BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019610
(338 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224141967|ref|XP_002324332.1| predicted protein [Populus trichocarpa]
gi|222865766|gb|EEF02897.1| predicted protein [Populus trichocarpa]
Length = 1160
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 221/403 (54%), Positives = 252/403 (62%), Gaps = 102/403 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVDNK++ K R S+D + FGKIQSK
Sbjct: 788 MNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDDDGFP 847
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDIVIGK AE GADHS+KLKHTERG+V KV+LSSND+GKNFAVVS+RQ
Sbjct: 848 FIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ---- 903
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 904 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAA 963
Query: 132 LGKG-ACDGLMSYATPFAT-STGGVITEQHQSFVSQLLN--CIGARNSGITFIFKHYFLF 187
LGKG AC G YATPF+T S +I + H++ S+ N R
Sbjct: 964 LGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGE----------- 1012
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+VRSLIF TFYQ+ +HM+EDKVKFRNTG PLT +PVADRKRF
Sbjct: 1013 --------------MVRSLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRF 1058
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GGI+FGEM+ DCLIAHGAS NLHERL KCKNVANVIQR V G
Sbjct: 1059 GGIKFGEMERDCLIAHGASANLHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRG 1118
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
PYCR+C S DD++K +VPYGAKLL QEL FSMGI+LKFDT++S
Sbjct: 1119 PYCRVCESVDDLVKVSVPYGAKLLCQEL-FSMGISLKFDTRVS 1160
>gi|255548744|ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
Length = 1203
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 222/402 (55%), Positives = 250/402 (62%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKA+VDNK++ K R DD +NFGKI SK
Sbjct: 831 MNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFP 890
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDIVIG+ AE G DHSIKLKHTERG+V KV+LSSND+GKNFAVVS+RQ
Sbjct: 891 FIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ---- 946
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 947 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAA 1006
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLF 187
LGKG AC G M YATPF+T + IT Q H++ S+ N R
Sbjct: 1007 LGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGE----------- 1055
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+VRSLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRF
Sbjct: 1056 --------------MVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRF 1101
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GGI+FGEM+ DCLIAHGAS NLHERL KCKNVANVIQR V G
Sbjct: 1102 GGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRG 1161
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYCR+C S D+I+K NVPYGAKLL QEL FSMGI+LKF+T+L
Sbjct: 1162 PYCRVCESVDEIVKVNVPYGAKLLCQEL-FSMGISLKFETRL 1202
>gi|449455519|ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1197
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 220/399 (55%), Positives = 249/399 (62%), Gaps = 96/399 (24%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVDNK+ K R SDD +NFGK QSK
Sbjct: 825 MNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFP 884
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDIVIG+ AE GADHSIKLKHTE+G+V KV+LSSNDDGKN+AVVS+RQ
Sbjct: 885 YIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQ---- 940
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 941 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1000
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 190
LGKG A G + YATPF+T + IT+Q L+ G G ++
Sbjct: 1001 LGKGIAAGGSLKYATPFSTPSVDAITDQ--------LHRAGFSRWGSERVYNG------- 1045
Query: 191 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 250
++RSLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGGI
Sbjct: 1046 -------RTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1098
Query: 251 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYC 291
+FGEM+ DCLIAHGAS NLHERL KCKNVA+VIQR V GPYC
Sbjct: 1099 KFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYC 1158
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
R+C S DDI++ NVPYGAKLL QEL FSMGI LKF+TQL
Sbjct: 1159 RVCESFDDIVRVNVPYGAKLLCQEL-FSMGINLKFETQL 1196
>gi|67515338|gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
Length = 1019
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 208/399 (52%), Positives = 247/399 (61%), Gaps = 96/399 (24%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKA+VDNK+ K +D +NFGK+QSK
Sbjct: 647 MNRASLERGMFRSEHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFP 706
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIV+G+ AE GADHSIKLKHTERG+V KV+LS+ND+GKNFAVVS+RQ
Sbjct: 707 FIGANLQNGDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQ---- 762
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 763 VRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAA 822
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 190
LGKG AC GL YATPF+T + +T+Q L+ G G ++
Sbjct: 823 LGKGIACGGLQKYATPFSTLSVDAVTDQ--------LHRAGFSRWGSERVYNG------- 867
Query: 191 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 250
++ SL+F TFYQ+ HMSEDKVKFRNTG PLT +PVADRKRFGGI
Sbjct: 868 -------RTGEMIHSLVFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 920
Query: 251 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYC 291
+FGEM+ DCLIAHGA+ NLHERL KC N+ANVIQR V GPYC
Sbjct: 921 KFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCNNIANVIQRAVPGGRKIRGPYC 980
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
R C S ++I++ NVPYGAKLL+QEL FSMGIT+KFDT+L
Sbjct: 981 RFCESVEEIVRVNVPYGAKLLAQEL-FSMGITMKFDTEL 1018
>gi|225430474|ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 209/400 (52%), Positives = 253/400 (63%), Gaps = 98/400 (24%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYK+EVDN + K R S+D ++FGK+QSK
Sbjct: 826 MNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFP 885
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ AE G DHSIKLKHTERG+V KV++S+NDDGKNFAVVS+RQ
Sbjct: 886 FIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQ---- 941
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 942 VRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1001
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARNSGITFIFKHYFLFCL 189
LGKG AC GL+ +ATPF+T + I +Q H++ S+ + H ++
Sbjct: 1002 LGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSR---------------WGHERVYNG 1046
Query: 190 FECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 249
M +RSLIF TFYQ+ IHM+EDKVKFRNTG PLT +PV+DRKRFGG
Sbjct: 1047 RTGEM--------LRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGG 1098
Query: 250 IEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPY 290
I+FGEM+ DCLIAHGA+ NLHERL +CKN++NVIQR V GPY
Sbjct: 1099 IKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPY 1158
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
CR C S+++I+K NVPYGAKLL QEL FSMGI+LKF+TQL
Sbjct: 1159 CRYCESSEEIVKVNVPYGAKLLCQEL-FSMGISLKFETQL 1197
>gi|357466021|ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1237
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 215/402 (53%), Positives = 248/402 (61%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASL+ G+FRSE SYKAE++NK+ K + +D++NFGKIQSK
Sbjct: 865 MNRASLQRGMFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFP 924
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ A+ G DHSIKLKHTERG V KV+LSSND+GKNFAVVS+RQ
Sbjct: 925 FVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQ---- 980
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S LGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 981 VRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAA 1040
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLF 187
LGKG AC G + ATPF+TS+ IT+Q H++ S+ N R
Sbjct: 1041 LGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGE----------- 1089
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+VRSLIF TFYQ+ HMSEDKVKFRNTG PLT +PVADRKRF
Sbjct: 1090 --------------MVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1135
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GGI+FGEM+ DCLIAHGAS NL+ERL KCKNVANVI R V G
Sbjct: 1136 GGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRG 1195
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYCR C SADDI+ A+VPYGAKLLSQEL FSMGI LKF+T+L
Sbjct: 1196 PYCRFCESADDIVVASVPYGAKLLSQEL-FSMGINLKFETEL 1236
>gi|296082132|emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 209/400 (52%), Positives = 253/400 (63%), Gaps = 98/400 (24%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYK+EVDN + K R S+D ++FGK+QSK
Sbjct: 848 MNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFP 907
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ AE G DHSIKLKHTERG+V KV++S+NDDGKNFAVVS+RQ
Sbjct: 908 FIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQ---- 963
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 964 VRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1023
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARNSGITFIFKHYFLFCL 189
LGKG AC GL+ +ATPF+T + I +Q H++ S+ + H ++
Sbjct: 1024 LGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSR---------------WGHERVYNG 1068
Query: 190 FECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 249
M +RSLIF TFYQ+ IHM+EDKVKFRNTG PLT +PV+DRKRFGG
Sbjct: 1069 RTGEM--------LRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGG 1120
Query: 250 IEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPY 290
I+FGEM+ DCLIAHGA+ NLHERL +CKN++NVIQR V GPY
Sbjct: 1121 IKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPY 1180
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
CR C S+++I+K NVPYGAKLL QEL FSMGI+LKF+TQL
Sbjct: 1181 CRYCESSEEIVKVNVPYGAKLLCQEL-FSMGISLKFETQL 1219
>gi|356518213|ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 215/402 (53%), Positives = 247/402 (61%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASL+ G+FRSE SYK+E+DNK+ K R +D++NF K+QSK
Sbjct: 833 MNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFP 892
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IGK AE GAD+S+KLKHTERG V KV+LSSND+GKNFAVVS+RQ
Sbjct: 893 YVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQ---- 948
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S LGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 949 VRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAA 1008
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLF 187
LGKG AC G++ ATPF+T + ITEQ H++ S+ N R
Sbjct: 1009 LGKGIACGGILRQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGE----------- 1057
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+VRSLIF TFYQ+ HMSEDKVKFRNTG PLT +PVADRKRF
Sbjct: 1058 --------------MVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1103
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GGI+FGEM+ DCLIAHGAS NL+ERL KCKNVANVI R V G
Sbjct: 1104 GGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRG 1163
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYCR C SADDI+ A+VPYGAKLL QEL FSMGI LKF+TQL
Sbjct: 1164 PYCRHCESADDIVVAHVPYGAKLLCQEL-FSMGINLKFETQL 1204
>gi|356509878|ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 349 bits (896), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 214/402 (53%), Positives = 246/402 (61%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASL+ G+FRSE SYK+E+DNK+ K R +D++NF K+QSK
Sbjct: 833 MNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFP 892
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IGK AE GAD+S+KLKHTERG V KV+LSSND+GKNFAVVS+RQ
Sbjct: 893 YVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQ---- 948
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S LGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 949 VRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAA 1008
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSGITFIFKHYFLF 187
LGKG AC G++ ATPF+T + ITEQ H++ S+ N R
Sbjct: 1009 LGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGE----------- 1057
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+VRSLIF TFYQ+ HMSEDKVKFRNTG PLT +PVADRKRF
Sbjct: 1058 --------------MVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1103
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GGI+FGEM+ DCLIAHGAS NL+ERL KCK VANVI R V G
Sbjct: 1104 GGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRG 1163
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYCR C SADDI+ A+VPYGAKLL QEL FSMGI LKF+TQL
Sbjct: 1164 PYCRHCESADDIVVAHVPYGAKLLCQEL-FSMGINLKFETQL 1204
>gi|67515342|gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
Length = 821
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 207/399 (51%), Positives = 243/399 (60%), Gaps = 96/399 (24%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+AS+E G+FR+E SYKAEVDN D K DD+++FGK +SK
Sbjct: 449 MNRASMERGMFRTEHVRSYKAEVDNSDAPGKKLKPDDLVDFGKTESKIGRVDSLDDDGFP 508
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIGK+A G DHSIKLKHTERG+V KV+LSSNDDGKNF VVS+RQ
Sbjct: 509 FIGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDDGKNFGVVSLRQ---- 564
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 565 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKEGIVPDIVINPHAFPSRQTPGQLLEAA 624
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 190
LGKG A G + YATPF+T + IT Q L+ +G G ++
Sbjct: 625 LGKGIALGGALKYATPFSTPSVDDITAQ--------LHRLGFSRWGDERVYDG------- 669
Query: 191 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 250
V SLIF TFYQ+ HM+EDK+KFRNTG PLT +PVADRKRFGGI
Sbjct: 670 -------RTGEKVESLIFMGPTFYQRLTHMAEDKIKFRNTGPVHPLTRQPVADRKRFGGI 722
Query: 251 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYC 291
+FGEM+ DCLIAHGA+ NLHERL KC+N+ANVIQR V GPYC
Sbjct: 723 KFGEMERDCLIAHGAAANLHERLFTLSDSSQMHVCRKCQNMANVIQRSVFGGRKIRGPYC 782
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
R C+S +D+++ NVPYGAKLL QEL FSMGI+LKFDT+L
Sbjct: 783 RFCDSVEDVVRLNVPYGAKLLCQEL-FSMGISLKFDTEL 820
>gi|79416709|ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|75335101|sp|Q9LK40.1|RPD2A_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2a;
Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
AltName: Full=Nuclear RNA polymerase E 2; AltName:
Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2;
AltName: Full=RNA polymerase IV subunit 2a; Short=POL IV
2a
gi|9293951|dbj|BAB01854.1| DNA-directed RNA polymerase, subunit B [Arabidopsis thaliana]
gi|57791156|gb|AAW56422.1| polymerase IV second largest subunit [Arabidopsis thaliana]
gi|62183738|gb|AAX73261.1| RNA polymerase IV second-largest subunit [Arabidopsis thaliana]
gi|332643291|gb|AEE76812.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|332643292|gb|AEE76813.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
Length = 1172
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 206/413 (49%), Positives = 242/413 (58%), Gaps = 114/413 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVD KD + K + D+++ FGK SK
Sbjct: 790 MNKASLERGMFRSEQIRSYKAEVDAKDSE-KRKKMDELVQFGKTHSKIGKVDSLEDDGFP 848
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ
Sbjct: 849 FIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ---- 904
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTP QLLEAA
Sbjct: 905 VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 964
Query: 132 LGKG-ACD-----------GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSG 176
L KG AC L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 965 LSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++RS+IF TFYQ+ +HMSEDKVKFRNTG PL
Sbjct: 1025 -------------------------MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPL 1059
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PVADRKRFGGI+FGEM+ DCLIAHGAS NLHERL KCK ANVI+
Sbjct: 1060 TRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIE 1119
Query: 284 RV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1120 RTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1171
>gi|51970364|dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 639
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 206/413 (49%), Positives = 242/413 (58%), Gaps = 114/413 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVD KD + K + D+++ FGK SK
Sbjct: 257 MNKASLERGMFRSEQIRSYKAEVDAKDSE-KRKKMDELVQFGKTHSKIGKVDSLEDDGFP 315
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ
Sbjct: 316 FIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ---- 371
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTP QLLEAA
Sbjct: 372 VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 431
Query: 132 LGKG-ACD-----------GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSG 176
L KG AC L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 432 LSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE 491
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++RS+IF TFYQ+ +HMSEDKVKFRNTG PL
Sbjct: 492 -------------------------MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPL 526
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PVADRKRFGGI+FGEM+ DCLIAHGAS NLHERL KCK ANVI+
Sbjct: 527 TRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIE 586
Query: 284 RV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 587 RTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTEL 638
>gi|283443700|gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
largest subunit 2-2 [Zea mays]
Length = 1229
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 199/402 (49%), Positives = 242/402 (60%), Gaps = 103/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
MN+ASLE G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 858 MNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLP 916
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ
Sbjct: 917 YVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ---- 972
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 973 VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 1032
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLF 187
LGKG AC G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 1033 LGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGE----------- 1081
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
V+SL+F TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRF
Sbjct: 1082 --------------RVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1127
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GG++FGEM+ DCL+AHG++ NLHERL C+ VANV+ R V G
Sbjct: 1128 GGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRG 1187
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYC C S+++I++ NVPYGAKLL QEL FSMGI LKF+TQ+
Sbjct: 1188 PYCGFCKSSENIVRINVPYGAKLLYQEL-FSMGICLKFETQV 1228
>gi|66356143|gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
Length = 1170
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 199/402 (49%), Positives = 242/402 (60%), Gaps = 103/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
MN+ASLE G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 799 MNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRXDNLDDDGLP 857
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ
Sbjct: 858 YVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ---- 913
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 914 VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 973
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLF 187
LGKG AC G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 974 LGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGE----------- 1022
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
V+SL+F TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRF
Sbjct: 1023 --------------RVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1068
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GG++FGEM+ DCL+AHG++ NLHERL C+ VANV+ R V G
Sbjct: 1069 GGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRG 1128
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYC C S+++I++ NVPYGAKLL QEL FSMGI LKF+TQ+
Sbjct: 1129 PYCGFCKSSENIVRINVPYGAKLLYQEL-FSMGICLKFETQV 1169
>gi|298566250|ref|NP_001177299.1| required to maintain repression7 [Zea mays]
gi|283443696|gb|ADB19857.1| required to maintain repression 7/RNA polymerase D second largest
subunit [Zea mays]
gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1229
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 199/402 (49%), Positives = 242/402 (60%), Gaps = 103/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
MN+ASLE G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 858 MNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLP 916
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ
Sbjct: 917 YVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ---- 972
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 973 VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 1032
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLF 187
LGKG AC G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 1033 LGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGE----------- 1081
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
V+SL+F TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRF
Sbjct: 1082 --------------RVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1127
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GG++FGEM+ DCL+AHG++ NLHERL C+ VANV+ R V G
Sbjct: 1128 GGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRG 1187
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYC C S+++I++ NVPYGAKLL QEL FSMGI LKF+TQ+
Sbjct: 1188 PYCGFCKSSENIVRINVPYGAKLLYQEL-FSMGICLKFETQV 1228
>gi|242041665|ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
gi|241922081|gb|EER95225.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
Length = 1228
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 199/402 (49%), Positives = 242/402 (60%), Gaps = 103/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
MN+ASLE G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 857 MNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLP 915
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ
Sbjct: 916 YIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ---- 971
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 972 VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIVPDIVINPHAFPTRQTPGQLLEAA 1031
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLF 187
LGKG AC G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 1032 LGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGTENVLNGRTGE----------- 1080
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
++SLIF TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRF
Sbjct: 1081 --------------RMQSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1126
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GG++FGEM+ DCL+AHG++ NLHERL C+ VANV+ R V G
Sbjct: 1127 GGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRG 1186
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYC C S+++I++ NVPYGAKLL QEL FSMGI LKFDT++
Sbjct: 1187 PYCGFCKSSENIVRINVPYGAKLLYQEL-FSMGICLKFDTEV 1227
>gi|145338664|ref|NP_188437.2| DNA-directed RNA polymerase II subunit B [Arabidopsis thaliana]
gi|332642524|gb|AEE76045.1| DNA-directed RNA polymerase II subunit B [Arabidopsis thaliana]
Length = 1055
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 206/414 (49%), Positives = 241/414 (58%), Gaps = 115/414 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVD KD + K + D+++ FGK SK
Sbjct: 672 MNKASLERGMFRSEQIRSYKAEVDTKDSE-KRKKMDELVQFGKTYSKIGKVDSLEDDGFP 730
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ
Sbjct: 731 FIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ---- 786
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTP QLLEAA
Sbjct: 787 VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 846
Query: 132 LGKG-ACD------------GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNS 175
L KG AC L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 847 LSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSG 906
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
++RSLIF TFYQ+ +HMSE+KVKFRNTG P
Sbjct: 907 E-------------------------MMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHP 941
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +PVADRKRFGGI FGEM+ DCLIAHGAS NLHERL KCK ANVI
Sbjct: 942 LTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVI 1001
Query: 283 QRV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
+R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1002 ERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1054
>gi|297830452|ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
gi|297328948|gb|EFH59367.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
Length = 1169
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 204/414 (49%), Positives = 241/414 (58%), Gaps = 115/414 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVD KD + K + D+++ FGK SK
Sbjct: 786 MNKASLERGMFRSEQIRSYKAEVDTKDSE-KRKKMDELVKFGKTYSKIGKVDSLEDDGFP 844
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ + GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ
Sbjct: 845 FIGANMSTGDIVIGRCTDSGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ---- 900
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTP QLLEAA
Sbjct: 901 VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 960
Query: 132 LGKG-------------ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNS 175
L KG A L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 961 LSKGIASPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSG 1020
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
++RSLIF TFYQ+ +HMSEDKVKFRNTG P
Sbjct: 1021 E-------------------------MMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHP 1055
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +PVAD+KRFGGI+FGEM+ DCLIAHGAS NLHERL KCK ANVI
Sbjct: 1056 LTRQPVADKKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVI 1115
Query: 283 QRV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
+R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1116 ERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1168
>gi|75311613|sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2b;
Short=AtNRPD2b; Short=Nuclear RNA polymerase D 2b;
AltName: Full=RNA polymerase IV subunit 2b; Short=POL IV
2b
gi|9294064|dbj|BAB02021.1| DNA-dependent RNA polymerase II [Arabidopsis thaliana]
Length = 1119
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 206/414 (49%), Positives = 241/414 (58%), Gaps = 115/414 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVD KD + K + D+++ FGK SK
Sbjct: 736 MNKASLERGMFRSEQIRSYKAEVDTKDSE-KRKKMDELVQFGKTYSKIGKVDSLEDDGFP 794
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ
Sbjct: 795 FIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ---- 850
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTP QLLEAA
Sbjct: 851 VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 910
Query: 132 LGKG-ACD------------GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNS 175
L KG AC L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 911 LSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSG 970
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
++RSLIF TFYQ+ +HMSE+KVKFRNTG P
Sbjct: 971 E-------------------------MMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHP 1005
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +PVADRKRFGGI FGEM+ DCLIAHGAS NLHERL KCK ANVI
Sbjct: 1006 LTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVI 1065
Query: 283 QRV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
+R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1066 ERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1118
>gi|242074526|ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
gi|241938382|gb|EES11527.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
Length = 1239
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 197/402 (49%), Positives = 241/402 (59%), Gaps = 103/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
MN+ASLE G+FR+E SYK +V+NKD K + ++FGK +SK G
Sbjct: 868 MNRASLERGMFRTEHLRSYKTDVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLP 926
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ
Sbjct: 927 YIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ---- 982
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 983 VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 1042
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLF 187
LGKG AC G M YATPF T++ VI EQ H++ S+ N + R
Sbjct: 1043 LGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGE----------- 1091
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
++SL+F TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRF
Sbjct: 1092 --------------RMQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1137
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GG++FGEM+ DCL+AHG++ NLHERL C+ VANV+ R V G
Sbjct: 1138 GGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRG 1197
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYC C S+++I++ NVPYGAKLL QEL FSMGI LKFDT++
Sbjct: 1198 PYCGFCKSSENIVRINVPYGAKLLYQEL-FSMGICLKFDTEV 1238
>gi|413919691|gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 2163
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 199/402 (49%), Positives = 245/402 (60%), Gaps = 103/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
MN+ASLE G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 1792 MNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLP 1850
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ
Sbjct: 1851 YIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ---- 1906
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 1907 VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQLLEAA 1966
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFKHYFLF 187
LGKG AC G M YATPF T++ VI EQ H++ S+ GA N +G T
Sbjct: 1967 LGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRW----GAENVLNGRTGE------- 2015
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
++SL+F TFYQ+ IHMSEDKVK+RNTG PLT +PVADRKRF
Sbjct: 2016 --------------RMKSLVFMGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRF 2061
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GG++FGEM+ DCL+AHG++ NLHERL C+ VANV+ R V G
Sbjct: 2062 GGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRG 2121
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYC C S+++I++ NVPYGAKLL QEL FSMGI LKF+T++
Sbjct: 2122 PYCGFCKSSENIVRINVPYGAKLLYQEL-FSMGICLKFETEV 2162
>gi|218195684|gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indica Group]
Length = 1177
Score = 323 bits (827), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 249/407 (61%), Gaps = 110/407 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK-------- 44
MN+ASLE G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 803 MNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLD 859
Query: 45 ------------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++R
Sbjct: 860 DDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLR 919
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 126
Q V S CLGDKFSSMHGQKGV+GFLE QTP Q
Sbjct: 920 Q----VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 975
Query: 127 LLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFK 182
LLEAALGKG A G M YATPF T++ VIT+Q H++ S+ GA + +G T
Sbjct: 976 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERM 1031
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
H SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVA
Sbjct: 1032 H---------------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1070
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG-- 287
DRKRFGG++FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V
Sbjct: 1071 DRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGG 1130
Query: 288 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
GPYC C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1131 KKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1176
>gi|222629653|gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group]
Length = 1185
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 249/407 (61%), Gaps = 110/407 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK-------- 44
MN+ASLE G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 811 MNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLD 867
Query: 45 ------------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++R
Sbjct: 868 DDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLR 927
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 126
Q V S CLGDKFSSMHGQKGV+GFLE QTP Q
Sbjct: 928 Q----VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 983
Query: 127 LLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFK 182
LLEAALGKG A G M YATPF T++ VIT+Q H++ S+ GA + +G T
Sbjct: 984 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERM 1039
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
H SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVA
Sbjct: 1040 H---------------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1078
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG-- 287
DRKRFGG++FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V
Sbjct: 1079 DRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGG 1138
Query: 288 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
GPYC C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1139 KKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1184
>gi|115460882|ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza sativa Japonica Group]
Length = 1270
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 249/407 (61%), Gaps = 110/407 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK-------- 44
MN+ASLE G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 896 MNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLD 952
Query: 45 ------------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++R
Sbjct: 953 DDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLR 1012
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 126
Q V S CLGDKFSSMHGQKGV+GFLE QTP Q
Sbjct: 1013 Q----VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1068
Query: 127 LLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFK 182
LLEAALGKG A G M YATPF T++ VIT+Q H++ S+ GA + +G T
Sbjct: 1069 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERM 1124
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
H SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVA
Sbjct: 1125 H---------------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1163
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG-- 287
DRKRFGG++FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V
Sbjct: 1164 DRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGG 1223
Query: 288 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
GPYC C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1224 KKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1269
>gi|38347314|emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
Length = 1316
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 249/407 (61%), Gaps = 110/407 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK-------- 44
MN+ASLE G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 942 MNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLD 998
Query: 45 ------------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++R
Sbjct: 999 DDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLR 1058
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 126
Q V S CLGDKFSSMHGQKGV+GFLE QTP Q
Sbjct: 1059 Q----VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1114
Query: 127 LLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFK 182
LLEAALGKG A G M YATPF T++ VIT+Q H++ S+ GA + +G T
Sbjct: 1115 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERM 1170
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
H SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVA
Sbjct: 1171 H---------------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1209
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG-- 287
DRKRFGG++FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V
Sbjct: 1210 DRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGG 1269
Query: 288 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
GPYC C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1270 KKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1315
>gi|90399221|emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
Length = 1343
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 249/407 (61%), Gaps = 110/407 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK-------- 44
MN+ASLE G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 969 MNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLD 1025
Query: 45 ------------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++R
Sbjct: 1026 DDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLR 1085
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 126
Q V S CLGDKFSSMHGQKGV+GFLE QTP Q
Sbjct: 1086 Q----VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1141
Query: 127 LLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFK 182
LLEAALGKG A G M YATPF T++ VIT+Q H++ S+ GA + +G T
Sbjct: 1142 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERM 1197
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
H SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVA
Sbjct: 1198 H---------------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1236
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG-- 287
DRKRFGG++FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V
Sbjct: 1237 DRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGG 1296
Query: 288 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
GPYC C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1297 KKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1342
>gi|38344903|emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
Length = 1343
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 249/407 (61%), Gaps = 110/407 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNK-----DIQVKSRPSDDMLNFGKIQSK-------- 44
MN+ASLE G+FR+E +YKAEV+NK + ++K + D ++FGK+QSK
Sbjct: 969 MNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMK---DKIDFGKMQSKRGRVDNLD 1025
Query: 45 ------------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+GKNFAVV++R
Sbjct: 1026 DDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLR 1085
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 126
Q V S CLGDKFSSMHGQKGV+GFLE QTP Q
Sbjct: 1086 Q----VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1141
Query: 127 LLEAALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQLLNCIGARN--SGITFIFK 182
LLEAALGKG A G M YATPF T++ VIT+Q H++ S+ GA + +G T
Sbjct: 1142 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRW----GAESVLNGRTGERM 1197
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
H SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVA
Sbjct: 1198 H---------------------SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1236
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG-- 287
DRKRFGG++FGEM+ DCL+AHGA+ NLHERL C+ VANVI R V
Sbjct: 1237 DRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGG 1296
Query: 288 ----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
GPYC C S+++I++ NVPYGAKLL QEL FSMGI L+F+T++
Sbjct: 1297 KKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL-FSMGICLRFETEV 1342
>gi|357126199|ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 190/402 (47%), Positives = 236/402 (58%), Gaps = 103/402 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEV+ K+ +K + ++FGK+QSK
Sbjct: 842 MNRASLERGMFRTEHIRSYKAEVETKE-PIKRLKLKEKVDFGKMQSKRGRVDNLDDDGLP 900
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDIVIGK +E G DHSIK+KHTE+G+V +VLLS+ND+GKNFAVV++RQ
Sbjct: 901 YVGASLQSGDIVIGKVSESGEDHSIKMKHTEKGMVQRVLLSANDEGKNFAVVTLRQ---- 956
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S C+GDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 957 VRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAA 1016
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQ--LLNCIGARNSGITFIFKHYFLF 187
LGKG A G M YATPF ++ VI+EQ H++ S+ + I R
Sbjct: 1017 LGKGIALGGAMRYATPFTPASLEVISEQLHKAGFSRGGAESVINGRTGE----------- 1065
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+ SLIF FYQ+ HM+EDKVKFRNTG PLT +PVADRKRF
Sbjct: 1066 --------------RMHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRF 1111
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------G 288
GG++FGEM+ DCL+AHGA+ NLHERL C+ VANV+ R V G
Sbjct: 1112 GGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICRTCERVANVVMRGVPGGKRIRG 1171
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYC C S+++ ++ VPYGAKLL QEL F MGI LKF T++
Sbjct: 1172 PYCGFCRSSENTVRIAVPYGAKLLYQEL-FCMGICLKFQTEI 1212
>gi|357156376|ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 189/399 (47%), Positives = 232/399 (58%), Gaps = 97/399 (24%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEV+ K+ K + ++FGK+QSK
Sbjct: 842 MNRASLERGMFRTEHIRSYKAEVETKE-PTKRLKLKEKVDFGKMQSKRGRVDNLDDDGLP 900
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDIVIGK +E G DHSIK+KHTE+G+ +VLLS+ND+GKNFAVV++RQ
Sbjct: 901 YVGASLQSGDIVIGKVSESGEDHSIKMKHTEKGMAQRVLLSANDEGKNFAVVTLRQ---- 956
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S C+GDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 957 VRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAA 1016
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 190
LGKG A G M YATPF ++ VI+EQ L+ G SG + +
Sbjct: 1017 LGKGIALGGAMRYATPFTPASLEVISEQ--------LHKAGFSRSGAESVINGRTGERM- 1067
Query: 191 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 250
SLIF FYQ+ HM+EDKVKFRNTG PLT +PVADRKRFGG+
Sbjct: 1068 -------------HSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGV 1114
Query: 251 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYC 291
+FGEM+ DCL+AHGA+ NLHERL C+ VANV+ R V GPYC
Sbjct: 1115 KFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICRTCERVANVVMRSVPGGKRIRGPYC 1174
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
C S+++ ++ VPYGAKLL QEL F MGI LKF T++
Sbjct: 1175 GFCRSSENTVRIAVPYGAKLLYQEL-FCMGICLKFQTEI 1212
>gi|242080725|ref|XP_002445131.1| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor]
gi|241941481|gb|EES14626.1| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor]
Length = 1251
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 191/409 (46%), Positives = 241/409 (58%), Gaps = 116/409 (28%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI--QVKSRPSDDMLNFGKIQSK----------- 44
+N+ASLE G+FR+ +SYKA+V+NK+I ++K R S +NFGK+QSK
Sbjct: 879 LNRASLERGMFRTLHLKSYKAQVENKEITRRLKHRES---INFGKVQSKRGKVDSLDSEG 935
Query: 45 ---------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
SGDIVIGK +E G DHS KL HTE+G+V KV+LS+NDDG NFA V++RQS
Sbjct: 936 LPYVGASLQSGDIVIGKVSESGEDHSAKLMHTEKGMVDKVVLSANDDGVNFATVTLRQS- 994
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLE 129
S C+GDKF+SMHGQKGV+G L+ QTP QLLE
Sbjct: 995 ---RSPCVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTPGQLLE 1051
Query: 130 AALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQ-----LLNC-IGARNSGITFIF 181
AALGKG A G + YATPF T T VITEQ H++ S+ +LN G R
Sbjct: 1052 AALGKGIAMGGKVRYATPFTTPTVDVITEQLHKAGFSRWGEESVLNGQTGER-------- 1103
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
++SL+F TFYQ+ +HM+EDKVKFRNTG P+T +PV
Sbjct: 1104 ---------------------MKSLVFMGPTFYQRLVHMAEDKVKFRNTGPVHPVTRQPV 1142
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV--- 285
D+KRFGG++FGEM+ DC++AHGA+ NLHERL C+ VANVI R
Sbjct: 1143 EDKKRFGGVKFGEMERDCMLAHGAAANLHERLFTLSDFSQMHICQACQRVANVIMRPAEG 1202
Query: 286 ----VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
V GPYC C SA+ I++ NVPYG+KLL QEL F MGI LKFDT++
Sbjct: 1203 GSKKVHGPYCMFCRSAERIVRVNVPYGSKLLYQEL-FCMGICLKFDTEI 1250
>gi|357166265|ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1236
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 187/399 (46%), Positives = 231/399 (57%), Gaps = 97/399 (24%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKA+V+ K+ K + ++FGK+QSK
Sbjct: 865 MNRASLERGMFRTELIRSYKADVETKE-PAKRLKLKEKVDFGKMQSKRGRVDSLDDDGLP 923
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDIVIGK +E G DHSIKLKHTE+G+V +VLLS+ND+ KNFAVV++RQ
Sbjct: 924 YVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEEKNFAVVTLRQ---- 979
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S C+GDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 980 VRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAA 1039
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 190
LGKG A M YATPF T++ VI+EQ L+ G G +
Sbjct: 1040 LGKGIALGSAMRYATPFTTASLEVISEQ--------LHKAGFSGGGTESVLNG------- 1084
Query: 191 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 250
+ SLIF FYQ+ HM+EDKVKFRNTG PLT +PVADRKRFGG+
Sbjct: 1085 -------QTGERMHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGV 1137
Query: 251 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG------GPYC 291
+FGEM+ DCL+AHGA+ NLHERL C+ ANV+ R + GPYC
Sbjct: 1138 KFGEMERDCLLAHGAAANLHERLFMLSDFAQMHICQTCQRAANVVMRAIPGGKKIRGPYC 1197
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
C S+++ ++ VPYGAKLL QEL FSMGI LKF T++
Sbjct: 1198 GFCRSSENKVRIAVPYGAKLLYQEL-FSMGICLKFKTEV 1235
>gi|413917248|gb|AFW57180.1| putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1259
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 186/408 (45%), Positives = 234/408 (57%), Gaps = 113/408 (27%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+ +SYKA+V+NK+I + + ++ +NFGK+QSK
Sbjct: 886 MNRASLERGMFRTLHFKSYKAQVENKEITRRLKHREN-INFGKVQSKRGKVDSLDSDGLP 944
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDIVIGK E G DHS KL HTE+G+V KV+LS+NDDG NFA V++RQS
Sbjct: 945 YVGASLQSGDIVIGKVTESGEDHSAKLMHTEKGMVDKVVLSANDDGVNFATVTLRQS--- 1001
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
S C+GDKF+SMHGQKGV+G L+ QTP QLLEAA
Sbjct: 1002 -RSPCVGDKFASMHGQKGVVGLLDSQENFPFTSQGIVPDMVINPHGFPTRQTPGQLLEAA 1060
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 190
LGKG A G + YATPF T T VI EQ H FC
Sbjct: 1061 LGKGIALGGKVRYATPFTTPTVEVIAEQ-----------------------LHKAGFCR- 1096
Query: 191 ECPMDWIAFICL-------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
W L ++SL+F TFYQ+ +HM+EDKVKFRNTG PLT +PV D
Sbjct: 1097 -----WGEESVLNGQTGERMKSLVFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVED 1151
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV----- 285
+KRFGG++FGEM+ DC++AHGA+ NLHERL C+ VANVI R
Sbjct: 1152 KKRFGGVKFGEMERDCMLAHGAAANLHERLFTLSDFSRMHICQACERVANVIVRAAEGGG 1211
Query: 286 ---VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
V GPYC C SA+ +++ +VPYG+KLL QEL FSMGI LKF+T++
Sbjct: 1212 GKKVRGPYCLFCRSAERVVRVDVPYGSKLLYQEL-FSMGICLKFETEV 1258
>gi|67810790|gb|AAY82004.1| RNA polymerase IV second largest subunit [Arabidopsis thaliana]
Length = 333
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 182/359 (50%), Positives = 210/359 (58%), Gaps = 91/359 (25%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
DD F +GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+R
Sbjct: 4 DDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLR 63
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 126
Q V S CLGDKFSSMHGQKGVLG+LE QTP Q
Sbjct: 64 Q----VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQ 119
Query: 127 LLEAALGKG-ACD------------GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CI 170
LLEAAL KG AC L +ATPF+T ITEQ H++ S+ N
Sbjct: 120 LLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVY 179
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
R+ ++RSLIF TFYQ+ +HMSE+KVKFRNT
Sbjct: 180 NGRSGE-------------------------MMRSLIFMGPTFYQRLVHMSENKVKFRNT 214
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKN 277
G PLT +PVADRKRFGGI FGEM+ DCLIAHGAS NLHERL KCK
Sbjct: 215 GPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKT 274
Query: 278 VANVIQRV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
ANVI+R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 275 YANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 332
>gi|357139731|ref|XP_003571431.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1242
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 234/402 (58%), Gaps = 106/402 (26%)
Query: 2 NQASLECGVFRSE---SYKAEVDNKDI--QVKSRPSDDMLNFGKIQSK------------ 44
N+ SLE G+FR++ SYK +++NK++ ++K R + ++FGK QSK
Sbjct: 873 NRGSLERGMFRTQHFKSYKTQIENKEVTRRLKYR---EKIDFGKTQSKRGRVDSLDIDGL 929
Query: 45 --------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 96
SGDIVIGK +E G DHS+KL HTE+G+V KV+LS+NDDGKN AVV++RQ
Sbjct: 930 PYIGASLQSGDIVIGKVSESGEDHSMKLMHTEKGMVEKVVLSANDDGKNSAVVTLRQ--- 986
Query: 97 MVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEA 130
V S C+GDKF+SMHGQKGV+G L+ QTP QLLEA
Sbjct: 987 -VRSPCVGDKFASMHGQKGVVGLLDSQENFPFTFQGIVPDIVINPHGFPTRQTPGQLLEA 1045
Query: 131 ALGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFL 186
ALGKG A G+ YATPF T + VITEQ H++ S+ + + +N
Sbjct: 1046 ALGKGIALGGMTRYATPFTTPSVDVITEQLHKAGFSRWGGESVLNGQNGE---------- 1095
Query: 187 FCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 246
++SL+F FYQ+ HM+ DKVK RNTG PLT +PV D+KR
Sbjct: 1096 ---------------RMQSLVFMGPAFYQRLHHMAVDKVKLRNTGPVHPLTRQPVEDKKR 1140
Query: 247 FGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVG-----G 288
FGG++FGEM+ DCL+AHGA+ N+HERL C+ VANVI R G G
Sbjct: 1141 FGGVKFGEMERDCLLAHGATANVHERLFRVSDLSEMHICQACQRVANVILRSEGGKKVHG 1200
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
PYC C SA++I++ NVPYGA LL +EL F MGI LKF+T++
Sbjct: 1201 PYCGFCKSAENILRVNVPYGASLLYKEL-FCMGICLKFETEV 1241
>gi|115475001|ref|NP_001061097.1| Os08g0171600 [Oryza sativa Japonica Group]
gi|113623066|dbj|BAF23011.1| Os08g0171600 [Oryza sativa Japonica Group]
Length = 462
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 231/406 (56%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
+N+ASLE G+FR++ SYKA ++NK+I + + ++ +NFGK SK G
Sbjct: 87 LNRASLERGMFRTQHFKSYKALIENKEITKRLKHKEN-INFGKTPSKKGLVDSLDIDGLP 145
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DI+IGK ++ G DHSIKL HTE+G+V KV+LS+ DDG N A V++RQ+
Sbjct: 146 YIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQT--- 202
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
S +GDKF+SMHGQKGV+GFL+ QTP QLLEAA
Sbjct: 203 -RSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAA 261
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLF 187
LGKG A G YATPF + + VITEQ H++ S+ + I R
Sbjct: 262 LGKGIALGGATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGE----------- 310
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
S +FT TFYQ+ HM+EDKVKFRNTG PLT +PV DR+R+
Sbjct: 311 --------------RAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRY 356
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ----------R 284
GG++FGEM+ DCL+AHGA+ NLHERL +C+ A V+ R
Sbjct: 357 GGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGR 416
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
V GPYCR C SA+++++ +VPYGAK+L QEL FSMGI LKFDT+L
Sbjct: 417 KVRGPYCRFCRSAEEVVRVSVPYGAKILYQEL-FSMGICLKFDTEL 461
>gi|125602346|gb|EAZ41671.1| hypothetical protein OsJ_26208 [Oryza sativa Japonica Group]
Length = 1257
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 231/406 (56%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
+N+ASLE G+FR++ SYKA ++NK+I + + ++ +NFGK SK G
Sbjct: 882 LNRASLERGMFRTQHFKSYKALIENKEITKRLKHKEN-INFGKTPSKKGLVDSLDIDGLP 940
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DI+IGK ++ G DHSIKL HTE+G+V KV+LS+ DDG N A V++RQ+
Sbjct: 941 YIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQT--- 997
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
S +GDKF+SMHGQKGV+GFL+ QTP QLLEAA
Sbjct: 998 -RSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAA 1056
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLF 187
LGKG A G YATPF + + VITEQ H++ S+ + I R
Sbjct: 1057 LGKGIALGGATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGE----------- 1105
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
S +FT TFYQ+ HM+EDKVKFRNTG PLT +PV DR+R+
Sbjct: 1106 --------------RAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRY 1151
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ----------R 284
GG++FGEM+ DCL+AHGA+ NLHERL +C+ A V+ R
Sbjct: 1152 GGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGR 1211
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
V GPYCR C SA+++++ +VPYGAK+L QEL FSMGI LKFDT+L
Sbjct: 1212 KVRGPYCRFCRSAEEVVRVSVPYGAKILYQEL-FSMGICLKFDTEL 1256
>gi|40253865|dbj|BAD05800.1| putative DNA-dependent RNA polymerase II [Oryza sativa Japonica
Group]
Length = 1136
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 231/406 (56%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
+N+ASLE G+FR++ SYKA ++NK+I + + ++ +NFGK SK G
Sbjct: 761 LNRASLERGMFRTQHFKSYKALIENKEITKRLKHKEN-INFGKTPSKKGLVDSLDIDGLP 819
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DI+IGK ++ G DHSIKL HTE+G+V KV+LS+ DDG N A V++RQ+
Sbjct: 820 YIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQT--- 876
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
S +GDKF+SMHGQKGV+GFL+ QTP QLLEAA
Sbjct: 877 -RSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAA 935
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSFVSQL--LNCIGARNSGITFIFKHYFLF 187
LGKG A G YATPF + + VITEQ H++ S+ + I R
Sbjct: 936 LGKGIALGGATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGE----------- 984
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
S +FT TFYQ+ HM+EDKVKFRNTG PLT +PV DR+R+
Sbjct: 985 --------------RAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRY 1030
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ----------R 284
GG++FGEM+ DCL+AHGA+ NLHERL +C+ A V+ R
Sbjct: 1031 GGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGR 1090
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
V GPYCR C SA+++++ +VPYGAK+L QEL FSMGI LKFDT+L
Sbjct: 1091 KVRGPYCRFCRSAEEVVRVSVPYGAKILYQEL-FSMGICLKFDTEL 1135
>gi|67515354|gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
Length = 1123
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 183/310 (59%), Gaps = 76/310 (24%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVDNK+ K +D +NFGK QSK
Sbjct: 840 MNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFP 899
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IGK++E GADHS+KLKHTERG+V KVLLS+ND+GKNFAVVS+RQ
Sbjct: 900 FIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQ---- 955
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 956 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1015
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 190
LGKG A G YATPF+T + I EQ L G G ++
Sbjct: 1016 LGKGIALGGGQKYATPFSTLSVDAIMEQ--------LQGRGFTRWGNERVYNG------- 1060
Query: 191 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 250
+V SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVADRKRFGGI
Sbjct: 1061 -------RTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1113
Query: 251 EFGEMKCDCL 260
+FGEM+ DCL
Sbjct: 1114 KFGEMERDCL 1123
>gi|67626014|gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo biloba]
Length = 651
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 211/395 (53%), Gaps = 93/395 (23%)
Query: 2 NQASLECGVFRS---ESYKAEVDNKDIQVKSRPSDDMLNFGKIQSK-------------- 44
N AS++ G+FRS ++ +E D+ D K ++FGK Q+
Sbjct: 283 NHASIDRGLFRSMHFHTFISETDHHDNDSKKSSFRVEVDFGKPQTGNLKVDKLDDDGLPF 342
Query: 45 ------SGDIVIGKYAEIGAD--HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 96
SGDI+IGK +D S+KLKHTE+G V +V++S+NDD K FA V +R+
Sbjct: 343 IGASLVSGDILIGKVGPQPSDVNFSLKLKHTEKGRVDQVVMSANDDDKKFARVCLRE--- 399
Query: 97 MVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEA 130
V S LGDKFSSMHGQKGV+GF+E QTP QL E
Sbjct: 400 -VRSPSLGDKFSSMHGQKGVVGFIEEQENMPFTQEGIVPDLIINPHAFPSRQTPGQLFEC 458
Query: 131 ALGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCL 189
A GK A G++ ATP+ T ITEQ L+ G + G ++
Sbjct: 459 AFGKAIASSGVVGDATPYGPVTLQYITEQ--------LHRCGYQQWGKEQMYNG------ 504
Query: 190 FECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 249
C ++S IF T+YQ+ IHM+EDK+K+RN G PLT +PVADRKR GG
Sbjct: 505 --------RTGCKLQSKIFIGPTYYQRLIHMAEDKMKYRNHGPVHPLTRQPVADRKRHGG 556
Query: 250 IEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV-VGGPYCRICN 295
++FGEM+ DC++AHGA+ NL ERL +C+N+A VI R V GPYC C
Sbjct: 557 VKFGEMERDCMLAHGATANLLERLFFLSDFSTMHVCRECRNMATVILRDGVRGPYCPFCK 616
Query: 296 SADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
+A I+K NVPY K+L QEL FS+G+ L+F T+L
Sbjct: 617 TAKHIVKVNVPYACKMLYQEL-FSIGMCLRFQTEL 650
>gi|109289916|gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Solanum bulbocastanum]
Length = 304
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/286 (49%), Positives = 166/286 (58%), Gaps = 76/286 (26%)
Query: 95 VNMVH--SACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQ 126
VN+ H S CLGDKFSSMHGQKGVLG+LE QTP Q
Sbjct: 44 VNLEHVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQ 103
Query: 127 LLEAALGKG-ACDGLMSYATPFAT-STGGVITEQHQSFVSQLLN--CIGARNSGITFIFK 182
LLEA+LGKG A G YATPF+T S ++ + H S+ N R
Sbjct: 104 LLEASLGKGIALGGGEKYATPFSTLSVDAILKQLHGRGFSRWGNERVYNGRTGE------ 157
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
+V SLIF TFYQ+ IHM+EDKVKFRNTG PLT +PVA
Sbjct: 158 -------------------MVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 198
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV---- 285
DRKRFGGI+FGEM+ DCLIAHGA+ NLHERL KCKN+ANVIQR
Sbjct: 199 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICGKCKNMANVIQRSAPGG 258
Query: 286 -VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
+ GP+CR C S +DI+K +VPYGAKLL QEL FSMGI+LKFDT++
Sbjct: 259 KIRGPFCRFCESVEDIVKVDVPYGAKLLCQEL-FSMGISLKFDTEI 303
>gi|227826389|gb|ACP41919.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 376
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 133/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 170 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 229
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 230 HIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ---- 285
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTPAQLLEAA
Sbjct: 286 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 345
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 346 LGKGIACGGTLRYATPFSTPSVESITEQ 373
>gi|227826381|gb|ACP41915.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 475
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 133/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 269 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 328
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 329 HIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ---- 384
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTPAQLLEAA
Sbjct: 385 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 444
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 445 LGKGIACGGTLRYATPFSTPSVESITEQ 472
>gi|227826391|gb|ACP41920.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 380
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 133/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 174 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 233
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 234 HIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ---- 289
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTPAQLLEAA
Sbjct: 290 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 349
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 350 LGKGIACGGXLRYATPFSTPSVESITEQ 377
>gi|227826395|gb|ACP41922.1| RNA polymerase IV, partial [Heliosperma tommasinii]
Length = 380
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 133/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 174 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 233
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 234 HIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ---- 289
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTPAQLLEAA
Sbjct: 290 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 349
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 350 LGKGIACGGTLRYATPFSTPSVESITEQ 377
>gi|227826379|gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum]
Length = 475
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 133/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 269 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 328
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 329 HIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ---- 384
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTPAQLLEAA
Sbjct: 385 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 444
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 445 LGKGIACGGTLRYATPFSTPSVESITEQ 472
>gi|227826383|gb|ACP41916.1| RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
Length = 475
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 133/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 269 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 328
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 329 HIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ---- 384
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTPAQLLEAA
Sbjct: 385 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 444
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 445 LGKGIACGGTLRYATPFSTPSVESITEQ 472
>gi|449485305|ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1031
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 132/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVDNK+ K R SDD +NFGK QSK
Sbjct: 825 MNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFP 884
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDIVIG+ AE GADHSIKLKHTE+G+V KV+LSSNDDGKN+AVVS+RQ
Sbjct: 885 YIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQ---- 940
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTP QLLEAA
Sbjct: 941 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1000
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG A G + YATPF+T + IT+Q
Sbjct: 1001 LGKGIAAGGSLKYATPFSTPSVDAITDQ 1028
>gi|227826393|gb|ACP41921.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 380
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/208 (56%), Positives = 132/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 174 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 233
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 234 HIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQ---- 289
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLGFLE QTPAQLLEAA
Sbjct: 290 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 349
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + I EQ
Sbjct: 350 LGKGIACGGTLRYATPFSTPSVESIIEQ 377
>gi|237512136|gb|ACQ99759.1| RNA polymerase IV, partial [Heliosperma macranthum]
Length = 479
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/208 (55%), Positives = 133/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 269 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 328
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ
Sbjct: 329 HIGANLQSGDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ---- 384
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTPAQLLEAA
Sbjct: 385 VRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 444
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 445 LGKGIACGGTLRYATPFSTPSVESITEQ 472
>gi|237512138|gb|ACQ99760.1| RNA polymerase IV, partial [Heliosperma macranthum]
Length = 479
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/208 (55%), Positives = 133/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD K R DD ++FGKIQSK
Sbjct: 269 MNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFP 328
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ
Sbjct: 329 HIGANLQSGDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ---- 384
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTPAQLLEAA
Sbjct: 385 VRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 444
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 445 LGKGIACGGTLRYATPFSTPSVESITEQ 472
>gi|237512140|gb|ACQ99761.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 443
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 132/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVD+KD R DD ++FGKIQSK
Sbjct: 237 MNRASLERGMFRTEHIRSYKAEVDDKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFP 296
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ
Sbjct: 297 HIGANLQSGDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ---- 352
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTPAQLLEAA
Sbjct: 353 VRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 412
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 413 LGKGIACGGTLRYATPFSTPSVESITEQ 440
>gi|237512129|gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae]
Length = 363
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 131/208 (62%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD R DD ++FGKIQSK
Sbjct: 157 MNRASLERGMFRTEHIRSYKAEVDNKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFP 216
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ
Sbjct: 217 HIGANLQSGDIIIGRCSESGXDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ---- 272
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTPAQLLEAA
Sbjct: 273 VRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 332
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + Y TPF+T + ITEQ
Sbjct: 333 LGKGIACGGTLRYTTPFSTPSVESITEQ 360
>gi|237512131|gb|ACQ99757.1| RNA polymerase IV, partial [Heliosperma tommasinii]
Length = 362
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 131/208 (62%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVDNKD R DD ++FGKIQSK
Sbjct: 157 MNRASLERGMFRTEHIRSYKAEVDNKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFP 216
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ
Sbjct: 217 HIGANLQSGDIIIGRCSESGXDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ---- 272
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTPAQLLEAA
Sbjct: 273 VRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 332
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + Y TPF+T + ITEQ
Sbjct: 333 LGKGIACGGTLRYTTPFSTPSVESITEQ 360
>gi|237512142|gb|ACQ99762.1| RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
Length = 474
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 132/208 (63%), Gaps = 54/208 (25%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FR+E SYKAEVD+KD R DD ++FGKIQSK
Sbjct: 269 MNRASLERGMFRTEHIRSYKAEVDDKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFP 328
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
SGDI+IG+ +E G DHSIKLKHTE+G+V KV+LS+NDDGKNFAVVS+RQ
Sbjct: 329 HIGANLQSGDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQ---- 384
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTPAQLLEAA
Sbjct: 385 VRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAA 444
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G + YATPF+T + ITEQ
Sbjct: 445 LGKGIACGGTLRYATPFSTPSVESITEQ 472
>gi|297835422|ref|XP_002885593.1| hypothetical protein ARALYDRAFT_898915 [Arabidopsis lyrata subsp.
lyrata]
gi|297331433|gb|EFH61852.1| hypothetical protein ARALYDRAFT_898915 [Arabidopsis lyrata subsp.
