Your job contains 1 sequence.
>019610
MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADH
SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL
EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI
FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP
VADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDI
IKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSMAAV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019610
(338 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 300 3.6e-59 3
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 236 7.4e-26 3
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 207 1.4e-25 3
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 220 7.1e-25 3
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 220 7.1e-25 3
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 216 9.1e-24 3
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 203 1.1e-22 3
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 203 1.1e-22 3
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 257 1.4e-20 1
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 257 1.4e-20 1
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 198 1.8e-20 2
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 203 3.4e-20 2
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 184 6.5e-19 2
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 203 7.5e-19 2
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 181 4.9e-18 3
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 164 7.9e-18 3
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 193 1.0e-17 2
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 206 1.1e-17 2
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 188 1.1e-17 3
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 188 1.4e-17 3
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 188 1.4e-17 3
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 188 1.5e-17 3
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 188 1.5e-17 3
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 188 1.5e-17 3
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 188 1.5e-17 3
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 188 1.5e-17 3
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 188 1.5e-17 3
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 188 1.5e-17 3
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 192 2.0e-17 2
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 232 1.1e-16 1
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 163 1.1e-16 3
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 164 2.4e-16 3
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 164 2.4e-16 3
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 199 2.6e-16 2
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 161 2.7e-16 3
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 163 3.1e-16 3
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 163 3.4e-16 3
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 164 4.9e-16 3
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 163 6.5e-16 3
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 163 7.3e-16 3
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 164 9.9e-16 3
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 159 1.9e-15 3
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 180 2.6e-15 2
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 170 4.2e-15 2
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 170 8.1e-15 3
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 194 1.7e-14 2
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 163 1.9e-14 3
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 170 4.1e-14 2
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 171 6.6e-14 2
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 176 7.7e-14 2
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 170 8.6e-14 2
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 170 8.6e-14 2
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 170 8.6e-14 2
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 170 8.6e-14 2
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 172 1.3e-13 2
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 158 1.4e-13 3
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 155 6.4e-13 2
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 148 7.4e-13 3
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 152 8.3e-13 4
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 165 3.2e-12 2
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 158 4.5e-11 2
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 146 6.2e-11 2
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 133 1.1e-09 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 138 1.2e-09 2
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 133 2.4e-09 2
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 139 4.3e-09 2
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 137 1.6e-08 3
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 137 1.6e-08 3
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 131 1.3e-06 2
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 134 4.1e-06 2
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 132 1.1e-05 2
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 125 6.0e-05 2
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 129 8.0e-05 3
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 123 0.00015 3
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 123 0.00015 3
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 125 0.00016 2
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 107 0.00023 2
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 123 0.00027 2
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 121 0.00042 2
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 114 0.00080 2
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 300 (110.7 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 62/90 (68%), Positives = 70/90 (77%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
DD F +GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+R
Sbjct: 844 DDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLR 903
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLEQ 122
Q V S CLGDKFSSMHGQKGVLG+LE+
Sbjct: 904 Q----VRSPCLGDKFSSMHGQKGVLGYLEE 929
Score = 298 (110.0 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 62/96 (64%), Positives = 71/96 (73%)
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
++RS+IF TFYQ+ +HMSEDKVKFRNTG PLT +PVADRKRFGGI+FGEM+ DCLI
Sbjct: 1025 MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1084
Query: 262 AHGASGNLHERL-------------KCKNVANVIQR 284
AHGAS NLHERL KCK ANVI+R
Sbjct: 1085 AHGASANLHERLFTLSDSSQMHICRKCKTYANVIER 1120
Score = 191 (72.3 bits), Expect = 5.5e-48, Sum P(3) = 5.5e-48
Identities = 40/71 (56%), Positives = 49/71 (69%)
Query: 266 SGNLHERLKCKNVANVIQRV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFS 319
S +H KCK ANVI+R + GPYCR+C S+D +++ VPYGAKLL QEL FS
Sbjct: 1102 SSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQEL-FS 1160
Query: 320 MGITLKFDTQL 330
MGITL FDT+L
Sbjct: 1161 MGITLNFDTKL 1171
Score = 121 (47.7 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDI 48
MN+ASLE G+FRSE SYKAEVD KD + K + D+++ FGK SK G +
Sbjct: 790 MNKASLERGMFRSEQIRSYKAEVDAKDSE-KRKKMDELVQFGKTHSKIGKV 839
Score = 77 (32.2 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 27/57 (47%), Positives = 33/57 (57%)
Query: 122 QTPAQLLEAALGKG-AC----DG-------LMSYATPFATSTGGVITEQ-HQSFVSQ 165
QTP QLLEAAL KG AC +G L +ATPF+T ITEQ H++ S+
Sbjct: 955 QTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSR 1011
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 236 (88.1 bits), Expect = 7.4e-26, Sum P(3) = 7.4e-26
Identities = 59/142 (41%), Positives = 83/142 (58%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
+F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+IAHGAS
Sbjct: 1111 VFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGAS 1170
Query: 267 GNLHERLK----------CKN--VANVIQRVVGGPY-CRICNSADDIIKANVPYGAKLLS 313
L ERL C + + I ++ G + CR+CN+ I + ++PY AKLL
Sbjct: 1171 AFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLF 1230
Query: 314 QELSFSMGITLKFDTQLSGVSM 335
QEL+ +M I+ + T SGVS+
Sbjct: 1231 QELA-AMNISARMFTNRSGVSV 1251
Score = 105 (42.0 bits), Expect = 7.4e-26, Sum P(3) = 7.4e-26
Identities = 34/101 (33%), Positives = 54/101 (53%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLL 77
D ++N G ++ DI+IGK A E+G D S L+ TE G+V +VL+
Sbjct: 922 DGIVNPG-VRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLV 980
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
++ D ++ S++ + M +GDKF+S HGQKG +G
Sbjct: 981 TTTPD----SLRSVKVRMRMTKVPQIGDKFASRHGQKGTIG 1017
Score = 52 (23.4 bits), Expect = 7.4e-26, Sum P(3) = 7.4e-26
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 1 MNQASLECGVFRSESYKAEVDNK 23
MNQ+S++ G+FRS Y+ D++
Sbjct: 867 MNQSSIDRGLFRSLFYRTYSDSE 889
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 207 (77.9 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 54/137 (39%), Positives = 75/137 (54%)
Query: 205 SLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 264
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHG
Sbjct: 1044 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1103
Query: 265 ASGNLHERLKCKNVANVIQ--RVVG---------GPY-CRICNSADDIIKANVPYGAKLL 312
A+ L ERL ++ A + V G + CR C + DI++ +PY KLL
Sbjct: 1104 AAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLL 1163
Query: 313 SQELSFSMGITLKFDTQ 329
QEL SM I + T+
Sbjct: 1164 FQEL-MSMAIAPRMLTK 1179
Score = 151 (58.2 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 39/91 (42%), Positives = 54/91 (59%)
Query: 29 SRPSDDMLNFGKIQSKSGDIVIGKYAEIGA-DHSIKLKHTERGLVLKVLLSSNDDGKNFA 87
+R S + + GK S D G+ + DHSI L+H+E G+V +VLL++N DG F
Sbjct: 866 TRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 925
