~~~~~PvVvKp~~~~gg-------~Gv~~v~~~~el~~~~~~~---~~~--~~~g~---------~~~~~lvEe 207 (451)
T 2yrx_A 149 EAKAYIEQKGAPIVIKADGLAAG-------KGVTVAQTVEEALAAAKAA---LVD--GQFGT---------AGSQVVIEE 207 (451)
T ss_dssp HHHHHHHHHCSSEEEEECC-----------CCEEEESSHHHHHHHHHHH---HHH--SCCBT---------TBCCEEEEE
T ss_pred HHHHHHHhcCCcEEEEeCCCCCC-------CcEEEECCHHHHHHHHHHH---Hhc--cccCC---------CCCeEEEEE
Confidence 35667788888899997776522 2456788888876555321 000 00110 113467788
Q ss_pred cCCCCCCCceEEEEEe-CCeEE-E--EeeCCccccchh-----------hh--c-cHHHHHHHH-HHHHHH---Hhhh-h
Q 019606 177 WYPSLRPEMEFRCFVR-GRCLV-G--ISQREVTMCYPA-----------LS--E-KKNDIKVLI-QELFDS---NVRQ-E 233 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~~~Li-a--ISQr~~~~~y~~-----------L~--~-~~~~i~~~I-~~F~~~---~i~~-~ 233 (338)
|. . ..||.|.+- +|+.+ . ++|++. ..+++ +. . ..+++.+.+ .+.... .+.. .
T Consensus 208 ~i-~---G~E~sv~~~~dG~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g 282 (451)
T 2yrx_A 208 YL-E---GEEFSFMAFVNGEKVYPLAIAQDHK-RAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEG 282 (451)
T ss_dssp CC-C---SEEEEEEEEEETTEEEECCCBEECC-EEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred CC-c---CcEEEEEEEEcCCEEEEeeeEEecc-ccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 87 3 679998764 66533 2 234322 21111 00 0 123333333 222221 1111 1
Q ss_pred cCC-CCceEEEEecCCCcEEEEEecCCC
Q 019606 234 FES-ENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 234 ~~~-~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
+.. .-+-+|+.++.++ +++||+||=-
T Consensus 283 ~~~~G~~~ve~~~~~~g-~~viEiN~R~ 309 (451)
T 2yrx_A 283 RPFLGVLYAGLMATANG-PKVIEFNARF 309 (451)
T ss_dssp CCCEEEEEEEEEEETTE-EEEEEEESSC
T ss_pred CCceeEEEEEEEEeCCC-cEEEEEecCC
Confidence 232 2346899998766 9999999954
No 50
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=59.28 E-value=36 Score=32.22 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+- ..+...|++.+|+...++.-.. ...|.. ....+++-+
T Consensus 128 ~~~~~~~~~~~P~vvKp~~~~~-------g~Gv~~v~~~~el~~~~~~~~~-----~~~~g~---------~~~~~lvEe 186 (422)
T 2xcl_A 128 EAKAYVQEKGAPIVIKADGLAA-------GKGVTVAMTEEEAIACLHDFLE-----DEKFGD---------ASASVVIEE 186 (422)
T ss_dssp HHHHHHHHHCSSEEEEESSCGG-------GTCEEEESSHHHHHHHHHHHHT-----SCTTGG---------GGSSEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCC-------CCcEEEECCHHHHHHHHHHHHh-----hhhccC---------CCCeEEEEE
Confidence 3566778888889999777642 1345678888887654432100 000110 012467788
Q ss_pred cCCCCCCCceEEEEEe-CCe-EEE--EeeCCccccchh-----------hh--c-cHHHHHHHHHH-HHHH---Hhhh-h
Q 019606 177 WYPSLRPEMEFRCFVR-GRC-LVG--ISQREVTMCYPA-----------LS--E-KKNDIKVLIQE-LFDS---NVRQ-E 233 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~-~~~-Lia--ISQr~~~~~y~~-----------L~--~-~~~~i~~~I~~-F~~~---~i~~-~ 233 (338)
|. . ..||++.+- +|+ +.. ++|++ ...++. +. . ..+++.+.+.+ .... .+.. .
T Consensus 187 ~i-~---g~E~sv~~~~dG~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g 261 (422)
T 2xcl_A 187 YL-S---GEEFSLMAFVKGEKVYPMVIAQDH-KRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEG 261 (422)
T ss_dssp CC-C---SEEEEEEEEEETTEEEECCCBEEE-EEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred CC-c---CcEEEEEEEEcCCEEEecceeeee-ehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 87 3 679998775 554 333 23322 122211 00 0 12333333322 2221 1111 1
Q ss_pred cCC-CCceEEEEecCCCcEEEEEecCCC
Q 019606 234 FES-ENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 234 ~~~-~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
+.. .-+-+|+.++.++ ++++|+||--
T Consensus 262 ~~~~G~~~vd~~~~~~g-~~viEiN~R~ 288 (422)
T 2xcl_A 262 RSFTGVLYAGLMLTENG-SKVIEFNARF 288 (422)
T ss_dssp CCCEEEEEEEEEEETTE-EEEEEEESSC
T ss_pred CCcEEEEEeeEEEeCCC-cEEEEEecCC
Confidence 232 2246899998766 9999999953
No 51
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=57.12 E-value=62 Score=35.32 Aligned_cols=134 Identities=14% Similarity=0.083 Sum_probs=75.6
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++.+++|..|+.|-...+-. .+...|.+.+|+...++.. +... ....+++-+
T Consensus 154 ea~~~~~~ig~PvVvKp~~~~Gg-------~Gv~iv~~~eel~~~~~~~----------~~~~--------~~~~vlvEe 208 (1073)
T 1a9x_A 154 EALAVAADVGFPCIIRPSFTMGG-------SGGGIAYNREEFEEICARG----------LDLS--------PTKELLIDE 208 (1073)
T ss_dssp HHHHHHHHHCSSEEEEETTCCTT-------TTCEEESSHHHHHHHHHHH----------HHHC--------TTSCEEEEE
T ss_pred HHHHHHHHcCCCEEEEECCCCCC-------CceEEeCCHHHHHHHHHHH----------HhhC--------CCCcEEEEE
Confidence 35566788998899997765432 2445688888876655421 1110 012456677
Q ss_pred cCCCCCCCceEEEEEe---CCeEEEEe--eCCcccc---------chhhhccHHHHHHHHHHHHHHHhhhhcCCC--Cce
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVGIS--QREVTMC---------YPALSEKKNDIKVLIQELFDSNVRQEFESE--NYT 240 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~LiaIS--Qr~~~~~---------y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~--~yv 240 (338)
|. .-..||.+-|. +++++.++ |+..... .|.. ...++....+.+.... +...+... -+.
