Query 019607
Match_columns 338
No_of_seqs 142 out of 420
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 100.0 7.3E-31 1.6E-35 252.3 17.4 276 2-286 6-294 (300)
2 KOG2922 Uncharacterized conser 99.9 1.8E-24 3.9E-29 205.7 5.5 275 3-285 21-307 (335)
3 TIGR03340 phn_DUF6 phosphonate 99.4 2.2E-10 4.8E-15 108.6 23.2 257 4-282 2-281 (281)
4 PRK15430 putative chlorampheni 99.3 9.2E-09 2E-13 98.4 28.9 257 2-286 7-287 (296)
5 PRK11689 aromatic amino acid e 99.1 6.7E-08 1.5E-12 92.4 27.4 258 4-284 5-287 (295)
6 PRK11453 O-acetylserine/cystei 99.1 6.7E-08 1.5E-12 92.5 27.4 264 5-284 6-287 (299)
7 PLN00411 nodulin MtN21 family 99.1 5.4E-08 1.2E-12 96.2 25.4 212 59-284 92-328 (358)
8 TIGR00950 2A78 Carboxylate/Ami 99.1 6.8E-08 1.5E-12 89.5 24.2 206 50-279 52-259 (260)
9 PRK11272 putative DMT superfam 98.9 7.5E-07 1.6E-11 85.0 24.2 207 50-285 74-286 (292)
10 PRK02971 4-amino-4-deoxy-L-ara 98.9 6.5E-08 1.4E-12 82.5 13.8 117 3-119 2-124 (129)
11 PRK10532 threonine and homoser 98.9 2.7E-06 5.9E-11 81.3 26.5 248 3-283 12-280 (293)
12 TIGR00776 RhaT RhaT L-rhamnose 98.8 1E-06 2.3E-11 84.4 22.4 262 4-284 2-288 (290)
13 TIGR00817 tpt Tpt phosphate/ph 98.7 2.6E-06 5.6E-11 81.4 20.0 215 50-285 71-294 (302)
14 PRK15051 4-amino-4-deoxy-L-ara 98.6 6.9E-07 1.5E-11 74.2 12.3 104 5-116 3-108 (111)
15 TIGR00688 rarD rarD protein. T 98.6 3.6E-05 7.8E-10 71.8 24.5 226 4-253 3-255 (256)
16 COG2510 Predicted membrane pro 98.6 6E-07 1.3E-11 76.1 10.6 116 1-116 1-138 (140)
17 COG0697 RhaT Permeases of the 98.6 4.8E-05 1E-09 70.4 24.1 209 50-284 75-287 (292)
18 PF13536 EmrE: Multidrug resis 98.5 7.1E-07 1.5E-11 73.7 9.7 67 51-118 41-107 (113)
19 PF06027 DUF914: Eukaryotic pr 98.5 3.1E-05 6.8E-10 76.0 21.8 74 43-116 75-150 (334)
20 PF10639 UPF0546: Uncharacteri 98.5 8.3E-07 1.8E-11 74.0 9.0 103 12-114 5-111 (113)
21 PTZ00343 triose or hexose phos 98.4 6.1E-05 1.3E-09 74.1 22.6 210 58-284 127-348 (350)
22 PF04142 Nuc_sug_transp: Nucle 98.2 0.00056 1.2E-08 64.3 21.2 202 50-260 22-235 (244)
23 COG2962 RarD Predicted permeas 97.9 0.0039 8.5E-08 59.8 22.3 212 37-284 60-283 (293)
24 PRK10452 multidrug efflux syst 97.8 0.00047 1E-08 58.2 12.5 97 6-116 5-102 (120)
25 PRK10532 threonine and homoser 97.7 0.00077 1.7E-08 64.4 13.6 114 3-116 148-280 (293)
26 PF08449 UAA: UAA transporter 97.7 0.034 7.3E-07 53.4 24.9 70 47-116 66-135 (303)
27 PF00893 Multi_Drug_Res: Small 97.6 0.00039 8.5E-09 55.8 9.0 85 9-108 7-93 (93)
28 TIGR00950 2A78 Carboxylate/Ami 97.5 0.0016 3.5E-08 60.2 12.9 110 3-112 128-259 (260)
29 PRK09541 emrE multidrug efflux 97.5 0.0023 5E-08 53.2 11.9 96 6-116 5-102 (110)
30 PRK11689 aromatic amino acid e 97.4 0.0022 4.7E-08 61.4 12.8 112 3-115 156-285 (295)
31 TIGR03340 phn_DUF6 phosphonate 97.4 0.0012 2.6E-08 62.5 10.5 111 4-114 145-280 (281)
32 PF00892 EamA: EamA-like trans 97.3 0.00062 1.3E-08 55.1 6.2 66 50-115 59-124 (126)
33 PRK11453 O-acetylserine/cystei 97.3 0.0064 1.4E-07 58.2 13.9 113 3-115 143-285 (299)
34 PRK11272 putative DMT superfam 97.2 0.0058 1.3E-07 58.3 13.2 114 3-116 150-284 (292)
35 PF06800 Sugar_transport: Suga 97.2 0.13 2.8E-06 49.2 22.1 207 54-281 54-268 (269)
36 PRK10650 multidrug efflux syst 97.2 0.0088 1.9E-07 49.7 11.7 95 6-115 10-106 (109)
37 PLN00411 nodulin MtN21 family 97.1 0.0064 1.4E-07 60.3 12.4 114 3-116 189-327 (358)
38 COG2510 Predicted membrane pro 97.1 0.0016 3.5E-08 55.5 6.9 69 209-284 71-139 (140)
39 PRK11431 multidrug efflux syst 97.1 0.0087 1.9E-07 49.4 11.0 68 48-115 32-100 (105)
40 COG2076 EmrE Membrane transpor 97.1 0.0098 2.1E-07 49.2 11.0 70 46-115 31-101 (106)
41 PRK15051 4-amino-4-deoxy-L-ara 96.9 0.032 7E-07 46.2 13.0 66 213-285 45-110 (111)
42 COG5006 rhtA Threonine/homoser 96.8 0.3 6.6E-06 46.4 19.5 172 62-260 88-264 (292)
43 PRK15430 putative chlorampheni 96.5 0.042 9.1E-07 52.5 12.4 109 7-115 153-283 (296)
44 COG0697 RhaT Permeases of the 96.4 0.043 9.4E-07 50.6 11.5 114 2-116 153-286 (292)
45 KOG4510 Permease of the drug/m 96.2 0.02 4.3E-07 54.7 7.9 111 5-116 40-168 (346)
46 PRK13499 rhamnose-proton sympo 95.9 2 4.4E-05 42.6 22.6 114 2-116 6-152 (345)
47 COG5006 rhtA Threonine/homoser 95.4 0.28 6.1E-06 46.7 12.1 114 3-116 148-281 (292)
48 TIGR00776 RhaT RhaT L-rhamnose 95.2 0.24 5.3E-06 47.4 11.4 112 2-116 151-287 (290)
49 PF13536 EmrE: Multidrug resis 94.8 0.31 6.7E-06 39.9 9.5 62 216-285 46-107 (113)
50 PRK02971 4-amino-4-deoxy-L-ara 94.8 0.7 1.5E-05 39.4 11.9 71 208-285 51-123 (129)
51 KOG3912 Predicted integral mem 94.3 0.09 2E-06 50.7 5.8 104 13-116 52-157 (372)
52 PF00892 EamA: EamA-like trans 93.9 0.25 5.5E-06 39.5 7.0 65 212-283 61-125 (126)
53 TIGR00817 tpt Tpt phosphate/ph 93.2 0.96 2.1E-05 43.1 10.9 115 2-116 144-292 (302)
54 KOG2234 Predicted UDP-galactos 93.0 10 0.00022 37.6 27.0 64 53-116 100-163 (345)
55 PRK09541 emrE multidrug efflux 92.6 5.2 0.00011 33.1 13.4 65 212-284 37-103 (110)
56 COG2076 EmrE Membrane transpor 92.0 4.5 9.7E-05 33.5 11.8 77 197-284 25-103 (106)
57 KOG4831 Unnamed protein [Funct 91.0 0.93 2E-05 37.6 6.6 98 15-113 15-121 (125)
58 PRK10650 multidrug efflux syst 90.7 6.1 0.00013 32.8 11.4 64 211-282 41-106 (109)
59 TIGR00803 nst UDP-galactose tr 90.2 8.5 0.00018 34.9 13.2 46 214-260 161-206 (222)
60 PF06027 DUF914: Eukaryotic pr 90.1 3.1 6.8E-05 41.1 10.8 115 2-116 167-304 (334)
61 PRK11431 multidrug efflux syst 90.1 5.9 0.00013 32.6 10.8 64 212-283 36-101 (105)
62 PF03151 TPT: Triose-phosphate 87.2 14 0.0003 31.0 11.7 111 4-114 1-150 (153)
63 PRK10452 multidrug efflux syst 85.6 21 0.00045 30.1 12.3 66 212-283 37-102 (120)
64 KOG2765 Predicted membrane pro 84.7 9.1 0.0002 38.5 10.3 81 42-122 153-236 (416)
65 PTZ00343 triose or hexose phos 83.9 24 0.00051 34.7 13.1 37 79-115 310-346 (350)
66 TIGR00803 nst UDP-galactose tr 80.9 7.9 0.00017 35.1 7.9 110 3-113 85-220 (222)
67 COG1742 Uncharacterized conser 79.9 16 0.00034 30.3 8.3 66 51-118 39-105 (109)
68 PF00893 Multi_Drug_Res: Small 78.5 27 0.00058 27.7 9.4 50 212-261 36-85 (93)
69 PF05653 Mg_trans_NIPA: Magnes 73.7 26 0.00055 34.0 9.5 106 170-283 8-121 (300)
70 COG2962 RarD Predicted permeas 72.6 20 0.00043 34.8 8.3 66 219-294 86-151 (293)
71 COG3169 Uncharacterized protei 68.3 10 0.00022 31.1 4.5 62 51-114 44-112 (116)
72 PF08449 UAA: UAA transporter 68.2 80 0.0017 30.1 11.6 112 3-115 154-295 (303)
73 PRK02237 hypothetical protein; 65.9 11 0.00024 31.3 4.4 36 81-116 69-104 (109)
74 COG4944 Uncharacterized protei 65.9 1.1E+02 0.0024 28.1 14.0 161 47-218 26-203 (213)
75 PF02694 UPF0060: Uncharacteri 64.7 11 0.00024 31.3 4.1 37 80-116 66-102 (107)
76 PF10639 UPF0546: Uncharacteri 62.1 40 0.00086 28.2 7.1 61 215-281 51-111 (113)
77 TIGR00688 rarD rarD protein. T 56.7 89 0.0019 28.7 9.4 60 217-283 82-141 (256)
78 PF06532 DUF1109: Protein of u 54.3 1.7E+02 0.0037 26.6 17.6 29 69-97 48-76 (204)
79 PF08507 COPI_assoc: COPI asso 53.3 37 0.0008 28.8 5.7 41 247-294 75-115 (136)
80 PF06800 Sugar_transport: Suga 51.9 1.8E+02 0.004 27.9 10.7 65 217-284 57-122 (269)
81 PF04342 DUF486: Protein of un 46.1 23 0.00051 29.3 3.1 60 51-112 37-103 (108)
82 PF04657 DUF606: Protein of un 45.9 75 0.0016 27.2 6.5 68 46-113 64-137 (138)
83 PRK02983 lysS lysyl-tRNA synth 42.0 2.9E+02 0.0063 31.9 12.0 58 44-101 74-142 (1094)
84 KOG1583 UDP-N-acetylglucosamin 41.7 1.2E+02 0.0025 29.8 7.5 67 48-116 67-136 (330)
85 PF03605 DcuA_DcuB: Anaerobic 36.6 4.6E+02 0.01 26.4 16.4 44 221-264 112-164 (364)
86 KOG1441 Glucose-6-phosphate/ph 36.0 6.2 0.00013 38.8 -2.0 59 54-112 92-150 (316)
87 PF03151 TPT: Triose-phosphate 31.3 2.6E+02 0.0056 23.1 7.5 62 212-280 85-149 (153)
88 PF15048 OSTbeta: Organic solu 31.1 94 0.002 26.5 4.6 39 252-290 24-62 (125)
89 COG3859 Predicted membrane pro 29.5 4.3E+02 0.0092 23.9 8.6 83 171-263 53-145 (185)
90 KOG1580 UDP-galactose transpor 28.8 71 0.0015 30.6 3.8 68 44-114 236-310 (337)
91 PRK15403 multidrug efflux syst 27.5 3.9E+02 0.0084 26.3 9.2 39 38-76 210-248 (413)
92 COG5336 Uncharacterized protei 27.1 2.5E+02 0.0054 23.6 6.3 45 239-286 52-96 (116)
93 KOG4314 Predicted carbohydrate 26.7 1.4E+02 0.003 27.9 5.2 56 61-116 69-124 (290)
94 COG3630 OadG Na+-transporting 26.6 1.1E+02 0.0024 24.3 4.0 24 313-336 61-84 (84)
95 PF03209 PUCC: PUCC protein; 24.6 6.2E+02 0.013 25.9 9.9 78 39-116 201-293 (403)
96 PRK02919 oxaloacetate decarbox 24.5 1.9E+02 0.0042 22.7 5.0 11 318-328 67-77 (82)
97 PRK02983 lysS lysyl-tRNA synth 22.8 1.2E+03 0.027 26.9 14.5 69 46-114 10-91 (1094)
98 PF04284 DUF441: Protein of un 21.8 3E+02 0.0065 24.0 6.1 85 173-263 44-130 (140)
99 PF09534 Trp_oprn_chp: Tryptop 21.1 1.8E+02 0.004 26.4 4.9 24 261-284 119-143 (189)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.97 E-value=7.3e-31 Score=252.29 Aligned_cols=276 Identities=22% Similarity=0.322 Sum_probs=204.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhh
Q 019607 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC 80 (338)
Q Consensus 2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~ 80 (338)
++++.+|++|+++++.|..+||+++.+.++.+.+. +..+.|+|||.||.|+.++++|.++|+.||+++|.++|||+++.