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
V +R SV + +GDKFSS HGQKG +G
Sbjct: 926 KVRVR-SVRIPQ---IGDKFSSRHGQKGTVG 952
Score = 46 (21.3 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVK 28
MNQ+S++ G FRS SY+ E VK
Sbjct: 804 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 834
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 220 (82.5 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 56/142 (39%), Positives = 81/142 (57%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
+F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+IAHGA+
Sbjct: 1092 VFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAA 1151
Query: 267 GNLHERLK----------CK--NVANVIQRVVGGPY-CRICNSADDIIKANVPYGAKLLS 313
G L ERL C + +VI + + CR C + +I + ++PY AKLL
Sbjct: 1152 GFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLF 1211
Query: 314 QELSFSMGITLKFDTQ--LSGV 333
QEL +M I+ + T+ +SG+
Sbjct: 1212 QEL-MAMNISPRLYTERSVSGI 1232
Score = 123 (48.4 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ TE G+V +VLL++N DG F V +R V +GDKF+S HGQKG +G
Sbjct: 943 DASTPLRSTESGIVDQVLLTTNGDGSKF--VKVRMRTTKVPQ--IGDKFASRHGQKGTIG 998
Score = 50 (22.7 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 1 MNQASLECGVFRSESYKAEVD 21
MNQ+S++ G+FRS +++ +D
Sbjct: 848 MNQSSIDRGLFRSLFFRSYMD 868
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 220 (82.5 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 56/142 (39%), Positives = 81/142 (57%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
+F T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+IAHGA+
Sbjct: 1092 VFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAA 1151
Query: 267 GNLHERLK----------CK--NVANVIQRVVGGPY-CRICNSADDIIKANVPYGAKLLS 313
G L ERL C + +VI + + CR C + +I + ++PY AKLL
Sbjct: 1152 GFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLF 1211
Query: 314 QELSFSMGITLKFDTQ--LSGV 333
QEL +M I+ + T+ +SG+
Sbjct: 1212 QEL-MAMNISPRLYTERSVSGI 1232
Score = 123 (48.4 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ TE G+V +VLL++N DG F V +R V +GDKF+S HGQKG +G
Sbjct: 943 DASTPLRSTESGIVDQVLLTTNGDGSKF--VKVRMRTTKVPQ--IGDKFASRHGQKGTIG 998
Score = 50 (22.7 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 1 MNQASLECGVFRSESYKAEVD 21
MNQ+S++ G+FRS +++ +D
Sbjct: 848 MNQSSIDRGLFRSLFFRSYMD 868
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 216 (81.1 bits), Expect = 9.1e-24, Sum P(3) = 9.1e-24
Identities = 56/138 (40%), Positives = 77/138 (55%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+IAHGA+
Sbjct: 1085 IFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAA 1144
Query: 267 GNLHERLK----------CK--NVANVIQRVVGGPY-CRICNSADDIIKANVPYGAKLLS 313
L ERL C + VI ++ + C+ C++ DI + ++PY AKLL
Sbjct: 1145 SFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLF 1204
Query: 314 QELSFSMGITLKFDTQLS 331
QEL +M IT + T S
Sbjct: 1205 QEL-MAMNITPRLYTDRS 1221
Score = 117 (46.2 bits), Expect = 9.1e-24, Sum P(3) = 9.1e-24
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ TE G+V +VL+++N DG F V +R + + +GDKF+S HGQKG +G
Sbjct: 936 DASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTT--KIPQ--IGDKFASRHGQKGTIG 991
Score = 51 (23.0 bits), Expect = 9.1e-24, Sum P(3) = 9.1e-24
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 1 MNQASLECGVFRSESYKAEVDNK 23
MNQ+S++ G+FRS +++ +D +
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQE 863
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 203 (76.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 51/133 (38%), Positives = 72/133 (54%)
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
+++S IF T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I
Sbjct: 1200 MLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMI 1259
Query: 262 AHGASGNLHERL----------KCKNVANV-IQRVVGGPY-CRICNSADDIIKANVPYGA 309
+HG++ L ERL C N I + Y C +CNS +I + +PY
Sbjct: 1260 SHGSAKMLKERLFEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYLPYAC 1319
Query: 310 KLLSQELSFSMGI 322
KLL QEL +M I
Sbjct: 1320 KLLFQEL-MTMAI 1331
Score = 127 (49.8 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ L+ E G++ V+LSSN G FA V +R SV + +GDKF+S HGQKG +G
Sbjct: 1056 DCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVR-SVRIPQ---IGDKFASRHGQKGTIG 1111
Query: 119 FLEQT 123
+T
Sbjct: 1112 ITYRT 1116
Score = 49 (22.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 1 MNQASLECGVFRSESYK 17
MNQ+S++ G+FRS Y+
Sbjct: 816 MNQSSIDRGLFRSVFYR 832
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 203 (76.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 51/133 (38%), Positives = 72/133 (54%)
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
+++S IF T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I
Sbjct: 1200 MLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMI 1259
Query: 262 AHGASGNLHERL----------KCKNVANV-IQRVVGGPY-CRICNSADDIIKANVPYGA 309
+HG++ L ERL C N I + Y C +CNS +I + +PY
Sbjct: 1260 SHGSAKMLKERLFEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYLPYAC 1319
Query: 310 KLLSQELSFSMGI 322
KLL QEL +M I
Sbjct: 1320 KLLFQEL-MTMAI 1331
Score = 127 (49.8 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ L+ E G++ V+LSSN G FA V +R SV + +GDKF+S HGQKG +G
Sbjct: 1056 DCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVR-SVRIPQ---IGDKFASRHGQKGTIG 1111
Query: 119 FLEQT 123
+T
Sbjct: 1112 ITYRT 1116
Score = 49 (22.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 1 MNQASLECGVFRSESYK 17
MNQ+S++ G+FRS Y+
Sbjct: 816 MNQSSIDRGLFRSVFYR 832
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 257 (95.5 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 91/272 (33%), Positives = 124/272 (45%)
Query: 60 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 119
+ IK K + K++ + N +G + +RQ+ + LGDKFSS HGQKGV+G
Sbjct: 1173 NEIKYKSVYPSYIDKIIFTENSEGLKLYKIIMRQT-RLPE---LGDKFSSRHGQKGVVGL 1228
Query: 120 L-EQTPAQLLEAALGKGACDGLMSYATPFATS-TGGVITEQHQSFVSQLLN--CIGARNS 175
L Q E+ G C L+ F + T G + E S + + G+ S
Sbjct: 1229 LVNQEDMPFTES----GICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFS 1284
Query: 176 GITFIFKHYFLFCL-FECPMDWIAFICLVRSLIFTWI----TFYQQFIHMSEDKVKFRNT 230
G F LF F C + + L + T+I +YQ+ HM +DK+ R
Sbjct: 1285 GTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARAR 1344
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN-VANV-IQRVVG- 287
G Q LT +P R + GG+ GEM+ DCLIA+G S L ERL + V NV I G
Sbjct: 1345 GPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGM 1404
Query: 288 ---GPYCRICNSADDIIKANVPYGAKLLSQEL 316
YC C D I +PY KLL QEL
Sbjct: 1405 MGYDLYCTFCKKCDKNIVIQMPYACKLLFQEL 1436
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 257 (95.5 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 91/272 (33%), Positives = 124/272 (45%)
Query: 60 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 119
+ IK K + K++ + N +G + +RQ+ + LGDKFSS HGQKGV+G
Sbjct: 1173 NEIKYKSVYPSYIDKIIFTENSEGLKLYKIIMRQT-RLPE---LGDKFSSRHGQKGVVGL 1228
Query: 120 L-EQTPAQLLEAALGKGACDGLMSYATPFATS-TGGVITEQHQSFVSQLLN--CIGARNS 175
L Q E+ G C L+ F + T G + E S + + G+ S
Sbjct: 1229 LVNQEDMPFTES----GICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFS 1284
Query: 176 GITFIFKHYFLFCL-FECPMDWIAFICLVRSLIFTWI----TFYQQFIHMSEDKVKFRNT 230
G F LF F C + + L + T+I +YQ+ HM +DK+ R
Sbjct: 1285 GTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARAR 1344
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN-VANV-IQRVVG- 287
G Q LT +P R + GG+ GEM+ DCLIA+G S L ERL + V NV I G
Sbjct: 1345 GPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGM 1404
Query: 288 ---GPYCRICNSADDIIKANVPYGAKLLSQEL 316
YC C D I +PY KLL QEL
Sbjct: 1405 MGYDLYCTFCKKCDKNIVIQMPYACKLLFQEL 1436
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 198 (74.8 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 53/135 (39%), Positives = 70/135 (51%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
+F T+YQ+ H+ +DK+ R G Q LT +PV R R GG+ FGEM+ DC I+HG S
Sbjct: 1074 VFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCS 1133
Query: 267 GNLHERL-KCKNVANVIQRVVGG-----PY------CRICNSADDIIKANVPYGAKLLSQ 314
L ERL C + VI + G Y CR C + + +PY AKLL Q
Sbjct: 1134 SVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQ 1193
Query: 315 ELSFSMGITLKFDTQ 329
EL SM I + T+
Sbjct: 1194 EL-MSMNIAPRLFTK 1207
Score = 120 (47.3 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 42/129 (32%), Positives = 65/129 (50%)
Query: 9 GVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSK---SG-DIVIGKYAEIGADH---- 60
G+ E ++ V + +++K D + + G I SG DI+IGK A I DH
Sbjct: 856 GMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELG 915
Query: 61 -----------SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSS 109
S L+ TE G+V +V++++N +G F V +R S + +GDKF+S
Sbjct: 916 QRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMR-STRIPQ---IGDKFAS 971
Query: 110 MHGQKGVLG 118
HGQKG +G
Sbjct: 972 RHGQKGTIG 980
Score = 56 (24.8 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1 MNQASLECGVFRSESYKAEVDNK 23
MNQAS++ G+FRS Y+ D +
Sbjct: 830 MNQASIDRGLFRSIFYRTYTDQE 852
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 203 (76.5 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 53/135 (39%), Positives = 75/135 (55%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF T+YQ+ HM +DK+ R+ G Q LT +PV R R GG+ FGEM+ DC+I+HGA+
Sbjct: 1036 IFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAA 1095
Query: 267 GNLHERLKCKN------VANV-----IQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQ 314
L ERL ++ + ++ I + + CR C + I + +PY AKLL Q
Sbjct: 1096 QFLKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQ 1155
Query: 315 ELSFSMGITLKFDTQ 329
EL SM I + TQ
Sbjct: 1156 EL-MSMSIAPRMFTQ 1169
Score = 111 (44.1 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 35/114 (30%), Positives = 55/114 (48%)
Query: 8 CGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGK---IQSKSGDIVIGKYAEIGADHSIKL 64
C R SY+ D+ + R + D + GK + D+ D S L
Sbjct: 833 CAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTAL 892