lyrata]
Length = 505
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 106/148 (71%), Gaps = 20/148 (13%)
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
++RSLIF TFYQ+ +HMSEDKVKFRNTG PLT + VADRKRFGGI FGEM+ DCLI
Sbjct: 358 MMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQQVADRKRFGGIRFGEMERDCLI 417
Query: 262 AHGASGNLHERL-------------KCKNVANVIQRV------VGGPYCRICNSADDIIK 302
AHGAS NLHERL KCK ANVI+R + GPYCR+C S+D +++
Sbjct: 418 AHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVR 477
Query: 303 ANVPYGAKLLSQELSFSMGITLKFDTQL 330
VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 478 VYVPYGAKLLCQEL-FSMGITLNFDTKL 504
>gi|283443702|gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
largest subunit 2-3 [Zea mays]
Length = 1094
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 128/208 (61%), Gaps = 55/208 (26%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
MN+ASLE G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 858 MNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLP 916
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ
Sbjct: 917 YVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ---- 972
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 973 VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 1032
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G M YATPF T++ VI EQ
Sbjct: 1033 LGKGIACKGTMRYATPFTTASVDVIAEQ 1060
>gi|414585187|tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1063
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 128/208 (61%), Gaps = 55/208 (26%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
MN+ASLE G+FR+E SYKA+V+NKD K + ++FGK +SK G
Sbjct: 858 MNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDDGLP 916
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DIVIGK +E G DHSIKLKHTE+G+V KVLLS+ND+GKNFAVV++RQ
Sbjct: 917 YVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ---- 972
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V + CLGDKFSSMHGQKGV+GFLE QTP QLLEAA
Sbjct: 973 VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 1032
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ 158
LGKG AC G M YATPF T++ VI EQ
Sbjct: 1033 LGKGIACKGTMRYATPFTTASVDVIAEQ 1060
>gi|67515340|gb|AAY68199.1| RNA polymerase IV second largest subunit [Isoetes sp. JL-2005]
Length = 623
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 174/373 (46%), Gaps = 93/373 (24%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSR---PSDDMLNFGKIQS-------------- 43
+NQ+SL+ G+FRS + D + R PS+ + K QS
Sbjct: 276 LNQSSLDRGMFRSMHFHTHKDALKPTLDQRFGEPSESDVGGYKKQSHYEKLDSDGLPHVG 335
Query: 44 ---KSGDIVIGKYAEIGAD-----HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
S D++IGK GAD S KLKHTERG V +V++++ +D + V +R+
Sbjct: 336 AALSSSDVIIGKLFTAGADVREVDASQKLKHTERGRVDQVVIAAKNDAETDVKVRLRE-- 393
Query: 96 NMVHSACLGDKFSSMHGQKGVLGF--------------------------LEQTPAQLLE 129
+ +GDKFSSMHGQKGV+G QT QL+E
Sbjct: 394 --CRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPDLIINPHAFPTRQTLGQLME 451
Query: 130 AALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 188
GK A ATPF E+ S+ L+ G + +G+ C
Sbjct: 452 CLAGKAAAVSAREQDATPF--------VERSLPRFSEELHKAGFQRTGME---------C 494
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
++ + VR + +TFYQ+ HM+EDK+K+R TGS PLT +P+ DRKR G
Sbjct: 495 MYS---GRVGTRMKVR--VNIGVTFYQRLTHMAEDKMKYRRTGSVHPLTRQPIVDRKRHG 549
Query: 249 GIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICN 295
GI FGEM+ DC+IAHGAS L ERL KC+ A+V Q V P CR C
Sbjct: 550 GIRFGEMERDCMIAHGASATLQERLFLLSDPYVMYICTKCRRTASVEQNKV--PRCRFCK 607
Query: 296 SADDIIKANVPYG 308
+I++ NVPY
Sbjct: 608 CGSNIVRVNVPYA 620
>gi|223942873|gb|ACN25520.1| unknown [Zea mays]
Length = 141
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/138 (60%), Positives = 100/138 (72%), Gaps = 20/138 (14%)
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
TFYQ+ IHMSEDKVKFRNTG PLT +PVADRKRFGG++FGEM+ DCL+AHG++ NLHE
Sbjct: 4 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHE 63
Query: 272 RL-------------KCKNVANVIQRVVG------GPYCRICNSADDIIKANVPYGAKLL 312
RL C+ VANV+ R V GPYC C S+++I++ NVPYGAKLL
Sbjct: 64 RLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLL 123
Query: 313 SQELSFSMGITLKFDTQL 330
QEL FSMGI LKF+TQ+
Sbjct: 124 YQEL-FSMGICLKFETQV 140
>gi|67515344|gb|AAY68201.1| RNA polymerase IV second largest subunit [Lunularia cruciata]
Length = 789
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 191/422 (45%), Gaps = 123/422 (29%)
Query: 1 MNQASLECGVFRSESYKA--EVDNKDIQVKSRPS------------------DDMLNFGK 40
M+Q++L+ G+FR++ Y+ + D + +PS DD L +
Sbjct: 398 MDQSALDRGMFRTQHYRTFKSEERSDHETFGKPSAADDSGGPRAMRSDQILEDDGLPYIG 457
Query: 41 IQSKSGDIVIGKYAEIG------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
D+++GK D S +LK E+G V +V+L +++GK A
Sbjct: 458 CNLGMNDVIVGKIVTHSQKNTQSADSARLVDTSTRLKAHEKGRVEQVILVQDEEGKKIAK 517
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQ 122
V +R++ +GDKFS MHGQKG++G + Q
Sbjct: 518 VKLRET----RIPQVGDKFSRMHGQKGIVGMVFTQEDLPFTNEGIVPDIIINPHAFPSRQ 573
Query: 123 TPAQLLEAALGKG-ACDGLMSYATPF-ATSTGGVITEQ-HQSFVSQLLNCIGARNSGITF 179
T Q+ E+ALGK A G +ATPF ST ITE H+S G G+
Sbjct: 574 TLGQMCESALGKAIAKRGEQLFATPFNPASTVESITEALHES---------GYNGWGMET 624
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
++ Y + + IF TFYQ+ HM EDK+K+R+ G PLT +
Sbjct: 625 MYNGYTGKAMV--------------AKIFIGSTFYQRLTHMVEDKIKYRSRGHVHPLTRQ 670
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANV-IQRV 285
PV+DRKR GG++FGEM+ DCLIAHGA+ L ER CK +A++ I R+
Sbjct: 671 PVSDRKRHGGVKFGEMERDCLIAHGAAATLQERTFHLSDYHEIHICRSCKQMAHMGIDRI 730
Query: 286 VGGPYCRIC-----------------NSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
P CR C ++I+K +PY KLL QEL SMGI++ DT
Sbjct: 731 ---PTCRFCKEKNKKVVKGKKTDKTETKVEEIVKVEIPYACKLLIQELQ-SMGISVGLDT 786
Query: 329 QL 330
++
Sbjct: 787 EV 788
>gi|168003281|ref|XP_001754341.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694443|gb|EDQ80791.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 906
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 185/395 (46%), Gaps = 95/395 (24%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVK-SRPSDDML------NFGKIQSK------ 44
MNQAS++ G+FRS ++YK E + K+IQ + S+PS + + K++
Sbjct: 539 MNQASVDRGLFRSAHYKTYKGE-EKKNIQEQFSKPSTSDVKGWYNKSLDKVEGDGFPCLG 597
Query: 45 ----SGDIVIGK-----YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
GDIVIGK + D S LK ++G V +V+LSS +DG A V +R
Sbjct: 598 EKLVKGDIVIGKVTSEVHNPRQVDSSTHLKVHQKGHVDQVMLSSEEDGHRIAKVRLR--- 654
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLE 129
+ + GDKFSSMHGQKGV+G L QT Q+LE
Sbjct: 655 -VTRAPQAGDKFSSMHGQKGVIGALFPQEDLPFTQQGIVPDIIMNPHALPSRQTVGQILE 713
Query: 130 AALGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 188
LGK A G YA PF+ G+ + ++Q L+ G F
Sbjct: 714 CLLGKAIAASGKRRYAIPFS----GI---DNAEAINQYLHEAKLARGGCEF--------- 757
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR-NTGSFQPLTGRPVADRKRF 247
M ++ L+ TFYQ+ HM+EDK+K+R NTG LT +PV DR
Sbjct: 758 -----MSNGTTGQRLKVLVTIGPTFYQRLEHMAEDKIKYRGNTGPVNLLTRQPVKDRNSL 812
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRIC 294
GG++FGEM+ DC++ HGAS L ER C+ A + + P C+ C
Sbjct: 813 GGLKFGEMERDCMLGHGASATLRERYFLLSDPYKMYICQSCRRPATMDSSRI--PKCQFC 870
Query: 295 NSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ I++ +PY KLL QEL SMGI + DT+
Sbjct: 871 KNGKRIVQVQIPYACKLLWQEL-LSMGICVYMDTK 904
>gi|67515348|gb|AAY68203.1| RNA polymerase IV second largest subunit [Psilotum nudum]
Length = 364
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 178/382 (46%), Gaps = 97/382 (25%)
Query: 1 MNQASLECGVFRSESY---KAEVDNKDIQVKSRPSDDMLN-------FGKIQSK------ 44
MNQ+S++ G+F S Y + E+D +D + +PS +N + K+ S
Sbjct: 10 MNQSSIDRGLFNSMHYYGFRVELDGEDESLM-KPSVSDINSAXQSSQYSKLDSDGLPYIG 68
Query: 45 ----SGDIVIGKYA-----EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
S DI+IGK + + D S+KLK TE+G V +V L+ NDD K V +R+
Sbjct: 69 ANLFSYDIIIGKESLEPVNNVFKDTSVKLKSTEKGRVDQVXLTVNDDEKKIVKVRLRER- 127
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLE 129
+GDKFSS+HGQKGV+G QT AQLLE
Sbjct: 128 ---RLPVVGDKFSSLHGQKGVIGGTFSQEELPFTKNGIVPDIIINPHAFPSRQTVAQLLE 184
Query: 130 AALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK----HY 184
L K + G ATPF+ I E+ L+ +G N G + H
Sbjct: 185 IGLAKVTSVAGKKCDATPFSNVKVDKIVEE--------LHRLGYGNWGSEVMVNGQTGHQ 236
Query: 185 FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 244
F ++IF +YQ+ ++M+ED++K+R+ G LT +PV+DR
Sbjct: 237 F------------------EAVIFIGPAYYQRLVYMAEDRIKYRSLGPTHILTHQPVSDR 278
Query: 245 KRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPYCRIC 294
KR GG++ GEM+ DCL+AHGA N+ ERL C V + G +CR C
Sbjct: 279 KRHGGVKIGEMERDCLLAHGACANVQERLFLLSDPYIMYICSKCHMVAAKDTKGYHCRFC 338
Query: 295 NSADDIIKANVPYGAKLLSQEL 316
S I++ ++PY KLL QEL
Sbjct: 339 RSNYHIVQVHMPYACKLLYQEL 360
>gi|168053094|ref|XP_001778973.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669645|gb|EDQ56228.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1238
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 135/398 (33%), Positives = 187/398 (46%), Gaps = 96/398 (24%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKSRPS-----------------DDMLNFGK 40
MN+AS++ G+FRS ++Y+ E + I+ ++PS D + G
Sbjct: 870 MNRASIDRGLFRSMHFKTYRGEERHNVIEHFAKPSISIAKRSRNASLNKIDEDGFPHLGD 929
Query: 41 IQSKSGDIVIGKY-AEIG----ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
K GDI+IGK AE+G AD S +L+ E G V +VLLSS +DG A V +R S
Sbjct: 930 YLEK-GDIIIGKLTAEMGNPKLADSSQRLRAHENGRVDQVLLSSEEDGHRIAKVRLRCS- 987
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLE 129
GDKFSSMHGQKGV+G + QT QLLE
Sbjct: 988 ---RRPQAGDKFSSMHGQKGVIGAVLNQEDLPFTRQGVVPDIIINPHALPNRQTVGQLLE 1044
Query: 130 AALGK-GACDGLMSYATPFA--TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFL 186
+ LGK A G PF ++T + + HQS + + +G T +
Sbjct: 1045 SLLGKLMAVRGTQQSVAPFQKQSATRKFMDQLHQSEYQR--GGSESMTNGTTGM------ 1096
Query: 187 FCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG-SFQPLTGRPVADRK 245
+ SLI TFYQ+ HM EDK+K+R +G LT +PV +RK
Sbjct: 1097 ---------------RLNSLISIGATFYQRLDHMVEDKIKYRGSGGPVDALTRQPVKNRK 1141
Query: 246 RFGGIEFGEMKCDCLIAHGASGNLHER--LKCKNVANVIQRVVGGP----------YCRI 293
GG++FGEM+ DC+I HGAS L ER L A ++ P +C+
Sbjct: 1142 NMGGVKFGEMERDCMIGHGASVTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRFCKF 1201
Query: 294 CNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
C + +++ +PY KLL QEL SMGITL +T+LS
Sbjct: 1202 CCTGKHVVQIQIPYSCKLLWQEL-LSMGITLFLETKLS 1238
>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1238
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 185/414 (44%), Gaps = 104/414 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +PS DD L
Sbjct: 852 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 911
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 912 PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 971
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 972 AKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSEGVVPDLIINPHA 1027
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A GL A+PF T VS+LL G ++ G
Sbjct: 1028 IPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEA--------VSKLLREHGYQSRG 1079
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1080 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1125
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1126 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIAN 1185
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSMAA 337
+ + CR C + +I + ++PY AKLL QEL +M IT + T+ SGVS+ A
Sbjct: 1186 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNITPRLYTESSGVSIRA 1238
>gi|125560304|gb|EAZ05752.1| hypothetical protein OsI_27986 [Oryza sativa Indica Group]
Length = 1347
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 123/213 (57%), Gaps = 56/213 (26%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSG----------- 46
+N+ASLE G+FR++ SYKA ++NK+I + + ++ +NFGK SK G
Sbjct: 945 LNRASLERGMFRTQHFKSYKAPIENKEITKRLKHKEN-INFGKTPSKKGLVDSLDIDGLP 1003
Query: 47 ---------DIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
DI+IGK ++ G DHSIKL HTE+G+V KV+LS+ DDG N A V++RQ+
Sbjct: 1004 YIGASLQSNDIIIGKVSDCGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQT--- 1060
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
S +GDKF+SMHGQKGV+GFL+ QTP QLLEAA
Sbjct: 1061 -RSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAA 1119
Query: 132 LGKG-ACDGLMSYATPFATSTGGVITEQ-HQSF 162
LGKG A G YATPF + + VITEQ H F
Sbjct: 1120 LGKGIALGGATRYATPFTSPSVEVITEQLHNKF 1152
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 80/119 (67%), Gaps = 24/119 (20%)
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANV 281
PLT +PV DR+R+GG++FGEM+ DCL+AHGA+ NLHERL +C+ A V
Sbjct: 1229 PLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVV 1288
Query: 282 IQ----------RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
+ R V GPYCR C SA+++++ +VPYGAK+L QEL FSMGI LKFDT+L
Sbjct: 1289 VSPAVAADGGCGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQEL-FSMGICLKFDTEL 1346
>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus ND90Pr]
Length = 1262
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 181/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDN-KDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF V +Q +SQLL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPFT----DVTVDQ----ISQLLEDAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKL--------------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C ++ + Q
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAQ 1209
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 LKKGLYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
tenuis ATCC 10573]
Length = 1233
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 185/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ RPS DD L
Sbjct: 847 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFERPSRSDTLRLKHGTYEKLDDDGLIT 906
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 907 PGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 966
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 967 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRNEDMPFTSQGIVPDLIINPHA 1022
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 1023 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTA--------EEVSKLLREHGYQSRG 1074
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1075 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1120
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1121 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIAN 1180
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SG+S+
Sbjct: 1181 LKKNQFECRACKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRMYTERSGISV 1231
>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
Length = 1236
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 184/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS ++ +D K ++ +PS DD L
Sbjct: 850 MNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 909
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 910 PGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 969
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 970 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHA 1025
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 1026 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEA--------VSKLLREHGYQSRG 1077
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1078 FEVMYHGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1123
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1124 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIAN 1183
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1184 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGVSV 1234
>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
Length = 1291
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 184/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS ++ +D K ++ +PS DD L
Sbjct: 905 MNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 964
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 965 PGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 1024
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 1025 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHA 1080
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 1081 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEA--------VSKLLREHGYQSRG 1132
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1133 FEVMYHGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1178
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1179 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIAN 1238
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1239 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGVSV 1289
>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1267
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 182/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+A D + ++ +P DD +
Sbjct: 882 MNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYEKLDDDGIVA 941
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE GLV +VLL++N +G
Sbjct: 942 PGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEG 1001
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG--FLEQ------------------- 122
F V +R + +GDKF+S HGQKG +G +++Q
Sbjct: 1002 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHA 1057
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL ATPF TE VS+LL G + G
Sbjct: 1058 IPSRMTIAHLIECQLSKVSSLRGLEGDATPF--------TEVTVDSVSKLLRAHGYHSRG 1109
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1110 FEIMYHGHTGRKMM--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1155
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+I+HGAS L ERL C + + +
Sbjct: 1156 TRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHICDICGLMTPIAK 1215
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + I + ++PY AKLL QEL+ +M I + T+ SG+++
Sbjct: 1216 INTGSFECRPCKNKTKISQIHIPYAAKLLFQELA-AMNIATRMFTKRSGITV 1266
>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
Length = 1228
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 182/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +PS DD L
Sbjct: 842 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 901
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 902 PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 961
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 962 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHA 1017
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + GL A+PF T I S+LL G ++ G
Sbjct: 1018 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAI--------SKLLREHGYQSRG 1069
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1070 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1115
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A VI
Sbjct: 1116 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIAN 1175
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M IT + T+ SG S+
Sbjct: 1176 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNITPRLYTESSGASI 1226
>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
Length = 858
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 184/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +PS DD L
Sbjct: 472 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 531
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 532 PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 591
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 592 AKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHA 647
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 648 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEA--------VSKLLREHGYQSRG 699
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 700 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 745
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 746 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIAN 805
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SG+S+
Sbjct: 806 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGISV 856
>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
Length = 1232
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 185/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +P+ DD L
Sbjct: 846 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLRHGTYEKLDDDGLIA 905
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 906 PGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 965
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 966 AKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLIINPHA 1021
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 1022 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEA--------VSKLLREHGYQSRG 1073
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1074 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1119
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1120 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIAN 1179
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1180 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGVSI 1230
>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1255
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 178/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD---IQVKSRPSD----DMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D + +QV R D L K
Sbjct: 870 MNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERFEKPMRLDTLGMRKGTYDKLDEDGIVA 929
Query: 41 --IQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + AD S L+ TE G+V +VL+S+ +D
Sbjct: 930 PGVRVSGEDIIIGKTAPLAADAEELGQRTKAHTKIDVSTPLRSTENGIVDQVLISTGNDD 989
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 990 LKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHA 1045
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T VS+LL G ++ G
Sbjct: 1046 IPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVT--------VDSVSRLLREHGYQSRG 1097
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+F + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1098 FEVMFNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1143
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V +
Sbjct: 1144 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDDCGLMTPVAK 1203
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1204 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-SMNIAARMFTDRSGVSV 1254
>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
Length = 1291
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 185/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS E+++ + + +++K + DD L
Sbjct: 905 MNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPLRSDTLRLKHGTYEKLDDDGLIA 964
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 965 PGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 1024
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 1025 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHA 1080
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 1081 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEA--------VSKLLREHGYQSRG 1132
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1133 FEVMYHGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1178
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1179 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIAN 1238
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1239 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGVSV 1289
>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
[Leptosphaeria maculans JN3]
gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
[Leptosphaeria maculans JN3]
Length = 1360
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 180/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDN-KDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 974 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 1033
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +VL ++N +G
Sbjct: 1034 PGVRVSGDDIIIGKTAPIATDAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 1093
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 1094 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHA 1149
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA +G ATPF + +Q +S++L G + G
Sbjct: 1150 IPSRMTIAHLVECLLSKVGAIEGREGDATPFT----DITVDQ----ISEILESKGYQKRG 1201
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R+ IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1202 FEIMYNGHTGKKM--------------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQIL 1247
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C ++ + Q
Sbjct: 1248 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAQ 1307
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1308 LKKGQYECRPCQNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1358
>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 185/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +PS DD L
Sbjct: 847 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 906
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 907 PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 966
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 967 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPDLIINPHA 1022
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T I S+LL G ++ G
Sbjct: 1023 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTVEAI--------SKLLREHGYQSRG 1074
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1075 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPVQVL 1120
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1121 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIAN 1180
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SG+S+
Sbjct: 1181 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGISV 1231
>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
[Botryotinia fuckeliana]
Length = 1260
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 181/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+A D + ++ +P DD +
Sbjct: 875 MNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVA 934
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE GLV +VL+++N +G
Sbjct: 935 PGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEG 994
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG--FLEQ------------------- 122
F V +R + +GDKF+S HGQKG +G +++Q
Sbjct: 995 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHA 1050
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K GL ATPF TE VS+LL G + G
Sbjct: 1051 IPSRMTIAHLIECQLSKVSTLRGLEGDATPF--------TEVTVDSVSKLLRAHGYHSRG 1102
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1103 FEIMYHGHTGRKMM--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1148
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+I+HGAS L ERL C + + +
Sbjct: 1149 TRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHICDICGLMTPIAK 1208
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + I + ++PY AKLL QEL+ +M I + T+ SG+++
Sbjct: 1209 INTGSFECRPCKNKTKISQIHIPYAAKLLFQELA-AMNIATRMFTKRSGITV 1259
>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
Length = 1228
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 181/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G FRS +++ +D K ++ +PS DD L
Sbjct: 842 MNQSSIDRGFFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 901
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 902 PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 961
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 962 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHA 1017
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + GL A+PF T I S+LL G ++ G
Sbjct: 1018 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAI--------SKLLREHGYQSRG 1069
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1070 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1115
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A VI
Sbjct: 1116 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIAN 1175
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M IT + T+ SG S+
Sbjct: 1176 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNITPRLYTESSGASI 1226
>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 184/411 (44%), Gaps = 104/411 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +PS DD L
Sbjct: 847 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLKLKHGTYEKLDDDGLIA 906
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 907 PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 966
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 967 AKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPDLIINPHA 1022
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 1023 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTVEA--------VSKLLREHGYQSRG 1074
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1075 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPVQVL 1120
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1121 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIAN 1180
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVS 334
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SG+S
Sbjct: 1181 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGIS 1230
>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1255
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 178/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD---IQVKSRPSD----DMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D + +QV R D L K
Sbjct: 870 MNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERFEKPMRIDTLGMRKGTYDKLDEDGIVA 929
Query: 41 --IQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + AD S L+ TE G+V +VL+S+ +D
Sbjct: 930 PGVRVSGEDIIIGKTAPLAADAEELGQRTKAHTKIDVSTPLRSTENGIVDQVLVSTGNDD 989
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 990 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHA 1045
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T VS+LL G ++ G
Sbjct: 1046 IPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVT--------VDSVSRLLREHGYQSRG 1097
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+F + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1098 FEVMFNGHTGRKMV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1143
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V +
Sbjct: 1144 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAK 1203
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1204 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-SMNIAARMFTDRSGVSV 1254
>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
Y-27907]
Length = 1238
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 182/409 (44%), Gaps = 104/409 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +PS DD L
Sbjct: 852 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 911
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 912 PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 971
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 972 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHA 1027
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K A GL A+PF T VS+LL G ++ G
Sbjct: 1028 IPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEA--------VSRLLREHGYQSRG 1079
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1080 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1125
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1126 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMSVIAN 1185
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SG
Sbjct: 1186 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRMYTERSG 1233
>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1240
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 184/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +PS +D L
Sbjct: 854 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKLLETFEKPSRSDTLRLKHGTYEKLDEDGLIA 913
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK I AD S L+ TE G+V +VLL++N DG
Sbjct: 914 PGIRVSGEDIIIGKTTPIPADTEELGQRTLHHSKRDASTPLRSTESGIVDQVLLTTNGDG 973
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 974 SKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHA 1029
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G A+PF T I ++LL G ++ G
Sbjct: 1030 IPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTAEAI--------AKLLREHGYQSRG 1081
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1082 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1127
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1128 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIAN 1187
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1188 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGVSI 1238
>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
Length = 1262
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 180/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD-NKDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIATDAAELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF V +Q VSQLL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPFT----DVTVDQ----VSQLLENAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R+ IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------------KCKNVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + + CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 LKKNLYE---CRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
Length = 1262
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDN-KDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1209
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris CBS
7435]
Length = 1227
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 182/414 (43%), Gaps = 104/414 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNK---------DIQVKSRPSDDMLNFGK----------- 40
MNQ+S++ G+FRS +++ +D + + + +R + L G
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKRFGISIVEEFEKPTRATTLRLKHGTYEKLDEDGLIA 900
Query: 41 --IQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N +G
Sbjct: 901 PGVRVSGDDIIIGKTTPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ G ATPF T VS LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVGSIRGYEGDATPFTDLTVDA--------VSNLLRDNGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIAN 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSMAA 337
+ + CR C + +I + ++PY AKLL QEL +M I + T+ SGVSM +
Sbjct: 1175 LKKNQFECRSCKNKTNIYQLHIPYAAKLLFQEL-MAMNIAPRLYTERSGVSMRS 1227
>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
Length = 1252
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDN-KDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 866 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 925
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 926 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 985
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 986 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHA 1041
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1042 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1093
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1094 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1139
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1140 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1199
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1200 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1250
>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD-NKDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1209
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD-NKDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1209
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD-NKDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1209
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
Length = 1262
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDN-KDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1209
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
Length = 1262
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDN-KDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1209
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp. S-93-48]
Length = 1262
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDN-KDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1209
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
Length = 1229
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 180/413 (43%), Gaps = 106/413 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D + ++ +P+ DD L
Sbjct: 843 MNQSSIDRGLFRSLFFRSYMDQERRVGMSVVEEFEKPTRADTLRMKHGTYDKLDDDGLVC 902
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +VLL++N +G
Sbjct: 903 PGVRVSGEDIIIGKTAPIPPDAEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEG 962
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 963 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVVPDIIINPHA 1018
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +C GL ATPF T I S+LL G ++ G
Sbjct: 1019 IPSRMTVAHLIECLLSKVSCLSGLEGDATPFTDVTVDAI--------SKLLRSHGYQSRG 1070
Query: 177 ITFIFK-HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
++ H + +C F T+YQ+ HM +DK+ R G Q
Sbjct: 1071 FEVMYHGHTGKKIMAQC---------------FLGPTYYQRLRHMVDDKIHARARGPVQI 1115
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQ 283
LT +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A NVI
Sbjct: 1116 LTRQPVEGRSREGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRIHVCGVCGSMNVIA 1175
Query: 284 RVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + I + +PY AKLL QEL +M I + + SG S+
Sbjct: 1176 NLKKNQFECRSCRNKTKIYQVQIPYAAKLLFQEL-MAMNIAPRLFSDRSGYSV 1227
>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
Length = 1262
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDN-KDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE +S LL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPF--------TEVTVDEISDLLEQAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RVQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A + I
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAS 1209
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G Y CR C++ I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1210 IKKGMYECRPCHNKTRISQIHIPYAAKLLFQEL-LAMNIATRMFTDRSGLSV 1260
>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
RIB40]
Length = 1221
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D++ ++ +P D + K
Sbjct: 836 MNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRQDTIGMRKGTYDKLDEDGIIA 895
Query: 41 --IQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 896 PGVRVSGEDIIIGKTAPLAPDAEELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDD 955
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 956 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAPDLVINPHA 1011
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T VS+LL G ++ G
Sbjct: 1012 IPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVT--------VDSVSRLLREHGYQSRG 1063
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1064 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1109
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V +
Sbjct: 1110 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAK 1169
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1170 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-SMNIAARMFTNRSGVSV 1220
>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 172/404 (42%), Gaps = 105/404 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 803 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAP 862
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D+VIGK I D HS L+H+E G+V +VLL++N DG
Sbjct: 863 PGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLR 922
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 923 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIP 978
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 979 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1030
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L S+IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1031 TMYNGHTGRRL--------------TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1076
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1077 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIA--IANL 1134
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+ CR C + DI++ ++PY KLL QEL SM I + T
Sbjct: 1135 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MSMAIAPRMLT 1177
>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae 3.042]
Length = 1254
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D++ ++ +P D + K
Sbjct: 869 MNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRQDTIGMRKGTYDKLDEDGIIA 928
Query: 41 --IQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 929 PGVRVSGEDIIIGKTAPLAPDAEELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDD 988
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 989 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAPDLVINPHA 1044
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T VS+LL G ++ G
Sbjct: 1045 IPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVT--------VDSVSRLLREHGYQSRG 1096
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1097 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1142
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V +
Sbjct: 1143 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAK 1202
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1203 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-SMNIAARMFTNRSGVSV 1253
>gi|224077112|ref|XP_002305137.1| predicted protein [Populus trichocarpa]
gi|222848101|gb|EEE85648.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 126/406 (31%), Positives = 174/406 (42%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 33 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 92
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHSI L+H+E G+V +VLL++N DG
Sbjct: 93 PGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGMVDQVLLTTNADGLR 152
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 153 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 208
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S+ L+ G + G
Sbjct: 209 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFE 260
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 261 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 306
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK--NVANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +AN+ +
Sbjct: 307 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK 366
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 367 NSF---ECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTK 408
>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
24927]
Length = 1258
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 183/415 (44%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS Y+A +D N +++K + DD L
Sbjct: 873 MNQSSIDRGLFRSLFYRAYMDSEKRIGMTTIEEFEKPMRNNTLRLKHGTYDKLDDDGLVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +V+L++N +G
Sbjct: 933 PGVRVSGEDIIIGKTAPIPADTEELGQRTKNHTKRDVSTPLRSTENGIVDQVMLTTNAEG 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 MRFVKVRMRTT----KVPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGIVPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF TE VS+LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGFEGDATPF--------TEVTVENVSRLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + +C V F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGH----------TGKKLVCQV----FLGPTYYQRLRHMVDDKIHARARGPVQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------------KCKNVAN 280
T +PV R R GG+ FGEM+ DC+I+HGAS L ERL +AN
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHVCDICGLMTPIAN 1206
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + + CR C + I + ++PY AKLL QEL+ +M I + ++ SGV++
Sbjct: 1207 LKKNLFE---CRPCRNKTKISQIHLPYAAKLLFQELT-AMNIAARMYSKRSGVTI 1257
>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 173/406 (42%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 812 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 871
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HS L+H+E G+V +VLL++N DG
Sbjct: 872 PGTRCSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLR 931
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 932 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIP 987
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 988 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1039
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L S+IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1040 TMYNGHTGRRL--------------SSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1085
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN+ +
Sbjct: 1086 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKK 1145
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ ++PY KLL QEL SM I + T+
Sbjct: 1146 NSFE---CRGCKNKTDIVQVHIPYACKLLFQEL-MSMAIAPRMLTK 1187
>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
Length = 1255
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 176/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y++ D + ++ +P DD +
Sbjct: 870 MNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVA 929
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK A I D S L+ TE G+V +VLL++N +G
Sbjct: 930 PGVRVSGEDMIIGKTAPIPPDSEELGQRTKLHVKRDASTPLRSTENGIVDQVLLTTNAEG 989
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 990 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHA 1045
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF TE VS++L G ++ G
Sbjct: 1046 IPSRMTIAHLIECQLSKVSALRGFEGDATPF--------TEVTVDSVSKILRAHGYQSRG 1097
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1098 FEVMYNAHTGLKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1143
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V
Sbjct: 1144 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPVAN 1203
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
CR C + I + ++PY AKLL QEL+ SM I + T SG+S+
Sbjct: 1204 LKKNSFECRPCKNKTRISQVHIPYAAKLLFQELA-SMNIAARMYTTRSGLSV 1254
>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
10762]
Length = 1254
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 181/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------------------IQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y+A +D + +++K D + + G I
Sbjct: 869 MNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQFEKPVRSDTLKMKGGTYDKLDDDGIIS 928
Query: 43 SKS----GDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
S DI+IGK A I D S L+ TE G+V +VLL++N +G
Sbjct: 929 PGSRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEG 988
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 989 LKFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLTPDIIINPHA 1044
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF T + +S LL G + G
Sbjct: 1045 IPSRMTIAHLIECLLSKVGALTGQEGDATPFTDVT--------LTSISTLLEEHGFQRRG 1096
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1097 FEVMYNGHTGKKL--------------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1142
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C+ +A
Sbjct: 1143 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIAK 1202
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ + CR C + + I + +PY AKLL QEL+ +M + + T SGVS+
Sbjct: 1203 LKEKTI---ECRQCRNKNRIAQVIIPYAAKLLFQELA-AMNVATRMFTDRSGVSI 1253
>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 1194
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 174/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 806 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAP 865
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHSI L+H+E G+V +VLL++N DG
Sbjct: 866 PGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLR 925
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 926 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 982 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1033
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1034 TMYNGHTGRRL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1137
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTK 1181
>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
Length = 1199
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 125/403 (31%), Positives = 170/403 (42%), Gaps = 101/403 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 811 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 870
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHSI L+H+E G+V +VLL++N DG
Sbjct: 871 PGTRVSGEDVIIGKTTPISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLR 930
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 931 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 986
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 987 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1038
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1039 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1084
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------------KCKNVANVIQRVV 286
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C + +
Sbjct: 1085 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKK 1144
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ +PY KLL QEL +M I + T+
Sbjct: 1145 SSFECRGCKNKTDIVQVYIPYACKLLFQEL-MAMAIAPRMFTK 1186
>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 1743
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 177/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 1358 MNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 1417
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 1418 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 1477
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 1478 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHA 1533
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S LL G ++ G
Sbjct: 1534 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SSLLREHGYQSRG 1585
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ Y L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1586 FEVMYNGYTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1631
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1632 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAK 1691
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + + I + ++PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1692 LKKGDFECRACKNKNKISQVHIPYAAKLLFQEL-MSMNIAARMFTKRSGVSL 1742
>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/405 (31%), Positives = 175/405 (43%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP+ DD L
Sbjct: 836 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAP 895
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + I D HS L+H+E G+V +VLL++N DG
Sbjct: 896 PGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLR 955
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 956 FVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIP 1011
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 1012 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1063
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1064 TMYNGHTGRKL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1109
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL KC +A I +
Sbjct: 1110 QPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA--IANL 1167
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + TQ
Sbjct: 1168 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTQ 1211
>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/405 (31%), Positives = 175/405 (43%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP+ DD L
Sbjct: 832 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAP 891
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + I D HS L+H+E G+V +VLL++N DG
Sbjct: 892 PGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLR 951
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 952 FVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIP 1007
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 1008 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1059
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1060 TMYNGHTGRKL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1105
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL KC +A I +
Sbjct: 1106 QPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA--IANL 1163
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + TQ
Sbjct: 1164 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTQ 1207
>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 173/406 (42%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 804 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAP 863
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HSI L+H+E G+V +VLL++N DG
Sbjct: 864 PGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 923
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 924 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIP 979
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 980 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1031
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1032 RMYNGHTGRPL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1077
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL ++ +AN+ +
Sbjct: 1078 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKK 1137
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ +PY KLL QEL SM I + T+
Sbjct: 1138 NSFE---CRGCKNKTDIVQVYIPYACKLLFQEL-MSMAIAPRMLTK 1179
>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
Length = 733
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 171/393 (43%), Gaps = 79/393 (20%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 345 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 404
Query: 39 GKIQSKSGDIVIGKYAEIGAD---------------HSIKLKHTERGLVLKVLLSSNDDG 83
+ D++IGK I D HS L+H+E G+V +VLL++N DG
Sbjct: 405 PGTRVSGEDVIIGKTTPIAPDEATQGGPAARYTKRDHSTSLRHSETGIVDQVLLTTNADG 464
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGL 140
F V +R V +GDKFSS HGQKG +G E P + +G C +
Sbjct: 465 LRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI------EGICPDI 514
Query: 141 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIA 198
+ P A + I + + + ++ +G F + L +C
Sbjct: 515 I--VNPHAIPSRMTIGQLIECIMGKVAAXMGKEGDATPFTDVTVDNISKALHKCGYQMRG 572
Query: 199 FICL--------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 250
F + + + IF T+YQ+ HM +DK+ R G Q LT +P R R GG+
Sbjct: 573 FETMYNGHTGRRLPAXIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 632
Query: 251 EFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY-CRICNS 296
FGEM+ DC+IAHGA+ L ERL +C VA I + + CR C +
Sbjct: 633 RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLVA--IANLKKNSFECRGCKN 690
Query: 297 ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
DI++ ++PY KLL QEL SM I + T+
Sbjct: 691 KTDIVQVHIPYACKLLFQEL-MSMAIAPRMMTK 722
>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
Length = 1188
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 173/406 (42%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 804 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAP 863
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HSI L+H+E G+V +VLL++N DG
Sbjct: 864 PGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 923
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 924 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIP 979
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 980 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1031
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1032 RMYNGHTGRPL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1077
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL ++ +AN+ +
Sbjct: 1078 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKK 1137
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ +PY KLL QEL SM I + T+
Sbjct: 1138 NSFE---CRGCKNKTDIVQVYIPYACKLLFQEL-MSMAIAPRMLTK 1179
>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
polypeptide; AltName: Full=Protein EMBRYO DEFECTIVE 1989
gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 173/406 (42%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 804 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAP 863
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HSI L+H+E G+V +VLL++N DG
Sbjct: 864 PGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 923
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 924 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIP 979
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 980 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1031
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1032 RMYNGHTGRPL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1077
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL ++ +AN+ +
Sbjct: 1078 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKK 1137
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ +PY KLL QEL SM I + T+
Sbjct: 1138 NSFE---CRGCKNKTDIVQVYIPYACKLLFQEL-MSMAIAPRMLTK 1179
>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
Length = 1275
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 182/411 (44%), Gaps = 104/411 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + ++ +P DD L
Sbjct: 890 MNQSSIDRGLFRSLFFRSYMDQERRSGISVVEEFEKPMRSSTLGFKQGTYEKLDDDGLIA 949
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N +G
Sbjct: 950 PGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNAEG 1009
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
FA V +R + +GDKF+S HGQKG +G E P
Sbjct: 1010 LKFAKVRMRTT----KVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHA 1065
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T VS+LL G ++ G
Sbjct: 1066 IPSRMTVAHLIECLLSKVASMRGYEGDATPFTDLTVDA--------VSKLLRENGYQSRG 1117
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G +Q L
Sbjct: 1118 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPYQNL 1163
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +P+ R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1164 TRQPMEGRARDGGLRFGEMERDCMIAHGAAGFLKERLMDSSDAFRVHICGICGLMSVIAN 1223
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVS 334
+ + C+ C + +I + ++PY AKLL QEL SM I + TQ SGV+
Sbjct: 1224 LKKNQFECKSCKNKTNIYQIHIPYAAKLLFQEL-MSMNIAPRLYTQKSGVT 1273
>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
Length = 1028
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 182/413 (44%), Gaps = 106/413 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-----------------SDDMLN 37
MNQ+S++ G+FRS Y+ D++ ++ +P D ++N
Sbjct: 643 MNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVN 702
Query: 38 FGKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDD 82
G ++ DI+IGK A + D S L+ TE G+V +VL+++ D
Sbjct: 703 PG-VRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPD 761
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
++ S++ + M +GDKF+S HGQKG +G E P
Sbjct: 762 ----SLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPH 817
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
A L+E L K A G ATPF T I S+LL G ++
Sbjct: 818 AIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSI--------SRLLREHGYQSR 869
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + L + +F T+YQ+ HM +DK+ R G Q
Sbjct: 870 GFEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQI 915
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + +
Sbjct: 916 LTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIA 975
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G CR+CN+ I + ++PY AKLL QEL+ +M I+ + T SGVS+
Sbjct: 976 KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-AMNISARMFTNRSGVSV 1027
>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 173/406 (42%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 804 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAP 863
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HSI L+H+E G+V +VLL++N DG
Sbjct: 864 PGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 923
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 924 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIP 979
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 980 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1031
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1032 RMYNGHTGRPL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1077
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL ++ +AN+ +
Sbjct: 1078 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKK 1137
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ +PY KLL QEL SM I + T+
Sbjct: 1138 NSFE---CRGCKNKTDIVQVYIPYACKLLFQEL-MSMAIAPRMLTK 1179
>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 1256
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D++ ++ +P D + K
Sbjct: 871 MNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIA 930
Query: 41 --IQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 931 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDD 990
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 991 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVAPDLIINPHA 1046
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T I S+LL G ++ G
Sbjct: 1047 IPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSI--------SRLLREHGYQSRG 1098
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1099 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1144
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1145 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAK 1204
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1205 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-SMNIAARMFTNRSGVSV 1255
>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
nidulans FGSC A4]
Length = 1252
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 182/413 (44%), Gaps = 106/413 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-----------------SDDMLN 37
MNQ+S++ G+FRS Y+ D++ ++ +P D ++N
Sbjct: 867 MNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVN 926
Query: 38 FGKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDD 82
G ++ DI+IGK A + D S L+ TE G+V +VL+++ D
Sbjct: 927 PG-VRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPD 985
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
++ S++ + M +GDKF+S HGQKG +G E P
Sbjct: 986 ----SLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPH 1041
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
A L+E L K A G ATPF T I S+LL G ++
Sbjct: 1042 AIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSI--------SRLLREHGYQSR 1093
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + L + +F T+YQ+ HM +DK+ R G Q
Sbjct: 1094 GFEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQI 1139
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + +
Sbjct: 1140 LTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIA 1199
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ G CR+CN+ I + ++PY AKLL QEL+ +M I+ + T SGVS+
Sbjct: 1200 KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-AMNISARMFTNRSGVSV 1251
>gi|67515346|gb|AAY68202.1| RNA polymerase IV second largest subunit [Lycopodium sp. JL-2005]
Length = 510
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 159/318 (50%), Gaps = 90/318 (28%)
Query: 1 MNQASLECGVFRSESY-------KAEVDNK-------DIQ-VKSRPSDDMLN---FGKIQ 42
MNQ+S+E G++R+ Y A VD + D+ + + S+D L+ F I
Sbjct: 225 MNQSSIERGLYRTMHYHTFHFDIPANVDEEFRKPSASDVGGTRYQGSNDKLDNEGFPYIG 284
Query: 43 S--KSGDIVIGKYAEIG-----ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
+ S DIV GK + +D S++LKHTE G V +V+LS ++DGK A V +R+S
Sbjct: 285 AALSSPDIVAGKVTSVPNSSRLSDRSVRLKHTEMGRVDRVVLSMDEDGKKHARVRLRES- 343
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLE 129
+GDKFSSMHGQKG+LG + QT Q+LE
Sbjct: 344 ---RMPQVGDKFSSMHGQKGILGMVFNQEDLPFTQEGIVPDIIINPHAFPSRQTLGQMLE 400
Query: 130 AALGKGACDG-LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 188
+ LGK +G + ATP ++ + +T+ LL+ G G
Sbjct: 401 SVLGKAVANGCCQNDATPSSSISVESLTD--------LLHRSGYERWGK----------- 441
Query: 189 LFECPMDWIAFIC------LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
EC +C ++++ IF TFYQ+ IHM++DK+K+R TG PL+ +PVA
Sbjct: 442 --EC-------MCNGRTGHMLKARIFMGPTFYQRLIHMAQDKLKWRRTGPVHPLSRQPVA 492
Query: 243 DRKRFGGIEFGEMKCDCL 260
DRKR GG++FGEM+ DCL
Sbjct: 493 DRKRHGGVKFGEMERDCL 510
>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Mycosphaerella populorum SO2202]
Length = 1260
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 182/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS ++A +D + ++ +P+ DD +
Sbjct: 875 MNQSSIDRGLFRSLFFRAYMDQEKRVGMSVVEAFEKPTRSDTMRMKQGSYDKLDDDGIVA 934
Query: 39 GKIQSKSGDIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A E+G D S L+ TE GL+ +VLL++N +G
Sbjct: 935 PGARVSGDDIIIGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENGLIDQVLLTTNTEG 994
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R V V +GDKF+S HGQKG +G E P
Sbjct: 995 LRF--VKVRTRVTKVPQ--IGDKFASRHGQKGTIGITYRQEDMPFSADGLTPDIIINPHA 1050
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF T + VSQ+L G + G
Sbjct: 1051 IPSRMTIAHLIECLLSKVGALQGQEGDATPFTDVT--------VTSVSQILAAAGFQQRG 1102
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1103 FEVMYNGHTGKKL--------------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1148
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CK--NVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C+ + I
Sbjct: 1149 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIAS 1208
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + I + +PY AKLL QEL+ +M + + T SG+S+
Sbjct: 1209 IKKQQFECRPCKNKTKIAQVIIPYAAKLLFQELA-AMNVATRMFTDRSGISI 1259
>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
Length = 1232
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 181/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS ++ +D K ++ +PS DD L
Sbjct: 846 MNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 905
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 906 PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 965
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 966 AKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHA 1021
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 1022 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEA--------VSKLLREHGYQSRG 1073
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1074 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1119
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A VI
Sbjct: 1120 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMTVIAN 1179
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ S S+
Sbjct: 1180 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRMYTERSQNSI 1230
>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
kawachii IFO 4308]
Length = 1256
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D++ ++ +P D + K
Sbjct: 871 MNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIA 930
Query: 41 --IQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 931 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDD 990
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 991 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHA 1046
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S+LL G ++ G
Sbjct: 1047 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SRLLREHGYQSRG 1098
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1099 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1144
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V +
Sbjct: 1145 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAK 1204
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1205 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-SMNIAARMFTNRSGVSV 1255
>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
513.88]
Length = 1231
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D++ ++ +P D + K
Sbjct: 846 MNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIA 905
Query: 41 --IQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 906 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDD 965
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 966 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHA 1021
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S+LL G ++ G
Sbjct: 1022 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SRLLREHGYQSRG 1073
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1074 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1119
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V +
Sbjct: 1120 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAK 1179
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1180 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-SMNIAARMFTNRSGVSV 1230
>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1193
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 173/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 806 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAP 865
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHSI L+H+E G+V +VLL++N DG
Sbjct: 866 PGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLR 925
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 926 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 982 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1033
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1034 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1137
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ +PY KLL QEL +M I + T+
Sbjct: 1138 KKNSFECRGCKNKTDIVQVYIPYACKLLFQEL-MAMAIAPRMLTK 1181
>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
Length = 1255
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 176/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y++ D + ++ +P DD +
Sbjct: 870 MNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVA 929
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK A I D S L+ TE G+V +VLL++N +G
Sbjct: 930 PGVRVSGEDMIIGKTAPIPPDSEELGQRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEG 989
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 990 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHA 1045
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF TE VS++L G ++ G
Sbjct: 1046 IPSRMTIAHLIECQLSKVSALRGFEGDATPF--------TEVTVDSVSKILRAHGYQSRG 1097
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1098 FEVMYNAHTGQKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1143
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V
Sbjct: 1144 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPVAN 1203
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
CR C + I + ++PY AKLL QEL+ SM I + T SG+S+
Sbjct: 1204 LKKNSFECRPCKNKTRISQVHIPYAAKLLFQELA-SMNIAARMYTTRSGLSV 1254
>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
Length = 1256
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D++ ++ +P D + K
Sbjct: 871 MNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIA 930
Query: 41 --IQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 931 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDD 990
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 991 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHA 1046
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S+LL G ++ G
Sbjct: 1047 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SRLLREHGYQSRG 1098
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1099 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1144
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + V +
Sbjct: 1145 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAK 1204
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ SM I + T SGVS+
Sbjct: 1205 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-SMNIAARMFTNRSGVSV 1255
>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1192
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 173/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 806 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAP 865
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHSI L+H+E G+V +VLL++N DG
Sbjct: 866 PGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLR 925
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 926 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 982 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1033
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1034 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1137
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ +PY KLL QEL +M I + T+
Sbjct: 1138 KKNSFECRGCKNKTDIVQVYIPYACKLLFQEL-MAMAIAPRMLTK 1181
>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus A1163]
Length = 1255
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D++ ++ +P D + K
Sbjct: 870 MNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIA 929
Query: 41 --IQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 930 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDD 989
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 990 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLIINPHA 1045
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T I S+LL G ++ G
Sbjct: 1046 IPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSI--------SRLLREHGYQSRG 1097
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1098 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1143
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1144 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAK 1203
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1204 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-AMNIAARMFTNRSGVSV 1254
>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
181]
gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
181]
Length = 1255
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 178/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D + ++ +P D + K
Sbjct: 870 MNQSSIDRGLFRSLFYRTYTDTEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIA 929
Query: 41 --IQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 930 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDD 989
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 990 LKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLIINPHA 1045
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T I S+LL G ++ G
Sbjct: 1046 IPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSI--------SRLLREHGYQSRG 1097
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1098 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1143
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1144 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAK 1203
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1204 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-AMNIAARMFTNRSGVSV 1254
>gi|296412297|ref|XP_002835861.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629657|emb|CAZ80018.1| unnamed protein product [Tuber melanosporum]
Length = 436
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 180/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS Y++ +D N +++K + DD L
Sbjct: 50 MNQSSIDRGLFRSLFYRSYMDQEKRIGMQIVEEFEKPTRNNTLKLKHGTYDKLDDDGLIA 109
Query: 39 GKIQSKSGDIVIGKYAEIGAD----------H-----SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D H S L+ TE G+V +V+L++N +G
Sbjct: 110 PGVRVSGEDIIIGKTAPIAPDVDEMGQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAEG 169
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 170 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHA 225
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 226 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVT--------VDSVSTLLRQNGYQSRG 277
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ Y L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 278 FEVMYNGYTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 323
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------------KCKNVAN 280
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL +AN
Sbjct: 324 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPIAN 383
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + + CR C + I + ++PY AKLL QEL+ SM I + + SGVS+
Sbjct: 384 LKKNLFE---CRPCRNKTKISQIHLPYAAKLLFQELA-SMNIAARMYHKRSGVSV 434
>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1087
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 173/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 706 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAP 765
Query: 39 GKIQSKSGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 766 PGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLR 825
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 826 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 881
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S+ L+ G + G
Sbjct: 882 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFE 933
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 934 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 979
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 980 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1037
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 1038 KKSSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTK 1081
>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1278
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 177/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS E ++ +++K D + + G +
Sbjct: 893 MNQSSIDRGLFRSLFFRSYTDAEKRVGINLVEKFEKPYRQDTLRLKQGTYDKLEDDGIVA 952
Query: 43 SKS----GDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I D+ S L+ TE G+V +V+L++N DG
Sbjct: 953 PGTRVSGEDIIIGKTAPIQPDNQELGQRTVQHVKRDASTPLRSTESGIVDQVILTTNQDG 1012
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1013 LKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHA 1068
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF TE VS+LL ++ G
Sbjct: 1069 IPSRMTIAHLIECLLSKVATIKGFEGDATPF--------TEVTVDSVSKLLREYDYQSRG 1120
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1121 FEVLYHGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIM 1166
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C + +
Sbjct: 1167 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIAD 1226
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + I + ++PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1227 LTKGTFECRPCKNKTKIAQVHIPYAAKLLFQELA-AMNIATRMFTDRSGVSI 1277
>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
polypeptide
gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 173/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 803 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAP 862
Query: 39 GKIQSKSGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 863 PGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLR 922
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 923 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 978
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 979 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1030
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1031 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1076
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1077 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1134
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 1135 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTK 1178
>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
VaMs.102]
gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
VaMs.102]
Length = 1260
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 180/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS E ++ N +++K + DD +
Sbjct: 875 MNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVA 934
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + I D+ S L+ TE G++ V+L++N DG
Sbjct: 935 PGVRVSGEDIIIGKTSPINPDNQELGQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDG 994
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 995 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHA 1050
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF T VSQLL G ++ G
Sbjct: 1051 IPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVT--------VDSVSQLLRDQGYQSRG 1102
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1103 FEVMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1148
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1149 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIAN 1208
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SGVS+
Sbjct: 1209 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTDRSGVSI 1259
>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1195
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 173/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 807 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAP 866
Query: 39 GKIQSKSGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 867 PGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLR 926
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 927 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIP 982
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 983 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1034
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1035 TMYNGHTGRRL--------------PAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1080
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1081 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1138
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 1139 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTK 1182
>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans WO-1]
Length = 1234
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 182/408 (44%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +P+ +D L
Sbjct: 848 MNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIA 907
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I AD S L+ TE G+V +VLL++N DG
Sbjct: 908 PGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 967
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 968 SKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHA 1023
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G A+PF V TEQ +S LL G ++ G
Sbjct: 1024 IPSRMTVAHLIECLLSKVSSLSGFEGDASPFT----DVTTEQ----ISTLLRDHGYQSRG 1075
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1076 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1121
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1122 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIAN 1181
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ S
Sbjct: 1182 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERS 1228
>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
lozoyensis 74030]
Length = 1263
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 181/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+A D + ++ +P DD +
Sbjct: 878 MNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPFRSDTLKLKHGTYDKLDDDGIVA 937
Query: 39 GKIQSKSGDIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A E+G D S L+ TE G+V +VL+++N +G
Sbjct: 938 PGVRVSGEDIIIGKTAPMAPDAEELGQRTKAHTKRDASTPLRSTENGIVDQVLITTNAEG 997
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF---LEQTP---------------- 124
F V +R + +GDKF+S HGQKG +G +E P
Sbjct: 998 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRMEDMPFTSQGIVPDLIINPHA 1053
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GL ATPF TE VS+LL G ++ G
Sbjct: 1054 IPSRMTIAHLIECQLSKVSTLRGLEGDATPF--------TEVTVDSVSKLLRDHGYQSRG 1105
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1106 FEIMYHGHTGRKMM--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1151
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+I+HGA+ L ERL C + + +
Sbjct: 1152 TRQPVEGRARDGGLRFGEMERDCMISHGAAAFLKERLFEVSDAFRVHLCDICGLMTPIAK 1211
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
CR C + I + ++PY AKLL QEL+ SM I + T+ SG+S+
Sbjct: 1212 LQSQNFECRSCKNKTRISQIHIPYAAKLLFQELA-SMNIAARMFTERSGISV 1262
>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera]
gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
Length = 1193
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 174/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP+ DD L
Sbjct: 805 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 864
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HS L+H+E G+V +VLL++N DG
Sbjct: 865 PGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLR 924
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 925 FVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 980
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 981 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1032
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1033 TMYNGHTGRRL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1078
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1079 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1136
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 1137 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTK 1180
>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
Length = 1234
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 182/408 (44%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +P+ +D L
Sbjct: 848 MNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIA 907
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I AD S L+ TE G+V +VLL++N DG
Sbjct: 908 PGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 967
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 968 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHA 1023
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G A+PF V TEQ +S LL G ++ G
Sbjct: 1024 IPSRMTVAHLIECLLSKVSSLSGFEGDASPFT----DVTTEQ----ISTLLRDHGYQSRG 1075
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1076 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1121
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1122 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIAN 1181
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ S
Sbjct: 1182 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERS 1228
>gi|67515352|gb|AAY68205.1| RNA polymerase IV second largest subunit [Sphagnum sp. JL-2005]
Length = 650
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 173/382 (45%), Gaps = 62/382 (16%)
Query: 1 MNQASLECGVFRSESYK----AEVDNKDIQVKSRPS------------------------ 32
MNQAS++ G+FRS YK E N D S+PS
Sbjct: 278 MNQASIDRGLFRSAHYKIHRGEERKNVDEHF-SKPSISDHKGWTHAWSGLDYKACLDKVD 336
Query: 33 DDMLNFGKIQSKSGDIVIGKY-AEIG----ADHSIKLKHTERGLVLKVLLSSNDDGKNFA 87
DD G+IVIGK AE G ++ S LK ++G V +VLL++ +DG +
Sbjct: 337 DDGFPCVGENLTKGNIVIGKLTAEQGRPKLSNTSTHLKLHQKGHVDQVLLANEEDGHRIS 396
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPF 147
V +R + GDKFSS+HGQKGV+G + P + L D +++
Sbjct: 397 KVRLR----FTRAPQAGDKFSSLHGQKGVIGAV--FPQEDLPYTRQGIVPDIIINPHALP 450
Query: 148 ATSTGGVITE--QHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWI---AFICL 202
+ T G I E + + C R + + F + +++
Sbjct: 451 SRQTFGQIMECLLGEVVATSGKPCFATRAETPQRVNELLFQYHYGRGGAEYMCNGTTGMP 510
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTG-SFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
+ +LI TFYQ+ HM EDK+KFR G S PLT +PV DR GG++FGEM+ DC++
Sbjct: 511 LEALITMGPTFYQRLDHMVEDKIKFRGIGGSINPLTHQPVRDRNSLGGVKFGEMERDCML 570
Query: 262 AHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYG 308
HGAS L R C+ A + + P C C + I++ +PY
Sbjct: 571 GHGASSTLRXRYFLLSDPYKMNICAACRRPATMDTKXT--PKCXXCKNGKRIVQIQIPYA 628
Query: 309 AKLLSQELSFSMGITLKFDTQL 330
KLL QEL SMGI++ DT+L
Sbjct: 629 CKLLWQEL-LSMGISVYMDTKL 649
>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
VdLs.17]
Length = 1260
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 180/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS E ++ N +++K + DD +
Sbjct: 875 MNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVA 934
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + I D+ S L+ TE G++ V+L++N DG
Sbjct: 935 PGVRVSGEDIIIGKTSPINPDNQELGQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDG 994
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 995 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHA 1050
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF T VSQLL G ++ G
Sbjct: 1051 IPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVT--------VDSVSQLLRDQGYQSRG 1102
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1103 FEVMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1148
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1149 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIAN 1208
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SGVS+
Sbjct: 1209 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTDRSGVSI 1259
>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1258
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 176/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTAPLAPDAEELGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRTRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGITPDIIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SGLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQIFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + + I + ++PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1207 LKKGDFECRACKNKNKISQVHIPYAAKLLFQEL-MSMNIAARMFTKRSGVSL 1257
>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
10500]
gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
10500]
Length = 1256
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 182/412 (44%), Gaps = 103/412 (25%)
Query: 1 MNQASLECGVFRSESYKA--EVDNK----DIQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ E + K I+ +P DD L
Sbjct: 870 MNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGMRKGTYDKIEDDGLVA 929
Query: 39 GKIQSKSGDIVIGKYA-------EIG--------ADHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A E+G D S L+ TE G+V +VLL++ +D
Sbjct: 930 PGVRVTGEDIIIGKTAPLAPESEELGQRTKAHTKVDVSTPLRATESGIVDQVLLTTGND- 988
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ +V +R + +GDKF+S HGQKG +G E P
Sbjct: 989 PDLRLVKVRMRTTKIPQ--IGDKFASRHGQKGTIGITYRHEDMPFTREGVVPDLIINPHA 1046
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS+LL G ++ G
Sbjct: 1047 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVT--------VDSVSRLLREHGYQSRG 1098
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L ++ +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1099 FEVMYNGHTGKKL--------------KAQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1144
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1145 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAK 1204
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1205 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-AMNIAARMFTDRSGVSI 1255
>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
18224]
gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
18224]
Length = 1254
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 182/412 (44%), Gaps = 103/412 (25%)
Query: 1 MNQASLECGVFRSESYKA--EVDNK----DIQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ E + K I+ +P DD L
Sbjct: 868 MNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGMRKGTYDKIEDDGLVA 927
Query: 39 GKIQSKSGDIVIGKYA-------EIG--------ADHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A E+G D S L+ TE G+V +VLL++ +D
Sbjct: 928 PGVRVTGEDIIIGKTAPLAPESEELGQRTKAHTKVDVSTPLRATESGIVDQVLLTTGND- 986
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ +V +R + +GDKF+S HGQKG +G E P
Sbjct: 987 PDLRLVKVRMRTTKIPQ--IGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHA 1044
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS+LL G ++ G
Sbjct: 1045 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVT--------VDSVSRLLREHGYQSRG 1096
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L ++ +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1097 FEVMYNGHTGKKL--------------KAQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1142
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1143 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAK 1202
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1203 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-AMNIAARMFTDRSGVSI 1253
>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
brasiliensis Pb03]
gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
brasiliensis Pb18]
Length = 1258
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 176/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTAPLAPDAEELGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRTRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGITPDIIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SGLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQIFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + + I + ++PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1207 LKKGDFECRACKNKNKISQVHIPYAAKLLFQEL-MSMNIAARMFTKRSGVSL 1257
>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1213
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 173/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 825 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAP 884
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + DHSI L+H+E G+V +VLL++N DG
Sbjct: 885 PGTRVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLR 944
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 945 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 1000
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 1001 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1052
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1053 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1098
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1099 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1156