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~ 85 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL 85 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence 57999999999999999999999999887644332 34568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc-cCCCCCCCCccc-hhhH---HHHHHHHHHHHHHHH-HHHHHhh
Q 019607 81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSIS-IFQL---PWLAFVVSILFVLLN-GWLRICK 154 (338)
Q Consensus 81 ~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~-~~~~~~~~~~~~-~~~~---~~~~~~~~~~~v~l~-~~~~~~~ 154 (338)
+++++++++++++|||++++||.|++++++|..++. .++++++..+.+ .... +.........++... ......+
T Consensus 86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~ 165 (300)
T PF05653_consen 86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKP 165 (300)
T ss_pred hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999998765 444433322211 1111 111111111111111 1111122
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hccCccchhHHHH---HHHHHHHHHHHHHHHHHhhhc
Q 019607 155 HQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVF---LEQGFPTMLVPVC---ISISICCSGTGFYYQTRGLKH 228 (338)
Q Consensus 155 ~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~---~~~g~~~l~~p~~---l~~~v~~~~~g~~l~q~Al~~ 228 (338)
|.++. +-..|...+++..+.+...+|..... ..+|.+++.+|.. +..++.+...++++.|+|++.
T Consensus 166 r~g~~---------~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~ 236 (300)
T PF05653_consen 166 RYGRR---------NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKR 236 (300)
T ss_pred hhccc---------ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21111 23568888899999999999974322 2245555544433 333455678889999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019607 229 GRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS 286 (338)
Q Consensus 229 G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~ 286 (338)
.++..+.....+.-...+++-|.++|+|..+.+++....+.+|+..++.||++++...
T Consensus 237 fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 237 FDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred ccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 9965544333666677889999999999999999999999999999999999998653
No 2
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=1.8e-24 Score=205.71 Aligned_cols=275 Identities=21% Similarity=0.270 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCG 81 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~ 81 (338)
.++.+|+.|++.++.+..+||++..+....+.+. ..=..|++.|.||+|++.|++|..+++.||+|+|.++|.|+++++
T Consensus 21 ~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAls 100 (335)
T KOG2922|consen 21 IGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALS 100 (335)
T ss_pred eeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHH
Confidence 3567899999999999999999998765422111 111358899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc-cCCCCCCCCcc-chhhH---HHHHHHHHHHHHHHHHHHHHhhcc
Q 019607 82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSI-SIFQL---PWLAFVVSILFVLLNGWLRICKHQ 156 (338)
Q Consensus 82 l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~-~~~~~~~~~~~-~~~~~---~~~~~~~~~~~v~l~~~~~~~~~~ 156 (338)
+++.+++++++++|+++..+.+|+++|++|..+++ .+|++++..+. +.++. |...+...+.+ .....+....++
T Consensus 101 vi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~ii-l~~~il~~~~~p 179 (335)
T KOG2922|consen 101 VIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIII-LIVLILIFFYAP 179 (335)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHH-HHHHHHheeecc
Confidence 99999999999999999999999999999998876 56655554331 11221 11111111111 111111122222
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhccCccchhHHHH---HHHHHHHHHHHHHHHHHhhhcCC
Q 019607 157 RREQEMIEFEVVEEIIYGLESGILFGMASVISKLGF---VFLEQGFPTMLVPVC---ISISICCSGTGFYYQTRGLKHGR 230 (338)
Q Consensus 157 r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~---~~~~~g~~~l~~p~~---l~~~v~~~~~g~~l~q~Al~~G~ 230 (338)
|..+. .-+.|...+++.-+++...+|..- +...+|..++..|.. +...+.+....+.+.|+|++.-+
T Consensus 180 ~~g~t-------nilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fn 252 (335)
T KOG2922|consen 180 RYGQT-------NILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFN 252 (335)
T ss_pred ccccc-------ceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22221 237789999999999999999732 344456666555533 34445566788999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607 231 AIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS 285 (338)
Q Consensus 231 ~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s 285 (338)
+..++..--+.-....++.|.+.|.|..+.+...+.++++|+..+..|++++.+.
T Consensus 253 tslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~ 307 (335)
T KOG2922|consen 253 TSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRT 307 (335)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeee
Confidence 7666644478888889999999999999999999999999999999999999653
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.36 E-value=2.2e-10 Score=108.58 Aligned_cols=257 Identities=16% Similarity=0.176 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc--c--hHH-H--HHH-------hh--hhhHH----HHHHHHHHHHHHHH
Q 019607 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K--LKV-I--RAY-------AV--NKAWV----IGFLMDIFGALLML 63 (338)
Q Consensus 4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~--~--~~~-l--~~l-------lr--~p~W~----~G~~~~~~G~~l~~ 63 (338)
+..+.+.++++++..++++||..++.++... . ... + ... .+ ++.|| .+......++.+..
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999988766443110 0 000 0 001 11 11222 34445667777889
Q ss_pred HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHH
Q 019607 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILF 143 (338)
Q Consensus 64 ~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (338)
.|+...|.+.++|+...+.+++.+++.+++|||+++++|.|+.++..|+..+...+.++ . ...... ..+..++
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~-~-~~~g~~---~~l~aal-- 154 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ-H-RRKAYA---WALAAAL-- 154 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc-c-chhHHH---HHHHHHH--
Confidence 99999999999999999999999999999999999999999999999998765322211 1 111111 1111111
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCc-cchhHH-HHHHHHHHHHHHHHH
Q 019607 144 VLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGF-PTMLVP-VCISISICCSGTGFY 220 (338)
Q Consensus 144 v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaG-l~fg~~a~l~K~~~~~~~~g~-~~l~~p-~~l~~~v~~~~~g~~ 220 (338)
....+..+.|+...+... .........++...+ +.+...... +. ++.. ...... ...+...+.+..++.
T Consensus 155 -~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~s~l~~~ 226 (281)
T TIGR03340 155 -GTAIYSLSDKAAALGVPA-FYSALGYLGIGFLAMGWPFLLLYLK-RH-----GRSMFPYARQILPSATLGGLMIGGAYA 226 (281)
T ss_pred -HHHHhhhhccccccchhc-ccccHHHHHHHHHHHHHHHHHHHHH-Hh-----ccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 122222233332211000 000000111111111 222221110 10 0000 000111 223445566778999
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019607 221 YQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 282 (338)
Q Consensus 221 l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l 282 (338)
+++++++..++..++.. ...+|++++++|+.+|||+.... ...|..+++.|++++
T Consensus 227 l~~~al~~~~a~~~~~~-~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 227 LVLWAMTRLPVATVVAL-RNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHhhCCceEEEee-cccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHhC
Confidence 99999999885443322 45689999999999999987432 356888888888653
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.27 E-value=9.2e-09 Score=98.39 Aligned_cols=257 Identities=12% Similarity=0.087 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHH------H-------------HHHhhhhhHH----HHHHHHHH
Q 019607 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------I-------------RAYAVNKAWV----IGFLMDIF 57 (338)
Q Consensus 2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l-------------~~llr~p~W~----~G~~~~~~ 57 (338)
..++.+.++++++++.....-|.. .+.|+... -.|. + ++..++++++ .|......
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG 85 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 357888999999999888887754 33333210 0010 0 0011123322 55566777
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHH
Q 019607 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF 137 (338)
Q Consensus 58 G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~ 137 (338)
.+.+.+.|+...|.+.+.-+..+..+++.+++.+++|||+++++|.|+++..+|+.++... +++ .. . ..+
T Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~----~~---~--~~l 155 (296)
T PRK15430 86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGS----LP---I--IAL 155 (296)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCC----cc---H--HHH
Confidence 8889999999999999999999999999999999999999999999999999999876521 111 11 1 111
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHHHHHHHHHHHHHH
Q 019607 138 VVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGT 217 (338)
Q Consensus 138 ~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p~~l~~~v~~~~~ 217 (338)
..++ ....+....|+...+... .......+....+..+.+. .... ...............++...+.+..
T Consensus 156 ~aa~---~~a~~~i~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~g~~t~i 225 (296)
T PRK15430 156 GLAF---SFAFYGLVRKKIAVEAQT---GMLIETMWLLPVAAIYLFA--IADS--STSHMGQNPMSLNLLLIAAGIVTTV 225 (296)
T ss_pred HHHH---HHHHHHHHHHhcCCCCch---hHHHHHHHHHHHHHHHHHH--HccC--CcccccCCcHHHHHHHHHHHHHHHH
Confidence 1111 122222233333221110 1111112222222221100 0000 0000000111111122223335678
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019607 218 GFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS 286 (338)
Q Consensus 218 g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~ 286 (338)
++++.++++++.++..++.. +..+|++++++|+.+|||+.... ...|..+++.++.+...+.
T Consensus 226 ~~~~~~~a~~~~~a~~~s~~-~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 226 PLLCFTAAATRLRLSTLGFF-QYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHHHH
Confidence 99999999999997655543 67899999999999999987443 3467777766666655544
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.14 E-value=6.7e-08 Score=92.42 Aligned_cols=258 Identities=15% Similarity=0.119 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHH-----HHHHh------hhhhH---HHHHHHHHHHHHHHHHHHhh
Q 019607 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV-----IRAYA------VNKAW---VIGFLMDIFGALLMLRALSQ 68 (338)
Q Consensus 4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~-----l~~ll------r~p~W---~~G~~~~~~G~~l~~~AL~~ 68 (338)
+.++++.+.++.+......|.+....|+... -.|. +.-.+ |+..| ..|.........++..++..
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4567888889999999999988877776432 1111 11111 11111 12222222333334455543
Q ss_pred ----cCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCC-C---CccchhhHH-HHHHHH
Q 019607 69 ----APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQE-P---SSISIFQLP-WLAFVV 139 (338)
Q Consensus 69 ----~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~-~---~~~~~~~~~-~~~~~~ 139 (338)
.|...+.-+..+..+++.+++..++|||+++++|.|+.+..+|+..+..++.+.. . ......... ...+..
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 164 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG 164 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence 3444445556677889999999999999999999999999999988763321100 0 000000010 111111
Q ss_pred HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHH-HHHHHHHHHHHHH
Q 019607 140 SILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVP-VCISISICCSGTG 218 (338)
Q Consensus 140 ~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p-~~l~~~v~~~~~g 218 (338)
+ ...+.+..+.||.+++.. .. ...+ ...++.+-...... +....... .... +.++.. ..+.++
T Consensus 165 a---~~~A~~~v~~k~~~~~~~-----~~-~~~~-~~~~~~l~~~~~~~----~~~~~~~~-~~~~~~l~~~~-~~t~~~ 228 (295)
T PRK11689 165 A---FIWAAYCNVTRKYARGKN-----GI-TLFF-ILTALALWIKYFLS----PQPAMVFS-LPAIIKLLLAA-AAMGFG 228 (295)
T ss_pred H---HHHHHHHHHHhhccCCCC-----ch-hHHH-HHHHHHHHHHHHHh----cCccccCC-HHHHHHHHHHH-HHHHHH
Confidence 1 122223333444432211 00 1111 11222211111110 00001111 1111 112332 456788
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607 219 FYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 219 ~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 284 (338)
++++++++|+.++..++.. ...+|++++++|++++||+.... ...|.++++.|+++...
T Consensus 229 ~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 9999999999997655544 57899999999999999987432 35788888888876654
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.14 E-value=6.7e-08 Score=92.51 Aligned_cols=264 Identities=19% Similarity=0.193 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHH------HHHHhhh-hhH---HH--HHHHHHHHHHHHHHHHhh-cC
Q 019607 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAYAVN-KAW---VI--GFLMDIFGALLMLRALSQ-AP 70 (338)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l~~llr~-p~W---~~--G~~~~~~G~~l~~~AL~~-~p 70 (338)
.+++++++++.+.....-|.+..+.++... ..|. +.-+.++ +.+ +. |+......+.+.+.++.. .|
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 85 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMP 85 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356788899999999988887766655421 1121 1112221 111 12 222223333455667766 47
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 019607 71 VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWL 150 (338)
Q Consensus 71 lsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~ 150 (338)
.+...-+..+..+++.+++.+++|||+++++|+|+++..+|+..+..+..+.. +....-. ..++... +....+.
T Consensus 86 a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~--~~~~~G~-~l~l~aa---l~~a~~~ 159 (299)
T PRK11453 86 AGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ--HVAMLGF-MLTLAAA---FSWACGN 159 (299)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc--chhHHHH-HHHHHHH---HHHHHHH
Confidence 77777778888899999999999999999999999999999887763221111 1010000 1112211 1222223
Q ss_pred HHhhcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhccCccc--hhHH-HHHHHHHHHHHHHHHHHHHhh
Q 019607 151 RICKHQRREQEMIEFEVVEEIIY-GLESGILFGMASVISKLGFVFLEQGFPT--MLVP-VCISISICCSGTGFYYQTRGL 226 (338)
Q Consensus 151 ~~~~~~r~~~~~~~~~~~~a~ll-g~aaGl~fg~~a~l~K~~~~~~~~g~~~--l~~p-~~l~~~v~~~~~g~~l~q~Al 226 (338)
.+.|+..+... ......-..+ .+.+++.+...+......... ...+.. ...+ ...|..+..+..+++++.+++
T Consensus 160 v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l 236 (299)
T PRK11453 160 IFNKKIMSHST--RPAVMSLVVWSALIPIIPFFVASLILDGSATM-IHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLL 236 (299)
T ss_pred HHHHHHhcccC--ccchhHHHHHHHHHHHHHHHHHHHHhcCchhh-hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343211100 0000111111 122222222222111110000 000011 1112 224566778889999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607 227 KHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 227 ~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 284 (338)
|+-++..++. ....+|+++.++|+.++||+.... ...|..+++.|+.+...
T Consensus 237 ~~~~a~~~s~-~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 237 GRYETWRVAP-LSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINVF 287 (299)
T ss_pred HhCCHHHHHH-HHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHhc
Confidence 9877554443 357899999999999999987332 35788888888876653
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.10 E-value=5.4e-08 Score=96.21 Aligned_cols=212 Identities=16% Similarity=0.163 Sum_probs=122.3
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHhhhcc-CCCCC---------
Q 019607 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA-GGEEQ--------- 122 (338)
Q Consensus 59 ~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~------l~~rl~~~~w~gv~l~~~Gl~~l~~-~~~~~--------- 122 (338)
+.++..++.+.|-+..-=+..+..+++.++++++ +|||+++++|+|+.++..|+.++.. ++...