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
+ +E G+V +V+L+++ +G F V +R S+ + +GDKFSS HGQKG G
Sbjct: 893 RSSETGIVDQVILTTSGEGFKFCKVRVR-SMRVPQ---IGDKFSSRHGQKGTCG 942
Score = 51 (23.0 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ 26
+NQ++++ G+FRS Y+A D + Q
Sbjct: 792 LNQSAIDRGLFRSMFYRAYKDEQKKQ 817
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 184 (69.8 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 47/128 (36%), Positives = 65/128 (50%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF T+YQ+ HM +DK+ R G Q + +P+ R R GG+ FGEM+ DC I+HGA+
Sbjct: 1047 IFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGAT 1106
Query: 267 GNLHERL----------KCKNVAN-VIQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQ 314
L ERL C N V+ + + C+ C + + +PY KLL Q
Sbjct: 1107 QFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQ 1166
Query: 315 ELSFSMGI 322
EL SM I
Sbjct: 1167 EL-MSMSI 1173
Score = 121 (47.7 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 7 ECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGK---IQSKSGDI-VIGK-YAEIGADHS 61
+C R Y ++ I R S D + GK + D+ GK Y + D S
Sbjct: 842 KCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPK--RDAS 899
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
L+ +E G+V +V+LS N DG F + +R SV + +GDKF+S HGQKG +G +
Sbjct: 900 TFLRSSETGIVDQVMLSLNSDGNKFVKIRMR-SVRLPQ---IGDKFASRHGQKGTMGIM 954
Score = 50 (22.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 1 MNQASLECGVFRSESYKAEVDNK 23
MN ++++ G+FRS Y++ DN+
Sbjct: 802 MNNSAIDRGLFRSVFYRSYRDNE 824
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 203 (76.5 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 53/128 (41%), Positives = 74/128 (57%)
Query: 201 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 260
CL ++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+
Sbjct: 1022 CL-QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCV 1080
Query: 261 IAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQ 314
IA+GAS L ERL + A +V + ++G +C C S++++IK +PY AKLL Q
Sbjct: 1081 IAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSSENVIKMTIPYAAKLLFQ 1140
Query: 315 ELSFSMGI 322
EL SM I
Sbjct: 1141 EL-LSMNI 1147
Score = 98 (39.6 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
+ + SGD +G E A S + K E + +V++S +D+ + V +RQ+
Sbjct: 855 VPTNSGDSTLGAQQEQRAAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQT- 913
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFLEQ 122
LGDKFSS HGQKGV G + Q
Sbjct: 914 ---RRPELGDKFSSRHGQKGVCGIIVQ 937
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 181 (68.8 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 48/132 (36%), Positives = 70/132 (53%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + +F T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC I+
Sbjct: 1039 INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIS 1098
Query: 263 HGASGNLHERL-KCKN-----VAN-----VIQRVVGGPY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + + N I + + C+ C + I + +PY AK
Sbjct: 1099 HGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAK 1158
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1159 LLFQEL-MSMNI 1169
Score = 109 (43.4 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+++E G+V +V+L+ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 893 DASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 948
Score = 47 (21.6 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGK 40
+N +++E G FRS Y++ D+++ R D NF K
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSEN----KRVGDQEENFEK 833
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 164 (62.8 bits), Expect = 7.9e-18, Sum P(3) = 7.9e-18
Identities = 39/95 (41%), Positives = 52/95 (54%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
I+ + +YQ+ HM DK + R TG LT +PV RKR GGI FGEM+ D +I HG S
Sbjct: 1011 IYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTS 1070
Query: 267 GNLHERLKCKNVANVIQRVVGGPYCRICNSADDII 301
+ +RL N ++ Q V CR C S I+
Sbjct: 1071 FLMQDRLM--NCSDYAQSWV----CRDCGSIISIM 1099
Score = 120 (47.3 bits), Expect = 7.9e-18, Sum P(3) = 7.9e-18
Identities = 32/84 (38%), Positives = 44/84 (52%)
Query: 34 DMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKH-TERGLVLKVLLSSNDDGKNFAVVSIR 92
D L F I+ + GD ++ Y E + I+ H TE G V +V L ND G + I
Sbjct: 829 DGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDS-ECQQIH 887
Query: 93 QSVNMVHSACLGDKFSSMHGQKGV 116
+ + S +GDKFSS HGQKG+
Sbjct: 888 VKLRITRSPIIGDKFSSRHGQKGI 911
Score = 54 (24.1 bits), Expect = 7.9e-18, Sum P(3) = 7.9e-18
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 123 TPAQLLEAALGK-GACDGLMSYATPFATS 150
T +E+ GK GAC GL +TPF S
Sbjct: 944 TIGMFIESLAGKAGACHGLAQDSTPFIYS 972
Score = 37 (18.1 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 69 RGLVLKVLLSSNDDGKN-FAVV--SIRQSVNMVHSACLGDKFSSMHGQKGVLG-FL 120
R L+ KV+L + K+ F ++ IR+ +V C D S Q+ +LG FL
Sbjct: 328 RFLLQKVVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFL 383
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 193 (73.0 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 51/126 (40%), Positives = 70/126 (55%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLIA
Sbjct: 1029 LEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIA 1088
Query: 263 HGASGNLHERLKCKNVA---NVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A +V + ++G +C C S +++K +PY AKLL QEL
Sbjct: 1089 YGASQLLLERLMISSDACDVDVCGQCGLLGYKGWCNSCQSTREVVKMTIPYAAKLLFQEL 1148
Query: 317 SFSMGI 322
SM I
Sbjct: 1149 -LSMNI 1153
Score = 99 (39.9 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ 122
K E G + KV+L++ D + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 890 KAPEPGYIDKVMLTTTDSDQTLIKVLMRQT----RRPELGDKFSSRHGQKGVCGVIVQ 943
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 206 (77.6 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 55/128 (42%), Positives = 74/128 (57%)
Query: 201 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 260
CL ++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+
Sbjct: 1012 CL-QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCV 1070
Query: 261 IAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQ 314
IA+GAS L ERL + A +V + ++G +C C SA++IIK +PY AKLL Q
Sbjct: 1071 IAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQ 1130
Query: 315 ELSFSMGI 322
EL SM I
Sbjct: 1131 EL-LSMNI 1137
Score = 83 (34.3 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGII 925
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 188 (71.2 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 962 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1021
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1022 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1081
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1082 LLFQEL-MSMSI 1092
Score = 102 (41.0 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 816 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 871
Score = 41 (19.5 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 721 MNRSAVDRGFFRSVFYRSYKEQESKK 746
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 188 (71.2 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1030 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1089
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1090 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1149
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1150 LLFQEL-MSMSI 1160
Score = 102 (41.0 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 884 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 939
Score = 41 (19.5 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 789 MNRSAVDRGFFRSVFYRSYKEQESKK 814
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 188 (71.2 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1030 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1089
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1090 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1149
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1150 LLFQEL-MSMSI 1160
Score = 102 (41.0 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 884 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 939
Score = 41 (19.5 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 789 MNRSAVDRGFFRSVFYRSYKEQESKK 814
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 188 (71.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1157 LLFQEL-MSMSI 1167
Score = 102 (41.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 891 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 946
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKK 821
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 188 (71.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1157 LLFQEL-MSMSI 1167
Score = 102 (41.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 891 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 946
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKK 821
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 188 (71.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1157 LLFQEL-MSMSI 1167
Score = 102 (41.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 891 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 946
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKK 821
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 188 (71.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1157 LLFQEL-MSMSI 1167
Score = 102 (41.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 891 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 946
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKK 821
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 188 (71.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1157 LLFQEL-MSMSI 1167
Score = 102 (41.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 891 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 946
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKK 821
