Query 019607
Match_columns 338
No_of_seqs 142 out of 420
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 04:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019607.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019607hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 15.2 83 0.0061 17.5 3.2 17 168-184 11-27 (32)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 7.2 2.2E+02 0.016 19.5 4.1 27 254-283 57-83 (103)
3 d2axtj1 f.23.32.1 (J:7-40) Pho 4.3 1.8E+02 0.013 16.7 1.5 10 44-53 1-10 (34)
4 d2cuja1 a.4.1.18 (A:8-108) Tra 4.2 1.6E+02 0.012 20.9 1.5 25 310-335 15-39 (101)
5 d1pv7a_ f.38.1.2 (A:) Lactose 3.2 7E+02 0.051 19.0 5.1 9 42-50 3-11 (417)
6 d3cmba1 d.347.1.1 (A:1-264) Ac 2.2 2.5E+02 0.018 22.8 0.8 15 317-331 219-233 (264)
7 d1uspa_ d.227.1.1 (A:) Organic 2.2 6.5E+02 0.048 17.2 3.3 22 5-26 48-69 (137)
8 d1irqa_ a.43.1.4 (A:) Omega tr 2.0 2.8E+02 0.02 16.7 0.6 9 323-331 10-18 (48)
9 d1cola_ f.1.1.1 (A:) Colicin A 1.9 6.1E+02 0.045 19.9 2.8 21 74-94 165-185 (197)
10 d2p7tc1 f.14.1.1 (C:86-119) Po 1.9 5.7E+02 0.041 14.0 1.8 25 71-95 9-33 (34)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.23 E-value=83 Score=17.52 Aligned_cols=17 Identities=24% Similarity=0.739 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019607 168 VEEIIYGLESGILFGMA 184 (338)
Q Consensus 168 ~~a~llg~aaGl~fg~~ 184 (338)
.-++++|.+.|+.|+.-
T Consensus 11 fialffgiavgiifaik 27 (32)
T d2e74e1 11 FIALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhheeeEE
Confidence 34688899999988764
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.20 E-value=2.2e+02 Score=19.54 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=17.5
Q ss_pred hCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607 254 LGERLPSAPTARFSLLLGWLLIMIGVVLLV 283 (338)
Q Consensus 254 lGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 283 (338)
+||-.|.++.++. ++...++.|+...+
T Consensus 57 YGDi~P~t~~gr~---~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 57 YGDLYPVTLWGRC---VAVVVMVAGITSFG 83 (103)
T ss_dssp CSSSCCCSHHHHH---HHHHHHHHHHHHHH
T ss_pred cCccccCChhHHH---HHHHHHHHHHHHHH
Confidence 7898888876554 45556666665543
No 3
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.32 E-value=1.8e+02 Score=16.66 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=6.6
Q ss_pred hhhhHHHHHH
Q 019607 44 VNKAWVIGFL 53 (338)
Q Consensus 44 r~p~W~~G~~ 53 (338)
|-|.|+.|..
T Consensus 1 riPLWlv~tv 10 (34)
T d2axtj1 1 RIPLWIVATV 10 (34)
T ss_dssp CCCHHHHHHH
T ss_pred CCcEEEeeeh
Confidence 3477877765
No 4
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.15 E-value=1.6e+02 Score=20.93 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=18.1
Q ss_pred CCCCCCCCccccchhhhhhhhccccc
Q 019607 310 QRVKDSGPSAVIPAATLHQLITSTAK 335 (338)
Q Consensus 310 ~~~~~~~p~~~~~~~~~~~~~~~~~~ 335 (338)
+..|..+|-+....|.+ |+|+...|
T Consensus 15 ~~rk~~~pldi~~~p~~-~lLs~~E~ 39 (101)
T d2cuja1 15 SGRRSAPPLNLTGLPGT-EKLNEKEK 39 (101)
T ss_dssp CCCSSCCCCCCTTSTTT-TTSCHHHH
T ss_pred CCCCCCCCCCccCCCCh-hhcCHHHH
Confidence 44566678888889999 77776544
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.16 E-value=7e+02 Score=18.96 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=5.8
Q ss_pred HhhhhhHHH
Q 019607 42 YAVNKAWVI 50 (338)
Q Consensus 42 llr~p~W~~ 50 (338)
++|||.+|.
T Consensus 3 ~lkn~~~~~ 11 (417)
T d1pv7a_ 3 YLKNTNFWM 11 (417)
T ss_dssp HHHSHHHHH
T ss_pred cccCchHHH
Confidence 577776553
No 6
>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase {Methanoculleus marisnigri [TaxId: 2198]}
Probab=2.17 E-value=2.5e+02 Score=22.79 Aligned_cols=15 Identities=0% Similarity=0.033 Sum_probs=11.6
Q ss_pred Cccccchhhhhhhhc
Q 019607 317 PSAVIPAATLHQLIT 331 (338)
Q Consensus 317 p~~~~~~~~~~~~~~ 331 (338)
++.-+|.||+||.+.
T Consensus 219 ~~~~e~~Pt~~hi~~ 233 (264)
T d3cmba1 219 ELTPMQSPAQYYIVN 233 (264)
T ss_dssp CCCTTTSTTTHHHHH
T ss_pred cCCcccccchhhccc
Confidence 556677899999874
No 7
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.17 E-value=6.5e+02 Score=17.20 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 019607 5 ICLTLAATAGNNIGKVLQKKGT 26 (338)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~aa 26 (338)
++.|+.+++...+..++++++.
T Consensus 48 llaAlasC~~~t~~~~a~~~gi 69 (137)
T d1uspa_ 48 FAAGYAACFQGALGVVSRRQKI 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 4567788888888888888876
No 8
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.01 E-value=2.8e+02 Score=16.65 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=6.6
Q ss_pred hhhhhhhhc
Q 019607 323 AATLHQLIT 331 (338)
Q Consensus 323 ~~~~~~~~~ 331 (338)
-+.+||.|.
T Consensus 10 radlhhiik 18 (48)
T d1irqa_ 10 RADLHHIIK 18 (48)
T ss_dssp EHHHHHHHH
T ss_pred eecceeeeE
Confidence 367899875
No 9
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=1.91 E-value=6.1e+02 Score=19.93 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=14.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhc
Q 019607 74 IQPVSGCGLAILSIFSHFYLK 94 (338)
Q Consensus 74 VqPl~~~~l~~~~~ls~~~l~ 94 (338)
+.|++..+.+++.+.++++--
T Consensus 165 ~~~iGI~g~li~~~v~alIdd 185 (197)
T d1cola_ 165 AIAVGIAGILLAAVVGALIDD 185 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHHHHhhH
Confidence 445677777777777776644
No 10
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.90 E-value=5.7e+02 Score=14.04 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=0.0
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcc
Q 019607 71 VSVIQPVSGCGLAILSIFSHFYLKE 95 (338)
Q Consensus 71 lsvVqPl~~~~l~~~~~ls~~~l~~ 95 (338)
+.+|.-+...+++++++--.|.-+|
T Consensus 9 vvmvagits~glv~aa~atwfvgre 33 (34)
T d2p7tc1 9 VVMVAGITSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhhHHHHHHHHhhccc
Done!