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~ 171 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYL 171 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccc
Confidence 3457888889999999888999999999999999 6999999999999999999877642 22110
Q ss_pred ---CC---CccchhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 019607 123 ---EP---SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE 196 (338)
Q Consensus 123 ---~~---~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~ 196 (338)
.. .......++...+......+....+..+.|+..++ +... ...........++.+...+...... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~-~~~t~~~~~~~~~~~~~~~l~~~~~-~~-- 245 (358)
T PLN00411 172 NFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAA-FTVSFLYTVCVSIVTSMIGLVVEKN-NP-- 245 (358)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcH-hHHHHHHHHHHHHHHHHHHHHHccC-Cc--
Confidence 00 00011112111111111111222233334432111 1000 0112223444444444333321100 00
Q ss_pred cCccchhH---HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHH
Q 019607 197 QGFPTMLV---PVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWL 273 (338)
Q Consensus 197 ~g~~~l~~---p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~ 273 (338)
..+...++ ...+|..+ .+.+++++++++.++-.+..++.. ...+|++++++|+++|||+.... ..+|.+
T Consensus 246 ~~~~~~~~~~~~~i~y~~i-~t~lay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt~~------~~iG~~ 317 (358)
T PLN00411 246 SVWIIHFDITLITIVTMAI-ITSVYYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLYLG------CLIGGI 317 (358)
T ss_pred ccceeccchHHHHHHHHHH-HHHHHHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCcHH------HHHHHH
Confidence 00110011 11233334 345789999999987776555543 57899999999999999988433 457899
Q ss_pred HHHHHHHHHhh
Q 019607 274 LIMIGVVLLVS 284 (338)
Q Consensus 274 li~~gvv~l~~ 284 (338)
+++.|+.+...
T Consensus 318 LIl~Gv~l~~~ 328 (358)
T PLN00411 318 LITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHh
Confidence 99999987764
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.08 E-value=6.8e-08 Score=89.49 Aligned_cols=206 Identities=17% Similarity=0.136 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccch
Q 019607 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISI 129 (338)
Q Consensus 50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~ 129 (338)
.|.....+...+...|+...|.+.+..+..+..+++.+++..++|||+++++|.|+.++.+|+..+...++.+. ..
T Consensus 52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~----~~ 127 (260)
T TIGR00950 52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSI----NP 127 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccc----cH
Confidence 55566778888889999999999999999999999999999999999999999999999999988764332211 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcc-chhHH-HH
Q 019607 130 FQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFP-TMLVP-VC 207 (338)
Q Consensus 130 ~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~-~l~~p-~~ 207 (338)
.-. ...+... +.........|+..++... .......+....|..+-......+ ++... ...+. +.
T Consensus 128 ~G~-~~~l~a~---~~~a~~~~~~k~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~ 194 (260)
T TIGR00950 128 AGL-LLGLGSG---ISFALGTVLYKRLVKKEGP---ELLQFTGWVLLLGALLLLPFAWFL------GPNPQALSLQWGAL 194 (260)
T ss_pred HHH-HHHHHHH---HHHHHHHHHHhHHhhcCCc---hHHHHHHHHHHHHHHHHHHHHHhc------CCCCCcchHHHHHH
Confidence 111 1111111 1222222233332211100 000000011122211111111111 11111 11111 23
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHH
Q 019607 208 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGV 279 (338)
Q Consensus 208 l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gv 279 (338)
++..++.+..++.++.++++..++..++.. ...+|+++.++++.++||+.+. . ...|..+++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~E~~~~--~----~~~G~~li~~g~ 259 (260)
T TIGR00950 195 LYLGLIGTALAYFLWNKGLTLVDPSAASIL-ALAEPLVALLLGLLILGETLSL--P----QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHhc
Confidence 344455567889999999999986555544 5789999999999999998743 2 245666666654
No 9
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.90 E-value=7.5e-07 Score=85.01 Aligned_cols=207 Identities=17% Similarity=0.150 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHH-hhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccc
Q 019607 50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS 128 (338)
Q Consensus 50 ~G~~~~~~G~~l~~~AL-~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~ 128 (338)
.|......++.+...++ ...|.....-+..+..+++.+++.+ +|||+++++|.|+.+..+|+..+..+++.+ . .
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~-~-~-- 148 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLS-G-N-- 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccc-c-c--
Confidence 34444445566777787 8888888888888899999999975 799999999999999999987775332211 1 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCcc---chhH
Q 019607 129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGFP---TMLV 204 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaG-l~fg~~a~l~K~~~~~~~~g~~---~l~~ 204 (338)
..-. +..+...+ ..+......|+..++.. .....+....| +....... . .++.+. ...+
T Consensus 149 ~~G~-l~~l~a~~---~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~ 211 (292)
T PRK11272 149 PWGA-ILILIASA---SWAFGSVWSSRLPLPVG------MMAGAAEMLAAGVVLLIASL-L------SGERLTALPTLSG 211 (292)
T ss_pred hHHH-HHHHHHHH---HHHHHHHHHHhcCCCcc------hHHHHHHHHHHHHHHHHHHH-H------cCCcccccCCHHH
Confidence 1111 11121111 12222223344222111 01112222222 11111111 1 111111 1112
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607 205 P-VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 283 (338)
Q Consensus 205 p-~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 283 (338)
+ ...+..+..+..++.++++++|+.++..++.. ...+|+.+.++|+.++||+. ++. ...|..+++.|++.+.
T Consensus 212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~--t~~----~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETL--SPI----EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCC--cHH----HHHHHHHHHHHHHHHH
Confidence 2 22345555678899999999999986555543 57899999999999999986 332 3578889999998876
Q ss_pred hh
Q 019607 284 SS 285 (338)
Q Consensus 284 ~s 285 (338)
..
T Consensus 285 ~~ 286 (292)
T PRK11272 285 LG 286 (292)
T ss_pred HH
Confidence 43
No 10
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.87 E-value=6.5e-08 Score=82.54 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchH--HHHHHhhhh--hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK--VIRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS 78 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~--~l~~llr~p--~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~ 78 (338)
.+.++.+.+.++.+.|+.+-|+++.+.++.+.+.. .......+| .-+.|+.+.++++.+-..+++..|++...|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46788899999999999999999988765432221 122345677 55699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHhhhccCC
Q 019607 79 GCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (338)
Q Consensus 79 ~~~l~~~~~ls~~--~l~~rl~~~~w~gv~l~~~Gl~~l~~~~ 119 (338)
.....+....+.. ++||+++..+|+|+.++++|+.++..++
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 8888788777775 8999999999999999999999886443
No 11
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.86 E-value=2.7e-06 Score=81.27 Aligned_cols=248 Identities=17% Similarity=0.123 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chH------HHHHH-------hhhhhH----HHHHHHHHHHHHHHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK------VIRAY-------AVNKAW----VIGFLMDIFGALLMLR 64 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~------~l~~l-------lr~p~W----~~G~~~~~~G~~l~~~ 64 (338)
.++.+.+++.++.+.+...-|.+....|+... -.| .+.-+ .+++.| +.|.. ......+.+.
T Consensus 12 ~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~ 90 (293)
T PRK10532 12 LPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFYL 90 (293)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 57888999999999999999988776654321 001 00001 112233 45543 4555666778
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHHH
Q 019607 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFV 144 (338)
Q Consensus 65 AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (338)
++...|.+...-+..+..+++.+++ +||.+ ++.++.++..|+..+...+.+.. ..+..-. ...+..++
T Consensus 91 al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~~--~~~~~G~-ll~l~aa~--- 158 (293)
T PRK10532 91 SIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDVS--HVDLTGA-ALALGAGA--- 158 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCcc--cCChHHH-HHHHHHHH---
Confidence 8888888877666666666666665 35544 44555566677766542211111 1111101 11111111
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccC-cc-chhHH-HHHHHHHHHHHHHHHH
Q 019607 145 LLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQG-FP-TMLVP-VCISISICCSGTGFYY 221 (338)
Q Consensus 145 ~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g-~~-~l~~p-~~l~~~v~~~~~g~~l 221 (338)
....+....|+..++.. ...-......+++.....+ ...++ .. ....+ +.+|..++++.+++.+
T Consensus 159 ~~a~~~v~~r~~~~~~~-----~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 159 CWAIYILSGQRAGAEHG-----PATVAIGSLIAALIFVPIG--------ALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHHHHH--------HHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222333221111 0011111122222211111 11111 11 11111 2356777788999999
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607 222 QTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 283 (338)
Q Consensus 222 ~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 283 (338)
+++++|+-++..++.. +..+|+++.++|+++|||+.+. . ..+|..+++.|++...
T Consensus 226 ~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~~~--~----~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 226 EMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETLTL--I----QWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCCcH--H----HHHHHHHHHHHHHHHH
Confidence 9999999987665543 6789999999999999998733 2 3568888888887765
No 12
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.83 E-value=1e-06 Score=84.41 Aligned_cols=262 Identities=15% Similarity=0.132 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-ch--H-HH----HHHhhhh------hHHHHHHH---HHHHHHHHHHHH
Q 019607 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KL--K-VI----RAYAVNK------AWVIGFLM---DIFGALLMLRAL 66 (338)
Q Consensus 4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~--~-~l----~~llr~p------~W~~G~~~---~~~G~~l~~~AL 66 (338)
+++++++++++++.--+..|+-. ..+.... +. . .+ ....|+| .|..|++. ...|..+++.|.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai 80 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLGTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM 80 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 67899999999987666666542 2111110 00 0 00 0113332 23446666 888889999999
Q ss_pred hhcCchhhhhhhh-hHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHhhhccCCCCCCC-CccchhhHH-HHHHHH
Q 019607 67 SQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAGGEEQEP-SSISIFQLP-WLAFVV 139 (338)
Q Consensus 67 ~~~plsvVqPl~~-~~l~~~~~ls~~~l~~rl~~~~----w~gv~l~~~Gl~~l~~~~~~~~~-~~~~~~~~~-~~~~~~ 139 (338)
+...+++-.|+.. .++++..+++.+++||+.++++ +.|+.++.+|..++....+++.. .+....... ...+..
T Consensus 81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~s 160 (290)
T TIGR00776 81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMS 160 (290)
T ss_pred HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHH
Confidence 9999999999986 8899999999999999999999 78899999998777533222111 000111111 011111
Q ss_pred HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHHHHHHHHHHHHHHHH
Q 019607 140 SILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGF 219 (338)
Q Consensus 140 ~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p~~l~~~v~~~~~g~ 219 (338)
.+ ....+....+....+. ....+-...|+.++-....... . ..+.+ .-...+......+....++
T Consensus 161 g~---~y~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~~Gi~~~ia~ 225 (290)
T TIGR00776 161 TI---GYLVYVVVAKAFGVDG--------LSVLLPQAIGMVIGGIIFNLGH--I-LAKPL-KKYAILLNILPGLMWGIGN 225 (290)
T ss_pred HH---HHHHHHHHHHHcCCCc--------ceehhHHHHHHHHHHHHHHHHH--h-cccch-HHHHHHHHHHHHHHHHHHH
Confidence 11 1111122223221111 0111222223333322222111 0 00111 0011111111222235555
Q ss_pred HHHHHhhh-cCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607 220 YYQTRGLK-HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 220 ~l~q~Al~-~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 284 (338)
.+.-.+.+ .-+...++ .....||+++...|+.+|+|..+ +.......+|.++++.|+++.+-
T Consensus 226 ~~y~~~~~~~~~~~~~~-~ls~~~pvia~~~~v~~l~E~~~--~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 226 FFYLFSAQPKVGVATSF-SLSQLGVIISTLGGILILGEKKT--KREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHcccccchhhHH-HHHHHHHHHHHHHHHHHhccCCC--cceeehhHHHHHHHHHHHHHHhc
Confidence 55555666 33332322 33678999999999999999884 44455556888899998877653
No 13
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.68 E-value=2.6e-06 Score=81.43 Aligned_cols=215 Identities=14% Similarity=0.138 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccch
Q 019607 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISI 129 (338)
Q Consensus 50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~ 129 (338)
.|+. ......++..++...+.+..|=+..+..+++.+++.+++|||+++++|.|+.+..+|+.....+ +.+ . ..
T Consensus 71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~~-~---~~ 144 (302)
T TIGR00817 71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT-ELS-F---NW 144 (302)
T ss_pred HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC-ccc-c---cH
Confidence 5555 5777888999999999999999999999999999999999999999999999999999765322 111 1 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhhccCccch---hHH
Q 019607 130 FQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILF-GMASVISKLGFVFLEQGFPTM---LVP 205 (338)
Q Consensus 130 ~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~f-g~~a~l~K~~~~~~~~g~~~l---~~p 205 (338)
.-.. .++... +.........||..+..++. ...-..+....|..+ ...+..... .....+.+... ..+
T Consensus 145 ~G~~-~~l~a~---~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~~~~~~l~p~~~~~~~-~~~~~~~~~~~~~~~~~ 216 (302)
T TIGR00817 145 AGFL-SAMISN---ITFVSRNIFSKKAMTIKSLD---KTNLYAYISIMSLFLLSPPAFITEG-PPFLPHGFMQAISGVNV 216 (302)
T ss_pred HHHH-HHHHHH---HHHHHHHHHHHHhhccCCCC---cccHHHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHhhcccCc
Confidence 1110 111111 11111222333322100110 111222322222211 111111110 00000000000 010
Q ss_pred -HHHHHHHHHHHHHHH----HHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019607 206 -VCISISICCSGTGFY----YQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVV 280 (338)
Q Consensus 206 -~~l~~~v~~~~~g~~----l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv 280 (338)
..++..+..+...+. .+..+.++-++..++.. ...+|++++++|+.+|||+.... ..+|.++++.|+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~ 289 (302)
T TIGR00817 217 TKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVF 289 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHH
Confidence 011111222222222 22356666665444433 67899999999999999987443 3578889999998
Q ss_pred HHhhh
Q 019607 281 LLVSS 285 (338)
Q Consensus 281 ~l~~s 285 (338)
...+.
T Consensus 290 l~~~~ 294 (302)
T TIGR00817 290 LYSRV 294 (302)
T ss_pred HHHHH
Confidence 87654
No 14
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.63 E-value=6.9e-07 Score=74.21 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHhhcCchhhhhhhhhHH
Q 019607 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIG--FLMDIFGALLMLRALSQAPVSVIQPVSGCGL 82 (338)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G--~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l 82 (338)
.++-++|.++...|+.+-|++.+..|.... -.++.++.+ +..+...+.+...++...|+++..|+..++.
T Consensus 3 ~~~l~~ai~~ev~g~~~lK~s~~~~~~~~~--------~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~ 74 (111)
T PRK15051 3 WLTLVFASLLSVAGQLCQKQATRPVAIGKR--------RKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNF 74 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence 345567778888899999998765542110 011223333 3678889999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 83 ~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
+++.+++.+++|||++.++|.|++++..|+++++
T Consensus 75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998775
No 15
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.59 E-value=3.6e-05 Score=71.75 Aligned_cols=226 Identities=11% Similarity=0.016 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHH------HH-------------HHhh---hhhHHH----HHHHHH
Q 019607 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IR-------------AYAV---NKAWVI----GFLMDI 56 (338)
Q Consensus 4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l~-------------~llr---~p~W~~----G~~~~~ 56 (338)
++.+.++++++++...+..|.. .+.++... -.|. +. +..+ ++.|+. ...+..