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 188 (71.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1157 LLFQEL-MSMSI 1167
Score = 102 (41.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 891 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 946
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKK 821
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 188 (71.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 53/132 (40%), Positives = 69/132 (52%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1039 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1098
Query: 263 HGASGNLHERL-KCKN-----VANV--IQRVVGG---PY-CRICNSADDIIKANVPYGAK 310
HGA+ L ERL + + V N+ I + Y CR C + I +PY K
Sbjct: 1099 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1158
Query: 311 LLSQELSFSMGI 322
LL QEL SM I
Sbjct: 1159 LLFQEL-MSMSI 1169
Score = 102 (41.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 893 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 948
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 798 MNRSAVDRGFFRSVFYRSYKEQESKK 823
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 192 (72.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 46/129 (35%), Positives = 70/129 (54%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I++ +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI+
Sbjct: 1004 LEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLIS 1063
Query: 263 HGASGNLHERLKCKN------VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS + ERL + V R+ +C C S+ ++ K ++PY KLL QEL
Sbjct: 1064 YGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSKISMPYACKLLFQEL 1123
Query: 317 SFSMGITLK 325
+ SM + K
Sbjct: 1124 T-SMNVVPK 1131
Score = 97 (39.2 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V NK I + K P+ +N +Q +S + Y + I K E + +V++
Sbjct: 827 QVQNKQIMINKEMPAVTSMN--PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMV 877
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ 122
S+N + ++F + + + + +GDKFSS HGQKGV G + EQ
Sbjct: 878 SANAE-EDFLIKILLRQTRIPE---IGDKFSSRHGQKGVTGLIVEQ 919
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 232 (86.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 91/286 (31%), Positives = 130/286 (45%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI K +VLL+ N+D + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 874 DVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQT----RRPELGDKFSSRHGQKGVCG 929
Query: 119 FLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
+ Q LG D +M+ + P + G ++ + S + ++N G + G
Sbjct: 930 LIAQQEDMPFND-LGM-VPDMIMNPHGYPSRMTVGKLM--ELLSGKAGVVN--GTYHYGT 983
Query: 178 TFIFKHYFLFC--LFECPMDWIAFICLVRSL----IFTWITF----YQQFIHMSEDKVKF 227
F C L C +++ L + + +I F YQ+ HM DK+
Sbjct: 984 AFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHA 1043
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ---- 283
R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + +
Sbjct: 1044 RARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDVCTG 1103
Query: 284 -RVVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V+G +C+ C S+ + +PY KLL QEL SM I + D
Sbjct: 1104 CGVIGSKGWCQKCRSSKSMANIKIPYACKLLFQELQ-SMNIVPRLD 1148
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 163 (62.4 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 1029 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1088
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 1089 FLLHDRLFNCSDRSVAHV 1106
Score = 100 (40.3 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHS--IKLKHTERGLVLKVLLSSND 81
D +V + DD L F Q + GD Y + S + K E +V + + ND
Sbjct: 837 DPRVAQKLDDDGLPFVGAQLQYGDPYYS-YLNLNTGESFVVYYKSKENCIVDNIKVCGND 895
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V I ++ + + +GDKF+S HGQKG+L L
Sbjct: 896 TGSGRFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRL 933
Score = 64 (27.6 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1135 CSLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1170
Score = 55 (24.4 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG 39
+N+AS E G YK+E D+ K + DD L FG
Sbjct: 796 LNKASWERGFAHGSVYKSEFI--DLSEKIKQGDDSLVFG 832
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 164 (62.8 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1051
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 1052 FLLHDRLFNCSDRSVAHV 1069
Score = 99 (39.9 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEI--GADHSIKLKHTERGLVLKVLLSSND 81
D +V + +D L F + + GD G Y + G + K E +V + + SND
Sbjct: 800 DPRVMQKLDNDGLPFIGAKLEFGDPYYG-YLNLNTGEGFVVYYKSKENCVVDNIKVCSND 858
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V + +V + + +GDKF+S HGQKG+L L
Sbjct: 859 TGSGKFKCVCV--TVRVPRNPTIGDKFASRHGQKGILSRL 896
Score = 60 (26.2 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTVCGRSDSIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
Score = 55 (24.4 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ K + DD L FG K GD
Sbjct: 759 VNKASWERGFAHGSVYKSEFI--DLSEKFKQGDDSLVFGV---KPGD 800
Score = 37 (18.1 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 29 SRPSDDMLNFGKIQSKSG 46
+RP + +L G ++SK+G
Sbjct: 427 TRPFEYLLATGNLRSKTG 444
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 164 (62.8 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1051
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 1052 FLLHDRLFNCSDRSVAHV 1069
Score = 99 (39.9 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEI--GADHSIKLKHTERGLVLKVLLSSND 81
D +V + +D L F + + GD G Y + G + K E +V + + SND
Sbjct: 800 DPRVMQKLDNDGLPFIGAKLEFGDPYYG-YLNLNTGEGFVVYYKSKENCVVDNIKVCSND 858
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V + +V + + +GDKF+S HGQKG+L L
Sbjct: 859 TGSGKFKCVCV--TVRVPRNPTIGDKFASRHGQKGILSRL 896
Score = 60 (26.2 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTVCGRSDSIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
Score = 55 (24.4 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ K + DD L FG K GD
Sbjct: 759 VNKASWERGFAHGSVYKSEFI--DLSEKFKQGDDSLVFGV---KPGD 800
Score = 37 (18.1 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 29 SRPSDDMLNFGKIQSKSG 46
+RP + +L G ++SK+G
Sbjct: 427 TRPFEYLLATGNLRSKTG 444
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 199 (75.1 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 49/125 (39%), Positives = 72/125 (57%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S
Sbjct: 1089 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1148
Query: 267 GNLHERLKC---KNVANVIQRV--VGG-PYCRICNSADDIIKANVPYGAKLLSQELSFSM 320
L ERL ++ +V ++ +G +C+ C S+ ++K +PY AKLL QEL SM
Sbjct: 1149 QLLLERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQEL-MSM 1207
Query: 321 GITLK 325
+T +
Sbjct: 1208 NVTAR 1212
Score = 79 (32.9 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
KV++S+ ++ V RQ+ +GDKFSS HGQKGV G +
Sbjct: 955 KVMISATENENQIIKVLTRQT----RRPEVGDKFSSRHGQKGVTGII 997
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 161 (61.7 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 35/78 (44%), Positives = 48/78 (61%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 989 IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTS 1048
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA V
Sbjct: 1049 FLLHDRLFNCSDRSVAQV 1066
Score = 92 (37.4 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 24 DIQVKSRPSDDMLNF-GKIQSKSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSND 81
D +V + D L F G + K GD G + G H K+ E +V + + SN+
Sbjct: 797 DPKVMGKLDADGLPFIGSVL-KYGDPFYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNE 855
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F + + V + +GDKF+S HGQKG+L L
Sbjct: 856 TGTGRFKRICVTSRVP--RNPTIGDKFASRHGQKGILSRL 893
Score = 70 (29.7 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
C +CN +D I +VPY K EL+ +M I +K D +
Sbjct: 1095 CLLCNKSDSIETVSVPYVFKYFVAELA-AMNIKIKLDVK 1132
Score = 51 (23.0 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDI-VIGK 52
+N++S E G YK E+ + +VK DD + FG K GD V+GK
Sbjct: 757 VNKSSWERGFAHGSVYKTEIIDLSEKVKG---DDSIVFGV---KPGDPKVMGK 803
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 163 (62.4 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 781 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 840
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 841 FLLHDRLFNCSDRSVAHV 858
Score = 97 (39.2 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSND 81
D +V + DD L F + + GD Y + S + K E +V + + SND
Sbjct: 589 DPRVLQKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSND 647
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V I ++ + + +GDKF+S HGQKG+L L
Sbjct: 648 TGSGKFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRL 685
Score = 59 (25.8 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 887 CTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 922
Score = 49 (22.3 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ K + D L FG K GD
Sbjct: 548 VNKASWERGFAHGSVYKSEFI--DLSEKIKQGDSSLVFG---IKPGD 589
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 163 (62.4 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 809 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 868
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 869 FLLHDRLFNCSDRSVAHV 886
Score = 97 (39.2 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSND 81
D +V + DD L F + + GD Y + S + K E +V + + SND
Sbjct: 617 DPRVLQKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSND 675
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V I ++ + + +GDKF+S HGQKG+L L
Sbjct: 676 TGSGKFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRL 713
Score = 59 (25.8 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 915 CTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 950
Score = 49 (22.3 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ K + D L FG K GD
Sbjct: 576 VNKASWERGFAHGSVYKSEFI--DLSEKIKQGDSSLVFG---IKPGD 617
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 164 (62.8 bits), Expect = 4.9e-16, Sum P(3) = 4.9e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1051