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ +PY KLL QEL +M I + T+
Sbjct: 1157 KKNSFECRGCKNKTDIVQVYIPYACKLLFQEL-MAMAIAPRMLTK 1200
>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 174/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP+ DD L
Sbjct: 842 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAP 901
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + I D HS L+H+E G+V +VLL++N DG
Sbjct: 902 PGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLR 961
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 962 FVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIP 1017
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 1018 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1069
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1070 TMYNGHTGRKL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1115
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL KC +A I +
Sbjct: 1116 QPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA--IANL 1173
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + T
Sbjct: 1174 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTH 1217
>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
SLH14081]
gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
SLH14081]
Length = 1258
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 176/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ Y L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGYTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
CR C + + I + ++PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1207 LKKSDFECRACKNKNKISQVHIPYAAKLLFQEL-MSMNIAARLFTKRSGVSL 1257
>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
ER-3]
gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1258
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 176/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ Y L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGYTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
CR C + + I + ++PY AKLL QEL SM I + T+ SGVS+
Sbjct: 1207 LKKSDFECRACKNKNKISQVHIPYAAKLLFQEL-MSMNIAARLFTKRSGVSL 1257
>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
phaseolina MS6]
Length = 1258
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 179/416 (43%), Gaps = 108/416 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y++ D + ++ +P DD +
Sbjct: 868 MNQSSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPMRSDTMRLKHGTYDKLDDDGVVA 927
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +VLL++N DG
Sbjct: 928 PGVRVSGEDIIIGKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTENGIVDQVLLTTNSDG 987
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 988 LKFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTPDLIINPHA 1043
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF T +T+ VS LL G ++ G
Sbjct: 1044 IPSRMTIAHLIECLLSKVGALRGQEGDATPFTDVT---VTQ-----VSSLLREHGYQSRG 1095
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1096 FEIMYNGHTGKKLT--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1141
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANV-------IQRVVGG 288
T +PV R R GG+ FGEM+ DC+I+HGAS L ERL + + V + +
Sbjct: 1142 TRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAYRVHICEICGLMTPIAC 1201
Query: 289 PY---------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
P CR C + I + +PY AKLL QEL+ SM I + T+ SG S+
Sbjct: 1202 PRSNLKRNQFECRPCKNKTKIAQIYIPYAAKLLFQELA-SMNIASRMYTKRSGYSV 1256
>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
str. Neff]
Length = 1196
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 175/392 (44%), Gaps = 105/392 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNK------DIQVKSRPSDDML-----NFGKIQSK----- 44
MNQ+S++ G FRS Y++ VD++ D + + +D + ++ KI+
Sbjct: 822 MNQSSVDRGFFRSVFYRSYVDSEKHMGQYDEEFEKPIREDTMGMRHGSYEKIEDDGLIAP 881
Query: 45 ----SGD-IVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKNF 86
SGD I+IGK + D SI ++ +E G++ KV+LS+N DG F
Sbjct: 882 GTRVSGDDIIIGKTTPVSPNEEDTRAQRFSKKDSSISVRSSETGIIDKVMLSTNSDGYKF 941
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 124
V +R V + +GDKFSS HGQKG +G + E P
Sbjct: 942 CKVRVRS----VRTPQIGDKFSSRHGQKGTVGIMYRQEDMPFNIEGITPDIIVNPHAIPS 997
Query: 125 ----AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
QL+E +GK A G ATPF +T I S LL+ +G + G
Sbjct: 998 RMTIGQLIECLMGKVSATTGEEGDATPFTNTTVESI--------SDLLHGVGYQRRGNEV 1049
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
++ + L + F T+YQ+ HM +DK+ R G Q LT +
Sbjct: 1050 MYNGHTGRKL--------------EAQFFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQ 1095
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQR 284
PV R R GG+ FGEM+ DC+I+HGA+ L ERL ++ +AN+ +
Sbjct: 1096 PVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLYDQSDAYRVHVCDLCGMIAIANLRKN 1155
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
CR C + I + ++PY KLL QEL
Sbjct: 1156 TFE---CRSCRNKTQISQVHIPYACKLLFQEL 1184
>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
IPO323]
gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
Length = 1231
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 186/412 (45%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP--SDDML----NFGKIQSK---- 44
MNQ+S++ G+FRS Y+A +D + ++ +P SD M + K+
Sbjct: 846 MNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVESFEKPTRSDTMRMQHGTYDKLDEDGIIS 905
Query: 45 -----SG-DIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
SG DI+IGK A E+G D S L+ TE G+V +VLL++N +G
Sbjct: 906 PGARVSGTDILIGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENGVVDQVLLTTNTEG 965
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R V V +GDKF+S HGQKG +G E P
Sbjct: 966 LRF--VKVRTRVTKVPQ--IGDKFASRHGQKGTIGITYRQEDMPFSADGLTPDIIINPHA 1021
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF TE + +S++L G + G
Sbjct: 1022 IPSRMTIAHLIECLLSKVGALQGQEGDATPF--------TEVTVTSISEILKSNGFQQRG 1073
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1074 FEVMYNGHTGKKL--------------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1119
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CK--NVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C+ + I
Sbjct: 1120 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICELCGLMTPIAS 1179
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + I + +PY AKLL QEL+ +M + + T SGVS+
Sbjct: 1180 IKKQQFECRPCKNKTKIAQIIIPYAAKLLFQELA-AMNVATRMFTTRSGVSI 1230
>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1203
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 170/404 (42%), Gaps = 103/404 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD
Sbjct: 817 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAP 876
Query: 39 GKIQSKSGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 877 PGTRVSGDDVIIGKTTPISQDDAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLR 936
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R V +GDKFSS HGQKG +G E P
Sbjct: 937 FVKIRMRS----VRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTMEGITPDIIVNPHAIP 992
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 993 SRMTIGQLVECVMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1044
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1045 RMYNGHTGRIL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1090
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A +
Sbjct: 1091 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCQQCGLIAIANLKK 1150
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ +PY KLL QEL SM I + T+
Sbjct: 1151 ISFE-CRSCKNKTDIVQVYIPYACKLLIQEL-MSMAIAPRMLTK 1192
>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
Length = 1205
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 176/406 (43%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPSDDML------NFGKIQSK---- 44
MNQ+S++ G+FRS SY+ E VK RP + N+ K++
Sbjct: 822 MNQSSIDRGLFRSLFFRSYRDEEKKMGTLVKEDFGRPDREHTMGMRHGNYDKLEDDGFAP 881
Query: 45 -----SGD-IVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKN 85
SGD ++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 882 PGTRVSGDDVIIGKTTPISQDEAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLR 941
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R V +GDKFSS HGQKG +G E P
Sbjct: 942 FVKIRMRS----VRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIP 997
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I+ L NC G + G
Sbjct: 998 SRMTIGQLVECIMGKVAAHIGKEGDATPFTDVTVDSISRT-------LHNC-GYQMRGFE 1049
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1050 RMYNGHTGRVL--------------PAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1095
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN+ +
Sbjct: 1096 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGLMAIANLKK 1155
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + D ++ +PY KLL QEL SM I + T+
Sbjct: 1156 MSFE---CRSCRNKTDNVQVYIPYACKLLIQEL-MSMAIAPRMLTK 1197
>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
Length = 1278
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 182/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPSD-DMLNFGK------------- 40
MNQ+S++ G+FRS +++ D + +++ +P+ D L
Sbjct: 893 MNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEMFEKPTRGDTLRLKHGTYDKLDADGIIA 952
Query: 41 --IQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK + I D+ S L+ TE G+V V+L++N DG
Sbjct: 953 PGIRVSGEDIIIGKTSPINPDNAELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDG 1012
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF---LEQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G +E P
Sbjct: 1013 MRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHA 1068
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A GL ATPF T VS LL G ++ G
Sbjct: 1069 IPSRMTIAHLVECLLSKVATLKGLEGDATPFTDVT--------VDSVSDLLREQGYQSRG 1120
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ F T+YQ+ HM +DK+ R G Q +
Sbjct: 1121 FEILYHGHTGRKL--------------RAQCFFGPTYYQRLRHMVDDKIHARARGPVQIM 1166
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1167 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAYRVHICEICGLMTPIAN 1226
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SMGI + T SG+S+
Sbjct: 1227 LTKQSF---ECRPCKNKTKIAQVHMPYAAKLLFQEL-MSMGIASRMFTSRSGISV 1277
>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
Length = 1257
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 178/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-SDDMLNFGK------------- 40
MNQ+S++ G+FRS Y+ D + ++ +P D + K
Sbjct: 872 MNQSSIDRGLFRSMFYRTYTDTEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIA 931
Query: 41 --IQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 932 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDD 991
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 992 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHA 1047
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS+LL G ++ G
Sbjct: 1048 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVT--------VDSVSRLLREHGYQSRG 1099
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1100 FEVMYNGHTGRKMV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1145
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1146 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAK 1205
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR+CN+ I + ++PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1206 LKKGLFECRLCNNKHRISQVHIPYAAKLLFQELA-AMNIAARMFTNRSGVSV 1256
>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
Length = 1259
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 181/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS E ++ + +++K + DD +
Sbjct: 874 MNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVA 933
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + I D+ S L+ TE G+V +V++++N DG
Sbjct: 934 PGVRVSGEDIIIGKTSPISPDNAELGQRTTQHVKRDASTPLRSTENGIVDQVIVTTNQDG 993
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 994 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHA 1049
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF T VSQLL G ++ G
Sbjct: 1050 IPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVT--------VDSVSQLLRDQGYQSRG 1101
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1102 FEIMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1147
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1148 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIAN 1207
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SGVS+
Sbjct: 1208 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGVSI 1258
>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 1259
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 181/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS E ++ + +++K + DD +
Sbjct: 874 MNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVA 933
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + I D+ S L+ TE G+V V++++N DG
Sbjct: 934 PGVRVSGEDIIIGKTSPINPDNQELGQKTTQHVKRDASTPLRSTENGIVDSVIITTNQDG 993
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 994 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHA 1049
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF T VSQLL G ++ G
Sbjct: 1050 IPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVT--------VDSVSQLLRDQGYQSRG 1101
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1102 FEIMYQGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1147
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1148 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIAN 1207
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SGVS+
Sbjct: 1208 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGVSI 1258
>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
Length = 1287
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 178/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD--------------NKDIQVKSRPS----DDMLNFG--- 39
MNQ+S++ G+FRS +++ D D RP D + N G
Sbjct: 902 MNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIA 961
Query: 40 -KIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK + I D+ S L+ TE G+V V ++N DG
Sbjct: 962 PGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDG 1021
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1022 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHA 1077
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G+ ATPF T VS LL G ++ G
Sbjct: 1078 IPSRMTIAHLIECLLSKVGALKGMEGDATPFTDVT--------VDSVSNLLREHGYQSRG 1129
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1130 FEIMYHGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1175
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1176 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIAN 1235
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG+S+
Sbjct: 1236 LTKQSFE---CRPCKNKTKIAQVHMPYAAKLLFQEL-MSMNIASRLFTSRSGISV 1286
>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
2508]
gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
2509]
Length = 1287
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 178/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD--------------NKDIQVKSRPS----DDMLNFG--- 39
MNQ+S++ G+FRS +++ D D RP D + N G
Sbjct: 902 MNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIA 961
Query: 40 -KIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK + I D+ S L+ TE G+V V ++N DG
Sbjct: 962 PGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDG 1021
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1022 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHA 1077
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G+ ATPF T VS LL G ++ G
Sbjct: 1078 IPSRMTIAHLIECLLSKVGALKGMEGDATPFTDVT--------VDSVSNLLREHGYQSRG 1129
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1130 FEIMYHGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1175
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1176 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIAN 1235
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG+S+
Sbjct: 1236 LTKQSFE---CRPCKNKTKIAQVHMPYAAKLLFQEL-MSMNIASRLFTSRSGISV 1286
>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
higginsianum]
Length = 1258
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 181/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS E ++ + +++K + DD +
Sbjct: 873 MNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + I D+ S L+ TE G+V +V++++N DG
Sbjct: 933 PGVRVSGEDIIIGKTSPISPDNAELGQRTTQHVKRDASTPLRSTENGIVDQVIVTTNQDG 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF T VSQLL G ++ G
Sbjct: 1049 IPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVT--------VDSVSQLLRDQGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1101 FEIMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIAN 1206
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SGVS+
Sbjct: 1207 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGVSI 1257
>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae Y34]
gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae P131]
Length = 1276
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 184/415 (44%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------------------IQVKSRPSDDMLNFGKIQ 42
MNQ++++ G+FRS +++ D++ +++K D + + G +
Sbjct: 891 MNQSTIDRGLFRSLFFRSYTDSEKRVGINMVEKFEKPFRADTLRLKQGTYDKLEDDGIVA 950
Query: 43 SKS----GDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I AD+ S L+ TE G+V +V++++N DG
Sbjct: 951 PGTRVSGEDIIIGKTAPIPADNQELGQRTVQHTKRDASTPLRSTESGIVDQVIVTTNQDG 1010
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1011 LKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHA 1066
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G+ ATPF TE VS LL G ++ G
Sbjct: 1067 IPSRMTIAHLIECLLSKVATLKGMEGDATPF--------TEVTVDSVSNLLREHGYQSRG 1118
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G +
Sbjct: 1119 FEVLYHGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVNIM 1164
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------------KCKNVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL +A+
Sbjct: 1165 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRAHICGICGLMTPIAD 1224
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1225 LTRKTF---ECRPCRNKTKIAQVHIPYAAKLLFQELA-SMNIATRMFTERSGVSI 1275
>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
Length = 1266
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 181/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS ++A D++ ++ +P DD +
Sbjct: 881 MNQSSIDRGLFRSLFFRAYTDSEKRVGINFVETFEKPFRSDTLRLKHGTYDKLDDDGIVA 940
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + I DH S L+ TE G++ +V++++N D
Sbjct: 941 PGVRVSGEDIIIGKTSPINPDHQEMGQRTQAHVKRDASTPLRSTESGIIDQVVVTTNQDN 1000
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1001 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRSEDMPFTTEGILPDIIINPHA 1056
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G+ ATPF T VS LL G ++ G
Sbjct: 1057 IPSRMTIAHLIECLLSKVATLKGMEGDATPFTDVT--------VDSVSGLLREHGYQSRG 1108
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1109 FEIMYHGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1154
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1155 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAYRVHICEICGLMTPIAN 1214
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + +PY AKLL QEL+ +M I + T SGVS+
Sbjct: 1215 LTKQSFE---CRPCKNKTRIAQVQIPYAAKLLFQELA-AMNIAARMFTDRSGVSI 1265
>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
Length = 1258
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVS 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------------KCKNVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL + I +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
V G + CR C + + I + ++PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1207 VKKGDFECRACRNKNKISQVHIPYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
112818]
Length = 1258
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVS 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGITPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------------KCKNVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL + I +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
V G + CR C + + I + ++PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1207 VKKGDFECRACRNKNKISQVHIPYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
127.97]
Length = 1258
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVS 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGITPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------------KCKNVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL + I +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
V G + CR C + + I + ++PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1207 VKKGDFECRACRNKNKISQVHIPYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1258
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVS 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------------KCKNVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL + I +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
V G + CR C + + I + ++PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1207 VKKGDFECRACRNKNKISQVHIPYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
118892]
gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
118892]
Length = 1258
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 180/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVS 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + I +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
V G + CR C + + I + ++PY AKLL QEL+ SM I + T+ SGVS+
Sbjct: 1207 VKKGDFECRACRNRNKISQVHIPYAAKLLFQELA-SMNIAARMYTKRSGVSI 1257
>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
Length = 1218
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 173/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP+ DD L
Sbjct: 832 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAP 891
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + I D HS L+H+E G+V +VLL++N DG
Sbjct: 892 PGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLR 951
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 952 FVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIP 1007
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ + G
Sbjct: 1008 SRMTIGQLIECIMGKVAAQMGREGDATPFTDVTVDNI--------SKALHRCNYQMRGFE 1059
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1060 TMYNGHTGRKL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1105
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL KC +A I +
Sbjct: 1106 QPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA--IANL 1163
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + T
Sbjct: 1164 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTH 1207
>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
Length = 1222
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 177/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 839 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPHRTNTLRMKHGTYDKLDDDGLIA 898
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 899 PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDG 958
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 959 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTADGIVPDLIINPHA 1014
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G + G
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYHSRG 1066
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1067 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1112
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN--VANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C N + +VI +
Sbjct: 1113 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGNCGLMSVIAK 1172
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ CN+ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1173 LSHNQFECKGCNNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLFTDRS 1219
>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
Length = 1224
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 179/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 901 PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN--VANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C N + +VI +
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGNCGLMSVIAK 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T+ S
Sbjct: 1175 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTERS 1221
>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis RS]
Length = 1258
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 177/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S++++
Sbjct: 933 PGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNED 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQIFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAK 1206
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + + I + ++PY AKLL QEL SM I + T+ SGV++
Sbjct: 1207 LKKGDFECRACKNKNKISQVHIPYAAKLLFQEL-MSMNIAARMYTKRSGVTL 1257
>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1258
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 177/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S++++
Sbjct: 933 PGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNED 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQIFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + + +
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRIHICDICGLMTPIAK 1206
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
G CR C + + I + ++PY AKLL QEL SM I + T+ SGV++
Sbjct: 1207 LKKGDFECRACKNKNKISQVHIPYAAKLLFQEL-MSMNIAARMYTKRSGVTL 1257
>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1198
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 180/412 (43%), Gaps = 109/412 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------------------IQVKSRPSDDMLNFGKIQ 42
MNQ++++ G+FRS Y++ +D + +++K D + N G I
Sbjct: 813 MNQSAIDRGLFRSIFYRSYMDTEKKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIA 872
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I D S LK TE G+V +VL+++N DG
Sbjct: 873 PGTAVTGDDIIIGKTAPIPPDSEELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADG 932
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 933 LKFSKVRMRST----RIPQIGDKFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHA 988
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF TE +S +L+ G + G
Sbjct: 989 IPSRMTIGHLVECLLSKVATLQGSEGDATPF--------TEVTVESISSILHEKGYQKRG 1040
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1041 LEVMYNGHTGRKL--------------QAQVYIGPTYYQRLKHMVDDKIHARARGPVQIL 1086
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+IAHG + L ERL +AN+
Sbjct: 1087 TRQPVEGRSRDGGLRFGEMERDCMIAHGVAAFLKERLFDASDAYRLHVCDLCGMTAIANL 1146
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGV 333
++ CR C + DI + +VPY AKLL QEL SMGI+ + + +S
Sbjct: 1147 KKQTFE---CRACRNKTDISQIHVPYAAKLLFQELQ-SMGISPRLYSDVSNT 1194
>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1198
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 167/403 (41%), Gaps = 105/403 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS-------------------RPSDDMLNF 38
MNQ+S++ G FRS SY+ E VK + DD
Sbjct: 812 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLEDDGFAP 871
Query: 39 GKIQSKSGDIVIGKYAEIGAD-----------HSIKLKHTERGLVLKVLLSSNDDGKNFA 87
+ D++IGK D HS L+H+E G+V +VLL++N DG F
Sbjct: 872 PGTRVSGDDVIIGKTTPFTPDENQNIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFV 931
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------E 121
V IR V +GDKFSS HGQKG +G
Sbjct: 932 KVRIRS----VRIPQIGDKFSSRHGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIPSR 987
Query: 122 QTPAQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI 180
T QL+E +GK A G ATPF T I S+ L+ G + G +
Sbjct: 988 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFETM 1039
Query: 181 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 240
+ + L S+IF T+YQ+ HM +DK+ R G Q LT +P
Sbjct: 1040 YNGHTGRPL--------------TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1085
Query: 241 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC--KNVANVIQRV 285
R R GG+ FGEM+ DC+IAHGA+ L ERL +C +AN+ +
Sbjct: 1086 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLMGIANLKKHS 1145
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
CR C + DI++ +PY KLL QEL SM I + T
Sbjct: 1146 YE---CRSCKNKTDIVQIYIPYACKLLIQEL-MSMAIAPRLLT 1184
>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
Length = 1222
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 177/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 839 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 898
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 899 PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDG 958
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 959 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHA 1014
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1066
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1067 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1112
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A +VI +
Sbjct: 1113 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAK 1172
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + N+PY AKLL QEL +M IT + T S
Sbjct: 1173 LNHNQFECKGCDNKIDIYQINIPYAAKLLFQEL-MAMNITPRLYTDRS 1219
>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS 8797]
Length = 1220
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 176/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 837 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 896
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G++ +VL+++N DG
Sbjct: 897 PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLVTTNQDG 956
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 957 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYSREDMPFTAEGIVPDLIINPHA 1012
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G + G
Sbjct: 1013 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYHSRG 1064
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1065 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1110
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN--VANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C N + +VI +
Sbjct: 1111 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDSFRVHICGNCGLMSVIAK 1170
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ CN+ DI + +PY AKLL QEL +M IT + T S
Sbjct: 1171 LSHNQFECKGCNNKIDIYQIRIPYAAKLLFQEL-MAMNITPRLYTDRS 1217
>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
CIRAD86]
Length = 1248
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 182/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------------------IQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS ++A +D + +++K D + G I
Sbjct: 863 MNQSSIDRGLFRSLFFRAYMDQEKRVGMSVVEQFEKPVRADTMRMKQGTYDKLDEDGIIS 922
Query: 43 SKS----GDIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
S D++IGK A E+G D S L+ TE G+V +VLL++N +G
Sbjct: 923 PGSRVSGDDVIIGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEG 982
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R V V +GDKF+S HGQKG +G E P
Sbjct: 983 LRF--VKVRTRVTKVPQ--IGDKFASRHGQKGTIGITYRQEDMPFTADGLTPDIIINPHA 1038
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF T + +SQ+L G + G
Sbjct: 1039 IPSRMTIAHLIECLLSKVGALQGQEGDATPFTDVT--------VTSISQILADHGFQQRG 1090
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1091 FEVMYNGHTGKKL--------------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1136
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CK--NVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C+ + I
Sbjct: 1137 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIAS 1196
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + I + +PY AKLL QEL+ +M + + T SG+S+
Sbjct: 1197 IKKQQFECRPCRNKTKIAQVIIPYAAKLLFQELA-AMNVATRMFTDRSGISI 1247
>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
Length = 1224
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 177/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V ++L+++N DG
Sbjct: 901 PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQILITTNQDG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRVRTT----KIPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------SQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A +V+ +
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAK 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1175 LNHNQFECRGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1274
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 178/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD--------------NKDIQVKSRPS----DDMLNFG--- 39
MNQ+S++ G+FRS +++ D D RP D + N G
Sbjct: 889 MNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIA 948
Query: 40 -KIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK + I D+ S L+ TE G+V V ++N DG
Sbjct: 949 PGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDG 1008
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1009 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHA 1064
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ G+ ATPF T VS LL G ++ G
Sbjct: 1065 IPSRMTIAHLIECLLSKVGSLKGMEGDATPFTDVT--------VDSVSNLLREHGYQSRG 1116
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1117 FEIMYHGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1162
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1163 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIAN 1222
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG+++
Sbjct: 1223 LTKQSFE---CRPCKNKTKIAQVHMPYAAKLLFQEL-MSMNIASRMFTSRSGITV 1273
>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1241
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 179/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D + ++ +P+ DD L
Sbjct: 858 MNQSSIDRGLFRSLFFRSYMDQEKRVGMTVVEQFEKPNRSNTLRLKHGTYEKLDDDGLIA 917
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I AD S L+ TE G+V +VL+++N +G
Sbjct: 918 PGVRVSGEDIIIGKTTPIQADSEELGQRTVYHSKRDASTPLRSTENGIVDQVLITTNQEG 977
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 978 LKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTREGIVPDLIINPHA 1033
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A GL A+PF T I S+LL G ++ G
Sbjct: 1034 IPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTVDAI--------SKLLREHGYQSRG 1085
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1086 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPVQIL 1131
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ + ERL + A +VI +
Sbjct: 1132 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFMKERLMEASDAFRVHVCGVCGLMSVIAK 1191
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C + DI + ++PY AKLL QEL +M I + T S
Sbjct: 1192 LKHNQFECRGCKNKIDIYQIHIPYAAKLLFQEL-MAMNIAPRLYTDRS 1238
>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
Length = 1227
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 178/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 844 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 903
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 904 PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDG 963
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 964 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 1019
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1020 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISRLLREHGYQSRG 1071
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1072 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1117
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN--VANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C N + +VI +
Sbjct: 1118 TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHVCGNCGLMSVIAK 1177
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1178 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1224
>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
Length = 1282
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 184/415 (44%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRS---ESY-------------KAEVDNKDIQVKSRPSD-DMLNFGKIQS 43
MNQ+S++ G+FRS SY K E N+ ++ + S D L+ I +
Sbjct: 897 MNQSSIDRGLFRSLFFRSYTDCEKRVGINIIEKFEKPNRSDTLRLKHSTYDKLDMDGIVA 956
Query: 44 K----SG-DIVIGKY-------AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
SG DI+IGK AE+G D S L+ TE G+V V+L++N DG
Sbjct: 957 PGVRVSGEDIIIGKTCPINPENAELGQRSTQHVKRDASTPLRSTESGIVDSVILTTNQDG 1016
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1017 MRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTFRQEDMPFTCEGITPDIIINPHA 1072
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF TE VS LL G ++ G
Sbjct: 1073 IPSRMTIAHLIECLLSKVSTLKGMEGDATPF--------TEVTVDSVSALLREHGYQSRG 1124
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1125 FEIMYHGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIM 1170
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1171 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIAN 1230
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG+S+
Sbjct: 1231 LTKQSF---ECRPCKNKTKIAQVHIPYAAKLLFQEL-MSMNIASRMFTSRSGISV 1281
>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1203
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 170/406 (41%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD
Sbjct: 817 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAP 876
Query: 39 GKIQSKSGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 877 PGTRVSGDDVIIGKTTPISQDDAQGQPARYTQKDHSTSLRHSETGIVDQVLLTTNADGLR 936
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R V +GDKFSS HGQKG +G E P
Sbjct: 937 FVKIRMRS----VRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWNIEGITPDIIVNPHAIP 992
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 993 SRMTIGQLVECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHRCGYQMRGFE 1044
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1045 RMYNGHTGRVL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1090
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN+ +
Sbjct: 1091 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGLIAIANLKK 1150
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + D ++ +PY KLL QEL SM I + T+
Sbjct: 1151 MSFE---CRSCRNKTDNVQVYIPYACKLLIQEL-MSMAIAPRMLTK 1192
>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1286
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 182/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS +++ D + +++K D + G +
Sbjct: 901 MNQSSIDRGLFRSLFFRSYTDCEKRVGINIVEMFEKPNRTETLRMKHSTYDKLDADGIVA 960
Query: 43 SKS----GDIVIGKY-------AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK AE+G+ D S L+ TE G+V V+L++N DG
Sbjct: 961 PGTRVSGDDIIIGKTCPINPENAELGSRTAQHVKRDVSTALRSTENGIVDSVILTTNQDG 1020
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1021 MRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTCEGITPDIIINPHA 1076
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF TE VS LL G ++ G
Sbjct: 1077 IPSRMTIAHLIECLLSKVSTLKGMEGDATPF--------TEVTVDSVSALLREHGYQSRG 1128
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1129 FEIMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIM 1174
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1175 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIAN 1234
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL +M I + T SG+S+
Sbjct: 1235 LTKQSFE---CRPCKNKTKIAQVHIPYAAKLLFQEL-MAMNIAARMFTTRSGISV 1285
>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
[Meyerozyma guilliermondii]
Length = 1219
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 170/392 (43%), Gaps = 103/392 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS ++ +D K ++ +PS DD L
Sbjct: 850 MNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 909
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 910 PGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 969
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 970 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHA 1025
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+P T VS+LL G ++ G
Sbjct: 1026 IPSRMTVAHLIECLLSKVSSLSGLEGDASPLTDVTAEA--------VSKLLREHGYQSRG 1077
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1078 FEVMYHGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1123
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1124 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIAN 1183
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQE 315
+ + CR C + +I + ++PY AKLL QE
Sbjct: 1184 LKKNQFECRSCKNKTNIYQVHIPYAAKLLFQE 1215
>gi|115454339|ref|NP_001050770.1| Os03g0646800 [Oryza sativa Japonica Group]
gi|113549241|dbj|BAF12684.1| Os03g0646800, partial [Oryza sativa Japonica Group]
Length = 368
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 155/352 (44%), Gaps = 85/352 (24%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSS 79
DD L + D++IGK + I D HS L+H+E G+V +VLL++
Sbjct: 36 DDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTT 95
Query: 80 NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------ 124
N DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 96 NADGLRFVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIV 151
Query: 125 -----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA 172
QL+E +GK A G ATPF T +S+ L+ G
Sbjct: 152 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGY 203
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
+ G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 204 QMRGFETMYNGHTGRKLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRGP 249
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK--N 277
Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL KC
Sbjct: 250 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 309
Query: 278 VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+AN+ + CR C + DI++ ++PY KLL QEL +M I + TQ
Sbjct: 310 IANLKKNSF---ECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTQ 357
>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
Length = 1175
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 170/375 (45%), Gaps = 71/375 (18%)
Query: 1 MNQASLECGVFRS---ESYKAEVD-------------NKDIQVKSRP------SDDMLNF 38
MNQ+S++ G+FRS SYK E N++I +R DD +
Sbjct: 801 MNQSSIDRGIFRSIFFRSYKTEEKKQGSLVQESIERPNREITAGTRHGTYDKLDDDGIAP 860
Query: 39 GKIQSKSGDIVIGKYAEIG------------ADHSIKLKHTERGLVLKVLLSSNDDGKNF 86
+ DIVIGK + I D S L+H+E G++ VL+++ DG+ F
Sbjct: 861 PGTRVSGDDIVIGKTSPIPDDGSGLPQRYSKKDASTALRHSESGMIDSVLVTTGADGQRF 920
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATP 146
++ V V +GDKF+S HGQKG +G + T + +A G + +A P
Sbjct: 921 ----VKMRVRSVRIPQVGDKFASRHGQKGTIG-ITYTQEDMPFSAEGISPDLIINPHAIP 975
Query: 147 FATSTGGVITEQHQSFVSQLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL-- 202
+ G ++ ++ +S++ C+G F + L C + +
Sbjct: 976 SRMTIGHLV----EALMSKVAACMGKEGDATPFTSVTVDNISAALHRCGYQSRGWEVMYN 1031
Query: 203 ------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 256
+++ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+
Sbjct: 1032 GHTGRQLQAQIFLNPTYYQRLKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEME 1091
Query: 257 CDCLIAHGASGNLHERLKCKN---------------VANVIQRVVGGPYCRICNSADDII 301
DC+I+HGA+ L ERL ++ VAN+ + YC C + I+
Sbjct: 1092 RDCIISHGAAAFLKERLYDQSDAYRVHVCSVCGLIAVANLKKNQF---YCTACKNTTGIV 1148
Query: 302 KANVPYGAKLLSQEL 316
+ +PY KLL QEL
Sbjct: 1149 QVFIPYACKLLFQEL 1163
>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
42464]
gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
42464]
Length = 1276
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 182/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFG--- 39
MNQ+S++ G+FRS +++ D + +++K D + G
Sbjct: 891 MNQSSIDRGLFRSLFFRSYTDCEKRVGINIVEKFEKPNRSDTLRLKHSTYDKLDADGIVA 950
Query: 40 -KIQSKSGDIVIGKY-------AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK AE+G D S L+ TE G+V +V++++N DG
Sbjct: 951 PGVRVSGEDIIIGKTCPINPDNAELGQRSAQHVKRDASTPLRSTESGIVDQVVVTTNQDG 1010
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1011 MRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTCEGITPDLIINPHA 1066
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF TE VS LL G ++ G
Sbjct: 1067 IPSRMTIAHLIECLLSKVSTLKGMEGDATPF--------TEVTVDSVSDLLREHGYQSRG 1118
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1119 FEVLYHGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIM 1164
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1165 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIAN 1224
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG+S+
Sbjct: 1225 LTKQSF---ECRPCKNKTKIAQVHMPYAAKLLFQEL-MSMNIAARMFTSRSGISV 1275
>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
Length = 1224
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 175/408 (42%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLIS 900
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 901 PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A VI +
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHVCGICGLMTVIAK 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + +PY AKLL QEL +M IT + T S
Sbjct: 1175 LNHNQFECKGCDNKIDIYQIRIPYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|120407526|gb|AAY82000.2| RNA polymerase II second largest subunit [Coleochaete scutata]
Length = 702
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 176/387 (45%), Gaps = 70/387 (18%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ---VKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY++ D + Q VK +PS DD +
Sbjct: 292 MNQSSIDRGFFRSISYRSYRDEEKKQGSLVKEEFEKPSRETVMGMRHGSYDKLDDDGIAP 351
Query: 39 GKIQSKSGDIVIGKYAEIG------------ADHSIKLKHTERGLVLKVLLSSNDDGKNF 86
+ + D++IGK + D S LKH+E G+V +VLL++ND G F
Sbjct: 352 PGTRVSAEDVIIGKTTPLPDDGNEAARRFTKRDQSTSLKHSESGMVDQVLLTTNDQGLRF 411
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYA 144
+ +R V +GDKF+S HGQKG +G T Q +G ++ +A
Sbjct: 412 VKMRVRS----VRIPQIGDKFASRHGQKGTVGI---TYTQEDMPFTQEGIVPDIIVNPHA 464
Query: 145 TPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL 202
P + G +I + + ++ IG F + L +C F +
Sbjct: 465 IPSRMTIGHLI----ECLLGKVATHIGREGDATPFTDVTVDNISKALHKCGYQMRGFETM 520
Query: 203 --------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 254
+++ IF T+YQ+ HM +DK+ R G Q LT +P R + GG+ FGE
Sbjct: 521 YNGHTGRKLQAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPAEGRAKDGGLRFGE 580
Query: 255 MKCDCLIAHGASGNLHERLKCKNVAN-----------VIQRVVGGPY-CRICNSADDIIK 302
M+ DC+IAHGA+ + ERL ++ A I + G + CR C + DI++
Sbjct: 581 MERDCMIAHGAAHFMKERLFDQSDAYRVHVCEICGLIAIANLKKGTFECRGCKNKTDIVQ 640
Query: 303 ANVPYGAKLLSQELSFSMGITLKFDTQ 329
++PY KLL QEL +M I + T+
Sbjct: 641 VHIPYACKLLFQEL-MAMAIAPRMFTR 666
>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida tropicalis]
Length = 1020
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 171/393 (43%), Gaps = 103/393 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +PS +D L
Sbjct: 651 MNQSSIDRGLFRSLFFRSYMDLEKRQGMKLLETFEKPSRSDTLRLKHGTYEKLDEDGLIA 710
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK I AD S L+ TE G+V +VLL++N DG
Sbjct: 711 PGIRVSGEDIIIGKTTPIPADTEELGQRTLHHSKRDASTPLRSTESGIVDQVLLTTNGDG 770
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 771 SKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHA 826
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G A+PF T I ++LL G ++ G
Sbjct: 827 IPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTAEAI--------AKLLREHGYQSRG 878
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 879 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 924
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 925 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIAN 984
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQEL 316
+ + CR C + +I + ++PY AKLL QE
Sbjct: 985 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEF 1017
>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
Length = 1224
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 176/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 901 PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A VI +
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAK 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1175 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1224
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 176/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 901 PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A VI +
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAK 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1175 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|328769515|gb|EGF79559.1| RNA polymerase II second largest subunit precursor [Batrachochytrium
dendrobatidis JAM81]
Length = 1312
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 174/405 (42%), Gaps = 109/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNK------DIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+ +D + + +PS DD L
Sbjct: 935 MNQSSIDRGLFRSLYYRVYMDQEKKVGMISTETLEKPSRDTTLRLKHGTYEKLEDDGLIA 994
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I AD S LK TE G+V +VL+++N DG
Sbjct: 995 PGVRVSGEDIIIGKTVPIAADSTELGQRTTMHTKRDASTPLKSTENGIVDQVLITTNQDG 1054
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQT-------------------- 123
F V +R S+ + H +GDKF+S HGQKG +G +T
Sbjct: 1055 FKFVKVRVR-SIRIPH---MGDKFASRHGQKGTVGITYRTEDMPFTADGITPDLIINPHA 1110
Query: 124 -PAQ-----LLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
P++ L+E L K + G ATPF T I SQ L G + G
Sbjct: 1111 IPSRMTIGHLVECLLSKVSTFTGDEGDATPFTDVTVEAI--------SQALQGYGYQRRG 1162
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + ++T T+YQ+ HM +DK+ R G Q L
Sbjct: 1163 FEVLYNGHTGRKL--------------NAQVYTGPTYYQRLKHMVDDKIHSRARGPLQIL 1208
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANV 281
T +PV R R GG+ FGEM+ DC+I+HGA+ L ERL C + VAN+
Sbjct: 1209 TRQPVEGRSRDGGLRFGEMERDCMISHGAANFLKERLFDASDAYRVHVCDHCGLMAVANL 1268
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ CR C + I + +PY KLL QEL +M I +
Sbjct: 1269 KKNSFE---CRSCRNKTQISQVYLPYACKLLFQEL-MAMNIAPRL 1309
>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
Length = 1223
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 177/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P +D L
Sbjct: 840 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIA 899
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 900 PGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDG 959
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 960 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 1015
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1016 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1067
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1068 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1113
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A +VI +
Sbjct: 1114 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAK 1173
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1174 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1220
>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
Length = 1236
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 174/408 (42%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 853 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLKMKHGSYDKLDDDGLIS 912
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G++ +VL+++N DG
Sbjct: 913 PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLITTNQDG 972
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 973 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHA 1028
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G + G
Sbjct: 1029 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYHSRG 1080
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1081 FEIMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1126
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A VI +
Sbjct: 1127 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVIAK 1186
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + +PY AKLL QEL +M IT + T S
Sbjct: 1187 LNHNQFECKGCDNKIDIYQIKIPYAAKLLFQEL-MAMNITPRLYTDRS 1233
>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum NZE10]
Length = 1260
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 179/412 (43%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS E+++ V +++K D + G I
Sbjct: 875 MNQSSIDRGLFRSLFFRSYTDQEKRVGMSVVEAFEKPVRADTMRMKKGTYDKLDEDGIIT 934
Query: 43 SKS----GDIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
S DI+IGK A E+G D S L+ TE G++ +VL+++N +G
Sbjct: 935 PGSRVSGEDILIGKTAPMPPDAEELGQRTTAHTKRDVSTPLRSTENGVIDQVLVTTNTEG 994
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R V V +GDKF+S HGQKG +G E P
Sbjct: 995 LRF--VKVRTRVTKVPQ--IGDKFASRHGQKGTVGITYRQEDMPFTADGLTPDIIINPHA 1050
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA +G ATPF T + VS++L G + G
Sbjct: 1051 IPSRMTIAHLIECLLSKVGALNGQEGDATPFTDVT--------VTSVSEILASHGFQQRG 1102
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1103 FEVMYNGHTGRKL--------------NAQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1148
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK-------------CKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + +
Sbjct: 1149 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLLDVSDAFRVHVCEICGLMTPIAS 1208
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
CR C + I + +PY AKLL QEL+ +M + + T SG+S+
Sbjct: 1209 LKKQQFECRPCKNKTRIAQIIIPYAAKLLFQELA-AMNVATRMFTTRSGISI 1259
>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1185
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 174/406 (42%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E + +K RP+ DD L
Sbjct: 796 MNQSSIDRGFFRSIFYRSYRDEEKKQGTLIKEEFERPNRENTTGMRHGSYDKLDDDGLAP 855
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + D S L+H+E G++ +VLL++N DG
Sbjct: 856 PGTRVSGEDVIIGKTTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLR 915
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R + +GDKFSS HGQKG +G E P
Sbjct: 916 FVKIRVRS----IRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIP 971
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 972 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1023
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L + IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1024 VMYNGHTGRRL--------------TAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1069
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL C++ +AN+ +
Sbjct: 1070 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGIIAIANLKK 1129
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ ++PY KLL QEL SM I + T+
Sbjct: 1130 NTYE---CRGCKNNTDIVQVHIPYACKLLFQEL-MSMAIAPRMFTK 1171
>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; AltName: Full=B150; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide
gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With Substrate
Analogue Gmpcpp
gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
Scaffold
gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
With The Inhibitor Alpha-Amanitin
gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
Mismatch And A Frayed Rna 3'-Uridine
gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
Mismatch And A Frayed Rna 3'-Guanine
gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
D
gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
E
gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1224
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 176/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 901 PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRVRTT----KIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A VI +
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAK 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1175 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
Length = 1223
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 174/403 (43%), Gaps = 104/403 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 840 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLIA 899
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 900 PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDG 959
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 960 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHA 1015
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1016 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1067
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1068 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1113
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A VI +
Sbjct: 1114 TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAK 1173
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ + C+ C++ DI + ++PY AKLL QEL +M IT +
Sbjct: 1174 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRL 1215
>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
Length = 1224
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 176/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 901 PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRVRTT----KIPQIGDKFASRHGQKGTIGITYRREDMPFTRRRYVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A VI +
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAK 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1175 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1221
>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
reilianum SRZ2]
Length = 1242
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 178/405 (43%), Gaps = 109/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEV-DNKDIQVK-----SRPSDDML------NFGKIQSK---- 44
MNQ+S++ G+FRS Y+ V + K + V +P+ D + KI +
Sbjct: 867 MNQSSIDRGLFRSMYYRGYVAEEKKVGVMQLEEFEKPNRDTTIRMKHGTYDKIDADGFCA 926
Query: 45 -----SGD-IVIGKYA-------EIG--------ADHSIKLKHTERGLVLKVLLSSNDDG 83
SGD ++IGK A E+G D SI LK TE G++ +VLL++N G
Sbjct: 927 PGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHG 986
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + GDKF+S HGQKG +G E P
Sbjct: 987 NKFVKVRVRNT----RVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHA 1042
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF TE VS +L +G ++ G
Sbjct: 1043 IPSRMTIGHLVECLLSKVAALSGQEGDATPF--------TELTVEAVSSILRGLGYQSRG 1094
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1095 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1140
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+IAHG +G L ER+ +AN+
Sbjct: 1141 TRQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKERMFDVSDPYRIHVCDLCGLTALANL 1200
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ G CR C + I + ++PY AKLL QEL S+ + L+
Sbjct: 1201 KK---GTYECRSCRNRTAISQIHIPYAAKLLMQEL-MSVNVALRL 1241
>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
Length = 1029
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 184/408 (45%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPS-DDML-----NFGKIQSK---- 44
MNQ+S++ G+FRS Y+ D++ ++ +P+ D L + KI
Sbjct: 648 MNQSSIDRGLFRSLFYRTYQDSEKSVGHSVVEQFEKPTRSDTLRLKHGTYDKIDEDGIVA 707
Query: 45 -----SG-DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
SG DI++GK A + D S L+ TE G+V +V+L++ +G
Sbjct: 708 PGVRVSGEDIIMGKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEG 767
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
FA V +R + +GDKF+S HGQKG +G E P
Sbjct: 768 HRFAKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHA 823
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T +T+ VS+LL +G ++ G
Sbjct: 824 IPSRMTIAHLIECQLSKVATLRGDEGDATPFTKVT---VTQ-----VSELLRTMGYQSRG 875
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 876 FEVMYNGHTGRKMV--------------AQVFLGPTYYQRLRHMVDDKIHSRARGPTQIL 921
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + VI +
Sbjct: 922 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHVCDICGLMTVIAK 981
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ CN+ + I + +PY AKLL QEL ++M I + T+ S
Sbjct: 982 LKKNTFECKNCNNKNKISQIYLPYAAKLLFQEL-WAMNIAARLYTKRS 1028
>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
206040]
Length = 1261
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 179/415 (43%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P +D +
Sbjct: 876 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I A D S L+ TE G+V +V+++ N D
Sbjct: 936 PGVRVSGEDIIIGKTAPIDAETQDLGTRTTMHQRRDISTPLRSTENGIVDQVIVTVNADN 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 996 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGLTPDIIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1052 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1104 FEIMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1210 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMYTNRSGASV 1260
>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium anisopliae
ARSEF 23]
Length = 1262
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 177/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P DD +
Sbjct: 877 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVA 936
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V V+L+ N D
Sbjct: 937 PGVRVSGEDIIIGKTAPIDQESQDLGTRTSVHQRRDISTPLRSTENGIVDSVILTVNADN 996
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 997 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHA 1052
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1053 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1104
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1105 FEIMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1150
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1151 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIAN 1210
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1211 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1261
>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
Length = 1210
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 171/389 (43%), Gaps = 103/389 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS +++ +D K ++ +P+ +D L
Sbjct: 848 MNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIA 907
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I AD S L+ TE G+V +VLL++N DG
Sbjct: 908 PGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 967
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 968 SKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHA 1023
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G A+PF V TEQ +S LL G ++ G
Sbjct: 1024 IPSRMTVAHLIECLLSKVSSLSGFEGDASPFT----DVTTEQ----ISTLLRDHGYQSRG 1075
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1076 FEVMYNGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1121
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1122 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIAN 1181
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLL 312
+ + CR C + +I + ++PY AKLL
Sbjct: 1182 LKKNQFECRSCKNKTNIYQIHIPYAAKLL 1210
>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
CQMa 102]
Length = 1263
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 177/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P DD +
Sbjct: 878 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVA 937
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V V+L+ N D
Sbjct: 938 PGVRVSGEDIIIGKTAPIDQESQDLGTRTSVHQRRDISTPLRSTENGIVDSVILTVNADN 997
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 998 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHA 1053
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1054 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1105
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1106 FEIMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1151
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1152 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIAN 1211
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1212 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1262
>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
Length = 1327
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 174/406 (42%), Gaps = 111/406 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD----IQVKS--RPS-----------------DDMLN 37
MNQ++++ G+FRS Y+ +D + +Q++S +PS D +
Sbjct: 905 MNQSAIDRGLFRSFYYRTYMDTEKRQGALQMESFEKPSRLDTLRLKRGTYDKLGDDGFVR 964
Query: 38 FGKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDD 82
G+ Q + GDI+IGK A I D S LK TE G + +V++++N D
Sbjct: 965 VGE-QVRGGDIIIGKTAPIAPDSEELGQRTKDHVKRDVSTPLKSTEEGYIDRVMITTNAD 1023
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-------------------- 122
G FA V +R + GDKF+S HGQKG +G Q
Sbjct: 1024 GLKFAKVRVRST----RIPQTGDKFASRHGQKGTIGITYQQNDMPFTSEGIVPDLIINPH 1079
Query: 123 ------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
T L+E L K A G ATPF+ T VS +L G ++
Sbjct: 1080 AIPSRMTIGHLVECLLSKVSALTGQEGDATPFSDVT--------VDSVSSVLKAQGFQDR 1131
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G+ + + L + ++ T+YQ+ HM +DK+ R G Q
Sbjct: 1132 GLEIMSNGHTGRKLA--------------AQVYLGPTYYQRLKHMVDDKIHSRARGPVQI 1177
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVAN 280
LT +PV R R GG+ FGEM+ DC+IAHG +G L ER+ +AN
Sbjct: 1178 LTRQPVEGRSRDGGLRFGEMERDCMIAHGVAGFLKERMFEASDAFRIHVCDICGMTAIAN 1237
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
++++ CR C + I + VPY AKLL EL +M I +
Sbjct: 1238 LMKQTF---ECRACKNKTAISQVLVPYSAKLLFSELQ-AMNIATRI 1279
>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
Length = 1210
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 171/405 (42%), Gaps = 103/405 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+ +D + ++ RP+ DD L
Sbjct: 830 MNQSSIDRGLFRSIFYRTYMDQEKKIGMTVMEEFERPTRSTTLRMKHGTYDKLEDDGLIA 889
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A + DH S L+ TE G+V +V++++N +G
Sbjct: 890 PGTRVSGDDIIIGKTAPVPPDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEG 949
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 950 LKFVKVRMRST----RIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHA 1005
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A GL ATPF TE VS+LL G + G
Sbjct: 1006 IPSRMTVAHLVECQLSKVSALSGLEGDATPF--------TEVTVEAVSKLLRSHGFHSRG 1057
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ H+ +DK+ R G Q L
Sbjct: 1058 FEVMYHGHTGRKLV--------------AQVFLGPTYYQRLKHLVDDKIHARARGPVQIL 1103
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANVIQRVVGGPY----- 290
T +PV R R GG+ FGEM+ DC I+HG S L ERL C + VI + G
Sbjct: 1104 TRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDLCGLIAIASF 1163
Query: 291 ------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + + +PY AKLL QEL SM I + T+
Sbjct: 1164 KKNSYECRSCQNRTRFSQIYLPYAAKLLFQEL-MSMNIAPRLFTK 1207
>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei QM6a]
Length = 1262
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 178/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P +D +
Sbjct: 877 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVA 936
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V V+++ N D
Sbjct: 937 PGVRVSGEDIIIGKTAPIDADTQDLGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADN 996
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 997 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHA 1052
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1053 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1104
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1105 FEIMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1150
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1151 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIAN 1210
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1211 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTDRSGASV 1261
>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
hordei]
Length = 1241
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 177/405 (43%), Gaps = 109/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEV-DNKDIQVK-----SRPSDDML------NFGKIQSK---- 44
MNQ+S++ G+FRS Y+ + + K + V +P D + KI +
Sbjct: 866 MNQSSIDRGLFRSLYYRGYMAEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLCA 925
Query: 45 -----SGD-IVIGKYA-------EIG--------ADHSIKLKHTERGLVLKVLLSSNDDG 83
SGD ++IGK A E+G D SI LK TE G++ +VLL++N G
Sbjct: 926 PGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHG 985
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R S GDKF+S HGQKG +G E P
Sbjct: 986 NKFVKVRVRNS----RVPQTGDKFASRHGQKGTIGITYRQEDMPFSTEGVTPDIIINPHA 1041
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF TE VS +L +G ++ G
Sbjct: 1042 IPSRMTIGHLVECLLSKVAALSGQEGDATPF--------TELTVEAVSSILRGLGYQSRG 1093
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1094 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1139
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+IAHG +G L ER+ +AN+
Sbjct: 1140 TRQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKERMFDASDPYRIHVCDLCGLTALANL 1199
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ G CR C + I + ++PY AKLL QEL S+ + L+
Sbjct: 1200 KK---GTYECRSCRNRTAISQIHIPYAAKLLMQEL-MSVNVALRL 1240
>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
20631-21]
Length = 1272
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 176/412 (42%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+A D + ++ +P DD +
Sbjct: 887 MNQSSIDRGLFRSLFYRAYHDQEKRIGMNVVEQFEKPFRSDTLKLKHGTYDKLDDDGIVA 946
Query: 39 GKIQSKSGDIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A E+G D S L+ TE G+V +VL+++N +G
Sbjct: 947 PGVRISGEDIIIGKTAPLPPDAEELGQRTKSHTKRDASTPLRSTENGIVDQVLITTNAEG 1006
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 1007 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHA 1062
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS L +G ++ G
Sbjct: 1063 IPSRMTIAHLIECQLSKVASLIGKEGDATPFTDVT--------VDSVSSRLRDMGYQSRG 1114
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1115 FEVMYHGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1160
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PV R R GG+ FGEM+ DC+I+HGAS L ERL C + + +
Sbjct: 1161 TRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHVCDICGLMTPIAK 1220
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
CR C + I + ++PY KLL QEL+ SM I + T SGVS+
Sbjct: 1221 LNTQSFECRPCRNKTKISQVHIPYATKLLFQELA-SMNIAARMFTNRSGVSV 1271
>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
NIH/UT8656]
Length = 1263
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 182/408 (44%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P+ +D +
Sbjct: 883 MNQSSIDRGLFRSLFYRTYQDSEKSVGHSVVEQFEKPTRADTLRLKHGTYDKIDEDGIVA 942
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI++GK A + D S L+ TE G+V +V+L++ +G
Sbjct: 943 PGVRVSGEDIIMGKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEG 1002
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
FA V +R + +GDKF+S HGQKG +G E P
Sbjct: 1003 HRFAKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHA 1058
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T +T+ +S+LL +G ++ G
Sbjct: 1059 IPSRMTIAHLIECQLSKVATLRGDEGDATPFTKVT---VTQ-----ISELLRNMGYQSRG 1110
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1111 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHSRARGPTQIL 1156
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + VI +
Sbjct: 1157 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHVCDICGLMTVIAK 1216
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ CN+ + I + +PY AKLL QEL ++M I + T+ S
Sbjct: 1217 LKKNTFECKNCNNKNKISQIYLPYAAKLLFQEL-WAMNIAARLYTKRS 1263
>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
hirsutum FP-91666 SS1]
Length = 1230
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 178/411 (43%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 845 MNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIA 904
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 905 PGTGVNGEDIIIGKTAPIPPDSEELGQRTRIHTRRDVSTPLKSTESGIVDQVLITTNHEG 964
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V +R + +GDKF+S HGQKG +G E P
Sbjct: 965 QKFVKVRVRAT----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHA 1020
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VSQ L G ++ G
Sbjct: 1021 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSQFLRAQGYQSRG 1072
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1073 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1118
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG +G L ERL +AN+
Sbjct: 1119 TRQPVEGRSRDGGLRFGEMERDCMISHGVAGFLKERLFDASDAYRLHVCDICGLTAIANL 1178
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + ++PY AKLL QEL SM I + T +G
Sbjct: 1179 KKQSFE---CRACKNKTACSQIHIPYAAKLLFQELQ-SMNIAARLYTTSTG 1225
>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
Length = 1261
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 178/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P +D +
Sbjct: 876 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I A D S L+ TE G+V V+++ N D
Sbjct: 936 PGVRVSGEDIIIGKTAPIDAETQDLGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADN 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 996 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1052 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1104 FEIMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1210 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGASV 1260
>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
Length = 1222
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 174/408 (42%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS ES++ +++K + DD L
Sbjct: 839 MNQSSIDSGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIA 898
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N +G
Sbjct: 899 PGVRVSGDDIIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEG 958
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 959 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHA 1014
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T I S+LL G ++ G
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGI--------SKLLREHGYQSRG 1066
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1067 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1112
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A V+ +
Sbjct: 1113 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAK 1172
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C + DI + ++PY AKLL QEL +M I + T S
Sbjct: 1173 LKHNQFECRGCKNKIDIYQVHIPYAAKLLFQEL-MAMNIAPRLYTDRS 1219
>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
77-13-4]
gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 178/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P +D +
Sbjct: 876 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFQQSTLRMKHGTYDKLDEDGIVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V V+++ N D
Sbjct: 936 PGVRVSGEDIIIGKTAPIDQENQDLGTRTTVHQRRDISTPLRSTENGIVDSVIVTVNADN 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 996 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGVTPDIIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1052 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1104 FEIMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEVCGLMTPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SGVS+
Sbjct: 1210 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTSRSGVSI 1260
>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces pombe]
Length = 1210
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 168/405 (41%), Gaps = 103/405 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQAS++ G+FRS Y+ D + ++ RP DD L
Sbjct: 830 MNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIA 889
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I DH S L+ TE G+V +V++++N +G
Sbjct: 890 PGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEG 949
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 950 LKFVKVRMRST----RIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHA 1005
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T VS+LL G ++ G
Sbjct: 1006 IPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEA--------VSKLLRSHGFQSRG 1057
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ H+ +DK+ R G Q L
Sbjct: 1058 FEVMYHGHTGRKLV--------------AQVFLGPTYYQRLKHLVDDKIHARARGPVQIL 1103
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANVIQRVVGGPY----- 290
T +PV R R GG+ FGEM+ DC I+HG S L ERL C + VI + G
Sbjct: 1104 TRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASY 1163
Query: 291 ------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + + +PY AKLL QEL SM I + T+
Sbjct: 1164 KKDSYECRSCQNRTRFSQVYLPYAAKLLFQEL-MSMNIAPRLFTK 1207
>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
972h-]
gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa
polypeptide
gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
Length = 1210
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 168/405 (41%), Gaps = 103/405 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQAS++ G+FRS Y+ D + ++ RP DD L
Sbjct: 830 MNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIA 889
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I DH S L+ TE G+V +V++++N +G
Sbjct: 890 PGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEG 949
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 950 LKFVKVRMRST----RIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHA 1005
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T VS+LL G ++ G
Sbjct: 1006 IPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEA--------VSKLLRSHGFQSRG 1057
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ H+ +DK+ R G Q L
Sbjct: 1058 FEVMYHGHTGRKLV--------------AQVFLGPTYYQRLKHLVDDKIHARARGPVQIL 1103
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANVIQRVVGGPY----- 290
T +PV R R GG+ FGEM+ DC I+HG S L ERL C + VI + G
Sbjct: 1104 TRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASY 1163
Query: 291 ------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + + +PY AKLL QEL SM I + T+
Sbjct: 1164 KKDSYECRSCQNRTRFSQVYLPYAAKLLFQEL-MSMNIAPRLFTK 1207
>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
Length = 1270
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 178/414 (42%), Gaps = 110/414 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + ++ +P +D +
Sbjct: 885 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVA 944
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +V+L+ N D
Sbjct: 945 PGVRVSGEDIIIGKTAPIDQENQDLGTRTQSHQRRDISTPLRSTENGIVDQVILTVNADN 1004
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1005 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHA 1060
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1061 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1112
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1113 FEVMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1158
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1159 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIAN 1218
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVS 334
+ ++ CR C + I + ++PY AKLL QEL +M I + T SGVS
Sbjct: 1219 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-AMNIAARMFTNRSGVS 1268
>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
Length = 1261
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 177/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P +D +
Sbjct: 876 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G++ V+L+ N D
Sbjct: 936 PGVRVSGEDIIIGKTAPIDQENQDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADN 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 996 VKYVKVRVRTT----KVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1052 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1104 FEIMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1210 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1260
>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
Length = 1261
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 177/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P +D +
Sbjct: 876 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G++ V+L+ N D
Sbjct: 936 PGVRVSGEDIIIGKTAPIDQENQDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADN 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 996 VKYVKVRVRTT----KVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1052 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1104 FEIMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1210 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1260
>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
Length = 1261
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 177/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + +V +P +D +
Sbjct: 876 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G++ V+L+ N D
Sbjct: 936 PGVRVSGEDIIIGKTAPIDQENQDLGTRTSVHQRRDISTPLRSTENGIIDSVILTVNADN 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 996 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS+LL G ++ G
Sbjct: 1052 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSELLRKHGYQSRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1104 FEIMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1210 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTNRSGASI 1260
>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 170/406 (41%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS-------------------RPSDDMLNF 38
MNQ+S++ G FRS SY+ E VK + DD
Sbjct: 821 MNQSSIDRGFFRSIFYRSYRDEEKKMGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAP 880
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HS L+H+E G+V +VLL++N DG
Sbjct: 881 PGTRVAGEDVIIGKTTPIAPDDAQGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLR 940
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R + +GDKFSS HGQKG +G E P
Sbjct: 941 FVKMRMRS----IRIPQIGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICPDIIVNPHAIP 996
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 997 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1048
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + P+ + IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1049 RMYNGHT-----GRPLTYT---------IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1094
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL ++ +AN+ +
Sbjct: 1095 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCALCGIVAIANLKK 1154
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ +PY KLL QEL +M I + T+
Sbjct: 1155 NSFE---CRHCKNKTDIVQVYIPYACKLLLQEL-MAMAIAPRLLTK 1196
>gi|67515350|gb|AAY68204.1| RNA polymerase IV second largest subunit [Selaginella erythropus]
Length = 593
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 171/381 (44%), Gaps = 85/381 (22%)
Query: 1 MNQASLECGVFRSESY---KAEVDNKDIQVKSRPSDDM------LNFGKIQSKSGDIVIG 51
+NQAS++ G+FRS + KA +D+K Q + SD L + + +GD+VIG
Sbjct: 243 VNQASVDRGLFRSTHFFVKKASLDSKSSQHFGKSSDSASLDSDGLPYIGAKMTAGDVVIG 302
Query: 52 KYAEIGADHSI--KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC--LGDKF 107
+ A + K+ + E+ V +V+ S ++ V +V + S C +GDKF
Sbjct: 303 RMALTKPXNKFVDKMSNLEQAWVDQVVCSMGEEQDQRHV-----NVRLRESRCPQVGDKF 357
Query: 108 SSMHGQKGVLGFL--------------------------EQTPAQLLEAALGKGACDGLM 141
SSMHGQKGV+G + QT AQ+LE+ +GK A GL
Sbjct: 358 SSMHGQKGVVGMMLSQEDLLFTQQGIVPDVIINPHAFPSRQTLAQMLESLVGKTAAMGLC 417
Query: 142 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 201
TPF T ++Q L G + G D + C
Sbjct: 418 LGDTPF--------THLRAEQLAQKLAKRGFQKWG-----------------QDRVYSGC 452
Query: 202 LVR---SLIFTWITFYQQFIHMSEDKVKFRN-TGSFQPLTGRPVADRKRFGGIEFGEMKC 257
R ++ +TFYQ+ H+S DK+K R G PLT +PV DR+R GG +FGEM+
Sbjct: 453 TGRMTGAMATFGLTFYQRLNHLSRDKMKCRGGNGPVHPLTHQPVKDRRRQGGTKFGEMER 512
Query: 258 DCLIAHGASGNLHERL----------KCKNVANVIQ-RVVGGPYCRICNSADDIIKANVP 306
DCL+AHGAS + ERL C N + P C C + +P
Sbjct: 513 DCLVAHGASATVQERLFLVSDKSLVHVCANCCRLASFNSQQQPGCLFCKRXQRPVAVEMP 572
Query: 307 YGAKLLSQELSFSMGITLKFD 327
Y KLL EL +MG+ ++F+
Sbjct: 573 YACKLLRMELQ-AMGVDMRFZ 592
>gi|414871743|tpg|DAA50300.1| TPA: putative DNA-directed RNA polymerase II subunit family protein
[Zea mays]
Length = 362
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 153/352 (43%), Gaps = 85/352 (24%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSS 79
DD L + D++IGK + I D HS L+H+E G+V +VLL++
Sbjct: 30 DDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTT 89
Query: 80 NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------ 124
N DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 90 NADGLRFVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIV 145
Query: 125 -----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA 172
QL+E +GK A G ATPF T +S+ L+
Sbjct: 146 NPHAIPSRMTIGQLIECIMGKVAAQMGKEGDATPFTDVT--------VDNISKALHKCNY 197
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
+ G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 198 QMRGFETMYNGHTGRKLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRGP 243
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK--N 277
Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL KC
Sbjct: 244 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 303
Query: 278 VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+AN+ + CR C + DI++ ++PY KLL QEL +M I + T
Sbjct: 304 IANLKKNSF---ECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTH 351
>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
98AG31]
Length = 1257
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 174/405 (42%), Gaps = 109/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD----IQVKS--RPS----------------DDMLNF 38
MNQ+S++ G+FRS Y++ +D + +Q++ +PS DD +
Sbjct: 867 MNQSSIDRGLFRSFYYRSYMDQEKKAGALQMEEFEKPSRENTLRLKHGTYEKLDDDGIIT 926
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I D S+ LK TE G++ +VL+++N DG
Sbjct: 927 PGTRVSGDDIIIGKTAPIPPDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVLITTNQDG 986
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V IR + GDKF+S HGQKG +G L E P
Sbjct: 987 LKFVKVRIRST----RIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGICPDIIINPHA 1042
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K G ATPF+ T I S LL G ++ G
Sbjct: 1043 IPSRMTIGHLVECLLSKVSTITGNEGDATPFSEVTVEAI--------SSLLKDNGYQSRG 1094
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L R+ + T+YQ+ HM DK+ R G Q L
Sbjct: 1095 LEIMYNGHTGRKL--------------RAQCYLGPTYYQRLKHMVNDKIHSRARGPVQIL 1140
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
T +PV R R GG+ FGEM+ DC+I+HG +G L ER+ C +AN+
Sbjct: 1141 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMFDVSDAYRVHVCDICGMVAIANL 1200
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
++ CR C + I + +PY AKLL QEL SM I +F
Sbjct: 1201 KKQSFE---CRACRNKTAISQVYIPYAAKLLFQELQ-SMNIASRF 1241
>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1174
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 170/403 (42%), Gaps = 102/403 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MNQ++++ G+FRS Y++ D + Q RP DD L
Sbjct: 798 MNQSAIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIC 857
Query: 39 GKIQSKSGDIVIGKYAEIGADH-------------SIKLKHTERGLVLKVLLSSNDDGKN 85
+ DI+IGK A + D S +KH E G++ +VLL++ND G
Sbjct: 858 PGTRVSGDDIIIGKTAPLPEDDTAVLSKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLR 917
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R + + +GDKFSS HGQKG +G E P
Sbjct: 918 FVKLRVRS----MRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIP 973
Query: 125 -----AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK AC G ATPF T +S +L+ G + G
Sbjct: 974 SRMTIGQLVECIMGKVAACMGKEGDATPFTPVTA--------EDISSMLHKCGYQKRGNE 1025
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + ++ + IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1026 VMYNGHTGR--------------MLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1071
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P+ R R GG+ FGEM+ DC+++HGA+ L ERL KC +A +
Sbjct: 1072 QPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKN 1131
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ + +++ VPY KLL QEL SM I + T
Sbjct: 1132 QTFECCKNPSERTSVVQVMVPYACKLLFQEL-MSMAIAPRLIT 1173
>gi|224031673|gb|ACN34912.1| unknown [Zea mays]
gi|413933608|gb|AFW68159.1| putative DNA-directed RNA polymerase II subunit family protein [Zea
mays]
Length = 362
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 153/352 (43%), Gaps = 85/352 (24%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSS 79
DD L + D++IGK + I D HS L+H+E G+V +VLL++
Sbjct: 30 DDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTALRHSESGMVDQVLLTT 89
Query: 80 NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------ 124
N DG F V +R V +GDKFSS HGQKG +G E P
Sbjct: 90 NADGLRFVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIV 145
Query: 125 -----------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA 172
QL+E +GK A G ATPF T +S+ L+
Sbjct: 146 NPHAIPSRMTIGQLIECIMGKVAAQMGKEGDATPFTDVT--------VDNISKALHKCNY 197
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
+ G ++ + L ++IF T+YQ+ HM +DK+ R G
Sbjct: 198 QMRGFETMYNGHTGRKLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRGP 243
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK--N 277
Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL KC
Sbjct: 244 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 303
Query: 278 VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+AN+ + CR C + DI++ ++PY KLL QEL +M I + T
Sbjct: 304 IANLKKNSF---ECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTH 351
>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
Length = 1221
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 175/408 (42%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS ES++ +++K + DD L
Sbjct: 838 MNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIA 897
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N +G
Sbjct: 898 PGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEG 957
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTP------------------- 124
F V +R + +GDKF+S HGQKG +G +T
Sbjct: 958 LKFVKVRVRTT----KIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHA 1013
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T I S+LL G ++ G
Sbjct: 1014 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGI--------SRLLREHGYQSRG 1065
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1066 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1111
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A +V+ +
Sbjct: 1112 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAK 1171
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C + DI + ++PY AKLL QEL +M I + T S
Sbjct: 1172 LKHNQFECRSCKNKIDIYQVHIPYAAKLLFQEL-MAMNIAPRLYTDRS 1218
>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
Length = 1219
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 178/396 (44%), Gaps = 101/396 (25%)
Query: 1 MNQASLECGVFRS---ESYKAE---VDNKDIQVKSRP-----------------SDDMLN 37
MNQ+S++ G+FRS +Y +E V + ++ RP +D ++
Sbjct: 850 MNQSSIDRGLFRSAFNRTYISEEKYVGSTIVERFERPGTANILGLKRGDYTKLDADGLVE 909
Query: 38 FGKIQSKSGDIVIGKYA-----EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
G + DI+IG+ + ++ D S L+ E G+V VL+S N G FA V +R
Sbjct: 910 PGS-RVMGDDIIIGRTSTADEEDMRQDCSCCLRANENGVVDTVLVSVNAKGTKFAKVKVR 968
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFLEQT---------------------PAQ----- 126
V +GDKF+S HGQKG +G +T P++
Sbjct: 969 S----VRVPQIGDKFASRHGQKGTIGITYRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGH 1024
Query: 127 LLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYF 185
L+E +GK GAC G+ ATPF+ T I E+ L +C AR+ F
Sbjct: 1025 LVECLIGKVGACCGMEGDATPFSKLTVQQIAER-------LFDCGYARHGNEAF------ 1071
Query: 186 LFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRK 245
C F M + S IF T+YQ+ HM EDK+ R+ G LT +P R
Sbjct: 1072 -HCGFTGQM--------ITSRIFVGPTYYQRLKHMVEDKIHARSRGPSTMLTRQPTEGRS 1122
Query: 246 RFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPY 290
R GG+ FGEM+ DC+I+HGA+ L ERL C N +A++ +
Sbjct: 1123 REGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRIHVCDNCGLCCIADLNKSSFE--- 1179
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C C++ +I + +PY KLL QEL SM I K
Sbjct: 1180 CTACDNKTNISQVAIPYACKLLIQEL-MSMAIYPKL 1214
>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
edodes]
Length = 1228
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 177/411 (43%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 844 MNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIA 903
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 904 PGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEG 963
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F + +R + +GDKF+S HGQKG +G E P
Sbjct: 964 QKFVKIRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHA 1019
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS L G ++ G
Sbjct: 1020 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSMFLKQKGYQSRG 1071
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ +F + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1072 LEVMFHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1117
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG +G L ERL +AN+
Sbjct: 1118 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRVHVCEICGLTAIANL 1177
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + + +PY AKLL QEL SM I + T SG
Sbjct: 1178 KKQSFE---CRACKNKTAVSQLYIPYAAKLLFQELQ-SMNIAARLYTVSSG 1224
>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
Length = 1269
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 178/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + ++ +P +D +
Sbjct: 884 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVA 943
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +V+L+ N D
Sbjct: 944 PGVRVSGEDIIIGKTAPIDQENQDLGTRTQTHQRRDISTPLRSTENGIVDQVILTVNADN 1003
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 1004 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHA 1059
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS +L G ++ G
Sbjct: 1060 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSDILRKHGYQSRG 1111