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 81 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG 81 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 5778899999999999888873 33443210 0010 00 0011 122221 122255
Q ss_pred HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHH
Q 019607 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA 136 (338)
Q Consensus 57 ~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~ 136 (338)
....+.+.|+...|.+...-+..+..+++.+++.+++|||+++++|.|+.+..+|+..+..++ +. .. + ..
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-~~----~~---~--~~ 151 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-GS----LP---W--EA 151 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-CC----ch---H--HH
Confidence 667788999999999999999999999999999999999999999999999999987764211 11 01 1 12
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHHHHHHHHHHHHH
Q 019607 137 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSG 216 (338)
Q Consensus 137 ~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p~~l~~~v~~~~ 216 (338)
+..++ ....+....||.++... .....+...-..++......... ...+.......+..++...+.+.
T Consensus 152 l~aa~---~~a~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~g~~t~ 219 (256)
T TIGR00688 152 LVLAF---SFTAYGLIRKALKNTDL-------AGFCLETLSLMPVAIYYLLQTDF--ATVQQTNPFPIWLLLVLAGLITG 219 (256)
T ss_pred HHHHH---HHHHHHHHHhhcCCCCc-------chHHHHHHHHHHHHHHHHHHhcc--CcccccCchhHHHHHHHHHHHHH
Confidence 22221 12222223444332210 01111111111111111111000 00000111112222222334577
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 019607 217 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLA 253 (338)
Q Consensus 217 ~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~v 253 (338)
.++++.+++++.-++..++.. ...+|++++++|..+
T Consensus 220 i~~~l~~~a~~~~~a~~~s~~-~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 220 TPLLAFVIAANRLPLNLLGLL-QYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHHHHh
Confidence 899999999999997655543 678999999998764
No 16
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.57 E-value=6e-07 Score=76.13 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHHHH-------HHh-------------hhhhHH-HHHHHHHHH
Q 019607 1 MWELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKVIR-------AYA-------------VNKAWV-IGFLMDIFG 58 (338)
Q Consensus 1 ~~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~l~-------~ll-------------r~p~W~-~G~~~~~~G 58 (338)
|.-.+..|++||+..+...+.-|.+-+...+.-. .-|.+. -.+ |+..++ .+-+.-+++
T Consensus 1 m~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 1 MMAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 3446788999999999999999999875433210 001100 011 222232 333677888
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 59 ~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
+.+.+.|+..++.+.|-|+--.+++++..+|..+++||+|..+|+|+.++++|.+++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999999999999987653
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.56 E-value=4.8e-05 Score=70.42 Aligned_cols=209 Identities=23% Similarity=0.256 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccc
Q 019607 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS 128 (338)
Q Consensus 50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~-~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~ 128 (338)
.+......+..+...++...|.+..+++.....+++.+++. +++|||+++++|.++....+|+.++...+..+... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--~ 152 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--S 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--H
Confidence 66677778888899999999999999999999999999997 77799999999999888899998887444332210 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhccCcc-chhHH-
Q 019607 129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEII-YGLESGILFGMASVISKLGFVFLEQGFP-TMLVP- 205 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~l-lg~aaGl~fg~~a~l~K~~~~~~~~g~~-~l~~p- 205 (338)
..-. +..+...+ .........++..+... ..... +... +. +.. . ......+.+.. .....
T Consensus 153 ~~g~-~~~l~a~~---~~a~~~~~~~~~~~~~~------~~~~~~~~~~-~~--~~~---~-~~~~~~~~~~~~~~~~~~ 215 (292)
T COG0697 153 LLGL-LLALAAAL---LWALYTALVKRLSRLGP------VTLALLLQLL-LA--LLL---L-LLFFLSGFGAPILSRAWL 215 (292)
T ss_pred HHHH-HHHHHHHH---HHHHHHHHHHHhcCCCh------HHHHHHHHHH-HH--HHH---H-HHHHhccccccCCHHHHH
Confidence 0000 11111111 11112222332211100 01111 1111 00 000 0 00001111111 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607 206 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 206 ~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 284 (338)
...+..++.+..+++++.++++..+...++.. +..+|+.+..+++.++||+.+.. ...|..+++.|++....
T Consensus 216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALL-SLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH-HHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHhc
Confidence 22233344444789999999998886444432 47899999999999999987443 34566788888876653
No 18
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.52 E-value=7.1e-07 Score=73.67 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccC
Q 019607 51 GFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (338)
Q Consensus 51 G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~ 118 (338)
|......++.+...|+.+.| ..+.++..++.+|+.+++..++|||+++++|.++.++.+|++++..+
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 44555588999999999999 68899999999999999999999999999999999999999888633
No 19
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.49 E-value=3.1e-05 Score=76.03 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=65.0
Q ss_pred hhhhhHH--HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 43 AVNKAWV--IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 43 lr~p~W~--~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
+++|.|. .=-.+|+.|=-+...||.+-+++-+|=+-..+.+++.+++..++|+|.+..+|.|+.+|+.|+.++.
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~ 150 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV 150 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence 4455554 3345788888889999999999999999999999999999999999999999999999999988765
No 20
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.48 E-value=8.3e-07 Score=74.02 Aligned_cols=103 Identities=20% Similarity=0.329 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccc---hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 019607 12 TAGNNIGKVLQKKGTVILPPLSFK---LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI 87 (338)
Q Consensus 12 A~~~~~g~vlQ~~aa~~~p~~~~~---~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~~ 87 (338)
+++-+..+-+-||+++..++...+ ......+++||+++.+++++..|.+..+..|+-.|+|+..|+. +++++||++
T Consensus 5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l 84 (113)
T PF10639_consen 5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL 84 (113)
T ss_pred hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence 455677788889988764433211 2455679999999999999999999999999999999999997 999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHhh
Q 019607 88 FSHFYLKEVMNAVDWMGITLAGIGTIG 114 (338)
Q Consensus 88 ls~~~l~~rl~~~~w~gv~l~~~Gl~~ 114 (338)
.+.++.+|..+++.|+|+.+++.|+.+
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeee
Confidence 996666666688889999999998754
No 21
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.44 E-value=6.1e-05 Score=74.13 Aligned_cols=210 Identities=13% Similarity=0.112 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHH
Q 019607 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF 137 (338)
Q Consensus 58 G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~ 137 (338)
+...+..++...+++..|=+-+++.+|+++++.+++|||++++.|.++.+.+.|+.+...+ |.+ ..+....+
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~-~~~-------~~~~G~~~ 198 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK-ELH-------FTWLAFWC 198 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc-cch-------hHHHHHHH
Confidence 3445669999999999999999999999999999999999999999999999999886532 111 11211111
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhH--HHHHHHHHHHHHHHHHHHHHHHHH-H---HHhHhhhc--cCccchhHHHHHH
Q 019607 138 VVSILFVLLNGWLRICKHQRREQEMI--EFEVVEEIIYGLESGILFGMASVI-S---KLGFVFLE--QGFPTMLVPVCIS 209 (338)
Q Consensus 138 ~~~~~~v~l~~~~~~~~~~r~~~~~~--~~~~~~a~llg~aaGl~fg~~a~l-~---K~~~~~~~--~g~~~l~~p~~l~ 209 (338)
. .+..+..+....+.|+.-+..... ......-..+....|..+-+--.. . +....... +....+.....++
T Consensus 199 ~-l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (350)
T PTZ00343 199 A-MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF 277 (350)
T ss_pred H-HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH
Confidence 1 111111111222233221110000 000000111112222222211111 1 10000000 0111111112223
Q ss_pred HHHHHHHHHHHHHHH----hhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607 210 ISICCSGTGFYYQTR----GLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 210 ~~v~~~~~g~~l~q~----Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 284 (338)
. ++.+.+.++++|. .++.-++...+.. ....|++++++|+++|||+...- ..+|.++++.|+++.+.
T Consensus 278 ~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~-~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 278 K-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVA-NTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYSL 348 (350)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHhh
Confidence 3 3445556666663 6666665444433 56899999999999999987432 45788899999977653
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.16 E-value=0.00056 Score=64.35 Aligned_cols=202 Identities=20% Similarity=0.189 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCC----CCCC
Q 019607 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE----QEPS 125 (338)
Q Consensus 50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~----~~~~ 125 (338)
.=-+++.+.-.++..++...+-+.-|=+.-..+++|++++.+++|+|+++++|.++.+.+.|+..+..++.. ++..
T Consensus 22 vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~ 101 (244)
T PF04142_consen 22 VPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSS 101 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccccccc
Confidence 445678999999999999999999999999999999999999999999999999999999999887511111 1100
Q ss_pred c-----cchhhHHHHH-HHHHHHHHHHHHHH--HHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 019607 126 S-----ISIFQLPWLA-FVVSILFVLLNGWL--RICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQ 197 (338)
Q Consensus 126 ~-----~~~~~~~~~~-~~~~~~~v~l~~~~--~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~ 197 (338)
. .....+.... .......-.+.+.+ .+.|+...+ .-.+-+-+ ..-|+.+.+.....+......++
T Consensus 102 ~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s------~~~~N~qL-~~~gi~~~~~~~~~~~~~~~~~~ 174 (244)
T PF04142_consen 102 SVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVS------LWIQNMQL-YLFGILFNLLALLLSDGSAISES 174 (244)
T ss_pred ccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchh------HHHHHHHH-HHHHHHHHHHHHhcccccccccC
Confidence 0 0111111111 11111111111111 122332211 11223333 33455555555555543333344
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019607 198 GFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 260 (338)
Q Consensus 198 g~~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~ 260 (338)
|+..-++++.+.....-+..|+..-- -++.-+. +.=..++..+.++..++.+.+||.+...
T Consensus 175 g~f~G~~~~~~~~i~~~a~gGllva~-v~Kyadn-I~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 175 GFFHGYSWWVWIVIFLQAIGGLLVAF-VLKYADN-IVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred CchhhcchHHHHHHHHHHHhhHHHHH-HHHHHhH-HHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 55444555555433333344444333 5555552 3334445667788888899999887644
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.93 E-value=0.0039 Score=59.82 Aligned_cols=212 Identities=13% Similarity=0.200 Sum_probs=118.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCch--hh-hhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019607 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS--VI-QPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (338)
Q Consensus 37 ~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~pls--vV-qPl~-~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl 112 (338)
+.+++..|||+=+....+...=...|..=+-.+|-. +. ..++ -++.++..+++..++|||+++-+|+++.+..+|+
T Consensus 60 ~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV 139 (293)
T COG2962 60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV 139 (293)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 456667888876666666666566666666555543 11 1222 3456699999999999999999999999999998
Q ss_pred hhhc-cCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 019607 113 IGVG-AGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKL- 190 (338)
Q Consensus 113 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~- 190 (338)
.... ..++ ++|.++..+..+ +.+.+.|+.-. +....|++.=..-.+--.
T Consensus 140 ~~~~~~~g~-----------lpwval~la~sf----~~Ygl~RK~~~--------------v~a~~g~~lE~l~l~p~al 190 (293)
T COG2962 140 LIQTWLLGS-----------LPWVALALALSF----GLYGLLRKKLK--------------VDALTGLTLETLLLLPVAL 190 (293)
T ss_pred HHHHHHcCC-----------CcHHHHHHHHHH----HHHHHHHHhcC--------------CchHHhHHHHHHHHhHHHH
Confidence 7753 2221 234444433322 12222222211 222233322222111111
Q ss_pred hH-hhhccCc-----cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhH
Q 019607 191 GF-VFLEQGF-----PTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTA 264 (338)
Q Consensus 191 ~~-~~~~~g~-----~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~ 264 (338)
.+ ...+|.. ....+...+.+....+.+-+.+...|-++=|.. ..-.....+|..=.++++.++||+...+-
T Consensus 191 ~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls-~~G~lqYi~Ptl~fllav~i~~E~~~~~~-- 267 (293)
T COG2962 191 IYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLS-TLGFLQYIEPTLMFLLAVLIFGEPFDSDQ-- 267 (293)
T ss_pred HHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHcCCCCCHHH--
Confidence 11 1112211 111222223333334555667777677766632 22223678999999999999999996653
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 019607 265 RFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 265 ~~~~~~g~~li~~gvv~l~~ 284 (338)
...++.+-.++++.+.
T Consensus 268 ----~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 268 ----LVTFAFIWLALALFSI 283 (293)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 3556666667665554
No 24
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.82 E-value=0.00047 Score=58.20 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHH
Q 019607 6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI 84 (338)
Q Consensus 6 ~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~ 84 (338)
++=++|.++--.++...|.+... -+..+|+..+.+....+.+-..|+...|+++..|+- .++.+.
T Consensus 5 l~L~~Ai~~Ev~~t~~LK~s~g~--------------~~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~ 70 (120)
T PRK10452 5 ILLALAIATEITGTLSMKWASVS--------------EGNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILF 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC--------------CCcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 33345556666677777765311 012346788889999999999999999999999996 699999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 85 ~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
+...+.++++|+++..+|.|+.++.+|++++-
T Consensus 71 ~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 71 ITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998874
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.70 E-value=0.00077 Score=64.38 Aligned_cols=114 Identities=14% Similarity=0.169 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch-HH-------HHHHh------hhh-----hHHHHHHHHHHHHHHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KV-------IRAYA------VNK-----AWVIGFLMDIFGALLML 63 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~-------l~~ll------r~p-----~W~~G~~~~~~G~~l~~ 63 (338)
++.++++.++++++...++.||..++.++....- .. ..... .++ .++.|+...++++.++.
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999888765543321000 00 00011 111 13577888889999999
Q ss_pred HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 64 ~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
.++...|-+.+.++...+.+++.+++.++++|+++..+|+|.+++..|.+...
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887765
No 26
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.69 E-value=0.034 Score=53.43 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 47 ~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
.|+.=..++.++..++-.||.+.|...-+=.=.+.++++.+++..++|+|.+++||.++.++++|+.++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~ 135 (303)
T PF08449_consen 66 KYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT 135 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence 4555567888888999999999999887777799999999999999999999999999999999998876
No 27
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.64 E-value=0.00039 Score=55.81 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHH
Q 019607 9 LAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS 86 (338)
Q Consensus 9 l~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~-~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~ 86 (338)
+++.++...++...|... -.+++.|. ..+.+...++.+-..|+...|++++.|+. .++.+.+.