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 1052 FLLHDRLFNCSDRSVAHV 1069
Score = 96 (38.9 bits), Expect = 4.9e-16, Sum P(3) = 4.9e-16
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSND 81
D +V + +D L F Q K GD Y + + K E +V + + SND
Sbjct: 800 DPRVLQKLDNDGLPFIGAQLKYGDPYYS-YLNLNTGEGFVMYYKSKENCIVDNIKVCSND 858
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V I ++ + + +GDKF+S HGQKG+L L
Sbjct: 859 TGTGKFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRL 896
Score = 60 (26.2 bits), Expect = 4.9e-16, Sum P(3) = 4.9e-16
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I ++PY + EL+ +M I +K D
Sbjct: 1098 CALCNRSDTIDTISLPYVFRYFVAELA-AMNIKVKLD 1133
Score = 52 (23.4 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ + + DD L FG K GD
Sbjct: 759 VNKASWERGFAHGSVYKSEFI--DLSERIKQGDDSLVFGV---KPGD 800
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 163 (62.4 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1051
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 1052 FLLHDRLFNCSDRSVAHV 1069
Score = 97 (39.2 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSND 81
D +V + DD L F + + GD Y + S + K E +V + + SND
Sbjct: 800 DPRVLQKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSND 858
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V I ++ + + +GDKF+S HGQKG+L L
Sbjct: 859 TGSGKFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRL 896
Score = 59 (25.8 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
Score = 49 (22.3 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ K + D L FG K GD
Sbjct: 759 VNKASWERGFAHGSVYKSEFI--DLSEKIKQGDSSLVFG---IKPGD 800
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 163 (62.4 bits), Expect = 7.3e-16, Sum P(3) = 7.3e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 1030 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1089
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 1090 FLLHDRLFNCSDRSVAHV 1107
Score = 97 (39.2 bits), Expect = 7.3e-16, Sum P(3) = 7.3e-16
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSND 81
D +V + DD L F + + GD Y + S + K E +V + + SND
Sbjct: 838 DPRVLQKLDDDGLPFIGAKLQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSND 896
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V I ++ + + +GDKF+S HGQKG+L L
Sbjct: 897 TGSGKFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRL 934
Score = 59 (25.8 bits), Expect = 7.3e-16, Sum P(3) = 7.3e-16
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1136 CTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1171
Score = 49 (22.3 bits), Expect = 5.6e-11, Sum P(3) = 5.6e-11
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ K + D L FG K GD
Sbjct: 797 VNKASWERGFAHGSVYKSEFI--DLSEKIKQGDSSLVFG---IKPGD 838
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 164 (62.8 bits), Expect = 9.9e-16, Sum P(3) = 9.9e-16
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1051
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA+V
Sbjct: 1052 FLLHDRLFNCSDRSVAHV 1069
Score = 94 (38.1 bits), Expect = 9.9e-16, Sum P(3) = 9.9e-16
Identities = 31/100 (31%), Positives = 47/100 (47%)
Query: 24 DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSND 81
D ++ + DD L F + + GD Y + S K E +V + + SND
Sbjct: 800 DPRILQKLDDDGLPFIGARLQYGDPYYS-YLNLNTGESFVTYYKSKENCIVDNIKVCSND 858
Query: 82 DGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F V I ++ + + +GDKF+S HGQKG+L L
Sbjct: 859 TGNGRFKCVCI--TMRVPRNPTIGDKFASRHGQKGILSRL 896
Score = 59 (25.8 bits), Expect = 9.9e-16, Sum P(3) = 9.9e-16
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
Score = 55 (24.4 bits), Expect = 9.2e-12, Sum P(3) = 9.2e-12
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ K + DD L FG K GD
Sbjct: 759 VNKASWERGFAHGSVYKSEFI--DLSEKIKQGDDSLVFGV---KPGD 800
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 159 (61.0 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTS 1051
Query: 267 GNLHERL-KC--KNVANV 281
LH+RL C ++VA++
Sbjct: 1052 FLLHDRLFNCSDRSVAHM 1069
Score = 97 (39.2 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 37/118 (31%), Positives = 54/118 (45%)
Query: 13 SESYKAEVDNK-------DIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEI--GADHSIK 63
SE +K DN D +V + DD L F + + GD Y + G +
Sbjct: 782 SEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYS-YLNLNTGEGFVVY 840
Query: 64 LKHTERGLVLKVLLSSNDDGKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
K E +V + + SND G F + I +V + + +GDKF+S HGQKG+L L
Sbjct: 841 YKSKENCVVDNIKVCSNDMGSGKFKCICI--TVRIPRNPTIGDKFASRHGQKGILSRL 896
Score = 59 (25.8 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
Score = 50 (22.7 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGD 47
+N+AS E G YK+E D+ K + +D L FG K GD
Sbjct: 759 VNKASWERGFAHGSVYKSEFI--DLSEKFKQGEDNLVFGV---KPGD 800
Score = 37 (18.1 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 29 SRPSDDMLNFGKIQSKSG 46
+RP + +L G ++SK+G
Sbjct: 427 TRPFEYLLATGNLRSKTG 444
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 180 (68.4 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 48/122 (39%), Positives = 62/122 (50%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF FYQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI +GAS
Sbjct: 1479 IFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGAS 1538
Query: 267 GNLHERLKCKNVANVIQRV-----VGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSM 320
+ ERL + + +G YC+ C S+ DI +PY KLL QEL +M
Sbjct: 1539 ALIMERLMISSDRFTVYACKNCGFLGYEGYCQYCKSSVDISTIQIPYACKLLFQELQ-AM 1597
Query: 321 GI 322
I
Sbjct: 1598 NI 1599
Score = 94 (38.1 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 34/105 (32%), Positives = 50/105 (47%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYA-----------EIGADHSIK-----LKHTERGLVLKV 75
SD + G++ K G I++ KY+ E+ D + K K+ + KV
Sbjct: 1288 SDGIAKPGELAQK-GQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKV 1346
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
LL+S DD + + I+ + LGDKFSS HGQKGV G +
Sbjct: 1347 LLTSGDDEQ----LLIKMLMRSTRRPELGDKFSSRHGQKGVCGII 1387
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 170 (64.9 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 290 LEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIG 349
Query: 263 HGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A + ++G +C C S+ + +PY KLL QEL
Sbjct: 350 YGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQEL 409
Query: 317 SFSMGI 322
SM I
Sbjct: 410 Q-SMNI 414
Score = 87 (35.7 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 145 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 200
Query: 119 FLEQTPAQLLEAALGKGAC-DGLMS-YATPFATSTGGVI 155
+ P + + G C D +M+ + P + G +I
Sbjct: 201 LI--VPQEDMPFC-DSGICPDIIMNPHGFPSRMTVGKLI 236
Score = 53 (23.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 118 GFLEQ-TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR-- 173
GF + T +L+E GK G DG Y T F G + + + V N +G
Sbjct: 225 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG---GSKVKDVCEDLVRHGYNYLGKDYV 281
Query: 174 NSGIT 178
SGIT
Sbjct: 282 TSGIT 286
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 170 (64.9 bits), Expect = 8.1e-15, Sum P(3) = 8.1e-15
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 997 LEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIG 1056
Query: 263 HGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A + ++G +C C S+ + +PY KLL QEL
Sbjct: 1057 YGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQEL 1116
Query: 317 SFSMGI 322
SM I
Sbjct: 1117 Q-SMNI 1121
Score = 85 (35.0 bits), Expect = 8.1e-15, Sum P(3) = 8.1e-15
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D + K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 852 DVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 907
Query: 119 FL 120
+
Sbjct: 908 LI 909
Score = 52 (23.4 bits), Expect = 8.1e-15, Sum P(3) = 8.1e-15
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 118 GFLEQ-TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR-- 173
GF + T +L+E GK G DG Y T F G + + + + N +G
Sbjct: 932 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG---GSKVKDVCEDLIRHGYNYLGKDYV 988
Query: 174 NSGIT 178
SGIT
Sbjct: 989 TSGIT 993
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 194 (73.4 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 67/197 (34%), Positives = 94/197 (47%)
Query: 123 TPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA--RNSGITF 179
T A LLE+ KG + G ATPF + E+ +S S L++ +G+ + G
Sbjct: 942 TIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEE-ESKSSLLVDDLGSMLKEKG--- 997
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
F HY L+ + + C IF +YQ+ HM DK + R+TG LT +
Sbjct: 998 -FNHYGTETLYSGYLG-VELKCE----IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQ 1051
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADD 299
P+ RKR GGI FGEM+ D L+AHGAS LH+RL + ++ C +C S
Sbjct: 1052 PIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIAD------VCSLCGSLLT 1105
Query: 300 IIKANVPYGAKLLSQEL 316
NV K L QE+
Sbjct: 1106 SSVVNVQQ--KKLIQEI 1120
Score = 67 (28.6 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 92 RQSVNMVHSA--CLGDKFSSMHGQKGV 116
R ++ H+ +GDKFSS HGQKGV
Sbjct: 882 RANIRFRHARNPIIGDKFSSRHGQKGV 908
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 163 (62.4 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 40/94 (42%), Positives = 51/94 (54%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+R I+ +YQ+ HM DK + R+TG LT +PV RKR GGI GEM+ D LI
Sbjct: 996 LRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIG 1055
Query: 263 HGASGNLHERLKCKNVANVIQRVVGGPYCRICNS 296
HG S L +RL N ++ Q P CR C S
Sbjct: 1056 HGTSFLLQDRLL--NCSDYTQT----PVCRSCGS 1083
Score = 89 (36.4 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 23/89 (25%), Positives = 37/89 (41%)
Query: 28 KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFA 87
K + D L ++ + GD ++ Y + +K H+ ++ + DD
Sbjct: 812 KEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQE 871