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1112 FEVMYNGHTGRKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1157
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1158 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIAN 1217
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL +M I + T SGVS+
Sbjct: 1218 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-AMNIAARMFTNRSGVSI 1268
>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1131
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 172/405 (42%), Gaps = 109/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNK---------DIQVKSRPS-------------DDMLNF 38
MNQ+S++ G+FRS Y++ +D + + + +R S DD +
Sbjct: 741 MNQSSIDRGLFRSFYYRSYMDQEKRAGALQMEEFEKPTRDSTLRLKHGTYDKLDDDGIIT 800
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I D S+ LK TE G++ +VL+++N DG
Sbjct: 801 PGTRVSGDDIIIGKTAPIPKDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVLVTTNQDG 860
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V IR + GDKF+S HGQKG +G L E P
Sbjct: 861 LKFVKVRIRST----RIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGVCPDIIINPHA 916
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K G ATPF+ T I S LL G ++ G
Sbjct: 917 IPSRMTIGHLVECLLSKVSTITGNEGDATPFSEVTVEAI--------SALLKDKGYQSRG 968
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ +F + L R+ + T+YQ+ HM DK+ R G Q L
Sbjct: 969 LEIMFNGHTGKKL--------------RAQCYLGPTYYQRLKHMVNDKIHSRARGPVQIL 1014
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
T +PV R R GG+ FGEM+ DC+I+HG +G L ER+ C +AN+
Sbjct: 1015 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMFDVSDAYRVHVCDFCGMVAIANL 1074
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
++ CR C + I + +PY AKLL QEL SM I +F
Sbjct: 1075 KKQSF---ECRSCRNKTAISQVYIPYAAKLLFQELQ-SMNIASRF 1115
>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
Length = 1184
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 178/403 (44%), Gaps = 101/403 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPSDDML------NFGKIQSKS--- 45
MNQ+S++ G+FRS ++ V + I+ P+ D + N+G +
Sbjct: 807 MNQSSIDRGLFRSVFFRTYVSEEKQIGSNLIEAFELPNPDEVSGLRFGNYGNLDRDGLIE 866
Query: 46 -------GDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
DI+IGK+ I D SI L+ +E G+V +VLLS+N G
Sbjct: 867 PGNRVLGDDIIIGKFGPIPPEERDNRIERLTKRDCSIGLRSSEHGVVDEVLLSTNSKGVK 926
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF---LEQTP------------------ 124
F V +R ++ + H +GDKF+S HGQKG +G +E P
Sbjct: 927 FTKVKVR-TIRVPH---IGDKFASRHGQKGTIGITYRMEDMPFTQDGIVPDIIMNPHAIP 982
Query: 125 -----AQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
L+E LGK A +G+ ATPF V E+ +S L+ G + +G
Sbjct: 983 SRMTIGHLIECILGKTCAIEGMEGDATPFTK----VTVEE----ISNRLHAAGFQRNGNE 1034
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L S IF T+YQ+ HM +DK+ R G+ LT
Sbjct: 1035 VMYNGHTGRQL--------------ESRIFIGPTYYQRLKHMVDDKIHARAKGAITMLTR 1080
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 288
+P R R GG+ FGEM+ DC+I+HGA+ L ERL C+ + +G
Sbjct: 1081 QPREGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQCDAYRVHVCELCGLICTADLGK 1140
Query: 289 PY--CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ C++C++ I + +PY KLL QEL +M I + Q
Sbjct: 1141 QHYECKVCSNKSQISQVCLPYACKLLLQEL-MAMSIYPRLQLQ 1182
>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
Length = 1222
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 174/408 (42%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS ES++ +++K + DD L
Sbjct: 839 MNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIA 898
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N +G
Sbjct: 899 PGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEG 958
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 959 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTSEGVVPDLIINPHA 1014
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T I S+LL G ++ G
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGI--------SRLLREHGYQSRG 1066
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1067 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1112
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A V+ +
Sbjct: 1113 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAK 1172
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C + DI + ++PY AKLL QEL +M I + T S
Sbjct: 1173 LKHNQFECRGCKNKIDIFQVHIPYAAKLLFQEL-MAMNIAPRLYTDRS 1219
>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
T-34]
Length = 1240
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 177/405 (43%), Gaps = 109/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEV-DNKDIQVK-----SRPSDDML------NFGKIQSK---- 44
MNQ+S++ G RS Y+ + + K + V +P D + KI +
Sbjct: 865 MNQSSIDRGFMRSLYYRGYMAEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLVA 924
Query: 45 -----SGD-IVIGKYA-------EIG--------ADHSIKLKHTERGLVLKVLLSSNDDG 83
SGD ++IGK A E+G D SI LK TE G++ +VLL++N +G
Sbjct: 925 PGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSNG 984
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R S GDKF+S HGQKG +G + E P
Sbjct: 985 NKFVKVRVRNS----RVPQTGDKFASRHGQKGTVGIMYRQEDMPFSAEGITPDIIINPHA 1040
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF TE VS +L +G ++ G
Sbjct: 1041 IPSRMTIGHLVECLLSKVAALSGQEGDATPF--------TELTVEAVSSILRGLGYQSRG 1092
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + + ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1093 LEVMYHGHTGRKM--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1138
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+IAHG +G L ER+ +AN+
Sbjct: 1139 TRQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKERMFDVSDPYRIHVCDLCGLTALANL 1198
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ G CR C + I + ++PY AKLL QEL S+ + L+
Sbjct: 1199 KK---GTYECRSCRNRTAISQIHIPYAAKLLMQELQ-SVNVALRL 1239
>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
Length = 1202
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 175/395 (44%), Gaps = 96/395 (24%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNK---DIQVKSRPSDDML------NFGKIQSKS--- 45
MNQ+S++ G+FRS +Y +E + I+ RP+ + ++ K+ S
Sbjct: 830 MNQSSIDRGLFRSVFNRTYVSEEKQQGSVTIEKFERPNPQFVAGMKRGDYSKLDSDGLVE 889
Query: 46 -------GDIVIGKYAEI--------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 90
D++IG+ + D S+ L+ +E G+V VLLS N G F V
Sbjct: 890 PGSRVLGDDVIIGRISPTLPNQDVAPKRDCSLCLRRSENGVVHSVLLSVNSKGSRFCKVK 949
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVLGF---LEQTP----------------------- 124
+R V +GDKF+S HGQKG +G +E P
Sbjct: 950 VRS----VRIPQIGDKFASRHGQKGTIGITYRMEDMPFTCQGIVPDIIMNPHAVPSRMTI 1005
Query: 125 AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 183
L+E +GK GA GL ATPF++ T I + L+ +G G ++
Sbjct: 1006 GHLVECLVGKVGAIGGLEGDATPFSSLTVKEIASK--------LHELGYERHGNEALYNG 1057
Query: 184 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
Y L++S IF T+YQ+ HM EDK+ R G LT +P
Sbjct: 1058 YTGR--------------LLKSKIFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEG 1103
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVAN-----------VIQRVVGGPY-C 291
R R GG+ FGEM+ DC+I+HGA+ L ERL ++ A VI + G + C
Sbjct: 1104 RSRDGGLRFGEMERDCMISHGAAKVLKERLFDQSDAYRVHVCDMCGLIVIADLNRGSFEC 1163
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C++ +I + ++PY KLL QEL SM I K
Sbjct: 1164 SACDNKTNISQVSIPYACKLLLQEL-MSMAIYPKL 1197
>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
ARSEF 2860]
Length = 1261
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 177/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + ++ +P +D +
Sbjct: 876 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +V+++ N D
Sbjct: 936 PGVRVSGEDIIIGKTAPIDPETQDLGARTTAHQRRDISTPLRSTENGIVDQVIVTVNADN 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 996 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS LL G ++ G
Sbjct: 1052 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSDLLRKHGYQSRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1104 FEIMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1210 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTDRSGASI 1260
>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
Length = 1178
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 169/386 (43%), Gaps = 73/386 (18%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP+ DD +
Sbjct: 791 MNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAP 850
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + D S L+H+E G++ +VLL++N DG
Sbjct: 851 PGTRVSGEDVIIGKTTPLAQDETGTQAQRYSKRDQSTCLRHSESGMIDQVLLTTNADGLR 910
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYAT 145
F ++ V + +GDKFSS HGQKG +G T Q +G ++
Sbjct: 911 F----VKTRVRSIRIPQIGDKFSSRHGQKGTIGM---TYTQEDMPFTQEGITPDII--VN 961
Query: 146 PFATSTGGVITEQHQSFVSQLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL- 202
P A + I + + + ++ +G F + L +C F +
Sbjct: 962 PHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCNYQLRGFETMY 1021
Query: 203 -------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 255
+ ++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM
Sbjct: 1022 NGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1081
Query: 256 KCDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDI 300
+ DC+IAHGA+ L ERL C++ +AN+ + CR C + +I
Sbjct: 1082 ERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTFE---CRSCKNKTEI 1138
Query: 301 IKANVPYGAKLLSQELSFSMGITLKF 326
++ ++PY KLL QEL +M I +
Sbjct: 1139 VQVHIPYACKLLFQEL-MAMAIAPRM 1163
>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella nidulans]
Length = 1009
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 167/390 (42%), Gaps = 105/390 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-----------------SDDMLN 37
MNQ+S++ G+FRS Y+ D++ ++ +P D ++N
Sbjct: 647 MNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVN 706
Query: 38 FGKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDD 82
G ++ DI+IGK A + D S L+ TE G+V +VL+++ D
Sbjct: 707 PG-VRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPD 765
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
++ S++ + M +GDKF+S HGQKG +G E P
Sbjct: 766 ----SLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPH 821
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
A L+E L K A G ATPF T I S+LL G ++
Sbjct: 822 AIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSI--------SRLLREHGYQSR 873
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + L + +F T+YQ+ HM +DK+ R G Q
Sbjct: 874 GFEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQI 919
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +PV R R GG+ FGEM+ DC+IAHGAS L ERL C + +
Sbjct: 920 LTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIA 979
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLL 312
+ G CR+CN+ I + ++PY AKLL
Sbjct: 980 KLKKGLFECRLCNNKHRISQVHIPYAAKLL 1009
>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
Length = 1220
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 174/408 (42%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS ES++ +++K + DD L
Sbjct: 837 MNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPQRTNTLRMKHGTYDKLDDDGLIA 896
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N +G
Sbjct: 897 PGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEG 956
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 957 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHA 1012
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T I S+LL G ++ G
Sbjct: 1013 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGI--------SRLLREHGYQSRG 1064
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1065 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPVQVL 1110
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A V+ +
Sbjct: 1111 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGVCGLMTVVAK 1170
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C + DI + ++PY AKLL QEL +M I + T S
Sbjct: 1171 LKHNQFECRGCKNKIDIYQIHIPYAAKLLFQEL-MAMNIAPRLYTDRS 1217
>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 999
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 166/382 (43%), Gaps = 81/382 (21%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPSDDM---LNFGKIQSKSGDIVIG 51
MNQ++++ G+FRS Y++ D + Q RP D + G D +I
Sbjct: 644 MNQSAIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIY 703
Query: 52 KYAEIGA-----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDK 106
A + D S +KH E G++ +VLL++ND G F + +R + + +GDK
Sbjct: 704 DSAVLSKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRS----MRTPQVGDK 759
Query: 107 FSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDG 139
FSS HGQKG +G E P QL+E +GK AC G
Sbjct: 760 FSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMG 819
Query: 140 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAF 199
ATPF T +S +L+ G + G ++ +
Sbjct: 820 KEGDATPFTPVTA--------EDISTMLHKCGYQKRGNEVMYNGHTGR------------ 859
Query: 200 ICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDC 259
++ + IF T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ DC
Sbjct: 860 --MLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDC 917
Query: 260 LIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVP 306
+++HGA+ L ERL KC +A + C+ + +++ VP
Sbjct: 918 IMSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFECCKNPSERTSVVQVMVP 977
Query: 307 YGAKLLSQELSFSMGITLKFDT 328
Y KLL QEL SM I + T
Sbjct: 978 YACKLLFQEL-MSMAIAPRLIT 998
>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
delicata TFB-10046 SS5]
Length = 1217
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 177/411 (43%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 833 MNQSSIDRGLFRSIYYRSYMDVEKKSGMVALEEFEKPTRDTTLRMKHGTYDKLEDDGLIA 892
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A + D S LK TE G+V +VL+++N DG
Sbjct: 893 PGTGVAGEDIIIGKTAPLPQDSEELGQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQDG 952
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F + IR + +GDKF+S HGQKG +G E P
Sbjct: 953 QKFVKIRIRST----RVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGVTPDIIINPHA 1008
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VSQ+L G + G
Sbjct: 1009 IPSRMTIGHLVECLLSKVATMIGNEGDATPF--------TDLTVESVSQVLRQRGYHSRG 1060
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1061 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1106
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1107 TRQPVEGRSRDGGLRFGEMERDCMISHGLAAFLKERLFDASDAYRLHVCDICGLTAIANL 1166
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + + +PY AKLL QEL SM I + T +G
Sbjct: 1167 KKQSFE---CRACKNKVAVSQLYIPYAAKLLIQELQ-SMNIAARLYTVSTG 1213
>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
Length = 1178
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 170/386 (44%), Gaps = 73/386 (18%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP+ DD +
Sbjct: 791 MNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAP 850
Query: 39 GKIQSKSGDIVIGKYA-----EIGA--------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK E G D S L+H+E G++ +VLL++N DG
Sbjct: 851 PGTRVSGEDVIIGKTTPLVQDETGTQAQRYSKRDQSTCLRHSESGMIDQVLLTTNADGLR 910
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYAT 145
F ++ V + +GDKFSS HGQKG +G T Q +G ++
Sbjct: 911 F----VKTRVRSIRIPQIGDKFSSRHGQKGTIGM---TYTQEDMPFTQEGITPDII--VN 961
Query: 146 PFATSTGGVITEQHQSFVSQLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL- 202
P A + I + + + ++ +G F + L +C F +
Sbjct: 962 PHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCNYQLRGFETMY 1021
Query: 203 -------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 255
+ ++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM
Sbjct: 1022 NGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1081
Query: 256 KCDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVGGPYCRICNSADDI 300
+ DC+IAHGA+ L ERL C++ +AN+ + CR C + +I
Sbjct: 1082 ERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTFE---CRSCKNKTEI 1138
Query: 301 IKANVPYGAKLLSQELSFSMGITLKF 326
++ ++PY KLL QEL +M I +
Sbjct: 1139 VQVHIPYACKLLFQEL-MAMAIAPRM 1163
>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
Length = 1261
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 177/415 (42%), Gaps = 110/415 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ D + ++ +P +D +
Sbjct: 876 MNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +V+++ N D
Sbjct: 936 PGVRVSGEDIIIGKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADN 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 996 VKYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K +G+ ATPF T VS LL G ++ G
Sbjct: 1052 IPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVT--------VDSVSDLLRKHGYQSRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1104 FEIMYNGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK------NVAN 280
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL C+ +AN
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIAN 1209
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ ++ CR C + I + ++PY AKLL QEL SM I + T SG S+
Sbjct: 1210 LSKQSFE---CRPCKNKTKIAQIHIPYAAKLLFQELQ-SMNIAARMFTDRSGASI 1260
>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
B]
Length = 1242
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 177/411 (43%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D +++K D + + G I
Sbjct: 858 MNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPSRENTLRMKHGTYDKLEDDGLIA 917
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G++ +VL+++N +G
Sbjct: 918 PGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEG 977
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F + +R + GDKF+S HGQKG +G E P
Sbjct: 978 QKFVKIRVRST----RIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHA 1033
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VSQ+L G ++ G
Sbjct: 1034 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSQVLRQKGYQSRG 1085
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1086 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1131
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1132 TRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANL 1191
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
+++ CR C + I + +PY AKLL QEL SM I + T +G
Sbjct: 1192 KKQMFE---CRSCKNKTAISQLYIPYAAKLLFQELQ-SMNIAARLYTTSTG 1238
>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus gattii
WM276]
Length = 1193
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 113/398 (28%), Positives = 170/398 (42%), Gaps = 111/398 (27%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSD-------DM 35
MNQ+S++ G+FRS +++ D N+ +++K SD D
Sbjct: 811 MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTSDRYAKLDVDG 870
Query: 36 LNFGKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSN 80
L DI+IGK A + D S LK TE+G+V +V+LS+N
Sbjct: 871 LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 930
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
+G F + +R + +GDKF+S HGQKG +G E P
Sbjct: 931 GEGNMFVKIRVRST----RVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIIN 986
Query: 125 ----------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E L K G ATPF TE VS++L G +
Sbjct: 987 PHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPF--------TELTVEAVSKVLRAKGYQ 1038
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
+ G ++ + L ++ ++ T+YQ+ HM +DK+ R G
Sbjct: 1039 SRGFEVLYHGHTGRKL--------------QAQVYFGPTYYQRLKHMVDDKIHARARGPL 1084
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------V 278
Q LT +PV R R GG+ FGEM+ DC+I+HG +G L ER+ + V
Sbjct: 1085 QILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDICGLMAV 1144
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
AN+ ++ YC +C ++ I + +PY AKLL QEL
Sbjct: 1145 ANLKKQEF---YCSVCRNSTQISQVYIPYAAKLLFQEL 1179
>gi|109289915|gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
Length = 1018
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 81/116 (69%), Gaps = 23/116 (19%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVDNK+ K +D +NFGK QSK
Sbjct: 877 MNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFP 936
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQ 93
SGDI+IGKYAE GADHS+K+KHTERG+V KVLLS+NDDGKNFAVVS+RQ
Sbjct: 937 FIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVSLRQ 992
>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
Length = 670
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 173/403 (42%), Gaps = 101/403 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPSDDMLN------FGKIQSKS--- 45
MNQ+S++ G RS SY+ E + K +P+ D+ + + K+ S
Sbjct: 287 MNQSSIDRGFHRSIFYRSYRDEEKKQGTLTKEEFEKPNRDITSGMRHGSYDKLDSDGIAP 346
Query: 46 -------GDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
D++IGK + D S L+H+E G++ +V+L+ N+DG
Sbjct: 347 PGTRVAGEDVIIGKTMPLPQDDSGTQAQRFTKRDQSTTLRHSESGMIDQVILTINNDGFR 406
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R + +GDKF+S HGQKG +G E P
Sbjct: 407 FVKIRVRS----IRIPQIGDKFASRHGQKGTIGMTYTQEDMPFSQEGISPDLVVNPHAIP 462
Query: 125 -----AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
L+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 463 SRMTIGHLIECLMGKVAALMGKEGDATPFTDVTVDSI--------SRALHSCGYQMRGFE 514
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++ IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 515 VMYNGHTGRKL--------------QAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 560
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 288
+P R R GG+ FGEM+ DC+IAHGA+ L ERL C++ + +
Sbjct: 561 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIANANLKK 620
Query: 289 PY--CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL SM I + T+
Sbjct: 621 SFFECRGCKNKTDIVQVHIPYACKLLFQEL-MSMAIAPRMMTR 662
>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
var. grubii H99]
Length = 1245
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 171/398 (42%), Gaps = 111/398 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ--VKSRPSDDMLNFGKIQSKSG------------ 46
MNQ+S++ G+FRS +++ D + ++ VK+ + ++ K G
Sbjct: 863 MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDG 922
Query: 47 -----------DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSN 80
DI+IGK A + D S LK TE+G+V +V+LS+N
Sbjct: 923 LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 982
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
+G F + +R + +GDKF+S HGQKG +G E P
Sbjct: 983 GEGNMFVKIRVRST----RVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIIN 1038
Query: 125 ----------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E L K G ATPF TE VS++L G +
Sbjct: 1039 PHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPF--------TELTVEAVSKVLRAKGYQ 1090
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
+ G ++ + L ++ ++ T+YQ+ HM +DK+ R G
Sbjct: 1091 SRGFELLYHGHTGRKL--------------QAQVYFGPTYYQRLKHMVDDKIHARARGPL 1136
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------V 278
Q LT +PV R R GG+ FGEM+ DC+I+HG +G L ER+ + V
Sbjct: 1137 QILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAV 1196
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
AN+ ++ YC +C ++ I + +PY AKLL QEL
Sbjct: 1197 ANLKKQEF---YCSVCRNSTQISQVYIPYAAKLLFQEL 1231
>gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
Length = 629
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 143/336 (42%), Gaps = 89/336 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+AE VK RP DD L
Sbjct: 288 MNQSSIDRGFFRSLFFRSYRAEXKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAP 347
Query: 39 GKIQSKSGDIVIGKYAEIGAD--------------HSIKLKHTERGLVLKVLLSSNDDGK 84
+ D++IGK I D HS L+H+E G+V +VLL++N DG
Sbjct: 348 PGTRVSGEDVIIGKTTPITPDEAQGQANARYTKRDHSTSLRHSETGMVDQVLLTTNADGL 407
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 408 RFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGINPDIIVNPHAI 463
Query: 125 ------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
QL+E +GK A G ATPF T +S+ L+ G + G
Sbjct: 464 PSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGY 515
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ + L S+IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 516 ETMYNGHTGRKL--------------TSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 561
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
+P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 562 RQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 597
>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 1194
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 175/405 (43%), Gaps = 104/405 (25%)
Query: 1 MNQASLECGVFRSESYKA--EVDNKDIQVKSRPSD---------------DMLNFGKIQS 43
M+QA ++ G FRS YK E+ + ++ P D L F
Sbjct: 820 MSQAPIDRGCFRSVFYKNIFEIPVRVERLLRYPDSTVVGRRNGDYTKLDIDGLIFPGKNV 879
Query: 44 KSGDIVIGKYAE---------------IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
DI+IGK A I D S L+H+E+G++ V+L+SN++G +F
Sbjct: 880 LGDDIIIGKTALPRNLFNDEMDDQTNLIKKDDSTSLRHSEKGIIDSVILTSNEEGDSFTK 939
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------------- 124
V +R + +GDKF+S HGQKG +G E P
Sbjct: 940 VKMR----AIRIPQIGDKFASRHGQKGTVGMTYRQEDIPFTQEGIIPDIIVNPHAIPSRM 995
Query: 125 --AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
L+E K AC G ATPF +T +H +S L+ +G + G ++
Sbjct: 996 TIGHLIECLASKVACFKGEEGDATPFQD-----VTVEH---ISNDLHRLGYQKRGNEVMY 1047
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
W + ++IF T+YQ+ HM +DK+ R+ G Q LT +P
Sbjct: 1048 D------------GWTGR--KMDTMIFLGPTYYQRLKHMVDDKIHSRSRGPLQILTRQPT 1093
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----KCKNV-----------ANVIQRVV 286
R R GG+ FGEM+ DC+++HGA+ L ERL C V AN+ Q+
Sbjct: 1094 EGRSRHGGLRFGEMERDCMVSHGAARFLKERLFDVSDCYTVHVCRICGLICEANLRQQKY 1153
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
CR C ++ +I + +PY KLL QEL +M I + T +S
Sbjct: 1154 ---LCRGCQNSTNICQVGLPYACKLLFQEL-MAMQIAPRMITSVS 1194
>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM 1558]
Length = 1214
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 176/408 (43%), Gaps = 112/408 (27%)
Query: 1 MNQASLECGVFRSESYKA-----------------EVDNKD-IQVKSRPSD-------DM 35
MNQ+S++ G+FRS Y++ + D KD +++K SD D
Sbjct: 832 MNQSSIDRGLFRSLYYRSYTDAEKMTGMEKVETIEKPDRKDTLRMKMGSSDRYAKLDIDG 891
Query: 36 LNFGKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSN 80
L DI+IGK A I D S LK TE+G+V +V+LS+N
Sbjct: 892 LIAPATNVNGDDIIIGKTAPIPEESEELGQRTSLHTKRDVSTPLKSTEQGVVDQVMLSTN 951
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
DG F + IR + +GDKF+S HGQKG +G E P
Sbjct: 952 GDGHKFVKIRIRST----RVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIIN 1007
Query: 125 ----------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E L K G ATPF TE VS+ L G +
Sbjct: 1008 PHAIPSRMTIGHLVECLLSKLSTMTGSEGDATPF--------TELTVEKVSKFLRQRGYQ 1059
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
+ G+ ++ + L ++ I+ T+YQ+ HM +DK+ R G
Sbjct: 1060 SRGLEVMYHGHTGRKL--------------QAQIYFGPTYYQRLKHMVDDKIHARARGPL 1105
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC--KNV 278
Q LT +PV R R GG+ FGEM+ DC+I+HG + L ER+ +C +
Sbjct: 1106 QILTRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERMYDSSDGFRVHVCDQCGLMAI 1165
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
AN+ ++ +C +C ++ I + +PY AKLL QEL +M I ++
Sbjct: 1166 ANLKKQEF---HCSVCRNSTQISQIYIPYAAKLLFQELQ-AMNIAVRM 1209
>gi|15679063|ref|NP_276180.1| DNA-directed RNA polymerase subunit B' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122768|sp|O27124.1|RPOB1_METTH RecName: Full=DNA-directed RNA polymerase subunit B'
gi|2622149|gb|AAB85541.1| DNA-dependent RNA polymerase, subunit B' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 603
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 168/393 (42%), Gaps = 105/393 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDNKDIQVKSRPSD------DMLNF 38
+N+ASLE G+ RS SY+A E+ K ++ SD D +
Sbjct: 224 LNKASLERGLARSSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIIN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + SGD++IGK AE + S+ ++H E+G+V VLL+ +G
Sbjct: 284 PEAEVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEKGIVDAVLLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
A + +R+ LGDKF+S HGQKGV+G + E P
Sbjct: 344 SRLAKIRVREQ----RQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHA 399
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
Q+LE GK AC +G TPF T + + + + L G +G
Sbjct: 400 IPSRMSVGQVLEMLAGKAACMEGRRVDGTPF--------TGEDEDDIKEALRANGFETAG 451
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + I + + IF + +YQ+ HM+ DKV R+ G Q L
Sbjct: 452 VESLY-------------NGITG-ERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVL 497
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +P R R GG+ FGEM+ DCLIAHGA+ L ERL C +A V
Sbjct: 498 TRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCADCGMIA-VYD 556
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
++ YC IC ++ V Y KLL EL
Sbjct: 557 KIRDKKYCPICEDSES-FPVEVSYAFKLLLDEL 588
>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 1170
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 175/408 (42%), Gaps = 109/408 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ------VKSRPS----------------DDMLNF 38
+NQ++++ G+FRS Y+A D + Q V +P DD L
Sbjct: 792 LNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVA 851
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + D S L+ +E G+V +V+L+++ +G
Sbjct: 852 PGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEG 911
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKFSS HGQKG G E P
Sbjct: 912 FKFCKVRVRS----MRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHA 967
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
QL+E LGK A G ATPF T I SQ L+ IG + +G
Sbjct: 968 IPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAI--------SQALHKIGYQMTG 1019
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + MD + IF T+YQ+ HM +DK+ R+ G Q L
Sbjct: 1020 HEVMYNGHT-----GRRMD---------AQIFIGPTYYQRLKHMVDDKIHSRSRGPVQIL 1065
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANV 281
T +PV R R GG+ FGEM+ DC+I+HGA+ L ERL ++ +AN+
Sbjct: 1066 TRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANL 1125
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + I + +PY AKLL QEL SM I + TQ
Sbjct: 1126 KKNSFE---CRRCKNKTQISQIRMPYAAKLLFQEL-MSMSIAPRMFTQ 1169
>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1193
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 171/398 (42%), Gaps = 111/398 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ--VKSRPSDDMLNFGKIQSKSG------------ 46
MNQ+S++ G+FRS +++ D + ++ VK+ + ++ K G
Sbjct: 811 MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDG 870
Query: 47 -----------DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSN 80
DI+IGK A + D S LK TE+G+V +V+LS+N
Sbjct: 871 LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 930
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
+G F + +R + +GDKF+S HGQKG +G E P
Sbjct: 931 GEGNMFVKIRVRST----RVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIIN 986
Query: 125 ----------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E L K G ATPF TE VS++L G +
Sbjct: 987 PHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPF--------TELTVEAVSKVLRAKGYQ 1038
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
+ G ++ + L ++ ++ T+YQ+ HM +DK+ R G
Sbjct: 1039 SRGFEVLYHGHTGRKL--------------QAQVYFGPTYYQRLKHMVDDKIHARARGPL 1084
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------V 278
Q LT +PV R R GG+ FGEM+ DC+I+HG +G L ER+ + V
Sbjct: 1085 QILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAV 1144
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
AN+ ++ YC +C ++ I + +PY AKLL QEL
Sbjct: 1145 ANLKKQEF---YCSVCRNSTQISQVYIPYAAKLLFQEL 1179
>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 1247
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 176/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS +++ +D + +++K D + + G I
Sbjct: 860 MNQSSIDRGLFRSMYFRSYMDMEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIA 919
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I D S LK TE+G V +VL+++N +G
Sbjct: 920 PGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTRRDVSTPLKSTEQGTVDQVLITTNSEG 979
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V IR + +GDKF+S HGQKG +G E P
Sbjct: 980 QKFVKVRIRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHA 1035
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VSQ L G ++ G
Sbjct: 1036 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSQFLRQRGYQSRG 1087
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ I+ T+YQ+ HM +DK+ R G Q L
Sbjct: 1088 LEVMYHGHTGRKL--------------QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1133
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1134 TRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERLFEASDAYRLHVCDICGLTAIANL 1193
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + + +PY AKLL QEL SM I + T +G
Sbjct: 1194 KKQTFE---CRACKNKTECSQLYIPYAAKLLFQELQ-SMNIAARLYTTSTG 1240
>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1209
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 176/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 823 MNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIA 882
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 883 PGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEG 942
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F + +R + +GDKF+S HGQKG +G E P
Sbjct: 943 QKFVKIRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHA 998
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS L G ++ G
Sbjct: 999 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSTFLRQKGYQSRG 1050
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1051 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1096
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG +G L ERL +AN+
Sbjct: 1097 TRQPVEGRSRDGGLRFGEMERDCMISHGVAGFLKERLFEASDAYRLHVCDICGLTAIANL 1156
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T +G
Sbjct: 1157 KKQSFE---CRACKNKTACSQLYIPYAAKLLFQELQ-SMNIAARLYTVSTG 1203
>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
commune H4-8]
gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
commune H4-8]
Length = 1204
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 173/412 (41%), Gaps = 110/412 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS-------------------DDMLNFGKI 41
MNQ+S++ G+FRS Y+ D + V P+ D + + G I
Sbjct: 819 MNQSSIDRGLFRSIYYRGYTDMEKKSVGMMPTEEFEKPSRDNTLRMKHGTYDKLEDDGLI 878
Query: 42 QSKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDD 82
+G DI+IGK A I D S LK TE G++ +VLL++N+D
Sbjct: 879 APGTGVNGEDIIIGKTAPIPPDSEELGQRTKNHTRRDVSTPLKSTESGIIDQVLLTTNED 938
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
GK V +R + +GDKF+S HGQKG +G E P
Sbjct: 939 GKKLIRVRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAQGIVPDIVINPH 994
Query: 125 --------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E L K A G ATPF T+ VS+ L G +
Sbjct: 995 AIPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVEAVSKSLAAKGFQQR 1046
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q
Sbjct: 1047 GLEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQI 1092
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVAN 280
LT +PV R R GG+ FGEM+ DC+I+HG +G L ERL +AN
Sbjct: 1093 LTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFDASDAYRLHVCDICGLTAIAN 1152
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
+ ++ CR C + + +PY AKLL QEL +M I + T +G
Sbjct: 1153 LKKQSFE---CRACKNKTACSQLYIPYAAKLLFQELQ-AMNIAPRLYTTSTG 1200
>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1220
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 176/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 836 MNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIA 895
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 896 PGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEG 955
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V +R + +GDKF+S HGQKG +G E P
Sbjct: 956 QKFVKVRVRAT----RIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHA 1011
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS L G ++ G
Sbjct: 1012 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSTFLRQKGYQSRG 1063
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ I+ T+YQ+ HM +DK+ R G Q L
Sbjct: 1064 LEVMYHGHTGRKL--------------QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1109
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG +G L ERL +AN+
Sbjct: 1110 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRLHVCDICGLTAIANL 1169
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T SG
Sbjct: 1170 KKQTFE---CRSCKNKTACSQIYIPYAAKLLFQELQ-SMNIAARLYTVSSG 1216
>gi|328870070|gb|EGG18445.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1565
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 171/395 (43%), Gaps = 108/395 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+NQ++++ G+FRS Y++ D + Q +P +D L
Sbjct: 1189 LNQSAIDRGMFRSMFYRSYKDEQKKQTSLMEETFEKPDRDTTVGMRHGSYEKIDEDGLVA 1248
Query: 39 GKIQSKSGDIVIGKYA-------EIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK E+G D S ++ +E G+V +V+L+++ DG
Sbjct: 1249 PGIRVTGDDIIIGKTTPLPPQEDELGPKTRRQSKKDSSTAMRSSENGVVDQVVLTTSGDG 1308
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + + +GDKFSS HGQKG G E P
Sbjct: 1309 LKFTKVRVRS----MRTPQIGDKFSSRHGQKGTCGMAYRQEDLPWTVEGVVPDIIVNPHA 1364
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
QL+E LGK A G ATPF T I SQ L+ IG + +G
Sbjct: 1365 IPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAI--------SQALHKIGYQMTG 1416
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + MD + IF T+YQ+ HM +DK+ R+ G Q L
Sbjct: 1417 HEVMYNGHT-----GRRMD---------AQIFIGPTYYQRLKHMVDDKIHSRSRGPVQIL 1462
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANV 281
T +PV R R GG+ FGEM+ DC+I+HGA+ L ERL ++ +AN+
Sbjct: 1463 TRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANL 1522
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ CR C + I + +PY AKLL QEL
Sbjct: 1523 RKNSFE---CRRCKNKTQISQVKIPYAAKLLFQEL 1554
>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1245
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 171/398 (42%), Gaps = 111/398 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ--VKSRPSDDMLNFGKIQSKSG------------ 46
MNQ+S++ G+FRS +++ D + ++ VK+ + ++ K G
Sbjct: 863 MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDG 922
Query: 47 -----------DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSN 80
DI+IGK A + D S LK TE+G+V +V+LS+N
Sbjct: 923 LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 982
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
+G F + +R + +GDKF+S HGQKG +G E P
Sbjct: 983 GEGNMFVKIRVRST----RVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIIN 1038
Query: 125 ----------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E L K G ATPF TE VS++L G +
Sbjct: 1039 PHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPF--------TELTVEAVSKVLRAKGYQ 1090
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
+ G ++ + L ++ ++ T+YQ+ HM +DK+ R G
Sbjct: 1091 SRGFEVLYHGHTGRKL--------------QAQVYFGPTYYQRLKHMVDDKIHARARGPL 1136
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------V 278
Q LT +PV R R GG+ FGEM+ DC+I+HG +G L ER+ + V
Sbjct: 1137 QILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAV 1196
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
AN+ ++ YC +C ++ I + +PY AKLL QEL
Sbjct: 1197 ANLKKQEF---YCSVCRNSTQISQVYIPYAAKLLFQEL 1231
>gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heterostrophus]
Length = 1208
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 147/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD-NKDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF V +Q +SQLL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPFT----DVTVDQ----ISQLLEDAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKL--------------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1186
>gi|451994472|gb|EMD86942.1| hypothetical protein COCHEDRAFT_72858 [Cochliobolus heterostrophus
C5]
Length = 1208
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 147/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD-NKDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I AD S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF V +Q +SQLL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPFT----DVTVDQ----ISQLLEDAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKL--------------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1186
>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
Length = 1226
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 175/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D +++K D + + G I
Sbjct: 842 MNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIA 901
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G++ +VL+++N +G
Sbjct: 902 PGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEG 961
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F + +R + +GDKF+S HGQKG +G E P
Sbjct: 962 QKFVKIRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHA 1017
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VSQ L G ++ G
Sbjct: 1018 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSQFLRQKGYQSRG 1069
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1070 LEIMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1115
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1116 TRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANL 1175
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T +G
Sbjct: 1176 KKQTFE---CRSCKNKTACSQLYIPYAAKLLFQELQ-SMNIAARLYTVSTG 1222
>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1237
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 177/411 (43%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 853 MNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIA 912
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G++ +VL+++N +G
Sbjct: 913 PGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIIDQVLITTNAEG 972
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F + +R + +GDKF+S HGQKG +G E P
Sbjct: 973 QKFVKIRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHA 1028
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VSQ+L G ++ G
Sbjct: 1029 IPSRMTIGHLVECLLSKVATIVGNEGDATPF--------TDLTVESVSQILREQGYQSRG 1080
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1081 LEIMYHGHTGRKL--------------QAQVYFGPTYYQRLKHMVDDKIHSRARGPVQIL 1126
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1127 TRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANL 1186
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T +G
Sbjct: 1187 KKQTFE---CRSCKNKTACSQLYIPYAAKLLFQELQ-SMNIAARLYTVSTG 1233
>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
versicolor FP-101664 SS1]
Length = 1231
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 176/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 847 MNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLEDDGLIA 906
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I D S LK TE+G++ +VL+++N +G
Sbjct: 907 PGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITTNAEG 966
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F + +R + +GDKF+S HGQKG +G E P
Sbjct: 967 QKFVKIRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHA 1022
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VSQ L G ++ G
Sbjct: 1023 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSQFLRQKGYQSRG 1074
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + +++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1075 LEIMYHGHTGRK--------------IQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1120
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1121 TRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANL 1180
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T +G
Sbjct: 1181 KKQTFE---CRACRNKTACSQIYIPYAAKLLFQELQ-SMNIAARLYTTSTG 1227
>gi|312136876|ref|YP_004004213.1| DNA-directed RNA polymerase, subunit b' [Methanothermus fervidus
DSM 2088]
gi|311224595|gb|ADP77451.1| DNA-directed RNA polymerase, subunit B' [Methanothermus fervidus
DSM 2088]
Length = 604
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 147/340 (43%), Gaps = 83/340 (24%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYA---------EIGA------DHSIKLKHTERGLVLKVL 76
D ++N G + GD++IGK + E G + S+ ++ E+G+V V+
Sbjct: 278 EDGIINPG-TEVSQGDVLIGKTSPPRFLGEIDEFGTVSDRRRESSVTVRPGEKGVVDTVI 336
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------- 124
L+ + +G V +R LGDKF+S HGQKGV+G + E P
Sbjct: 337 LTESSEGNKLVKVKVRDG----RVPELGDKFASRHGQKGVIGLIVPEEDMPFTEDGLVPD 392
Query: 125 --------------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNC 169
Q+LE LGKGAC +G TPF T + + + +L
Sbjct: 393 LIINPHAIPSRMSVGQMLEMLLGKGACFEGRRIDGTPF--------TGEKEEEIKHVLKK 444
Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
G + G+ ++ + + IF + +YQ+ HM+ DKV R+
Sbjct: 445 YGFESEGLEAMYNG--------------MTGEKIEAEIFVGVVYYQKLHHMTADKVYARS 490
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK 276
G Q LT +P R R GG+ FGEM+ DCLIAHGA+ L ERL KC
Sbjct: 491 RGPVQILTRQPTEGRAREGGLRFGEMERDCLIAHGAALTLKERLLDESDKYEALVCDKCG 550
Query: 277 NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+A V ++ YC +C DI + Y KLL EL
Sbjct: 551 MLA-VYDKIHDKTYCPLCGDKSDIYPVEMSYAFKLLLDEL 589
>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1198
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 153/342 (44%), Gaps = 88/342 (25%)
Query: 47 DIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 90
DI++GK A++ + D S LKH+E G++ +V+L++ND+ + F V
Sbjct: 885 DIIVGKVAKMTSNTFNEDLRDSTAKKFKDCSTPLKHSESGIIDQVILTTNDEAQKFTKVK 944
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------------- 124
+R V +GDKF+S HGQKG G E P
Sbjct: 945 MR----AVRIPQIGDKFASRHGQKGTCGMTYRQEDLPFTREGVVPDMIVNPHAIPSRMTI 1000
Query: 125 AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 183
L+E L K + +G ATPF Q+ +SQLL+ +G + G ++ +
Sbjct: 1001 GHLIECLLSKVASLNGSEGDATPFCG--------QNVDEISQLLHELGYQRYGNEVMY-N 1051
Query: 184 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
F FE LIF TFYQ+ HM DK+ R G Q LT +P
Sbjct: 1052 GFTGRKFEV-------------LIFLGPTFYQRLKHMVGDKIHSRGRGPTQILTRQPTEG 1098
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERL----KCKNV-----------ANVIQRVVGG 288
R R GG+ FGEM+ DC+I+HGA+ L ERL C V AN+ ++
Sbjct: 1099 RSRDGGLRFGEMERDCMISHGAARFLKERLFDVSDCYRVHICQTCGLICQANLAEQRYE- 1157
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
C CN+ +I + +PY AKLL QEL +M + + T +
Sbjct: 1158 --CNNCNNTSNICQVKIPYAAKLLIQEL-MAMQLAPRLRTSI 1196
>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
Length = 1185
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 179/412 (43%), Gaps = 109/412 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ------------------VKSRPSDDMLN----- 37
M+Q+S++ G+FRS Y++ D + + SR + D L+
Sbjct: 796 MSQSSIDRGMFRSMFYRSYTDEQKTEGVLCLEQFEKPQREELGSASSRVNYDKLDVDGLV 855
Query: 38 FGKIQSKSGDIVIGK-----------YAEIGA--DHSIKLKHTERGLVLKVLLSSNDD-G 83
F + DI+IGK A+I D S +L+H E G+V +VLL++N D G
Sbjct: 856 FPAQNVEDRDIIIGKTTLVTNSDDSDQAQIAVKRDSSTRLRHNEHGVVDQVLLTTNSDTG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------------- 120
+ F + +R V +GDKF+S HGQKG +G
Sbjct: 916 QRFVQIKVR----AVRVPQIGDKFASRHGQKGTVGITYRQDDMPFTSEGVSPDLIVNPHA 971
Query: 121 ---EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T L+E LGK C G ATPF E + VS +L+ G + G
Sbjct: 972 IPSRMTIGHLIETLLGKVGCLTGDEGDATPF--------NEVNVKDVSDMLHSRGYQRHG 1023
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L +L+F T+YQ+ HM +DK+ R G Q L
Sbjct: 1024 NERLYNGHTGRPLT--------------ALVFFGPTYYQRLKHMVDDKIHSRARGPTQML 1069
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANV 281
+P+ R R GG+ FGEM+ DC+IAHG++ L E+L C++ +AN+
Sbjct: 1070 NRQPMEGRARDGGLRFGEMERDCMIAHGSANVLREKLFTQSDGYMTHICQDCGLIAIANL 1129
Query: 282 IQRVVGGPYCRIC-NSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
+ P C NS+ +I+ +PY AKLL QEL +M I + T L G
Sbjct: 1130 DSNLYRCPNQATCRNSSIGMIE--IPYAAKLLFQEL-MAMQIAPRLMTSLPG 1178
>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
disseminatus]
Length = 1241
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 177/411 (43%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD----IQVKS--RPSDDML------NFGKIQSKS--- 45
MNQ+S++ G+FRS Y++ +D + +Q++ +P+ D + KI+
Sbjct: 857 MNQSSIDRGLFRSMYYRSYMDLEKKSGALQLEEFEKPTRDTTLRMKHGTYDKIEDDGFIA 916
Query: 46 -------GDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 917 PGTNVTGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTENGIVDQVLITTNAEG 976
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V +R + +GDKF+S HGQKG +G E P
Sbjct: 977 QKFVKVRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHA 1032
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS L G ++ G
Sbjct: 1033 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVEAVSNFLRQKGYQSRG 1084
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1085 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1130
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG +G L ERL +AN+
Sbjct: 1131 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRLHVCDICGLTAIANL 1190
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T SG
Sbjct: 1191 KKQSFE---CRACKNKTACSQLYIPYAAKLLFQELQ-SMNIAARLYTVSSG 1237
>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 1228
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 175/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 842 MNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIA 901
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 902 PGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEG 961
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V +R + +GDKF+S HGQKG +G E P
Sbjct: 962 QKFVKVRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHA 1017
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS L G ++ G
Sbjct: 1018 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSTFLRQKGYQSRG 1069
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1070 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1115
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1116 TRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANL 1175
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T +G
Sbjct: 1176 KKQTFE---CRACKNKTACSQLYIPYAAKLLFQELQ-SMNIAARLYTVSTG 1222
>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 1222
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 176/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 838 MNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIA 897
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I D S LK TE+G+V +VL+++N +G
Sbjct: 898 PGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEG 957
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F + +R + +GDKF+S HGQKG +G E P
Sbjct: 958 QKFVKIRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHA 1013
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VSQ L G ++ G
Sbjct: 1014 IPSRMTIGHLVECLLSKLATLIGNEGDATPF--------TDLTVESVSQYLRQKGYQSRG 1065
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1066 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1111
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1112 TRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANL 1171
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T +G
Sbjct: 1172 KKQTFE---CRACKNKTACSQIYIPYAAKLLFQELQ-SMNIAARLYTTSTG 1218
>gi|304315185|ref|YP_003850332.1| DNA-directed RNA polymerase, subunit B' [Methanothermobacter
marburgensis str. Marburg]
gi|302588644|gb|ADL59019.1| DNA-directed RNA polymerase, subunit B' [Methanothermobacter
marburgensis str. Marburg]
Length = 603
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 171/394 (43%), Gaps = 107/394 (27%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDNKDIQ-------VKSRPSDDMLN 37
+N+ASLE G+ RS SY+A E+ K ++ + D ++N
Sbjct: 224 LNKASLERGLARSSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIIN 283
Query: 38 FGKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDD 82
+ S SGD++IGK AE + S+ ++H E+G+V VLL+ +
Sbjct: 284 PEAVVS-SGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEKGIVDAVLLTETVE 342
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G A + +R+ LGDKF+S HGQKGV+G + E P
Sbjct: 343 GSRLAKIRVREQ----RQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPH 398
Query: 125 --------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
Q+LE GK AC +G TPF T + + + + L G ++
Sbjct: 399 AIPSRMSVGQVLEMLAGKAACMEGRRVDGTPF--------TGEDERDIKKALRANGFESA 450
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G+ ++ + I + + IF + +YQ+ HM+ DKV R+ G Q
Sbjct: 451 GVESLY-------------NGITG-ERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQV 496
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +P R R GG+ FGEM+ DCLIAHGA+ L ERL +C +A +
Sbjct: 497 LTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCTECGMIA-IY 555
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
++ YC IC ++ + Y KLL EL
Sbjct: 556 DKIRDKKYCPICEDSES-FPVEISYAFKLLLDEL 588
>gi|333986471|ref|YP_004519078.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. SWAN-1]
gi|333824615|gb|AEG17277.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. SWAN-1]
Length = 603
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 169/393 (43%), Gaps = 105/393 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDN------KDIQVKSRPSDDMLNF 38
+N+ASLE G+ RS SY+A EV + +V +D +
Sbjct: 224 LNKASLERGLARSSFFRSYEASERRYPGGQEDKFEVPENIVRGYRSEEVYKHLDEDGIVN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
+++ KSGD++IGK AE + S+ ++H E G+V VLL+ +G
Sbjct: 284 PEVEVKSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEHGVVDAVLLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
A + +R GDKF+S HGQKGV+G + E P
Sbjct: 344 SKLAKIRVRDQ----RQPEFGDKFASRHGQKGVVGLIVSQENVPFTEEGVVPDLIVNPHA 399
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
Q+LE GK GA +G TPF GG + ++ + +LL G +G
Sbjct: 400 IPSRMSVGQVLEMLAGKAGAMEGKRMDGTPF----GG----KQEAEIMELLKQNGFETAG 451
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + I V + IF + FYQ+ HM+ DKV R+ G Q L
Sbjct: 452 RESLY-------------NGITG-ERVEAEIFVGVAFYQKLHHMTADKVYARSRGPVQVL 497
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +P R R GG+ FGEM+ DCLIAHGA+ L ERL +C +A +
Sbjct: 498 TRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEAIVCNECGMIA-IYD 556
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
R+ YC IC + + + Y KLL EL
Sbjct: 557 RIRDKRYCSICGDS-ETFPVEISYAFKLLLDEL 588
>gi|189197211|ref|XP_001934943.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980891|gb|EDU47517.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1208
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 146/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD-NKDIQVK-----SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y+A + K I V +P+ DD +
Sbjct: 876 MNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVA 935
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE G+V +VL ++N +G
Sbjct: 936 PGVRVSGDDIIIGKTAPIATDAAELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEG 995
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V R + +GDKF+S HGQKG +G E P
Sbjct: 996 LRFVKVRTRTT----KVPQIGDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHA 1051
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G ATPF V +Q VSQLL G + G
Sbjct: 1052 IPSRMTIAHLVECLLSKVGAITGQEGDATPFTD----VTVDQ----VSQLLENAGYQKRG 1103
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + R+ IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1104 FEIMYNGHTGKKM--------------RTQIFLGPTYYQRLRHMVDDKIHARARGPLQIL 1149
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 1150 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1186
>gi|402468839|gb|EJW03932.1| DNA-directed RNA polymerase II subunit RPB2, partial [Edhazardia
aedis USNM 41457]
Length = 594
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/397 (31%), Positives = 172/397 (43%), Gaps = 105/397 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS---------------DDMLNFGKI---- 41
MNQ+S++ G+FRS Y+ D Q SRP LN+ KI
Sbjct: 234 MNQSSIDRGLFRSFFYRTYTD----QESSRPGLIEEFGKPVRGEVARMKNLNYSKIDKDG 289
Query: 42 ------QSKSGDIVIGKYAEIGA---------DHSIKLKHTERGLVLKVLLSSNDDGKNF 86
Q D++IGK ++ D S ++ TE G+V KV+L++ D G F
Sbjct: 290 LITEGTQVLGDDVLIGKIKKMTVNNDPELSLIDGSTAMRSTETGIVDKVILTTRD-GYKF 348
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF-LEQ----------------------- 122
V +R + +GDKF+S HGQKG +G L+Q
Sbjct: 349 VKVKVRSN----RIPQMGDKFASRHGQKGTIGITLKQEDMPFTAEGIVPDIIINPHAIPS 404
Query: 123 --TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
T L+E GK GA G TPF V E VS L +G G
Sbjct: 405 RMTIGHLIECLCGKVGALKGEKGNGTPFNQK---VTVES----VSNELFKLGYNKRGFE- 456
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
+F + F E + +F TFYQ+ HM +DK+ R G Q LT +
Sbjct: 457 VFYNGFTGRKLE-------------AQLFFGPTFYQRLKHMVDDKIHARARGPVQILTRQ 503
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRI------ 293
PV R R GG+ FGEM+ DC+I+HG S L ERL V++ + V CR+
Sbjct: 504 PVEGRSRDGGLRFGEMERDCIISHGCSLFLKERL--FEVSDKYEIAV----CRLCGFMTT 557
Query: 294 -CNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CN + +K +VPY KLL QEL+ +M I L F+ +
Sbjct: 558 TCNCGGETVKIDVPYAFKLLVQELN-AMNINLNFEVE 593
>gi|40644555|emb|CAD89596.1| RNA polymerase II, second largest subunit [Myoporum insulare]
Length = 350
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 142/335 (42%), Gaps = 88/335 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 17 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 76
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 77 PGTRVSGEDVIIGKTTPINPEDAQGQAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLR 136
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 137 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIP 192
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S+ L+ G + G
Sbjct: 193 SRMTIGQLIECVMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFE 244
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 245 TMYNGHTGRRLT--------------AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 290
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
+P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 291 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 325
>gi|40644994|emb|CAD88980.1| DNA-directed RNA polymerase subunit B [Vicia sativa]
Length = 401
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 143/335 (42%), Gaps = 88/335 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 69 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYEKLDDDGLAP 128
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + DHSI L+H+E G+V +VLL++N DG
Sbjct: 129 PGTRVSGEDVIIGKTTPLSQEEAQGQAARYSKRDHSISLRHSENGIVDQVLLTTNADGLR 188
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 189 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 244
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S+ L+ G + G
Sbjct: 245 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFE 296
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 297 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 342
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
+P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 343 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 377
>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1215
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 162/395 (41%), Gaps = 108/395 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNK---------DIQVKSRPSDDMLNFGKIQS-------- 43
MNQ+S++ G+FRS ++ +D + + + +R S L G +
Sbjct: 836 MNQSSIDRGLFRSLFFRTYMDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIA 895
Query: 44 -----KSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
DI+IGK A I A D S L+ TE G+V +V+L++N DG
Sbjct: 896 PGTRVSGDDIIIGKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDG 955
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-----------TP-------- 124
F V +R + +GDKF+S HGQKG +G + TP
Sbjct: 956 LKFVKVRVRST----RVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHA 1011
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E LGK G ATPF T I SQ L G + G
Sbjct: 1012 IPSRMTIGHLIECLLGKVSTLTGNEGDATPFTDVTVEAI--------SQALQAQGYQQRG 1063
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1064 FEVMYNGFTGRKL--------------NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1109
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1110 TRQPVEGRSRDGGLRFGEMERDCMISHGVAQFLKERLFDASDAYRVHVCDICGLMAIANL 1169
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ CR C + I + ++PY KLL QEL
Sbjct: 1170 KKNNFE---CRSCKNKTRISQIHIPYACKLLFQEL 1201
>gi|302814812|ref|XP_002989089.1| hypothetical protein SELMODRAFT_129173 [Selaginella moellendorffii]
gi|300143190|gb|EFJ09883.1| hypothetical protein SELMODRAFT_129173 [Selaginella moellendorffii]
Length = 766
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 180/404 (44%), Gaps = 98/404 (24%)
Query: 2 NQASLECGVFRSESYKAEVDNKDIQVKS----RPSD------------DMLNFGKIQSK- 44
NQA+++ G+FRS + N ++Q RP + D F +I ++
Sbjct: 379 NQAAIDRGLFRSIHERTHRYNINLQSSEESFGRPVEEDGSPQQRYQHLDEDGFPEIGARL 438
Query: 45 -SGDIVIGKYAEIG----ADHSIKLKHTERGLVLKVL----LSSNDDGKNFAVVS----- 90
S VIGK ++ ++ SI LK+ E G V +V+ ++ NF S
Sbjct: 439 QSSQAVIGKTRKLKEGTVSNSSIFLKNFEEGSVKEVVRLPKIAQGSHDVNFKTASASFPH 498
Query: 91 --IRQSVNMVHSACLGDKFSSMHGQKGVLG--------------------------FLEQ 122
++ + + GDKFSSMHGQKGV+G Q
Sbjct: 499 GGVKVKIASTRAPQAGDKFSSMHGQKGVIGCCLSQEDLPFTRQGIVPDVIINPHAFPTRQ 558
Query: 123 TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK 182
T Q+LE+ GK A G+ TPF++++ + L+ G + SG
Sbjct: 559 TLGQMLESIAGKAAAMGVRVNTTPFSSASPDQL--------GAALHRCGFQKSG-----N 605
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
F L+ ++++ IF + FYQ+ + M++DK+K+R G +T +P+
Sbjct: 606 ERFYSGLYGS---------MIKAEIFVGVCFYQKLMQMADDKIKWRRIGRHDSITRQPIK 656
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGP 289
DR+++GGI+F +M+ L+AHGA+ ++ ER+ +C +A++ + P
Sbjct: 657 DRQKYGGIKFSQMERSSLVAHGAAASIQERMFHLSDPHQVEVCTRCDRMASIGR--SRAP 714
Query: 290 YCRICNSA-DDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
CR C + +PY KLL QEL+ SMGI L+ T S
Sbjct: 715 SCRFCKDKFPGFARLEIPYSCKLLVQELN-SMGIDLRLVTHSSA 757
>gi|156093703|ref|XP_001612890.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148801764|gb|EDL43163.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Plasmodium vivax]
Length = 1339
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 143/310 (46%), Gaps = 72/310 (23%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ L+ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1055 DCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRS----VRVPQIGDKFASRHGQKGTIG 1110
Query: 119 FLEQT---------------------PAQ-----LLEAALGK-GACDGLMSYATPFATST 151
+T P++ L+E GK A +G ATPF+
Sbjct: 1111 ITYRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSR-- 1168
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
IT Q +SQ L+ +G G ++ + +++S IF
Sbjct: 1169 ---ITVQE---ISQRLHSLGYEKYGNDVLYNGHNG--------------KMLKSKIFIGP 1208
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1209 TYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1268
Query: 272 RL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C N +A++ + C +CNS +I + +PY KLL QEL
Sbjct: 1269 RLFEESDAYRVHVCDNCGLCCIADINKNAYE---CTVCNSKTNISQIYIPYACKLLFQEL 1325
Query: 317 SFSMGITLKF 326
+M I K
Sbjct: 1326 -MTMAIYPKL 1334
>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
Length = 1207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 177/395 (44%), Gaps = 96/395 (24%)
Query: 1 MNQASLECGVFRS---ESYKAE---VDNKDIQVKSRPSD---------DMLNF---GKIQ 42
MNQ+S++ G+FRS +Y +E V + ++ RP+ D G +Q
Sbjct: 835 MNQSSIDRGLFRSAFNRTYVSEEKHVGSTVVERFERPNPATCVGLKRGDYTKLDADGLVQ 894
Query: 43 SKS----GDIVIGKYA--------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 90
S D++IG+ + + D S L+ +E G+V VL+SSN G FA V
Sbjct: 895 PGSRVLGDDVIIGRTSACNDEEDENLRQDCSCCLRTSENGVVDTVLISSNAKGSRFAKVK 954
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQT---------------------PAQ--- 126
+R + +GDKF+S HGQKG +G +T P++
Sbjct: 955 VRS----IRVPQIGDKFASRHGQKGTIGMTYRTEDLPFTCEGIVPDIIMNPHAVPSRMTI 1010
Query: 127 --LLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 183
L+E +GK GAC G+ ATPF+ +T QH +L C ++ +
Sbjct: 1011 GHLVECLVGKVGACCGMEGDATPFSK-----LTVQH--VAERLFECGYGKHG-------N 1056
Query: 184 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
L C F M + S IF T+YQ+ HM EDK+ R G LT +P
Sbjct: 1057 EALHCGFTGEM--------IVSKIFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEG 1108
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQRV---------VGGPYC 291
R R GG+ FGEM+ DC+I+HGA+ L ERL ++ A +V R C
Sbjct: 1109 RSRDGGLRFGEMERDCMISHGAAKMLKERLFDQSDAFRIHVCDRCGLCCVADLNRNNFEC 1168
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C++ +I + +PY KLL QEL +M I K
Sbjct: 1169 TACDNKTNISQVTIPYACKLLIQEL-MAMAIYPKL 1202
>gi|40644720|emb|CAD92662.1| RNA polymerase II [Solanum lycopersicum]
Length = 396
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 142/335 (42%), Gaps = 88/335 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 57 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAP 116
Query: 39 GKIQSKSGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 117 PGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLR 176
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 177 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 232
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S+ L+ G + G
Sbjct: 233 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFE 284
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 285 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 330
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
+P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 331 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 365
>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1193
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 162/395 (41%), Gaps = 108/395 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNK---------DIQVKSRPSDDMLNFGKIQS-------- 43
MNQ+S++ G+FRS ++ +D + + + +R S L G +
Sbjct: 814 MNQSSIDRGLFRSLFFRTYMDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIA 873
Query: 44 -----KSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
DI+IGK A I A D S L+ TE G+V +V+L++N DG
Sbjct: 874 PGTRVSGDDIIIGKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDG 933
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-----------TP-------- 124
F V +R + +GDKF+S HGQKG +G + TP
Sbjct: 934 LKFVKVRVRST----RVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHA 989
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
++E LGK G ATPF T I SQ L G + G
Sbjct: 990 IPSRMTIGHMIECLLGKVSTLTGNEGDATPFTDVTVEAI--------SQALQAQGYQQRG 1041
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1042 FEVMYNGFTGRKL--------------NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1087
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1088 TRQPVEGRSRDGGLRFGEMERDCMISHGVAQFLKERLFDASDAYRVHVCDICGLMAIANL 1147
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ CR C + I + ++PY KLL QEL
Sbjct: 1148 KKNNFE---CRSCKNKTRISQIHIPYACKLLFQEL 1179
>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
Length = 1207
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 147/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+A D + ++ +P DD +
Sbjct: 875 MNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVA 934
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE GLV +VL+++N +G
Sbjct: 935 PGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEG 994
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG--FLEQ------------------- 122
F V +R + +GDKF+S HGQKG +G +++Q
Sbjct: 995 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHA 1050
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K GL ATPF TE VS+LL G + G
Sbjct: 1051 IPSRMTIAHLIECQLSKVSTLRGLEGDATPF--------TEVTVDSVSKLLRAHGYHSRG 1102
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1103 FEIMYHGHTGRKMM--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1148
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+I+HGAS L ERL
Sbjct: 1149 TRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERL 1185
>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
mediterranea MF3/22]
Length = 1274
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 174/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDN----------------KDIQVK------SRPSDDMLNF 38
MNQ+S++ G+FRS Y+ +D +D ++ + DD L
Sbjct: 890 MNQSSIDRGLFRSLYYRTYMDQEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIA 949
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ + DI+IGK A I D S LK TE+G+V +V++++N +G
Sbjct: 950 PGVNVRGDDIIIGKTAPIPPDSEELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEG 1009
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R + +GDKF+S HGQKG +G E P
Sbjct: 1010 TKFVKIRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHA 1065
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS +L G ++ G
Sbjct: 1066 IPSRMTIGHLVECLLSKLATIVGNEGDATPF--------TDLTVDSVSSVLREKGYQSRG 1117
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1118 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHARARGPVQIL 1163
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ERL +AN+
Sbjct: 1164 TRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERLFDASDAYRLHVCDLCGLTAIANL 1223
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + I + +PY AKLL QEL +M I + T +G
Sbjct: 1224 KKQSFE---CRACKNKTSISQLYIPYAAKLLFQELQ-AMNIAARLYTVSTG 1270
>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1266
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 147/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS Y+A D N +++K + +D L
Sbjct: 882 MNQSSIDRGIFRSLFYRAYTDQEKRIGMNALESFEKPYRNDTMKLKQGTYDKLDEDGLVA 941
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + AD S L+ TE G+V +VLL++N +G
Sbjct: 942 PGVRVSGDDIIIGKTAPLPADSQDFGIRNKAHTKRDASTPLRSTENGIVDQVLLTTNSEG 1001
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V +R + +GDKF+S HGQKG +G E P
Sbjct: 1002 QKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRHEDMPFTCQGIVPDLIINPHA 1057
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GL ATPF TE VS+LL G + G
Sbjct: 1058 IPSRMTIAHLIECQLSKVSTLRGLEGDATPF--------TEVTVDSVSKLLRNHGYHSRG 1109
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1110 FEIMYHGHTGRKMM--------------AQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1155
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+I+HGA+ L ERL
Sbjct: 1156 TRQPVEGRARDGGLRFGEMERDCMISHGAASFLKERL 1192
>gi|390371063|dbj|GAB64944.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 1335
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 143/310 (46%), Gaps = 72/310 (23%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ L+ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1051 DCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRS----VRIPQIGDKFASRHGQKGTIG 1106
Query: 119 FLEQT---------------------PAQ-----LLEAALGK-GACDGLMSYATPFATST 151
+T P++ L+E GK A +G ATPF+
Sbjct: 1107 ITYRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSK-- 1164
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
IT Q +SQ L+ +G G ++ + +++S IF
Sbjct: 1165 ---ITVQE---ISQRLHNLGYEKYGNDVLYNGHNG--------------KMLKSKIFIGP 1204
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1205 TYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1264
Query: 272 RL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C N +A++ + C +CNS +I + +PY KLL QEL
Sbjct: 1265 RLFEESDAYRVHVCDNCGLCCIADINKNAYE---CTVCNSKTNISQIYIPYACKLLFQEL 1321
Query: 317 SFSMGITLKF 326
+M I K
Sbjct: 1322 -MTMAIYPKL 1330
>gi|221053005|ref|XP_002257877.1| DNA-directed RNA polymerase II second largest subunit [Plasmodium
knowlesi strain H]
gi|193807709|emb|CAQ38413.1| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium knowlesi strain H]
Length = 1371
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 143/310 (46%), Gaps = 72/310 (23%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ L+ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1087 DCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRS----VRIPQIGDKFASRHGQKGTIG 1142
Query: 119 FLEQT---------------------PAQ-----LLEAALGK-GACDGLMSYATPFATST 151
+T P++ L+E GK A +G ATPF+
Sbjct: 1143 ITYRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSK-- 1200
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
IT Q +SQ L+ +G G ++ + +++S IF
Sbjct: 1201 ---ITVQE---ISQRLHNLGYEKYGNDVLYNGHNG--------------KMLKSKIFIGP 1240
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1241 TYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1300
Query: 272 RL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C N +A++ + C +CNS +I + +PY KLL QEL
Sbjct: 1301 RLFEESDAYRVHVCDNCGLCCIADINKNAYE---CTVCNSKTNISQIYIPYACKLLFQEL 1357
Query: 317 SFSMGITLKF 326
+M I K
Sbjct: 1358 -MTMAIYPKL 1366
>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 1169
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 172/405 (42%), Gaps = 109/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPSDDML------NFGKIQSKS--- 45
+NQ++++ G+FRS Y+A D + Q +P D ++ KI
Sbjct: 794 LNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEQFEKPDRDTCAGMRHGSYEKIDEDGLVA 853
Query: 46 -------GDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
DI+IGK + D S L+ +E G+V +V+L+++ +G
Sbjct: 854 PGVRVAGDDIIIGKTTPLPPQEDDLGPKTRRHTKRDSSTALRSSENGIVDQVILTTSGEG 913
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKFSS HGQKG G E P
Sbjct: 914 FKFCKVRVRS----MRVPQIGDKFSSRHGQKGTCGMAYRQEDLPWTVEGIVPDIVVNPHA 969
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
QL+E LGK A G ATPF T I SQ L+ +G + +G
Sbjct: 970 IPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAI--------SQALHKVGYQMTG 1021
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + MD + IF T+YQ+ HM +DK+ R+ G Q L
Sbjct: 1022 HEVMYNGHT-----GRRMD---------AQIFIGPTYYQRLKHMVDDKIHSRSRGPVQIL 1067
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANV 281
T +PV R R GG+ FGEM+ DC+I+HG++ L ERL ++ +AN+
Sbjct: 1068 TRQPVEGRSRDGGLRFGEMERDCMISHGSAAFLRERLFDQSDHYRVHVCDICGLIAIANL 1127
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ CR C + I + +PY AKLL QEL SM I +
Sbjct: 1128 KKNSFE---CRRCKNKTQISQVRMPYAAKLLFQEL-MSMSIAPRM 1168
>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
Length = 1178
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 171/405 (42%), Gaps = 106/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MNQ+S++ G+FRS Y++ D + Q RPS DD L
Sbjct: 803 MNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEELERPSRDTTLGMRHGTYDKLDDDGLIC 862
Query: 39 GKIQSKSGDIVIGKYAEIGADH-------------SIKLKHTERGLVLKVLLSSNDDGKN 85
+ DI+IGK + + D S +K++E G++ +VLL++ND G
Sbjct: 863 PGTRVSGEDIIIGKTSPLPEDDPSAVSKRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLR 922
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R + +GDKFSS HGQKG +G E P
Sbjct: 923 FVKIRVRS----CRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIP 978
Query: 125 -----AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S +L+ G + G
Sbjct: 979 SRMTIGQLVECLMGKVAAMMGKEGDATPFTPVT--------VESISDMLHMCGYQKRGNE 1030
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L + IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1031 VMYNGHTGRKL--------------EAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1076
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN-----VANVIQ 283
+P+ R R GG+ FGEM+ DC+I+HGA+ L ERL C+ VAN+
Sbjct: 1077 QPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRIHVCETCGLIAVANLKN 1136
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+ C+ + +++ +PY KLL QEL SM + + T
Sbjct: 1137 QTF--ECCKNPSERTKVVQVMMPYACKLLFQEL-MSMAVAPRLVT 1178
>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
sp. DJM-731 SS1]
Length = 1258
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 167/395 (42%), Gaps = 108/395 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPSDDML------NFGKIQS----- 43
MNQ+S++ G+FRS Y++ D + I+ +P D + K+++
Sbjct: 868 MNQSSIDRGLFRSIYYRSYTDMEKSTGVVPIEEFEKPHRDTTVRMKHGTYEKLEADGLVA 927
Query: 44 -----KSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
DI+IGK A + D S LK TE G+V +VLLS+N++G
Sbjct: 928 PGIGINGEDIIIGKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLLSTNENG 987
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V IR + +GDKF+S HGQKG +G E P
Sbjct: 988 VKFVKVRIRST----RIPQIGDKFASRHGQKGTIGMTYRQEDMPFAANGITPDIVINPHA 1043
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS LL G + G
Sbjct: 1044 IPSRMTIGHLVECLLSKLATLIGNEGDATPF--------TDLTVESVSSLLRNKGYQQRG 1095
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q +
Sbjct: 1096 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHARARGPVQIM 1141
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ER+ ++AN+
Sbjct: 1142 TRQPVEGRSRDGGLRFGEMERDCMISHGVASFLKERMFDQSDAARLHVCDICGLASIANL 1201
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
++ CR C + + +PY AKLL QEL
Sbjct: 1202 KKQTFE---CRACKNKTRSTQFYIPYAAKLLLQEL 1233
>gi|429961469|gb|ELA41014.1| DNA-directed RNA polymerase II subunit RPB2 [Vittaforma corneae
ATCC 50505]
Length = 442
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 168/395 (42%), Gaps = 112/395 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS-------------------------DDM 35
MNQ++++ G+FRS Y+ D +D+ +RP D
Sbjct: 69 MNQSAIDRGLFRSFLYRTYADQEDM---ARPGVNEEFCKPDRRTCTKMGNYNYNKLGTDG 125
Query: 36 LNFGKIQSKSGDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSND 81
L F + D++IGK I D S +K TE G+V V+++ N
Sbjct: 126 LVFPGTEVVGDDVLIGKVTPILDVEKSTRENPFYIMKDSSTVMKKTEEGVVDTVIVT-NK 184
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF---------------------- 119
DG F+ V +R + +GDKF+S H QKG +G
Sbjct: 185 DGYKFSKVKVRST----RIPQVGDKFASRHAQKGTVGITLRQEDMPFTSDGLVPDIIVNP 240
Query: 120 ----LEQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
+ T LLE LGK A G ATPF+ T I+E+ +SF Q + +
Sbjct: 241 HAMPMRMTIGHLLECLLGKVSALSGEEGDATPFSEVTIEQISEKLKSFNYQSRG-LEVMH 299
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
+G+T +R+ IF T+YQ+ HM +DKV R GS Q
Sbjct: 300 NGMTGR---------------------KLRAQIFIGPTYYQRLKHMVDDKVHARARGSLQ 338
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANV 281
++ +P+ R R GG+ FGEM+ DC+I+HGAS L ERL KC +A
Sbjct: 339 VMSRQPLEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDCYTCYVCDKCGLLAIS 398
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ ++ C+ C++ I K +PY KLL QEL
Sbjct: 399 GKDIL---ECKGCSNQVAISKIQIPYAFKLLLQEL 430
>gi|148642970|ref|YP_001273483.1| DNA-directed RNA polymerase subunit B' [Methanobrevibacter smithii
ATCC 35061]
gi|261350231|ref|ZP_05975648.1| DNA-directed RNA polymerase subunit B [Methanobrevibacter smithii
DSM 2374]
gi|148551987|gb|ABQ87115.1| DNA-dependent RNA polymerase, subunit B', RpoB [Methanobrevibacter
smithii ATCC 35061]
gi|288861017|gb|EFC93315.1| DNA-directed RNA polymerase subunit B [Methanobrevibacter smithii
DSM 2374]
Length = 603
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 165/392 (42%), Gaps = 103/392 (26%)
Query: 1 MNQASLECGVFRSESYKA----------------EVDNKDIQ-VKSRPS-----DDMLNF 38
+N+ SLE G+ RS ++A EV +K+I+ +S + DD +
Sbjct: 224 INKGSLERGLARSSFFRAYDTAEKRYPGGQEDKFEVPDKNIKGYRSEDAYRHLDDDGVVN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
+ +SGD++IGK AE + S+ ++H E+G+V VLL+ +G
Sbjct: 284 PESYVESGDVLIGKTSPPRFLEEIDEFGTVAEKRRETSVTVRHGEKGIVDAVLLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
A + +R + GDKF+S HGQKGVLG + E P
Sbjct: 344 SRLAKIRVRDT----RQPEFGDKFASRHGQKGVLGLILSPEDVPFTESGVVPDLIVNPHA 399
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
Q+LE GK C +G TPF T I +Q ++ + C N G
Sbjct: 400 IPSRMSVGQVLEMVAGKAGCLEGERVDGTPFNTELEKEIKQQLKNHGFESAGCESLYN-G 458
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+T + + IF + +YQ+ HM+ DKV R+ G Q L
Sbjct: 459 VTG---------------------ERIEAEIFVGVAYYQKLHHMTTDKVYARSRGPVQVL 497
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN--VANVIQR 284
T +P R R GG+ FGEM+ DCLIAHGA+ L ERL C+N + V +
Sbjct: 498 TRQPTEGRAREGGLRFGEMERDCLIAHGAALTLKERLLDESDKYEAIVCENCGMLAVYDK 557
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
YC IC + + Y KLL EL
Sbjct: 558 NKNKKYCPICGDV-ETYPIEISYAFKLLLDEL 588
>gi|222445207|ref|ZP_03607722.1| hypothetical protein METSMIALI_00830 [Methanobrevibacter smithii
DSM 2375]
gi|222434772|gb|EEE41937.1| DNA-directed RNA polymerase subunit B [Methanobrevibacter smithii
DSM 2375]
Length = 603
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 165/392 (42%), Gaps = 103/392 (26%)
Query: 1 MNQASLECGVFRSESYKA----------------EVDNKDIQ-VKSRPS-----DDMLNF 38
+N+ SLE G+ RS ++A EV +K+I+ +S + DD +
Sbjct: 224 INKGSLERGLARSSFFRAYDTAEKRYPGGQEDKFEVPDKNIKGYRSEDAYRHLDDDGVVN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
+ +SGD++IGK AE + S+ ++H E+G+V VLL+ +G
Sbjct: 284 PESYVESGDVLIGKTSPPRFLEEIDEFGTVAEKRRETSVTVRHGEKGIVDAVLLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
A + +R + GDKF+S HGQKGVLG + E P
Sbjct: 344 SRLAKIRVRDT----RQPEFGDKFASRHGQKGVLGLILSPEDVPFTESGVVPDLIVNPHA 399
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
Q+LE GK C +G TPF T I +Q ++ + C N G
Sbjct: 400 IPSRMSVGQVLEMVAGKAGCLEGERVDGTPFNTELEKEIKQQLKNHGFESAGCESLYN-G 458
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+T + + IF + +YQ+ HM+ DKV R+ G Q L
Sbjct: 459 VTG---------------------ERIEAEIFVGVAYYQKLHHMTTDKVYARSRGPVQVL 497
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN--VANVIQR 284
T +P R R GG+ FGEM+ DCLIAHGA+ L ERL C+N + V +
Sbjct: 498 TRQPTEGRAREGGLRFGEMERDCLIAHGAALTLKERLLDESDKYEAIVCENCGMLAVYDK 557
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
YC IC + + Y KLL EL
Sbjct: 558 NKNKKYCPICGDV-ETYPIEISYAFKLLLDEL 588
>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
C-169]
Length = 1170
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 175/387 (45%), Gaps = 76/387 (19%)
Query: 1 MNQASLECGVFRS---ESYKAE-------------VDNKDIQVKSRP------SDDMLNF 38
MNQ+S++ G FRS +Y+AE V ++ + V R DD +
Sbjct: 797 MNQSSIDRGFFRSMFFRTYRAEEKKQGSLVQEVIEVPDRSVTVAMRHGTYDKLDDDGIAP 856
Query: 39 GKIQSKSGDIVIGKYAEIG------------ADHSIKLKHTERGLVLKVLLSSNDDGKNF 86
+ D++IGK + + D S L+++E G++ +V++++N +G+ F
Sbjct: 857 PGTRVSGEDVIIGKTSPLADEQPGVAQRFSKKDVSTSLRNSESGMIDQVMVTTNAEGQRF 916
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM--SYA 144
+ +R + +GDKF+S HGQKG +G T Q +G L+ +A
Sbjct: 917 VKIRVRS----IRIPQVGDKFASRHGQKGTIGM---TYTQEDMPWTSEGIVPDLIINPHA 969
Query: 145 TPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFICL 202
P + G ++ ++ +S++ +G F + L C + +
Sbjct: 970 IPSRMTIGHLV----EALMSKVAALVGKEGDATPFAEVTVDNISAALHTCGYQSRGWETM 1025
Query: 203 --------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 254
+++ IF T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGE
Sbjct: 1026 YNGHTGRRLQAQIFLNPTYYQRLKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGE 1085
Query: 255 MKCDCLIAHGASGNLHERL-------------KCK--NVANVIQRVVGGPYCRICNSADD 299
M+ DC+I+HG++ L ERL +C VAN+ + +C C +
Sbjct: 1086 MERDCIISHGSAAFLKERLFDQSDAYRVHVCDRCGLFAVANLKKNQF---HCPACKNTTG 1142
Query: 300 IIKANVPYGAKLLSQELSFSMGITLKF 326
I++ ++PY KLL QEL +M I +
Sbjct: 1143 IVQVHMPYACKLLFQEL-MAMAIAPRM 1168
>gi|133460|sp|P09845.2|RPOB1_METTW RecName: Full=DNA-directed RNA polymerase subunit B'
gi|809726|emb|CAA30837.1| unnamed protein product [Methanothermobacter thermautotrophicus]
Length = 604
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 170/394 (43%), Gaps = 106/394 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDNKDIQ-------VKSRPSDDMLN 37
+N+ASLE G+ RS SY+A E+ K ++ + D ++N
Sbjct: 224 LNKASLERGLARSSFFRSYEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIIN 283
Query: 38 FGKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDD 82
+ + SGD++IGK AE + S+ ++H E G+V VLL+ +
Sbjct: 284 -PETEVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEEGIVDAVLLTETVE 342
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G A + +R+ +GDKF+S HGQKGV+G + E P
Sbjct: 343 GSRLAKIRVREQR---QPEFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPH 399
Query: 125 --------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
Q+LE GK AC +G TPF T + + + + L G ++
Sbjct: 400 AIPSRMSVGQVLEMLAGKAACMEGRRVDGTPF--------TGEEEKDLKEALKANGFESA 451
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G+ ++ + I + + IF + +YQ+ HM+ D++ R+ G Q
Sbjct: 452 GVETLY-------------NGITG-ERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQV 497
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +P R R GG+ FGEM+ DCLIAHGA+ L ERL +C +A +
Sbjct: 498 LTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCAECGMIA-IY 556
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
++ YC IC ++ + Y KLL EL
Sbjct: 557 DKIRDKKYCPICEDSES-FPVEISYAFKLLLDEL 589
>gi|327311708|ref|YP_004338605.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
768-20]
gi|326948187|gb|AEA13293.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
768-20]
Length = 1127
Score = 120 bits (302), Expect = 7e-25, Method: Composition-based stats.
Identities = 117/402 (29%), Positives = 170/402 (42%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYK-----------AEVDNKDI-----------QVKSRPSDDMLNF 38
MN++S++ G+FRS Y+ E D ++ + S +D +
Sbjct: 747 MNKSSVDRGLFRSNFYRTYETEEQKYPGGEEDRIEVPDSSARGYRGPEAYSHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGKYA--------------EIGADHSIKLKHTERGLVLKVLLSSNDDGK 84
++ G+++IGK A + D SI ++ ERG+V +V+++ + +G
Sbjct: 807 PEVYVTGGEVIIGKTAPPRFYMTLETEKILKERRDASIPVRRGERGIVDRVVITESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G L
Sbjct: 867 KLVKVRLRE----LRVPELGDKFASRHGQKGVIGMLLRQEDMPFTEDGIVPDIIVNPHAM 922
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T QLLE+ GK GA G + ATPF T G + E LL +G R G
Sbjct: 923 PSRMTVGQLLESIAGKAGALTGQLIDATPFEGVTEGELRE--------LLMKLGFRWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF I +YQ+ HM DK+ R+ G Q LT
Sbjct: 975 EVMYSG-------------ITGEKLVAD-IFIGIVYYQKLHHMVADKIHARSRGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRV 285
+P R R GG+ GEM+ D LIAHGAS L+ER+ C+ + +
Sbjct: 1021 RQPTEGRSREGGLRLGEMERDVLIAHGASALLYERMVESSDKYTMYVCELCGLPAYLDAK 1080
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I + K VPY KLL QEL ++GI K +
Sbjct: 1081 TNRPKCPIHGESGQFAKVVVPYAFKLLLQEL-IALGIYPKLE 1121
>gi|258596921|ref|XP_001349662.2| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium falciparum 3D7]
gi|254688481|gb|AAC71932.3| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium falciparum 3D7]
Length = 1340
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 142/310 (45%), Gaps = 72/310 (23%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ L+ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1056 DCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRS----VRIPQIGDKFASRHGQKGTIG 1111
Query: 119 FLEQT---------------------PAQ-----LLEAALGK-GACDGLMSYATPFATST 151
+T P++ L+E GK A +G ATPF+
Sbjct: 1112 ITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSK-- 1169
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
IT Q +SQ L+ +G G ++ + L +S IF
Sbjct: 1170 ---ITVQE---ISQKLHNLGYEKYGNEMLYNGHNGRML--------------KSKIFIGP 1209
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1210 TYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1269
Query: 272 RL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C N +A++ + C +CNS +I + +PY KLL QEL
Sbjct: 1270 RLFEESDAYRVHVCDNCGLCCIADINKNAYE---CTVCNSKTNISQIYLPYACKLLFQEL 1326
Query: 317 SFSMGITLKF 326
+M I K
Sbjct: 1327 -MTMAIYPKL 1335
>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1184
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 139/309 (44%), Gaps = 66/309 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S ++ TE G+V KV+L++N+ G F V IR V +GDKFSS HGQKG +G
Sbjct: 900 DASTSMRSTETGVVDKVMLAANEAGARFVKVRIRS----VRVPQVGDKFSSRHGQKGTVG 955
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
E P QL+E GK A G ATPF T
Sbjct: 956 ITYGQEDLPFNVDGIVPDIIINPHAIPSRMTIGQLIECLQGKVSAIAGREGDATPFTWVT 1015
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
I++Q L +G ++ G ++ + L + IF
Sbjct: 1016 VDEISQQ--------LKTLGYQSRGWELMYNGFTGRPL--------------EAHIFIGP 1053
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +PV R R GG+ FGEM+ DC+I+HGA+ L E
Sbjct: 1054 TYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRAREGGLRFGEMERDCMISHGAAFFLKE 1113
Query: 272 RLKCK------NVANVIQRVVGGPY------CRICNSADDIIKANVPYGAKLLSQELSFS 319
RL + +V N+ + CR C + +I + +PY KLL QEL +
Sbjct: 1114 RLMDESDAYRIHVCNLCGLIAIADLKRNTFECRSCRNKTEISQVFIPYACKLLFQEL-MA 1172
Query: 320 MGITLKFDT 328
MGI + T
Sbjct: 1173 MGIAPRIVT 1181
>gi|302804103|ref|XP_002983804.1| hypothetical protein SELMODRAFT_118653 [Selaginella moellendorffii]
gi|300148641|gb|EFJ15300.1| hypothetical protein SELMODRAFT_118653 [Selaginella moellendorffii]
Length = 762
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 179/404 (44%), Gaps = 98/404 (24%)
Query: 2 NQASLECGVFRSESYKAEVDNKDIQVKS----RPSD------------DMLNFGKIQSK- 44
NQA+++ G+FRS + N ++Q RP + D F +I ++
Sbjct: 375 NQAAIDRGLFRSIHERTHRYNINLQSSEESFGRPVEEDGSPQQRYQHLDEDGFPEIGARL 434
Query: 45 -SGDIVIGKYAEIG----ADHSIKLKHTERGLV------LKVLLSSNDDGKNFAVVS--- 90
S VIGK ++ ++ SI LK+ E G V K+ S+D A S
Sbjct: 435 QSSQAVIGKTRKLKEGTVSNSSIFLKNFEEGSVKEVVRLPKIAQGSHDVNVKTASASFPH 494
Query: 91 --IRQSVNMVHSACLGDKFSSMHGQKGVLG--------------------------FLEQ 122
++ + + GDKFSSMHGQKGV+G Q
Sbjct: 495 GGVKVKIASTRAPQAGDKFSSMHGQKGVIGCCLSQEDLPFTRQGIVPDVIINPHAFPTRQ 554
Query: 123 TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK 182
T Q+LE+ GK A G+ TPF++++ + L+ G + SG
Sbjct: 555 TLGQMLESIAGKAAAMGVRVNTTPFSSASPDQL--------GAALHRCGFQKSG-----N 601
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
F L+ ++++ IF + FYQ+ + M++DK+K+R G +T +P+
Sbjct: 602 ERFYSGLYGS---------MIKAEIFVGVCFYQKLMQMADDKIKWRRIGRHDSITRQPIK 652
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGP 289
DR+++GGI+F +M+ L+AHGA+ ++ ER+ +C +A++ + P
Sbjct: 653 DRQKYGGIKFSQMERSSLVAHGAAASIQERMFHLSDPHQVEVCTRCDRMASIGR--SRAP 710
Query: 290 YCRICNSA-DDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
CR C + +PY KLL QEL+ SMGI L+ T S
Sbjct: 711 SCRFCKDKFPGFARLEIPYSCKLLVQELN-SMGIDLRLVTDSSA 753
>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1222
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 174/411 (42%), Gaps = 109/411 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
+NQ+S++ G+FRS Y++ +D +++K D + + G I
Sbjct: 838 VNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIA 897
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 898 PGTNVTGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEG 957
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V +R + +GDKF+S HGQKG +G E P
Sbjct: 958 QKFVKVRVRST----RIPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGIVPDLIINPHA 1013
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS L G ++ G
Sbjct: 1014 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVEGVSTFLRQRGYQSRG 1065
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1066 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1111
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG +G L ERL +AN+
Sbjct: 1112 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFDASDAYRLHVCDICGLTAIANL 1171
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332
++ CR C + + +PY AKLL QEL SM I + T SG
Sbjct: 1172 KKQSFE---CRACKNKTACSQLYIPYAAKLLFQELQ-SMNIAARLYTVSSG 1218
>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
Length = 1177
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 179/405 (44%), Gaps = 101/405 (24%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPSDDML------NFGKI------- 41
MNQ+S++ G+FRS ++ V + I+ P+ + + N+G +
Sbjct: 800 MNQSSIDRGLFRSVFFRTYVSEEKQVGSNLIEAFELPNPEEVSGLRFGNYGNLDLDGLIE 859
Query: 42 ---QSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ DI+IGK I D S+ ++ +E G+V +VLLS+N G
Sbjct: 860 PGNRVLGDDIIIGKVGPINPEDRDTRIQKLTKRDCSVGIRTSEHGVVDEVLLSTNSKGVK 919
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQT---------------------P 124
FA V +R ++ + H +GDKF+S HGQKG +G +T P
Sbjct: 920 FAKVKVR-TIRIPH---VGDKFASRHGQKGTIGITYRTEDMPFTQDGIIPDIIMNPHAIP 975
Query: 125 AQ-----LLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
++ L+E LGK A GL ATPF T + E +S L+ G + +G
Sbjct: 976 SRMTIGHLIECLLGKACAIQGLEGDATPFTKIT---VEE-----ISSRLHSSGFQKNGNE 1027
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L S IF T+YQ+ HM +DK+ R G+ LT
Sbjct: 1028 VMYNGHTGKRL--------------ESRIFIGPTYYQRLKHMVDDKIHARARGAVTMLTR 1073
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGG 288
+P R R GG+ FGEM+ DC+I+HGA+ L ERL C+ + +G
Sbjct: 1074 QPREGRAREGGLRFGEMERDCMISHGAAKMLKERLFDQCDAYRVHVCEMCGLICIADLGK 1133
Query: 289 PY--CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ C CN+ I + +PY KLL QEL +M I + Q +
Sbjct: 1134 QHFECNACNNKSRISQICLPYACKLLLQEL-MAMSIYPRLHLQTA 1177
>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
Length = 1197
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 172/405 (42%), Gaps = 109/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD-NKDIQVKS-----RPSDDM---LNFGKIQS-------- 43
MNQ++++ G+FRS Y+ D K + V + +P+ D L G +
Sbjct: 822 MNQSAIDRGLFRSLYYRTFQDMEKKVGVITMEEFEKPTRDTAIRLKHGTYEKLDVDGLVP 881
Query: 44 -----KSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
DI+IGK A + D S +K TE G++ +VL+++N +G
Sbjct: 882 PGTRVSGEDIIIGKTAPLPPDSDELGMRSKMHTKKDVSTPMKSTESGIIDQVLITTNGEG 941
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 942 AKFVKVRVRST----RVPQVGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDIIINPHA 997
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS +L +G ++ G
Sbjct: 998 IPSRMTIGHLVECLLSKVATLSGQEGDATPF--------TDLTVKGVSDILFSLGFQSRG 1049
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 1050 LEVMYNGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1095
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK---------------CKNVANV 281
T +PV R R GG+ FGEM+ DC+I+HG + L ER+ VAN+
Sbjct: 1096 TRQPVEGRSRDGGLRFGEMERDCMISHGMANFLKERMYDASDAYRLHICDLCGLTAVANL 1155
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ CR C + I + ++PY AKLL QEL SMGI +
Sbjct: 1156 RKSTFE---CRACRNRSAISQIHIPYAAKLLFQEL-MSMGIASRL 1196
>gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit B [Pyrobaculum aerophilum str.
