Query 019609
Match_columns 338
No_of_seqs 310 out of 1776
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 2.5E-20 8.7E-25 140.5 5.2 58 159-217 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 4.3E-20 1.5E-24 139.2 6.0 60 251-310 2-62 (63)
3 3igm_B PF14_0633 protein; AP2 94.9 0.014 4.8E-07 45.0 2.7 29 155-183 3-31 (77)
4 1u3e_M HNH homing endonuclease 86.8 0.064 2.2E-06 46.5 -1.9 88 197-292 55-146 (174)
5 3igm_B PF14_0633 protein; AP2 79.9 0.75 2.6E-05 35.4 1.8 28 247-276 3-31 (77)
6 3eik_A Tata-box-binding protei 73.7 24 0.00082 32.0 10.3 133 159-298 76-212 (218)
7 1u3e_M HNH homing endonuclease 68.3 0.72 2.5E-05 39.8 -1.0 38 160-199 109-146 (174)
8 2z8u_A Tata-box-binding protei 57.0 82 0.0028 27.6 10.2 133 158-298 45-182 (188)
9 1ais_A TBP, protein (tata-bind 51.5 78 0.0027 27.6 9.1 132 159-298 42-178 (182)
10 1z1b_A Integrase; protein-DNA 50.6 39 0.0013 30.5 7.4 43 252-298 13-55 (356)
11 1z1b_A Integrase; protein-DNA 48.3 20 0.00068 32.5 5.0 41 162-205 15-55 (356)
12 1mp9_A Tata-binding protein; t 46.3 1.4E+02 0.0048 26.3 10.0 132 159-298 46-182 (198)
13 1ytb_A Protein (tata binding p 28.3 2.1E+02 0.0073 24.7 8.1 132 159-297 38-173 (180)
14 3jtz_A Integrase; four strande 24.9 98 0.0033 23.6 4.7 36 170-205 36-75 (88)
15 1rm1_A Tata-box binding protei 23.3 2.6E+02 0.009 25.4 8.0 132 159-297 98-233 (240)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.80 E-value=2.5e-20 Score=140.47 Aligned_cols=58 Identities=48% Similarity=0.823 Sum_probs=54.1
Q ss_pred CeEEEEEecCCCeEEEEEEeC---CEEEecCCCCCHHHHHHHHHHHHHHhcCccCCcccccc
Q 019609 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE 217 (338)
Q Consensus 159 ~yrGV~~~r~~gkW~A~I~~~---gK~i~LGtF~T~eeAArAYD~Aa~~~~G~~a~~NFp~s 217 (338)
+|+||++ +++|||+|+|+++ |+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999996 5699999999994 78999999999999999999999999999999999964
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.80 E-value=4.3e-20 Score=139.23 Aligned_cols=60 Identities=38% Similarity=0.592 Sum_probs=55.6
Q ss_pred cccCeeeeecccEEEEecccc-CceeeeccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 019609 251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310 (338)
Q Consensus 251 ~yrGV~~~k~gkW~A~I~~~~-~~k~~~LG~FdTeeEAArAYD~Aaikl~G~~a~tNFp~s 310 (338)
+|+||+++++|||+|+|+... +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999988999999996544 478999999999999999999999999999999999976
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=94.90 E-value=0.014 Score=45.02 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.4
Q ss_pred CCCCCeEEEEEecCCCeEEEEEEeCCEEE
Q 019609 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV 183 (338)
Q Consensus 155 ~~tS~yrGV~~~r~~gkW~A~I~~~gK~i 183 (338)
..+|+|.||+|.++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 45799999999999999999999998853
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=86.80 E-value=0.064 Score=46.53 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCccC---Cccccccc-chhhhhhhcccchhhhhhhhccccCCCCCCCCcccCeeeeecccEEEEeccccC
Q 019609 197 AYDRAAIKFRGAEA---DINFSIED-YEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 272 (338)
Q Consensus 197 AYD~Aa~~~~G~~a---~~NFp~s~-y~~eL~qLr~lSkEE~V~aLRRqs~g~~~~sS~yrGV~~~k~gkW~A~I~~~~~ 272 (338)
++...+..|.|... ..++-..+ ....+..|+.++..+.......... . ...+||.+...++|.+.| ...