T Consensus 209 ~I---~G~~E~~v~v~~d~~g~~v~~~~~e~~dp~~v~~g~s~~~~Pa~-~l~~~~~~~l~~~a~~-i~~~lg~~~G~~~ 283 (1073)
T 1a9x_A 209 SL---IGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQ-TLTDKEYQIMRNASMA-VLREIGVETGGSN 283 (1073)
T ss_dssp CC---TTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEEESCC-SCCHHHHHHHHHHHHH-HHHHHTCCSEEEE
T ss_pred cc---CCCeEEEEEEEEeCCCCEEEEEEEecccCCccccCcEEEEecCC-CCCHHHHHHHHHHHHH-HHHHcCcccCceE
Confidence 76 34468887764 35565544 4421000 1110 1223344444444442 22334443 557
Q ss_pred EEEEecC-CCcEEEEEecCCC
Q 019606 241 FDVYVTK-DERVKILDFNPWG 260 (338)
Q Consensus 241 ~DVyi~~-~~~v~LID~NPf~ 260 (338)
+|+.+++ ++++++||+||=-
T Consensus 284 vdf~~~~~~g~~~viEiNpR~ 304 (1073)
T 1a9x_A 284 VQFAVNPKNGRLIVIEMNPRV 304 (1073)
T ss_dssp EEEEECTTTCCEEEEEEESSC
T ss_pred EEEEEECCCCCEEEEEecCCC
Confidence 9999987 5899999999943
No 52
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=53.48 E-value=9.1 Score=35.64 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCeeeeecccCC-CCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEE
Q 019606 96 LKIKESIESLGGAVFPKLNWSA-PKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLAL 174 (338)
Q Consensus 96 ~~I~~aI~~lgG~vfpKLNwss-PkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvL 174 (338)
+.+.++++++|..|+.|-...+ -. .+...|++.+|+...++ .... ...+++
T Consensus 116 ~~~~~~~~~~~~P~vvKp~~~~~~g-------~Gv~~v~~~~el~~~~~--------------~~~~-------~~~~lv 167 (365)
T 2z04_A 116 DEIIDALKSFKLPVVIKAEKLGYDG-------KGQYRIKKLEDANQVVK--------------NHDK-------EESFII 167 (365)
T ss_dssp ------------CEEEECC----------------------------------------------------------CEE
T ss_pred HHHHHHHHhcCCCEEEEEcCCCcCC-------CCeEEECCHHHHHHHHH--------------Hhcc-------CCCEEE
Confidence 4566677788878999976654 11 13345666665533221 1100 123567
Q ss_pred eccCCCCCCCceEEEEEe---CCeE--EEEeeCCccc-cchh-hhcc--HHHHHHHHHHHHHHHhhhhcCCC-CceEEEE
Q 019606 175 RKWYPSLRPEMEFRCFVR---GRCL--VGISQREVTM-CYPA-LSEK--KNDIKVLIQELFDSNVRQEFESE-NYTFDVY 244 (338)
Q Consensus 175 rkW~~~i~ps~EFRcFV~---~~~L--iaISQr~~~~-~y~~-L~~~--~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVy 244 (338)
-+|. . ...|+++.+- +|++ .+++++.... .+.. +... .+++++....... .+... -+-+|+.
T Consensus 168 Ee~i-~--~g~e~sv~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----~lg~~G~~~vd~~ 239 (365)
T 2z04_A 168 EEFV-K--FEAEISCIGVRDREGKTYFYPQPFNKHEEGILIYNYVPYAKLKEAEEITKRLME-----LLDIVGVFTVEFF 239 (365)
T ss_dssp EECC-C--CSEEEEEEEEECTTCCEEECCEEEEEEETTEEEEEEEEEECCHHHHHHHHHHHH-----HTTCCEEEEEEEE
T ss_pred EccC-C--CCEEEEEEEEECCCCCEEEECCEEEEEeCCEeEEEECCHhHHHHHHHHHHHHHH-----HcCCEEEEEEEEE
Confidence 7776 2 2789999875 3554 4455553322 2211 1111 3445554444443 34433 3578999
Q ss_pred ecCCCcEEEEEecCCC
Q 019606 245 VTKDERVKILDFNPWG 260 (338)
Q Consensus 245 i~~~~~v~LID~NPf~ 260 (338)
++++++++++|+||--
T Consensus 240 ~~~~g~~~~iEiN~R~ 255 (365)
T 2z04_A 240 LLKDGRVLINEFAPRV 255 (365)
T ss_dssp ECTTSCEEEEEEESSC
T ss_pred EeCCCcEEEEEeccCc
Confidence 9887889999999964
No 53
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=52.51 E-value=1e+02 Score=33.62 Aligned_cols=136 Identities=12% Similarity=0.121 Sum_probs=69.8
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|..|+.|-...+-.- +...|.+.+|+...++.--. . .....+++-+|
T Consensus 701 a~~~~~~ig~PvvVKP~~~~gG~-------Gv~iv~~~~el~~~~~~a~~--------------~----~~~~~vlvEef 755 (1073)
T 1a9x_A 701 AVEKAKEIGYPLVVRASYVLGGR-------AMEIVYDEADLRRYFQTAVS--------------V----SNDAPVLLDHF 755 (1073)
T ss_dssp HHHHHHHHCSSEEEEC--------------CEEEECSHHHHHHHHHHCC--------------------------EEEBC
T ss_pred HHHHHHHcCCCEEEEECCCCCCC-------CeEEECCHHHHHHHHHHHHh--------------h----CCCCcEEEEEc
Confidence 55566778877888866554222 33557777776655432110 0 01234677777
Q ss_pred CCCCCCCceEEEEEe-CC---eEEEEeeCCccc--cc-hh---h--hccHHHHHHHHHHHHHHHhhhhcCCC-CceEEEE
Q 019606 178 YPSLRPEMEFRCFVR-GR---CLVGISQREVTM--CY-PA---L--SEKKNDIKVLIQELFDSNVRQEFESE-NYTFDVY 244 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~-~~---~LiaISQr~~~~--~y-~~---L--~~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVy 244 (338)
. . -..|+.+-+- ++ .+.+|+++-... +. +. + ....+++...|.+... .+...+... -+-+|+.