IM2]
gi|18159514|gb|AAL62934.1| DNA-directed RNA polymerase subunit B (rpoB) [Pyrobaculum aerophilum
str. IM2]
Length = 1127
Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats.
Identities = 121/402 (30%), Positives = 171/402 (42%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKA--------------EVDNKDIQVK--------SRPSDDMLNF 38
+N+AS+E G+FRS Y+ ++ D VK S +D +
Sbjct: 747 LNKASVERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVKGYRGPEAYSHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGK------YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ S +++IGK Y + A D S+ ++ E+G+V KV+++ + +G
Sbjct: 807 PEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASVAVRRGEKGIVDKVIITESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G L
Sbjct: 867 KLVKVRLRE----LRVPELGDKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHAL 922
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T AQLLE+ GK GA G + ATPF GV E + +LL +G + G
Sbjct: 923 PSRMTVAQLLESIAGKLGASTGQLIDATPFE----GVKEED----LRKLLLKLGYKWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF I +YQ+ HM DK+ R G Q LT
Sbjct: 975 EVMYSG-------------ITGERLVAD-IFIGIVYYQKLHHMVADKIHARARGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRV 285
+P R R GG+ GEM+ D LIAHGAS LHERL C+ + +
Sbjct: 1021 RQPTEGRSREGGLRLGEMERDVLIAHGASALLHERLVESSDKYVMYVCELCGLPAYLDAK 1080
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I K VPY KLL QEL ++GI K +
Sbjct: 1081 SNKPKCPIHGDTGQFAKVVVPYAFKLLLQEL-IALGIYPKLE 1121
>gi|410722154|ref|ZP_11361466.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp.
Maddingley MBC34]
gi|410597473|gb|EKQ52086.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp.
Maddingley MBC34]
Length = 603
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 164/393 (41%), Gaps = 105/393 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDN------KDIQVKSRPSDDMLNF 38
+N+AS+E G+ RS SY+A EV + +V +D +
Sbjct: 224 LNKASIERGLARSSFFRSYEASERRYPGGQEDKFEVPENMVRGYRSEEVYRNLDEDGIVN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
++ KSGD++IGK AE + S+ ++H E G+V V+L+ +G
Sbjct: 284 PEVTVKSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEHGVVDAVMLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
A + +R GDKF+S HGQKGV+G + E P
Sbjct: 344 SKLAKIRVRDQ----RQPEFGDKFASRHGQKGVVGLIVSQENMPFTAEGVVPDLIVNPHA 399
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
Q+LE GK C +G TPF+ + + + LL G +G
Sbjct: 400 IPSRMSVGQVLEMLAGKAGCMEGHRMDGTPFSGN--------QEDEIMDLLRTNGFETAG 451
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + I + + IF + FYQ+ HM+ DKV R+ G Q L
Sbjct: 452 RESLY-------------NGITG-ERIEAEIFVGVAFYQKLHHMTSDKVYARSRGPVQVL 497
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +P R R GG+ FGEM+ DCLIAHGA+ L ERL +C VA +
Sbjct: 498 TRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEAIVCGECGMVA-IYD 556
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
R+ YC IC +D + Y KLL EL
Sbjct: 557 RIRDKRYCPICGDSDS-FPVEISYAFKLLLDEL 588
>gi|374327622|ref|YP_005085822.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
gi|356642891|gb|AET33570.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
Length = 1127
Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats.
Identities = 121/402 (30%), Positives = 172/402 (42%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKA--------------EVDNKDIQVK--------SRPSDDMLNF 38
+N+AS+E G+FRS Y+ ++ D VK S +D +
Sbjct: 747 LNKASVERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVKGYRGPEAYSHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGK------YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ S +++IGK Y + A D S+ ++ ERG+V +V+++ + +G
Sbjct: 807 PEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASVAVRRGERGIVDRVIVTESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGVLG L
Sbjct: 867 KLVKVRLRE----LRIPELGDKFASRHGQKGVLGMLLRHEDMPFTEDGIVPDIIVNPHAL 922
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T AQLLE+ GK GA G + ATPF GV E + +LL +G + G
Sbjct: 923 PSRMTVAQLLESMAGKVGASTGHLVDATPFE----GVKEED----LRKLLLKLGYKWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF + +YQ+ HM DK+ R G Q LT
Sbjct: 975 EVMYSG-------------ITGERLVAD-IFIGVVYYQKLHHMVADKIHARARGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRV 285
+P R R GG+ GEM+ D LIAHGAS L+ERL C+ + +
Sbjct: 1021 RQPTEGRAREGGLRLGEMERDVLIAHGASALLYERLVESSDKYVMYVCELCGLPAYLDAK 1080
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I A K VPY KLL QEL ++GI K +
Sbjct: 1081 SNKPRCPIHGDAGQFAKVVVPYAFKLLLQEL-IALGIYPKIE 1121
>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
Length = 1190
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 165/402 (41%), Gaps = 100/402 (24%)
Query: 1 MNQASLECGVFRSESYKAEVDN------KDIQVKSRPS----------------DDMLNF 38
MN +S++ G+FRS Y++ D ++ + +P+ DD +
Sbjct: 815 MNSSSIDRGMFRSIFYRSYRDQESSREARNEETIEKPTRQICQGMRNAVYHKLDDDGIVS 874
Query: 39 GKIQSKSGDIVIGKYAEI-------------GADHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + D S L+ +E G+V +V+LS N DG
Sbjct: 875 PGTRVSGDDVIIGKTIMLEDTDDSSTTKRSSKKDASTFLRASETGIVDQVMLSVNADGNK 934
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R + +GDKF+S HGQKG +G + E P
Sbjct: 935 FVKVRVRS----IRIPQIGDKFASRHGQKGTIGMIYRQEDMPFTCEGITPDIIINPHAIP 990
Query: 125 -----AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
L+E GK A G + ATPF S + VS LL G G
Sbjct: 991 SRMTIGHLIECLQGKVSANRGEIGDATPFNDSV-------NVQKVSSLLQEYGYHLRGNE 1043
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L + +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1044 VMYSGFTGRKL--------------NTQVFIGPTYYQRLKHMVDDKIHSRARGPLQMMAR 1089
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRVV 286
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL CK + +
Sbjct: 1090 QPMEGRSRDGGLRFGEMERDCQIAHGAAHFLKERLFEVSDPYTVYVCKICGIIAIANSRT 1149
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
G CR C + I + N+PY KLL QEL+ SM I + T
Sbjct: 1150 GHYECRTCRNKTKISRVNIPYACKLLFQELT-SMCIAPRMKT 1190
>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
SJ-2008]
Length = 1141
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 170/402 (42%), Gaps = 113/402 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGK----- 40
MNQ++++ G+FRS Y+ D + + SRP + LN+ K
Sbjct: 767 MNQSAIDRGLFRSFFYRTYTDQESM---SRPGVNEEFCKPNRGSVLRMKNLNYNKLDEDG 823
Query: 41 -----IQSKSGDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSND 81
++ D++IGK I D S ++ TE G+V V+++ N
Sbjct: 824 LISPGVRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NK 882
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 124
DG F+ V IR +GDKF+S H QKG +G E P
Sbjct: 883 DGYKFSKVKIRSG----RIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINP 938
Query: 125 ---------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
L+E LGK A G ATPF+ G + E +S L G +
Sbjct: 939 HAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFS---GMSVNE-----ISTRLKSYGFQQ 990
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
G+ ++ L R+ IF T+YQ+ HM +DK+ R G Q
Sbjct: 991 RGLEVMYNGMTGRKL--------------RAQIFFGPTYYQRLKHMVDDKIHARARGPLQ 1036
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------KCK--NVANVIQRV 285
LT +PV R R GG+ FGEM+ DC+I+HGAS L ERL C N+ ++
Sbjct: 1037 ILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCNLCGLL--A 1094
Query: 286 VGGP---YCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
+GG C+ CN+ ++ +PY KLL QEL MG+ +
Sbjct: 1095 MGGTKVNECKGCNNTTNVSMVEIPYAFKLLIQEL---MGMNI 1133
>gi|325960116|ref|YP_004291582.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. AL-21]
gi|325331548|gb|ADZ10610.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. AL-21]
Length = 603
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 167/393 (42%), Gaps = 105/393 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDN------KDIQVKSRPSDDMLNF 38
+N+AS+E G+ RS SY+A EV + +V +D +
Sbjct: 224 LNKASIERGLARSSFFRSYEASERRYPGGQEDKFEVPENIVRGYRSEEVYRHLDEDGIVN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
+++ KSGD++IGK AE + S+ ++H E G+V VLL+ +G
Sbjct: 284 PEVEVKSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEHGVVDAVLLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
A + +R GDKF+S HGQKGV+G + E P
Sbjct: 344 SKLAKIRVRDQ----RQPEFGDKFASRHGQKGVVGLIVSQENMPFTEVGVVPDLIINPHA 399
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
Q++E GK G +G TPF GG + ++ + +LL G +G
Sbjct: 400 IPSRMSVGQVIEMLAGKAGTMEGKRMDGTPF----GG----KQEAEIMELLKQNGFETAG 451
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + I + + IF + FYQ+ HM+ DKV R+ G Q L
Sbjct: 452 RESLY-------------NGITG-ERIEAEIFVGVAFYQKLHHMTADKVYARSRGPVQVL 497
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +P R R GG+ FGEM+ DCLIAHGA+ L ERL C +A +
Sbjct: 498 TRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCQDCGMIA-IYD 556
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
R+ YC IC + + + Y KLL EL
Sbjct: 557 RIRDKKYCAICGES-ETFPVEISYAFKLLLDEL 588
>gi|408381651|ref|ZP_11179199.1| DNA-directed RNA polymerase subunit B' [Methanobacterium formicicum
DSM 3637]
gi|407815582|gb|EKF86152.1| DNA-directed RNA polymerase subunit B' [Methanobacterium formicicum
DSM 3637]
Length = 603
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 164/393 (41%), Gaps = 105/393 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDNKDI------QVKSRPSDDMLNF 38
+N+AS+E G+ RS SY+A EV + +V +D +
Sbjct: 224 LNKASIERGLARSSFFRSYEASERRYPGGQEDKFEVPENMVRGYRSEEVYRNLDEDGIVN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
++ KSGD++IGK AE + S+ ++H E G+V V+L+ +G
Sbjct: 284 PEVNVKSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEHGVVDAVMLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
A + +R GDKF+S HGQKGV+G + E P
Sbjct: 344 SKLAKIRVRDQ----RQPEFGDKFASRHGQKGVVGLIVSPENMPFTAEGVVPDLIVNPHA 399
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
Q+LE GK C +G TPF+ + Q + + L RN+G
Sbjct: 400 IPSRMSVGQVLEMLAGKAGCMEGHRMDGTPFSGN-------QEEEIMDLL------RNNG 446
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
F E + I + + IF + FYQ+ HM+ DKV R+ G Q L
Sbjct: 447 --------FETAGRESLYNGITG-ERIEAEIFVGVAFYQKLHHMTSDKVYARSRGPVQVL 497
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +P R R GG+ FGEM+ DCLIAHGA+ L ERL C VA +
Sbjct: 498 TRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEAIICGDCGMVA-IYD 556
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
R+ YC IC +D + Y KLL EL
Sbjct: 557 RIRDKRYCPICGDSDS-YPVEISYAFKLLLDEL 588
>gi|67810752|gb|AAY82003.1| RNA polymerase II second largest subunit [Psilotum nudum]
Length = 614
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 148/347 (42%), Gaps = 88/347 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E + VK RP+ DD L
Sbjct: 294 MNQSSIDRGFFRSIFYRSYRDEEXKQGTLVKEEFERPNRETXTNMRHGSYDKLDDDGLTP 353
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + D S L+ +E G++ +VLL++N DG
Sbjct: 354 PGTRVSGEDVIIGKTTPLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLR 413
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R + +GDKFSS HGQKG +G E P
Sbjct: 414 FVKIRVRS----IRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDIIVNPHAIP 469
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 470 SRMTIGQLIECIMGKVAAHMGREGDATPFTDVTVDSI--------SKALHKCGYQMRGFE 521
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 522 TMYNGHTXRRL--------------NAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTR 567
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL ++ A + RV
Sbjct: 568 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHRV 614
>gi|82914537|ref|XP_728803.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
17XNL]
gi|23485337|gb|EAA20368.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii yoelii]
Length = 1312
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 139/307 (45%), Gaps = 66/307 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ ++ E G++ V+LSSN G FA V +R V +GDKF+S HGQKG +G
Sbjct: 1028 DCSLSIRSNENGVIDTVMLSSNSRGNKFAKVKVRS----VRIPQIGDKFASRHGQKGTIG 1083
Query: 119 F---LEQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
+E P L+E GK A +G ATPF+
Sbjct: 1084 ITYRMEDMPFTSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSK-- 1141
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
IT Q +S+ L+ +G G ++ + ++ S IF
Sbjct: 1142 ---ITVQE---ISERLHRLGYEKYGNDILYNGHNG--------------KMLTSKIFIGP 1181
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
TFYQ+ HM EDK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG++ L E
Sbjct: 1182 TFYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKE 1241
Query: 272 RLKCKNVANVIQ-----------RVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFS 319
RL ++ A + + Y C ICNS +I + +PY KLL QEL +
Sbjct: 1242 RLFEESDAYRVHVCDICGLCCVADINKNAYECTICNSKTNISQIYIPYACKLLFQEL-MT 1300
Query: 320 MGITLKF 326
M I K
Sbjct: 1301 MAIYPKL 1307
>gi|84490161|ref|YP_448393.1| DNA-directed RNA polymerase subunit B' [Methanosphaera stadtmanae
DSM 3091]
gi|84373480|gb|ABC57750.1| RpoB1 [Methanosphaera stadtmanae DSM 3091]
Length = 603
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 162/382 (42%), Gaps = 83/382 (21%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDN-----------KDIQVKSRPSDDMLNF 38
MN+A+LE G+ RS SY+A + D+ + +V +D L
Sbjct: 224 MNKAALERGLGRSSFFRSYEASERRYPGGQEDHFEYPESMVRGYRSEEVYKHLDEDGLIN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
++ SGD++IGK AE + S+ ++H E G+V KV+L+ +G
Sbjct: 284 PEVPVTSGDVLIGKTSPPRFLEDVDEFGTVAERRRETSVTVRHGEHGIVDKVMLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGL 140
A V +R GDKF+S HGQKGVLG + E P G C L
Sbjct: 344 SKLAKVKVRDH----RQPEYGDKFASRHGQKGVLGLIVPQENMPFN------ENGMCPDL 393
Query: 141 M--SYATPFATSTGGVITEQHQSFVSQLLNCI-GARNSGITFI------FKHYFLFCLFE 191
M +A P S G +I ++ C+ G R G F K FE
Sbjct: 394 MINPHAIPSRMSIGQII-----EMLAGKAGCMEGHRIDGTPFTGVPEDEIKRLLKENGFE 448
Query: 192 CPMDWIAFICLV----RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+ + ++ IF + +YQ+ HM+ DKV R+ G Q LT +P R R
Sbjct: 449 THGREQLYNGITGERFKAEIFVGVAYYQKLHHMTSDKVYARSRGPVQVLTRQPTEGRARE 508
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRIC 294
GG+ FGEM+ DCLIAHGA+ L ERL C +A V ++ YC IC
Sbjct: 509 GGLRFGEMERDCLIAHGAALALKERLLDESDKYEALLCGNCGRLA-VRDKIRDRTYCAIC 567
Query: 295 NSADDIIKANVPYGAKLLSQEL 316
+ + Y KLL EL
Sbjct: 568 GET-ETFPIEISYAFKLLLDEL 588
>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
Length = 1138
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 174/405 (42%), Gaps = 111/405 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ--------------VKSRPS----DDMLNFGKI- 41
MNQAS++ G+FRS ++ D + ++ V RP D + N G +
Sbjct: 768 MNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKICKIERSVIFRPKKNNYDILGNDGIVC 827
Query: 42 ---QSKSGDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSNDDGK 84
Q D++IGK I D S ++ TE+G + KV++++ D G
Sbjct: 828 PGTQVYGDDVIIGKMTPILDVEKSTPGNPFYLFKDTSTLIRKTEQGNIDKVIVTTKD-GY 886
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF-LEQ--------------------- 122
F V +R + +GDKF+S H QKGV+G L+Q
Sbjct: 887 KFTKVKVRS----MRIPQMGDKFASRHAQKGVVGITLKQEDMPFTSDGLIPDVIINPHAI 942
Query: 123 ----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T L EA LGK +G+ ATPFA Q +S+ L G + G
Sbjct: 943 PSRMTIGHLFEALLGKLTTLNGIEGDATPFANKP------QTIDEISKELAKYGYQKRG- 995
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
FE M A ++S IF T+YQ+ HM +DK+ R G Q +T
Sbjct: 996 ------------FEI-MHSGATGYKLKSQIFIGPTYYQRLKHMVDDKLHARARGPLQIMT 1042
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNS- 296
+PV R R GG+ FGEM+ DC+I+HGAS L ERL +V++V C +C++
Sbjct: 1043 RQPVEGRSREGGLRFGEMERDCIISHGASAFLKERL--MDVSDVYT-------CGVCDNC 1093
Query: 297 ------------ADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
I N+PY KLL QEL M I ++ TQ
Sbjct: 1094 GLICNNNCTGCNNSTISNINIPYAFKLLIQELQ-GMNIFMRIQTQ 1137
>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
Length = 1140
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 169/402 (42%), Gaps = 113/402 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGKIQSKS 45
MNQ++++ G+FRS Y+ D + + SRP + LN+ K+
Sbjct: 766 MNQSAIDRGLFRSFFYRTYTDQESM---SRPGVNEEFCKPSRGTVLRMKNLNYNKLDEDG 822
Query: 46 ----------GDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSND 81
D++IGK I D S ++ TE G+V V+++ N
Sbjct: 823 LISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NK 881
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 124
DG F+ + +R +GDKF+S H QKG +G E P
Sbjct: 882 DGYKFSKIKVRSG----RIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINP 937
Query: 125 ---------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
L+E LGK A G ATPF+ T I+ + +S+ G +
Sbjct: 938 HAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSDMTVNEISAKLKSY--------GFQQ 989
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
G+ ++ L R+ +F T+YQ+ HM +DK+ R G Q
Sbjct: 990 RGLEVMYNGMTGRKL--------------RAQVFFGPTYYQRLKHMVDDKIHARARGPLQ 1035
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ---------RV 285
LT +PV R R GG+ FGEM+ DC+I+HGAS L ERL +V++
Sbjct: 1036 ILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL--MDVSDAYSCFVCNFCGLLA 1093
Query: 286 VGGP---YCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
+GG C+ CN+ ++ +PY KLL QEL MG+ +
Sbjct: 1094 MGGSKVNECKGCNNTTNVSMIEIPYAFKLLVQEL---MGMNI 1132
>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
[Piriformospora indica DSM 11827]
Length = 1223
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 172/412 (41%), Gaps = 116/412 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPSDDML------NFGKIQSKS--- 45
MNQ+S++ G+FRS Y++ +D + ++ +PS D N+ K+
Sbjct: 831 MNQSSIDRGLFRSIYYRSYMDMEKTAGQITLEEFEKPSRDTTLRMKHGNYDKLDDDGLIA 890
Query: 46 -------GDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
DI+IGK A + D S LK TE G++ VL++ + +G
Sbjct: 891 PGMNVIGEDIIIGKTAPLPPDSQELGQRTDRHTRRDVSTPLKSTESGIIDHVLITVDGEG 950
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R + +GDKF+S HGQKG +G L E P
Sbjct: 951 SKFVKIRVRST----RIPQVGDKFASRHGQKGTIGILYRQEDMPFSADGIVPDLIINPHA 1006
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A +G ATPF T EQ VS L G ++ G
Sbjct: 1007 IPSRMTIGHLVECLLSKVATLNGQEGDATPFTDLT----VEQ----VSHALRAAGYQSRG 1058
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM EDK+ R G Q L
Sbjct: 1059 LEVMYHGHTGKKL--------------QAQVYLGPTYYQRLKHMVEDKIHSRARGPVQIL 1104
Query: 237 TGRPVADRKRFGGIEFGEMKC-------DCLIAHGASGNLHERL---------------K 274
T +PV R R GG+ FGEM+ DC+I+HG + L ERL
Sbjct: 1105 TRQPVEGRSRDGGLRFGEMEASQNSLIRDCMISHGIAAFLKERLFDASDAYRLHVCDICG 1164
Query: 275 CKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+AN+ ++ CR C + + + +PY AKLL QEL +M I +
Sbjct: 1165 LTAIANLKKQSFE---CRSCKNKTAVSQLYIPYAAKLLIQELQ-AMNIAARL 1212
>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
IC-167]
gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
Length = 1131
Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats.
Identities = 117/401 (29%), Positives = 170/401 (42%), Gaps = 102/401 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEV-------------------DNKDIQVKSRPSDDMLNF 38
+N+A++E G+FRS SY+ E D + + + +D +
Sbjct: 751 INKAAIERGMFRSIFYRSYETEAMRYPMGENDRITIPPPTVRDYRGAEAYAHLDEDGIVP 810
Query: 39 GKIQSKSGDIVIGK------YAEIG--------ADHSIKLKHTERGLVLKVLLSSNDDGK 84
++ S +++IGK Y+ + D+SI ++ E+G+V +VL++ + +G
Sbjct: 811 PEVFVSSKEVLIGKISPPRFYSALAESQLAGEWKDNSITVRRGEKGIVDQVLITESSEGF 870
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF---LEQTP----------------- 124
V +R+ + LGDKF+S HGQKGV+G +E P
Sbjct: 871 KLIKVKVRE----LRIPELGDKFASRHGQKGVVGMIVPMEDMPFTENGITPDVVINPHAL 926
Query: 125 ------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
QLLEA GK A G + ATPF G I +L G R SG
Sbjct: 927 PSRMTIGQLLEAIAGKTAALYGTLVDATPFEGVPEGTI--------RSMLMKAGYRWSGR 978
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ L +D + IF + +YQ+ HM DK+ R TG Q LT
Sbjct: 979 ETMYSG-----LMGTRLD---------ADIFIGVVYYQKLHHMVADKIHARATGPMQILT 1024
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRV 285
+P R R GG+ GEM+ D LIAHGA+ LHER+ C++ +
Sbjct: 1025 RQPTEGRSREGGLRLGEMERDVLIAHGAAALLHERMVESSDKYVMYVCEDCGMMAWWDDF 1084
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
P C I I K VPY KLL QEL S+GI K
Sbjct: 1085 KKRPICPIHGDKGRIAKVIVPYAFKLLLQEL-ISLGIYPKL 1124
>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
crassa OR74A]
gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
crassa OR74A]
Length = 1005
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 143/337 (42%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD--------------NKDIQVKSRPS----DDMLNFG--- 39
MNQ+S++ G+FRS +++ D D RP D + N G
Sbjct: 666 MNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIA 725
Query: 40 -KIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK + I D+ S L+ TE G+V V ++N DG
Sbjct: 726 PGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDG 785
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 786 LRYVKVRVRTT----KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHA 841
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K GA G+ ATPF T VS LL G ++ G
Sbjct: 842 IPSRMTIAHLIECLLSKVGALKGMEGDATPFTDVT--------VDSVSNLLREHGYQSRG 893
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L R+ +F T+YQ+ HM +DK+ R G Q +
Sbjct: 894 FEIMYHGHTGKKL--------------RAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 939
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 940 TRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 976
>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
Length = 1206
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 151/303 (49%), Gaps = 40/303 (13%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 108
++GK +I D S +K+ E G+V KV+L+ +D+G F +V IR + V +GDKF+
Sbjct: 912 LLGKNLKIKTDCSSSIKNFETGVVDKVILAKSDEG--FRLVKIR--IRSVRLPQIGDKFA 967
Query: 109 SMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
S HGQKG++G + Q E + + D +M+ P A + I + +S+ +
Sbjct: 968 SRHGQKGIIGMIYRQVNMPFSEQGI---SPDIIMN---PHAIPSRMTIGHLLECLLSKAV 1021
Query: 168 NCIGARNSGITFIFKHY--FLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQF 217
+ G G F ++ + L + D + L ++SLIF T+YQ+
Sbjct: 1022 SMKGIEGDGTPFERQNMEDIMNFLEKNNFDKNGWEILYNGFNGKRIKSLIFMGPTYYQKL 1081
Query: 218 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN 277
HM EDK+ R G Q LT +PV R R GG+ FGEM+ DC+I+HGA+ L +RL ++
Sbjct: 1082 KHMVEDKIHSRARGPIQILTRQPVEGRSREGGLRFGEMERDCMISHGAAIFLKDRLFDQS 1141
Query: 278 ---------------VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMG 321
V+N Q CR C++ I +PY KLL QEL S S+G
Sbjct: 1142 DPFGIYVCDFCGFIVVSNKKQNNFE---CRNCSNRSMISFIRIPYAFKLLIQELMSLSVG 1198
Query: 322 ITL 324
+ L
Sbjct: 1199 VRL 1201
>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
Length = 1186
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 170/407 (41%), Gaps = 111/407 (27%)
Query: 1 MNQASLECGVFRS---ESYKA-EVDNKDIQVKSRPSDDML------NFGKIQSKS----- 45
M+++++E G FRS SYKA E KD++ D + ++ K+ +
Sbjct: 809 MSRSAVERGFFRSAFWRSYKATEERKKDVRETFENPDRKICRVKRADYTKLDADGLIKPG 868
Query: 46 -----GDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDGK 84
GDI++GK I D SI + +E+G+V +V+L+ N G
Sbjct: 869 MPVIGGDILVGKTIPISEAKLENAALDDTRLLKRDCSIASRTSEKGVVERVMLTENS-GN 927
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 124
F V IR + +GDKF S HGQKG G E P
Sbjct: 928 RFTKVKIR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAI 983
Query: 125 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
A L+E GK AC G YATPF + V+ E + QL
Sbjct: 984 PSRMTVAHLIETLAGKVACYKGSEVYATPFCS----VVVEDFGKALHQLK---------- 1029
Query: 178 TFIFKHYFLFCLFE----CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
F+ Y CL+ P+D LIF T+YQ+ H+S DK+ R G
Sbjct: 1030 ---FQRYGNECLYNGHTGSPLD---------HLIFFGPTYYQRLKHLSGDKIHARPRGPL 1077
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANVIQRVVG 287
QPL +P R GG+ FGEM+ DC++++GAS L ERL +V N+ +
Sbjct: 1078 QPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNICGTICA 1137
Query: 288 GPY------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ C++ I + +PY KLL QEL SM I + T
Sbjct: 1138 ADTEQNVYKCQGCDNDTRISQTLMPYACKLLFQEL-MSMAILPRLGT 1183
>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1141
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 169/402 (42%), Gaps = 113/402 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGKIQSKS 45
MNQ++++ G+FRS Y+ D + + SRP + LN+ K+
Sbjct: 767 MNQSAIDRGLFRSFFYRTYTDQESM---SRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDG 823
Query: 46 ----------GDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSND 81
D++IGK I D S ++ TE G+V V+++ N
Sbjct: 824 LISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NK 882
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 124
DG F+ V +R +GDKF+S H QKG +G E P
Sbjct: 883 DGYKFSKVKVRSG----RIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINP 938
Query: 125 ---------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
L+E LGK A G ATPF+ T I+ + +S+ G +
Sbjct: 939 HAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVDGISSRLKSY--------GFQQ 990
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
G+ ++ L R+ +F T+YQ+ HM +DK+ R G Q
Sbjct: 991 RGLEVMYNGMTGRKL--------------RAQMFFGPTYYQRLKHMVDDKIHARARGPLQ 1036
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV-------- 286
LT +PV R R GG+ FGEM+ DC+I+HGAS L ERL +V++ V
Sbjct: 1037 ILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL--MDVSDAYSCYVCDFCGLLA 1094
Query: 287 -GGP---YCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
GG C+ CN+ ++ +PY KLL QEL MG+ +
Sbjct: 1095 MGGSKVNECKGCNNTTNVSMVEIPYAFKLLIQEL---MGMNI 1133
>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1277
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 170/399 (42%), Gaps = 110/399 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNK-------DIQVKS-----RPSDDML------NFGKIQ 42
MNQ++++ G+FRS ++ D + D+ V S RP+ + N+ K++
Sbjct: 884 MNQSAVDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLE 943
Query: 43 SK---------SG-DIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLL 77
SG D++IGK +G D S ++ E G+V +V+L
Sbjct: 944 EDGLVAPGTRVSGTDVLIGKTTPLGGGVAGVTGGPGHRSKKDSSTVMRSHEDGIVDRVML 1003
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------- 124
++N +G F V IR V +GDKF+S HGQKG +G E P
Sbjct: 1004 TTNQEGFKFCKVRIRN----VRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDI 1059
Query: 125 -------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
AQL+E LGK G G ATPF T + VS L+ I
Sbjct: 1060 IVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVT--------VANVSSTLHKI 1111
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G + G ++ + L + +F TFYQ+ H+ +DK+ R+
Sbjct: 1112 GFQKHGNEVMYSGHTGRML--------------NTKVFLGPTFYQRLKHLVDDKIHSRSR 1157
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKN 277
G LT +P+ R R GG+ GEM+ DCLI+HG + L +RL KC
Sbjct: 1158 GPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGL 1217
Query: 278 VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+A R + CR C D+ + +VPY KLL QEL
Sbjct: 1218 IAVANLRKMSFE-CRGCKGKSDVSQIHVPYACKLLFQEL 1255
>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
[Encephalitozoon cuniculi]
Length = 1141
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 169/402 (42%), Gaps = 113/402 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGKIQSKS 45
MNQ++++ G+FRS Y+ D + + SRP + LN+ K+
Sbjct: 767 MNQSAIDRGLFRSFFYRTYTDQESM---SRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDG 823
Query: 46 ----------GDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSND 81
D++IGK I D S ++ TE G+V V+++ N
Sbjct: 824 LISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NK 882
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 124
DG F+ V +R +GDKF+S H QKG +G E P
Sbjct: 883 DGYKFSKVKVRSG----RIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINP 938
Query: 125 ---------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
L+E LGK A G ATPF+ T I+ + +S+ G +
Sbjct: 939 HAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVDGISSRLKSY--------GFQQ 990
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
G+ ++ L R+ +F T+YQ+ HM +DK+ R G Q
Sbjct: 991 RGLEVMYNGMTGRKL--------------RAQMFFGPTYYQRLKHMVDDKIHARARGPLQ 1036
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV-------- 286
LT +PV R R GG+ FGEM+ DC+I+HGAS L ERL +V++ V
Sbjct: 1037 ILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL--MDVSDAYSCYVCDFCGLLA 1094
Query: 287 -GGP---YCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
GG C+ CN+ ++ +PY KLL QEL MG+ +
Sbjct: 1095 MGGSKVNECKGCNNTTNVSMVEIPYAFKLLIQEL---MGMNI 1133
>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1 ERTm2]
Length = 1137
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 177/398 (44%), Gaps = 102/398 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGKI---- 41
MN+ +++ G+FRS Y+ D++ +++P + N+ K+
Sbjct: 768 MNRGAVDRGLFRSFFYRT---YSDMESRTKPEEQECFMKPDRRSVQRMKNANYEKLDIDG 824
Query: 42 ------QSKSGDIVIGKYAEIG---ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
+ D++IGK D S ++ TE G+V +V+L++ D G +A + +R
Sbjct: 825 LVPPGTRVSGEDVLIGKAVSTPDGYKDASTTMRGTESGVVDRVILTTKD-GYRYARIRVR 883
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQ 126
+ + +GDKF+S HGQKG +G + E P
Sbjct: 884 SA----RTPQMGDKFASRHGQKGTIGIMLSPEDMPFTADGITPDIIINPHAIPSRMTIGH 939
Query: 127 LLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYF 185
L+E LGK +C G ATPF TG + E +S+ L G + G ++ +
Sbjct: 940 LVECLLGKVSCMTGKEGDATPF---TGLSVEE-----ISEELQKHGYQKRGFEVMYSGFT 991
Query: 186 LFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRK 245
+ RS IF T+YQ+ HM DK+ R G Q LT +PV R
Sbjct: 992 GRKM--------------RSQIFIGPTYYQRLKHMVADKIHARAHGPVQILTRQPVEGRS 1037
Query: 246 RFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV--------------GGPYC 291
R GG+ FGEM+ DC+I+HGA+ L ERL C +V++ + + G C
Sbjct: 1038 RDGGLRFGEMERDCMISHGAAMFLKERL-C-DVSDKFEVFICNDCGLFCAGNKDRGLYLC 1095
Query: 292 RICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKFDT 328
++C + ++ +PY KLL QE ++ + + ++ +T
Sbjct: 1096 QLCGTRTNVSMVYMPYAFKLLVQEMMTMCISVQMRLET 1133
>gi|379005506|ref|YP_005261178.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
gi|375160959|gb|AFA40571.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
Length = 1127
Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats.
Identities = 118/402 (29%), Positives = 171/402 (42%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKA--------------EVDNKDIQVK--------SRPSDDMLNF 38
+N+AS+E G+FRS Y+ +++ D VK S +D +
Sbjct: 747 LNKASVERGMFRSVFYRTYETEEQRYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGK------YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ S +++IGK Y + D S+ ++ E+G+V +V+++ + +G
Sbjct: 807 PEVYVSSSEVLIGKTSPPRFYTTLETERILKERRDASVAVRRGEKGIVDRVIITESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G L
Sbjct: 867 KLVKVRLRE----LRIPELGDKFASRHGQKGVVGMLLRQEDMPFTEEGIVPDIIVNPHAL 922
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T AQLLE+ GK GA G + ATPF GV E + +LL +G + G
Sbjct: 923 PSRMTVAQLLESMAGKVGAATGNLVDATPFE----GVKEED----LRKLLLKLGYKWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF I +YQ+ HM DK+ R G Q LT
Sbjct: 975 EVMYSG-------------ITGERLVAD-IFIGIVYYQKLHHMVADKIHARARGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRV 285
+P R R GG+ GEM+ D LIAHGAS L+ERL C+ + +
Sbjct: 1021 RQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAK 1080
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I K VPY KLL QEL ++GI K +
Sbjct: 1081 SNKPKCPIHGDTGQFAKVTVPYAFKLLLQEL-IALGIYPKLE 1121
>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1172
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 174/405 (42%), Gaps = 106/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ---VKSR---PSDDML------NFGKIQSK---- 44
MNQ+S++ G+FRS Y++ D + Q K PS + +GK+
Sbjct: 797 MNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEDLECPSPETTLGMRHGTYGKLDKDGLIC 856
Query: 45 -----SG-DIVIGKYAEIGADH-------------SIKLKHTERGLVLKVLLSSNDDGKN 85
SG DI+IGK + + D S +K++E G++ +VLL++ND G
Sbjct: 857 PGTRVSGEDIIIGKTSPLPDDDPSAASNRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLR 916
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R + +GDKFSS HGQKG +G E P
Sbjct: 917 FVKIRVRS----CRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGVVPDIIVNPHAIP 972
Query: 125 -----AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S +L+ G + G
Sbjct: 973 SRMTIGQLVECLMGKVAAMMGKEGDATPFTPVT--------VENISDMLHQCGYQKRGNE 1024
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L + IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1025 VMYNGHTGRKL--------------EAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1070
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN-----VANVIQ 283
+P+ R R GG+ FGEM+ DC+I+HGA+ L ERL C+ VAN+
Sbjct: 1071 QPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRVHVCQTCGLIAVANLKN 1130
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+ C+ + +++ +PY KLL QEL SM + + T
Sbjct: 1131 QTFEC--CKNPSERMKVVQVLLPYACKLLFQEL-MSMAVAPRLVT 1172
>gi|145592515|ref|YP_001154517.1| DNA-directed RNA polymerase subunit B [Pyrobaculum arsenaticum DSM
13514]
gi|145284283|gb|ABP51865.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Pyrobaculum arsenaticum DSM
13514]
Length = 1127
Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats.
Identities = 118/402 (29%), Positives = 171/402 (42%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKA--------------EVDNKDIQVK--------SRPSDDMLNF 38
+N+AS+E G+FRS Y+ +++ D VK S +D +
Sbjct: 747 LNKASVERGMFRSVFYRTYETEEQRYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGK------YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ S +++IGK Y + D S+ ++ E+G+V +V+++ + +G
Sbjct: 807 PEVYVSSSEVLIGKTSPPRFYTTLETERILKERRDASVAVRRGEKGIVDRVIVTESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G L
Sbjct: 867 KLVKVRLRE----LRIPELGDKFASRHGQKGVVGMLLRQEDMPFTEEGIVPDIIVNPHAL 922
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T AQLLE+ GK GA G + ATPF GV E + +LL +G + G
Sbjct: 923 PSRMTVAQLLESMAGKVGAATGNLVDATPFE----GVKEED----LRKLLLKLGYKWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF I +YQ+ HM DK+ R G Q LT
Sbjct: 975 EVMYSG-------------ITGEKLVAD-IFIGIVYYQKLHHMVADKIHARARGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRV 285
+P R R GG+ GEM+ D LIAHGAS L+ERL C+ + +
Sbjct: 1021 RQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAK 1080
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I K VPY KLL QEL ++GI K +
Sbjct: 1081 SNKPKCPIHGDTGQFAKVTVPYAFKLLLQEL-IALGIYPKLE 1121
>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
Length = 1141
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 169/402 (42%), Gaps = 113/402 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGKIQSKS 45
MNQ++++ G+FRS Y+ D + + SRP + LN+ K+
Sbjct: 767 MNQSAIDRGLFRSFFYRTYTDQESM---SRPGVNEEFCKPNRGSVLRMKNLNYNKLDDDG 823
Query: 46 ----------GDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSND 81
D++IGK I D S ++ TE G+V V+++ N
Sbjct: 824 LINPGTRVTGDDVLIGKITPILDPERSTKETPVYVYKDSSTAMRRTETGIVDTVIVT-NK 882
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 124
DG F+ V +R +GDKF+S H QKG +G E P
Sbjct: 883 DGYKFSKVKVRSG----RIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINP 938
Query: 125 ---------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
L+E LGK A G ATPF+ G + E +S L G +
Sbjct: 939 HAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFS---GMSVNE-----ISARLKSYGFQQ 990
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
G+ ++ L R+ IF T+YQ+ HM +DK+ R G Q
Sbjct: 991 RGLEVMYNGMTGRKL--------------RAQIFFGPTYYQRLKHMVDDKIHARARGPLQ 1036
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------KCK--NVANVIQRV 285
LT +PV R R GG+ FGEM+ DC+I+HGAS L ERL C N+ ++
Sbjct: 1037 ILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCNICGLL--A 1094
Query: 286 VGGP---YCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
+GG C+ C++ ++ +PY KLL QEL MG+ +
Sbjct: 1095 MGGSKVNECKGCSNTTNVSIVEIPYAFKLLIQEL---MGMNI 1133
>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
Muguga]
gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
Length = 1190
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 173/407 (42%), Gaps = 112/407 (27%)
Query: 1 MNQASLECGVFRS---ESYKAE---VDNKDIQVKSRP--SDDMLNF-----------GKI 41
MNQ+S++ G+FRS +Y +E + + I+ ++P S + LN G +
Sbjct: 810 MNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTASGNFLNLKRGDYSKLDNDGLV 869
Query: 42 QSKS----GDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDD 82
+ S DI+IG+ + + AD S L+ E G+V VLL+ N+
Sbjct: 870 EPGSRVLGDDIIIGRSSPVEADPNNPQYTSEMNLRMDCSCCLRPNENGVVDNVLLTVNNK 929
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF---LEQTP--------------- 124
G F V +R + +GDKF+S HGQKG +G +E P
Sbjct: 930 GCKFTKVKVRS----IRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPH 985
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E LGK G+ G+ ATPF+ T I+ ++L C +R
Sbjct: 986 AVPSRMTIGHLIECLLGKVGSLVGMEGDATPFSKMTLDQIS-------NRLFKCRYSRYG 1038
Query: 176 GITFIFKHYFLFCLFECPMDWIAFI-CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
F F L+ S IF T+YQ+ HM EDK+ R G
Sbjct: 1039 NEAF----------------HNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVT 1082
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVA 279
LT +P R R GG+ FGEM+ DC+I+HGA+ L ERL C +VA
Sbjct: 1083 MLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLSVA 1142
Query: 280 NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
N+ C C++ I + +PY KLL QEL +M I K
Sbjct: 1143 NLNNSSFQ---CTACDNKTQISQVTIPYACKLLLQEL-MAMAIYPKL 1185
>gi|407404199|gb|EKF29761.1| DNA-directed RNA polymerase III subunit, putative, partial
[Trypanosoma cruzi marinkellei]
Length = 1194
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 171/407 (42%), Gaps = 111/407 (27%)
Query: 1 MNQASLECGVFRS---ESYKA-EVDNKDIQVKSRPSDDML------NFGKIQSKS----- 45
M+++++E G FRS SYKA E KD++ D + ++ K+ +
Sbjct: 817 MSRSAVERGFFRSAFWRSYKATEERKKDVRETFENPDPNICRVKRADYTKLDTDGLIKPG 876
Query: 46 -----GDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDGK 84
GDI++GK I + SI + +E+G+V KV+L+ N+ G
Sbjct: 877 MPVMGGDILVGKTIPIPEAAQENTAMKNKRLLKRECSIASRTSEKGVVEKVMLTENN-GN 935
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 124
F V +R + +GDKF S HGQKG G E P
Sbjct: 936 RFTKVKVR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAV 991
Query: 125 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
A L+E GK AC G YATPF + V+ E + QL
Sbjct: 992 PSRMTVAHLIETLAGKVACYKGSEVYATPFCS----VVVEDFGKALHQLK---------- 1037
Query: 178 TFIFKHYFLFCLFE----CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
F+ Y CL+ P+D LIF T+YQ+ H+S DK+ R G
Sbjct: 1038 ---FQRYGNECLYNGHTGSPLD---------HLIFFGPTYYQRLKHLSGDKIHARPRGPL 1085
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANVIQRVVG 287
QPL +P R GG+ FGEM+ DC++++GAS L ERL +V N+ +
Sbjct: 1086 QPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNICGTICA 1145
Query: 288 GPY------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ C++ I + +PY KLL QEL SM I + T
Sbjct: 1146 ADTEQNVYKCQGCDNDTRISQTLMPYACKLLFQEL-MSMAILPRLGT 1191
>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm3]
gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm1]
Length = 1137
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 169/385 (43%), Gaps = 101/385 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGKI---- 41
MN+ +++ G+FRS Y+ D++ +++P + N+ K+
Sbjct: 768 MNRGAVDRGLFRSFFYRT---YSDMESRTKPEEQECFMKPDRRSVQRMKNANYEKLDMDG 824
Query: 42 ------QSKSGDIVIGKYAEIG---ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIR 92
+ D++IGK D S ++ TE G+V +V+L++ D G +A + +R
Sbjct: 825 LVPPGTRVSGEDVLIGKTVSTPDGYKDASTTMRGTESGVVDRVILTTKD-GYRYARIRVR 883
Query: 93 QSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQ 126
+ + +GDKF+S HGQKG +G + E P
Sbjct: 884 SA----RTPQMGDKFASRHGQKGTIGIMLSPEDMPFTADGITPDIIINPHAIPSRMTIGH 939
Query: 127 LLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYF 185
L+E LGK +C G ATPF TG + E +S+ L G + G ++ +
Sbjct: 940 LVECLLGKVSCMSGKEGDATPF---TGLSVEE-----ISEELQKHGYQKRGFEVMYSGFT 991
Query: 186 LFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRK 245
+ RS IF T+YQ+ HM DK+ R G Q LT +PV R
Sbjct: 992 GRKM--------------RSQIFIGPTYYQRLKHMVADKIHARAHGPVQILTRQPVEGRS 1037
Query: 246 RFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV--------------GGPYC 291
R GG+ FGEM+ DC+I+HGA+ L ERL C +V++ + + G C
Sbjct: 1038 RDGGLRFGEMERDCMISHGAATFLKERL-C-DVSDKFEVFICNDCGVFCAGNKERGLYLC 1095
Query: 292 RICNSADDIIKANVPYGAKLLSQEL 316
++C + + +PY KLL QE+
Sbjct: 1096 QLCGTRTSVSMVYMPYAFKLLVQEM 1120
>gi|126460694|ref|YP_001056972.1| DNA-directed RNA polymerase subunit B [Pyrobaculum calidifontis JCM
11548]
gi|126250415|gb|ABO09506.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Pyrobaculum calidifontis JCM
11548]
Length = 1127
Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats.
Identities = 118/402 (29%), Positives = 169/402 (42%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKA--------------EVDNKDIQVK--------SRPSDDMLNF 38
+N+AS+E G+FRS Y+ ++ D VK S +D +
Sbjct: 747 LNKASVERGMFRSVFYRTYETEEQKYPGGEEDRIEVPDSSVKGYRGPEAYSHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGK------YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ S +++IGK Y + D S+ ++ E+G+V +V+++ + +G
Sbjct: 807 PEVYVSSNEVLIGKTSPPRFYTTLETERILKERRDASVAVRRGEKGIVDRVIITESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G L
Sbjct: 867 KLVKVRLRE----LRIPELGDKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHAL 922
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T QLLE+ GK GA G + ATPF GV E + +LL +G R G
Sbjct: 923 PSRMTVGQLLESIAGKVGAATGQLVDATPFE----GVGEED----LRKLLLKLGFRWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF I +YQ+ HM DK+ R G Q LT
Sbjct: 975 EVMYSG-------------ITGEKLVAD-IFIGIVYYQKLHHMVADKIHARARGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRV 285
+P R R GG+ GEM+ D LIAHGAS L+ERL C+ + +
Sbjct: 1021 RQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYVMYVCELCGLPAYLDAK 1080
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I K VPY KLL QEL ++GI K +
Sbjct: 1081 TNKPRCPIHGDTGQFAKVVVPYAFKLLLQEL-MALGIYPKLE 1121
>gi|40644996|emb|CAD88981.1| DNA-directed RNA polymerase subunit B [Vicia sativa]
Length = 260
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 113/242 (46%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHSI L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 20 DHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 75
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 135
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L ++IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFETMYNGHTGRRL--------------SAMIFLGP 173
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 233
Query: 272 RL 273
RL
Sbjct: 234 RL 235
>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
Length = 1233
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 168/405 (41%), Gaps = 107/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDN----------------KDIQVKSRPS------DDMLNF 38
MNQ++++ G+FRS Y+ D+ +D + S DD +
Sbjct: 856 MNQSAIDRGLFRSVFYRTYSDHERKKGNFLLENFEKPKRDTTAGMKTSTYEKLEDDGIIA 915
Query: 39 GKIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
++ DI+IGK + D S L+ E G+V V+++++ +G
Sbjct: 916 PGVRVSGSDIIIGKTVPLPEESAKQKTSRQTRLDMSTPLRSNENGIVDTVVVTTDSEGFK 975
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------- 120
F + +R +V +GDKFSS HGQKG G
Sbjct: 976 FVKIKVR----VVRIPQIGDKFSSRHGQKGTCGITYRQEDLPFTREGIVPDIIVNPHAIP 1031
Query: 121 -EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
T QL+E LGK + G ATPF T+ + ++ S++L+ +G +
Sbjct: 1032 SRMTVGQLIECLLGKISSLSGNEGDATPF--------TDANVNYFSEMLHSLGYQKRANE 1083
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
+F + L + IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1084 VMFNGHTGRKL--------------EAQIFIGPTYYQRLKHMVDDKIHSRARGPLQNLTR 1129
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------KCKNVANVIQ 283
+PV R R GG+ FGEM+ DC+I+HG++ L ERL AN+ Q
Sbjct: 1130 QPVEGRARDGGLRFGEMERDCMISHGSAAWLKERLFQVSDEYRVHICNVCGMMATANIKQ 1189
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+ C C++ + +PY KL+ QEL +M + ++ T
Sbjct: 1190 QQFK---CDACDNKTSFSQVFIPYAFKLMIQEL-MAMNLAVRIIT 1230
>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
Length = 1307
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 143/337 (42%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 975 MNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 1034
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 1035 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKIDVSTPLRSTESGIVDQVLVSTSNDD 1094
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 1095 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHA 1150
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S LL G ++ G
Sbjct: 1151 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SSLLREHGYQSRG 1202
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ Y L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1203 FEVMYNGYTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1248
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL
Sbjct: 1249 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1285
>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
G186AR]
Length = 1307
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 143/337 (42%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 975 MNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 1034
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S+++D
Sbjct: 1035 PGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKIDVSTPLRSTESGIVDQVLVSTSNDD 1094
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 1095 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHA 1150
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T I S LL G ++ G
Sbjct: 1151 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSI--------SSLLREHGYQSRG 1202
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ Y L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1203 FEVMYNGYTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1248
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL
Sbjct: 1249 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1285
>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
Ankara]
gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
Length = 1223
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 172/407 (42%), Gaps = 112/407 (27%)
Query: 1 MNQASLECGVFRS---ESYKAE---VDNKDIQVKSRPSD-------------DMLNFGKI 41
MNQ+S++ G+FRS +Y +E + + I+ ++P+ + N G I
Sbjct: 843 MNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTSTGKFLNLKRGDYSKLDNDGLI 902
Query: 42 QSKS----GDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDD 82
+ S DI+IG+ + + +D S L+ E G+V VLL+ N+
Sbjct: 903 EPGSRVLGDDIIIGRSSPVESDPNNPQYTPEMNLRMDCSCCLRPNENGVVDNVLLTVNNK 962
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF---LEQTP--------------- 124
G F V +R + +GDKF+S HGQKG +G +E P
Sbjct: 963 GCKFTKVKVRS----IRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPH 1018
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E LGK G+ G+ ATPF+ T I+ ++L C +R
Sbjct: 1019 AVPSRMTIGHLIECLLGKVGSLVGMEGDATPFSKMTLEQIS-------NRLFKCRYSRYG 1071
Query: 176 GITFIFKHYFLFCLFECPMDWIAFI-CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
F F L+ S IF T+YQ+ HM EDK+ R G
Sbjct: 1072 NEAF----------------HNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVT 1115
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVA 279
LT +P R R GG+ FGEM+ DC+I+HGA+ L ERL C +VA
Sbjct: 1116 MLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLSVA 1175
Query: 280 NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
N+ C C++ I + +PY KLL QEL +M I K
Sbjct: 1176 NLNNSSFQ---CTACDNKTQISQVTIPYACKLLLQEL-MAMAIYPKL 1218
>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
Length = 1182
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 146/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFG--- 39
MNQ+S++ G+FRS +++ D + +++K D + G
Sbjct: 831 MNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPNRSDTLRLKHSTYDKLDADGIVA 890
Query: 40 -KIQSKSGDIVIGKY-------AEIGA--------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK AE+G D S L+ TE G++ +V++++N DG
Sbjct: 891 PGIRVSGEDIIIGKTCPINPDNAELGQRSNQHVKRDASTPLRSTESGIIDQVVMTTNQDG 950
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ V +R + +GDKF+S HGQKG +G E P
Sbjct: 951 MRYVKVRVRTT----KVPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHA 1006
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K G+ ATPF T VS LL G ++ G
Sbjct: 1007 IPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVT--------VDSVSDLLREHGYQSRG 1058
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L RS IF T+YQ+ HM +DK+ R G Q +
Sbjct: 1059 FEIMYHGHTGRKL--------------RSQIFFGPTYYQRLRHMVDDKIHARARGPLQIM 1104
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 1105 TRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERL 1141
>gi|67475595|ref|XP_653488.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica HM-1:IMSS]
gi|56470445|gb|EAL48102.1| DNA-directed RNA polymerase subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449706687|gb|EMD46481.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
histolytica KU27]
Length = 1170
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 170/396 (42%), Gaps = 93/396 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDN------------KDIQVKSRPSDDMLNFGKI------- 41
MNQ S++ G+FRS ++K ++ K + S ++D+ + K+
Sbjct: 802 MNQGSIDRGLFRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEKVDVDGILA 861
Query: 42 ---QSKSGDIVIGKYAE----IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQS 94
+ K DI++ + E D S++ K E G+V +V++++ G + V +R
Sbjct: 862 PGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRS- 920
Query: 95 VNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLL 128
+ +GDKFSS HGQKG +G E P QL+
Sbjct: 921 ---IRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLV 977
Query: 129 EAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF 187
E LGK GA G + TPF V ++ + + L+ + + G +F +
Sbjct: 978 ECLLGKVGALVGDVQSGTPFQKD---VTVDR----IGERLHKLKYQRRGYEALFSGHTGR 1030
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
L SL++ T+YQ+ H+ +DKV R TG + LT +P+ R R
Sbjct: 1031 KL--------------DSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRD 1076
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRIC 294
GG+ GEM+ DC+I+HG S L ERL KC ++ V C C
Sbjct: 1077 GGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKC-HMPAVANHKACTFQCSCC 1135
Query: 295 NSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
I K ++PY KLL QEL SM + + T++
Sbjct: 1136 KDKTHISKVDIPYACKLLFQEL-MSMAVCPRIYTEV 1170
>gi|407045039|gb|EKE42974.1| DNA-directed RNA polymerase, beta subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 1170
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 170/396 (42%), Gaps = 93/396 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDN------------KDIQVKSRPSDDMLNFGKI------- 41
MNQ S++ G+FRS ++K ++ K + S ++D+ + K+
Sbjct: 802 MNQGSIDRGLFRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEKVDVDGILA 861
Query: 42 ---QSKSGDIVIGKYAE----IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQS 94
+ K DI++ + E D S++ K E G+V +V++++ G + V +R
Sbjct: 862 PGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRS- 920
Query: 95 VNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLL 128
+ +GDKFSS HGQKG +G E P QL+
Sbjct: 921 ---IRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLV 977
Query: 129 EAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF 187
E LGK GA G + TPF V ++ + + L+ + + G +F +
Sbjct: 978 ECLLGKVGALVGDVQSGTPFQKD---VTVDR----IGERLHKLKYQRRGYEALFSGHTGR 1030
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
L SL++ T+YQ+ H+ +DKV R TG + LT +P+ R R
Sbjct: 1031 KL--------------DSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRD 1076
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRIC 294
GG+ GEM+ DC+I+HG S L ERL KC ++ V C C
Sbjct: 1077 GGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKC-HMPAVANHKACTFQCSCC 1135
Query: 295 NSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
I K ++PY KLL QEL SM + + T++
Sbjct: 1136 KDKTHISKVDIPYACKLLFQEL-MSMAVCPRIYTEV 1170
>gi|242070157|ref|XP_002450355.1| hypothetical protein SORBIDRAFT_05g004155 [Sorghum bicolor]
gi|241936198|gb|EES09343.1| hypothetical protein SORBIDRAFT_05g004155 [Sorghum bicolor]
Length = 152
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 88/155 (56%), Gaps = 38/155 (24%)
Query: 7 ECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKH 66
+ G ++ES + VDN D DD L + ++ DI+IGK +E G DH IKLKH
Sbjct: 6 KIGFGKTESKRGRVDNLD--------DDGLPYIGANLQTEDIIIGKVSESGEDHIIKLKH 57
Query: 67 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE----- 121
TE+G+ VLLS+N++G+NF VV+ RQ V + CL DKFSSMHGQKG +GFLE
Sbjct: 58 TEKGMDQNVLLSANNEGRNFVVVTFRQ----VWTPCLRDKFSSMHGQKGGVGFLESQENF 113
Query: 122 ---------------------QTPAQLLEAALGKG 135
QTP QLLEAALGKG
Sbjct: 114 PFTHEGIVPDLVINSHAFPTRQTPRQLLEAALGKG 148
>gi|40643994|emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp.
Oxelman 2319]
Length = 627
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 145/335 (43%), Gaps = 88/335 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKSR---PSDDML------NFGKIQSK---- 44
MNQ+S++ G FRS SY+ E VK P+ + ++ K+ +
Sbjct: 289 MNQSSIDRGFFRSIFFRSYRDEEKKMGTLVKEEFGSPNRENTMGMRHGSYDKLDADGFAP 348
Query: 45 -----SG-DIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
SG D++IGK + D HS L+H+E G+V +V L++N DG
Sbjct: 349 PGTRVSGEDVIIGKTTSLPQDEAQGQASRYTRRDHSTSLRHSESGIVDQVALTTNADGLR 408
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 409 FVKVRMRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIP 464
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S+ L+ G + G
Sbjct: 465 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFE 516
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + + + LIF T+YQ+ HM +DK+ R G Q LT
Sbjct: 517 RVYNGHTGRIMGD--------------LIFMGPTYYQRLKHMVDDKIHSRGRGPVQILTR 562
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
+P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 563 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 597
>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1196
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/418 (28%), Positives = 173/418 (41%), Gaps = 123/418 (29%)
Query: 1 MNQASLECGVFRSESYKAEVDNK-----------DIQVKSRPSDDML------NFGKIQS 43
MNQ++++ G+FRS Y+ D + + + RP+ D ++GK+
Sbjct: 806 MNQSAIDRGLFRSSYYRCYNDQEKSSSVGSVGALNSEFFERPAFDNCKGMKTGDYGKLDD 865
Query: 44 K---------SGD-IVIGKYAEIGA-----------DHSIKLKHTERGLVLKVLLSSNDD 82
SGD ++IGK A + A D S +K E G+V VL+S+ +
Sbjct: 866 DGLVSPGTRVSGDDVLIGKTAPMDAIANTPSRYTKRDCSTSMKANENGIVDNVLISTTKE 925
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F V IR V +GDKF+S HGQKG +G E P
Sbjct: 926 GYRFTKVRIRN----VRIPQVGDKFASRHGQKGTIGMTYRQEDMPFTCEGIVPDIIVNPH 981
Query: 125 --------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
AQL+E LGK A G ATPF T+ H +S+ L+ +G +
Sbjct: 982 AIPSRMTIAQLIECILGKVAVFQGCEGDATPF--------TDVHVDDISKRLHAMGYQRH 1033
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G +++ + L + +F TFYQ+ H+ +DKV R G
Sbjct: 1034 GNEAMYQGHTGRPL--------------NARVFIGPTFYQRLKHLVDDKVHSRARGPVAM 1079
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ------------ 283
LT +P+ R R GG+ GEM+ DCLI HG + + +R C + I
Sbjct: 1080 LTRQPLEGRARDGGLRMGEMERDCLITHGCANFIRDRFFCNSDQYRIHICERCGLTAQSN 1139
Query: 284 -----------RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
VG PY +IC + +PY KLL QEL SM I+ + T++
Sbjct: 1140 LKKMTYECRTPTCVGLPY-KIC-------QVEIPYACKLLFQELQ-SMCISPRIYTEV 1188
>gi|167385143|ref|XP_001737225.1| DNA-directed RNA polymerase II subunit RPB2 [Entamoeba dispar SAW760]
gi|165900064|gb|EDR26512.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
dispar SAW760]
Length = 1170
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 170/396 (42%), Gaps = 93/396 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDN------------KDIQVKSRPSDDMLNFGKI------- 41
MNQ S++ G+FRS ++K ++ K + S ++D+ + K+
Sbjct: 802 MNQGSIDRGLFRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEKVDVDGILA 861
Query: 42 ---QSKSGDIVIGKYAE----IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQS 94
+ K DI++ + E D S++ K E G+V +V++++ G + V +R
Sbjct: 862 PGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRS- 920
Query: 95 VNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLL 128
+ +GDKFSS HGQKG +G E P QL+
Sbjct: 921 ---IRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLV 977
Query: 129 EAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF 187
E LGK GA G + TPF IT ++ IG R + + + Y
Sbjct: 978 ECLLGKVGALVGDVQSGTPFQKD----IT----------VDKIGERLHKLKYQRRGYE-- 1021
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
LF + SL++ T+YQ+ H+ +DKV R TG + LT +P+ R R
Sbjct: 1022 ALFSGHTGR-----KLDSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRD 1076
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRIC 294
GG+ GEM+ DC+I+HG S L ERL KC ++ V C C
Sbjct: 1077 GGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKC-HMPAVANHKACTFQCSCC 1135
Query: 295 NSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
I K ++PY KLL QEL SM + + T++
Sbjct: 1136 KDKTHISKVDIPYACKLLFQEL-MSMAVCPRIYTEV 1170
>gi|352682853|ref|YP_004893377.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
gi|350275652|emb|CCC82299.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
Length = 1127
Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats.
Identities = 117/402 (29%), Positives = 168/402 (41%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKA----------------EVDNKDIQVKSRPS------DDMLNF 38
MN++S+E G RS Y+ EV + + P +D +
Sbjct: 747 MNKSSVERGFMRSNFYRTYETEEQKYPGGEEDRIEVPDPSARGYRGPEAYGHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGKYA--------------EIGADHSIKLKHTERGLVLKVLLSSNDDGK 84
++ G+++IGK A + D SI ++ E+G+V +V+++ + +G
Sbjct: 807 PEVYVSGGEVIIGKTAPPRFYMTLETEKILKERRDASIPVRRGEKGIVDRVVITESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G L
Sbjct: 867 KLVKVRLRE----LRVPELGDKFASRHGQKGVIGMLLRQEDMPFTEDGIVPDIIVNPHAM 922
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T QLLE+ GK GA G + ATPF GV +S + +LL +G R G
Sbjct: 923 PSRMTVGQLLESIAGKAGAMVGRLIDATPFE----GV----PESELRELLMKLGYRWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF I +YQ+ HM DK+ R+ G Q LT
Sbjct: 975 EVMYSG-------------ITGEKLVAD-IFIGIVYYQKLHHMVADKIHARSRGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRV 285
+P R R GG+ GEM+ D LIAHGAS L+ER+ C+ + +
Sbjct: 1021 RQPTEGRSREGGLRLGEMERDVLIAHGASALLYERMVESSDKYVMYVCELCGLPAYLDAK 1080
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I K VPY KLL QEL S+GI K +
Sbjct: 1081 TNRPKCPIHGETGQFAKVVVPYAFKLLLQEL-ISLGIYPKLE 1121
>gi|4867793|emb|CAB43061.1| RNA polymerase II [Buddleja asiatica]
Length = 260
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 112/242 (46%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 18 DHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 73
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 74 MTYTQEDMPWTQEGICPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVT 133
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L ++IF
Sbjct: 134 --------VDNISKALHKCGYQMRGYETMYNGHTGRRLP--------------AMIFLGP 171
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 172 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 231
Query: 272 RL 273
RL
Sbjct: 232 RL 233
>gi|4867897|emb|CAB43086.1| RNA polymerase II [Strychnos potatorum]
Length = 263
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISRALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGAS L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|119872217|ref|YP_930224.1| DNA-directed RNA polymerase subunit B [Pyrobaculum islandicum DSM
4184]
gi|119673625|gb|ABL87881.1| DNA-directed RNA polymerase, subunit B' [Pyrobaculum islandicum DSM
4184]
Length = 1127
Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats.