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~~~~~k~~~vi--~~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQIAKIKNQKPII--VIS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHHHHHHTCCCEE--EEC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeeeccCCCCceEE--EEc
Confidence 55556666766532 13332211 2346778888888887765544431 1 124577652356799988 445
Q ss_pred ceeeeccCCCCHHHHHHHHH
Q 019609 273 KKYVYLGLFDTEVEAARAYD 292 (338)
Q Consensus 273 ~k~~~LG~FdTeeEAArAYD 292 (338)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 6678999999999999964
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=79.93 E-value=0.75 Score=35.40 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=21.0
Q ss_pred CCCCcccCeeeee-cccEEEEeccccCceee
Q 019609 247 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYV 276 (338)
Q Consensus 247 ~~sS~yrGV~~~k-~gkW~A~I~~~~~~k~~ 276 (338)
..+|+|.||+|++ .+.|.|.- ..++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W--~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFF--YDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEE--EETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEE--ecCCeEe
Confidence 4578999999997 68999997 4455543
No 6
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=73.65 E-value=24 Score=31.99 Aligned_cols=133 Identities=15% Similarity=0.167 Sum_probs=81.3
Q ss_pred CeEEEEEecCCCeEEEEEEeCCEEEecCCCCCHHHHHHHHHHHHHHhcCccCCccc---ccccchhhhhhhcccchhhhh
Q 019609 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF---SIEDYEDDLKQMSNLTKEEFV 235 (338)
Q Consensus 159 ~yrGV~~~r~~gkW~A~I~~~gK~i~LGtF~T~eeAArAYD~Aa~~~~G~~a~~NF---p~s~y~~eL~qLr~lSkEE~V 235 (338)
+|-||.++-+.-+-.+-|+..||-+-.|. .++++|..|.++.+..+....-...| ....--.....-..+..+.+.
T Consensus 76 ~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la 154 (218)
T 3eik_A 76 RFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLA 154 (218)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred cCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHH
Confidence 56688877788888999999999888776 56888888888877766432212222 211100000000111222222
Q ss_pred hhhccccCCCCCCCCcccCeeeee-cccEEEEeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 019609 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (338)
Q Consensus 236 ~aLRRqs~g~~~~sS~yrGV~~~k-~gkW~A~I~~~~~~k~~~LG~FdTeeEAArAYD~Aaikl 298 (338)
........ =....|-|+.++- .-|=...| +..||-+-.|. .+++|+..|++.-.-.|
T Consensus 155 ~~~~~~~~---YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 155 YAHSNYCS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHSTTTEE---CCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HhccCCcE---ECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 22111111 1224788988874 45677777 88899888887 78999999998865444
No 7
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=68.32 E-value=0.72 Score=39.78 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=31.2
Q ss_pred eEEEEEecCCCeEEEEEEeCCEEEecCCCCCHHHHHHHHH
Q 019609 160 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYD 199 (338)
Q Consensus 160 yrGV~~~r~~gkW~A~I~~~gK~i~LGtF~T~eeAArAYD 199 (338)
++||.+ +..++|.+.|..+ +.++||.|.|.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 467775 5667799999988 7788999999999999863
No 8
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=56.96 E-value=82 Score=27.63 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=75.0
Q ss_pred CCeEEEEEecCCCeEEEEEEeCCEEEecCCCCCHHHHHHHHHHHHHHhc--Ccc-C-Ccccccccchhhhhhhcccchhh
Q 019609 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAE-A-DINFSIEDYEDDLKQMSNLTKEE 233 (338)
Q Consensus 158 S~yrGV~~~r~~gkW~A~I~~~gK~i~LGtF~T~eeAArAYD~Aa~~~~--G~~-a-~~NFp~s~y~~eL~qLr~lSkEE 233 (338)
.+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|-.+.+..+. |-. . ..+|....-......-..+..+.