T Consensus 756 I-~--g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~-~i~~aLg~~G~~~vdf~ 831 (1073)
T 1a9x_A 756 L-D--DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQ-KLAFELQVRGLMNVQFA 831 (1073)
T ss_dssp C-T--TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHH-HHHHHTTCCEEEEEEEE
T ss_pred c-C--CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCCceEEecCCCCCHHHHHHHHHHHH-HHHHHcCCcceEEEEEE
Confidence 6 2 2346666553 33 356777642211 10 00 1 1223455566666544 344455543 3468988
Q ss_pred ecCCCcEEEEEecCCCCCc
Q 019606 245 VTKDERVKILDFNPWGAFT 263 (338)
Q Consensus 245 i~~~~~v~LID~NPf~~~T 263 (338)
+. ++++++||+||-...|
T Consensus 832 v~-~~~~~viEvNpR~~~~ 849 (1073)
T 1a9x_A 832 VK-NNEVYLIEVNPRAART 849 (1073)
T ss_dssp EC-SSCEEEEEEECSCCTT
T ss_pred EE-CCeEEEEEEECCCccH
Confidence 86 6799999999966544
No 54
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=52.15 E-value=26 Score=38.82 Aligned_cols=139 Identities=10% Similarity=0.078 Sum_probs=47.5
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|..|+.|-...+-. -+...|++.+|+...+..-..-. ..+|. ...+++-+|
T Consensus 163 a~~~a~~igyPvVVKp~~g~GG-------~Gv~iv~s~eEL~~a~~~~~~~a---~~~fg-----------~~~vlVEef 221 (1165)
T 2qf7_A 163 VAKMAAAIGYPVMLKASWGGGG-------RGMRVIRSEADLAKEVTEAKREA---MAAFG-----------KDEVYLEKL 221 (1165)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred HHHHHHhcCCCEEEEeCCCCCC-------CCEEEECCHHHHHHHHHHHHHHH---HhhcC-----------CCcEEEEEe
Confidence 3444566676777776654421 12345666666554433211100 00110 124667777
Q ss_pred CCCCCCCceEEEEEe---CCeEEEEeeCCcc------ccchhhh--ccHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEEe
Q 019606 178 YPSLRPEMEFRCFVR---GRCLVGISQREVT------MCYPALS--EKKNDIKVLIQELFDSNVRQEFESEN-YTFDVYV 245 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~---~~~LiaISQr~~~------~~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~~~-yv~DVyi 245 (338)
. ....|+.|.|- ++.++++..|+++ ....... ...++++..|.+... .+...+...+ +.+|+.+
T Consensus 222 I---~gg~EisV~vl~D~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~-~i~~alg~~G~~~vEf~v 297 (1165)
T 2qf7_A 222 V---ERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSL-KIAGATNYIGAGTVEYLM 297 (1165)
T ss_dssp C---SSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHH-HHHHHTTCCEEEEEEEEE
T ss_pred c---cCCcEEEEEEEEcCCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHH-HHHHHcCCCcceeEEEEE
Confidence 6 33568888764 3567776444331 1111100 123445555655444 3334555544 4699999
Q ss_pred c-CCCcEEEEEecCCCC
Q 019606 246 T-KDERVKILDFNPWGA 261 (338)
Q Consensus 246 ~-~~~~v~LID~NPf~~ 261 (338)
+ .++++++||+||--.