Identities = 118/403 (29%), Positives = 173/403 (42%), Gaps = 104/403 (25%)
Query: 1 MNQASLECGVFRSESYKA--------------EVDNKDIQVK--------SRPSDDMLNF 38
+N+A++E G+FRS Y+ +++ D VK S +D +
Sbjct: 747 LNKAAVERGMFRSVFYRTYETEEQKYPGGEEDKIEVPDSSVKGYRGPEAYSHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGK------YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ S +++IGK Y + D S+ ++ E+G+V +V+++ + +G
Sbjct: 807 PEVYVSSNEVIIGKTSPPRFYTTLETERILKERRDSSVAVRRGEKGIVDRVIITESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------- 122
V +R+ + LGDKF+S HGQKGV+G F E+
Sbjct: 867 RLVKVRLRE----LRIPELGDKFASRHGQKGVVGMILRHEDMPFTEEGIVPDIIVNPHAL 922
Query: 123 ----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T QLLE+ GK GA G + ATPF GV E+ + +LL +G + G
Sbjct: 923 PSRMTVGQLLESIAGKIGASLGALVDATPFE----GVKEEE----LRKLLMKLGYKWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF + +YQ+ HM DK+ R G Q LT
Sbjct: 975 EVMYSG-------------ITGEKLVAD-IFIGVVYYQKLHHMVADKIHARARGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK-------------CKNVANVIQR 284
+P R R GG+ GEM+ D LIAHGAS L+ERL C A + R
Sbjct: 1021 RQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAR 1080
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I K VPY KLL QEL ++GI K +
Sbjct: 1081 -TNKPRCPIHGDTGQFAKVIVPYAFKLLLQEL-IALGIYPKLE 1121
>gi|4867856|emb|CAB43079.1| RNA polymerase II [Peltanthera floribunda]
Length = 260
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 20 DHSTSLRHSETGTVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 75
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 135
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L S+IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFETMYNGHTGRRLT--------------SMIFLGP 173
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 233
Query: 272 RL 273
RL
Sbjct: 234 RL 235
>gi|3746590|gb|AAC64010.1| RNA polymerase II subunit 2 [Kopsia fruticosa]
Length = 269
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 19/225 (8%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSKHGQKGTIG 77
Query: 119 FLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
+ T + A G + +A P + G +I + + ++ +G
Sbjct: 78 -MTYTQEDMPSTAEGITPDISVNPHAIPSRMTIGQLI----ECIMGKVAAHMGKEGDATP 132
Query: 179 F--IFKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L +C F + + + IF T+YQ+ HM +DK+ R
Sbjct: 133 FTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSR 192
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 193 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 237
>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
Length = 1143
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 165/408 (40%), Gaps = 113/408 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGKIQSKS 45
MNQ++++ G+FRS Y+ D ++ +RP LN+ K+ +
Sbjct: 770 MNQSAIDRGLFRSFFYRTYTDQENT---TRPGTHEEFCKPLRSEVIRMRNLNYSKLDNDG 826
Query: 46 ----------GDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSND 81
D++IGK + I D S ++ TE G V V+++ N
Sbjct: 827 IIPTGTRVTGDDVLIGKVSPILDPERSTKGNPVYLKKDSSTSMRRTEDGFVDSVIVT-NK 885
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 124
+G FA V +R +GDKF+S H QKG +G E P
Sbjct: 886 EGYKFAKVKVRS----CRIPQMGDKFASRHAQKGTVGITLNQEDMPFTSEGIVPDIIINP 941
Query: 125 ---------AQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
L+E +GK A G ATPF T I+E+ + + Q
Sbjct: 942 HAIPSRMTIGHLIECLMGKTCALTGEEGDATPFNGVTVDNISEKLKEYNYQ--------Q 993
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
G ++ L R+ I+ T+YQ+ HM +DK+ R G Q
Sbjct: 994 RGFEVMYNGMTGHKL--------------RAQIYIGPTYYQRLKHMVDDKIHARAKGPLQ 1039
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK-------------CKNVANV 281
LT +PV R R GG+ FGEM+ DC+I+HGAS L ERL C +A
Sbjct: 1040 ILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDPYTCCICDLCGLIAID 1099
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+R C+ CN+ ++ +PY KLL QEL M I + T+
Sbjct: 1100 TKRYNE---CKGCNNRTNLSLVEIPYAFKLLIQEL-MGMNIAPRIKTE 1143
>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 942
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 147/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D +++K D + + G I
Sbjct: 618 MNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIA 677
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 678 PGTGVAGEDIIIGKTAPIPPDSEELGQRTQTHTRRDVSTPLKSTESGIVDQVLITTNSEG 737
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V +R + +GDKF+S HGQKG +G E P
Sbjct: 738 QKFVKVRVRST----RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHA 793
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS L G ++ G
Sbjct: 794 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSTFLRQKGYQSRG 845
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ ++ T+YQ+ HM +DK+ R G Q L
Sbjct: 846 LEVMYHGHTGRKL--------------QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 891
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+I+HG +G L ERL
Sbjct: 892 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERL 928
>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
bisporus H97]
Length = 1183
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 148/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSDDMLNFGKIQ 42
MNQ+S++ G+FRS Y++ +D + +++K D + + G I
Sbjct: 842 MNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIA 901
Query: 43 SKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+G DI+IGK A I D S LK TE G+V +VL+++N +G
Sbjct: 902 PGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEG 961
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V +R + +GDKF+S HGQKG +G E P
Sbjct: 962 QKFVKVRVRAT----RIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHA 1017
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E L K A G ATPF T+ VS L G ++ G
Sbjct: 1018 IPSRMTIGHLVECLLSKVATLIGNEGDATPF--------TDLTVESVSTFLRQKGYQSRG 1069
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + L ++ I+ T+YQ+ HM +DK+ R G Q L
Sbjct: 1070 LEVMYHGHTGRKL--------------QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1115
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+I+HG +G L ERL
Sbjct: 1116 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERL 1152
>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
Length = 1173
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 110/405 (27%), Positives = 168/405 (41%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPSDDMLN------FGKIQSK---- 44
MNQ+ ++ G+FRS Y+ A +DN + ++ +P+ D + + K+
Sbjct: 795 MNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIIS 854
Query: 45 -----SGD-IVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
SGD ++IGK + D S L+ +E G+V +V+L+ N DG
Sbjct: 855 PGMRVSGDDVIIGKTISLPDVEDDLEANTKKYTKRDASTFLRSSETGIVDQVMLTLNTDG 914
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 915 NKFVKIRVRS----VRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTNEGITPDIIINPHA 970
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 971 VPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISNLLSEYGYHLRG 1023
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q +
Sbjct: 1024 NEIMYNGHTGHKL--------------TTQVFLGPTYYQRLKHMVDDKIHSRARGPVQMM 1069
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N +AN+
Sbjct: 1070 NRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYVCNNCGLIVIANL 1129
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + + +PY KLL QEL SM I +
Sbjct: 1130 RTNTFE---CKACRNKTQVSAIRIPYACKLLFQEL-MSMSIAPRL 1170
>gi|3746592|gb|AAC64011.1| RNA polymerase II subunit 2 [Mostuea brunonis]
Length = 261
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 16 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 71
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 72 MTYTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 131
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 132 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 169
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGAS L E
Sbjct: 170 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 229
Query: 272 RL 273
RL
Sbjct: 230 RL 231
>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 1155
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 145/337 (43%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS ++ +D + ++ +P+ DD L
Sbjct: 816 MNQSSIDRGLFRSLFFRTYMDQERRNGISIVEEFEKPNRSNTLGFKVGTYEKLDDDGLVA 875
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ E G+V +V+L++N +G
Sbjct: 876 PGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRSAESGIVDQVMLTTNAEG 935
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 936 LKFVKVRMRTT----KVPQIGDKFASRHGQKGTIGMTYRHEDMPFTAEGIVPDIIINPHC 991
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T+ VS+LL G ++ G
Sbjct: 992 IPSRMTVAHLVECLLSKVAALRGYEGDATPF--------TDLTVDAVSKLLRENGYQSRG 1043
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + I+ T+YQ+ HM +DK+ R G +Q L
Sbjct: 1044 FEVMYNGHTGKKLM--------------AQIYLGPTYYQRLRHMVDDKIHARARGPYQNL 1089
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +P+ R R GG+ FGEM+ DC+IAHG +G L ERL
Sbjct: 1090 TRQPMEGRARDGGLRFGEMERDCMIAHGVAGFLKERL 1126
>gi|4867854|emb|CAB43082.1| RNA polymerase II [Retzia capensis]
Length = 256
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V GDKFSS HGQKG +G
Sbjct: 20 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQXGDKFSSRHGQKGTVG 75
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVT 135
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L ++IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFETMYNGHTGRRLT--------------AMIFLGP 173
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 233
Query: 272 RL 273
RL
Sbjct: 234 RL 235
>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
Length = 1171
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 157/372 (42%), Gaps = 88/372 (23%)
Query: 11 FRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIG------------- 57
FR+ S+ K +D ++N G + DI+IGK + I
Sbjct: 827 FRAPSWSKTYAMKRGDYSKLDNDGLINPG-TRVHGDDILIGKVSPIPNQTDEEGRIQKYT 885
Query: 58 -ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV 116
D S+ LK + G+V +V+LS N G F + +R + +GDKF+S HGQKG
Sbjct: 886 ERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVR----TLRVPTIGDKFASRHGQKGT 941
Query: 117 LGF---LEQTP-----------------------AQLLEAALGK-GACDGLMSYATPFAT 149
+G E P L+E LGK G G ATPF+
Sbjct: 942 MGISYRQEDMPFTQFGVVPDIIMNPHAVPSRMTIGHLVECLLGKVGLLSGEEGDATPFSQ 1001
Query: 150 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
T I + L+ +G + G ++ + L + IF
Sbjct: 1002 VTVHEIMAR--------LHELGFQRQGREVMYNGHTGLRL--------------PAKIFI 1039
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
T+YQ+ HM EDK+ R G Q LT +P+ R R GG+ FGEM+ DC+I+HGA+ L
Sbjct: 1040 GPTYYQRLKHMVEDKIHSRARGPMQMLTRQPMEGRGREGGLRFGEMERDCMISHGAAKFL 1099
Query: 270 HERL----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 314
ERL C N +AN+ + CR C ++ I + ++PY KLL Q
Sbjct: 1100 KERLFDISDAYRVHVCDNCGMFAIANLYKNHYE---CRACKNS-TISQVHIPYACKLLFQ 1155
Query: 315 ELSFSMGITLKF 326
EL +M I K
Sbjct: 1156 EL-MTMSIMPKL 1166
>gi|4867862|emb|CAB43072.1| RNA polymerase II [Logania vaginalis]
Length = 262
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISRALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 172/407 (42%), Gaps = 111/407 (27%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKD-----IQVKSRP-------------SDDMLNFG 39
M+++++E G FRS SYKA + K ++ R +D ++ G
Sbjct: 809 MSRSAVERGFFRSVFWRSYKASEEKKREGQEMFEIPDRKVCHVKRADYTKLDTDGLIKPG 868
Query: 40 KIQSKSGDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I GDI++GK I D SI + E+G+V +V+L+ N G
Sbjct: 869 -IPVIGGDIIVGKTIPIPESMREDTTLTNTRILKRDCSISSRTAEKGVVDRVMLTENK-G 926
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG--FLEQ------------------- 122
F V IR + +GDKF S HGQKG G F ++
Sbjct: 927 NRFTKVRIR----TIKIPNIGDKFCSPHGQKGTNGIQFRQEDLPFNNDGISPDLIINPHA 982
Query: 123 -----TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQL-LNCIGARN- 174
T A L+E GK AC G YATPF + V+ E ++QL LN G
Sbjct: 983 IPSRMTVAHLIETLAGKVACFKGGEVYATPFCS----VVVEDFGKALTQLNLNRYGNERL 1038
Query: 175 -SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
+G T + P+D LIF T+YQ+ H+S DK+ R G
Sbjct: 1039 YNGHTGL------------PLD---------HLIFFGPTYYQRLKHLSSDKIHARPRGPL 1077
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANVIQRVVG 287
QPL +P R GG+ FGEM+ DC++++GAS L ERL +V NV +
Sbjct: 1078 QPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICA 1137
Query: 288 GPY------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ C++ I + +PY KLL QEL SM I + T
Sbjct: 1138 ADTDQNVYKCQGCDNDSHIAQVLMPYACKLLFQEL-MSMAILPRLGT 1183
>gi|4867858|emb|CAB43085.1| RNA polymerase II [Stephanotis floribunda]
Length = 261
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|67810650|gb|AAY82001.1| RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
Length = 704
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 142/335 (42%), Gaps = 88/335 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E + +K RP+ DD L
Sbjct: 294 MNQSSIDRGFFRSIFYRSYRDEEKRQGTLIKEEFERPNRENTTGMRHGSYDELDDDGLAP 353
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK + D S L+H+E G++ +VLL++N DG
Sbjct: 354 PGTRVSGEDVIIGKTTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLR 413
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F + +R + +GDKFSS HGQK +G E P
Sbjct: 414 FVKIRVRS----IRIPQIGDKFSSRHGQKCTVGMTYTQEDMPWTQEGITPDIIVNPHAIP 469
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF +T I S+ L+ G + G
Sbjct: 470 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDATVDNI--------SKALHKCGYQMRGFE 521
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L + IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 522 VMYNGHTGRRL--------------SAHIFLGPTYYQRLKHMMDDKIHSRGRGPVQILTR 567
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
+P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 568 QPAEGRSRVGGLRFGEMERDCMIAHGAAHFLKERL 602
>gi|4867799|emb|CAB43059.1| RNA polymerase II [Antonia ovata]
Length = 262
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEXDATPFXDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISRALHXCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|4867878|emb|CAB43080.1| RNA polymerase II [Pinckneya pubescens]
Length = 263
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 23 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 78
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 79 MTYTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 138
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 139 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 176
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 177 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 236
Query: 272 RL 273
RL
Sbjct: 237 RL 238
>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
Length = 1174
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 172/386 (44%), Gaps = 71/386 (18%)
Query: 1 MNQASLECGVFRS---ESYKAEVDN------KDIQVKSRPSDDML----NFGKIQSK--- 44
M+Q++++ G+FRS +Y +V ++I+ K P D ++ N+ K+ +
Sbjct: 795 MSQSAIDRGLFRSFFFRTYTEQVKKVGALELEEIE-KPNPRDTLIRRGNNYEKLDADGLV 853
Query: 45 ------SGD-IVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDD 82
SGD I++GK I D S ++ TE G+V +VLL++ND
Sbjct: 854 PPGTRVSGDDILVGKTVPIPVDSEELGQRTARHVKRDSSATMRSTEYGVVDQVLLTTND- 912
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS 142
+ + V V +GDK S HGQKGVLG L + L A G +
Sbjct: 913 ---LDLKMCKTRVRSVKIPQVGDKHCSRHGQKGVLGMLYRQ-EDLPYTADGIVPDVIINP 968
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF--IFKHYFLFCLFECPMDWIAFI 200
+A P + G +I + +S++ G G F + L +C F
Sbjct: 969 HAIPSRMTIGHLI----ECLLSKVSALTGDEGDGTPFTDVTVEDISNALAKCGYQKRGFE 1024
Query: 201 CL--------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
L + + IF TFYQ+ HM +DK+ R G Q LT +PV R R GG+ F
Sbjct: 1025 VLYNGQTGQKLAANIFIGPTFYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 1084
Query: 253 GEMKCDCLIAHGASGNLHERL-KCKNVANV----------IQRVVGGPY-CRICNSADDI 300
GEM+ D ++AHGA+ L ERL + V I + Y CRIC++ I
Sbjct: 1085 GEMEHDVIVAHGAAMFLKERLFDVSDAFRVHVCDLCGLMCIANLSKNSYECRICHNKTQI 1144
Query: 301 IKANVPYGAKLLSQELSFSMGITLKF 326
+ ++PY KLL QEL SM I +
Sbjct: 1145 SQIHLPYATKLLFQEL-MSMNIAPRI 1169
>gi|4867866|emb|CAB43074.1| RNA polymerase II [Mitreola petiolata]
Length = 261
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 21 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 76
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 77 MTYTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 136
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 137 --------VDNISRALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 174
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 175 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 234
Query: 272 RL 273
RL
Sbjct: 235 RL 236
>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1189
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 171/389 (43%), Gaps = 91/389 (23%)
Query: 1 MNQASLECGVFRS---ESYKAE---VDNKDIQVKSRPS--DDMLNF-----------GKI 41
MNQ+S++ G+FRS +Y +E + + I+ ++P+ + LN G I
Sbjct: 824 MNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTATSNFLNLKRGDYSKLDNDGLI 883
Query: 42 Q--SKSGDIVIGKYAEIG--ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+ S+S AE+ D S L+ E G+V VLL+ N+ G F V +R
Sbjct: 884 EPGSRSDPNNPNYPAEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRS---- 939
Query: 98 VHSACLGDKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAA 131
V +GDKF+S HGQKG +G +E P L+E
Sbjct: 940 VRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLIECL 999
Query: 132 LGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLF 190
LGK GA G+ ATPF+ T I+ S+L C ++ F
Sbjct: 1000 LGKVGALVGMEGDATPFSKMTLEQIS-------SRLFKCHYSKYGNEAF----------- 1041
Query: 191 ECPMDWIAFI-CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 249
F L+ S IF T+YQ+ HM EDK+ R G LT +P R R GG
Sbjct: 1042 -----HNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGG 1096
Query: 250 IEFGEMKCDCLIAHGASGNLHERLKCK------NVANV-----IQRVVGGPY-CRICNSA 297
+ FGEM+ DC+I+HGA+ L ERL + +V N+ I + + C C++
Sbjct: 1097 LRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNLCGLLSIANLNNSSFQCTACDNK 1156
Query: 298 DDIIKANVPYGAKLLSQELSFSMGITLKF 326
I + +PY KLL QEL +M I K
Sbjct: 1157 TQISQVTIPYACKLLLQEL-MAMAIYPKL 1184
>gi|4867899|emb|CAB43088.1| RNA polymerase II [Usteria guineensis]
Length = 268
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 21 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 76
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 77 MTYTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 136
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 137 --------VDNISRALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 174
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 175 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 234
Query: 272 RL 273
RL
Sbjct: 235 RL 236
>gi|4867893|emb|CAB43087.1| RNA polymerase II [Sanango racemosum]
Length = 259
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GD FSS HGQKG +G
Sbjct: 18 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDXFSSRHGQKGTVG 73
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 74 MTYTQEDMPWTVEGISPDIIVNPXAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 133
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L S+IF
Sbjct: 134 --------VDNISKALHKCGYQMRGFETMYNGHTGRRLT--------------SMIFLGP 171
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 172 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 231
Query: 272 RL 273
RL
Sbjct: 232 RL 233
>gi|4867872|emb|CAB43073.1| RNA polymerase II [Mussaenda erythrophylla]
Length = 261
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|4867807|emb|CAB43064.1| RNA polymerase II [Chiococca alba]
Length = 267
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTVEGINPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 169/406 (41%), Gaps = 109/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAE-------------VDNKDIQVKSRPSDDMLNFGKIQSK 44
M+++++E G FRS SYKA D K VK + G I+
Sbjct: 809 MSRSAVERGFFRSVFWRSYKASEEKKREGQEMFEIPDRKVCHVKRADYTKLDTDGLIKPG 868
Query: 45 ----SGDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDGK 84
GDI++GK I D SI + E+G+V +V+L+ N G
Sbjct: 869 MPVIGGDIIVGKTIPIPESMREDTTLTNTRILKRDCSISSRTAEKGVVDRVMLTENK-GN 927
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG--FLEQ-------------------- 122
F V IR + +GDKF S HGQKG G F ++
Sbjct: 928 RFTKVRIR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDLPFNNDGISPDLIINPHAI 983
Query: 123 ----TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQL-LNCIGARN-- 174
T A L+E GK AC G YATPF + V+ E ++QL LN G
Sbjct: 984 PSRMTVAHLIETLAGKVACFKGGEVYATPFCS----VVVEDFGKALTQLNLNRYGNERLY 1039
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
+G T + P+D LIF T+YQ+ H+S DK+ R G Q
Sbjct: 1040 NGHTGL------------PLD---------HLIFFGPTYYQRLKHLSSDKIHARPRGPLQ 1078
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANVIQRVVGG 288
PL +P R GG+ FGEM+ DC++++GAS L ERL +V NV +
Sbjct: 1079 PLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAA 1138
Query: 289 PY------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ C++ I + +PY KLL QEL SM I + T
Sbjct: 1139 DTDQNVYKCQGCDNDSHIAQVLMPYACKLLFQEL-MSMAILPRLGT 1183
>gi|4867874|emb|CAB43077.1| RNA polymerase II [Oldenlandia corymbosa]
Length = 262
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R + +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----IRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|56675686|emb|CAB43081.2| RNA polymerase II [Potalia resinifera]
Length = 250
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|3746594|gb|AAC64012.1| RNA polymerase II subunit 2 [Periploca graeca]
Length = 260
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 22 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 77
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 78 MTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 137
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 138 --------VDNISKALHRCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 175
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 176 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 235
Query: 272 RL 273
RL
Sbjct: 236 RL 237
>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 1202
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 150/345 (43%), Gaps = 74/345 (21%)
Query: 19 EVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLS 78
+V + ++ + ++ L+ G S +G G A I + + KL + + KV++S
Sbjct: 883 KVSSGEVYINKVTPENALSSGITGSDAG----GPIAYIPSPQTYKL--PDPSYIDKVMIS 936
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ---------------- 122
+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 937 TTEGENQLLKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDII 992
Query: 123 ----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 171
T ++LE +GK G G Y TPF G + E VS+
Sbjct: 993 MNPHGFPSRMTVGKMLELVVGKAGVLSGQFGYGTPFG---GSPVEEMSAILVSK------ 1043
Query: 172 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 231
G ++ K Y + P+ + +FT +YQ+ HM +DK+ R G
Sbjct: 1044 ----GFSYGGKDYLTSGITGEPLP---------AYVFTGPIYYQKLKHMVQDKMHSRARG 1090
Query: 232 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANV 281
LT +P R R GG+ GEM+ DCLIA+G S L ERL C+N
Sbjct: 1091 PRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCENCG-- 1148
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +F
Sbjct: 1149 FMGYLG--WCQRCKTSRGVVKMAIPYAAKLLVQEL-FSMNVVARF 1190
>gi|440296149|gb|ELP88990.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
invadens IP1]
Length = 1180
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 167/386 (43%), Gaps = 91/386 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKS-----RPSD--DMLNFGKIQS---------- 43
MNQ S++ G+FRS +K + + ++ RP + D+ + K Q
Sbjct: 814 MNQGSIDRGLFRSMCFKTFLKDYKKGEETDLMFFRPCEGTDLKDVSKYQHLDVDGVAPPG 873
Query: 44 ---KSGDIVIGKYAEIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 96
++ D++IG + + + D S++ K E G+V +V++++ ++ + +R
Sbjct: 874 TKVRADDVIIGAFYKGKSGELKDCSMRYKPRENGVVDQVVVATTENRAKMIKIKMRS--- 930
Query: 97 MVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEA 130
+ +GDKFSS HGQKG +G E P QL+E
Sbjct: 931 -IRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFNIEGINPDIIMNPHAIPSRMTVGQLVEC 989
Query: 131 ALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCL 189
LGK GA G + TPF G+ + +S L+ + + G +F + L
Sbjct: 990 LLGKVGALVGDVQNGTPFQP---GLTVD----VISDRLHKLKYQRWGYEALFSGHTGRKL 1042
Query: 190 FECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 249
+L++ T+YQ+ H+ +DKV R TG + LT +P+ R R GG
Sbjct: 1043 --------------DTLVYMGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGG 1088
Query: 250 IEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNS 296
+ GEM+ DC+I+HG S L ERL KC A QR C C
Sbjct: 1089 LRLGEMERDCMISHGMSALLRERLFLASDRYQVYVCDKCHMPAVANQRSSTFE-CSCCKD 1147
Query: 297 ADDIIKANVPYGAKLLSQELSFSMGI 322
I K +PY AKLL QEL SM I
Sbjct: 1148 RTHISKVEIPYAAKLLFQEL-MSMAI 1172
>gi|56675685|emb|CAB43065.2| RNA polymerase II [Fagraea sp. Bremer 900109]
Length = 258
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 20 DHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 75
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPFTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 135
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 173
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 233
Query: 272 RL 273
RL
Sbjct: 234 RL 235
>gi|4867870|emb|CAB43084.1| RNA polymerase II [Spigelia anthelmia]
Length = 260
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 110/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 20 DHSTSLRHNENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 75
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPFTXEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 135
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 173
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 233
Query: 272 RL 273
RL
Sbjct: 234 RL 235
>gi|4867880|emb|CAB43083.1| RNA polymerase II [Rondeletia odorata]
Length = 261
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 21 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 76
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 77 MTYTQEDMPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 136
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 137 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 174
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 175 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 234
Query: 272 RL 273
RL
Sbjct: 235 RL 236
>gi|171186405|ref|YP_001795324.1| DNA-directed RNA polymerase subunit B [Pyrobaculum neutrophilum
V24Sta]
gi|170935617|gb|ACB40878.1| RNA polymerase Rpb2 domain 6 [Pyrobaculum neutrophilum V24Sta]
Length = 1127
Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats.
Identities = 116/402 (28%), Positives = 171/402 (42%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKA--------------EVDNKDIQVK--------SRPSDDMLNF 38
+N+AS+E G+FRS Y+ +++ D VK S +D +
Sbjct: 747 LNKASVERGMFRSVFYRTYETEEQKYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAP 806
Query: 39 GKIQSKSGDIVIGK------YAEIGA--------DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ S ++++GK Y + A D S+ ++ E+G+V +V+++ + +G
Sbjct: 807 PEVYVSSNEVLVGKTSPPRFYTTLEAERILKERRDASVAVRRGEKGIVDRVIITESPEGN 866
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G L
Sbjct: 867 KLVKVRLRE----LRVPELGDKFASRHGQKGVVGMLLRHEDMPFTEDGIVPDIIVNPHAL 922
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T AQLLE+ GK GA G + AT F GV E + +LL +G + G
Sbjct: 923 PSRMTVAQLLESMAGKVGASLGALVDATAFE----GVKEED----LRKLLLKLGYKWDGK 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ I LV IF + +YQ+ HM DK+ R G Q LT
Sbjct: 975 EVMYSG-------------ITGERLVAD-IFIGVVYYQKLHHMVADKIHARARGPVQILT 1020
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK--NVANVIQRV 285
+P R R GG+ GEM+ D LIAHGAS L+ERL C+ + +
Sbjct: 1021 RQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAK 1080
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
P C I K VPY KLL QEL ++GI K +
Sbjct: 1081 SNKPKCPIHGDTGQFAKVVVPYAYKLLLQEL-IALGIYPKLE 1121
>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
Length = 1141
Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats.
Identities = 111/397 (27%), Positives = 167/397 (42%), Gaps = 102/397 (25%)
Query: 1 MNQASLECGVFRS----------------ESYKAEVDNKDIQVKSRPS------DDMLNF 38
+N++++E G++RS E + E+ + +++ P +D +
Sbjct: 757 LNKSAIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPSAEVRGYKGPEAYAHLDEDGIVS 816
Query: 39 GKIQSKSGDIVIGK---------YAEIGA-----DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ G+++IGK Y E D SI ++ E+G+V V+++ ++G
Sbjct: 817 PEVFVSGGEVLIGKTSPPRFYGVYTETVVSSARRDSSITVRRGEKGIVDSVVVTETNEGY 876
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G +
Sbjct: 877 KLVKVKVRE----LRIPELGDKFASRHGQKGVMGMMIPMQDMPFTEDGITPDIIVNPHAL 932
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T QLLE+ GK A G+M ATPF GV E+ + LL G R G
Sbjct: 933 PSRMTVGQLLESMAGKVAALRGVMIDATPFE----GVTEEE----LRDLLIRSGFRWDGK 984
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ L + IF + +YQ+ HM DK+ R G Q LT
Sbjct: 985 EVMYSGLTGRKL--------------EADIFIGVVYYQKLHHMVADKIHARARGPVQILT 1030
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANV--IQRV 285
+P R R GG+ GEM+ D LIAHGA+ L ERL C++ +
Sbjct: 1031 RQPTEGRSREGGLRLGEMERDVLIAHGAAALLRERLVESSDRYVMYVCEDCGMIAWYDSN 1090
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
G P C I I++ VPY KLL QEL S+GI
Sbjct: 1091 KGKPVCPIHGDKGRIVRVVVPYAFKLLLQEL-MSLGI 1126
>gi|3746598|gb|AAC64014.1| RNA polymerase II subunit 2 [Kopsia fruticosa]
Length = 259
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 120/263 (45%), Gaps = 59/263 (22%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 19 DHSTSLRHSETGIVDQVLLTTNADGLRFVKVRMRS----VRLPQIGDKFSSRHGQKGTIG 74
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 75 MTYTQEDMPWTLEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 134
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + + + +IF
Sbjct: 135 --------VDNISKALHKCGYQMRGFERMYNGHTGRIMGD--------------MIFLGP 172
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 173 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 232
Query: 272 RLKCKNVANVIQRVVGGPYCRIC 294
RL ++ A + C+IC
Sbjct: 233 RLFDQSDAYRVH------VCQIC 249
>gi|288561072|ref|YP_003424558.1| DNA-directed RNA polymerase subunit B' RpoB1 [Methanobrevibacter
ruminantium M1]
gi|288543782|gb|ADC47666.1| DNA-directed RNA polymerase subunit B' RpoB1 [Methanobrevibacter
ruminantium M1]
Length = 603
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 136/328 (41%), Gaps = 83/328 (25%)
Query: 44 KSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
+SGD++IGK AE + S+ ++H E+G+V VLL+ +G
Sbjct: 289 ESGDVLIGKTSPPRFLGEIDEFGTVAEKRRETSVTVRHGEKGIVDAVLLTETVEGSKLTK 348
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------------- 124
+ +R + GDKF+S HGQKGV+G + + P
Sbjct: 349 IRVRDT----RQPEFGDKFASRHGQKGVVGLILSQDDIPFTEDGVVPDIIVNPHAIPSRM 404
Query: 125 --AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
Q+LE GK C +G TPF + G I + C N G+T
Sbjct: 405 SVGQVLEMVAGKAGCMEGHRMDGTPFNDNVEGEIKRALHDNGFESAGCESLYN-GVTG-- 461
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
+ + IF + +YQ+ HM+ DKV R+TG Q LT +P
Sbjct: 462 -------------------ERIEAEIFVGVAYYQKLHHMTTDKVYARSTGPVQVLTRQPT 502
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 288
R R GG+ FGEM+ DCLIAHGA+ L ERL +C +A V +
Sbjct: 503 EGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEAVVCNECGMLA-VYDKNKNK 561
Query: 289 PYCRICNSADDIIKANVPYGAKLLSQEL 316
YC IC + + + Y KLL EL
Sbjct: 562 MYCPICGDS-ETYPVEISYAFKLLLDEL 588
>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma vivax
Y486]
Length = 1186
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 168/411 (40%), Gaps = 119/411 (28%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKD-----IQVKSRP-------------SDDMLNFG 39
M+++++E G FRS SYKA +NK +V R +D ++ G
Sbjct: 809 MSRSAVERGFFRSVFWRSYKASEENKKEGKEVFEVPDRKICHVKRADYSKLDTDGLIKPG 868
Query: 40 KIQSKSGDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ GDI++GK I D SI + E+G+V KV+L+ N G
Sbjct: 869 -MPVMGGDILVGKTVPIPESMRENATTANTRIMKRDCSISSRTAEKGVVDKVMLTENK-G 926
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF S HGQKG G E P
Sbjct: 927 NRFTKVKVR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNSDGISPDLIINPHA 982
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E GK AC G YATPF + V+ E + QL C
Sbjct: 983 IPSRMTVAHLIETLAGKVACYKGGEVYATPFCS----VVVEDFGKALQQL-KC------- 1030
Query: 177 ITFIFKHYFLFCLFE----CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
Y CL+ P++ LIF T+YQ+ H+S DK+ R G
Sbjct: 1031 -----HRYGNECLYNGHTGLPLE---------HLIFFGPTYYQRLKHLSGDKIHARPRGP 1076
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNV- 278
QPL +P R GG+ FGEM+ DC++++GAS L ERL C +
Sbjct: 1077 LQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYAVHVCNMCGTIC 1136
Query: 279 -ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
A+ Q V C+ C++ I +PY KLL QEL SM I + T
Sbjct: 1137 AADTEQNVYN---CQGCDNDARISHVLMPYACKLLFQEL-MSMAILPRLGT 1183
>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1212
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 170/414 (41%), Gaps = 117/414 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDI-----------QVKSRPSDDML------NFGKIQS 43
+NQ++++ G+FRS Y+ +D + ++ +PS D +GK+
Sbjct: 822 LNQSAIDRGLFRSSYYRCYIDQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDD 881
Query: 44 K---------SGD-IVIGKYAEIGA-----------DHSIKLKHTERGLVLKVLLSSNDD 82
SGD ++IGK A I A D S +K E G+V VL+S+ +
Sbjct: 882 DGLVAPGTRVSGDDVLIGKTAPIDATAGMPSRYSKRDCSTSMKANEHGIVDNVLISTTKE 941
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F V IR V + +GDKF+S HGQKG +G E P
Sbjct: 942 GYRFTKVRIRN----VRTPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGIVPDIIVNPH 997
Query: 125 --------AQLLEAALGK----GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA 172
AQL+E LGK C+G ATPF T +S L+ +G
Sbjct: 998 AIPSRMTIAQLIECLLGKVVVFQGCEG---DATPFTDVT--------VEDISTRLHAMGY 1046
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
+ G +++ + L + +F TFYQ+ H+ +DKV R G
Sbjct: 1047 QRHGNEALYQGHTGRPL--------------NARVFIGPTFYQRLKHLVDDKVHSRARGP 1092
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVA 279
LT +P+ R R GG+ GEM+ DCLI HG + + +R +C A
Sbjct: 1093 VAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFMRDRFFVNSDQYRIHICERCGLTA 1152
Query: 280 NVIQRVVG----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ + P C I + +PY AKLL QEL+ SM I + T+
Sbjct: 1153 QANLKKMTYECRSPMC--VGRPTQICQVEIPYAAKLLLQELN-SMCIQTRIYTK 1203
>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
Length = 1149
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 143/321 (44%), Gaps = 62/321 (19%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 98
+ + SGD +G+ ++ L K E V +V++S +D+ + V +RQ+
Sbjct: 850 VPTNSGDSSLGQPQQVENHREAPLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQT---- 905
Query: 99 HSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAAL 132
LGDKFSS HGQKGV G + Q T +++E
Sbjct: 906 RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELIS 965
Query: 133 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK G +G + Y T F GG E+ +S++L G SG ++ CL
Sbjct: 966 GKAGVLNGSLEYGTCF----GGSKLEE----MSKILVEKGFSYSGKDMLYSGITGECL-- 1015
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
++ IF +YQ+ HM DK+ R G LT +P R R GG+
Sbjct: 1016 ------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLR 1063
Query: 252 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 305
GEM+ DC+IA+GAS L ERL +V N + +C C SA++IIK +
Sbjct: 1064 LGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSAENIIKMTI 1123
Query: 306 PYGAKLLSQELSFSMGITLKF 326
PY AKLL QEL SM I +
Sbjct: 1124 PYAAKLLFQEL-LSMNIAPRL 1143
>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
Length = 1149
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 144/321 (44%), Gaps = 62/321 (19%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV 98
+ + SGD +G+ ++ + L K E V +V++S +D+ + V +RQ+
Sbjct: 850 VPTNSGDSSLGQPQQVESHREAPLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQT---- 905
Query: 99 HSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAAL 132
LGDKFSS HGQKGV G + Q T +++E
Sbjct: 906 RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELIS 965
Query: 133 GK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK G +G + Y T F GG E+ +S++L G SG ++ CL
Sbjct: 966 GKAGVLNGSLEYGTCF----GGSKLEE----MSKILVEKGFSYSGKDMLYSGITGECL-- 1015
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
++ IF +YQ+ HM DK+ R G LT +P R R GG+
Sbjct: 1016 ------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLR 1063
Query: 252 FGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANV 305
GEM+ DC+IA+GAS L ERL +V N + +C C S+++IIK +
Sbjct: 1064 LGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSSENIIKMTI 1123
Query: 306 PYGAKLLSQELSFSMGITLKF 326
PY AKLL QEL SM I +
Sbjct: 1124 PYAAKLLFQEL-LSMNIAPRL 1143
>gi|56675684|emb|CAB43058.2| RNA polymerase II [Anthocleista grandiflora]
Length = 257
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 18 DHSTXLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 73
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 74 MTYTQEDMPFTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 133
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 134 --------VDNISKALHRCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 171
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 172 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 231
Query: 272 RL 273
RL
Sbjct: 232 RL 233
>gi|218884686|ref|YP_002429068.1| DNA-directed RNA polymerase subunit B [Desulfurococcus kamchatkensis
1221n]
gi|218766302|gb|ACL11701.1| DNA-directed RNA polymerase, subunit B [Desulfurococcus kamchatkensis
1221n]
Length = 1149
Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats.
Identities = 98/336 (29%), Positives = 146/336 (43%), Gaps = 80/336 (23%)
Query: 40 KIQSKSGDIVIGKYA----------EIGA----DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ Q GD++IGK + E+G D SI ++H E+G+V VL++ + +G
Sbjct: 826 ETQVSGGDVLIGKVSPPRFLSTQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGNK 885
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------- 120
V +R + LGDKF+S HGQKGVLG L
Sbjct: 886 LIKVRVRD----LRIPELGDKFASRHGQKGVLGLLLPQYDMPFTEEGVTPDLIINPHAFP 941
Query: 121 -EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
T AQL+E+ GK A +G + TPF +++ + L
Sbjct: 942 SRMTVAQLMESIAGKAAALEGRIIDGTPF-----------YKTPIEDLQ----------I 980
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
+ +H + + E D L+++ +F I +YQ+ HM+ DK+ R G Q LT
Sbjct: 981 ILRRHGYPYTGEEAMYDGRTGE-LIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTR 1039
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRVV 286
+P R R GG+ +GEM+ DCLI HG++ L E + ++ + +I R
Sbjct: 1040 QPTEGRSRAGGLRWGEMEVDCLIGHGSALLLKEAMTDRSDSTIIYVCELCGSMGWYDRNK 1099
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
G C I + V Y KLL QEL SMGI
Sbjct: 1100 GKFVCPIHKEKGVLKPVEVSYAFKLLLQEL-MSMGI 1134
>gi|4867795|emb|CAB43060.1| RNA polymerase II [Alstonia scholaris]
Length = 258
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 110/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 20 DHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTIG 75
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPFTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 135
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 136 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 173
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG FGEM+ DC+IAHGA+ L E
Sbjct: 174 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGFRFGEMERDCMIAHGAAHFLKE 233
Query: 272 RL 273
RL
Sbjct: 234 RL 235
>gi|336121473|ref|YP_004576248.1| DNA-directed RNA polymerase subunit B [Methanothermococcus
okinawensis IH1]
gi|334855994|gb|AEH06470.1| DNA-directed RNA polymerase subunit B [Methanothermococcus
okinawensis IH1]
Length = 611
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 149/355 (41%), Gaps = 83/355 (23%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLL 77
DD + + + KSGD++IGK + D S+ ++H E G+V V+L
Sbjct: 279 DDGIVEVESEVKSGDVIIGKTSPPRFLEEQDISLRTKSQRRDTSVTVRHGEGGIVDSVIL 338
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 137
S +G A + +R V LGDKF+S HGQKGV+G + P + +
Sbjct: 339 SETKEGNRLAKIRVRD----VRIPELGDKFASRHGQKGVIGLI--VPQEDMPFTENGVFP 392
Query: 138 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITFI-------- 180
D +++ +A P + G Q+L IG R G F
Sbjct: 393 DLIINPHAIPSRMTIG------------QVLEMIGGKVGALECRRVDGTIFSGEKEWDLR 440
Query: 181 -------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
FKH+ +++ + IF I +YQ+ H+ K+ R+ G
Sbjct: 441 ETLEKYGFKHHGKEVMYDGKTGK-----KLECEIFVGIAYYQKLHHLVAGKIHARSRGPI 495
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVAN 280
Q LT +P R R GG+ FGEM+ D LI HGA+ L ERL KC +A
Sbjct: 496 QVLTRQPTEGRAREGGLRFGEMERDVLIGHGAALLLKERLFDESDPYECYICSKCGEIA- 554
Query: 281 VIQRVVGGPYCRICNSADD------IIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ G YC +C +D I N+PY KLL EL SMGI K + +
Sbjct: 555 IYDHKRGIKYCPVCGETEDIQSNRKIPPVNLPYAFKLLLDELR-SMGINPKMELK 608
>gi|390939172|ref|YP_006402910.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
16532]
gi|390192279|gb|AFL67335.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
16532]
Length = 1166
Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats.
Identities = 98/336 (29%), Positives = 146/336 (43%), Gaps = 80/336 (23%)
Query: 40 KIQSKSGDIVIGKYA----------EIGA----DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ Q GD++IGK + E+G D SI ++H E+G+V VL++ + +G
Sbjct: 843 ETQVSGGDVLIGKVSPPRFLSAQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGNK 902
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------- 120
V +R + LGDKF+S HGQKGVLG L
Sbjct: 903 LIKVRVRD----LRIPELGDKFASRHGQKGVLGLLLPQYDMPFTEEGVTPDLIINPHAFP 958
Query: 121 -EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
T AQL+E+ GK A +G + TPF +++ + L
Sbjct: 959 SRMTVAQLMESIAGKAAALEGRIIDGTPF-----------YKTPIEDLQ----------I 997
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
+ +H + + E D L+++ +F I +YQ+ HM+ DK+ R G Q LT
Sbjct: 998 ILRRHGYPYTGEEAMYDGRTGE-LIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTR 1056
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRVV 286
+P R R GG+ +GEM+ DCLI HG++ L E + ++ + +I R
Sbjct: 1057 QPTEGRSRAGGLRWGEMEVDCLIGHGSALLLKEAITDRSDSTIIYVCELCGSMGWYDRNK 1116
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
G C I + V Y KLL QEL SMGI
Sbjct: 1117 GKFVCPIHKEKGVLKPVEVSYAFKLLLQEL-MSMGI 1151
>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
Length = 1194
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 172/417 (41%), Gaps = 110/417 (26%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPS-----------------DDMLN 37
MN ++++ G+FRS Y+ A +DN + ++ +P+ D +++
Sbjct: 802 MNNSAIDRGLFRSVFYRSYRDNEANIDNANEELIEKPTREKCSGMRHSLYDKLDEDGIIS 861
Query: 38 FGKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDD 82
G ++ D++IGK + D S L+ +E G+V +V+LS N+D
Sbjct: 862 PG-MRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNND 920
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 921 GNKFVKIRMRS----VRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPH 976
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E GK A G + ATPF + + +S LL G
Sbjct: 977 AVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISGLLCEYGYHLR 1029
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + L + IF T+YQ+ HM +DK+ R G Q
Sbjct: 1030 GNEVMYNGHTGKKL--------------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQM 1075
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VAN 280
+ +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N VAN
Sbjct: 1076 MNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVAN 1135
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSMAA 337
+ C+ C + + +PY KLL QEL SM I + + G +A
Sbjct: 1136 LRTNSFE---CKACRNKTQVSAVRIPYACKLLFQEL-MSMSIAPRLMVKPQGPKRSA 1188
>gi|4867813|emb|CAB43067.1| RNA polymerase II [Gelsemium sempervirens]
Length = 236
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 5 DHSXXLRHSETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 60
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 61 MTYTQEDMPFTVEGITPDIXVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 120
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 121 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 158
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 159 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 218
Query: 272 RL 273
RL
Sbjct: 219 RL 220
>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
Length = 1196
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 162/394 (41%), Gaps = 105/394 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDI------QVKSRPS----------------DDMLNF 38
MN+ +++ G+FRS Y++ D + ++ +PS DD L
Sbjct: 784 MNRGAIDRGLFRSVFYRSYRDQESSGDFNSEEIFEKPSKETCSGMHNAMYDKLDDDGLVA 843
Query: 39 GKIQSKSGDIVIGKYAE---------------IGADHSIKLKHTERGLVLKVLLSSNDDG 83
+ GDIVIGK A + D S L+ +E G+V +VLL+ + +G
Sbjct: 844 PGTRVSGGDIVIGKTALLPEDADALGDTNKRFVKRDASTGLRSSESGIVDQVLLTVSQEG 903
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R V +GDKF+S HGQKG G E P
Sbjct: 904 YKFTKVRVRS----VRIPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGITPDIIINPHA 959
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF +T Q +S LL+ G G
Sbjct: 960 IPSRMTIGHLIECLQGKVSANKGEIGDATPF----NDTLTVQK---ISSLLSDYGYHLRG 1012
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1013 NEVLYNGFTGRKL--------------NTQVFLGPTYYQRLKHMVDDKIHARARGPLQNL 1058
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK-------------CKNVANVIQ 283
T +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C VA +
Sbjct: 1059 TRQPMQGRARDGGLRFGEMERDCQISHGAAQFLRERLYDASDPYIVHMCNLCGLVA--VA 1116
Query: 284 RVVGGPY-CRICNSADDIIKANVPYGAKLLSQEL 316
+ Y C+ C + I + +PY KLL QEL
Sbjct: 1117 NLRNDTYECKGCRNKTRISQVRIPYACKLLFQEL 1150
>gi|126465702|ref|YP_001040811.1| DNA-directed RNA polymerase subunit B [Staphylothermus marinus F1]
gi|126014525|gb|ABN69903.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Staphylothermus marinus F1]
Length = 1156
Score = 110 bits (276), Expect = 7e-22, Method: Composition-based stats.
Identities = 98/327 (29%), Positives = 140/327 (42%), Gaps = 80/327 (24%)
Query: 44 KSGDIVIGKYA----------EIGA-----DHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GD++IGK + +GA D S+ +H E+G+V V+++++ DG
Sbjct: 838 KGGDVLIGKISPPRFMTAQEYTVGAGITRQDASVVTRHGEKGIVDVVMVTTDIDGNRLVK 897
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQ 122
V +R + LGDKF+S HGQKGV+G L
Sbjct: 898 VRVRD----LRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGIVPDLIINPHAFPSRM 953
Query: 123 TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
T QL+E+ GK A +G ATPF H+ + L+ IT +
Sbjct: 954 TVGQLIESIAGKAAALEGRFVDATPF-----------HKEPIDNLM---------IT-LK 992
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
+H + +E D L ++ IF I +YQ+ HM DK+ R G Q LT +P
Sbjct: 993 RHGYPMSGYETMYDGRTGEIL-KTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPT 1051
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRVVGGP 289
R + GG+ FGEM+ DCL+ HGAS L E++ K+ I R+ G
Sbjct: 1052 EGRAKEGGLRFGEMEVDCLVGHGASLLLKEQMLDKSDKTTIYVCELCGHIGYYDRIRGKY 1111
Query: 290 YCRICNSADDIIKANVPYGAKLLSQEL 316
C I + V Y KLL QEL
Sbjct: 1112 MCPIHKDKGKLKPVEVSYAFKLLVQEL 1138
>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
Length = 1152
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 143/337 (42%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 820 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 879
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S++++
Sbjct: 880 PGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNED 939
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 940 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHA 995
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 996 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1047
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1048 FEVMYNGHTGRKLV--------------AQIFLGPTYYQRLRHMVDDKIHARARGPTQIL 1093
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL
Sbjct: 1094 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1130
>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
Silveira]
Length = 1205
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 143/337 (42%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVA 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A + D S L+ TE G+V +VL+S++++
Sbjct: 933 PGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNED 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQIFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1183
>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1185
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 174/406 (42%), Gaps = 108/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDNKDI-QVK----SRPSDDMLNFG 39
M+++++E G FRS S+KA E N+++ +VK S+ D L
Sbjct: 807 MSRSAVERGFFRSAFWRSFKAKEERQKRDALETFENPNREVCRVKRADYSKLDTDGLIKP 866
Query: 40 KIQSKSGDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ GD+V+GK + D SI + TE+G+V KV+L+ N
Sbjct: 867 GMRVLGGDVVVGKTIPLPEADLDKLTTGNTKITKRDASITSRTTEKGVVEKVMLTMNSSD 926
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ FA V IR + +GDKF S HGQKG G E P
Sbjct: 927 R-FAKVKIR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGVVPDLIINPHA 981
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E GK AC G YATPF + V+ + + L+ +G++ G
Sbjct: 982 IPSRMTVAHLIETLAGKVACYKGGEVYATPFCS----VVVDD----FGKALHALGSQRYG 1033
Query: 177 ITFIFK-HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
++ H L P+D LIF TFYQ+ H+S DK+ R G QP
Sbjct: 1034 NECLYNGHTGL------PLD---------HLIFFGPTFYQRLKHLSGDKIHARPRGPLQP 1078
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
L +P R GG+ FGEM+ DC++++GAS L ERL C + V
Sbjct: 1079 LVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNHCGTIC-VA 1137
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+ C+ C + I + +PY KLL QEL SM I + T
Sbjct: 1138 DTKLNRYQCKGCENDTRISQVLMPYACKLLFQEL-MSMTILPRLGT 1182
>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
Length = 1205
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 143/337 (42%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVS 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERL 1183
>gi|402591318|gb|EJW85248.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 641
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 168/405 (41%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPSDDMLN------FGKIQSK---- 44
MNQ+ ++ G+FRS Y+ A +DN + ++ +P+ D + + K+
Sbjct: 263 MNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIIS 322
Query: 45 -----SGD-IVIGKY-----AEIGADHSIK----------LKHTERGLVLKVLLSSNDDG 83
SGD ++IGK E D +IK L+ +E G+V +V+L+ N DG
Sbjct: 323 PGMRVSGDDVIIGKTISLPDTEDDLDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDG 382
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 383 NKFVKIRVRS----VRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHA 438
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 439 VPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISNLLQEYGYHLRG 491
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L +F T+YQ+ HM +DK+ R G Q +
Sbjct: 492 NEIMYNGHTGRKL--------------TVQVFLGPTYYQRLKHMVDDKIHSRARGPVQMM 537
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N VAN+
Sbjct: 538 NRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVVANL 597
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + + +PY KLL QEL SM I +
Sbjct: 598 ---RTNSFECKACRNKTQVSAFRIPYACKLLFQEL-MSMSIAPRL 638
>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
Length = 1205
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 143/337 (42%), Gaps = 90/337 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+ D++ ++ +P DD +
Sbjct: 873 MNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVS 932
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + + D S L+ TE G+V +VL+S+++D
Sbjct: 933 PGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDD 992
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 993 LKFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHA 1048
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K + G ATPF T VS LL G ++ G
Sbjct: 1049 IPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVT--------VDSVSSLLREHGYQSRG 1100
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1101 FEVMYNGHTGRKLV--------------AQVFLGPTYYQRLRHMVDDKIHARARGPTQIL 1146
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
T +PV R R GG+ FGEM+ DC+IAHGAS L ERL
Sbjct: 1147 TRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERL 1183
>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
Length = 1921
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 166/404 (41%), Gaps = 106/404 (26%)
Query: 1 MNQASLECGVFRSESYKAE--------VDNKDIQVKSRPS--------------DDMLNF 38
+N+++++ G FRSE Y+ +D +++ K P DD L
Sbjct: 1538 LNESAIQRGFFRSEFYRTYKDQEARHGMDQEEVFEKPNPQQCQGMRHAIYDKLDDDGLIA 1597
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ D++IGK + D S+ ++ +E G+V +V+++ N++G
Sbjct: 1598 PGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMITWNNEG 1657
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + + +GDKF+S HGQKG G E P
Sbjct: 1658 NKFCKVRVRTT----KTPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 1713
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G +++G
Sbjct: 1714 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVRKISLLLQEYGYQHTG 1766
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1767 NEIMYNGFTGRKL--------------NSQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1812
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +A Q
Sbjct: 1813 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQ 1872
Query: 284 RVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
R Y CR C + I +PY KLL QEL SM I +
Sbjct: 1873 R--NKTYECRSCKNTTQISLVKLPYACKLLFQEL-MSMSIAPRM 1913
>gi|347522774|ref|YP_004780344.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
gi|343459656|gb|AEM38092.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
Length = 1168
Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats.
Identities = 104/338 (30%), Positives = 143/338 (42%), Gaps = 83/338 (24%)
Query: 40 KIQSKSGDIVIGKYA---------EIGA------DHSIKLKHTERGLVLKVLLSSNDDGK 84
+++ +SG+++IGK A EI D S+ ++H ERG V V ++ ++G
Sbjct: 839 EVEVESGEVLIGKTAPPKFSEEFREIAVSTERRRDESVSVRHGERGTVDTVFITETNEG- 897
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
F +V +R V + GDKF+S HGQKGV+GFL
Sbjct: 898 -FKLVKVR--VRDLRIPEFGDKFASRHGQKGVIGFLVPQYDMPFTEDGITPDLIINPHAF 954
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T QLLE GK A + ATPF E ++ +LL G G
Sbjct: 955 PSRMTLGQLLETIAGKVAALSARLIDATPF-------FKEPVENLQLELLK-YGFSPDGT 1006
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ ++R +F I +YQ+ HM DK+ R TG Q LT
Sbjct: 1007 EIMYDGRTGE--------------MLRHPVFIGIVYYQKLHHMVADKIHARATGQTQLLT 1052
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQR 284
+P R R GG+ FGEM+ DCL+ HGA+ L ER+ C ++A R
Sbjct: 1053 RQPTEGRARGGGLRFGEMERDCLVGHGAAMLLRERMLESSDKYVMYVCELCGHIA-WFDR 1111
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
C I I VPY KLL QEL SMGI
Sbjct: 1112 NRRAFVCPIHKEEGKISIVVVPYAFKLLLQEL-MSMGI 1148
>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
Length = 1171
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 169/408 (41%), Gaps = 114/408 (27%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPSDDMLN------FGKIQSK---- 44
MNQ+ ++ G+FRS Y+ A +DN + ++ +P+ D + + K+
Sbjct: 793 MNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIIS 852
Query: 45 -----SGD-IVIGKY-----AEIGADHSIK----------LKHTERGLVLKVLLSSNDDG 83
SGD ++IGK E D +IK L+ +E G+V +V+L+ N DG
Sbjct: 853 PGMRVSGDDVIIGKTISLPDTEDDLDATIKRYTKKDASTFLRSSETGIVDQVMLTLNTDG 912
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 913 NKFVKIRVRS----VRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHA 968
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 969 VPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISNLLQEYGYHLRG 1021
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSL---IFTWITFYQQFIHMSEDKVKFRNTGSF 233
++ + R L +F T+YQ+ HM +DK+ R G
Sbjct: 1022 NEIMYNGH-----------------TGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPV 1064
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----V 278
Q + +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N V
Sbjct: 1065 QMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVV 1124
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
AN+ C+ C + + +PY KLL QEL SM I +
Sbjct: 1125 ANLRTNSFE---CKACRNKTQVSAFRIPYACKLLFQEL-MSMSIAPRL 1168
>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 1222
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 165/406 (40%), Gaps = 116/406 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQS----KSG---------- 46
M+Q +++ G+FRS Y++ D + I+ + ++ KI+ KSG
Sbjct: 840 MSQDAIDRGLFRSVFYRSYKDEEKIKFGGQ--KEVFETPKIKDCVGFKSGSYTKLDLDGL 897
Query: 47 ----------DIVIGKYA------------------EIGADHSIKLKHTERGLVLKVLLS 78
DI+IGK + D S ++ E G+V KVL+
Sbjct: 898 ISEGTKVSGDDIIIGKTVPFNFFEAEYNLNSSERVYKFKKDSSTSVRSFESGIVDKVLIG 957
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ------TP-------- 124
+ D G + IR V +GDKF+S HGQKG++G L + TP
Sbjct: 958 TTDIGTKLVKIRIRS----VRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTPDGIIPEII 1013
Query: 125 ------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 171
LLE L K A G +PF+ + ITEQ + F +
Sbjct: 1014 MNPHAIPSRMTIGHLLECLLSKVAALGGFEGDGSPFSKISVEKITEQLEKFNYEKFGWEN 1073
Query: 172 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 231
N A L+ + IF T+YQ+ HM +DK+ R G
Sbjct: 1074 LANG----------------------ATGELLEAKIFIGPTYYQRLKHMVDDKIHSRARG 1111
Query: 232 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN-------------- 277
Q LT +PV R R GG+ FGEM+ DC+I+HGA+ L +RL ++
Sbjct: 1112 PVQILTRQPVEGRARDGGLRFGEMERDCMISHGAAVFLKDRLLDQSDAFTVFVCDFCGFI 1171
Query: 278 -VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
++N Q + C+ C + I + +PY KLL QEL SM I
Sbjct: 1172 AISNHKQNIYE---CKSCKPRNSISQIKIPYACKLLFQEL-MSMAI 1213
>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia malayi]
gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
[Brugia malayi]
Length = 1185
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 169/408 (41%), Gaps = 114/408 (27%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPSDDMLN------FGKIQSK---- 44
MNQ+ ++ G+FRS Y+ A +DN + ++ +P+ D + + K+
Sbjct: 807 MNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIIS 866
Query: 45 -----SGD-IVIGKY-----AEIGADHSIK----------LKHTERGLVLKVLLSSNDDG 83
SGD ++IGK E D +IK L+ +E G+V +V+L+ N DG
Sbjct: 867 PGMRVSGDDVIIGKTISLPDTEDDLDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDG 926
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 927 NKFVKIRVRS----VRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHA 982
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 983 VPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISNLLQEYGYHLRG 1035
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSL---IFTWITFYQQFIHMSEDKVKFRNTGSF 233
++ + R L +F T+YQ+ HM +DK+ R G
Sbjct: 1036 NEIMYNGH-----------------TGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPV 1078
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----V 278
Q + +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N V
Sbjct: 1079 QMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVV 1138
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
AN+ C+ C + + +PY KLL QEL SM I +
Sbjct: 1139 ANL---RTNSFECKACRNKTQVSAFRIPYACKLLFQEL-MSMSIAPRL 1182
>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
queenslandica]
Length = 1175
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 165/404 (40%), Gaps = 102/404 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPSDD----MLN--FGKIQS----- 43
MN ++++ G+FRS SYK E + +V +P+ D M N + K+
Sbjct: 795 MNASAIDRGLFRSVFYRSYKDEESKRGFDQEEVFEKPTRDTCAGMRNAAYDKLDEDGIIA 854
Query: 44 -----KSGDIVIGKYAEI--------GA-------DHSIKLKHTERGLVLKVLLSSNDDG 83
D +IGK + GA D S L+ +E G++ +V+LS N DG
Sbjct: 855 PGLRVSGNDAIIGKTISLPENDDELEGAPKRYQKRDASTFLRASETGIIDQVMLSLNQDG 914
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 915 YKFCKIRVRS----VRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHA 970
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S+LLN G
Sbjct: 971 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISELLNEYNYHLRG 1023
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1024 NEVLYNGHTGRKL--------------NTQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1069
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRV----------- 285
T +P+ R R GG+ FGEM+ DC IAHGA+ LHERL + A I
Sbjct: 1070 TRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLHERLYTVSDAYKIHLCNLCGLIAIANL 1129
Query: 286 -VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
CR C + I + +PY KLL QEL SM I + T
Sbjct: 1130 QTNSFECRGCKNKTQISQIEIPYACKLLFQEL-MSMSIAPRIMT 1172
>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
118893]
gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
118893]
Length = 1210
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 125/289 (43%), Gaps = 60/289 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 940 KVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGL 995
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y TPF GG E+ + +
Sbjct: 996 VPDIIMNPHGFPSRMTVGKMLELVAGKAGIVSGQFGYGTPF----GGSPVEEMSAILV-- 1049
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
N G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1050 -------NHGFSYGGKDYLTSGITGEPLTY---------YVFTGPIYYQKLKHMVQDKMH 1093
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + +
Sbjct: 1094 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1153
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+C+ C S+ ++K +PY AKLL QEL FSM + + Q
Sbjct: 1154 SCGFMGYSGWCQRCKSSAGVVKMVIPYAAKLLVQEL-FSMNVVARLRLQ 1201
>gi|308161806|gb|EFO64240.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia P15]
Length = 1239
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 144/342 (42%), Gaps = 77/342 (22%)
Query: 44 KSGDIVIGKYAEI--------GADHSIKLKHTERGL---------VLKVLLSSNDDGKNF 86
K+GDIVI K I G + ++ L + L + KVL+++N DG
Sbjct: 920 KTGDIVINKGRHITNIPGLSDGTEATVSLIKSPESLKSPLETTTYIDKVLVTTNGDGNML 979
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 120
V R+ +GDKFSS HGQKGV G +
Sbjct: 980 IKVLTREP----RRPEVGDKFSSRHGQKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPS 1035
Query: 121 EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
T A+LLE K C G + T F T T ++F+++L + + R +G ++
Sbjct: 1036 RMTVAKLLELLSNKSGCFRGEQTDGTCFRTKT-------DETFLAELYDSL--RVAGFSY 1086
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
K L D I IF +YQ+ HM +DK+ R TG LT +
Sbjct: 1087 SGKDVLYSGLTG---DVIPV------YIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQ 1137
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGP 289
P R+ GG+ GEM+ DC I++GAS L ER C+ G
Sbjct: 1138 PTEGRRVHGGLRMGEMERDCAISYGASALLLERFMLSSDDFLAYVCETCGLFSYEKNGAL 1197
Query: 290 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+C C S D++K +PY AKL+ QEL SMG+ ++ + S
Sbjct: 1198 WCPTCQSGKDVVKIRIPYAAKLMIQEL-ISMGVLVRMQLEDS 1238
>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
113480]
gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
113480]
Length = 1211
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 126/289 (43%), Gaps = 60/289 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 941 KVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGL 996
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y TPF GG E+ + +
Sbjct: 997 VPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTPF----GGSPVEEMSAILV-- 1050
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1051 -------DHGFSYGGKDYLTSGITGEPLTY---------YVFTGPIYYQKLKHMVQDKMH 1094
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + +
Sbjct: 1095 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1154
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
G +C+ C ++ ++K +PY AKLL QEL FSM + + Q
Sbjct: 1155 GCGFMGYSGWCQRCKTSAGVVKMVIPYAAKLLVQEL-FSMNVVARLRLQ 1202
>gi|449666447|ref|XP_002161911.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Hydra
magnipapillata]
Length = 1044
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 143/328 (43%), Gaps = 51/328 (15%)
Query: 44 KSGDIVIGKYAEIGADH-SIKLKHTERGLVLKVLLSSNDDG-KNFAVVSIRQSVNMVHSA 101
+ GD Y I ++ ++K KH E + + + +D G + VSI+ + +
Sbjct: 726 QHGDPYYSYYHIINGEYKTVKYKHMEPAYIDDIKILGSDKGDRELLKVSIKLRIQ--RNP 783
Query: 102 CLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQ 160
+GDKF+S HGQKG+L + PA+ + D + + + P + G +I +
Sbjct: 784 IIGDKFASRHGQKGILSV--KWPAENMPFTESGMIPDIIFNPHGFPSRMTIGMMI----E 837
Query: 161 SFVSQLLNCIGARNSGITFIFK------HYFLFCLFECPMDWIAFICLVRSL-------- 206
S + G + FIF HY L + ++ + +
Sbjct: 838 SMAGKSAALHGITHDSTPFIFSEEEPAAHYMGEILVKAGYNYYGNERMYSGINGKEMDVD 897
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
IF I +YQ+ HM DK + R+TG LT +PV RKR GGI FGEM+ D LIAHG+
Sbjct: 898 IFIGIVYYQRLRHMVADKYQVRSTGPVDNLTHQPVQGRKRQGGIRFGEMERDALIAHGSG 957
Query: 267 GNLHERL----------KCKNVANVIQRVVGGP---------------YCRICNSADDII 301
LH+RL C ++ +V P +CR+C DDI
Sbjct: 958 FLLHDRLFNCSDRCETHVCTKCGSIFTPIVRKPVTHHDSLIGFNDRKWFCRVCGHGDDIQ 1017
Query: 302 KANVPYGAKLLSQELSFSMGITLKFDTQ 329
K VPY K L EL+ +M I L D +
Sbjct: 1018 KMLVPYVFKYLIAELT-AMNIRLVLDVK 1044
>gi|171689286|ref|XP_001909583.1| hypothetical protein [Podospora anserina S mat+]
gi|170944605|emb|CAP70716.1| unnamed protein product [Podospora anserina S mat+]
Length = 1160
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 153/336 (45%), Gaps = 51/336 (15%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYA-------EIGADH--------SIKLKHTERGLVLKVLL 77
+D L ++ K GDI+I K IG D I K + +V KV++
Sbjct: 834 NDGLATPGMKMKDGDIMIMKETPVDQTSTNIGEDRKITEFRPCPISYKIKDPAIVDKVVI 893
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----AQLLEA 130
++ + G V RQ+ LGDKFSS HGQKGV+G + E P +
Sbjct: 894 TTKESGTPLLKVRTRQT----RRPELGDKFSSRHGQKGVVGIIVDQEDLPFSDKGLTPDI 949
Query: 131 ALGKGACDGLMSYATPFATSTG--GVITEQHQ-----SFVSQLLNCIGAR--NSGITFIF 181
+ M+ F TG V+ + + +F S + +G G ++
Sbjct: 950 IMNPHGFPSRMTVGKLFECLTGKASVVAGRREYGFGDAFRSHPVEEMGKVLIEHGFSWEG 1009
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
K YF + P + + +F FYQ+ HM DK+ R+ G LT +P
Sbjct: 1010 KDYFTSGITGEPHE---------AYLFNGPIFYQRLKHMVADKMHSRSRGPRAVLTRQPT 1060
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---VANVIQR--VVGGP-YCRICN 295
R R GG+ GEM+ DCLIA+GAS L ERL + +V +R ++G YC+ C
Sbjct: 1061 EGRSRDGGLRLGEMERDCLIAYGASQLLLERLMYSSDVTKVDVCERCGLMGYKGYCQTCK 1120
Query: 296 SADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 330
+ ++ K N+PY AKLL QEL S ++G+ ++ + Q
Sbjct: 1121 TTSNVTKMNMPYAAKLLLQELISMNVGVRMQLEDQF 1156
>gi|4867876|emb|CAB43078.1| RNA polymerase II [Ophiorrhiza mungos]
Length = 263
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 110/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 23 DHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 78
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 79 MTYTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 138
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 139 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 176
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 177 TYYQRLKHMVDDKIHSXGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 236
Query: 272 RL 273
RL
Sbjct: 237 RL 238
>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
Length = 1166
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 166/389 (42%), Gaps = 99/389 (25%)
Query: 1 MNQASLECGVFRSESYKA-----EVDNKDIQVKSRPS----------------DDMLNFG 39
MN+ S+E G+FRS Y++ + +I +PS DD +
Sbjct: 788 MNRYSVERGLFRSVFYRSYAASEHSERGEIIKIDKPSRENCIGMRRANYDKLEDDGIVAP 847
Query: 40 KIQSKSGDIVIGKYAEIGA-------------DHSIKLKHTERGLVLKVLLSSNDDGKNF 86
I+ D ++G+ E+ D S+ L+ +E G++ V++S N G+ F
Sbjct: 848 GIRVSGDDAIVGRLLELPEATRQASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKF 907
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 124
+ +R V + +GDKF+S HGQKG G E P
Sbjct: 908 VKIRVRS----VRTPQIGDKFASRHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPS 963
Query: 125 ----AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
L+E LGK A G + ATPF T+ + + V+ +L + G
Sbjct: 964 RMTIGHLIECLLGKSASHSGTIGDATPF--------TKVNVTDVADILEGYNFQRYGNEV 1015
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
++ + + ++ +F T+YQ+ HM +DK+ R G Q LT +
Sbjct: 1016 MYNGFTGRKM--------------QAQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQ 1061
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANV-IQRVVGGP-------- 289
P+ R R GG+ FGEM+ DC+IAHGA+ L ERL + + ++ + V G P
Sbjct: 1062 PMEGRSRDGGLRFGEMERDCMIAHGAAQFLRERLFEVSDPYSLHVCDVCGLPCVAKLEKN 1121
Query: 290 --YCRICNSADDIIKANVPYGAKLLSQEL 316
C C ++ + + +PY KLL QEL
Sbjct: 1122 EFECTRCRNSTRVSRIRLPYACKLLFQEL 1150
>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
Length = 1195
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 170/412 (41%), Gaps = 110/412 (26%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPS-----------------DDMLN 37
MN ++++ G+FRS Y+ A +DN + ++ +P+ D +++
Sbjct: 800 MNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHALYDKLDEDGIIS 859
Query: 38 FGKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDD 82
G ++ D++IGK + D S L+ +E G+V +V+LS N+D
Sbjct: 860 PG-MRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNND 918
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 919 GNKFVKIRMRS----VRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPH 974
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E GK A G + ATPF + + +S LL G
Sbjct: 975 AVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISGLLCEYGYHLR 1027
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + L + IF T+YQ+ HM +DK+ R G Q
Sbjct: 1028 GNEVMYNGHTGKKL--------------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQM 1073
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VAN 280
+ +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N VAN
Sbjct: 1074 MNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVAN 1133
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQLS 331
+ C+ C + + +PY KLL QEL S S+ L Q S
Sbjct: 1134 LRTNSFE---CKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPQTS 1182
>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma brucei
gambiense DAL972]
Length = 1189
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 167/406 (41%), Gaps = 109/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAE-------------VDNKDIQVKSRPSDDMLNFGKIQSK 44
M+++++E G FRS SYKA D K VK + G I+
Sbjct: 812 MSRSAVERGFFRSVFWRSYKASEEKKREGREMFEIPDRKVCHVKRADYTKLDTDGLIKPG 871
Query: 45 ----SGDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDGK 84
GDI++GK + D SI + E+G+V +V+L+ N G
Sbjct: 872 MPVIGGDIIVGKTIPVPKTLSEGSPVSDTRILKRDCSISSRAAEKGVVDRVMLTENK-GN 930
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 124
F V IR + +GDKF S HGQKG G E P
Sbjct: 931 RFTKVRIR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNHDGISPDLIINPHAI 986
Query: 125 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQL-LNCIGARN-- 174
A L+E GK AC G YATPF + V+ E ++QL LN G
Sbjct: 987 PSRMTVAHLIETLAGKVACYKGGEVYATPFCS----VVVEDFGKALTQLKLNRYGNERLY 1042
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
+G T + P+D LIF T+YQ+ H+S DK+ R G Q
Sbjct: 1043 NGHTGL------------PLD---------HLIFFGPTYYQRLKHLSSDKIHARPRGPLQ 1081
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANVIQRVVGG 288
PL +P R GG+ FGEM+ DC++++GAS L ERL +V N+ +
Sbjct: 1082 PLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICAA 1141
Query: 289 PY------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ C++ I + +PY KLL QEL SM I + T
Sbjct: 1142 DTDQNLYKCQGCDNDSHISQVLMPYACKLLFQEL-MSMAILPRLGT 1186
>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei TREU927]
gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei]
gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 1190
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 167/406 (41%), Gaps = 109/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAE-------------VDNKDIQVKSRPSDDMLNFGKIQSK 44
M+++++E G FRS SYKA D K VK + G I+
Sbjct: 813 MSRSAVERGFFRSVFWRSYKASEEKKREGREMFEIPDRKVCHVKRADYTKLDTDGLIKPG 872
Query: 45 ----SGDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDGK 84
GDI++GK + D SI + E+G+V +V+L+ N G
Sbjct: 873 MPVIGGDIIVGKTIPVPKTLSEESPVSDTRILKRDCSISSRAAEKGVVDRVMLTENK-GN 931
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 124
F V IR + +GDKF S HGQKG G E P
Sbjct: 932 RFTKVRIR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNHDGISPDLIINPHAI 987
Query: 125 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQL-LNCIGARN-- 174
A L+E GK AC G YATPF + V+ E ++QL LN G
Sbjct: 988 PSRMTVAHLIETLAGKVACYKGGEVYATPFCS----VVVEDFGKALTQLKLNRYGNERLY 1043
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
+G T + P+D LIF T+YQ+ H+S DK+ R G Q
Sbjct: 1044 NGHTGL------------PLD---------HLIFFGPTYYQRLKHLSSDKIHARPRGPLQ 1082
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANVIQRVVGG 288
PL +P R GG+ FGEM+ DC++++GAS L ERL +V N+ +
Sbjct: 1083 PLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICAA 1142
Query: 289 PY------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ C++ I + +PY KLL QEL SM I + T
Sbjct: 1143 DTDQNLYKCQGCDNDSHISQVLMPYACKLLFQEL-MSMAILPRLGT 1187
>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma mansoni]
Length = 1158
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 166/404 (41%), Gaps = 106/404 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNK--------DIQVKSRPS--------------DDMLNF 38
+N+++++ G FRSE Y+ D + ++ K P DD L
Sbjct: 775 INESAIQRGFFRSEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIA 834
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ D++IGK + D S+ ++ +E G+V +V+++ N++G
Sbjct: 835 PGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEG 894
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + + +GDKF+S HGQKG G E P
Sbjct: 895 NKFCKVRVRTT----KAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 950
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G +++G
Sbjct: 951 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVRKISLLLQEYGYQHTG 1003
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ R+ G Q L
Sbjct: 1004 NEIMYNGFTGRKL--------------NSQIFLGPTYYQRLKHMVDDKIHSRSRGPVQIL 1049
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +A Q
Sbjct: 1050 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQ 1109
Query: 284 RVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
R Y CR C + I +PY KLL QEL SM I +
Sbjct: 1110 R--NKTYECRSCKNTTQISLVKLPYACKLLFQEL-MSMSIAPRM 1150
>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
50818]
Length = 1193
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 178/410 (43%), Gaps = 110/410 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDN--KDIQVKSRPSDDML------NFGKIQ------- 42
MN+ +++ G+FRS SY + +N +++ +PS + N+GK++
Sbjct: 813 MNKCAVDRGLFRSVFYRSYASSEENTGREVIKFEKPSRETCAGMRNSNYGKLEDDGLIAP 872
Query: 43 --SKSGD-IVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDGK 84
S +GD +IG+ E+ D S+ L+ +E G++ +V+++ G
Sbjct: 873 GTSVTGDDAIIGRTMELPPNAEARDSRLARFEKLDKSVFLRASENGIIDQVMVAMGPKGT 932
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----------------- 124
F + +R + +GDKF+S HGQKG G E P
Sbjct: 933 RFVKIRVRS----IRVPQIGDKFASRHGQKGTCGMQYSQEDMPFTCQGITPDIIVNPHAI 988
Query: 125 ------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
L+E LGK C +G ATPF T V+++ + + A N
Sbjct: 989 PSRMTIGHLIECLLGKVGCLEGAFGDATPFIEVT-----------VNEVASALEAHN--- 1034
Query: 178 TFIFKHYFLFCLFECPMDWIAFICL-VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
F Y L+ F +++ +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1035 ---FHKYGNEVLYN------GFTGRKMQAQVFFGPTYYQRLKHMVDDKIHARARGPLQIL 1085
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANV 281
T +PV R R GG+ FGEM+ DC+IAHG++ L ERL C +AN+
Sbjct: 1086 TKQPVEGRSRDGGLRFGEMERDCMIAHGSAQFLRERLFEVSDPYRIHVCDICGLICIANL 1145
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ + + +PY KLL QEL SM I + T S
Sbjct: 1146 NKNELE---CKACSNTTRVSQVRIPYACKLLFQEL-MSMCIAPRIMTDNS 1191
>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
Length = 1207
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 168/406 (41%), Gaps = 110/406 (27%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPS-----------------DDMLN 37
MN ++++ G+FRS Y+ A +DN + ++ +P+ D +++
Sbjct: 816 MNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIIS 875
Query: 38 FGKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDD 82
G ++ D++IGK + D S L+ +E G+V +V+LS N+D
Sbjct: 876 PG-MRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNND 934
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 935 GNKFVKIRMRS----VRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPH 990
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E GK A G + ATPF + + +S LL G
Sbjct: 991 AVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISGLLCEYGYHLR 1043
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + L + IF T+YQ+ HM +DK+ R G Q
Sbjct: 1044 GNEVMYNGHTGKKL--------------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQM 1089
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VAN 280
+ +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N VAN
Sbjct: 1090 MNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVAN 1149
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ C+ C + + +PY KLL QEL SM I +
Sbjct: 1150 L---RTNSFECKACRNKTQVSAVRIPYACKLLFQEL-MSMSIAPRL 1191
>gi|297527625|ref|YP_003669649.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
12710]
gi|297256541|gb|ADI32750.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
12710]
Length = 1156
Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats.