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGV 116
I + +GDKFSS HGQKGV
Sbjct: 872 GQQITIKYRITRQPLIGDKFSSRHGQKGV 900
Score = 53 (23.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 298 DDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
DD +P+ K L ELS +MGI ++++ +
Sbjct: 1134 DDTTTVAIPFVLKYLDSELS-AMGIKMRYNVE 1164
Score = 42 (19.8 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG-FL 120
K + +VL V L +N D + IR+ ++V C D + Q+ +LG FL
Sbjct: 330 KEVLKRIVL-VHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFL 385
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 170 (64.9 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 994 LEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIG 1053
Query: 263 HGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A + ++G +C C S+ + +PY KLL QEL
Sbjct: 1054 YGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQEL 1113
Query: 317 SFSMGI 322
SM I
Sbjct: 1114 Q-SMNI 1118
Score = 90 (36.7 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 39/140 (27%), Positives = 65/140 (46%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V+NK + V KS P+ + ++ G +Y E+ + K + KV++
Sbjct: 816 KVENKQVLVNKSMPTVTQTPL-EGSAQPGQ---PQYREV----PVSYKGATDSYIEKVMI 867
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 137
SSN + + +RQ+ +GDKFSS HGQKGV G + P + + G C
Sbjct: 868 SSNAEDAFLVKILLRQT----RRPEIGDKFSSRHGQKGVCGLI--VPQEDMPFC-DSGIC 920
Query: 138 -DGLMS-YATPFATSTGGVI 155
D +M+ + P + G +I
Sbjct: 921 PDIIMNPHGYPSRMTVGKLI 940
Score = 47 (21.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 123 TPAQLLEAALGK-GACDGLMSYATPFATS 150
T +L+E GK G DG Y T F S
Sbjct: 935 TVGKLIELLAGKAGVLDGRFHYGTAFGGS 963
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 171 (65.3 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 998 LEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIG 1057
Query: 263 HGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A + ++G +C C S+ + +PY KLL QEL
Sbjct: 1058 YGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHFCKSSCHVSSLRIPYACKLLFQEL 1117
Query: 317 SFSMGI 322
SM I
Sbjct: 1118 Q-SMNI 1122
Score = 87 (35.7 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 908
Query: 119 FLEQTPAQLLEAALGKGAC-DGLMS-YATPFATSTGGVI 155
+ P + + G C D +M+ + P + G +I
Sbjct: 909 LI--VPQEDMPFC-DSGICPDIIMNPHGFPSRMTVGKLI 944
Score = 53 (23.7 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 118 GFLEQ-TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR-- 173
GF + T +L+E GK G DG Y T F G + + + V N +G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG---GSKVKDVCEDLVRHGYNYLGKDYV 989
Query: 174 NSGIT 178
SGIT
Sbjct: 990 TSGIT 994
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 176 (67.0 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 48/132 (36%), Positives = 68/132 (51%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
V + IF +YQ+ HM DK+ R +G +T +P + + GG+ GEM+ DCLIA
Sbjct: 1022 VEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIA 1081
Query: 263 HGASGNLHERLKCKNVANVIQ--RVVG--GPY--------CRICNSADDIIKANVPYGAK 310
+GAS ++ERL + +Q R G G Y C C + D+I +PY K
Sbjct: 1082 YGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACK 1141
Query: 311 LLSQELSFSMGI 322
LL QEL SM +
Sbjct: 1142 LLFQELQ-SMNV 1152
Score = 81 (33.6 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 68 ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ 122
E +V +V L S+ G+ + I+ + LGDKFSS HGQKGV G + Q
Sbjct: 881 ETQVVDRVALCSDKKGQ----LCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQ 931
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 170 (64.9 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 998 LEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIG 1057
Query: 263 HGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A + ++G +C C S+ + +PY KLL QEL
Sbjct: 1058 YGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQEL 1117
Query: 317 SFSMGI 322
SM I
Sbjct: 1118 Q-SMNI 1122
Score = 87 (35.7 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 908
Query: 119 FLEQTPAQLLEAALGKGAC-DGLMS-YATPFATSTGGVI 155
+ P + + G C D +M+ + P + G +I
Sbjct: 909 LI--VPQEDMPFC-DSGICPDIIMNPHGFPSRMTVGKLI 944
Score = 53 (23.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 118 GFLEQ-TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR-- 173
GF + T +L+E GK G DG Y T F G + + + V N +G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG---GSKVKDVCEDLVRHGYNYLGKDFV 989
Query: 174 NSGIT 178
SGIT
Sbjct: 990 TSGIT 994
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 170 (64.9 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 998 LEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIG 1057
Query: 263 HGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A + ++G +C C S+ + +PY KLL QEL
Sbjct: 1058 YGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQEL 1117
Query: 317 SFSMGI 322
SM I
Sbjct: 1118 Q-SMNI 1122
Score = 87 (35.7 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 908
Query: 119 FLEQTPAQLLEAALGKGAC-DGLMS-YATPFATSTGGVI 155
+ P + + G C D +M+ + P + G +I
Sbjct: 909 LI--VPQEDMPFC-DSGICPDIIMNPHGFPSRMTVGKLI 944
Score = 53 (23.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 118 GFLEQ-TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR-- 173
GF + T +L+E GK G DG Y T F G + + + V N +G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG---GSKVKDVCEDLVRHGYNYLGKDYV 989
Query: 174 NSGIT 178
SGIT
Sbjct: 990 TSGIT 994
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 170 (64.9 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 998 LEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIG 1057
Query: 263 HGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A + ++G +C C S+ + +PY KLL QEL
Sbjct: 1058 YGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQEL 1117
Query: 317 SFSMGI 322
SM I
Sbjct: 1118 Q-SMNI 1122
Score = 87 (35.7 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 908
Query: 119 FLEQTPAQLLEAALGKGAC-DGLMS-YATPFATSTGGVI 155
+ P + + G C D +M+ + P + G +I
Sbjct: 909 LI--VPQEDMPFC-DSGICPDIIMNPHGFPSRMTVGKLI 944
Score = 53 (23.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 118 GFLEQ-TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR-- 173
GF + T +L+E GK G DG Y T F G + + + V N +G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG---GSKVKDVCEDLVRHGYNYLGKDYV 989
Query: 174 NSGIT 178
SGIT
Sbjct: 990 TSGIT 994
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 170 (64.9 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I+ +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 998 LEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIG 1057
Query: 263 HGASGNLHERLKCKNVANVIQ-----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+GAS L ERL + A + ++G +C C S+ + +PY KLL QEL
Sbjct: 1058 YGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQEL 1117
Query: 317 SFSMGI 322
SM I
Sbjct: 1118 Q-SMNI 1122
Score = 87 (35.7 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 908
Query: 119 FLEQTPAQLLEAALGKGAC-DGLMS-YATPFATSTGGVI 155
+ P + + G C D +M+ + P + G +I
Sbjct: 909 LI--VPQEDMPFC-DSGICPDIIMNPHGFPSRMTVGKLI 944
Score = 53 (23.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 118 GFLEQ-TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR-- 173
GF + T +L+E GK G DG Y T F G + + + V N +G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG---GSKVKDVCEDLVRHGYNYLGKDYV 989
Query: 174 NSGIT 178
SGIT
Sbjct: 990 TSGIT 994
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 172 (65.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 44/109 (40%), Positives = 60/109 (55%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF I +YQ+ HM DK + R TG P+T +PV RK+ GGI FGEM+ D +IAHG S
Sbjct: 966 IFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTS 1025
Query: 267 GNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 315
L +RL N R V CR C S ++ ++ G+ LL ++
Sbjct: 1026 FVLQDRL-----LNCSDRDVAYA-CRRCGSLLSVLMSSRA-GSHLLKKK 1067
Score = 83 (34.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 70 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
GLV V D G A++ R N + +GDKF+S HGQKG+ FL
Sbjct: 824 GLVRIVEQGEGDSGAKHALIQWRIERNPI----IGDKFASRHGQKGINSFL 870
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 158 (60.7 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM DK + R TG +T +P+ R GGI FGEM+ D L+AHG S
Sbjct: 877 IFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPIKGRNVEGGIRFGEMERDALLAHGTS 936
Query: 267 GNLHERL-KCKN 277
LH+RL C +
Sbjct: 937 FLLHDRLFSCSD 948
Score = 98 (39.6 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 32/99 (32%), Positives = 45/99 (45%)
Query: 24 DIQVKSRPSDDMLNF-GKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDD 82
D VK + D L F G I G ++ ++ E G+V + L SND
Sbjct: 685 DPNVKEKLDADGLPFVGSILQPGDPFYSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDR 744
Query: 83 GKN-FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
G F I +V + + +GDKF+S HGQKG+L L
Sbjct: 745 GTGKFKKACI--TVRVPRNPTVGDKFASRHGQKGILSQL 781
Score = 39 (18.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
C +C D I VP+ + EL+ +M I L+
Sbjct: 982 CMLCGRMDTIQIIPVPHVFRYFLAELA-AMNIKLR 1015
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 155 (59.6 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 34/72 (47%), Positives = 43/72 (59%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + YQ+ HM DK + R TG LTG+PV R + GGI GEM+ D LIAHGA+
Sbjct: 1050 IFIGVVHYQRLRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMERDSLIAHGAA 1109
Query: 267 GNLHERL-KCKN 277
L +RL C +
Sbjct: 1110 YILQDRLMNCSD 1121
Score = 96 (38.9 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 47 DIVIGKYAEI-GADHSIKLKHTERGLVLKVLLSSNDDGKNFA-VVSIRQSVNMVHSACLG 104
D Y + G H +K K +ER + + + ++ G A +S++ + +G
Sbjct: 881 DATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPAQAISVKYRIP--RKPIIG 938
Query: 105 DKFSSMHGQKGV 116
DKFSS HGQKGV
Sbjct: 939 DKFSSRHGQKGV 950
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 148 (57.2 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 34/71 (47%), Positives = 43/71 (60%)