T Consensus 298 d~~dg~~~~iEiNpR~~ 314 (1165)
T 2qf7_A 298 DADTGKFYFIEVNPRIQ 314 (1165)
T ss_dssp ETTTTEEEEEEEECSCC
T ss_pred ECCCCCEEEEEEEcCCC
Confidence 8 778999999999644
No 55
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=51.10 E-value=37 Score=31.15 Aligned_cols=84 Identities=6% Similarity=0.055 Sum_probs=50.4
Q ss_pred EEEeccCCCCCCCceEEEEEeC-CeEEEEe--eCCccccchh---hh--ccHHHHHHHHHHHHHHHhhhhc-CCCC-ceE
Q 019606 172 LALRKWYPSLRPEMEFRCFVRG-RCLVGIS--QREVTMCYPA---LS--EKKNDIKVLIQELFDSNVRQEF-ESEN-YTF 241 (338)
Q Consensus 172 LvLrkW~~~i~ps~EFRcFV~~-~~LiaIS--Qr~~~~~y~~---L~--~~~~~i~~~I~~F~~~~i~~~~-~~~~-yv~ 241 (338)
+++-+|. . ..|++|.|-. +....++ .+.. .++.+ .. .....+...+.+... ++...+ .... +-+
T Consensus 159 ~lvEe~I-~---G~e~sv~v~~g~~~~~~~~~~~~~-~~~~~~g~~~p~~l~~~~~~~i~~~a~-~~~~~l~g~~G~~~v 232 (305)
T 3df7_A 159 HIAQEFI-E---GINLSVSLAVGEDVKCLSVNEQII-NNFRYAGAVVPARISDEVKREVVEEAV-RAVECVEGLNGYVGV 232 (305)
T ss_dssp EEEEECC-C---SEEEEEEEEESSSEEEEEEEEEEE-ETTEEEEEEESCCCCHHHHHHHHHHHH-HHHTTSTTCCEEEEE
T ss_pred EEEEecc-C---CcEEEEEEEeCCeEEEEEEeeEec-cCceeccccccCCCCHHHHHHHHHHHH-HHHHHcCCCcCceEE
Confidence 5677777 3 7899999874 4443333 2222 22222 11 113456666666665 444566 4344 468
Q ss_pred EEEecCCCcEEEEEecCCCCCc
Q 019606 242 DVYVTKDERVKILDFNPWGAFT 263 (338)
Q Consensus 242 DVyi~~~~~v~LID~NPf~~~T 263 (338)
|+.++ ++++++|+||-.+.+
T Consensus 233 D~~~~--~~~~viEiNpR~~~~ 252 (305)
T 3df7_A 233 DIVYS--DQPYVIEINARLTTP 252 (305)
T ss_dssp EEEES--SSEEEEEEESSCCGG
T ss_pred EEEEC--CCEEEEEEcCCCCCC
Confidence 99885 689999999976544
No 56
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=51.07 E-value=13 Score=33.68 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=20.2
Q ss_pred CCCceEEEEecCCCcEEEEEecCCC
Q 019606 236 SENYTFDVYVTKDERVKILDFNPWG 260 (338)
Q Consensus 236 ~~~yv~DVyi~~~~~v~LID~NPf~ 260 (338)
..-+-+|+.++++++++++|+||=-
T Consensus 264 ~G~~~vd~~~~~~g~~~viEiN~R~ 288 (334)
T 2r85_A 264 WGPFCLEGVFTPDLEFVVFEISARI 288 (334)
T ss_dssp CEEEEEEEEECTTSCEEEEEEECSC
T ss_pred cccEEEEEEECCCCCEEEEEEeCCc
Confidence 3345799999887899999999943
No 57
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=42.49 E-value=59 Score=34.26 Aligned_cols=76 Identities=8% Similarity=0.042 Sum_probs=50.6
Q ss_pred HHHHH-HHhCCeeeeecccCCCCcccccccCCccccc---CHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEE
Q 019606 98 IKESI-ESLGGAVFPKLNWSAPKDAAWISTSGTLRCT---SFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLA 173 (338)
Q Consensus 98 I~~aI-~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~---s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~Lv 173 (338)
+.+++ +.+|..|+.|-...+-.-+ -..|. +.+++...++.- +.. .-.++
T Consensus 511 a~~~~~~~~g~PvVVKP~~G~~G~G-------V~iv~~~~s~eel~~a~~~~----------~~~----------~~~vl 563 (750)
T 3ln6_A 511 ALNYFSQIQDKPIVVKPKSTNFGLG-------ISIFKTSANLASYEKAIDIA----------FTE----------DSAIL 563 (750)
T ss_dssp HHHHHHHSSSSCEEEEETTCCSSSS-------CEEESSCCCHHHHHHHHHHH----------HHH----------CSEEE
T ss_pred HHHHHHHhcCCcEEEEeCCCCCCCC-------EEEEeCCCCHHHHHHHHHHH----------Hhh----------CCcEE
Confidence 44556 6678899999765443332 23444 777776554321 111 12467
Q ss_pred EeccCCCCCCCceEEEEEeCCeEEEEeeCCc
Q 019606 174 LRKWYPSLRPEMEFRCFVRGRCLVGISQREV 204 (338)
Q Consensus 174 LrkW~~~i~ps~EFRcFV~~~~LiaISQr~~ 204 (338)
+-+|. . ..|+||+|-+++++|+.+|-.
T Consensus 564 VEefI-~---G~E~~v~Vvgg~vvaa~~r~p 590 (750)
T 3ln6_A 564 VEEYI-E---GTEYRFFVLEGDCIAVLLRVA 590 (750)
T ss_dssp EEECC-C---SEEEEEEEETTEEEEEEEEEC
T ss_pred EEecc-C---CCEEEEEEECCEEEEEEEEec
Confidence 77787 3 789999999999999999965
No 58
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=40.57 E-value=64 Score=35.76 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=50.5
Q ss_pred EEEEeccCCCCCCCceEEEEEe---CCeEEEEe------eCCccccchhhhc--cHHHHHHHHHHHHHHHhhhhcCCCC-
Q 019606 171 FLALRKWYPSLRPEMEFRCFVR---GRCLVGIS------QREVTMCYPALSE--KKNDIKVLIQELFDSNVRQEFESEN- 238 (338)
Q Consensus 171 ~LvLrkW~~~i~ps~EFRcFV~---~~~LiaIS------Qr~~~~~y~~L~~--~~~~i~~~I~~F~~~~i~~~~~~~~- 238 (338)
.+++-+|. .-.+|+.|-|- ++.++.+. ||........... ..++++..|.+... .+...+...+
T Consensus 199 ~vlVEeyI---~G~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~-~~~~alG~~G~ 274 (1150)
T 3hbl_A 199 EVYIERYI---DNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAI-QLMENIKYVNA 274 (1150)
T ss_dssp CBEEECCC---SSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHH-HHHHHTTCCEE
T ss_pred cEEEEEcc---CCCcEEEEEEEEeCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHH-HHHHHcCCCce
Confidence 46778786 23367776664 46777664 4443222222111 23445555555554 3334455444
Q ss_pred ceEEEEecCCCcEEEEEecCCCC
Q 019606 239 YTFDVYVTKDERVKILDFNPWGA 261 (338)
Q Consensus 239 yv~DVyi~~~~~v~LID~NPf~~ 261 (338)
+.+|+.++.+ ++++||+||=..
