Query 019607
Match_columns 338
No_of_seqs 142 out of 420
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.8 3.6E-08 1.2E-12 80.4 12.5 100 4-117 3-103 (110)
2 2i68_A Protein EMRE; transmemb 98.6 9.9E-08 3.4E-12 81.0 7.6 99 4-116 3-102 (137)
3 2i68_A Protein EMRE; transmemb 97.7 0.00019 6.6E-09 60.6 10.1 70 210-285 35-104 (137)
4 3b5d_A Multidrug transporter E 97.3 0.0051 1.7E-07 49.6 12.5 97 175-285 8-104 (110)
5 2zt9_E Cytochrome B6-F complex 15.9 1.1E+02 0.0036 19.0 2.4 16 170-185 12-27 (31)
6 3rlb_A THIT; S-component, ECF 13.8 6E+02 0.02 21.7 7.8 25 237-261 126-150 (192)
7 3o7q_A L-fucose-proton symport 12.3 6.8E+02 0.023 22.3 8.2 36 37-72 249-284 (438)
8 1vf5_E Protein PET L; photosyn 7.4 1.4E+02 0.0047 18.6 0.8 15 170-184 13-27 (32)
9 2zy9_A Mg2+ transporter MGTE; 6.5 1.5E+03 0.053 21.4 9.4 29 38-66 374-402 (473)
10 2nr1_A NR1 M2, M2; receptor, s 5.0 5.7E+02 0.02 15.1 2.6 16 7-22 7-22 (27)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.85 E-value=3.6e-08 Score=80.41 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 019607 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL 82 (338)
Q Consensus 4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl-~~~~l 82 (338)
+.++-+++.++...++.+.|++. + .-|.++++.+....++++.+...|++..|++.+.|+ ..++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~------~--------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~ 68 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------C--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence 45666788889999999999863 1 113466778999999999999999999999999999 69999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhcc
Q 019607 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (338)
Q Consensus 83 ~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~ 117 (338)
+++.+++.+++||+++..+|.|+.+++.|++++..
T Consensus 69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988863
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.58 E-value=9.9e-08 Score=80.97 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 019607 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL 82 (338)
Q Consensus 4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl-~~~~l 82 (338)
+.++-+++.++...++.+.|++. + ..+.++++.|+...++++.+...|+...|++.+.|+ ..++.
T Consensus 3 ~~l~Ll~ail~ev~~~~~lK~s~------g--------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~p 68 (137)
T 2i68_A 3 PYIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------c--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence 34556678888889999999863 1 123466779999999999999999999999999999 79999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (338)
Q Consensus 83 ~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~ 116 (338)
+++.+++.++++|+++..+|+|++++++|++++.
T Consensus 69 v~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998875
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.72 E-value=0.00019 Score=60.60 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607 210 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS 285 (338)
Q Consensus 210 ~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s 285 (338)
..+++..+++++++++++..+...+....+...|+..+++|+.+|||+.... ..+|.++++.|++++...
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 4455677889999999999996554443356799999999999999998553 357889999999988653
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.26 E-value=0.0051 Score=49.60 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 019607 175 LESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLAL 254 (338)
Q Consensus 175 ~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vl 254 (338)
+.++++-.....+.|.. +|+.. ++.....+++..+++++.+++++..|...+....+-..|+...++|+.+|
T Consensus 8 ~~a~~~e~~~~~~lK~s-----~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~ 79 (110)
T 3b5d_A 8 GGAILAEVIGTTLMKFS-----EGFTR---LWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF 79 (110)
T ss_pred HHHHHHHHHHHHHHHhc-----cCcch---HHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHh
Confidence 33444444445556653 23321 22223444556778899999999999655443325678999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607 255 GERLPSAPTARFSLLLGWLLIMIGVVLLVSS 285 (338)
Q Consensus 255 GE~~~~~~~~~~~~~~g~~li~~gvv~l~~s 285 (338)
||+.+. . ..+|..+++.|++.+...
T Consensus 80 ~E~~s~--~----~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 80 GQRLDL--P----AIIGMMLICAGVLIINLL 104 (110)
T ss_pred CCCCCH--H----HHHHHHHHHHHHHHHhcC
Confidence 999833 2 457889999999988653
No 5
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=15.95 E-value=1.1e+02 Score=19.01 Aligned_cols=16 Identities=38% Similarity=0.912 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019607 170 EIIYGLESGILFGMAS 185 (338)
Q Consensus 170 a~llg~aaGl~fg~~a 185 (338)
+...|+++|+.||+-+
T Consensus 12 ~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 12 ALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999999864
No 6
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=13.77 E-value=6e+02 Score=21.72 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC
Q 019607 237 CAAVASIVTGVVAGMLALGERLPSA 261 (338)
Q Consensus 237 ~~tva~pvvav~~Gv~vlGE~~~~~ 261 (338)
.++..--+..++.|+++|++..|.+
T Consensus 126 ig~~~r~~~~~isgvvff~~yaP~g 150 (192)
T 3rlb_A 126 VAVLLKYFFHFIAGIIFWSQYAWKG 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCccc
Confidence 3356666777899999999887763
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.30 E-value=6.8e+02 Score=22.31 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=24.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCch
Q 019607 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS 72 (338)
Q Consensus 37 ~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~pls 72 (338)
+..++.+|+|.++............+..-..+.|..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899998887777766666555555555555
No 8
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=7.45 E-value=1.4e+02 Score=18.60 Aligned_cols=15 Identities=27% Similarity=0.895 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 019607 170 EIIYGLESGILFGMA 184 (338)
Q Consensus 170 a~llg~aaGl~fg~~ 184 (338)
+...|+++|+.||+-
T Consensus 13 ~~~f~iA~GL~fGlr 27 (32)
T 1vf5_E 13 ALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888899888864
No 9
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=6.46 E-value=1.5e+03 Score=21.42 Aligned_cols=29 Identities=17% Similarity=-0.048 Sum_probs=11.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 019607 38 VIRAYAVNKAWVIGFLMDIFGALLMLRAL 66 (338)
Q Consensus 38 ~l~~llr~p~W~~G~~~~~~G~~l~~~AL 66 (338)
...+.+++.....-+.-.+.|.+..+.++
T Consensus 374 ~~~~~~~ke~~~~~~~g~~~~~~~~~~~~ 402 (473)
T 2zy9_A 374 DWRRVFLKEMGVGLLLGLTLSFLLVGKVY 402 (473)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333334444444333
No 10
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=5.01 E-value=5.7e+02 Score=15.14 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019607 7 LTLAATAGNNIGKVLQ 22 (338)
Q Consensus 7 lAl~aA~~~~~g~vlQ 22 (338)
+-+.+|++|.+|..+-
T Consensus 7 ~~l~aa~wF~WGvlln 22 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhhee
Confidence 4567888888887764
Done!