T Consensus 7 ~~a~~~ev~~~~~lK~s~---------------g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~ 71 (93)
T PF00893_consen 7 LLAILFEVVGTIALKASH---------------GFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVT 71 (93)
T ss_dssp HHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------------hhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 345556666888777732 13334444 55558889999999999999999999997 59999999
Q ss_pred HHHHHHhccccchhhHHHHHHH
Q 019607 87 IFSHFYLKEVMNAVDWMGITLA 108 (338)
Q Consensus 87 ~ls~~~l~~rl~~~~w~gv~l~ 108 (338)
+.+.+++||++|..+|.|+.++
T Consensus 72 ~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 72 LVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHH--------HHHHHHH
T ss_pred HHHHHHhCCCCCHHHHhheeeC
Confidence 9999999999999999998764
No 28
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.54 E-value=0.0016 Score=60.20 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc--cc-hHH--------HHHHhh-------hhhH--H--HHHHHHHHHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS--FK-LKV--------IRAYAV-------NKAW--V--IGFLMDIFGAL 60 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~--~~-~~~--------l~~llr-------~p~W--~--~G~~~~~~G~~ 60 (338)
.++.++++++++++...+++|+..++.++.. .. .+. ...+.. ...| . .|......++.
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYF 207 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999876544211 10 000 001111 1123 2 45555678999
Q ss_pred HHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019607 61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (338)
Q Consensus 61 l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl 112 (338)
++..++...|...+..+..++.+++.+++.++++|+++..+|.|+.++..|+
T Consensus 208 ~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 208 LWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999988875
No 29
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.49 E-value=0.0023 Score=53.16 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHH
Q 019607 6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA 83 (338)
Q Consensus 6 ~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~-W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~ 83 (338)
++=+++.++--.++...|.+. + .+++. ++..+..+++.+.+-..|+...|+++..|+- .++.+
T Consensus 5 l~L~~a~~~Ev~~~~~lK~s~------g---------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v 69 (110)
T PRK09541 5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------C---------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 344566777777887777762 1 22333 3577888999999999999999999999994 68999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 84 ~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
.+.+.+.++++|+++..++.|+.++.+|++++-
T Consensus 70 ~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999874
No 30
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.44 E-value=0.0022 Score=61.37 Aligned_cols=112 Identities=9% Similarity=0.032 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch---HH--HH-HHh-------hhh-hHH----HHHHHHHHHHHHHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL---KV--IR-AYA-------VNK-AWV----IGFLMDIFGALLMLR 64 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~---~~--l~-~ll-------r~p-~W~----~G~~~~~~G~~l~~~ 64 (338)
.+..++++|++|++.+++++||-.++.++..... .. .. ... -++ .|+ .| ...++++.++..
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~ 234 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3678999999999999999999765433211000 00 00 000 111 121 23 245667888999
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 65 AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
++...|.+.+.++.-.+.+++.+++..+++|+++..+|+|++++..|+.+.
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999998887654
No 31
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.40 E-value=0.0012 Score=62.54 Aligned_cols=111 Identities=18% Similarity=0.256 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCc----c-chH-----H---HHHHh--------hhhhH----HHHHHHHHHH
Q 019607 4 LICLTLAATAGNNIGKVLQKKGTVILPPLS----F-KLK-----V---IRAYA--------VNKAW----VIGFLMDIFG 58 (338)
Q Consensus 4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~----~-~~~-----~---l~~ll--------r~p~W----~~G~~~~~~G 58 (338)
++.+++++++|++..+++.|+...+.++.. . ... . ..... .++.| +.+......+
T Consensus 145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA 224 (281)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999888754333211 0 000 0 00000 01122 2444556778
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019607 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (338)
Q Consensus 59 ~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~ 114 (338)
+.+...+++..|.+.+.++.-.+.+++.+++.+++||+++..+|+|.+++.+|+.+
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 88899999999999999999999999999999999999999999999999999865
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.30 E-value=0.00062 Score=55.05 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
.|......++.+...++...|.+.+.++..++.+++.+++..++||+++.++|.|+.++..|+.++
T Consensus 59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 59 LGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 555556888999999999999999999999999999999999999999999999999999998764
No 33
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.27 E-value=0.0064 Score=58.19 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc-cc----hHH-------HHHHh-------------hhhh-HH----HHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK----LKV-------IRAYA-------------VNKA-WV----IGF 52 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~-~~----~~~-------l~~ll-------------r~p~-W~----~G~ 52 (338)
.+++++++++++++..+++|||-.++.++.. .. ... ...+. .++. |+ .|+
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 5889999999999999999999654322211 00 000 00000 0111 22 355
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 53 ~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
...++++.++..++...+-.-+.++..++.+++.+++.++++|+++..+|+|.+++..|+.+.
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 666788888888887777778888888888899999999999999999999999888887654
No 34
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.24 E-value=0.0058 Score=58.25 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch----H-H---HHHHh------h--h-hhHH----HHHHHHHHHHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL----K-V---IRAYA------V--N-KAWV----IGFLMDIFGALL 61 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~----~-~---l~~ll------r--~-p~W~----~G~~~~~~G~~l 61 (338)
.+..+++++++|++.+++.+||..+..+...... . . ..... . + ..|+ .|+...++++.+
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999654321100000 0 0 00000 0 1 1233 455567788899
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 62 ~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
+..++...|.+.+..+..++.+++.+++.++++|+++..+|+|+.++..|+.+..
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987764
No 35
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.24 E-value=0.13 Score=49.25 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHH----HHHHHHHHHhhhccCCCCCCC-Ccc
Q 019607 54 MDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVGAGGEEQEP-SSI 127 (338)
Q Consensus 54 ~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~~ls~~~l~~rl~~~~w~----gv~l~~~Gl~~l~~~~~~~~~-~~~ 127 (338)
+-.+|-..|+.++...-+|..-|+. ...|+.+.+.+.++++|.-+.++|+ +++++++|..+-+..+++.+. ++.
T Consensus 54 ~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~ 133 (269)
T PF06800_consen 54 FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSK 133 (269)
T ss_pred HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 4567888899999999999999996 8899999999999999999998885 455556666554422222111 111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc--CccchhHH
Q 019607 128 SIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQ--GFPTMLVP 205 (338)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~--g~~~l~~p 205 (338)
....-....++..- +....+..+.+-..-.. -+.++--+-|+..+..-..... .....+ .+..+.+-
T Consensus 134 ~~~~kgi~~Ll~st--igy~~Y~~~~~~~~~~~--------~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k~~~~nil~G 202 (269)
T PF06800_consen 134 SNMKKGILALLIST--IGYWIYSVIPKAFHVSG--------WSAFLPQAIGMLIGAFIFNLFS-KKPFFEKKSWKNILTG 202 (269)
T ss_pred cchhhHHHHHHHHH--HHHHHHHHHHHhcCCCh--------hHhHHHHHHHHHHHHHHHhhcc-cccccccchHHhhHHH
Confidence 22221111111111 01111112222111110 1344444555544422222211 000001 11111221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 019607 206 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL 281 (338)
Q Consensus 206 ~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~ 281 (338)
..+. .+-+.+++... +.|-+. +.+..=.+.+++.+.|+.+|+|+... ........|.++++.|.++
T Consensus 203 ~~w~----ignl~~~is~~--~~G~a~--af~lSQ~~vvIStlgGI~il~E~Kt~--ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 203 LIWG----IGNLFYLISAQ--KNGVAT--AFTLSQLGVVISTLGGIFILKEKKTK--KEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHH----HHHHHHHHhHH--hccchh--hhhHHhHHHHHHHhhhheEEEecCch--hhHHHHHHHHHHHHHhhhc
Confidence 1111 22334444443 555432 11113346899999999999998633 3345456788877777653
No 36
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.16 E-value=0.0088 Score=49.69 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHH
Q 019607 6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA 83 (338)
Q Consensus 6 ~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~-~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~ 83 (338)
..=++|.++=-.++...|+.. -.++|.|. .-.......+.+...|+...|+++..++- ..+.+
T Consensus 10 ~~L~~Ai~~Ev~~t~~Lk~s~---------------gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v 74 (109)
T PRK10650 10 AWLALAIVLEIVANIFLKFSD---------------GFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIA 74 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 333445555555666666541 13344443 44556677888889999999999999995 68999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 84 ~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
.+.+.+.++++|+++..+|.|+.++..|++++
T Consensus 75 ~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 75 ATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998775
No 37
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.11 E-value=0.0064 Score=60.34 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc-cc--h-------HHHHHHh--hh--hhHH-------HHHH----HHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK--L-------KVIRAYA--VN--KAWV-------IGFL----MDIF 57 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~-~~--~-------~~l~~ll--r~--p~W~-------~G~~----~~~~ 57 (338)
++.++++.|++|+++.+++|||-.++-|+.. .. . -.+..+. ++ +.|+ ..++ ...+
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l 268 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV 268 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence 4788999999999999999999877655421 00 0 0001112 11 1121 1122 1234
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 58 G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
++.++..++...+-+.+-...-+..+|+++++..+++|+++..+++|.+++..|+....
T Consensus 269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888999999999999999999999999999999997764
No 38
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.11 E-value=0.0016 Score=55.50 Aligned_cols=69 Identities=33% Similarity=0.448 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607 209 SISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 209 ~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 284 (338)
....+.+.+++++.-+|+|.|++..+. |-.=.+|+..+.+++++|||+.... ..+|..++++|+++++.
T Consensus 71 ilSGla~glswl~Yf~ALk~G~as~Vv-Pldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 71 ILSGLAGGLSWLLYFRALKKGKASRVV-PLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVSL 139 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcceEE-EcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEec
Confidence 344456677888888999999964333 3345689999999999999998553 34788999999887653
No 39
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.09 E-value=0.0087 Score=49.35 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 48 W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
+..-+......|.+...|+...|+++..++- ..+.+.+.+.+.+++||+++..+|.|+.++..|++++
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 4466778888899999999999999999995 6999999999999999999999999999999999876
No 40
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0098 Score=49.16 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 46 KAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 46 p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl-~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
.+.+.....+.+.|.+...|+...|+.+..++ ...+.+.+...+..+++|+++..+|+|+.++..|++++
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 33446778889999999999999999999999 58999999999999999999999999999999998876
No 41
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.91 E-value=0.032 Score=46.20 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607 213 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS 285 (338)
Q Consensus 213 ~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s 285 (338)
++....+++...++|.-|...+-...+ ..++...++|..+|||+.+.. ..+|..++++|++.++.+
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~~~ 110 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILGST 110 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcc
Confidence 344567888888999988544433324 788999999999999998443 457889999999888754
No 42
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.77 E-value=0.3 Score=46.44 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=85.9
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHH
Q 019607 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSI 141 (338)
Q Consensus 62 ~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (338)
...++...|+.+.-.+=-.+.+.-+.++ .|| .+|.+++++.+.|+.++...++...+.++ .-.. +++..
T Consensus 88 FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp--~Gv~-~Al~A-- 156 (292)
T COG5006 88 FYLSIERIPLGIAVAIEFTGPLAVALLS----SRR--LRDFVWVALAVLGIWLLLPLGQSVWSLDP--VGVA-LALGA-- 156 (292)
T ss_pred HHHHHHhccchhhhhhhhccHHHHHHHh----ccc--hhhHHHHHHHHHHHHhheeccCCcCcCCH--HHHH-HHHHH--
Confidence 4678888899887766333333322222 233 35655666677777666533333222111 1111 11211
Q ss_pred HHHHHHHHHHHhhccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHH----HHHHHHHHHHH
Q 019607 142 LFVLLNGWLRICKHQR-REQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVP----VCISISICCSG 216 (338)
Q Consensus 142 ~~v~l~~~~~~~~~~r-~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p----~~l~~~v~~~~ 216 (338)
.++++.|-...+|.. ..+. .+ |++.|...+...++- ++. .|.-..+++| ..+.+.++.++
T Consensus 157 -G~~Wa~YIv~G~r~g~~~~g------~~----g~a~gm~vAaviv~P-ig~---~~ag~~l~~p~ll~laLgvavlSSa 221 (292)
T COG5006 157 -GACWALYIVLGQRAGRAEHG------TA----GVAVGMLVAALIVLP-IGA---AQAGPALFSPSLLPLALGVAVLSSA 221 (292)
T ss_pred -hHHHHHHHHHcchhcccCCC------ch----HHHHHHHHHHHHHhh-hhh---hhcchhhcChHHHHHHHHHHHHhcc
Confidence 223444444444433 2221 11 222222222111110 111 1222234444 33444455556
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019607 217 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 260 (338)
Q Consensus 217 ~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~ 260 (338)
+=|-+.|.++++=+.-.-++- .-.||..+.+.|.++|||+...
T Consensus 222 lPYsLEmiAL~rlp~~~F~~L-lSLePa~aAl~G~i~L~e~ls~ 264 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTL-LSLEPALAALSGLIFLGETLTL 264 (292)
T ss_pred cchHHHHHHHhhCChhHHHHH-HHhhHHHHHHHHHHHhcCCCCH
Confidence 668899999998874332222 4579999999999999999844
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.50 E-value=0.042 Score=52.53 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCcc------ch-HHHH--H--------Hhhhhh-HHH----HHHHHHHHHHHHHH
Q 019607 7 LTLAATAGNNIGKVLQKKGTVILPPLSF------KL-KVIR--A--------YAVNKA-WVI----GFLMDIFGALLMLR 64 (338)
Q Consensus 7 lAl~aA~~~~~g~vlQ~~aa~~~p~~~~------~~-~~l~--~--------llr~p~-W~~----G~~~~~~G~~l~~~ 64 (338)
+.++++++++...+++||...+...... .+ .... . ...+|. |+. +.....+++.+...
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~ 232 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999997432211100 00 0000 0 001122 111 11134477888999
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 65 AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
+++..|-+.+.++.-++.+++.+++.++++|+++..+|.|++++..|+.++
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987666554
No 44
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.39 E-value=0.043 Score=50.57 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch-------HHH--HHHh---------hhhhHH--HHHHHHHHHHHH
Q 019607 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KVI--RAYA---------VNKAWV--IGFLMDIFGALL 61 (338)
Q Consensus 2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-------~~l--~~ll---------r~p~W~--~G~~~~~~G~~l 61 (338)
+.++.++++++++++...+++++-. +.+...... ..+ .... +...++ .|+...+.++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999866 322211100 000 0001 111112 344444457888
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 62 ~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
...++...+...+.++.....+++..++..+++|+++..+|.|++++..|.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999988888877654
No 45
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.18 E-value=0.02 Score=54.71 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHH---------Hhhhh--------hHH-HHHHHHHHHHHHHHHHH
Q 019607 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRA---------YAVNK--------AWV-IGFLMDIFGALLMLRAL 66 (338)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~---------llr~p--------~W~-~G~~~~~~G~~l~~~AL 66 (338)
+++.-++ ..++...++-++.....|..-...+.+.+ |.++| .|+ +=-.+-..|..++.-||
T Consensus 40 l~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~ 118 (346)
T KOG4510|consen 40 LLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYAL 118 (346)
T ss_pred ceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHH
Confidence 3445555 77777788777776544432111122211 11222 233 11223456777788888
Q ss_pred hhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 67 SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 67 ~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
...|++=..=+.-.+.+|+.+++..+||||.+..|-++......|++++.