T Consensus 275 ~~vEflvd~d-~~y~iEINpR~~ 296 (1150)
T 3hbl_A 275 GTVEFLVSGD-EFFFIEVNPRVQ 296 (1150)
T ss_dssp EEEEEEEETT-EEEEEEEECSCC
T ss_pred EEEEEEEECC-eEEEEEEeCCCC
Confidence 4689998876 999999999654
No 59
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=38.66 E-value=40 Score=37.73 Aligned_cols=138 Identities=9% Similarity=0.062 Sum_probs=45.3
Q ss_pred HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606 98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW 177 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW 177 (338)
+.++++++|-.|+.|-...+-. .+-..|++.+|+...++.-..... ..| ..-.+++-+|
T Consensus 172 a~~~a~~iGyPvVVKP~~GgGG-------kGV~iv~s~eEL~~a~~~~~~~a~---~~~-----------~~~~vlVEey 230 (1236)
T 3va7_A 172 AKEVAKKLEYPVMVKSTAGGGG-------IGLQKVDSEDDIERVFETVQHQGK---SYF-----------GDAGVFMERF 230 (1236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCCEEEEeCCCCCC-------CCEEEECCHHHHHHHHHHHHHHHH---hcc-----------CCCcEEEeec
Confidence 3445566776677776544311 122456776665444332111000 000 1123667777
Q ss_pred CCCCCCCceEEEEEe---CCeEEEEeeCCccc------cchhhh--ccHHHHHHHHHHHHHHHhhhhcCCC-CceEEEEe
Q 019606 178 YPSLRPEMEFRCFVR---GRCLVGISQREVTM------CYPALS--EKKNDIKVLIQELFDSNVRQEFESE-NYTFDVYV 245 (338)
Q Consensus 178 ~~~i~ps~EFRcFV~---~~~LiaISQr~~~~------~y~~L~--~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVyi 245 (338)
. .-..|+.|.|- ++.++.+.-|+++. ...... ...++++..|.+... .+...+... -+.+|+.+
T Consensus 231 I---~G~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~-~~~~alg~~G~~~VEfiv 306 (1236)
T 3va7_A 231 V---NNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASE-RLGSLLKYKCAGTVEFIY 306 (1236)
T ss_dssp -----CCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHH-HHHHHTTCEEEEEEEEEE
T ss_pred c---CCCeEEEEEEEecCCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHH-HHHHHcCCcceEEEEEEE
Confidence 6 22467777764 35778776555421 111111 123455556666555 333445443 34789999
Q ss_pred cCC-CcEEEEEecCCC
Q 019606 246 TKD-ERVKILDFNPWG 260 (338)
Q Consensus 246 ~~~-~~v~LID~NPf~ 260 (338)
+.+ +++++||+||=-
T Consensus 307 d~d~g~~y~iEINpRl 322 (1236)
T 3va7_A 307 DEQRDEFYFLEVNARL 322 (1236)
T ss_dssp ETTTTEEEEEEEECSC
T ss_pred ECCCCcEEEEEEECCC
Confidence 875 899999999954
No 60
>1z5s_D RAN-binding protein 2; ligase, SUMO, UBC9, nuclear pore complex; 3.01A {Homo sapiens}
Probab=35.04 E-value=12 Score=28.72 Aligned_cols=14 Identities=14% Similarity=0.544 Sum_probs=9.7
Q ss_pred HHHHHHHhCCeeee
Q 019606 98 IKESIESLGGAVFP 111 (338)
Q Consensus 98 I~~aI~~lgG~vfp 111 (338)
...|+++++|..+|
T Consensus 49 Fetavkklngkly~ 62 (83)
T 1z5s_D 49 FETAVKKLNGKLYL 62 (83)
T ss_dssp HHHHHHHTCSCSCC
T ss_pred HHHHHHHhCCeecc
Confidence 45667788887665
No 61
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=32.03 E-value=54 Score=31.55 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=71.9
Q ss_pred HHHHHHH----hCCeeeeecc-cCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEE
Q 019606 98 IKESIES----LGGAVFPKLN-WSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFL 172 (338)
Q Consensus 98 I~~aI~~----lgG~vfpKLN-wssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~L 172 (338)
+.+++++ + ..|+.|-. ..+-. .+...|++.+|+...+.. .. ...+
T Consensus 160 ~~~~~~~~~~~~-~P~VvKp~~~g~~G-------~Gv~~v~~~~el~~a~~~--------------~~--------~~~~ 209 (419)
T 4e4t_A 160 LAALDDAALDAV-LPGILKTARLGYDG-------KGQVRVSTAREARDAHAA--------------LG--------GVPC 209 (419)
T ss_dssp HHTSCHHHHHTT-CSEEEEESSSCCTT-------TTEEEECSHHHHHHHHHH--------------TT--------TCCE
T ss_pred HHHHHHhhcccc-CCEEEEecCCCCCC-------CceEEECCHHHHHHHHHh--------------cC--------CCcE
Confidence 4444555 6 56888865 32221 134567888876655431 11 1236
Q ss_pred EEeccCCCCCCCceEEEEEe-C--CeEE--EEeeCCcc-ccchh-h-h-c-cHHHHHHHHHHHHHHHhhhhcCCC-CceE
Q 019606 173 ALRKWYPSLRPEMEFRCFVR-G--RCLV--GISQREVT-MCYPA-L-S-E-KKNDIKVLIQELFDSNVRQEFESE-NYTF 241 (338)
Q Consensus 173 vLrkW~~~i~ps~EFRcFV~-~--~~Li--aISQr~~~-~~y~~-L-~-~-~~~~i~~~I~~F~~~~i~~~~~~~-~yv~ 241 (338)
++-+|. +. ..|+.|.|- + |+++ +++|+... ..+.. + . . ..+++...+.+... .+...+... -+-+