Query: 205 SLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF--GGIEFGEMKCDCLIA 262
S IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IA
Sbjct: 1039 SQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRRSDGGLRFGEMERDCQIA 1098
Query: 263 HGASGNLHERL 273
HGA+ L ERL
Sbjct: 1099 HGAAQFLKERL 1109
Score = 102 (41.0 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+++ N +G F + +R SV + +GDKF+S HGQKG G
Sbjct: 891 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVR-SVRIPQ---IGDKFASRHGQKGTCG 946
Score = 41 (19.5 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK 23
MN+++++ G FRS SYK + K
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKK 821
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 152 (58.6 bits), Expect = 8.3e-13, Sum P(4) = 8.3e-13
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + YQ+ HM DK + R+TG+ + T +P+ RKR GG+ FGEM+ D LI+HGA+
Sbjct: 983 IFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAA 1042
Query: 267 GNLHERL 273
L +RL
Sbjct: 1043 FLLQDRL 1049
Score = 64 (27.6 bits), Expect = 8.3e-13, Sum P(4) = 8.3e-13
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 274 KCKNVANVIQRVV-----GG----P-YCRICNSADDIIKANVPYGAKLLSQELSFSMGIT 323
KC ++ +QR+V GG P CR+C + +P+ K L ELS S+ I
Sbjct: 1063 KCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELS-SVNIN 1121
Query: 324 LKF 326
+F
Sbjct: 1122 ARF 1124
Score = 64 (27.6 bits), Expect = 8.3e-13, Sum P(4) = 8.3e-13
Identities = 28/117 (23%), Positives = 50/117 (42%)
Query: 12 RSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGL 71
+ SY A + +K +D + + G S + E+ +K+ E +
Sbjct: 781 KKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCI 840
Query: 72 VLKVL-LSSND-DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQ 126
V + L S D K +++R + A +GDKF+S GQKG+ ++ PA+
Sbjct: 841 VESIRQLGSFDLSPKKMVAITLR----VPRPATIGDKFASRAGQKGICS--QKYPAE 891
Score = 47 (21.6 bits), Expect = 8.3e-13, Sum P(4) = 8.3e-13
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 118 GFLEQ-TPAQLLEAALGKGAC-DGLMSYATPFATS 150
GF + T A ++E GKGA G + ATPF S
Sbjct: 910 GFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS 944
Score = 39 (18.8 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 80 NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDG 139
+DD +F +R+ V M+H DKF ++ F+ Q +L + A GK +
Sbjct: 320 DDDVTDFI---LRERV-MIHLDTYEDKFQ-------LIVFMIQ---KLFQCAQGKYKVEN 365
Query: 140 LMSYATPFATSTGGV----ITEQHQSFVSQLLNCI 170
+ S G + ++E+ +S+VSQ+ C+
Sbjct: 366 VDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCL 400
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 165 (63.1 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 40/94 (42%), Positives = 53/94 (56%)
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+R+ I+ + +YQ+ HM DK + R+TG LT +PV RKR GGI GEM+ D LI
Sbjct: 1022 LRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIG 1081
Query: 263 HGASGNLHERLKCKNVANVIQRVVGGPYCRICNS 296
HG S L +RL N ++ Q V CR C S
Sbjct: 1082 HGTSFLLQDRLL--NSSDYTQASV----CRECGS 1109
Score = 78 (32.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 44 KSGDIVIGKYAEIGADHSIKLKHT-ERGLVLKVLLSSNDDGK--NFAVVSIRQSVNMVHS 100
+ GD + + + IK H+ E + +V L ++ K VSI+ +
Sbjct: 853 EEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQ 912
Query: 101 ACLGDKFSSMHGQKGV 116
+GDKFSS HGQKGV
Sbjct: 913 --IGDKFSSRHGQKGV 926
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 158 (60.7 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM +DK + R G LT +P+ RK GGI FGEM+ D L+AHGAS
Sbjct: 992 IFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGAS 1051
Query: 267 GNLHERL-KCKNVANVIQRVVGGPYCRICNS 296
L++RL K + A + +V C++C S
Sbjct: 1052 FCLNDRLMKSSDFAKI--KV-----CKLCGS 1075
Score = 74 (31.1 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 78 SSNDDGK-NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
++ D K N V +R + N V +GDKFSS HGQKGVL L
Sbjct: 857 ATRDPSKINNICVKLRFNRNPV----IGDKFSSRHGQKGVLSQL 896
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 146 (56.5 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 37/110 (33%), Positives = 62/110 (56%)
Query: 216 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC 275
+ IH+ EDKV R TG + ++ +P+ + +FGG FGEM+ + A+G + NL E L
Sbjct: 1093 KLIHLVEDKVHARATGPYSLISQQPLGGKAQFGGQRFGEMEVWAMYAYGTAHNLQEMLTI 1152
Query: 276 KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
K+ ++ R Y I +D+I+ VP K+L +EL S+G+ ++
Sbjct: 1153 KS-DDIAGRAKA--YESIVKG-EDVIQPGVPESFKVLVKELQ-SLGLAVE 1197
Score = 87 (35.7 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 39/155 (25%), Positives = 67/155 (43%)
Query: 18 AEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVL 76
AEV DI V K P + + K + G+ A D S+++ H E G V+ V
Sbjct: 803 AEVGPDDILVGKITPKGETEL--SAEEKLLRAIFGEKAREVKDTSLRMPHGEWGKVINVR 860
Query: 77 LSSNDDGKNF-AVVS--IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALG 133
+ S ++G + A V+ ++ V +GDK + HG KGV+ + P + +
Sbjct: 861 VFSRENGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGNKGVISII--APVEDMPYLPD 918
Query: 134 KGACDGLMS-YATPFATSTGGVITEQHQSFVSQLL 167
D +++ P + G ++ E H + LL
Sbjct: 919 GTPVDVVLNPIGVPSRMNLGQIL-ETHLGWAGHLL 952
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 133 (51.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TG + +T +P+ + +FGG FGEM+C + A+GA+ L E L K+
Sbjct: 1026 HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKS- 1084
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ + RV Y I ++I + +P K+L +EL
Sbjct: 1085 DDTVGRVK--VYEAIVKG-ENIPEPGIPESFKVLLKEL 1119
Score = 88 (36.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKV-LLSSNDDGKNFAVVS--IRQSVNMVHSACLGD 105
+ G+ A D S+K+ H E G V+ + + S DD + A V+ +R V GD
Sbjct: 815 IFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGD 874
Query: 106 KFSSMHGQKGVLG 118
K + HG KGV+G
Sbjct: 875 KLAGRHGNKGVIG 887
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 138 (53.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TG + +T +P+ + +FGG FGEM+ L A+GA+ L E L K+
Sbjct: 969 HLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKS- 1027
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
+V+ RV Y I ++I + VP K+L +EL S+G+ +K
Sbjct: 1028 DDVVGRVK--TYEAIVKG-ENIPEPGVPESFKVLIKELQ-SLGLDVK 1070
Score = 82 (33.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAV---VSIRQSVNMVHSACLGD 105
+ G+ A D S+++ H E G V+ V + S ++G + + +R + +GD
Sbjct: 791 IFGEKAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGD 850
Query: 106 KFSSMHGQKGVL 117
K + HG KGV+
Sbjct: 851 KMAGRHGNKGVV 862
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 133 (51.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TG + +T +P+ + +FGG FGEM+C + A+GA+ L E L K+
Sbjct: 1035 HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKS- 1093
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ + RV Y I ++I + +P K+L +EL
Sbjct: 1094 DDTVGRVK--VYEAIVKG-ENIPEPGIPESFKVLLKEL 1128
Score = 85 (35.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNF-AVVS--IRQSVNMVHSACLGD 105
+ G+ A D S+K+ H E G V+ + + S +D A V+ +R V GD
Sbjct: 824 IFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGD 883
Query: 106 KFSSMHGQKGVLG 118
K + HG KGV+G
Sbjct: 884 KLAGRHGNKGVIG 896
Score = 37 (18.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/119 (23%), Positives = 50/119 (42%)
Query: 25 IQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSN---- 80
I+V SR +D L G ++ + + + +I + +H +G++ K+L +
Sbjct: 850 IRVFSREDEDELPAGV--NELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL 907
Query: 81 DDGK------NFAVVSIRQSVNMVHSACLGDKFSS---MHGQKGVLGFLEQTPAQLLEA 130
DG N V R ++ + LG S + KGV + + P +LLEA
Sbjct: 908 ADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 966
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 139 (54.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 39/115 (33%), Positives = 65/115 (56%)
Query: 211 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 270
+ + + HM +DK+ R+TG + +T +P+ + +FGG FGEM+ L A+GA+ L
Sbjct: 1033 VMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1092
Query: 271 ERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
E L K+ +VI RV Y I +++ + VP K+L +EL S+G+ +K
Sbjct: 1093 EILTVKS-DDVIGRVK--TYEAIVKG-ENVPEPGVPESFKVLIKELQ-SLGMDVK 1142
Score = 76 (31.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAV-VS--IRQSVNMVHSACLGD 105
+ G+ A D S+++ H G++L V + + +DG V+ +R + GD
Sbjct: 863 IFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGD 922
Query: 106 KFSSMHGQKGVL 117
K + HG KGV+
Sbjct: 923 KMAGRHGNKGVI 934
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 137 (53.3 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM+ DK + R TG LT +P+ +++ GGI GEM+ D +I+HG S
Sbjct: 1361 IFIGVIYYQRLRHMAYDKAQVRRTGPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCS 1420
Query: 267 GNLHER 272
++ER
Sbjct: 1421 FVINER 1426
Score = 67 (28.6 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 75 VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
V + N+ + AVV +R + +GDKF+S HGQKGV+ L
Sbjct: 1137 VSIGKNNSNQ-VAVVKLRST----RQPQVGDKFASRHGQKGVVSRL 1177
Score = 50 (22.7 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 1 MNQASLECGVFRSESYKAE 19
+N+AS + G+FR+ YK E
Sbjct: 1033 INKASADRGIFRTHIYKTE 1051
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 137 (53.3 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF + +YQ+ HM+ DK + R TG LT +P+ +++ GGI GEM+ D +I+HG S
Sbjct: 1361 IFIGVIYYQRLRHMAYDKAQVRRTGPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCS 1420
Query: 267 GNLHER 272
++ER
Sbjct: 1421 FVINER 1426
Score = 67 (28.6 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 75 VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
V + N+ + AVV +R + +GDKF+S HGQKGV+ L
Sbjct: 1137 VSIGKNNSNQ-VAVVKLRST----RQPQVGDKFASRHGQKGVVSRL 1177
Score = 50 (22.7 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 1 MNQASLECGVFRSESYKAE 19
+N+AS + G+FR+ YK E
Sbjct: 1033 INKASADRGIFRTHIYKTE 1051