T Consensus 119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred hhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 88887765556677888999999999999999999999999999998875
No 46
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.92 E-value=2 Score=42.60 Aligned_cols=114 Identities=18% Similarity=0.073 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCC----------------C---CccchHHHHHHhhh---hhHHHHH---HHHH
Q 019607 2 WELICLTLAATAGNNIGKVLQKKGTVILP----------------P---LSFKLKVIRAYAVN---KAWVIGF---LMDI 56 (338)
Q Consensus 2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p----------------~---~~~~~~~l~~llr~---p~W~~G~---~~~~ 56 (338)
.+++...+++++|++-=.+-||+. +.=+ + .....+....++++ .-|..++ .+-.
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W~ 84 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALWG 84 (345)
T ss_pred HHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 568999999999999888899883 2211 0 00011222334442 3344443 3556
Q ss_pred HHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhcccc---chhhH----HHHHHHHHHHhhhc
Q 019607 57 FGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM---NAVDW----MGITLAGIGTIGVG 116 (338)
Q Consensus 57 ~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~~ls~~~l~~rl---~~~~w----~gv~l~~~Gl~~l~ 116 (338)
+|-..|..+.+..-+|+-+|+. ...++++.++...+++|-- +..++ +|++++++|+.+.+
T Consensus 85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s 152 (345)
T PRK13499 85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG 152 (345)
T ss_pred hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999994 8899999999999999654 44443 57888888887765
No 47
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.41 E-value=0.28 Score=46.66 Aligned_cols=114 Identities=14% Similarity=0.184 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-ccchHHH--------------HHHhhhhhHH-HHHHHHH----HHHHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVI--------------RAYAVNKAWV-IGFLMDI----FGALLM 62 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~-~~~~~~l--------------~~llr~p~W~-~G~~~~~----~G~~l~ 62 (338)
.++.+|+.+..|.+.=-+.-||+.+..++. +...+.. ..-+.+|.=+ .++...+ +=|.++
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHH
Confidence 468889999999888888888887644322 1111111 0122233322 4444443 345679
Q ss_pred HHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 63 LRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 63 ~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
.+||+-.|-.----++++...+++..+..++||++|..||.++.+++.+..+..
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999988887654
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.16 E-value=0.24 Score=47.43 Aligned_cols=112 Identities=22% Similarity=0.166 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc----ch-----HHH--HHH-----hhhhhHH----HHHHHHHHHHHH
Q 019607 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----KL-----KVI--RAY-----AVNKAWV----IGFLMDIFGALL 61 (338)
Q Consensus 2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~----~~-----~~l--~~l-----lr~p~W~----~G~~~~~~G~~l 61 (338)
..++..+++|+++|+.-.+.=|+.. .++.+. .- ..+ ..+ ..++.+| .|+. -.+++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 4588999999999988877766542 222211 00 000 011 0111222 4555 5777888
Q ss_pred HHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHhhhc
Q 019607 62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGVG 116 (338)
Q Consensus 62 ~~~AL~-~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w----~gv~l~~~Gl~~l~ 116 (338)
.+.++. ..+.+..-++...+.+++.+++.+++||+.+++|+ +|++++..|..+++
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 888888 88999999999999999999999999999999999 99999888876653
No 49
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=94.78 E-value=0.31 Score=39.85 Aligned_cols=62 Identities=29% Similarity=0.343 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607 216 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS 285 (338)
Q Consensus 216 ~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s 285 (338)
..++.++..|++..+. .++ +..-.+|++..++|..+|+|+.+.. ...+.+++.+|++++...
T Consensus 46 ~~~~~~~~~a~~~~~~-~v~-~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 46 GVAYLLFFYALSYAPA-LVA-AIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHHHHHHHHHHhCcH-HHH-HHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence 4667888889998884 333 4456799999999999999988554 246778899999888754
No 50
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=94.77 E-value=0.7 Score=39.38 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHH--HHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607 208 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGM--LALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS 285 (338)
Q Consensus 208 l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv--~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s 285 (338)
.+..+++..++++++..++++.+...+. |.....+....+.+. .+|||+.+.. ..+|.+++++|++.+.++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ay-p~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAY-PLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhccC
Confidence 3455667889999999999998854433 222233444444454 4899988332 467999999999988753
No 51
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=94.28 E-value=0.09 Score=50.65 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhhhcCCCCccch--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH
Q 019607 13 AGNNIGKVLQKKGTVILPPLSFKL--KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH 90 (338)
Q Consensus 13 ~~~~~g~vlQ~~aa~~~p~~~~~~--~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~ 90 (338)
+|.++=.++..|+.++-...+++. .....-++...++.=.++|+.|-.++.+.|-+-..+--|=+=..-++|+.+++.
T Consensus 52 lCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst 131 (372)
T KOG3912|consen 52 LCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFST 131 (372)
T ss_pred HHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHH
Confidence 567777778777766532221110 000112444456777899999999999999999999999999999999999999
Q ss_pred HHhccccchhhHHHHHHHHHHHhhhc
Q 019607 91 FYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 91 ~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
-+++++++.++|.|+..+..|++.++
T Consensus 132 ~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 132 MFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred HHHhcccchhhHHHHHHHHhhhheee
Confidence 99999999999999999999998876
No 52
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=93.86 E-value=0.25 Score=39.51 Aligned_cols=65 Identities=32% Similarity=0.386 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607 212 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 283 (338)
Q Consensus 212 v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 283 (338)
++.+..++.+.+++++..+...++. ....+|+.+.++|..+++|+.+. . ...|..+++.|++.+.
T Consensus 61 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~pv~~~i~~~~~~~e~~~~--~----~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 61 LLGTALAYLLYFYALKYISASIVSI-LQYLSPVFAAILGWLFLGERPSW--R----QIIGIILIIIGVVLIS 125 (126)
T ss_pred ccceehHHHHHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHHcCCCCCH--H----HHHHHHHHHHHHHHHH
Confidence 3345778889999999988655443 35689999999999999998733 2 3567778888887653
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=93.22 E-value=0.96 Score=43.09 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCccch-----HH----HHHHhh-----------h--------hhHHHH
Q 019607 2 WELICLTLAATAGNNIGKVLQKKGTV--ILPPLSFKL-----KV----IRAYAV-----------N--------KAWVIG 51 (338)
Q Consensus 2 ~~av~lAl~aA~~~~~g~vlQ~~aa~--~~p~~~~~~-----~~----l~~llr-----------~--------p~W~~G 51 (338)
+.+.+++++|+++++..++++||..+ +.++..... .. ...... + ..|..+
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 35788999999999999999998765 322211000 00 000000 0 012112
Q ss_pred HHHHHHHH----HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 52 FLMDIFGA----LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 52 ~~~~~~G~----~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
.......+ .+.+.++...+-+-..-......+++.+++..+++|+++..++.|.+++..|+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 11111111 233345655566666666667777999999999999999999999999999987764
No 54
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=93.05 E-value=10 Score=37.65 Aligned_cols=64 Identities=23% Similarity=0.271 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 53 ~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
.++.+=--+|.++++..|-+.-|...-.-..-|++++..+|+||+++++|.+..+...|+..+-
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3555555589999999999999999999999999999999999999999999999999988864
No 55
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=92.59 E-value=5.2 Score=33.13 Aligned_cols=65 Identities=23% Similarity=0.306 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607 212 ICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 212 v~~~~~g~~l~q~Al~~G~~~~~s~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 284 (338)
+++-.+.|++..+++++=|..+ ..+ +-...+...++|+.+|||+... . ...|..+++.|++.+-.
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~i--AYavw~GlG~v~~~l~g~~~f~e~~~~--~----~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGI--AYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhc
Confidence 3455678888888999877321 222 3345566689999999998833 2 45788999999988843
No 56
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=92.05 E-value=4.5 Score=33.51 Aligned_cols=77 Identities=31% Similarity=0.423 Sum_probs=50.1
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHH
Q 019607 197 QGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLL 274 (338)
Q Consensus 197 ~g~~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~l 274 (338)
||+....... ..+++-...|++...++++=|.- ..++ +-.-.+..+++|+.+|||+. ++. ..+|..+
T Consensus 25 ~gf~~~~~~i---l~~v~~~~sf~~Ls~alk~ipvg--vAYAiW~GiG~v~~~l~g~~~f~E~l--~~~----~~~gl~L 93 (106)
T COG2076 25 DGFTRLWPSI---LTIVGYGLSFYLLSLALKTIPLG--VAYAIWTGIGIVGTALVGVLLFGESL--SLI----KLLGLAL 93 (106)
T ss_pred hcccccchHH---HHHHHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHHHHHHHHhcCCcC--CHH----HHHHHHH
Confidence 5665444332 22334456788888899986621 2233 44455566889999999988 433 3568889
Q ss_pred HHHHHHHHhh
Q 019607 275 IMIGVVLLVS 284 (338)
Q Consensus 275 i~~gvv~l~~ 284 (338)
+++|++.+-.
T Consensus 94 iiaGvi~Lk~ 103 (106)
T COG2076 94 ILAGVIGLKL 103 (106)
T ss_pred HHHHHHHhhh
Confidence 9999987743
No 57
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=90.97 E-value=0.93 Score=37.62 Aligned_cols=98 Identities=24% Similarity=0.366 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhhhc---CCCCcc----chHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHH
Q 019607 15 NNIGKVLQKKGTVI---LPPLSF----KLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS 86 (338)
Q Consensus 15 ~~~g~vlQ~~aa~~---~p~~~~----~~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~ 86 (338)
.+.-+-+-||+... +.+.+. -.+.++.++.++.++.=++++-.|..+.+.-|+-.|+++.-|+- +++..|++
T Consensus 15 WG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta 94 (125)
T KOG4831|consen 15 WGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTA 94 (125)
T ss_pred HccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHH
Confidence 34555666776642 222111 12356778899999999999999999999999999999999995 88999999
Q ss_pred HHHHHHhccccch-hhHHHHHHHHHHHh
Q 019607 87 IFSHFYLKEVMNA-VDWMGITLAGIGTI 113 (338)
Q Consensus 87 ~ls~~~l~~rl~~-~~w~gv~l~~~Gl~ 113 (338)
.++ ..++|+... +...|..+++.|+.
T Consensus 95 ~~G-~~LGE~~~g~~a~lGt~liv~Gi~ 121 (125)
T KOG4831|consen 95 IFG-KALGEETQGGLALLGTSLIVFGIW 121 (125)
T ss_pred HHH-HHhccccccceeehhhhHHhhhhh
Confidence 988 566777765 55568888888864
No 58
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=90.69 E-value=6.1 Score=32.78 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019607 211 SICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 282 (338)
Q Consensus 211 ~v~~~~~g~~l~q~Al~~G~~~~~s~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l 282 (338)
.++.....|++..+++|+=|.- ...+ +-...+...++|+.+|||+. ++. ...|..+++.|++.+
T Consensus 41 ~~~~~~~sf~~Ls~al~~lpvg--vAYAvW~GiG~v~~~~ig~~~f~e~~--~~~----~~~gi~lIi~GVi~l 106 (109)
T PRK10650 41 SLAAVLAAFSALSQAVKGIDLS--VAYALWGGFGIAATLAAGWILFGQRL--NRK----GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHh
Confidence 3445567888888899976621 1222 33445566889999999988 432 457888999999876
No 59
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=90.19 E-value=8.5 Score=34.91 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019607 214 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 260 (338)
Q Consensus 214 ~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~ 260 (338)
...+|-.+-.--++..+.... ...+..+++...++++.+|||+...
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~-~~~~~~~~~~s~lls~~~f~~~ls~ 206 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTK-SFVTALSIILSTLASVRLFDAKISS 206 (222)
T ss_pred HHHhcCceeeehhHHhHHHHH-HHHHHHHHHHHHHHHHHHhcCCccH
Confidence 333443333334444443322 2336789999999999999998743
No 60
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=90.07 E-value=3.1 Score=41.10 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc--chH---HH----------HHHhhhhhHHHHHHHHHHHHHH-HHHH
Q 019607 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF--KLK---VI----------RAYAVNKAWVIGFLMDIFGALL-MLRA 65 (338)
Q Consensus 2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~--~~~---~l----------~~llr~p~W~~G~~~~~~G~~l-~~~A 65 (338)
.++-+++++||.+||+.+++|++-.++.|.... ..+ .+ +.-+++-.|-.......+|+.+ ++.-
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence 356789999999999999999999877553210 000 00 0112222343333444455443 5555
Q ss_pred HhhcCchh-------hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 66 LSQAPVSV-------IQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 66 L~~~plsv-------VqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
+.+.|+.+ +.-=+-++-+.+++...++.|++++...++|.+++.+|.++..
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 55555533 2222345667788999999999999999999999999998875
No 61
>PRK11431 multidrug efflux system protein; Provisional
Probab=90.06 E-value=5.9 Score=32.61 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607 212 ICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 283 (338)
Q Consensus 212 v~~~~~g~~l~q~Al~~G~~~~~s~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 283 (338)
+++-...|++..+++|.=|.- ...+ +-...+...++|+.+|||+. ++. ..+|..+++.|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~g--vaYAvW~GiG~v~~~lig~~~f~e~~--~~~----~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVG--TAYAVWTGIGAVGAAITGIVLLGESA--SPA----RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcH--hHHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHhhh
Confidence 445567888888899976621 1222 44455666899999999988 433 3568889999998873
No 62
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=87.23 E-value=14 Score=30.99 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCC--CCccchH----------------------------HHHHHhh-----h-hh
Q 019607 4 LICLTLAATAGNNIGKVLQKKGTVILP--PLSFKLK----------------------------VIRAYAV-----N-KA 47 (338)
Q Consensus 4 av~lAl~aA~~~~~g~vlQ~~aa~~~p--~~~~~~~----------------------------~l~~llr-----~-p~ 47 (338)
+..+++.|.++.+.=.+++|+.-++.. ....++- ......+ . ..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 357889999999999988888776530 0000000 0001111 2 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019607 48 WVIGFLMDIFGALLMLRALSQA---PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (338)
Q Consensus 48 W~~G~~~~~~G~~l~~~AL~~~---plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~ 114 (338)
|+.-+..-..++..|...+... .-.--+=+...--+++.+++..+++|+++..++.|+.++..|...