T Consensus 210 lvEe~i-~~--~~Eisv~v~~~~~G~~~~~~~~e~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~-~i~~~lg~~G~~~v 285 (419)
T 4e4t_A 210 VLEKRL-PL--KYEVSALIARGADGRSAAFPLAQNVHHNGILALTIVPAPAADTARVEEAQQAAV-RIADTLGYVGVLCV 285 (419)
T ss_dssp EEEECC-CE--EEEEEEEEEECTTSCEEECCCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHH-HHHHHHTCCEEEEE
T ss_pred EEeecC-CC--CeEEEEEEEEcCCCCEEEEeCeEEEeeCCeEEEEEcCCCCCCHHHHHHHHHHHH-HHHHHCCCeeEEEE
Confidence 778887 33 689999875 3 4443 33443221 11210 1 0 1 23445555555444 333344433 3468
Q ss_pred EEEecCCCcEEEEEecCCCCC
Q 019606 242 DVYVTKDERVKILDFNPWGAF 262 (338)
Q Consensus 242 DVyi~~~~~v~LID~NPf~~~ 262 (338)
|+.++.+++++++|+||=-..
T Consensus 286 E~~~~~dG~~~v~EiNpR~~~ 306 (419)
T 4e4t_A 286 EFFVLEDGSFVANEMAPRPHN 306 (419)
T ss_dssp EEEEETTCCEEEEEEESSCCG
T ss_pred EEEEeCCCCEEEEEEeCCCCC
Confidence 999998888999999996543
No 62
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=30.61 E-value=30 Score=33.68 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCceEEEEecCCCcEEEEEecCCCC
Q 019606 237 ENYTFDVYVTKDERVKILDFNPWGA 261 (338)
Q Consensus 237 ~~yv~DVyi~~~~~v~LID~NPf~~ 261 (338)
+=|-+|+.|+.+.++||||+|..-.
T Consensus 316 El~G~D~lid~~l~~wllEVN~~P~ 340 (380)
T 3tig_A 316 QLFGFDFMVDKNLKVWLIEVNGAPA 340 (380)
T ss_dssp EEEEEEEEEBTTCCEEEEEEESSCC
T ss_pred EEEeEEEEEcCCCcEEEEEEeCCCC
Confidence 3457899999999999999998654
No 63
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=27.39 E-value=1.4e+02 Score=28.65 Aligned_cols=94 Identities=13% Similarity=0.208 Sum_probs=60.6
Q ss_pred EEEeccCCCCCCCceEEEEEeCCeEEEEeeCCcc---ccc-----------hh-hhccHHHHHHHHHHHHHHHhhhhcCC
Q 019606 172 LALRKWYPSLRPEMEFRCFVRGRCLVGISQREVT---MCY-----------PA-LSEKKNDIKVLIQELFDSNVRQEFES 236 (338)
Q Consensus 172 LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~---~~y-----------~~-L~~~~~~i~~~I~~F~~~~i~~~~~~ 236 (338)
.++.++.+ - +..--||||-+++++|.-.|.-. .-| +. |.+...+|.. ++...|..
T Consensus 198 ~i~QEFI~-~-~G~DIRv~vVG~~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~Lt~eek~iA~--------kaa~a~G~ 267 (330)
T 3t7a_A 198 YIYEEFMP-T-DGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVILNAREKLIAW--------KVCLAFKQ 267 (330)
T ss_dssp EEEEECCC-C-SSEEEEEEEESTTCEEEEEEECTTSSCBCCBCTTSCBCCEECCCCHHHHHHHH--------HHHHHTTB
T ss_pred EEEEeccC-C-CCceEEEEEECCEEEEEEEEeCCCCCCcEEEcCCCCceeeeecCCHHHHHHHH--------HHHHHhCC
Confidence 35588884 3 78999999999999987777542 111 11 2222233333 34456777
Q ss_pred CCceEEEEecCCCcEEEEEecCCCCCcCCCccchHHHhhhc
Q 019606 237 ENYTFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNV 277 (338)
Q Consensus 237 ~~yv~DVyi~~~~~v~LID~NPf~~~Td~lLFsW~el~~~~ 277 (338)
.=+-||+.... ++.+++|+|.|.-.-+. -==|+++..++
T Consensus 268 ~v~GVDlLrs~-~~~~V~EVNg~~fvk~~-~~yyd~~a~il 306 (330)
T 3t7a_A 268 TVCGFDLLRAN-GQSYVCDVNGFSFVKNS-MKYYDDCAKIL 306 (330)
T ss_dssp SEEEEEEEEET-TEEEEEEEEESCCCSSC-HHHHHHHHHHH
T ss_pred ceEEEEEEEEC-CccEEEEeCCCccccCc-hhHHHHHHHHH
Confidence 77889998875 57789999999865444 22366655543
No 64
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=24.22 E-value=1.1e+02 Score=32.44 Aligned_cols=80 Identities=18% Similarity=0.061 Sum_probs=51.7
Q ss_pred HHHHH-HHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 98 IKESI-ESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 98 I~~aI-~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
+.+++ +++|..|+.|-...+-.-+..+..+ .+.+.+++...+.. ++.. + -.+++-+
T Consensus 516 a~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~---~v~~~eel~~al~~----------a~~~--~--------~~vlVEe 572 (757)
T 3ln7_A 516 AVASYALFENRAVVIKPKSTNYGLGITIFQQ---GVQNREDFAKALEI----------AFRE--D--------KEVMVED 572 (757)
T ss_dssp HHHGGGGSSSSCEEEEESSCSTTTTCEECSS---CCCCHHHHHHHHHH----------HHHH--C--------SSEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCeEEecC---CCCCHHHHHHHHHH----------HHhc--C--------CcEEEEE
Confidence 33444 6778889999887665444433200 13788887655432 1211 1 1256777
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeeCCc
Q 019606 177 WYPSLRPEMEFRCFVRGRCLVGISQREV 204 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~~~~LiaISQr~~ 204 (338)
|. +..|+||+|-+++++|+..|..