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (188)
T 2z8u_A 45 EQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDD 123 (188)
T ss_dssp ----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHH
T ss_pred CCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHH
Confidence 3678998777777888999999998777764 55677777776554443 211 1 12232111000000000112222
Q ss_pred hhhhhccccCCCCCCCCcccCeeeee-cccEEEEeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 019609 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (338)
Q Consensus 234 ~V~aLRRqs~g~~~~sS~yrGV~~~k-~gkW~A~I~~~~~~k~~~LG~FdTeeEAArAYD~Aaikl 298 (338)
+...++ .. .=...+|.|+.++- .-|=.+-| +..||-+-.|. .+++|+..|.++....+
T Consensus 124 la~~~~-~~---eYePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 124 IALMVE-GT---EYEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHST-TE---EECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHhhCc-Cc---EECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 222211 11 11234788998873 44677777 88899888886 56789999988866544
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=51.46 E-value=78 Score=27.59 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=77.2
Q ss_pred CeEEEEEecCCCeEEEEEEeCCEEEecCCCCCHHHHHHHHHHHHHHhcC--cc-C-Ccccccccchhhhhhhcccchhhh
Q 019609 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEEF 234 (338)
Q Consensus 159 ~yrGV~~~r~~gkW~A~I~~~gK~i~LGtF~T~eeAArAYD~Aa~~~~G--~~-a-~~NFp~s~y~~eL~qLr~lSkEE~ 234 (338)
+|-||.++-+.-+-.+.|+..||-+--|. .++++|..|..+.+..+.. -. . ..+|....--.....-..+..+.+
T Consensus 42 ~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~l 120 (182)
T 1ais_A 42 EFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVV 120 (182)
T ss_dssp TCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHH
T ss_pred ccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHH
Confidence 56678766666677899999998766653 6778888888776655533 21 1 123321111000000001122222
Q ss_pred hhhhccccCCCCCCCCcccCeeeee-cccEEEEeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 019609 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (338)
Q Consensus 235 V~aLRRqs~g~~~~sS~yrGV~~~k-~gkW~A~I~~~~~~k~~~LG~FdTeeEAArAYD~Aaikl 298 (338)
...++ .. .=...+|.|+.++- .-+=.+-| +..||-+..|. .+++|+..|.++-...+
T Consensus 121 a~~~~-~~---~YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 121 ALTLP-NC---EYEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp HHHST-TE---ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HhhCC-CC---EECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 22211 11 11234788988874 44677777 88899887876 56789999998876655
No 10
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=50.59 E-value=39 Score=30.46 Aligned_cols=43 Identities=16% Similarity=-0.010 Sum_probs=31.6
Q ss_pred ccCeeeeecccEEEEeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 019609 252 YRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (338)
Q Consensus 252 yrGV~~~k~gkW~A~I~~~~~~k~~~LG~FdTeeEAArAYD~Aaikl 298 (338)
..||..++.|.|+.+. ..+|+++.+|. |..||..+...+...+
T Consensus 13 p~~v~~~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 13 PPNLYIRNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp CTTEEEETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred CccceecCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 3577766778999887 45778899996 8888877766654444
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=48.29 E-value=20 Score=32.47 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=30.5
Q ss_pred EEEEecCCCeEEEEEEeCCEEEecCCCCCHHHHHHHHHHHHHHh
Q 019609 162 GVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205 (338)
Q Consensus 162 GV~~~r~~gkW~A~I~~~gK~i~LGtF~T~eeAArAYD~Aa~~~ 205 (338)
||+ .++.|.|.......||++.+|. |..+|..+...+...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 465 4677899988777899999996 8888877666554444
No 12
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=46.28 E-value=1.4e+02 Score=26.30 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=78.1
Q ss_pred CeEEEEEecCCCeEEEEEEeCCEEEecCCCCCHHHHHHHHHHHHHHhcC--cc-C-Ccccccccchhhhhhhcccchhhh
Q 019609 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEEF 234 (338)
Q Consensus 159 ~yrGV~~~r~~gkW~A~I~~~gK~i~LGtF~T~eeAArAYD~Aa~~~~G--~~-a-~~NFp~s~y~~eL~qLr~lSkEE~ 234 (338)
+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|..+.+..+.. -. . ..+|....-......-..+..+.+
T Consensus 46 ~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~l 124 (198)
T 1mp9_A 46 QFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKA 124 (198)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHH
T ss_pred cccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHH
Confidence 567888777777888999999998888875 556777777776555432 21 1 123321110000000001122222
Q ss_pred hhhhccccCCCCCCCCcccCeeeee-cccEEEEeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 019609 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (338)
Q Consensus 235 V~aLRRqs~g~~~~sS~yrGV~~~k-~gkW~A~I~~~~~~k~~~LG~FdTeeEAArAYD~Aaikl 298 (338)
...++ .. .=...+|.|+.++- .-|=.+-| +..||-+..|. .+++++..|.++....+
T Consensus 125 a~~~~-~~---~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (198)
T 1mp9_A 125 AFLLE-NN---MYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKL 182 (198)
T ss_dssp HHHSS-SE---ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HhhcC-Cc---EECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 22211 11 11234788998874 45777777 88899888886 56789999998866655
No 13
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=28.28 E-value=2.1e+02 Score=24.73 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=73.7
Q ss_pred CeEEEEEecCCCeEEEEEEeCCEEEecCCCCCHHHHHHHHHHHHHHhc--CccC-Ccccccccchhhhhhhcccchhhhh
Q 019609 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAEA-DINFSIEDYEDDLKQMSNLTKEEFV 235 (338)
Q Consensus 159 ~yrGV~~~r~~gkW~A~I~~~gK~i~LGtF~T~eeAArAYD~Aa~~~~--G~~a-~~NFp~s~y~~eL~qLr~lSkEE~V 235 (338)
+|-||.++-+.-+-.+-|+..||-+--|. .++++|..|.++.+..+. |... ..||....--.....-..+..+.+.