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 3333344445556655544322 222223334567788999999999999999999999999998764
No 63
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=85.62 E-value=21 Score=30.13 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607 212 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 283 (338)
Q Consensus 212 v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 283 (338)
+++-.+.|++..++++.=|..++=..-+-...+...++|+.+|||+.... ..+|..+++.|++.+-
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 44556788988989987763221111123345555889999999988432 4578889999998874
No 64
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=84.68 E-value=9.1 Score=38.50 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=62.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH---HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccC
Q 019607 42 YAVNKAWVIGFLMDIFGALLML---RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (338)
Q Consensus 42 llr~p~W~~G~~~~~~G~~l~~---~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~ 118 (338)
+.++..=-.++..-.+.|+.|. .||++-.++-..=+-..+=.|++.++..+..||++..+.+++.+...|++.+..+
T Consensus 153 ~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765|consen 153 LTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence 3333444456666666666654 4777777777777788899999999999999999999999999999999998755
Q ss_pred CCCC
Q 019607 119 GEEQ 122 (338)
Q Consensus 119 ~~~~ 122 (338)
+.++
T Consensus 233 ~s~~ 236 (416)
T KOG2765|consen 233 DSKQ 236 (416)
T ss_pred cccc
Confidence 4433
No 65
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=83.89 E-value=24 Score=34.73 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 79 ~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
...-++..+++..+++|+++..+++|.+++..|+...
T Consensus 310 ~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 310 TLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 3455688899999999999999999999999998764
No 66
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=80.86 E-value=7.9 Score=35.11 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHH-----------HHH-------Hh-------h-hhhHHHHHHHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKV-----------IRA-------YA-------V-NKAWVIGFLMDI 56 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~-----------l~~-------ll-------r-~p~W~~G~~~~~ 56 (338)
.++...+.+..+.+...+.|++.-++.+. ....+. ... .. . .+.+|.-..+..
T Consensus 85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (222)
T TIGR00803 85 VGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV 163 (222)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence 34555566677778999999998654221 100000 000 00 0 122333334444
Q ss_pred HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q 019607 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (338)
Q Consensus 57 ~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~ 113 (338)
.|..+-...+...+-...-=+..++.+++.+++.++++++++...|.|+.++..|+.
T Consensus 164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 554454444555555566666788999999999999999999999999998877653
No 67
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=79.90 E-value=16 Score=30.27 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccC
Q 019607 51 GFLMDIFGALLMLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (338)
Q Consensus 51 G~~~~~~G~~l~~~AL~-~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~ 118 (338)
...+...|+++-+..-. ++-+.- .-+..=...++....+..+.|+++.||+|...|.+|..++.-+
T Consensus 39 ~~sL~lf~~llT~~~~~a~GRvYA--AYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 39 ALSLALFGWLLTLQPAAAFGRVYA--AYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHHcCCchhhhhHHH--HhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 44566666666433221 222211 1122233456667788899999999999999998887665433
No 68
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=78.50 E-value=27 Score=27.67 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 019607 212 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (338)
Q Consensus 212 v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~ 261 (338)
+++-...+++..+++|+-|..++=...+-...+.-.++|+.+|||+....
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~ 85 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS 85 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33556788888999999884332222234456667889999999998543
No 69
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=73.68 E-value=26 Score=34.04 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcc--------CccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHH
Q 019607 170 EIIYGLESGILFGMASVISKLGFVFLEQ--------GFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVA 241 (338)
Q Consensus 170 a~llg~aaGl~fg~~a~l~K~~~~~~~~--------g~~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva 241 (338)
++.+++.+.++.+....+-|-.....++ +...+-+|. |+........|-..+-.||.-.|... .+|....
T Consensus 8 Gv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~-W~~G~~~~~~g~~~~~~Al~~ap~sl-v~Plg~~ 85 (300)
T PF05653_consen 8 GVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPL-WWIGLLLMVLGEILNFVALGFAPASL-VAPLGAL 85 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHH-HHHHHHHHhcchHHHHHHHHhhhHHH-HHHHHhh
Confidence 4666777777777777777765432221 112233332 23333444566666667888777432 3344445
Q ss_pred HHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607 242 SIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 283 (338)
Q Consensus 242 ~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 283 (338)
+-+...+++-.+++|+.+... ..|..+++.|.+++.
T Consensus 86 ~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 86 SLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIV 121 (300)
T ss_pred hhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeE
Confidence 566678889999999986542 467777888876654
No 70
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=72.58 E-value=20 Score=34.82 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=43.3
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Q 019607 219 FYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRW 294 (338)
Q Consensus 219 ~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~~l~~~~p~ 294 (338)
+++.--|-.+|+.+-+|.- ...+|++-+++|.++|+|+.+.- .|++++.+.+.+.......++.|.
T Consensus 86 W~lfiWAvn~g~~leaSLG-Y~InPL~~VllG~lflkErls~~---------Q~iAV~lA~~GV~~~~~~~g~lpw 151 (293)
T COG2962 86 WWLFIWAVNNGHVLEASLG-YFINPLVNVLLGRLFLKERLSRL---------QWIAVGLAAAGVLIQTWLLGSLPW 151 (293)
T ss_pred HHHhheecCCCchhHHHhH-HHHHHHHHHHHHHHHHHhhccHH---------HHHHHHHHHHHHHHHHHHcCCCcH
Confidence 4455557778886655533 67899999999999999998542 333444444444444555666665
No 71
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.32 E-value=10 Score=31.13 Aligned_cols=62 Identities=26% Similarity=0.186 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhhcC-------chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019607 51 GFLMDIFGALLMLRALSQAP-------VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (338)
Q Consensus 51 G~~~~~~G~~l~~~AL~~~p-------lsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~ 114 (338)
..+....-+.+|+=|=+.+. +-..|- ++++.+-.++|.+++||+++...|.|..++..++..
T Consensus 44 SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 44 SWGIAFFEYLLQVPANRIGHQVYSAAQLKTMQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HhhHHHHHHHHhCccchhhhhhccHHHHHHHHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 33445566677776655553 333444 468899999999999999999999888777666543
No 72
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=68.18 E-value=80 Score=30.09 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-------------------c--hH----HHHHHhhhhh-HHHHHHHHH
Q 019607 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-------------------K--LK----VIRAYAVNKA-WVIGFLMDI 56 (338)
Q Consensus 3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-------------------~--~~----~l~~llr~p~-W~~G~~~~~ 56 (338)
.++.+.+++-++.+.-.+.|+|--++-+.... . .+ ...-..++|. |+.-+....
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 37889999999999999999998864321110 0 00 0111223444 334445555
Q ss_pred HHHHHHHHHHh----hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607 57 FGALLMLRALS----QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (338)
Q Consensus 57 ~G~~l~~~AL~----~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l 115 (338)
.|+..|..-.. ++|+... =+..+.=.++.++|..+.+++++..+|.|+.++..|+..-
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t-~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTT-IVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhh-hHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 66666543332 2333222 2334467788899999999999999999999988887653
No 73
>PRK02237 hypothetical protein; Provisional
Probab=65.92 E-value=11 Score=31.32 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 81 ~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
=.+.++.....+.+.|+++.||+|.++|.+|..++.
T Consensus 69 yI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 69 YVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 344566788899999999999999999999986653
No 74
>COG4944 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.88 E-value=1.1e+02 Score=28.09 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh---------hcCchhhhhhhhhHHHHHHHHHHHHhccccc--hhhH--HHHHHHHHHHh
Q 019607 47 AWVIGFLMDIFGALLMLRALS---------QAPVSVIQPVSGCGLAILSIFSHFYLKEVMN--AVDW--MGITLAGIGTI 113 (338)
Q Consensus 47 ~W~~G~~~~~~G~~l~~~AL~---------~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~--~~~w--~gv~l~~~Gl~ 113 (338)
+|.......+++..+++.=|. ..|-+.+.-+-..-+..+...+.+-+.++-+ ++.| ..++..+.++.
T Consensus 26 l~~aA~~a~v~a~~l~l~~Lg~RpDl~~Am~tp~Fw~K~vy~~lLa~t~~~av~aLSrP~~~~~~~~~~lavif~~~ava 105 (213)
T COG4944 26 LAGAALLAIVLALLLMLLILGPRPDLSDAMTTPRFWVKSVYAALLALTAFLAVRALSRPGGSRRRLWAWLAVIFVAMAVA 105 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHH
Confidence 344556666666666654443 4478888888888888888888888877753 2334 44555556665
Q ss_pred hhc---cCCCCCCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019607 114 GVG---AGGEEQEPS-SISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISK 189 (338)
Q Consensus 114 ~l~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K 189 (338)
.+. ..++.+-.. -.+........++..+.+--+...+ ..-|...+. |..+-|.++|+.-|-.++..-
T Consensus 106 ~l~ql~~~p~~~~~~~llG~s~lvC~~~I~liglp~lal~l-~aLR~~Apa--------rP~lAGfaaGL~aGgi~a~~Y 176 (213)
T COG4944 106 ALYQLIFAPPGTWRTRLLGSSALVCPFLIPLIGLPPLALLL-LALRYGAPA--------RPTLAGFAAGLAAGGIGATVY 176 (213)
T ss_pred HHHHHHhcChhhHhHHHhccchhhhhHHHHHhchHHHHHHH-HHHhcCCCC--------CchHHHHHHHHhcccHHHHhh
Confidence 554 222221110 0111111111111111111111111 122332222 356778888887765544332
Q ss_pred HhHhhhccCccchhHHHHHHHHHHHHHHH
Q 019607 190 LGFVFLEQGFPTMLVPVCISISICCSGTG 218 (338)
Q Consensus 190 ~~~~~~~~g~~~l~~p~~l~~~v~~~~~g 218 (338)
.. .-.|||+....++|.+.+ .+.+++|
T Consensus 177 a~-hC~e~~~~Fva~WYtlgi-~~lgviG 203 (213)
T COG4944 177 AW-HCTEDGPLFVATWYTLGI-LLLGVIG 203 (213)
T ss_pred hh-cCCCCccHHHHHHHHHHH-HHHHHHH
Confidence 21 123678877788877644 2345555
No 75
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=64.75 E-value=11 Score=31.28 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 80 CGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 80 ~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
.=.+.+++...++.++|+++.||+|.++|.+|..++.
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 3445677788899999999999999999999987754
No 76
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=62.15 E-value=40 Score=28.21 Aligned_cols=61 Identities=26% Similarity=0.257 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 019607 215 SGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL 281 (338)
Q Consensus 215 ~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~ 281 (338)
-..|-...-..+.+-+...+...++...-+..++.| .++||+..... ...|..+++.|+.+
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g-~~lge~~~~~~-----~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTG-WLLGEEVISRR-----TWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHH-HHhcCcccchh-----HHHHHHHHHcCeee
Confidence 345544444456666633333222333334445556 56677664321 14678888888754
No 77
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=56.68 E-value=89 Score=28.71 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607 217 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 283 (338)
Q Consensus 217 ~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 283 (338)
..+.+.-.++|..+...++ ......|+...+++..+++|+.+..- .++..+.+.|++.+.
T Consensus 82 ~~~~~~~~a~~~~~~~~a~-~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVS-LGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHcchHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHH
Confidence 4455566678876643322 22456899999999999999985432 345555566666553
No 78
>PF06532 DUF1109: Protein of unknown function (DUF1109); InterPro: IPR009495 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.30 E-value=1.7e+02 Score=26.61 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.1
Q ss_pred cCchhhhhhhhhHHHHHHHHHHHHhcccc
Q 019607 69 APVSVIQPVSGCGLAILSIFSHFYLKEVM 97 (338)
Q Consensus 69 ~plsvVqPl~~~~l~~~~~ls~~~l~~rl 97 (338)
-|.+.++......+......+.+-+.++=
T Consensus 48 ~p~f~~k~~~~~~la~~a~~a~~~l~rPg 76 (204)
T PF06532_consen 48 TPRFWIKFAFALALAVAAAWAAFRLSRPG 76 (204)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 37777777777788888888888887766
No 79
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=53.31 E-value=37 Score=28.80 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Q 019607 247 VVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRW 294 (338)
Q Consensus 247 v~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~~l~~~~p~ 294 (338)
+.+|.+.+++ .......|+.++..|++-+.-...-.+.+|+
T Consensus 75 if~G~l~~~~-------~~~~~i~g~~~~~~G~~~i~l~~~~~~~~~~ 115 (136)
T PF08507_consen 75 IFLGTLCLGQ-------SILSIIIGLLLFLVGVIYIILGFFCPIKEPE 115 (136)
T ss_pred HHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 3455566666 2344456777888887766544333333454
No 80
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=51.91 E-value=1.8e+02 Score=27.92 Aligned_cols=65 Identities=23% Similarity=0.235 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhcCCchhHHHHH-HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607 217 TGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 217 ~g~~l~q~Al~~G~~~~~s~~~-tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 284 (338)
+|=..|-++++.=....+ .|- |-.+-+...++|+.+|||....... .. -..+.++++.|+++-+.
T Consensus 57 iGq~~qf~s~~~~GVS~t-mPiStg~QLvg~sl~gv~~fgEW~~~~~~-~~-G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 57 IGQIGQFKSFKKIGVSKT-MPISTGLQLVGTSLIGVLFFGEWTTTTQK-II-GFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHhcceee-eccchhHHHHHHHHHHHhhcCCCCCcchH-HH-HHHHHHHHHHHHHHhcc
Confidence 444566667764321111 122 4445556688999999999865533 33 24577888888865554
No 81
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=46.07 E-value=23 Score=29.35 Aligned_cols=60 Identities=20% Similarity=0.167 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhc-------CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019607 51 GFLMDIFGALLMLRALSQA-------PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (338)
Q Consensus 51 G~~~~~~G~~l~~~AL~~~-------plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl 112 (338)
..+....=+.+|+=|-+.| -+=+.|= ++++.+-.+++.+++||+++.+...|-.+.+.++
T Consensus 37 SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QE--vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av 103 (108)
T PF04342_consen 37 SWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQE--VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAV 103 (108)
T ss_pred HHHHHHHHHHHhCcchhhhccccCHHHHHHHHH--HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhh
Confidence 4445566667787776665 2333443 4578888899999999999999998877766554
No 82
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=45.86 E-value=75 Score=27.16 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=41.6
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHhhcCchhhhh-hhhhHHHHHHHHHHH----HhccccchhhHHHHHHHHHHHh
Q 019607 46 KAWV-IGFLMDIFGALLMLRALSQAPVSVIQP-VSGCGLAILSIFSHF----YLKEVMNAVDWMGITLAGIGTI 113 (338)
Q Consensus 46 p~W~-~G~~~~~~G~~l~~~AL~~~plsvVqP-l~~~~l~~~~~ls~~----~l~~rl~~~~w~gv~l~~~Gl~ 113 (338)
|+|. .|=.+-..-...+.........+...- .....+..++++-++ .-+++++.++..|+.++.+|+.