Identities = 97/327 (29%), Positives = 139/327 (42%), Gaps = 80/327 (24%)
Query: 44 KSGDIVIGKYA----------EIGA-----DHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GD++IGK + +GA D S+ +H E+G+V V+++++ DG
Sbjct: 838 KGGDVLIGKISPPRFMTAQEYTVGAGITRQDASVVTRHGEKGIVDLVMVTTDIDGNRLVK 897
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQ 122
+R + LGDKF+S HGQKGV+G L
Sbjct: 898 ARVRD----LRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGIVPDLIINPHAFPSRM 953
Query: 123 TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
T QL+E+ GK A +G ATPF H+ + L+ IT +
Sbjct: 954 TVGQLIESIAGKAAALEGRFVDATPF-----------HKEPIENLM---------IT-LK 992
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
+H + +E D L ++ IF I +YQ+ HM DK+ R G Q LT +P
Sbjct: 993 RHGYPMSGYETMYDGRTGEIL-KTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPT 1051
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRVVGGP 289
R + GG+ FGEM+ DCL+ HGAS L E++ K+ I R+ G
Sbjct: 1052 EGRAKEGGLRFGEMEVDCLVGHGASLLLKEQMLDKSDKTTIYVCELCGHIGYYDRIRGKY 1111
Query: 290 YCRICNSADDIIKANVPYGAKLLSQEL 316
C I + V Y KLL QEL
Sbjct: 1112 VCPIHKDKGKLKPVKVSYAFKLLVQEL 1138
>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
Length = 1304
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 166/404 (41%), Gaps = 106/404 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNK--------DIQVKSRP--------------SDDMLNF 38
+N+++++ G FRSE Y+ D + ++ K P DD L
Sbjct: 921 INESAIQRGFFRSEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIA 980
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ D++IGK + D S+ ++ +E G+V +V+++ N++G
Sbjct: 981 PGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEG 1040
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + + +GDKF+S HGQKG G E P
Sbjct: 1041 NKFCKVRVRTT----KAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 1096
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G +++G
Sbjct: 1097 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVRKISLLLQEYGYQHTG 1149
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ R+ G Q L
Sbjct: 1150 NEIMYNGFTGRKL--------------NSQIFLGPTYYQRLKHMVDDKIHSRSRGPVQIL 1195
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +A Q
Sbjct: 1196 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQ 1255
Query: 284 RVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
R Y CR C + I +PY KLL QEL SM I +
Sbjct: 1256 R--NKTYECRSCKNTTQISLVKLPYACKLLFQEL-MSMSIAPRM 1296
>gi|294950795|ref|XP_002786777.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239901131|gb|EER18573.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 1140
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 141/328 (42%), Gaps = 70/328 (21%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIG----------ADHSIKLKHTERGLVLKVLLSSNDD 82
+D L F Q G I+I K + + D I K+ V +V+ + N+D
Sbjct: 825 EDGLPFSGEQVVDGGILINKVSPMSDAATGQVSHWRDTPISYKNPVPSYVDRVIATENED 884
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
RQ+ LGDKFSS HGQKGV+G + E P
Sbjct: 885 QAKIFKCITRQT----RRPELGDKFSSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPH 940
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
+LLE GK G DG SY T F G T++H ++Q L G S
Sbjct: 941 GFPSRMTVGKLLECVSGKAGVLDGERSYGTAF-----GGTTKEH---MTQSLIRHGFHPS 992
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
+I L EC IF +YQ+ HM DK+ R+TG
Sbjct: 993 AKEYITSGVTGEAL-EC-------------YIFVGPIYYQKLKHMVMDKIHARSTGPVNQ 1038
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---VANVIQRVVGGPY-- 290
LT +P R + GG+ GEM+ DCL+A+GAS L ERL + A+V +R Y
Sbjct: 1039 LTRQPTEGRAKDGGLRLGEMERDCLVAYGASNLLLERLMLSSDVFTASVCRRCGLLSYQN 1098
Query: 291 --CRICNSADDIIKANVPYGAKLLSQEL 316
C++C ++++I+ +PY KLL QEL
Sbjct: 1099 GTCKLCGTSENIVDIRMPYACKLLFQEL 1126
>gi|253741841|gb|EES98701.1| DNA-directed RNA polymerase subunit B' [Giardia intestinalis ATCC
50581]
Length = 1239
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 144/342 (42%), Gaps = 77/342 (22%)
Query: 44 KSGDIVIGK---------------YAE--IGADHSIKLKHTERGLVLKVLLSSNDDGKNF 86
K+GDIVI K AE I + S+K + KVL+++N+DG
Sbjct: 920 KTGDIVINKGRHVTNIPGLSDGPEAAETLIKSPESLKSPLETITYIDKVLVTTNNDGNLL 979
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 120
V R+ +GDKFSS HGQKGV G +
Sbjct: 980 IKVLTREP----RRPEVGDKFSSRHGQKGVCGLIVSQSDLPFTSQGIVPDLIMNPHGYPS 1035
Query: 121 EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
T A+LLE K +C G + T F T T + F+++L + + R +G ++
Sbjct: 1036 RMTVAKLLELLSNKSSCFRGEQTDGTCFRTKT-------DEEFIAELYDSL--RAAGFSY 1086
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
K L D I IF +YQ+ HM +DK+ R TG LT +
Sbjct: 1087 SGKDVLYSGLTG---DVIPV------YIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQ 1137
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGP 289
P R+ GG+ GEM+ DC I++GAS L ER C+ G
Sbjct: 1138 PTEGRRVHGGLRMGEMERDCAISYGASALLLERFMLSSDEFLAYVCEACGLFSYERNGAL 1197
Query: 290 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+C C S D++K +PY AKL+ QEL SMG+ ++ + S
Sbjct: 1198 WCPTCQSGKDVVKIRIPYAAKLMIQEL-ISMGVLVRMQLEDS 1238
>gi|294953589|ref|XP_002787839.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239902863|gb|EER19635.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 1159
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 141/328 (42%), Gaps = 70/328 (21%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIG----------ADHSIKLKHTERGLVLKVLLSSNDD 82
+D L F Q G I+I K + + D I K+ V +V+ + N+D
Sbjct: 844 EDGLPFSGEQVVDGGILINKVSPMSDAATGQVSHWRDTPISYKNPVPSYVDRVIATENED 903
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
RQ+ LGDKFSS HGQKGV+G + E P
Sbjct: 904 QAKIFKCITRQT----RRPELGDKFSSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPH 959
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
+LLE GK G DG SY T F G T++H ++Q L G S
Sbjct: 960 GFPSRMTVGKLLECVSGKAGVLDGERSYGTAF-----GGTTKEH---MTQSLIRHGFHPS 1011
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
+I L EC IF +YQ+ HM DK+ R+TG
Sbjct: 1012 AKEYITSGVTGEAL-EC-------------YIFVGPIYYQKLKHMVMDKIHARSTGPVNQ 1057
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---VANVIQRVVGGPY-- 290
LT +P R + GG+ GEM+ DCL+A+GAS L ERL + A+V +R Y
Sbjct: 1058 LTRQPTEGRAKDGGLRLGEMERDCLVAYGASNLLLERLMLSSDVFTASVCRRCGLLSYQN 1117
Query: 291 --CRICNSADDIIKANVPYGAKLLSQEL 316
C++C ++++I+ +PY KLL QEL
Sbjct: 1118 GTCKLCGTSENIVDIRMPYACKLLFQEL 1145
>gi|336253134|ref|YP_004596241.1| DNA-directed RNA polymerase subunit B [Halopiger xanaduensis SH-6]
gi|242392250|dbj|BAH80362.1| RNA polymerase subunit B' [Halopiger xanaduensis SH-6]
gi|335337123|gb|AEH36362.1| DNA-directed RNA polymerase subunit B [Halopiger xanaduensis SH-6]
Length = 609
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 130/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E+ L L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTESGLVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSLEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + FE + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDKLREGLEEAGFESSGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREYIPICANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
Length = 1182
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 172/403 (42%), Gaps = 104/403 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPSDDML------NFGK-------- 40
MN ++++ G++RS SY+ + K + + +P+ D + ++ K
Sbjct: 800 MNASAIDRGLYRSVFYRSYRDQESKKGLDQEETFEKPTRDAVQGMRNASYDKLDEDGLIA 859
Query: 41 --IQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+++GK + D S L+ +E G+V +V+++ N +G
Sbjct: 860 PGIRVSGDDVIVGKTVTLPDNDDELEGTARKYSKKDASTFLRPSETGIVDQVMVTINQEG 919
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 920 FKFTKIKVRS----VRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHA 975
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +SQLLN G G
Sbjct: 976 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISQLLNDYGYHLRG 1028
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1029 NEVLYSGFTGRKL--------------NTQVFLGPTYYQRLKHMVDDKIHSRARGPLQIL 1074
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------KCKNVANV-----IQR 284
T +P+ R R GG+ FGEM+ DC+IAHG++ L+ERL C +V N+ I
Sbjct: 1075 TRQPMEGRSRDGGLRFGEMERDCMIAHGSAQFLNERLFEVSDPYSC-HVCNLCGLIAIAN 1133
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ + CR C + + + +PY AKLL QEL SM I +
Sbjct: 1134 LRNNTFECRGCKNKTQVSRIRMPYAAKLLFQEL-MSMSIAPRM 1175
>gi|452845424|gb|EME47357.1| hypothetical protein DOTSEDRAFT_125117 [Dothistroma septosporum
NZE10]
Length = 1147
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 134/290 (46%), Gaps = 60/290 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++++N+ + RQ+ +GDKFSS HGQKGV+G L +
Sbjct: 879 KVMVTANEANSTIIKIQTRQT----RRPEIGDKFSSRHGQKGVVGLLAEQADMPFSDQGV 934
Query: 123 ---------------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
T ++LE GK G+++ + T+ GG E
Sbjct: 935 VPDIIMNPHGFPSRMTVGKMLELVSGKA---GVLAGKHEYGTAFGGSKVE---------- 981
Query: 168 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
+ G T + KH F + +C I L + F I +YQ+ HM +DK+
Sbjct: 982 ------DMGRTLV-KHGFSYSGKDCLTSGITGESLPMYVFFGPI-YYQKLKHMVQDKMHS 1033
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RV 285
R+TG LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A+ + +V
Sbjct: 1034 RSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLERLMISSDAHEVDVCQV 1093
Query: 286 VG----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
G +C+ C+S +++ +PY AKLL QEL M + +K QL+
Sbjct: 1094 CGMMGYNGWCQSCSSTRSVVRMTMPYAAKLLIQEL---MSMNVKASLQLA 1140
>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
Length = 1141
Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats.
Identities = 111/397 (27%), Positives = 165/397 (41%), Gaps = 102/397 (25%)
Query: 1 MNQASLECGVFRS----------------ESYKAEVDNKDIQVKSRPS------DDMLNF 38
+N++S+E G++RS E + E+ + +++ P +D +
Sbjct: 757 LNRSSIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPSAEVRGYKGPEAYAHLDEDGIVS 816
Query: 39 GKIQSKSGDIVIGK---------YAEIGA-----DHSIKLKHTERGLVLKVLLSSNDDGK 84
++ G+++IGK Y E D SI ++ E+G+V V+++ ++G
Sbjct: 817 PEVFVSGGEVLIGKTSPPRFYGVYTEAVVSSARRDSSITVRRGEKGIVDSVVITETNEGY 876
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R+ + LGDKF+S HGQKGV+G +
Sbjct: 877 KLVKVKVRE----LRIPELGDKFASRHGQKGVMGMMIPMQDMPFTEDGITPDIIVNPHAL 932
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T QLLE+ GK A GL ATPF GV E+ + LL G R G
Sbjct: 933 PSRMTVGQLLESMAGKVAALRGLTIDATPFE----GVTEEE----LRDLLIRSGFRWDGK 984
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ L + IF + +YQ+ HM DK+ R G Q LT
Sbjct: 985 EVMYSGLTGRKL--------------EADIFIGVVYYQKLHHMVADKIHARARGPVQILT 1030
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANV--IQRV 285
+P R R GG+ GEM+ D LIAHGA+ L ERL C++ +
Sbjct: 1031 RQPTEGRSREGGLRLGEMERDVLIAHGAAALLKERLVESSDKYVMYVCEDCGMIAWYDAN 1090
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
G P C I I++ VPY KLL EL S+GI
Sbjct: 1091 KGKPVCPIHGDKGRIVRIVVPYAFKLLLHEL-MSLGI 1126
>gi|242006406|ref|XP_002424041.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212507347|gb|EEB11303.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 1137
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 131/304 (43%), Gaps = 66/304 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D + K E + KVL+S+N D + + +RQ+ +GDKFSS HGQKGV+G
Sbjct: 856 DTPVDYKGLEHSYIDKVLISTNSDDDSLIKIKLRQT----RIPEIGDKFSSRHGQKGVVG 911
Query: 119 FL-EQ-------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ EQ T +L+E GK G G Y T F ST
Sbjct: 912 LIVEQENMPFNESGICPDVIMNPHGFPSRMTVGKLIELLAGKAGVVTGKHHYGTAFGGST 971
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
++E + V N G SGIT PM+ +++
Sbjct: 972 ---VSEVQEELVKNKFNYEGKDILYSGIT------------GEPME---------VYVYS 1007
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
FYQ+ HM +DK+ R G LT +P R GG+ GEM+ DCLIA+GAS +
Sbjct: 1008 GPVFYQRLKHMVQDKIHARARGPRAVLTRQPTEGRAADGGLRLGEMERDCLIAYGASSMI 1067
Query: 270 HERL-------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
ERL +C +V N + +C C S+ +I +PY KLL QEL SM I
Sbjct: 1068 SERLMISSDAFQC-DVCNECGLIAYSKWCHGCKSSKEISTIKLPYATKLLFQELR-SMNI 1125
Query: 323 TLKF 326
+
Sbjct: 1126 VPRL 1129
>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
Length = 1147
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 163/399 (40%), Gaps = 115/399 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDI--------QVKSRPSDDML------NFGKI----- 41
MNQA+++ G+FRS Y+ VD + I + RP+ D ++ K+
Sbjct: 743 MNQAAIDRGLFRSTFYRTYVDQESIRGLGEAFHETFERPTRDQCTAMRHGSYDKVDCDGL 802
Query: 42 -----QSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSND 81
+ DI+IGK A D S ++ E GLV +V+LS+N
Sbjct: 803 VAPGLRVSGADILIGKTAPTTPLGMDGNLNHCQFTKQDSSTAMRPNESGLVDQVMLSTNQ 862
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 124
+G F V R + +GDKF+S HGQKG +G E P
Sbjct: 863 EGMKFTKVRTR----TIRIPQIGDKFASRHGQKGTIGMTYSQEDMPWTRDGVSPDIVVNP 918
Query: 125 ---------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
L+E K GA G ATPF V +Q ++ +L+ +G
Sbjct: 919 HAIPSRMTIGHLVECLQSKVGALTGKEGDATPFT----DVSVDQ----IAGVLHELGYHR 970
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
G ++ + ++ + +F TFYQ+ H+ +DK+ R+ G
Sbjct: 971 HGNEVMYSGHTGR--------------MIHAKVFLGPTFYQRLKHLVDDKIHARSRGPVT 1016
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANV 281
LT +P+ R R GG+ GEM+ DCL++HG S L +R+ C +A+
Sbjct: 1017 MLTRQPMEGRARDGGLRMGEMERDCLVSHGVSSFLRDRMFANSDPYAVHVCTSCGMIAHA 1076
Query: 282 IQRVVGGPYCRICNSAD------DIIKANVPYGAKLLSQ 314
R + CN+ D I++ ++PY KLL Q
Sbjct: 1077 DLR----KHLYWCNNKDCQHAKARIVRVHIPYACKLLFQ 1111
>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
Length = 1210
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 125/289 (43%), Gaps = 60/289 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 940 KVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGL 995
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y TPF GG E+ + +
Sbjct: 996 VPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTPF----GGSPVEEMSAILV-- 1049
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1050 -------DHGFSYGGKDYLTSGITGEPLTY---------YVFTGPIYYQKLKHMVQDKMH 1093
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + +
Sbjct: 1094 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1153
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+C+ C S+ ++K +PY AKLL QEL FSM + + Q
Sbjct: 1154 SCGFMGYSSWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSMNVVARLRLQ 1201
>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
CBS 127.97]
Length = 1210
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 125/289 (43%), Gaps = 60/289 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 940 KVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGL 995
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y TPF GG E+ + +
Sbjct: 996 VPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTPF----GGSPVEEMSAILV-- 1049
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1050 -------DHGFSYGGKDYLTSGITGEPLTY---------YVFTGPIYYQKLKHMVQDKMH 1093
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + +
Sbjct: 1094 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1153
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+C+ C S+ ++K +PY AKLL QEL FSM + + Q
Sbjct: 1154 SCGFMGYSSWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSMNVVARLRLQ 1201
>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2
gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
Length = 1193
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 167/406 (41%), Gaps = 110/406 (27%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPS-----------------DDMLN 37
MN ++++ G+FRS Y+ A +DN + ++ +P+ D +++
Sbjct: 802 MNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIIS 861
Query: 38 FGKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDD 82
G ++ D++IGK + D S L+ +E G+V +V+LS N D
Sbjct: 862 PG-MRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSD 920
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 921 GNKFVKIRMRS----VRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPH 976
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E GK A G + ATPF + + +S LL G
Sbjct: 977 AVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISGLLCEYGYHLR 1029
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + L + IF T+YQ+ HM +DK+ R G Q
Sbjct: 1030 GNEVMYNGHTGKKL--------------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQM 1075
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VAN 280
+ +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N VAN
Sbjct: 1076 MNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVAN 1135
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ C+ C + + +PY KLL QEL SM I +
Sbjct: 1136 L---RTNSFECKACRNKTQVSAVRIPYACKLLFQEL-MSMSIAPRL 1177
>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
Length = 1234
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 168/415 (40%), Gaps = 117/415 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNK----------------DIQVKSRPSDDM---LNFGKI 41
MNQ++++ G+FRS Y+ VD + + + +PS D L G
Sbjct: 834 MNQSAIDRGLFRSTFYRCYVDQERNKSPHGGSAATALVSNCEEFEKPSRDNCLGLRHGSY 893
Query: 42 QS-------------KSGDIVIGKYAE--IGADHSIKLKHTER-----------GLVLKV 75
DI+IGK + + D S++ +H +R G++ V
Sbjct: 894 HKLDADGLVAPGTRVSGNDIIIGKTSPLPVSEDSSLEQRHQKRDASTSLRSHENGIIDSV 953
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------- 124
+L++N DG F V R + +GDKF+S HGQKG +G E P
Sbjct: 954 MLTTNADGFKFTKVRFRN----IRIPQIGDKFASRHGQKGTIGMTYRQEDMPFTLEGITP 1009
Query: 125 ---------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLN 168
L+E LGK + G ATPF T I + L+
Sbjct: 1010 DIIVNPHAIPSRMTVGHLIECLLGKVSSQTGDEGDATPFTDVTVQAIAD--------TLH 1061
Query: 169 CIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
+G + G ++ + L + IF TFYQ+ HM +DK+ R
Sbjct: 1062 NLGYQRHGNEVLYSGHTGRPL--------------TAQIFIGPTFYQRLKHMVDDKIHSR 1107
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN----------- 277
+ G LT +P+ R R GG+ GEM+ DCLI+HG++ L +RL +
Sbjct: 1108 SRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDIC 1167
Query: 278 ----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+AN+ + CR C + I + ++PY KLL QEL SM I + T
Sbjct: 1168 GIIAIANLRKMTFE---CRNCRNKTQISQLHIPYSCKLLFQEL-MSMSIAPRLFT 1218
>gi|242392344|dbj|BAH80385.1| RNA polymerase subunit B' [Haloterrigena saccharevitans]
Length = 609
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ K L E D + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDKDELREGLEEAGFDSAGKETMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|433592803|ref|YP_007282299.1| DNA-directed RNA polymerase subunit B [Natrinema pellirubrum DSM
15624]
gi|448335248|ref|ZP_21524398.1| DNA-directed RNA polymerase subunit B' [Natrinema pellirubrum DSM
15624]
gi|242392374|dbj|BAH80400.1| RNA polymerase subunit B' [Natrinema pellirubrum DSM 15624]
gi|433307583|gb|AGB33395.1| DNA-directed RNA polymerase subunit B [Natrinema pellirubrum DSM
15624]
gi|445617629|gb|ELY71223.1| DNA-directed RNA polymerase subunit B' [Natrinema pellirubrum DSM
15624]
Length = 609
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ K L E D + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDKDELREGLEEAGFDSAGKETMYSGITGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|448383940|ref|ZP_21562938.1| DNA-directed RNA polymerase subunit B' [Haloterrigena
thermotolerans DSM 11522]
gi|242392346|dbj|BAH80386.1| RNA polymerase subunit B' [Haloterrigena thermotolerans]
gi|242392348|dbj|BAH80387.1| RNA polymerase subunit B' [Haloterrigena turkmenica]
gi|445658929|gb|ELZ11741.1| DNA-directed RNA polymerase subunit B' [Haloterrigena
thermotolerans DSM 11522]
Length = 609
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ K L E D + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDKDELREGLEEAGFDSAGKETMYSGITGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1185
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 169/406 (41%), Gaps = 108/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAE-----------VDNKDIQV-------KSRPSDDMLNFG 39
M+++++E G FRS S+KA+ +N D +V S+ D L
Sbjct: 807 MSRSAVERGFFRSAFWRSFKAKEERQKRDALETFENPDREVCRVKRADYSKLDTDGLIKP 866
Query: 40 KIQSKSGDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ GD+V+GK + D SI + TE+G+V KV+L+ N++
Sbjct: 867 GMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRATEKGVVDKVMLTMNNND 926
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V IR + +GDKF S HGQKG G E P
Sbjct: 927 R-FTKVKIR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHA 981
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLL--NCIGARN 174
A L+E GK AC G YATPF + + + SQ C+ +
Sbjct: 982 IPSRMTVAHLIETLAGKVACYKGGEVYATPFCSVVVDDFGKALHALRSQRYGNECLYNGH 1041
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
+G+ P+D LIF TFYQ+ H+S DK+ R G Q
Sbjct: 1042 TGL---------------PLD---------HLIFFGPTFYQRLKHLSGDKIHARPRGPLQ 1077
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVAN------VI 282
PL +P R GG+ FGEM+ DC++++GAS L ERL +V N V
Sbjct: 1078 PLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTICVA 1137
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+ C+ C + I + +PY KLL QEL SM I + T
Sbjct: 1138 DTKLNRYQCKGCENDTRISQVLMPYACKLLFQEL-MSMTILPRLGT 1182
>gi|159119582|ref|XP_001710009.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia ATCC 50803]
gi|157438127|gb|EDO82335.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
Length = 1238
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 142/342 (41%), Gaps = 77/342 (22%)
Query: 44 KSGDIVIGK-----------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNF 86
K+GDIVI K + I A S+K V KVL+++N DG
Sbjct: 919 KTGDIVINKGRHITNIPGLSDGTEATASLIKAPESLKSPLETITYVDKVLVTTNGDGNML 978
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-------------------------- 120
V R+ +GDKFSS HGQKGV G +
Sbjct: 979 IKVLTREP----RRPEVGDKFSSRHGQKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPS 1034
Query: 121 EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
T A+LLE K C G + T F T T ++F+++L + + R +G ++
Sbjct: 1035 RMTVAKLLELLSNKSGCFRGEQTDGTCFRTKT-------DETFLAELYDSL--RVAGFSY 1085
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
K L D I IF +YQ+ HM +DK+ R TG LT +
Sbjct: 1086 SGKDVLYSGLTG---DVIPV------YIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQ 1136
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGP 289
P R+ GG+ GEM+ DC I++GAS L ER C+ G
Sbjct: 1137 PTEGRRVHGGLRMGEMERDCAISYGASALLLERFMLSSDDFLAYVCETCGLFSYEKNGVL 1196
Query: 290 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+C C S D++K +PY AKL+ QEL SMG+ ++ + S
Sbjct: 1197 WCPTCQSGKDVVKIRIPYAAKLMIQEL-ISMGVLVRMQLEDS 1237
>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
Length = 1210
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 125/289 (43%), Gaps = 60/289 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 940 KVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGL 995
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y TPF GG E+ + +
Sbjct: 996 VPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTPF----GGSPVEEMSAILV-- 1049
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1050 -------DHGFSYGGKDYLTSGITGEPLTY---------YVFTGPIYYQKLKHMVQDKMH 1093
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + +
Sbjct: 1094 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1153
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+C+ C S+ ++K +PY AKLL QEL FSM + + Q
Sbjct: 1154 SCGFMGYSGWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSMNVVARLRLQ 1201
>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
Length = 1130
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 131/307 (42%), Gaps = 66/307 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ L+H E+G++ +V + + G A V +R + LGDKF+S HGQKGV+G
Sbjct: 843 DTSLLLRHGEKGIIDRVFIMESPGGIKLAKVRVRD----LRPTELGDKFASRHGQKGVVG 898
Query: 119 FL---EQTP-----------------------AQLLEAALGKGAC-DGLMSYATPFATST 151
L E P QLLEA GK A G AT F +
Sbjct: 899 MLVPQEDMPFTEEGITPDLIINPHAIPSRMTVGQLLEAITGKAAALAGRRIDATAFEPPS 958
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
I E +L G R+ G ++ D + L + IF +
Sbjct: 959 LDEIRE--------ILRSYGFRSDGKEVLY-------------DGVTGEKL-EAEIFIGV 996
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+Y++ H+ DK+ R G Q LT +P R R GG+ FGEM+ DCL+ HGAS L E
Sbjct: 997 VYYEKLHHLVADKMHARARGRVQILTRQPTEGRAREGGLRFGEMEKDCLVGHGASMLLRE 1056
Query: 272 RL----------KCKNVANV--IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFS 319
RL C+N + P C +C + V Y KLL QEL+
Sbjct: 1057 RLLESSDKTTIWVCENCGYMGWFDARKNTPVCPVCGDKGRLSPVEVSYAFKLLLQELT-G 1115
Query: 320 MGITLKF 326
+G++++
Sbjct: 1116 LGLSVRL 1122
>gi|452986015|gb|EME85771.1| hypothetical protein MYCFIDRAFT_40745, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1132
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 127/291 (43%), Gaps = 62/291 (21%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++++N+ + RQ+ +GDKFSS HGQKGV+G L +
Sbjct: 864 KVMITANEANTTILKIQTRQT----RRPEIGDKFSSRHGQKGVVGLLAEQADMPFSDSGV 919
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y TPF GG E S + +
Sbjct: 920 VPDIIMNPHGFPSRMTVGKMLELVSGKAGVLTGKQEYGTPF----GGSKVEDMGSILVKH 975
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
++ + I F +F P+ +YQ+ HM +DK+
Sbjct: 976 GFSYSGKDHLTSGITGESLPFYVFFGPI------------------YYQKLKHMVQDKMH 1017
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R+TG LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A+ +
Sbjct: 1018 SRSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLERLMISSDAHDVDVCQ 1077
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
G +C+ C S+ + K +PY AKLL QEL M + +K QL+
Sbjct: 1078 GCGMMGYNGWCQSCGSSRGVTKMTMPYAAKLLIQEL---MSMNVKASLQLA 1125
>gi|68490742|ref|XP_710813.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
gi|68490765|ref|XP_710802.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
gi|46432047|gb|EAK91554.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
gi|46432059|gb|EAK91565.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
gi|238879996|gb|EEQ43634.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida albicans
WO-1]
Length = 1157
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 142/324 (43%), Gaps = 65/324 (20%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
+ + SGD +G E A S + K E + +V++S +D+ + V +RQ+
Sbjct: 855 VPTNSGDSTLGAQQEQRAAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQT- 913
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLE 129
LGDKFSS HGQKGV G + Q T +++E
Sbjct: 914 ---RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIE 970
Query: 130 AALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 188
GK G +G + Y T F GG E +S++L G SG ++ C
Sbjct: 971 LISGKAGVLNGSLEYGTCF----GGSKLED----MSKILIEKGFSYSGKDMLYSGITGEC 1022
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
L ++ IF +YQ+ HM DK+ R G LT +P R R G
Sbjct: 1023 L--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDG 1068
Query: 249 GIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIK 302
G+ GEM+ DC+IA+GAS L ERL +V N + +C C S++++IK
Sbjct: 1069 GLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSSENVIK 1128
Query: 303 ANVPYGAKLLSQELSFSMGITLKF 326
+PY AKLL QEL SM I +
Sbjct: 1129 MTIPYAAKLLFQEL-LSMNIAPRL 1151
>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
Length = 1196
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 125/289 (43%), Gaps = 60/289 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 926 KVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGL 981
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y TPF GG E+ + +
Sbjct: 982 VPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTPF----GGSPVEEMSAILV-- 1035
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1036 -------DHGFSYGGKDYLTSGITGEPLTY---------YVFTGPIYYQKLKHMVQDKMH 1079
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + +
Sbjct: 1080 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1139
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+C+ C S+ ++K +PY AKLL QEL FSM + + Q
Sbjct: 1140 SCGFMGYSGWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSMNVVARLRLQ 1187
>gi|4867895|emb|CAB43089.1| RNA polymerase II [Wrightia arborea]
Length = 249
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 110/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
+HS L+H+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 9 NHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 64
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 65 MTYTQEDMPFTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 124
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 125 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 162
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L
Sbjct: 163 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKX 222
Query: 272 RL 273
RL
Sbjct: 223 RL 224
>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis KIN4/I]
gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
KIN4/I]
Length = 1132
Score = 107 bits (268), Expect = 7e-21, Method: Composition-based stats.
Identities = 109/408 (26%), Positives = 169/408 (41%), Gaps = 113/408 (27%)
Query: 1 MNQASLECG--------VFRSESYKAEVDNKDIQVKSRPSDDMLNF------------GK 40
MNQ+S++ G ++++E K +D K +P ++ G
Sbjct: 747 MNQSSIDRGFMRATFMRLYQTEEQKYPGGAEDKIEKPKPDQRLVGMREPKAYEKLDEDGI 806
Query: 41 IQSKS----GDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSND 81
++ ++ GD++IGK Y E+G D S+ ++H E G+V V+L+ N
Sbjct: 807 VEPETYVVGGDVLIGKSSPPRFTEEYKEMGILETRRRDASVAVRHGEEGVVDTVILTENI 866
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLM 141
DG V +R + +GDKF+S HGQKGV+G + L
Sbjct: 867 DGIKMVKVRVRS----LRIPEIGDKFASRHGQKGVIGMV-------------------LP 903
Query: 142 SYATPFATS--TGGVITEQH----QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 195
Y P++ +I H + + QL+ I A+ + F + ++ P+D
Sbjct: 904 HYDMPYSEFGLVPDIILNPHAFPSRMTLGQLIESIAAKAAA--FRGREVDATPFYKEPLD 961
Query: 196 WIAFICLVRSL--------------------IFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
+ I + R +F + FYQ+ HM DK+ R G Q
Sbjct: 962 NLRKILVERGFPPDGTEVMFDGRTGEMIARPVFIGVVFYQRLYHMVSDKIHARARGPVQI 1021
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNV---- 278
LT +P R R GG+ FGEM+ D L+AHGAS L ERL KC ++
Sbjct: 1022 LTRQPTEGRTRKGGLRFGEMERDVLVAHGASQLLVERLLKSSDATKVWVCAKCGHIGWWD 1081
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
AN G P C I ++ + + Y KLL QE+ SMGI +
Sbjct: 1082 AN-----KGKPVCPIHGERGEMYQVELSYAFKLLIQEI-LSMGIAARL 1123
>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
Length = 1181
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 113/407 (27%), Positives = 169/407 (41%), Gaps = 110/407 (27%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKD---IQVKSRPSDDM-----LNFGKIQSKS---- 45
M+++++E G FRS S+KA+ + + ++ P ++ ++ K+ +
Sbjct: 803 MSRSAVERGFFRSAFWRSFKAKEERQKRDALETFENPDRELCRVKRADYSKLDTDGLIKP 862
Query: 46 ------GDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDG 83
GD+V+GK + D SI + TE+G+V KV+L+ N++
Sbjct: 863 GMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRTTEKGVVDKVMLTMNNND 922
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V IR + +GDKF S HGQKG G E P
Sbjct: 923 R-FTKVKIR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHA 977
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLL--NCIGARN 174
A L+E GK AC G YATPF + + + SQ C+ +
Sbjct: 978 IPSRMTVAHLIETLAGKVACYKGGEVYATPFCSVVVDDFGKALHALRSQRYGNECLYNGH 1037
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
+G+ P+D LIF TFYQ+ H+S DK+ R G Q
Sbjct: 1038 TGL---------------PLD---------HLIFFGPTFYQRLKHLSGDKIHARPRGPLQ 1073
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANV 281
PL +P R GG+ FGEM+ DC++++GAS L ERL C + V
Sbjct: 1074 PLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTIC-V 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+ C+ C + I + +PY KLL QEL SM I + T
Sbjct: 1133 ADTKLNRYQCKGCENDTRISQVLMPYACKLLFQEL-MSMTILPRLGT 1178
>gi|402076059|gb|EJT71482.1| hypothetical protein GGTG_10739 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1158
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 137/295 (46%), Gaps = 36/295 (12%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 873 DTSISYRTPDPSYIDKVMVSQTEKEHILVKVQTRQT----RRPELGDKFSSRHGQKGVVG 928
Query: 119 FL---EQTPAQ----LLEAALGKGACDGLMSYATPFATSTG--GVITEQHQ-----SFVS 164
+ E P Q + + + M+ F TG V+ + + +F +
Sbjct: 929 IIVDQEDMPFQDSGLVPDIIMNPHGFPSRMTVGKLFECLTGKASVVEGEKRYGYGDAFRT 988
Query: 165 QLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 222
+ +G G ++ K YF + P++ + IF +YQ+ HM +
Sbjct: 989 HPVEEMGEALVRHGFSWEGKDYFTSGITGEPLE---------AYIFNGPIYYQRLKHMVQ 1039
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI 282
DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A I
Sbjct: 1040 DKMHSRAKGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDATSI 1099
Query: 283 ---QR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 330
QR + G YC+ C S ++ +PY AKLL QEL S ++G+ L+ + +
Sbjct: 1100 DICQRCGLFGYKGYCQTCKSTREVTAMTMPYAAKLLVQELISMNVGVRLQLEDEF 1154
>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
Length = 1196
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 125/289 (43%), Gaps = 60/289 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 926 KVMISTTEGESQLIKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGL 981
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y TPF GG E+ + +
Sbjct: 982 VPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQFGYGTPF----GGSPVEEMSAILV-- 1035
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1036 -------DHGFSYGGKDYLTSGITGEPLTY---------YVFTGPIYYQKLKHMVQDKMH 1079
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + +
Sbjct: 1080 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1139
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+C+ C S+ ++K +PY AKLL QEL FSM + + Q
Sbjct: 1140 SCGFMGYSGWCQRCKSSVGVVKMVIPYAAKLLVQEL-FSMNVVARLRLQ 1187
>gi|403213510|emb|CCK68012.1| hypothetical protein KNAG_0A03250 [Kazachstania naganishii CBS 8797]
Length = 1155
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 130/290 (44%), Gaps = 64/290 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
+V++S +D+ + V +RQS LGDKFSS HGQKGV G + Q
Sbjct: 889 QVMMSVSDNDQALIKVLLRQS----RRPELGDKFSSRHGQKGVCGIIVQQEDMPFSDQGV 944
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T +++E GK G +G + Y T F G + + + V Q
Sbjct: 945 VPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQG 1001
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SG+T EC +++ IF +YQ+ HM DK
Sbjct: 1002 FNYSGKDMLYSGVTG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1040
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NV 278
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL +V
Sbjct: 1041 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1100
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKFD 327
N + +C C SA+++IK +PY AKLL QE LS ++ L+ D
Sbjct: 1101 CNKCGLMGYSGWCTTCKSAENVIKMTIPYAAKLLFQELLSMNIAPRLRLD 1150
>gi|410955304|ref|XP_003984296.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Felis catus]
Length = 1070
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 160/397 (40%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 694 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVLQKLDDDGLPFIGAQ 753
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G G + I K E +V + + SND G F + I ++ + +
Sbjct: 754 LKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPRN 811
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 812 PTIGDKFASRHGQKGILSRLWPAEDMPFSESGMVPDILFNPHGFPSRMTIGMLIESMAGK 871
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G ++
Sbjct: 872 SAALHGLCHDATPFTFSEENSALE----YFGEMLKAAGYNFYGTERLYSG---------- 917
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
I+ I L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 918 ---ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 973
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 974 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNC 1033
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1034 TLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1069
>gi|389594282|ref|XP_001685000.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
strain Friedlin]
gi|321399803|emb|CAJ08180.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
strain Friedlin]
Length = 1185
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 170/406 (41%), Gaps = 108/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKD---IQVKSRPSDDM-----LNFGKIQSKS---- 45
M+++++E G FRS S+KA+ + + ++ P ++ ++ K+ +
Sbjct: 807 MSRSAVERGFFRSAFWRSFKAKEERQKRDALETFENPDRELCRVKRADYSKLDTDGLIKP 866
Query: 46 ------GDIVIGKYAEIGA----------------DHSIKLKHTERGLVLKVLLSSNDDG 83
GD+V+GK + D SI + TE+G+V KV+L+ N++
Sbjct: 867 GMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRTTEKGVVDKVMLTMNNND 926
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+ F V IR + +GDKF S HGQKG G E P
Sbjct: 927 R-FTKVKIR----TIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHA 981
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLL--NCIGARN 174
A L+E GK AC G YATPF + + + SQ C+ +
Sbjct: 982 IPSRMTVAHLIETLAGKVACYKGGEVYATPFCSVVVDDFGKALHALRSQRYGNECLYNGH 1041
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
+G+ P+D LIF TFYQ+ H+S DK+ R G Q
Sbjct: 1042 TGL---------------PLD---------HLIFFGPTFYQRLKHLSGDKIHARPRGPLQ 1077
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVAN------VI 282
PL +P R GG+ FGEM+ DC++++GAS L ERL +V N V
Sbjct: 1078 PLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTICVA 1137
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+ C+ C + I + +PY KLL QEL SM I + T
Sbjct: 1138 DTKLNRYQCKGCENDTRISQVLMPYACKLLFQEL-MSMTILPRLGT 1182
>gi|410955302|ref|XP_003984295.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Felis catus]
Length = 1079
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 160/397 (40%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVLQKLDDDGLPFIGAQ 762
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G G + I K E +V + + SND G F + I ++ + +
Sbjct: 763 LKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPRN 820
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 821 PTIGDKFASRHGQKGILSRLWPAEDMPFSESGMVPDILFNPHGFPSRMTIGMLIESMAGK 880
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G ++
Sbjct: 881 SAALHGLCHDATPFTFSEENSALE----YFGEMLKAAGYNFYGTERLYSG---------- 926
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
I+ I L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 927 ---ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 982
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 983 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNC 1042
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1043 TLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|223994131|ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
[Thalassiosira pseudonana CCMP1335]
gi|220978064|gb|EED96390.1| DNA directed RNA polymerase III, second largest subunit
[Thalassiosira pseudonana CCMP1335]
Length = 1108
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 137/301 (45%), Gaps = 55/301 (18%)
Query: 50 IGKYAEIGADHS-IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 108
+ + A++ +S + + + V +VL+SSN++ + V +RQ V LGDKF+
Sbjct: 815 VERLAQVSYKYSGMSYRSSAPSYVDRVLISSNENEQFLIKVMLRQ----VRRPELGDKFA 870
Query: 109 SMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACDGLM 141
S HGQKGV G F EQ T +L+E +GK G +G
Sbjct: 871 SRHGQKGVCGLIVPQVDMPFNEQGFPPDLIMNPHGFPSRMTVGKLIELLVGKAGVFEGRQ 930
Query: 142 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 201
+YA+ F G T Q S L I RN G+ + K F + P+D
Sbjct: 931 AYASAFGEEFGSTDTVQ-----SAELALI--RN-GLNYTGKDIFYSGVNGAPLD------ 976
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
+ IF+ FYQ+ HM DK+ R+ G LT +P R R GG+ GEM+ DCLI
Sbjct: 977 ---AYIFSGPVFYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI 1033
Query: 262 AHGASGNLHERLK------CKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE 315
A+GAS + ERL +V + +C+ C S + + +PY KLL QE
Sbjct: 1034 AYGASNLIMERLMHSSDAFSASVCMTCGLLQYQNWCQYCRSGEKVSDIRLPYACKLLFQE 1093
Query: 316 L 316
L
Sbjct: 1094 L 1094
>gi|242808107|ref|XP_002485094.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715719|gb|EED15141.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1212
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 131/285 (45%), Gaps = 58/285 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 942 KVMVSVTEGESKIYKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGI 997
Query: 123 ---------------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
T +LLE GK G++S + T+ GG E+ + +
Sbjct: 998 VPDIIMNPHGFPSRMTVGKLLELVAGKA---GVLSGQHGYGTAFGGSPVEEMSAILV--- 1051
Query: 168 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
+ G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1052 ------DKGFSYGGKDYLTSGITGDPLPF---------YVFTGPIYYQKLKHMVQDKMHS 1096
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQR 284
R+TG LT +P R R GG+ GEM+ DCLIA+G S L ERL K+ ++ ++
Sbjct: 1097 RSTGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMLSSDKHEVDICEK 1156
Query: 285 --VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C S+ ++K +PY AKLL QEL SM +T +
Sbjct: 1157 CGFMGYQNWCQRCRSSRGVVKMTIPYAAKLLIQEL-LSMNVTARL 1200
>gi|410955300|ref|XP_003984294.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Felis catus]
Length = 1135
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 160/397 (40%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVLQKLDDDGLPFIGAQ 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G G + I K E +V + + SND G F + I ++ + +
Sbjct: 819 LKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPAEDMPFSESGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G ++
Sbjct: 937 SAALHGLCHDATPFTFSEENSALE----YFGEMLKAAGYNFYGTERLYSG---------- 982
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
I+ I L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 983 ---ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1099 TLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
Length = 1196
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 166/404 (41%), Gaps = 106/404 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNK--------DIQVKSRP--------------SDDMLNF 38
+N+++++ G FRSE Y+ D + ++ K P DD L
Sbjct: 813 INESAIQRGFFRSEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIA 872
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ D++IGK + D S+ ++ +E G+V +V+++ N++G
Sbjct: 873 PGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEG 932
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + + +GDKF+S HGQKG G E P
Sbjct: 933 NKFCKVRVRTT----KAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 988
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G +++G
Sbjct: 989 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVRKISLLLQEYGYQHTG 1041
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ ++ G Q L
Sbjct: 1042 NEIMYNGFTGRKL--------------NSQIFLGPTYYQRLKHMVDDKIHSQSRGPVQIL 1087
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +A Q
Sbjct: 1088 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQ 1147
Query: 284 RVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
R Y CR C + I +PY KLL QEL SM I +
Sbjct: 1148 R--NKTYECRSCKNTTQISLVKLPYACKLLFQEL-MSMSIAPRM 1188
>gi|212537851|ref|XP_002149081.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
marneffei ATCC 18224]
gi|210068823|gb|EEA22914.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
marneffei ATCC 18224]
Length = 1212
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 131/285 (45%), Gaps = 58/285 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 942 KVMVSVTEGESKIYKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFNDQGI 997
Query: 123 ---------------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
T +LLE GK G++S + T+ GG EQ + +
Sbjct: 998 VPDIIMNPHGFPSRMTVGKLLELVAGKA---GVLSGQHGYGTAFGGSPVEQMSAILV--- 1051
Query: 168 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
+ G ++ K Y + P+ + F+ + +YQ+ HM +DK+
Sbjct: 1052 ------DKGFSYGGKDYLTSGITGEPLPFYVFMGPI---------YYQKLKHMVQDKMHS 1096
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQR 284
R+TG LT +P R R GG+ GEM+ DCLIA+G S L ERL K+ ++ ++
Sbjct: 1097 RSTGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMLSSDKHEVDICEK 1156
Query: 285 --VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C S+ ++K +PY AKLL QEL SM +T +
Sbjct: 1157 CGFMGYQNWCQRCRSSRGVVKMTIPYAAKLLIQEL-LSMNVTARL 1200
>gi|260945433|ref|XP_002617014.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238848868|gb|EEQ38332.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 1159
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 144/325 (44%), Gaps = 65/325 (20%)
Query: 40 KIQSKSGDIVIGKY-----AEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQS 94
++ + +G+ V+G + AE + + E V +V++S +D+ + V +RQ+
Sbjct: 856 QVPTNAGESVLGDHNQPQSAESHRETPAYYRGPEPSYVDQVMMSVSDNDQALIKVLLRQT 915
Query: 95 VNMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLL 128
LGDKFSS HGQKGV G + Q T +++
Sbjct: 916 ----RRPELGDKFSSRHGQKGVCGIIVQHEDMPFNDMGISPDIIMNPHGFPSRMTVGKMI 971
Query: 129 EAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF 187
E GK G +G + Y T F GG E +S++L G SG ++
Sbjct: 972 ELISGKAGVLNGTLEYGTCF----GGSKLED----MSKILVDKGFNYSGKDMLYSGITGE 1023
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
CL ++ IF +YQ+ HM DK+ R+ G LT +P R R
Sbjct: 1024 CL--------------QAYIFFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRD 1069
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDII 301
GG+ GEM+ DC+IA+GAS L ERL +V N + +C C S++ +I
Sbjct: 1070 GGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNNCGLMGYSSWCSTCKSSEHVI 1129
Query: 302 KANVPYGAKLLSQELSFSMGITLKF 326
K +PY AKLL QEL SM I +
Sbjct: 1130 KMTIPYAAKLLFQEL-LSMNIAPRL 1153
>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
Length = 1209
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 174/387 (44%), Gaps = 78/387 (20%)
Query: 1 MNQASLECGVFRSESYKA----------------EVDNKD----IQVKSRPSDDMLNFGK 40
M+Q S++ G+FRS Y+ E+ NK +++ S D+ F +
Sbjct: 827 MSQDSIDRGLFRSVFYRCYRDEEKKKTNGFKETFEIPNKSECIGLKIGSYEKLDLDGFVQ 886
Query: 41 IQSK-SG-DIVIGKYAEIG------------------ADHSIKLKHTERGLVLKVLLSSN 80
S+ SG D++IGK D SI ++ E G+V K+++ ++
Sbjct: 887 EGSRISGEDVIIGKTVPFTNGISQKKILKFKKNPKYKKDASILARNCEVGVVDKIMIGTS 946
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF-LEQTPAQLLEAALGKGACDG 139
+ G + IR + +GDKF+S HGQKG+LG +Q + + D
Sbjct: 947 EYGNRLVKIRIRS----IRIPQVGDKFASRHGQKGILGMAYKQYDLPFTTEGM---SPDI 999
Query: 140 LMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-------IFKHYFLFCLFEC 192
+M+ P A + I ++ ++++ G G F I KH + +
Sbjct: 1000 IMN---PHAIPSRMTIGHVYECLLAKISAISGIEGDGTPFSSISIEKIMKHLKNYGYDKS 1056
Query: 193 PMDWIAFIC-----LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
W A I +++LIF T+YQ+ HM +DK+ R+ G Q LT +PV R R+
Sbjct: 1057 --GWEAMINGFTGKFLKNLIFIGPTYYQKLKHMVDDKIHSRSRGPVQILTRQPVEGRSRY 1114
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRVVGGPYCRICN 295
GG+ FGEM+ DC+++HG+ L +RL ++ VI R + CR C+
Sbjct: 1115 GGLRFGEMERDCILSHGSIVFLKDRLLDQSDPFVIFVCDLCGLIAIGNRKLKIFECRSCD 1174
Query: 296 SADDIIKANVPYGAKLLSQEL-SFSMG 321
+ I +PY KLL QEL + S+G
Sbjct: 1175 NKMFISLIKIPYACKLLLQELIALSIG 1201
>gi|448330660|ref|ZP_21519939.1| DNA-directed RNA polymerase subunit B' [Natrinema versiforme JCM
10478]
gi|242392376|dbj|BAH80401.1| RNA polymerase subunit B' [Natrinema versiforme]
gi|445611164|gb|ELY64924.1| DNA-directed RNA polymerase subunit B' [Natrinema versiforme JCM
10478]
Length = 609
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 132/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVIGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + G D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTEGGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + L + D + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRSGLEDSGFDSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|402220302|gb|EJU00374.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 1151
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 109/393 (27%), Positives = 161/393 (40%), Gaps = 104/393 (26%)
Query: 1 MNQASLECGVFRSESYKAEV---------------DNKDIQVKSRPSDD--------MLN 37
+N+ASL+ G R + Y+ V D +V RP D +
Sbjct: 772 INRASLDRGYGRCQVYRKNVTLIRKYPNGTFDRLADAPIDEVTGRPPDKYSALQADGIAG 831
Query: 38 FGKIQSKSGDIVIGKYAEIGADHS--------------IKLKHTER-------GLVLKVL 76
G+ Q + GD+ I K + A+ + ++ K+T G+V KV+
Sbjct: 832 VGE-QLRPGDVYINKQSPANANDNSFNANVLDSTSTSLVQYKNTPMTYRSPVGGIVDKVM 890
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------- 124
L+ ++ + V IRQ+ LGDKFSS HGQKGV G + E P
Sbjct: 891 LTETENDQTLVKVLIRQT----RRPELGDKFSSRHGQKGVCGLIINEEDMPFNDQGIKPD 946
Query: 125 --------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 169
+++E GK G G + Y T F G + + Q + + N
Sbjct: 947 VIFNPHGMPSRMTVGKMIELLAGKAGVLKGKLQYGTAFG---GSKVEDMSQILIEKGFNY 1003
Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
G K Y L PM+ + ++ +YQ+ HM DK+ R
Sbjct: 1004 AG----------KDYLTSGLTGEPME---------AYVYFGPIYYQKLKHMVMDKMHSRA 1044
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR-- 284
G LT +P R R GG+ GEM+ DCLI +GA+ L ERL + A N Q
Sbjct: 1045 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFEINACQECG 1104
Query: 285 VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
++G +C +C S+ + K +PY AKLL QEL
Sbjct: 1105 LLGYNGWCPLCKSSKRVAKLTIPYAAKLLFQEL 1137
>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
Length = 1134
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 134/298 (44%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K TE + KV++S+N++ + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 859 ITYKGTEPSYIEKVMVSTNNEEEFLVKILLRQT----RRPEIGDKFSSRHGQKGVTGLIV 914
Query: 121 EQ----------TPAQLLEA-------ALGK---------GACDGLMSYATPFATSTGGV 154
EQ +P ++ +GK G +G Y T F S
Sbjct: 915 EQEDLPFNDFGMSPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAFGGS---- 970
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
+ Q +L +G F+ K F + P++ I++ +Y
Sbjct: 971 ---KCQDLQDELFK------NGFNFLGKDIFYSGITGEPLEM---------YIYSGPVYY 1012
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 1013 QKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 1072
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V NV R+ +C C S+ + K ++PY KLL QEL+ SM I +
Sbjct: 1073 ISSDAFDVDVCNVCGRLAYSSWCHNCRSSASVSKISMPYACKLLFQELT-SMNIVPRL 1129
>gi|212223363|ref|YP_002306599.1| DNA-directed RNA polymerase subunit B [Thermococcus onnurineus NA1]
gi|212008320|gb|ACJ15702.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus onnurineus
NA1]
Length = 1120
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 99/336 (29%), Positives = 157/336 (46%), Gaps = 55/336 (16%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V+ KD+ V ++ P F + QS G I++ + E S+ ++ +E+G+V KV
Sbjct: 800 ESKVEGKDVLVGRTSPP----RFLEEQSGLGGIILQERRET----SVAVRPSEKGIVDKV 851
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V++R + GDKF+S HGQKGV+G + P + +
Sbjct: 852 IITETGDGTKLVKVTVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMPWTESGI 905
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 906 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEERLRKELEEL 961
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 962 GFKHSGREVMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1016
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV 286
P R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R
Sbjct: 1017 PTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWACESCGHLALEDKR-R 1075
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
G YC +C + I K + Y KLL EL +MGI
Sbjct: 1076 GKVYCPVCGEEEKISKVEMSYAFKLLLDELK-AMGI 1110
>gi|400597534|gb|EJP65264.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
Length = 1157
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 135/301 (44%), Gaps = 56/301 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D ++ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 872 DSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQT----RRPELGDKFSSRHGQKGVVG 927
Query: 119 FLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGVITEQH----QSFVSQLLNCIGA 172
+ + PFA + T +I H + V +LL C+
Sbjct: 928 IIVE-------------------HEDMPFADNGLTPDIIMNPHGFPSRMTVGKLLECLTG 968
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICL--------------------VRSLIFTWIT 212
+ S I + F P++ ++ + L + + IF
Sbjct: 969 KASIIHGRPDYGFGDAFRSHPLEEMSQVLLDHGFSWEGKDYFTSGLTGEPLEAYIFNGPI 1028
Query: 213 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 272
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ER
Sbjct: 1029 YYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLER 1088
Query: 273 LKCKN---VANVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLK 325
L + V ++ Q+ + G YC+ C S ++ K +PY AKLL QEL S ++G+ L+
Sbjct: 1089 LMISSDGVVIDICQQCGLFGYKGYCQTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQ 1148
Query: 326 F 326
Sbjct: 1149 L 1149
>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
Length = 1233
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 166/400 (41%), Gaps = 112/400 (28%)
Query: 1 MNQASLECGVFRSESYKAEVD---NKDI--------QVKSRPSDDML------NFGKIQS 43
MNQA+++ G+FRS Y+ D NK I + RP+ D ++ KI S
Sbjct: 851 MNQAAIDRGLFRSTFYRTYSDKEHNKGIWDSPEYLQETFERPNRDECTAMRHGSYEKIDS 910
Query: 44 ----------KSGDIVIGKY---------AEIGA----DHSIKLKHTERGLVLKVLLSSN 80
DI++GK AE D S ++ E GLV +V+LS+N
Sbjct: 911 DGLVSPGVRVSGSDILVGKTSPSWHSGLKAERSGPSKRDSSTTMRPNESGLVDQVMLSTN 970
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
DG F V R + +GDKF+S HGQKG +G E P
Sbjct: 971 QDGMKFTKVRTR----TIRIPQIGDKFASRHGQKGTIGMTYAQEDMPWTRDGVSPDIIVN 1026
Query: 125 ----------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E K GA G ATPF V +Q ++ +L+ +G
Sbjct: 1027 PHAIPSRMTIGHLVECLQSKVGALTGKEGDATPFT----DVSVDQ----IAGVLHELGYH 1078
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
G ++ + ++ + +F TFYQ+ H+ +DK+ R+ G
Sbjct: 1079 RHGNEVMYSGHTGR--------------IIHAKVFLGPTFYQRLKHLVDDKIHARSRGPV 1124
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVAN 280
LT +P+ R R GG+ GEM+ DCLI+HG S L +R+ C +A+
Sbjct: 1125 TMLTRQPMEGRARDGGLRMGEMERDCLISHGVSSFLRDRMFANSDPYSIHVCTLCGLIAH 1184
Query: 281 VIQR----VVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
R C+ NS+ I++ ++PY KLL QEL
Sbjct: 1185 ADLRKRAFWCNNKDCQHANSS--IVRVHIPYACKLLFQEL 1222
>gi|50292925|ref|XP_448895.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528208|emb|CAG61865.1| unnamed protein product [Candida glabrata]
Length = 1133
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 148/333 (44%), Gaps = 76/333 (22%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKL------------KHTERGLVLKVLLSSNDDGKNFAV 88
++ +SG I I K + + ++ + + E ++ +V++S++D+ ++
Sbjct: 822 LKIRSGQIYINKSVPVQSSDAMAVNQAQYRETPVIYRAPELSIIDQVMMSTSDNDQDLIK 881
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-------------------------- 122
V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 882 VLLRQN----RRPELGDKFSSRHGQKGVCGIIVQQEDMPFNDQGICPDIIMNPHGFPSRM 937
Query: 123 TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITF 179
T +++E GK G +G + Y T F G + + + V Q N G SGIT
Sbjct: 938 TVGKMIELISGKAGVLNGSLEYGTCFG---GSKLEDMSKILVDQGFNYSGKDMLYSGITG 994
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
EC +++ IF +YQ+ HM DK+ R G LT +
Sbjct: 995 -----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1033
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-----VVG-GPYCRI 293
P R R GG+ GEM+ DC+IA+GAS L ERL + A + ++G +C
Sbjct: 1034 PTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCSNCGLMGYSGWCST 1093
Query: 294 CNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C SA+ IIK +PY AKLL QEL +M I +
Sbjct: 1094 CKSAEHIIKMTIPYAAKLLFQEL-LAMNIAPRL 1125
>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 1202
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/415 (26%), Positives = 168/415 (40%), Gaps = 117/415 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNK-------------------DIQVKSRPS--------- 32
MNQ++++ G FRS Y+ +D + + + SR +
Sbjct: 806 MNQSAIDRGFFRSTFYRCYIDQERNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSY 865
Query: 33 ----DDMLNFGKIQSKSGDIVIGKYAEI--GADHSIKLKHTER-----------GLVLKV 75
+D L + DI+IGK + + D S++ +H +R G++ V
Sbjct: 866 HKLDNDGLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQRHQKRDASTALRSHENGIIDSV 925
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------- 124
+L++N DG F V R + +GDKF+S HGQKG +G E P
Sbjct: 926 MLTTNADGFKFTKVRFRN----IRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGITP 981
Query: 125 ---------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLN 168
L+E LGK + G ATPF T I + L+
Sbjct: 982 DIVVNPHAIPSRMTVGHLVECLLGKVSSQTGDEGDATPFTDVTVQAIAD--------TLH 1033
Query: 169 CIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
+G + G ++ + L + IF TFYQ+ HM +DK+ R
Sbjct: 1034 NLGYQKHGNEVMYSGHTGRRL--------------TAQIFIGPTFYQRLKHMVDDKIHSR 1079
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN----------- 277
+ G LT +P+ R R GG+ GEM+ DCLI+HG++ L +RL +
Sbjct: 1080 SRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDIC 1139
Query: 278 ----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+AN+ + CR C + I + ++PY KLL QEL +M I + T
Sbjct: 1140 GIIAIANLRKMTFE---CRTCRNKTQISQVHIPYSCKLLFQEL-MAMSIAPRLFT 1190
>gi|85083820|ref|XP_957195.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
crassa OR74A]
gi|7800864|emb|CAB91222.1| probable DNA-directed RNA polymerase III second-largest chain
[Neurospora crassa]
gi|28918282|gb|EAA27959.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
crassa OR74A]
Length = 1155
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 136/295 (46%), Gaps = 36/295 (12%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S + ++ ++ KV++S N+ V RQ+ LGDKFSS HGQKGV+G
Sbjct: 870 DASTNYRISDPAIIDKVMISVNERENKLIKVQTRQT----RRPELGDKFSSRHGQKGVVG 925
Query: 119 FL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITEQHQ-----SFVS 164
+ E P + + M+ F TG VI + +F S
Sbjct: 926 IIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAGEKDYGFGDAFRS 985
Query: 165 QLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 222
+ +G + G ++ K YF + PM+ + I+ FYQ+ HM +
Sbjct: 986 HPVESMGQALIDHGFSWEGKDYFTSGITGEPME---------AYIYNGPIFYQRLKHMVQ 1036
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA--- 279
DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL +
Sbjct: 1037 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTEL 1096
Query: 280 NVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 330
+V Q + G YC C S ++ + +PY KLL QEL S ++G+ LK + +
Sbjct: 1097 DVCQECGLFGYKGYCNACKSTRNVTQMTMPYACKLLVQELISMNVGVKLKLEDEF 1151
>gi|342879891|gb|EGU81124.1| hypothetical protein FOXB_08398 [Fusarium oxysporum Fo5176]
Length = 1150
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 135/311 (43%), Gaps = 58/311 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 857 DSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 912
Query: 119 FL-EQ-------------------------TPAQLLEAALGKGA-CDGLMSYATPFATST 151
+ EQ T +LLE GK + G Y
Sbjct: 913 IIVEQEDLPFSDSGLSPDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRPDYGF------ 966
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G +SQ+L + G ++ K YF + P++ + +F
Sbjct: 967 GDAFRSHPLEEMSQVLV-----DHGFSWEGKDYFTSGITGEPLE---------AYVFNGP 1012
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1013 IYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLE 1072
Query: 272 RLKCKNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITL 324
RL + I + G YC C S ++ K +PY AKLL QEL S ++G+ L
Sbjct: 1073 RLMISSDGTEIDICQQCGLFGYKGYCHTCKSTREVTKMTMPYAAKLLVQELISMNVGVRL 1132
Query: 325 KFDTQLSGVSM 335
+ D + S+
Sbjct: 1133 QMDDEFPHPSI 1143
>gi|336468399|gb|EGO56562.1| hypothetical protein NEUTE1DRAFT_83883 [Neurospora tetrasperma FGSC
2508]
gi|350289345|gb|EGZ70570.1| putative DNA-directed RNA polymerase III second-largest chain
[Neurospora tetrasperma FGSC 2509]
Length = 1155
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 136/295 (46%), Gaps = 36/295 (12%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S + ++ ++ KV++S N+ V RQ+ LGDKFSS HGQKGV+G
Sbjct: 870 DASTNYRISDPAIIDKVMISVNERENKLIKVQTRQT----RRPELGDKFSSRHGQKGVVG 925
Query: 119 FL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITEQHQ-----SFVS 164
+ E P + + M+ F TG VI + +F S
Sbjct: 926 IIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAGEKDYGFGDAFRS 985
Query: 165 QLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 222
+ +G + G ++ K YF + PM+ + I+ FYQ+ HM +
Sbjct: 986 HPVESMGQALIDHGFSWEGKDYFTSGITGEPME---------AYIYNGPIFYQRLKHMVQ 1036
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA--- 279
DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL +
Sbjct: 1037 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTEL 1096
Query: 280 NVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 330
+V Q + G YC C S ++ + +PY KLL QEL S ++G+ LK + +
Sbjct: 1097 DVCQECGLFGYKGYCNACKSTRNVTQMTMPYACKLLVQELISMNVGVKLKLEDEF 1151
>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
Length = 1118
Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats.