T Consensus 38 ~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la 116 (180)
T 1ytb_A 38 RFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLA 116 (180)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred ccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCccCHHHHH
Confidence 56788877777788899999999877775 466677777777554443 3211 1333221110000000112222222
Q ss_pred hhhccccCCCCCCCCcccCeeeee-cccEEEEeccccCceeeeccCCCCHHHHHHHHHHHHHH
Q 019609 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (338)
Q Consensus 236 ~aLRRqs~g~~~~sS~yrGV~~~k-~gkW~A~I~~~~~~k~~~LG~FdTeeEAArAYD~Aaik 297 (338)
....... .=....|.|+.++- .-|=...| +..||-+-.|. .+++|+..|++.-.-.
T Consensus 117 ~~~~~~~---~YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~ 173 (180)
T 1ytb_A 117 FSHGTFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 173 (180)
T ss_dssp HHTTTTE---ECCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred Hhcccce---EECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHH
Confidence 2211111 11234788988763 33445555 78888777775 4677888888875433
No 14
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=24.88 E-value=98 Score=23.59 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=26.0
Q ss_pred CeEEEEEEeCCE--EEecCCCC--CHHHHHHHHHHHHHHh
Q 019609 170 GRWESHIWDSGK--QVYLGGFD--TAHAAARAYDRAAIKF 205 (338)
Q Consensus 170 gkW~A~I~~~gK--~i~LGtF~--T~eeAArAYD~Aa~~~ 205 (338)
..|.-+.+.+|| ++-||.|+ |..+|-...+.+...+
T Consensus 36 K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 468888888877 67899996 6777776666655444
No 15
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=23.27 E-value=2.6e+02 Score=25.39 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=74.9
Q ss_pred CeEEEEEecCCCeEEEEEEeCCEEEecCCCCCHHHHHHHHHHHHHHhc--CccC-Ccccccccchhhhhhhcccchhhhh
Q 019609 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAEA-DINFSIEDYEDDLKQMSNLTKEEFV 235 (338)
Q Consensus 159 ~yrGV~~~r~~gkW~A~I~~~gK~i~LGtF~T~eeAArAYD~Aa~~~~--G~~a-~~NFp~s~y~~eL~qLr~lSkEE~V 235 (338)
+|-||.++-+.-+-.+-|+..||-+--|. .++++|..|.+..+..+. |... ..||....-......-..+..+.+.
T Consensus 98 ~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGa-ks~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la 176 (240)
T 1rm1_A 98 RFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLA 176 (240)
T ss_dssp TCSEEEEEEETTEEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred ccceEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHHH
Confidence 57799877777888999999999887775 456677777766554443 3221 1333321111000000112222222
Q ss_pred hhhccccCCCCCCCCcccCeeeee-cccEEEEeccccCceeeeccCCCCHHHHHHHHHHHHHH
Q 019609 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (338)
Q Consensus 236 ~aLRRqs~g~~~~sS~yrGV~~~k-~gkW~A~I~~~~~~k~~~LG~FdTeeEAArAYD~Aaik 297 (338)
........ =....|-|+.++- .-+=...| +..||-+-.|. .+++|+..|++.-.-.
T Consensus 177 ~~~~~~~~---YEPE~fPGLiyR~~~pkvvllI--F~SGKIviTGa-K~~~~~~~Ai~~i~p~ 233 (240)
T 1rm1_A 177 FSHGTFSS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 233 (240)
T ss_dssp HHTTTTEE---EETTTEEEEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred HhchhccE---ECCccCCceEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 22111110 1124778988764 34556666 88888877775 4677888888875433
Done!