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 131 (51.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 36/112 (32%), Positives = 59/112 (52%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ DK+ R+ GS+ +T +P+ + FGG FGEM+C L A+GA+ L E L K+
Sbjct: 1236 HLVNDKIHARSIGSYSLITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKS- 1294
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
+V+ RV Y I +D VP ++ EL ++ + ++F + L
Sbjct: 1295 DDVVGRV--NVYDSIVRGDNDFYYG-VPESFNVMMNELR-ALCLNVEFCSDL 1342
Score = 62 (26.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQ 126
+ +DD ++ ++ V + H+ GDK S HG KGV+ + PA+
Sbjct: 1038 IRGDDDLAQGVLMVVKVFVAVKHTLQPGDKMSGRHGNKGVISRI--VPAE 1085
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 134 (52.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+ G + +T +P+ + FGG FGEM+C L A+GA+ L E L K+
Sbjct: 1269 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKS- 1327
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQLS 331
+++ RV Y I D + +P ++ +EL S + + LK D + +
Sbjct: 1328 DDIVGRV--RIYESIIKG-DSNFECGIPESFNVMVKELRSLCLDVVLKQDKEFT 1378
Score = 54 (24.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 40 KIQSKSGDIVIGKYAEIGAD-HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 98
KI +K D+ GK+ E+ + HS K ++ + K L+ D + ++ V +
Sbjct: 1037 KISAKVADMK-GKFDELITEAHS---KFDQK--IDK--LNYGYDLPQGVLTIVKVFVAVK 1088
Query: 99 HSACLGDKFSSMHGQKGVL 117
H+ GDK + HG KGV+
Sbjct: 1089 HNLQPGDKMAGRHGNKGVI 1107
Score = 41 (19.5 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 138 DGLMSYATPFATSTG 152
DGL Y PFA +G
Sbjct: 305 DGLREYLVPFAGISG 319
Score = 41 (19.5 bits), Expect = 9.6e-05, Sum P(3) = 9.6e-05
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKLK 65
+ SG +++ I A+H +KL+
Sbjct: 327 VDPASGAVIVSAGEAIAAEHIVKLE 351
Score = 40 (19.1 bits), Expect = 9.6e-05, Sum P(3) = 9.6e-05
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 118 GFLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 169
GF+E ++++ + L + + + + G +++ FV +L C
Sbjct: 610 GFIESPYRKVIDGVVTDSVEYLLATQESDYYIADAGAALDENNRFVDDMLYC 661
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 132 (51.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+ G + +T +P+ + FGG FGEM+C L A+GA+ L E L K+
Sbjct: 1265 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKS- 1323
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 327
+++ RV Y I D + +P ++ +EL S + + LK D
Sbjct: 1324 DDIVGRVK--IYESIIKG-DSNFECGIPESFNVMVKELRSLCLDVALKQD 1370
Score = 52 (23.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVL 117
++ V + H+ GDK + HG KGV+
Sbjct: 1079 VKVFVAVKHNLQPGDKMAGRHGNKGVI 1105
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 125 (49.1 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 35/111 (31%), Positives = 61/111 (54%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TGS+ +T +P+ + +FGG FGEM+ L A+GA+ L E L K+
Sbjct: 1240 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS- 1298
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+V R Y I + + + +P +L +E+ S+GI ++ D +
Sbjct: 1299 DDVNGRTQ--MYKNIVDGNHQM-QPGMPESFNVLLKEIR-SLGINIELDQE 1345
Score = 52 (23.4 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 23/113 (20%), Positives = 48/113 (42%)
Query: 6 LECGVF-RSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKL 64
LE GV R+ + + Q+ + P D+L I ++ + + AE +K
Sbjct: 968 LEEGVLSRARNLLLSAGFSEAQIAALPRKDVL-VQVIDDEAKQTELEQLAE--QHEELKA 1024
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 117
++ + + ++ DD + ++ + + + GDK + HG KGV+
Sbjct: 1025 DFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVI 1077
Score = 47 (21.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 13 SESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG 57
SE A++ N S+ + + + + K GDI++GK G
Sbjct: 848 SEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 129 (50.5 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 35/109 (32%), Positives = 61/109 (55%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TGS+ +T +P+ + +FGG FGEM+ L A+GA+ L E L K+
Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS- 1295
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
+V R Y + + D ++ +P +L +E+ S+GI ++ D
Sbjct: 1296 DDVNGRTK--MYKNLVDG-DHRMEPGIPESFNVLLKEIR-SLGINIELD 1340
Score = 48 (22.0 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 104 GDKFSSMHGQKGVL 117
GDK + HG KGV+
Sbjct: 1064 GDKMAGRHGNKGVI 1077
Score = 39 (18.8 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 13 SESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG 57
SE A++ N S+ + + + + GDI++GK G
Sbjct: 848 SEEITADIPNVGESALSKLDEAGVVYIGAEVNGGDILVGKVTPKG 892
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 123 (48.4 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TGS+ +T +P+ + +FGG FGEM+ L A+GA+ L E L K+
Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS- 1294
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+V R Y I + + ++ +P +L +E+ S+GI ++ + +
Sbjct: 1295 DDVNGRTK--MYKNIVDG-NHAMEPGMPESFNVLLKEIR-SLGINIELEDE 1341
Score = 48 (22.0 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 104 GDKFSSMHGQKGVL 117
GDK + HG KGV+
Sbjct: 1063 GDKMAGRHGNKGVI 1076
Score = 43 (20.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 13 SESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG 57
+E A++ N S+ + + + + K GDI++GK G
Sbjct: 847 AEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 123 (48.4 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TGS+ +T +P+ + +FGG FGEM+ L A+GA+ L E L K+
Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS- 1294
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+V R Y I + + ++ +P +L +E+ S+GI ++ + +
Sbjct: 1295 DDVNGRTK--MYKNIVDG-NHAMEPGMPESFNVLLKEIR-SLGINIELEDE 1341
Score = 48 (22.0 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 104 GDKFSSMHGQKGVL 117
GDK + HG KGV+
Sbjct: 1063 GDKMAGRHGNKGVI 1076
Score = 43 (20.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 13 SESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG 57
+E A++ N S+ + + + + K GDI++GK G
Sbjct: 847 AEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 125 (49.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 37/110 (33%), Positives = 61/110 (55%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TGS+ +T +P+ + +FGG FGEM+ L A+GA+ L E L K+
Sbjct: 1270 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS- 1328
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 327
+V R Y I + D + A +P +L +E+ S ++ I L+ D
Sbjct: 1329 DDVAGRT--RMYKNIVDG-DHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1375
Score = 48 (22.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 104 GDKFSSMHGQKGVL 117
GDK + HG KGV+
Sbjct: 1098 GDKMAGRHGNKGVI 1111
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 107 (42.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 213 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
+Y + IHM +DK ++R G + LT +P+ + GG FGEM+ L A GAS
Sbjct: 896 YYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEAFGAS 949
Score = 63 (27.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 70 GLVLKV-LLSS---NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ 122
G V+K+ +L + N KN + R + + LGDK + HG KG++ ++ +
Sbjct: 730 GRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGDKICNRHGHKGIISYISE 786
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 123 (48.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 34/115 (29%), Positives = 61/115 (53%)
Query: 211 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 270
I + + H+ +DK+ R+TG + +T +P+ + +FGG FGEM+ L A+GA+ L
Sbjct: 1261 IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1320
Query: 271 ERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
E L K+ +V R Y I D+ +A +P +L +E+ +G+ ++
Sbjct: 1321 EMLTVKS-DDVAGRTK--VYESIVKGEDNF-EAGIPESFNVLVKEVR-GLGLNME 1370
Score = 48 (22.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 104 GDKFSSMHGQKGVL 117
GDK + HG KGV+
Sbjct: 1095 GDKMAGRHGNKGVI 1108
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 121 (47.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 34/111 (30%), Positives = 61/111 (54%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ +DK+ R+TGS+ +T +P+ + +FGG FGEM+ L A+GA+ L E L K+
Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS- 1295
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+V R Y I + + + +P +L +E+ S+GI ++ + +
Sbjct: 1296 DDVNGRTK--MYKNIVDGNHQM-EPGMPESFNVLLKEIR-SLGINIELEDE 1342
Score = 48 (22.0 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 104 GDKFSSMHGQKGVL 117
GDK + HG KGV+
Sbjct: 1063 GDKMAGRHGNKGVI 1076
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 114 (45.2 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 34/110 (30%), Positives = 58/110 (52%)
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNV 278
H+ ++KV R+TG + +T +PV + FGG FGEM+ L A+GA+ L E L K+
Sbjct: 1268 HLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKS- 1326
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 327
+V R Y + +++ +P +L+ EL S ++ + + FD
Sbjct: 1327 DDVEGRF--SAY-KALTKGENVPATGIPETFFVLTNELKSLALDVEI-FD 1372
Score = 53 (23.7 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 23/103 (22%), Positives = 41/103 (39%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVS-IRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
+K +H E+ L++L DD V+ ++ + +GDK + HG KG++ +
Sbjct: 1054 LKAEHDEK---LEIL--EKDDILPSGVIKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTI 1108
Query: 121 EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFV 163
+ GK L P + G ++ E H V
Sbjct: 1109 VPE-VDMPYLPNGKSVDIALNPLGVPSRMNIGQIL-ESHLGLV 1149
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 338 338 0.00094 116 3 11 22 0.49 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 80
No. of states in DFA: 611 (65 KB)
Total size of DFA: 228 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.99u 0.17s 27.16t Elapsed: 00:00:02
Total cpu time: 27.00u 0.17s 27.17t Elapsed: 00:00:02
Start: Thu May 9 20:30:49 2013 End: Thu May 9 20:30:51 2013