T Consensus 573 fI----~G~Ei~v~Vlggkvvaai~R~p 596 (757)
T 3ln7_A 573 YL----VGTEYRFFVLGDETLAVLLRVP 596 (757)
T ss_dssp CC----CSEEEEEEEETTEEEEEEEECC
T ss_pred cC----CCcEEEEEEECCEEEEEEEEec
Confidence 76 3689999999999999999975
No 65
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=23.89 E-value=92 Score=29.20 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=71.1
Q ss_pred HHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEec
Q 019606 97 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRK 176 (338)
Q Consensus 97 ~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrk 176 (338)
.+.++++++|..|+.|-...+- ++ .+...|++.+|+...+.. ... ..+++-+
T Consensus 136 ~~~~~~~~~g~P~vvKp~~gg~-~g-----~Gv~~v~~~~el~~a~~~--------------~~~--------~~~ivEe 187 (377)
T 3orq_A 136 DIDKAIETLGYPFIVKTRFGGY-DG-----KGQVLINNEKDLQEGFKL--------------IET--------SECVAEK 187 (377)
T ss_dssp HHHHHHHHTCSSEEEEESSSCC-TT-----TTEEEECSTTSHHHHHHH--------------HTT--------SCEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CC-----CCeEEECCHHHHHHHHHh--------------cCC--------CcEEEEc
Confidence 3667778888889999765420 11 133457776665443321 110 2356677
Q ss_pred cCCCCCCCceEEEEEe---CCeEEE--EeeCCc-cccc-----hh-hhccHHHHHHHHHHHHHHHhhhhcCCC-CceEEE
Q 019606 177 WYPSLRPEMEFRCFVR---GRCLVG--ISQREV-TMCY-----PA-LSEKKNDIKVLIQELFDSNVRQEFESE-NYTFDV 243 (338)
Q Consensus 177 W~~~i~ps~EFRcFV~---~~~Lia--ISQr~~-~~~y-----~~-L~~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DV 243 (338)
|. . -..|+.|.|- +|+++. +.+... ...+ |. +.. ...+.+... .+...+... -+-+|+
T Consensus 188 ~i-~--g~~E~sv~~~~~~~g~~~~~~~~e~~~~~g~~~~~~~Pa~l~~-----~~~~~~~a~-~i~~~lg~~G~~~ve~ 258 (377)
T 3orq_A 188 YL-N--IKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDK-----TAEAKEQVN-KIIQSIHFIGTFTVEF 258 (377)
T ss_dssp CC-C--EEEEEEEEEEECGGGCEEECCCEEEEEETTEEEEEEESCSSCC-----HHHHHHHHH-HHHTTSCCCEEEEEEE
T ss_pred cC-C--CCEEEEEEEEEeCCCCEEEECCEeEEEECCEEEEEECCCCCCH-----HHHHHHHHH-HHHHHCCCeEEEEEEE
Confidence 76 2 3378888886 344433 332211 1111 11 222 334444443 334455554 346999
Q ss_pred EecCCCcEEEEEecCCCC
Q 019606 244 YVTKDERVKILDFNPWGA 261 (338)
Q Consensus 244 yi~~~~~v~LID~NPf~~ 261 (338)
.++++++++++|+||--.
T Consensus 259 ~~~~~g~~~v~EinpR~~ 276 (377)
T 3orq_A 259 FIDSNNQLYVNEIAPRPH 276 (377)
T ss_dssp EEETTCCEEEEEEESSCC
T ss_pred EEeCCCcEEEEEeeCCcC
Confidence 999888999999999754
No 66
>1tuw_A Tetracenomycin polyketide synthesis protein TCMI; dimeric ??? ferredoxin-like fold tetracenomycin C biosynthes unknown function; 1.90A {Streptomyces glaucescens} SCOP: d.58.4.8
Probab=23.41 E-value=10 Score=30.79 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=17.0
Q ss_pred CCCCchhHHHHHHHHHHHhCCeeeeecccCCCCccc
Q 019606 87 SPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAA 122 (338)
Q Consensus 87 ~~~~Fpel~~~I~~aI~~lgG~vfpKLNwssPkDa~ 122 (338)
..|.|-++++++..-|.-|. | .|.+||||.