T Consensus 64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4443 444444444444555553333333333 345666666666665 5778899999999999888875
No 83
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=42.04 E-value=2.9e+02 Score=31.88 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcCch-----------hhhhhhhhHHHHHHHHHHHHhccccchhh
Q 019607 44 VNKAWVIGFLMDIFGALLMLRALSQAPVS-----------VIQPVSGCGLAILSIFSHFYLKEVMNAVD 101 (338)
Q Consensus 44 r~p~W~~G~~~~~~G~~l~~~AL~~~pls-----------vVqPl~~~~l~~~~~ls~~~l~~rl~~~~ 101 (338)
|+-.||+-+++..++.+++++-....+.. .+.-+..+.+++.++.+...+.+|.++..
T Consensus 74 ~r~Aw~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~L~~~R~~F~~~~~~~s 142 (1094)
T PRK02983 74 KRAAWWVLLAYLVLAALLNVALLALGVNTAAETFGENSLSIIGFAVHVVAIVLLVLARREFPARVRRGA 142 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccCCCCcch
Confidence 34559999999999999987765543221 22233334455556666667777754433
No 84
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=41.68 E-value=1.2e+02 Score=29.76 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 48 WVIGFLMDIFGALLMLRALSQA---PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 48 W~~G~~~~~~G~~l~~~AL~~~---plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
|..-..+...--+.|=.|+.+- |+-++ .=..+++-+..++..++++|-+.++...+..+.+|++.-.
T Consensus 67 Y~i~V~mFF~vnv~NN~al~f~I~~PlHiI--fRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcT 136 (330)
T KOG1583|consen 67 YAITVAMFFIVNVTNNYALKFNIPMPLHII--FRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICT 136 (330)
T ss_pred hheehheeeeeeeeccceeeecccceEEEE--EecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEE
Confidence 4444444444444455566554 44443 2367999999999999999999999999999999987743
No 85
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=36.58 E-value=4.6e+02 Score=26.43 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHhhhcCC--------chhHHHHHHHHHHHHHHHHHHHHhCCC-CCCChhH
Q 019607 221 YQTRGLKHGR--------AIVVSTCAAVASIVTGVVAGMLALGER-LPSAPTA 264 (338)
Q Consensus 221 l~q~Al~~G~--------~~~~s~~~tva~pvvav~~Gv~vlGE~-~~~~~~~ 264 (338)
....|.+.|= +.++|+.+.+++|+.+....+.-+=|. ...+-..
T Consensus 112 I~eVA~~~~IRPeRPls~svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~~ 164 (364)
T PF03605_consen 112 IAEVAKENGIRPERPLSISVVASQIAITASPISAATVAMIAILAPAHGVSLLQ 164 (364)
T ss_pred HHHHHHHcCCCCCCchHHHHHHHhcchhcCcHHHHHHHHHHHHccccCCCHHH
Confidence 3456777661 366677778889999988888777777 5444433
No 86
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=35.96 E-value=6.2 Score=38.76 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019607 54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (338)
Q Consensus 54 ~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl 112 (338)
...+|-++.=.+|..-|++.+|-+-++..+|+.+++.++.+|+.++..|..+..+..|+
T Consensus 92 ~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV 150 (316)
T KOG1441|consen 92 VFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGV 150 (316)
T ss_pred HHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeE
Confidence 35567777788999999999999999999999999999999999999996555444443
No 87
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=31.28 E-value=2.6e+02 Score=23.08 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhh---hcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019607 212 ICCSGTGFYYQTRGL---KHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVV 280 (338)
Q Consensus 212 v~~~~~g~~l~q~Al---~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv 280 (338)
+..+..++.++-..+ +.-+++..+.. .....+.-+++|+++|||+. ++. ...|.++.+.|++
T Consensus 85 ~~~~~~~~~~n~~~f~~i~~tS~lt~~v~-~~~K~~~~i~~s~~~f~~~~--t~~----~~~G~~l~~~G~~ 149 (153)
T PF03151_consen 85 ILSGLLAFLYNLSSFLLIKLTSPLTYSVL-GNVKRILVILLSVIFFGEPI--TPL----QIIGIVLALVGVL 149 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHHHH-HHHHHHHHHHHHhhhcCCcC--CHH----HHHHHHHHHHHHh
Confidence 444555555444333 23333322222 34455666899999999986 333 3456666666664
No 88
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=31.07 E-value=94 Score=26.50 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 019607 252 LALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVR 290 (338)
Q Consensus 252 ~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~~l~~ 290 (338)
+||--.-..+||-....++.++.++.|+++|.++....|
T Consensus 24 lW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANR 62 (125)
T PF15048_consen 24 LWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANR 62 (125)
T ss_pred HHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 466666667888888889999999999999999875554
No 89
>COG3859 Predicted membrane protein [Function unknown]
Probab=29.54 E-value=4.3e+02 Score=23.93 Aligned_cols=83 Identities=14% Similarity=0.333 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhccCccc-hhH-HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHH--
Q 019607 171 IIYGLESGILFGMASVISKLGFVFLEQGFPT-MLV-PVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTG-- 246 (338)
Q Consensus 171 ~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~-l~~-p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvva-- 246 (338)
.-.|..+|+.+|+......-++.. ...+ +.+ +..+ ...|..|.+-++...+.+...... +...+++
T Consensus 53 ~kaG~~tGLl~Gll~~i~G~~Y~l---hpsQ~~ldYilaf---~~iG~aG~F~~~~~~~~~k~i~~~----~~~~~~av~ 122 (185)
T COG3859 53 LKAGLLTGLLWGLLHLILGKAYIL---HPSQVLLDYILAF---MAIGFAGLFASSVRKQKKKLINKA----LGGVFIAVF 122 (185)
T ss_pred hHHHHHHHHHHHHHHHHhCchhhc---cHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 337888999999885544322111 1222 222 2222 235667888888776666532211 1222333
Q ss_pred ------HHHHHHHhCCCCCCChh
Q 019607 247 ------VVAGMLALGERLPSAPT 263 (338)
Q Consensus 247 ------v~~Gv~vlGE~~~~~~~ 263 (338)
++.|++++||..|.++.
T Consensus 123 lRyl~HfisGivFfgsyApkG~~ 145 (185)
T COG3859 123 LRYLFHFISGIVFFGSYAPKGWS 145 (185)
T ss_pred HHHHHHHHHHHheeeccCCCCCc
Confidence 78899999999998754
No 90
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=28.83 E-value=71 Score=30.58 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=47.5
Q ss_pred hhhh-HHHHHHHHHHHHHHHHH----HHhhcCch--hhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019607 44 VNKA-WVIGFLMDIFGALLMLR----ALSQAPVS--VIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (338)
Q Consensus 44 r~p~-W~~G~~~~~~G~~l~~~----AL~~~pls--vVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~ 114 (338)
|.|. ||-=.++.+.+.+.|.. --.|+|+. +|.. .-=.||.+.|..+++.+++.++|+|..++-.++..
T Consensus 236 RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTT---TRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 236 RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTT---TRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEee---hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 5554 66555555556555532 23577764 3332 35569999999999999999999999888777654
No 91
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=27.51 E-value=3.9e+02 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=26.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhh
Q 019607 38 VIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQP 76 (338)
Q Consensus 38 ~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqP 76 (338)
..+..+|||..|...+.....+.....-..+.|..+.+-
T Consensus 210 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~ 248 (413)
T PRK15403 210 DFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA 248 (413)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Confidence 456778999998877776666665555555667665543
No 92
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.06 E-value=2.5e+02 Score=23.55 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019607 239 AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS 286 (338)
Q Consensus 239 tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~ 286 (338)
.+.-.+||+.+|++ ++-...++||..+.+++ +=+++|+..+-++.
T Consensus 52 fIsGilVGa~iG~l-lD~~agTsPwglIv~ll--lGf~AG~lnv~Rsa 96 (116)
T COG5336 52 FISGILVGAGIGWL-LDKFAGTSPWGLIVFLL--LGFGAGVLNVLRSA 96 (116)
T ss_pred HHHHHHHHHHHHHH-HHHhcCCCcHHHHHHHH--HHHHHHHHHHHHHh
Confidence 34556777777764 56677888887653322 22345555555544
No 93
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=26.69 E-value=1.4e+02 Score=27.91 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 61 l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
+...||-...-+.+..+.+++-.|--+++...++.|+...+.++..+...|++++.
T Consensus 69 ~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314|consen 69 LYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred HHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE
Confidence 46788999999999999999999999999999999999999999988888888887
No 94
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=26.64 E-value=1.1e+02 Score=24.31 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=16.2
Q ss_pred CCCCCccccchhhhhhhhcccccc
Q 019607 313 KDSGPSAVIPAATLHQLITSTAKE 336 (338)
Q Consensus 313 ~~~~p~~~~~~~~~~~~~~~~~~~ 336 (338)
+|...=+++-++..||.=++.+||
T Consensus 61 ~~~~~l~~viaaavh~h~~~~~k~ 84 (84)
T COG3630 61 EDFERLAAVIAAAVHHHRRRTAKE 84 (84)
T ss_pred chhHHHHHHHHHHHHHHHhhcccC
Confidence 334444455588899988888775
No 95
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=24.55 E-value=6.2e+02 Score=25.86 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=53.1
Q ss_pred HHHHhhhh---hHHHHHHHHHHHHHHH----------HHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHH--
Q 019607 39 IRAYAVNK---AWVIGFLMDIFGALLM----------LRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM-- 103 (338)
Q Consensus 39 l~~llr~p---~W~~G~~~~~~G~~l~----------~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~-- 103 (338)
.+++.++| ++..=+.+..+++.+| +.-+..+.-+-.+.+...+.++...+..+++.+|.+...+.
T Consensus 201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~ 280 (403)
T PF03209_consen 201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAAL 280 (403)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 44455554 4555566666776664 45555556666677777888999999999999999887774
Q ss_pred HHHHHHHHHhhhc
Q 019607 104 GITLAGIGTIGVG 116 (338)
Q Consensus 104 gv~l~~~Gl~~l~ 116 (338)
|+..+.++...+.
T Consensus 281 G~~~~~~~f~lii 293 (403)
T PF03209_consen 281 GCLLGALAFALII 293 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 96
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=24.54 E-value=1.9e+02 Score=22.74 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=6.4
Q ss_pred ccccchhhhhh
Q 019607 318 SAVIPAATLHQ 328 (338)
Q Consensus 318 ~~~~~~~~~~~ 328 (338)
.++|.|+==||
T Consensus 67 ~avIsAAI~~h 77 (82)
T PRK02919 67 KPVIAAAIHHH 77 (82)
T ss_pred HHHHHHHHHHH
Confidence 45776665445
No 97
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=22.81 E-value=1.2e+03 Score=26.94 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh------------hcCchhh-hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019607 46 KAWVIGFLMDIFGALLMLRALS------------QAPVSVI-QPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (338)
Q Consensus 46 p~W~~G~~~~~~G~~l~~~AL~------------~~plsvV-qPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl 112 (338)
.+|++++++.++|++.-+.++. +.|..+. +|-..+...+.+++-+.-|++|.+..-|+.+++..+++
T Consensus 10 ~p~~~~~~~~~~~~~~l~~~v~p~~~~~~~~~~~~~~~~~~~~~~~sl~~g~~Ll~lA~gL~rr~r~Aw~~~~~~~~~~~ 89 (1094)
T PRK02983 10 VPAAAGWTVGVIATLSLLASVSPLLRWIIRVPREFVDDYLFNFPDTSLAWAFVLALLAAALRRRKRAAWWVLLAYLVLAA 89 (1094)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhcChhhhCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3467788888888777665553 3344444 33233444455566667788888888888877766655
Q ss_pred hh
Q 019607 113 IG 114 (338)
Q Consensus 113 ~~ 114 (338)
+.
T Consensus 90 ~~ 91 (1094)
T PRK02983 90 LL 91 (1094)
T ss_pred HH
Confidence 44
No 98
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=21.83 E-value=3e+02 Score=23.96 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhh-ccCc-cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Q 019607 173 YGLESGILFGMASVISKLGFVFL-EQGF-PTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAG 250 (338)
Q Consensus 173 lg~aaGl~fg~~a~l~K~~~~~~-~~g~-~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~G 250 (338)
+|.--|+.+=..++++-.+..-. .+.. ..+.+|..+ ..+.+|+.--++..++.+-=+ .+|..+...++|.++|
T Consensus 44 ~Gl~~GiiiLtiaiLvPiAtGki~~~~l~~~f~s~~g~-~Ai~~Gilva~l~g~Gv~Ll~----~~P~v~~gLviGTIiG 118 (140)
T PF04284_consen 44 KGLNWGIIILTIAILVPIATGKIGFKDLLNSFKSWKGI-IAILAGILVAWLGGRGVNLLK----VQPQVIVGLVIGTIIG 118 (140)
T ss_pred hChhHhHHHHHHHHHccccCCCcCHHHHHHHHhCHHHH-HHHHHHHHHHHHhccChHHHc----cCChhhHHHHHHHHHH
Confidence 57777777777777776543211 1111 223444444 335566666566655554222 2344566789999999
Q ss_pred HHHhCCCCCCChh
Q 019607 251 MLALGERLPSAPT 263 (338)
Q Consensus 251 v~vlGE~~~~~~~ 263 (338)
+.+|+.- |.+|.
T Consensus 119 V~ff~Gv-pvGPL 130 (140)
T PF04284_consen 119 VAFFKGV-PVGPL 130 (140)
T ss_pred HHHcCCc-ccchH
Confidence 9999864 77874
No 99
>PF09534 Trp_oprn_chp: Tryptophan-associated transmembrane protein (Trp_oprn_chp); InterPro: IPR019051 Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.
Probab=21.12 E-value=1.8e+02 Score=26.37 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=11.9
Q ss_pred ChhH-HHHHHHHHHHHHHHHHHHhh
Q 019607 261 APTA-RFSLLLGWLLIMIGVVLLVS 284 (338)
Q Consensus 261 ~~~~-~~~~~~g~~li~~gvv~l~~ 284 (338)
++|+ .+....|.+++++|+.++-+
T Consensus 119 t~wp~~la~~gg~l~~~agvl~~~~ 143 (189)
T PF09534_consen 119 TAWPPWLALAGGVLALAAGVLLARR 143 (189)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3443 44444555555666655443
Done!