T Consensus 68 ~~P~f~~i~~~L~~yi~pYd----P--tWr~P~Dam 97 (109)
T 1tuw_A 68 SHPLFQEVNERVGQYLTPYA----Q--DWEELKDSK 97 (109)
T ss_dssp SCGGGHHHHHHHHTTEEESS----T--TCCSGGGGB
T ss_pred cCcHHHHHHHHHHHhcCCCC----C--CCCChhhhh
Confidence 34556554444433322222 4 999999993
No 67
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=22.64 E-value=2.3e+02 Score=21.49 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=35.6
Q ss_pred eEEEEeeCCccccchhhhccHHHHHHHHHHHHHHHhhhhcCCCCceEEEEe-cCCCcEEEEEec
Q 019606 195 CLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYV-TKDERVKILDFN 257 (338)
Q Consensus 195 ~LiaISQr~~~~~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DVyi-~~~~~v~LID~N 257 (338)
+++-++.|.+ . -++|...+.+|...|..|+. + + -+.|-+ .+++.+-++++|
T Consensus 24 qliLa~dR~~-~-p~~l~~lk~eil~VIskYv~--i-------d-~v~V~l~e~~~~~~vLe~n 75 (80)
T 3ku7_A 24 KLILAKERTL-N-LPYMEEMRKEIIAVIQKYTK--S-------S-DIHFKTLDSNQSVETIEVE 75 (80)
T ss_dssp EEEEEEESSC-C-CTTHHHHHHHHHHHHHHHHC--C-------C-EEEEECC---CCEEEEEEE
T ss_pred HHHHHHhcCC-C-HHHHHHHHHHHHHHHHHHcC--c-------c-ceEEEEEecCCCEEEEEEE
Confidence 6777788864 2 27888889999999999885 1 2 566666 566677777777
No 68
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=22.33 E-value=29 Score=27.66 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=24.3
Q ss_pred EEEeccCCCCCCCceEEEEEeC-CeEEEEeeCCc
Q 019606 172 LALRKWYPSLRPEMEFRCFVRG-RCLVGISQREV 204 (338)
Q Consensus 172 LvLrkW~~~i~ps~EFRcFV~~-~~LiaISQr~~ 204 (338)
.+|||+ ++....|||+||-+ +++..|||-++
T Consensus 27 ~ALkKF--~ledpskw~Vcvtqssr~~~it~e~f 58 (110)
T 1k8r_B 27 IALKKF--SLEDASKFIVCVSQSSRIKLITEEEF 58 (110)
T ss_dssp HHHHHH--TCCCTTSEEEEEECSSSEEECCCC--
T ss_pred HHHHHc--CCCChhHeEEEEecCceEEEecHhHH
Confidence 457777 68888999999974 79999999876
No 69
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=20.91 E-value=3.2e+02 Score=25.63 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=69.6
Q ss_pred HHHHHHHhCCeeeeecccC-CCCcccccccCCcccccC--HHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEE
Q 019606 98 IKESIESLGGAVFPKLNWS-APKDAAWISTSGTLRCTS--FCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLAL 174 (338)
Q Consensus 98 I~~aI~~lgG~vfpKLNws-sPkDa~Wi~~~~sl~c~s--~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvL 174 (338)
+.++++++|-.|+.|-... +-.- +...|++ .+|+-..+ + . .+++
T Consensus 106 ~~~~~~~~G~P~VvKp~~~G~~Gk-------Gv~~v~~~~~~el~~a~-------------~---------~----~viv 152 (355)
T 3eth_A 106 WPAVFDRLGELAIVKRRTGGYDGR-------GQWRLRANETEQLPAEC-------------Y---------G----ECIV 152 (355)
T ss_dssp HHHHHHHHCSEEEEEESSSCCTTT-------TEEEEETTCGGGSCGGG-------------T---------T----TEEE
T ss_pred HHHHHHHcCCCEEEEecCCCCCCC-------eEEEEcCCCHHHHHHHh-------------h---------C----CEEE
Confidence 5677788998999997753 2222 2234555 55532210 1 0 2567
Q ss_pred eccCCCCCCCceEEEEEe---CCeEEE--Ee---eCCccccchh-hh--ccHHHHHHHHHHHHHHHhhhhcCCC-CceEE
Q 019606 175 RKWYPSLRPEMEFRCFVR---GRCLVG--IS---QREVTMCYPA-LS--EKKNDIKVLIQELFDSNVRQEFESE-NYTFD 242 (338)
Q Consensus 175 rkW~~~i~ps~EFRcFV~---~~~Lia--IS---Qr~~~~~y~~-L~--~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~D 242 (338)
-+|. + -.+|+-|.|- +|+++. +. |++- .|.. +. ...+++...+.+... .+...+... -+.+|
T Consensus 153 Ee~I-~--~~~Eisv~v~~~~~G~~~~~p~~e~~~~~g--~~~~~~~pa~l~~~~~~~~~~~a~-~i~~aLg~~G~~~vE 226 (355)
T 3eth_A 153 EQGI-N--FSGEVSLVGARGFDGSTVFYPLTHNLHQDG--ILRTSVAFPQANAQQQARAEEMLS-AIMQELGYVGVMAME 226 (355)
T ss_dssp EECC-C--CSEEEEEEEEECTTSCEEECCCEEEEEETT--EEEEEEECSSCCHHHHHHHHHHHH-HHHHHHTCCEEEEEE
T ss_pred EEcc-C--CCcEEEEEEEEcCCCCEEEECCEEEEeeCC--eEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCeeEEEEE
Confidence 7776 3 3578888774 345433 22 3332 1211 11 123455555555554 333344433 34689
Q ss_pred EEecCCCcEEEEEecCCCCC
Q 019606 243 VYVTKDERVKILDFNPWGAF 262 (338)
Q Consensus 243 Vyi~~~~~v~LID~NPf~~~ 262 (338)
+.++. ++++++|+||=-..
T Consensus 227 f~~~~-~~~~v~EinpR~~~ 245 (355)
T 3eth_A 227 CFVTP-QGLLINELAPRVHN 245 (355)
T ss_dssp EEEET-TEEEEEEEESSCCG
T ss_pred EEEEC-CcEEEEEeeCCCCC
Confidence 99986 58999999996443
Done!