Identities = 93/329 (28%), Positives = 153/329 (46%), Gaps = 52/329 (15%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++VD KD+ + ++ P + G + G +++ + E S+ ++ +E+G+V KV
Sbjct: 798 ESKVDGKDVLIGRTSPPRFLEERGGL----GGMILQERRET----SVAVRPSEKGIVDKV 849
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 850 IITETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGI 903
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 904 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEERLRKELEEL 959
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I LV IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 960 GFKHNGREVMY----DGITGKRLVAD-IFIGVIYYQRLHHMVADKIHARSRGPVQVLTKQ 1014
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVG 287
P R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + G
Sbjct: 1015 PTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRG 1074
Query: 288 GPYCRICNSADDIIKANVPYGAKLLSQEL 316
YC +C + I K + Y KLL EL
Sbjct: 1075 KVYCPVCGEEERISKVEMSYAFKLLLDEL 1103
>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
Length = 1171
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 108/415 (26%), Positives = 168/415 (40%), Gaps = 117/415 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNK-------------------DIQVKSRPS--------- 32
MNQ++++ G FRS Y+ +D + + + SR +
Sbjct: 775 MNQSAIDRGFFRSTFYRCYIDQERNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSY 834
Query: 33 ----DDMLNFGKIQSKSGDIVIGKYAEI--GADHSIKLKHTER-----------GLVLKV 75
+D L + DI+IGK + + D S++ +H +R G++ V
Sbjct: 835 HKLDNDGLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQRHQKRDASTALRSHENGIIDSV 894
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------- 124
+L++N DG F V R + +GDKF+S HGQKG +G E P
Sbjct: 895 MLTTNADGFKFTKVRFRN----IRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGITP 950
Query: 125 ---------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLN 168
L+E LGK + G ATPF T I + L+
Sbjct: 951 DIVVNPHAIPSRMTVGHLVECLLGKVSSQTGDEGDATPFTDVTVQAIAD--------TLH 1002
Query: 169 CIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
+G + G ++ + L + IF TFYQ+ HM +DK+ R
Sbjct: 1003 NLGYQKHGNEVMYSGHTGRRL--------------TAQIFIGPTFYQRLKHMVDDKIHSR 1048
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN----------- 277
+ G LT +P+ R R GG+ GEM+ DCLI+HG++ L +RL +
Sbjct: 1049 SRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDIC 1108
Query: 278 ----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+AN+ + CR C + I + ++PY KLL QEL +M I + T
Sbjct: 1109 GIIAIANLRKMTFE---CRTCRNKTQISQVHIPYSCKLLFQEL-MAMSIAPRLFT 1159
>gi|365986765|ref|XP_003670214.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
gi|343768984|emb|CCD24971.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
Length = 1154
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 135/303 (44%), Gaps = 64/303 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D + + E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 872 DTPVMYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCG 927
Query: 119 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ Q T +++E GK G +G + Y T F
Sbjct: 928 IIVQQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCFG--- 984
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
G + + + V Q N G SGIT EC +++ IF
Sbjct: 985 GSKLEDMSKILVDQGFNYSGKDMLYSGITG-----------EC----------LQAYIFF 1023
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L
Sbjct: 1024 GPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLL 1083
Query: 270 HERLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT 323
ERL + A + ++G +C C SA++IIK +PY AKLL QEL SM I
Sbjct: 1084 LERLMISSDAFEVDVCDECGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIA 1142
Query: 324 LKF 326
+
Sbjct: 1143 PRL 1145
>gi|408388464|gb|EKJ68148.1| hypothetical protein FPSE_11615 [Fusarium pseudograminearum CS3096]
Length = 1157
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 137/305 (44%), Gaps = 48/305 (15%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 872 DSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 927
Query: 119 FL-EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
+ EQ ++ L + D +M+ + P + G +LL C+ + S
Sbjct: 928 IIVEQEDLPFSDSGL---SPDIIMNPHGFPSRMTVG------------KLLECLTGKASI 972
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICL--------------------VRSLIFTWITFYQQ 216
I + F P++ ++ + + + + +F +YQ+
Sbjct: 973 IHGRPDYGFGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQR 1032
Query: 217 FIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK 276
HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1033 LKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMIS 1092
Query: 277 NVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQ 329
+ I + G YC C S ++ K +PY AKLL QEL S ++G+ L+ D +
Sbjct: 1093 SDGTEIDICQQCGLFGYKGYCHTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQMDDE 1152
Query: 330 LSGVS 334
S
Sbjct: 1153 FPHPS 1157
>gi|241958746|ref|XP_002422092.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223645437|emb|CAX40093.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1157
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 142/324 (43%), Gaps = 65/324 (20%)
Query: 41 IQSKSGDIVIG-----KYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
+ + SGD +G + AE + K E + +V++S +D+ + V +RQ+
Sbjct: 855 VPTNSGDSTLGAQQEQRTAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQT- 913
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLE 129
LGDKFSS HGQKGV G + Q T +++E
Sbjct: 914 ---RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIE 970
Query: 130 AALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 188
GK G +G + Y T F GG E +S++L G SG ++ C
Sbjct: 971 LISGKAGVLNGSLEYGTCF----GGSKLED----MSKILVEKGFSYSGKDMLYSGITGEC 1022
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
L ++ IF +YQ+ HM DK+ R G LT +P R R G
Sbjct: 1023 L--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDG 1068
Query: 249 GIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIK 302
G+ GEM+ DC+IA+GAS L ERL +V N + +C C S++++IK
Sbjct: 1069 GLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNNWCTTCKSSENVIK 1128
Query: 303 ANVPYGAKLLSQELSFSMGITLKF 326
+PY AKLL QEL SM I +
Sbjct: 1129 MTIPYAAKLLFQEL-LSMNIAPRL 1151
>gi|302307227|ref|NP_983821.2| ADL275Cp [Ashbya gossypii ATCC 10895]
gi|299788898|gb|AAS51645.2| ADL275Cp [Ashbya gossypii ATCC 10895]
gi|374107033|gb|AEY95941.1| FADL275Cp [Ashbya gossypii FDAG1]
Length = 1141
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 138/319 (43%), Gaps = 60/319 (18%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 100
I + + D V+ + + I + E + +V++S +D+ + V +RQ+
Sbjct: 842 IPTNASDSVLNQVQSQYREAPIIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RR 897
Query: 101 ACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK 134
LGDKFSS HGQKGV G + Q T ++LE GK
Sbjct: 898 PELGDKFSSRHGQKGVCGIIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMLELVSGK 957
Query: 135 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
G +G + Y T F S + +S++L G SG ++ CL
Sbjct: 958 AGVLNGTLEYGTCFGGS--------QLADMSEILVNNGFNYSGKDMLYSGITGECL---- 1005
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
++ +F +YQ+ HM DK+ R G LT +P R R GG+ G
Sbjct: 1006 ----------QAYVFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1055
Query: 254 EMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPY 307
EM+ DC+IA+GAS L ERL +V N + +C C SA+ IIK +PY
Sbjct: 1056 EMERDCVIAYGASQLLLERLMLSSDAFEVDVCNKCGLMGYSGWCTSCKSAEHIIKMTIPY 1115
Query: 308 GAKLLSQELSFSMGITLKF 326
AKLL QEL SM I +
Sbjct: 1116 AAKLLFQEL-LSMNIAPRL 1133
>gi|46107920|ref|XP_381019.1| hypothetical protein FG00843.1 [Gibberella zeae PH-1]
Length = 1157
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 136/301 (45%), Gaps = 48/301 (15%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 872 DSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 927
Query: 119 FL-EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
+ EQ ++ L + D +M+ + P + G +LL C+ + S
Sbjct: 928 IIVEQEDLPFSDSGL---SPDIIMNPHGFPSRMTVG------------KLLECLTGKASI 972
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICL--------------------VRSLIFTWITFYQQ 216
I + F P++ ++ + + + + +F +YQ+
Sbjct: 973 IHGRPDYGFGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQR 1032
Query: 217 FIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK 276
HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1033 LKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMIS 1092
Query: 277 NVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQ 329
+ I + G YC C S ++ K +PY AKLL QEL S ++G+ L+ D +
Sbjct: 1093 SDGTEIDICQQCGLFGYKGYCHTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQMDDE 1152
Query: 330 L 330
Sbjct: 1153 F 1153
>gi|223478302|ref|YP_002582840.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
gi|214033528|gb|EEB74355.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
Length = 1122
Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats.
Identities = 95/329 (28%), Positives = 153/329 (46%), Gaps = 52/329 (15%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V+ KD+ V ++ P F + QS G I + + E S+ ++ +E+G+V KV
Sbjct: 802 ESKVEGKDVLVGRTSPP----RFLEEQSGLGGIALQERRET----SVAVRPSEKGIVDKV 853
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 854 IITETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTENGI 907
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 908 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEERLRKELEEL 963
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 964 GFKHTGREVMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1018
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVG 287
P R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + G
Sbjct: 1019 PTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRG 1078
Query: 288 GPYCRICNSADDIIKANVPYGAKLLSQEL 316
YC +C + I K + Y KLL EL
Sbjct: 1079 KVYCPVCGEEERISKVEMSYAFKLLLDEL 1107
>gi|448336440|ref|ZP_21525539.1| DNA-directed RNA polymerase subunit B' [Natrinema pallidum DSM
3751]
gi|242392372|dbj|BAH80399.1| RNA polymerase subunit B' [Natrinema pallidum]
gi|445629180|gb|ELY82474.1| DNA-directed RNA polymerase subunit B' [Natrinema pallidum DSM
3751]
Length = 609
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|448711918|ref|ZP_21701461.1| DNA-directed RNA polymerase subunit B' [Halobiforma nitratireducens
JCM 10879]
gi|242392300|dbj|BAH80343.1| RNA polymerase subunit B' [Halobiforma nitratireducens]
gi|445791003|gb|EMA41652.1| DNA-directed RNA polymerase subunit B' [Halobiforma nitratireducens
JCM 10879]
Length = 609
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 130/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVIGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSLEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + FE + + + + IF+ + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEEDLRKGLEEAGFEPSGKETMYSGITGEKIEAEIFSGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREYIPICGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
Length = 1173
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKA--EVDNKDI----QVKSRPS----------------DDMLNF 38
+N++S++ G FRS Y++ + +NK + RP DD L
Sbjct: 795 VNKSSVDRGFFRSVFYRSYKDAENKSAYDQEETFERPERSFCTGMRHAIYDKLDDDGLVS 854
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+ +E G+V +V++S N DG
Sbjct: 855 PGIRVSGDDVVIGKTVMLPENEDELEGTTQRFKKRDVSTFLRTSETGIVDQVMISINQDG 914
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 915 YKFTKIRVRS----VRVPQIGDKFASRHGQKGTCGITYRAEDMPFTSEGVQPDLIVNPHA 970
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G + G
Sbjct: 971 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDTV-------NVQKISNLLHEYGYQQRG 1023
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1024 NEVLYNGHTGRKL--------------NTQVFFGPTYYQRLKHMVDDKIHSRARGPVQIL 1069
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1070 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNLCGLIAIANL 1129
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
CR C + I + +PY KLL QEL SM I +
Sbjct: 1130 RSHTFE---CRGCKNKTHISQVRMPYACKLLFQEL-MSMSIAPRM 1170
>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
gondii ME49]
gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
gondii ME49]
gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
GT1]
gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
VEG]
Length = 1259
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 141/307 (45%), Gaps = 65/307 (21%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 108
V +A+ D S+ L+ +E G+V +V+LS N+ G F V +R SV + + GDKF+
Sbjct: 965 VPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNNRGSRFTKVKVR-SVRIPQT---GDKFA 1020
Query: 109 SMHGQKGVLGFLEQT---------------------PAQ-----LLEAALGK-GACDGLM 141
S HGQKG +G +T P++ L+E LGK A G
Sbjct: 1021 SRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECLLGKTAAIFGGE 1080
Query: 142 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 201
ATPF G + + +S L+ +G G ++ + L
Sbjct: 1081 GDATPF---NGYAVLD-----ISNRLHSLGYERFGNERLYHGHTGRHL------------ 1120
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
SLIF T+YQ+ HM +DK+ R G LT +P+ + R GG+ FGEM+ DC+I
Sbjct: 1121 --PSLIFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMI 1178
Query: 262 AHGASGNLHERLKCKNVANVIQ------------RVVGGPYCRICNSADDIIKANVPYGA 309
+HGA+ L ERL ++ A + G C++C++ I + +PY
Sbjct: 1179 SHGAAHMLKERLFEQSDAYRVHVCDICGLVCTADLSRGNFECKLCDNKSRISQICIPYAC 1238
Query: 310 KLLSQEL 316
KLL QEL
Sbjct: 1239 KLLLQEL 1245
>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
[Tribolium castaneum]
gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
Length = 1122
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 134/301 (44%), Gaps = 60/301 (19%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I ++ E + KVL+S+N++ + +RQ+ +GDKFSS HGQKGV+G
Sbjct: 842 DTPICYRNNEPSYIEKVLVSTNEEDTTIIKILLRQT----RRPEIGDKFSSRHGQKGVVG 897
Query: 119 FL-EQ-------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ EQ T +L+E GK G +G Y T F S
Sbjct: 898 LVVEQEDMPFNEYGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLVEGKFHYGTAFGGSK 957
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ E+ G + K +F + P++ + I++
Sbjct: 958 VNDVCEE-------------LAKHGFNYQGKDFFYSGITGEPLE---------AYIYSGP 995
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI +GAS L E
Sbjct: 996 VYYQKLKHMVQDKIHARGRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMMLIE 1055
Query: 272 RL-----KCK-NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
RL +C+ +V N+ R+ +C C S+ ++ +PY KLL EL +M IT +
Sbjct: 1056 RLMVSSDQCEVDVCNLCGRLGYCGWCNSCKSSREVSSITMPYACKLLLTELQ-AMNITAR 1114
Query: 326 F 326
Sbjct: 1115 L 1115
>gi|289581816|ref|YP_003480282.1| DNA-directed RNA polymerase subunit B [Natrialba magadii ATCC
43099]
gi|289531369|gb|ADD05720.1| DNA-directed RNA polymerase subunit B [Natrialba magadii ATCC
43099]
Length = 609
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 129/293 (44%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V + L +DG + VS+R LGDKF+S HGQKGVLG L
Sbjct: 326 SVTMRSGESGVVDTITLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVLGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTENGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 IFKHYFLF--CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + L E D + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESALRDGLEEAGFDSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMESDVFIGHGAAMTLKERLLDESDREFINVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCEEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
asahii CBS 2479]
Length = 1732
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 142/331 (42%), Gaps = 95/331 (28%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSD---DMLNFG 39
MNQ+S++ G+FRS Y+A D N+ +++K SD + N G
Sbjct: 829 MNQSSIDRGLFRSLYYRAYTDTEKMVGMQKVESFEKPDRNETLRMKHGSSDRYAKLDNDG 888
Query: 40 KIQSKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSN 80
I + DI+IGK A I D S +K TE+G+V +V++++N
Sbjct: 889 LITPATNVNGDDIIIGKTAPIPPDSEELGQRSATHTKRDVSTPMKSTEQGVVDQVMITTN 948
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
DG F + IR + +GDKF+S HGQKG +G E P
Sbjct: 949 ADGLKFVKIRIRST----RVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIIN 1004
Query: 125 ----------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E L K A G ATPF TE VS+LL G +
Sbjct: 1005 PHAIPSRMTIGHLVECLLSKLATLTGREGDATPF--------TELTVESVSKLLRQRGYQ 1056
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
+ G+ ++ + L R+ ++ T+YQ+ HM +DK+ R G
Sbjct: 1057 SRGLEVMYHGHTGKKL--------------RAQVYFGPTYYQRLKHMVDDKIHARARGPL 1102
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 264
Q LT +PV R R GG+ FGEM+ DCL HG
Sbjct: 1103 QILTRQPVEGRSRDGGLRFGEMERDCL--HG 1131
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 19/84 (22%)
Query: 258 DCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIK 302
+C+I+HG +G L ER+ +C VAN+ ++ +C +C ++ I +
Sbjct: 1646 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEF---HCSVCRNSTQISQ 1702
Query: 303 ANVPYGAKLLSQELSFSMGITLKF 326
+PY AKLL QEL +M +T++
Sbjct: 1703 IYIPYAAKLLFQELQ-AMNVTVRM 1725
>gi|397771994|ref|YP_006539540.1| RNA polymerase subunit B' [Natrinema sp. J7-2]
gi|448342573|ref|ZP_21531521.1| DNA-directed RNA polymerase subunit B' [Natrinema gari JCM 14663]
gi|397681087|gb|AFO55464.1| RNA polymerase subunit B' [Natrinema sp. J7-2]
gi|445625328|gb|ELY78690.1| DNA-directed RNA polymerase subunit B' [Natrinema gari JCM 14663]
Length = 609
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|240103983|ref|YP_002960292.1| DNA-directed RNA polymerase subunit B [Thermococcus gammatolerans
EJ3]
gi|239911537|gb|ACS34428.1| DNA-directed RNA polymerase subunit B (rpoB) [Thermococcus
gammatolerans EJ3]
Length = 1122
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 95/329 (28%), Positives = 153/329 (46%), Gaps = 52/329 (15%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V+ KD+ V ++ P F + QS G I + + E S+ ++ +E+G+V KV
Sbjct: 802 ESKVEGKDVLVGRTSPP----RFLEEQSGLGGIALQERRET----SVAVRPSEKGIVDKV 853
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 854 IITETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTENGI 907
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 908 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEEL 963
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 964 GFKHTGREVMY----DGITGRRL-EADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1018
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVG 287
P R R GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + G
Sbjct: 1019 PTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRG 1078
Query: 288 GPYCRICNSADDIIKANVPYGAKLLSQEL 316
YC +C + I K + Y KLL EL
Sbjct: 1079 KVYCPVCGEEERISKVEMSYAFKLLLDEL 1107
>gi|296243132|ref|YP_003650619.1| DNA-directed RNA polymerase subunit B' [Thermosphaera aggregans DSM
11486]
gi|296095716|gb|ADG91667.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
subunit B' [Thermosphaera aggregans DSM 11486]
Length = 1163
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 97/337 (28%), Positives = 143/337 (42%), Gaps = 81/337 (24%)
Query: 40 KIQSKSGDIVIGKYAE----------IGA-----DHSIKLKHTERGLVLKVLLSSNDDGK 84
+ Q GD+++GK + +GA D S+ ++H E+G+V VL++++++G
Sbjct: 841 ETQVAGGDVLVGKISPPRFLGAQEYMLGAGLTKQDTSVVMRHEEKGIVDTVLITTDNEGN 900
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R + LGDKF+S HGQKGVLG L
Sbjct: 901 KLVKVRVRD----LRIPELGDKFASRHGQKGVLGLLVPQYDMPFTEDGVVPDLVINPHAF 956
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T QL+E+ GK A +G + ATPF H++ V L
Sbjct: 957 PSRMTVGQLIESIAGKVAALEGRVVDATPF-----------HKTPVKDLE---------- 995
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
+ +H +L E D ++ S +F I +YQ+ HM DKV R G Q LT
Sbjct: 996 IVLKRHRYLPSGEEVMYDGRTGE-MISSPVFIGIVYYQKLHHMVSDKVHARARGPVQILT 1054
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANV--IQRV 285
+P R R GG+ +GEM+ DCL+ HG S L E + C+ ++ R
Sbjct: 1055 RQPTEGRSRAGGLRWGEMEVDCLVGHGTSLLLRETILDRSDITRVYVCEICGHIGWYDRN 1114
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
G C I + + Y KLL QEL S G+
Sbjct: 1115 KGKYLCPIHKEKGSLKPVEISYAFKLLLQEL-MSFGV 1150
>gi|242392350|dbj|BAH80388.1| RNA polymerase subunit B' [Haloterrigena sp. GSL-11]
Length = 609
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|242392296|dbj|BAH80341.1| RNA polymerase subunit B' [Halobiforma haloterrestris]
Length = 609
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 132/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L + G R G F
Sbjct: 382 --APQEDMPFTEDGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGSLEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + FE + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDESELREGLEEAGFESSGKETMYSGITGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREYIPICGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|448347127|ref|ZP_21536006.1| DNA-directed RNA polymerase subunit B' [Natrinema altunense JCM
12890]
gi|242392368|dbj|BAH80397.1| RNA polymerase subunit B' [Natrinema altunense]
gi|445631464|gb|ELY84696.1| DNA-directed RNA polymerase subunit B' [Natrinema altunense JCM
12890]
Length = 609
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 1156
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 132/294 (44%), Gaps = 60/294 (20%)
Query: 68 ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----- 122
E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 886 EPSYIDQVMMSVSDNDQTLIKVLLRQT----RRPELGDKFSSRHGQKGVCGIIVQQEDLP 941
Query: 123 ---------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQ 160
T +++E GK G +G + Y T F GG E
Sbjct: 942 FNDDGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCF----GGSKLED-- 995
Query: 161 SFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHM 220
+S++L G SG ++ CL ++ IF +YQ+ HM
Sbjct: 996 --MSEILVKNGFNYSGKDMLYSGITGECL--------------QAYIFFGPIYYQKLKHM 1039
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK---- 276
DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL
Sbjct: 1040 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAF 1099
Query: 277 --NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKFD 327
+V N + +C C S++++IK +PY AKLL QE LS ++ LK D
Sbjct: 1100 EVDVCNNCGLMGYNSWCTSCKSSENVIKMTIPYAAKLLFQELLSMNIAPRLKLD 1153
>gi|4867864|emb|CAB43075.1| RNA polymerase II [Mitrasacme pilosa]
Length = 242
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 106/242 (43%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G V VLL++N DG F V +R V +GDKFSS HGQKG +G
Sbjct: 20 DHSTSLRHSENGXVDXVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVG 75
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 76 MTYTQEDMPFTVEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 135
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L S IF
Sbjct: 136 --------VDNISRALHKCGYQMRGFERMYNGHTGRPLT--------------STIFLGP 173
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R G Q LT +P R R GG FGEM+ DC+IAH A+ L E
Sbjct: 174 XYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGXRFGEMERDCMIAHXAAHFLKE 233
Query: 272 RL 273
RL
Sbjct: 234 RL 235
>gi|383620454|ref|ZP_09946860.1| DNA-directed RNA polymerase subunit B' [Halobiforma lacisalsi AJ5]
gi|448697815|ref|ZP_21698693.1| DNA-directed RNA polymerase subunit B' [Halobiforma lacisalsi AJ5]
gi|242392298|dbj|BAH80342.1| RNA polymerase subunit B' [Halobiforma lacisalsi]
gi|445781181|gb|EMA32042.1| DNA-directed RNA polymerase subunit B' [Halobiforma lacisalsi AJ5]
Length = 609
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 132/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L + G R G F
Sbjct: 382 --APQEDMPFTEDGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGSLEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + FE + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDESELREGLEEAGFESSGKETMYSGITGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREYIPICAQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|448396746|ref|ZP_21569194.1| DNA-directed RNA polymerase subunit B' [Haloterrigena limicola JCM
13563]
gi|242392340|dbj|BAH80383.1| RNA polymerase subunit B' [Haloterrigena limicola JCM 13563]
gi|445673275|gb|ELZ25836.1| DNA-directed RNA polymerase subunit B' [Haloterrigena limicola JCM
13563]
Length = 609
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 128/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ K L + D + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDKDELREGLEDAGFDSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|346323848|gb|EGX93446.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Cordyceps
militaris CM01]
Length = 1164
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 135/301 (44%), Gaps = 56/301 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D ++ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 879 DSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQT----RRPELGDKFSSRHGQKGVVG 934
Query: 119 FLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGVITEQH----QSFVSQLLNCIGA 172
+ + PFA + T +I H + V +LL C+
Sbjct: 935 II-------------------VDHEDMPFADNGLTPDIIMNPHGFPSRMTVGKLLECLTG 975
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICL--------------------VRSLIFTWIT 212
+ S I + F P++ ++ + L + + IF
Sbjct: 976 KASIIHGRPDYGFGDAFRSHPVEEMSQVLLDHGFSWEGKDYFTSGLTGEPLEAYIFNGPI 1035
Query: 213 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 272
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ER
Sbjct: 1036 YYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLER 1095
Query: 273 LKCKN---VANVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLK 325
L + V ++ Q+ + G YC+ C S ++ K +PY AKLL QEL S ++G+ L+
Sbjct: 1096 LMISSDGVVIDICQQCGLFGYKGYCQTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQ 1155
Query: 326 F 326
Sbjct: 1156 L 1156
>gi|380094948|emb|CCC07450.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1150
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 136/295 (46%), Gaps = 36/295 (12%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S + ++ ++ KV++S N+ V RQ+ LGDKFSS HGQKGV+G
Sbjct: 865 DASTNYRISDPAIIDKVMISVNERENKLIKVQTRQT----RRPELGDKFSSRHGQKGVVG 920
Query: 119 FL---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITEQHQ-----SFVS 164
+ E P + + M+ F TG VI + +F S
Sbjct: 921 IIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAGEKDYGFGDAFRS 980
Query: 165 QLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 222
+ +G + G ++ K YF + PM+ + I+ FYQ+ HM +
Sbjct: 981 HPVESMGQALIDHGFSWEGKDYFTSGITGEPME---------AYIYNGPIFYQRLKHMVQ 1031
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA--- 279
DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL +
Sbjct: 1032 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTEL 1091
Query: 280 NVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 330
+V Q + G YC C S ++ + +PY KLL QEL S ++G+ LK + +
Sbjct: 1092 DVCQECGLFGYKGYCNACKSTRNVKQMTMPYACKLLVQELISMNVGVKLKLEDEF 1146
>gi|406604716|emb|CCH43851.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 1152
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 137/309 (44%), Gaps = 64/309 (20%)
Query: 51 GKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 110
G+Y E + K E + +V+++++D+ + V +RQ+ LGDKFSS
Sbjct: 869 GEYRET----PVVYKAPEPSYIDQVMMTTSDNDQELIKVLLRQT----RRPELGDKFSSR 920
Query: 111 HGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSY 143
HGQKGV G + Q T ++LE GK G +G + Y
Sbjct: 921 HGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKAGVLNGSLEY 980
Query: 144 ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLV 203
T F GG E +S++L G SG ++ CL
Sbjct: 981 GTCF----GGSDLED----MSKILMDKGFNYSGKDMLYSGITGECL-------------- 1018
Query: 204 RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAH 263
++ IF +YQ+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+
Sbjct: 1019 QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAY 1078
Query: 264 GASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELS 317
GAS L ERL ++ N + +C C +A+++I+ +PY AKLL QEL
Sbjct: 1079 GASQLLLERLMISSDAFDVDICNKCGLMGYNGWCTSCKNAENVIRMQIPYAAKLLFQEL- 1137
Query: 318 FSMGITLKF 326
SM I +
Sbjct: 1138 LSMNIAPRL 1146
>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 1156
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 132/294 (44%), Gaps = 60/294 (20%)
Query: 68 ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----- 122
E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 886 EPSYIDQVMMSVSDNDQTLIKVLLRQT----RRPELGDKFSSRHGQKGVCGIIVQQEDLP 941
Query: 123 ---------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQ 160
T +++E GK G +G + Y T F GG E
Sbjct: 942 FNDDGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCF----GGSKLED-- 995
Query: 161 SFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHM 220
+S++L G SG ++ CL ++ IF +YQ+ HM
Sbjct: 996 --MSEILVKNGFNYSGKDMLYSGITGECL--------------QAYIFFGPIYYQKLKHM 1039
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK---- 276
DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL
Sbjct: 1040 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAF 1099
Query: 277 --NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKFD 327
+V N + +C C S++++IK +PY AKLL QE LS ++ LK D
Sbjct: 1100 EVDVCNNCGLMGYNSWCTSCKSSENVIKMTIPYAAKLLFQELLSMNIAPRLKLD 1153
>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
asahii CBS 8904]
Length = 1757
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 142/331 (42%), Gaps = 95/331 (28%)
Query: 1 MNQASLECGVFRSESYKAEVD------------------NKDIQVKSRPSD---DMLNFG 39
MNQ+S++ G+FRS Y+A D N+ +++K SD + N G
Sbjct: 854 MNQSSIDRGLFRSLYYRAYTDTEKMVGMQKVESFEKPDRNETLRMKHGSSDRYAKLDNDG 913
Query: 40 KIQSKSG----DIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSN 80
I + DI+IGK A I D S +K TE+G+V +V++++N
Sbjct: 914 LITPATNVNGDDIIIGKTAPIPPDSEELGQRSATHTKRDVSTPMKSTEQGVVDQVMITTN 973
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
DG F + IR + +GDKF+S HGQKG +G E P
Sbjct: 974 ADGLKFVKIRIRST----RVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIIN 1029
Query: 125 ----------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E L K A G ATPF TE VS+LL G +
Sbjct: 1030 PHAIPSRMTIGHLVECLLSKLATLTGREGDATPF--------TELTVESVSKLLRQRGYQ 1081
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
+ G+ ++ + L R+ ++ T+YQ+ HM +DK+ R G
Sbjct: 1082 SRGLEVMYHGHTGKKL--------------RAQVYFGPTYYQRLKHMVDDKIHARARGPL 1127
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 264
Q LT +PV R R GG+ FGEM+ DCL HG
Sbjct: 1128 QILTRQPVEGRSRDGGLRFGEMERDCL--HG 1156
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 19/84 (22%)
Query: 258 DCLIAHGASGNLHERL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIK 302
+C+I+HG +G L ER+ +C VAN+ ++ +C +C ++ I +
Sbjct: 1671 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEF---HCSVCRNSTQISQ 1727
Query: 303 ANVPYGAKLLSQELSFSMGITLKF 326
+PY AKLL QEL +M +T++
Sbjct: 1728 IYIPYAAKLLFQELQ-AMNVTVRM 1750
>gi|358396944|gb|EHK46319.1| hypothetical protein TRIATDRAFT_132468 [Trichoderma atroviride IMI
206040]
Length = 1157
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 134/310 (43%), Gaps = 58/310 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D ++ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 872 DTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 927
Query: 119 FL---EQTP-----------------------AQLLEAALGKGA-CDGLMSYATPFATST 151
+ E P +LLE GK + G Y
Sbjct: 928 IIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRKDYGF------ 981
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G VS++L ++G ++ K YF + P++ + IF
Sbjct: 982 GDAFRSHPVQQVSEVLV-----DNGFSWEGKDYFTSGITGEPLE---------AYIFNGP 1027
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1028 IYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLE 1087
Query: 272 RLKCKNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITL 324
RL + +I + G YC C S D+ K +PY AKLL QEL S ++G+ L
Sbjct: 1088 RLMLSSDGTMIDICQQCGLFGYKGYCSTCKSTRDVTKMQMPYAAKLLVQELISMNVGVRL 1147
Query: 325 KFDTQLSGVS 334
+ + + S
Sbjct: 1148 QLEDEFPHPS 1157
>gi|365758302|gb|EHN00152.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1149
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQS LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQS----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVMNGTLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|322696543|gb|EFY88334.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
acridum CQMa 102]
Length = 1157
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 135/306 (44%), Gaps = 58/306 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D +I + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 872 DSAISYRIPDPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 927
Query: 119 FL---EQTP-----------------------AQLLEAALGKGAC-DGLMSYATPFATST 151
+ E P +LLE GK + DG Y
Sbjct: 928 IIVDQEDMPFADNGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIIDGRPDYGF------ 981
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G +SQ+L + G ++ K YF L P++ + IF
Sbjct: 982 GDAFRSHPVKDMSQVL-----LDYGFSWEGKDYFTSGLTGEPLE---------AYIFNGP 1027
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1028 IYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLE 1087
Query: 272 RLKCKN---VANVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITL 324
RL + ++ Q+ + G YC C S + + +PY AKLL QEL S ++G+ L
Sbjct: 1088 RLMLSSDGVTLDICQQCGLFGYKGYCNTCKSTRQVTQMQMPYAAKLLVQELISMNVGVRL 1147
Query: 325 KFDTQL 330
+ + +
Sbjct: 1148 QLEDEF 1153
>gi|444316230|ref|XP_004178772.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
gi|387511812|emb|CCH59253.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
Length = 1148
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 135/292 (46%), Gaps = 60/292 (20%)
Query: 68 ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----- 122
E V +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 876 EPSHVDQVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGLIVQQEDMP 931
Query: 123 ---------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQ 160
T +++E GK G +G + Y T F GG E+
Sbjct: 932 FNDQGINPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCF----GGSKLEE-- 985
Query: 161 SFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHM 220
+S++L G SG ++ CL ++ IF +YQ+ HM
Sbjct: 986 --MSKILVDKGFNYSGKDMLYSGITGECL--------------QAYIFFGPIYYQKLKHM 1029
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA- 279
DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A
Sbjct: 1030 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAF 1089
Query: 280 --NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V + ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1090 EVDVCDKCGLMGYSGWCTTCRSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1140
>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
Length = 1187
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 153/358 (42%), Gaps = 68/358 (18%)
Query: 11 FRSESYKAEVDNKDIQVKSRPSDDMLNFGK-IQSKSGDIVIGKYAE--IGADHSIKLKHT 67
R Y D+ I +R S D + GK I + GD + A+ D S+ K T
Sbjct: 842 MRHAMYDKLEDDGLIAPGTRISGDDVMIGKTIALQDGDDALDPTAKKYTKKDASLFAKPT 901
Query: 68 ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------- 120
E+G++ V+++ N+DG F + +R V +GDKF+S HGQKG G +
Sbjct: 902 EKGIIDSVMVTINEDGYKFVKIRLRS----VRIPEVGDKFASRHGQKGTNGIMLRCEDML 957
Query: 121 -------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQ 160
T L E K GA G + ATPF S +T Q
Sbjct: 958 FTPDGMQPDLIVNPHAIPSRMTIGHLFECLTSKVGAIKGEIGDATPFNPS----VTVQK- 1012
Query: 161 SFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHM 220
VS +L+ + G ++ + + + +F T+YQ+ HM
Sbjct: 1013 --VSDILHEYEYQQRGNEVLYSGFTGRKM--------------NTQVFFGPTYYQRLKHM 1056
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------K 274
DK+ R G Q L +P+ R R GG+ FGEM+ DC IAHGAS L ERL
Sbjct: 1057 VNDKIHSRARGPVQLLNRQPMEGRSRDGGLRFGEMERDCQIAHGASQFLKERLFEVSDPY 1116
Query: 275 CKNVANV-----IQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V N+ + + + CR C++ +I + +PY KLL QEL SM I +
Sbjct: 1117 RVHVCNLCGLICVANLTSNSFECRSCSNKTNISQVRMPYACKLLFQEL-MSMQIAPRM 1173
>gi|440793499|gb|ELR14681.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
str. Neff]
Length = 1139
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 133/315 (42%), Gaps = 65/315 (20%)
Query: 57 GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV 116
G H + K E +V +V + VSI+ +N + +GDKF+S HGQKGV
Sbjct: 848 GKPHLHRYKSKEEAVVDEVRVVGTSSKGLIQRVSIKLRLN--RNPVIGDKFASRHGQKGV 905
Query: 117 LGFL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFAT 149
+ L E P A L+E+ K GA G+ ATPF
Sbjct: 906 MSQLWPQENMPFSESGMSPDVIINPHAFPSRMTIAMLIESMASKSGALHGMFQDATPFR- 964
Query: 150 STGGVITEQHQS--FVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLI 207
E+H + + Q L G G PM C +R+ I
Sbjct: 965 -----FDEKHTAVDYFGQQLLAAGYNYYG--------------NEPMYSGILGCELRADI 1005
Query: 208 FTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASG 267
+ + +YQ+ HM +DK + R+TG LT +P+ R++ GGI FGEM+ DCL+AHG S
Sbjct: 1006 YLGVVYYQRLRHMVKDKYQVRSTGPVHQLTQQPIKGRQKGGGIRFGEMERDCLLAHGTSF 1065
Query: 268 NLHERL----------KCKNVANVIQRVVGGP---YCRICNSADDIIKANVPYGAKLLSQ 314
L +RL CK ++I V C C S D + +PY + L
Sbjct: 1066 LLQDRLFKCSDYSRSWACKGCGSIISPVNTKDRKVMCTFCESKDGVTAITIPYVFRYLVN 1125
Query: 315 ELSFSMGITLKFDTQ 329
EL+ +M I + + Q
Sbjct: 1126 ELA-AMNIRITMNIQ 1139
>gi|344229872|gb|EGV61757.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
tenuis ATCC 10573]
Length = 1165
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 131/295 (44%), Gaps = 60/295 (20%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 122
K E V +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 892 KGPEPSYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQKGVCGIIVQQE 947
Query: 123 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 157
T +++E GK G +G + Y T F GG +
Sbjct: 948 DLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF----GGSDLQ 1003
Query: 158 QHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQF 217
+S++L G SG ++ CL ++ IF +YQ+
Sbjct: 1004 D----MSEILVQNGFNYSGKDMLYSGITGECL--------------QAYIFFGPIYYQKL 1045
Query: 218 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK- 276
HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL
Sbjct: 1046 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSS 1105
Query: 277 -----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V N + +C CNS++ +IK +PY AKLL QEL SM I +
Sbjct: 1106 DAFEVDVCNKCGLMGHNNWCTSCNSSEHVIKMTIPYAAKLLFQEL-ISMNIAPRL 1159
>gi|341581876|ref|YP_004762368.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
gi|340809534|gb|AEK72691.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
Length = 1122
Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats.
Identities = 100/336 (29%), Positives = 154/336 (45%), Gaps = 55/336 (16%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V KD+ V ++ P F + QS G I++ + E S+ ++ +ERG+V KV
Sbjct: 802 ESKVTGKDVLVGRTSPP----RFLEEQSGLGGIILQERRET----SVTVRPSERGIVDKV 853
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V+ R + GDKF+S HGQKGV+G + P + +
Sbjct: 854 IITETGDGTKLVKVTTRD----LRIPEFGDKFASRHGQKGVVGLI--VPQEDMPWTESGI 907
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ G R G FI
Sbjct: 908 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVAALTGRRVDGTAFIGEPEEKLRKELEEL 963
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 964 GFKHSGREVMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1018
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV 286
P R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R
Sbjct: 1019 PTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKR-R 1077
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
G YC +C + I K + Y KLL EL +MGI
Sbjct: 1078 GKVYCPVCGEEEKISKVEMSYAFKLLLDELK-AMGI 1112
>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1157
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 130/295 (44%), Gaps = 60/295 (20%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 122
K E V +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 884 KGPEPSYVDQVMMSVSDNDQALVKVLLRQT----RRPELGDKFSSRHGQKGVCGIIVQHE 939
Query: 123 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 157
T +++E GK G +G + Y T F GG E
Sbjct: 940 DLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCF----GGSKLE 995
Query: 158 QHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQF 217
+S++L G SG ++ CL ++ IF +YQ+
Sbjct: 996 D----MSKILVSKGFSYSGKDMLYSGITGECL--------------QAYIFFGPIYYQKL 1037
Query: 218 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK- 276
HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL
Sbjct: 1038 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISS 1097
Query: 277 -----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V N + +C C +++IIK +PY AKLL QEL SM I +
Sbjct: 1098 DAFEVDVCNKCGLMGYNSWCTTCKGSENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1151
>gi|150401219|ref|YP_001324985.1| DNA-directed RNA polymerase subunit B' [Methanococcus aeolicus
Nankai-3]
gi|150013922|gb|ABR56373.1| RNA polymerase Rpb2 domain 6 [Methanococcus aeolicus Nankai-3]
Length = 611
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 168/401 (41%), Gaps = 89/401 (22%)
Query: 1 MNQASLECGVFRSESYKA-----------EVDNKDIQVKS----RPSDDMLNFG-----K 40
+N+AS+E G+ RS +++ +VD +I + R + N G +
Sbjct: 225 INKASIERGLARSSFFRSYEGFEKRHPGGQVDRFEIPEQGVRGYRAEEAYRNLGDDGIVE 284
Query: 41 IQS--KSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
++S KSGD++IGK + D SI ++H E G+V V+LS +G
Sbjct: 285 VESEVKSGDVIIGKTSPPRFLEEQDISLRSKSQRRDTSITIRHGEGGIVDAVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
A + +R + LGDKF+S HGQKGVLG + P + + D +++
Sbjct: 345 NRLAKIRVRD----LRIPELGDKFASRHGQKGVLGLI--VPQEDMPFTENGVVPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FKHYFLF 187
+A P + G V+ S +NC R G F +KH
Sbjct: 399 HAIPSRMTIGQVLEMIGGKVGS--MNC--KRIDGTIFSGDPEWELRSSMEKCGYKHNGKE 454
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+F+ + IF I +YQ+ H+ K+ R+ G Q LT +P R R
Sbjct: 455 VMFDGKTGK-----KLECEIFVGIAYYQKLHHLVAGKMHARSRGPIQVLTRQPTEGRARE 509
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRIC 294
GG+ FGEM+ D LI HG + L ERL C VA + G C+ C
Sbjct: 510 GGLRFGEMERDVLIGHGTALLLKERLFDESDPYECHICSNCGEVA-IYDHKRGMKRCQAC 568
Query: 295 NSADD------IIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+D I +PY KLL EL SMGI K + +
Sbjct: 569 GETEDVQNNRKIPSVRLPYAFKLLLDELR-SMGINPKLELK 608
>gi|322710723|gb|EFZ02297.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
anisopliae ARSEF 23]
Length = 1157
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 135/306 (44%), Gaps = 58/306 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D +I + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 872 DSAISYRIPDPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 927
Query: 119 FL---EQTP-----------------------AQLLEAALGKGAC-DGLMSYATPFATST 151
+ E P +LLE GK + DG Y
Sbjct: 928 IIVDQEDMPFADNGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIIDGRPDYGF------ 981
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G +SQ+L + G ++ K YF L P++ + IF
Sbjct: 982 GDAFRSHPVKDMSQVL-----LDYGFSWEGKDYFTSGLTGEPLE---------AYIFNGP 1027
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1028 IYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLE 1087
Query: 272 RLKCKN---VANVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITL 324
RL + ++ Q+ + G YC C S + + +PY AKLL QEL S ++G+ L
Sbjct: 1088 RLMLSSDGVTLDICQQCGLFGYKGYCNTCKSTRQVTQMQMPYAAKLLVQELISMNVGVRL 1147
Query: 325 KFDTQL 330
+ + +
Sbjct: 1148 QLEDEF 1153
>gi|320593507|gb|EFX05916.1| DNA-directed RNA polymerase beta [Grosmannia clavigera kw1407]
Length = 1165
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 145/322 (45%), Gaps = 45/322 (13%)
Query: 44 KSGDIVIGKYAE-------IGADH--------SIKLKHTERGLVLKVLLSSNDDGKNFAV 88
+ GD++I K + IGAD S+ + + V KV++S +
Sbjct: 850 QHGDVMIKKESPVDLTTTGIGADRGSNEYRDSSLTYRINDPSYVDKVMVSQTEKDTLIFK 909
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATPF 147
V RQ+ +GDKFSS HGQKGV+G + EQ ++ L D +M+ P
Sbjct: 910 VQTRQT----RRPEIGDKFSSRHGQKGVVGIIVEQEDMPFADSGL---VPDIIMN---PH 959
Query: 148 ATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM----DWIAFICL- 202
+ + + + + G R+ G F+ + + + E + W C
Sbjct: 960 GYPSRMTVGKLFECLTGKASVVAGRRDYGYGDAFRSHPVEAMGEELVRHGFSWAGKDCFT 1019
Query: 203 -------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 255
+ + IF +YQ+ HM +DK+ R G LT +P R R GG+ GEM
Sbjct: 1020 SGTTGEPMEAHIFNGPIYYQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSRDGGLRLGEM 1079
Query: 256 KCDCLIAHGASGNLHERLKCKNVANVIQR-----VVGGP-YCRICNSADDIIKANVPYGA 309
+ DCLIA+GAS L ERL + A + + G YC+ C S D+ + +PY A
Sbjct: 1080 ERDCLIAYGASQLLLERLMFSSDATSLDLCQHCGLFGYKGYCQTCRSTRDVTQMTMPYAA 1139
Query: 310 KLLSQEL-SFSMGITLKFDTQL 330
KLL QEL S ++G+ L+ + +
Sbjct: 1140 KLLVQELISMNVGVRLQLEDEF 1161
>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
[Trachipleistophora hominis]
Length = 1381
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 167/411 (40%), Gaps = 120/411 (29%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP-----------------SDDMLN 37
MNQ++++ G+FRS Y+ D + ++V ++P D ++N
Sbjct: 994 MNQSAIDRGLFRSFLYRTYTDQETMNGPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVN 1053
Query: 38 FGKIQSKSGDIVIGKYAEI-----------------------------GADHSIKLKHTE 68
G ++ D++IGK + D S ++ TE
Sbjct: 1054 PG-VRVTGEDVLIGKILPVIERMDVNGNSLIDNRDEKINTESNTMNVSWKDASTAMRPTE 1112
Query: 69 RGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP- 124
G+V V+++ N +G F V IR +GDKF+S HGQKG +G E P
Sbjct: 1113 EGVVDSVIVT-NREGYKFTKVKIRS----CRVPEMGDKFASRHGQKGTIGITLRAEDMPF 1167
Query: 125 ----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQS 161
L+E LGK A G TPF+ T G I+EQ +
Sbjct: 1168 TSEGIIPDIIINPHCIPSRMTIGHLIECLLGKVSALAGEEGDGTPFSDVTVGAISEQLKD 1227
Query: 162 FVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMS 221
F G + G+ ++ L + IF T+YQ+ HM
Sbjct: 1228 F--------GYEHRGLETMYNGMTGRKL--------------DAQIFIGPTYYQRLKHMV 1265
Query: 222 EDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANV 281
+DKV R G Q LT +P R R GG+ FGEM+ DC+I+HG S L ERL V++
Sbjct: 1266 QDKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDCIISHGTSLFLRERL--FEVSDF 1323
Query: 282 IQRVV---GGPY-----CRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
VV G + C+ C + + +PY KLL QEL MG+ +
Sbjct: 1324 FSLVVCEQCGLFCLEDGCKGCGNKTKLAIVEMPYAFKLLLQEL---MGMNI 1371
>gi|389860840|ref|YP_006363080.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
1633]
gi|388525744|gb|AFK50942.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
1633]
Length = 1151
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 139/337 (41%), Gaps = 80/337 (23%)
Query: 46 GDIVIGKYA--------------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSI 91
GD++IGK + ++ D S+ ++H E+G+V V+++++ DG V +
Sbjct: 837 GDVLIGKVSPSRFMITQELTGSEQVKQDTSVVMRHEEKGIVDVVMITTDSDGNKLVKVRV 896
Query: 92 RQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPA 125
R + LGDKF+S HGQKGV+G + T
Sbjct: 897 RD----LRIPELGDKFASRHGQKGVVGLIIPQYDMPFTEDGITPDLIINPHAFPSRMTVG 952
Query: 126 QLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHY 184
QL+E+ GK A +G + TPF E + + + +H
Sbjct: 953 QLIESIAGKVAALEGRLVDGTPF-------FKEDPEKL--------------MVVLKRHG 991
Query: 185 FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 244
+ E D L+R+ +F I +YQ+ HM DK+ R G Q LT +P R
Sbjct: 992 YPETGEEAMYDGRTG-ELMRAPVFIGIVYYQKLHHMVSDKIHARARGPVQILTRQPTEGR 1050
Query: 245 KRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRVVGGPYCR 292
R GG+ +GEM+ DCL+ HGA+ L E + ++ VI R+ C
Sbjct: 1051 ARAGGLRWGEMEVDCLVGHGAASLLKETMIDRSDKAVIYVCELCGHIGYYDRIRDRYVCP 1110
Query: 293 ICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ + V Y KLL QEL SM I + +
Sbjct: 1111 VHKEKGVLKPVEVSYSFKLLIQEL-MSMAIMPRLKLE 1146
>gi|254573076|ref|XP_002493647.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
GS115]
gi|238033446|emb|CAY71468.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
GS115]
gi|328354525|emb|CCA40922.1| DNA-directed RNA polymerase II subunit B [Komagataella pastoris CBS
7435]
Length = 1158
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 144/335 (42%), Gaps = 77/335 (22%)
Query: 44 KSGDIVIGKYAEIGADHSI----------KLKHTERGLVLKVLLSSNDD------GKNFA 87
+SG + + K+ I ++ SI K +H E +V + S D G+N
Sbjct: 845 ESGQVYVNKFVPINSEESIIGQTPDDSQRKEQHRETPMVYRGPEPSYIDQMMMSLGENDQ 904
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ------------------------- 122
V+ ++ + LGDKFSS HGQKGV G + Q
Sbjct: 905 VL-VKALLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSR 963
Query: 123 -TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN--SGIT 178
T +++E GK G DG + Y T F G + E Q + + + G SGIT
Sbjct: 964 MTVGKMIELISGKAGVLDGSLQYGTCFG---GSDLKEMSQILIDKGFSYSGKDQLYSGIT 1020
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
EC +++ IF +YQ+ HM DK+ R+ G LT
Sbjct: 1021 G-----------EC----------LQAYIFFGPIYYQKLKHMVLDKMHARSRGPRAVLTR 1059
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCR 292
+P R R GG+ GEM+ DC++A+GAS L ERL +V N + +C
Sbjct: 1060 QPTEGRSRDGGLRLGEMERDCVVAYGASQLLLERLMISSDAFEVDVCNTCGLMGYNGWCP 1119
Query: 293 ICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C S++ IIK +PY AKLL QEL SM I + +
Sbjct: 1120 TCKSSEFIIKMTIPYAAKLLFQEL-VSMNIAPRLE 1153
>gi|315230005|ref|YP_004070441.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
gi|315183033|gb|ADT83218.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
Length = 1118
Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats.
Identities = 98/330 (29%), Positives = 153/330 (46%), Gaps = 54/330 (16%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V KD+ V ++ P F + QS G I++ + E SI ++ +E+G+V KV
Sbjct: 798 ESKVSGKDVLVGRTSPP----RFLEEQSGLGGIILQERRET----SIAVRPSEKGVVDKV 849
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 850 IITETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGI 903
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 904 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRIDGTAFIGEPEEKLRKELEEL 959
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 960 GFKHSGREIMY----DGITGRRL-EADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1014
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV 286
P R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R
Sbjct: 1015 PTEGRAREGGLRFGEMERDVLIGHGAAMLLVERLLEESDKTEVWVCETCGHLALEDKR-R 1073
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQEL 316
G YC +C + I K + Y KLL EL
Sbjct: 1074 GQVYCPVCGETEKISKVEMSYAFKLLLDEL 1103
>gi|429191195|ref|YP_007176873.1| DNA-directed RNA polymerase subunit B [Natronobacterium gregoryi
SP2]
gi|448326614|ref|ZP_21515963.1| DNA-directed RNA polymerase subunit B' [Natronobacterium gregoryi
SP2]
gi|242392378|dbj|BAH80402.1| RNA polymerase subunit B' [Natronobacterium gregoryi SP2]
gi|429135413|gb|AFZ72424.1| DNA-directed RNA polymerase subunit B [Natronobacterium gregoryi
SP2]
gi|445610906|gb|ELY64671.1| DNA-directed RNA polymerase subunit B' [Natronobacterium gregoryi
SP2]
Length = 609
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 131/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTEDGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + L E D + V + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDEEDLRDGLEEAGFDAAGKETMYSGITGEKVEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREYIPICGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|150402531|ref|YP_001329825.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
C7]
gi|150033561|gb|ABR65674.1| RNA polymerase Rpb2 domain 6 [Methanococcus maripaludis C7]
Length = 611
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 171/410 (41%), Gaps = 111/410 (27%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFG------ 39
+N+ASLE G+ RS SY++ ++D ++ K R + N G
Sbjct: 225 INKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLID 284
Query: 40 -KIQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + +SGD+++GK + EI D S+ ++H E G+V V+LS +G
Sbjct: 285 LESEVRSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + GDKF+S HGQKGV+G + P + L D +++
Sbjct: 345 NRLGKVRVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITFI-------------- 180
+A P + G Q+L IG R G F
Sbjct: 399 HAIPSRMTIG------------QVLEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKY 446
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSL---IFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
FKH+ +++ R L IF + +YQ+ H+ K+ R+ G Q L
Sbjct: 447 GFKHHAKEAMYDGKSG--------RKLECDIFVGVAYYQKLHHLVAGKIHARSRGPIQVL 498
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +P R R GG+ FGEM+ D L+AHGA+ L ERL KC +A +
Sbjct: 499 TRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVCAKCGEIA-IFD 557
Query: 284 RVVGGPYCRICNSADD------IIKANVPYGAKLLSQELSFSMGITLKFD 327
G +C +C ++D I + Y KLL EL SMGI K +
Sbjct: 558 YKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELK-SMGIDPKLE 606
>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
Length = 1134
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 131/301 (43%), Gaps = 60/301 (19%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K TE +VL+S+N++ + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 859 ITYKGTEPSYAERVLVSTNNEEEFLVKILLRQT----RRPEIGDKFSSRHGQKGVTGLIV 914
Query: 121 -------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGV 154
T + LE K G +G Y T F GG
Sbjct: 915 DQEDLPFNDYGMAPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAF----GGS 970
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
+ Q + Q +G ++ K F + P++ I++ +Y
Sbjct: 971 KCQDLQDELFQ---------NGFNYLGKDVFYSGITGEPLE---------VYIYSGPVYY 1012
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 1013 QKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 1072
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+V NV R+ +C C S+ + K ++PY KLL QEL+ SM I +
Sbjct: 1073 ISSDAFDVDVCNVCGRLAYSSWCHNCRSSASVSKISMPYACKLLFQELT-SMNIVPRLKL 1131
Query: 329 Q 329
Q
Sbjct: 1132 Q 1132
>gi|448282779|ref|ZP_21474061.1| DNA-directed RNA polymerase subunit B' [Natrialba magadii ATCC
43099]
gi|242392364|dbj|BAH80395.1| RNA polymerase subunit B' [Natrialba magadii]
gi|445575394|gb|ELY29869.1| DNA-directed RNA polymerase subunit B' [Natrialba magadii ATCC
43099]
Length = 609
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 129/293 (44%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V + L +DG + VS+R LGDKF+S HGQKGVLG L
Sbjct: 326 SVTMRSGESGVVDTITLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVLGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTENGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 IFKHYFLF--CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + L E D + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESALRDGLEEAGFDSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCEEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|195485554|ref|XP_002091138.1| GE12399 [Drosophila yakuba]
gi|194177239|gb|EDW90850.1| GE12399 [Drosophila yakuba]
Length = 1137
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 150/342 (43%), Gaps = 70/342 (20%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V NK I + K P+ +N +Q +S + Y + I K E V +V++
Sbjct: 827 QVQNKQIMINKEMPAVTSMN--PLQGQSAQV---PYTAV----PISYKGPEPSYVERVMV 877
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ-------------- 122
S+N + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 878 SANSEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDM 933
Query: 123 -----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
T + LE GK G +G Y T F GG E Q+ + +
Sbjct: 934 IMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQAELER----- 984
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G ++ K +F + P++ + I++ +YQ+ HM +DK+ R
Sbjct: 985 ----HGFNYVGKDFFYSGITGTPLE---------AYIYSGPVYYQKLKHMVQDKMHARAR 1031
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQR 284
G LT +P R R GG+ GEM+ DCLI++GAS + ERL +V R
Sbjct: 1032 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1091
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ ++ K ++PY KLL QEL+ SM + K
Sbjct: 1092 LAYCSWCHFCQSSANVSKISMPYACKLLFQELT-SMNVVPKM 1132
>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Strongylocentrotus purpuratus]
Length = 1142
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 129/300 (43%), Gaps = 70/300 (23%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S ++ TE G++ +V++S N DG F + +R V + +GDKF+S HGQKG G
Sbjct: 857 DCSTFMRSTETGIIDQVMVSINQDGYKFCKIKVRS----VRTPQIGDKFASRHGQKGTCG 912
Query: 119 F---LEQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
+E P L+E GK + G + ATPF S
Sbjct: 913 IKYRVEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSSKGEIGDATPFNDSV 972
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ +S LL+ G G + LFC F + + +F
Sbjct: 973 -------NVQKISNLLHEYGYHQRG------NEVLFCGFTGRK--------IGTQVFLGP 1011
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC I+HGA+ L E
Sbjct: 1012 TYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRE 1071
Query: 272 RL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C +AN+ CR C + I + +PY KLL QEL
Sbjct: 1072 RLFEVSDPYRVHVCNFCGLIAIANLRNNTFE---CRGCKNKTQISQVRLPYACKLLFQEL 1128
>gi|448354756|ref|ZP_21543511.1| DNA-directed RNA polymerase subunit B' [Natrialba hulunbeirensis
JCM 10989]
gi|242392362|dbj|BAH80394.1| RNA polymerase subunit B' [Natrialba hulunbeirensis]
gi|445637087|gb|ELY90243.1| DNA-directed RNA polymerase subunit B' [Natrialba hulunbeirensis
JCM 10989]
Length = 609
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 129/293 (44%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V + L +DG + VS+R LGDKF+S HGQKGVLG L
Sbjct: 326 SVTMRSGESGVVDTITLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVLGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTENGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 IFKHYFLF--CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + L E D + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESALREGLEEAGFDSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCEEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|448356451|ref|ZP_21545184.1| DNA-directed RNA polymerase subunit B' [Natrialba chahannaoensis
JCM 10990]
gi|242392360|dbj|BAH80393.1| RNA polymerase subunit B' [Natrialba chahannaoensis]
gi|445653484|gb|ELZ06355.1| DNA-directed RNA polymerase subunit B' [Natrialba chahannaoensis
JCM 10990]
Length = 609
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 129/293 (44%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V + L +DG + VS+R LGDKF+S HGQKGVLG L
Sbjct: 326 SVTMRSGESGVVDTITLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVLGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTENGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 IFKHYFLF--CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + L E D + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESALRDGLEEAGFDSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCEEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|134045261|ref|YP_001096747.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
C5]
gi|132662886|gb|ABO34532.1| DNA-directed RNA polymerase, subunit B' [Methanococcus maripaludis
C5]
Length = 611
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 169/403 (41%), Gaps = 97/403 (24%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFG------ 39
+N+ASLE G+ RS SY++ ++D ++ K R D N G
Sbjct: 225 INKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEDAYRNLGDDGLID 284
Query: 40 -KIQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ +SGD+++GK + EI D S+ ++H E G+V V+LS +G
Sbjct: 285 LESNVRSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + GDKF+S HGQKGV+G + P + L D +++
Sbjct: 345 NRLGKVRVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITF-----------IFKH 183
+A P + G Q+L IG R G F + K+
Sbjct: 399 HAIPSRMTIG------------QVLEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKY 446
Query: 184 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
F E D + L IF + +YQ+ H+ K+ R+ G Q LT +P
Sbjct: 447 GFEHHAKEAMYDGKSGRKL-ECDIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEG 505
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY 290
R R GG+ FGEM+ D L+AHGA+ L ERL KC +A + G +
Sbjct: 506 RAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKF 564
Query: 291 CRICNSADD------IIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C ++D I + Y KLL EL SMGI K +
Sbjct: 565 CPVCGESEDIQDNRKIPPVKIAYAFKLLLDELK-SMGIDPKLE 606
>gi|448388148|ref|ZP_21565088.1| DNA-directed RNA polymerase subunit B' [Haloterrigena salina JCM
13891]
gi|445670799|gb|ELZ23396.1| DNA-directed RNA polymerase subunit B' [Haloterrigena salina JCM
13891]
Length = 609
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRDGLEDAGFDSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|346972359|gb|EGY15811.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium dahliae
VdLs.17]
Length = 1160
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 133/306 (43%), Gaps = 58/306 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI + + + KV++S ++ V RQ+ LGDKFSS HGQKGV+G
Sbjct: 874 DSSISYRIPDPAYIDKVMISQSEKDNMVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 929
Query: 119 FL-EQ-------------------------TPAQLLEAALGKGAC-DGLMSYATPFATST 151
+ EQ T +LLE GK + DG Y
Sbjct: 930 IIVEQEDLPFSDKGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRPDYGF------ 983
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G +S+ L + G ++ K YF + P++ + IF
Sbjct: 984 GDAFRSHPLKQMSEAL-----VDHGFSWEGKDYFTSGITGEPLE---------AYIFNGP 1029
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1030 IYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQLLLE 1089
Query: 272 RLKCKNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITL 324
RL + I + G YC C S ++ K +PY AKLL QEL S ++G+ L
Sbjct: 1090 RLMISSDGTEIDICQQCGLFGYKGYCHTCRSTKEVTKMTMPYAAKLLVQELISMNVGVRL 1149
Query: 325 KFDTQL 330
+ + +
Sbjct: 1150 QMEDEF 1155
>gi|340624672|ref|YP_004743125.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
X1]
gi|339904940|gb|AEK20382.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
X1]
Length = 611
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 170/403 (42%), Gaps = 97/403 (24%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFG------ 39
+N+ASLE G+ RS SY++ ++D ++ K R + N G
Sbjct: 225 INKASLERGLGRSSFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLID 284
Query: 40 -KIQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + KSGD+++GK + EI D S+ ++H E G+V V+LS +G
Sbjct: 285 LESEVKSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + GDKF+S HGQKGV+G + P + L D +++
Sbjct: 345 NRLGKVRVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITF-----------IFKH 183
+A P + G Q+L IG R G F + K+
Sbjct: 399 HAIPSRMTIG------------QVLEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKY 446
Query: 184 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
F E D + L IF + +YQ+ H+ K+ R+ G Q LT +P
Sbjct: 447 GFEHHAKEAMYDGKSGRKL-ECDIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEG 505
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY 290
R R GG+ FGEM+ D L+AHGA+ L ERL KC +A + G +
Sbjct: 506 RAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKF 564
Query: 291 CRICNSADD------IIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C ++D I + Y KLL EL SMGI K +
Sbjct: 565 CPVCGESEDIQDNRKIPPVKIAYAFKLLLDELK-SMGIDPKLE 606
>gi|435845618|ref|YP_007307868.1| DNA-directed RNA polymerase, subunit B' [Natronococcus occultus
SP4]
gi|242392384|dbj|BAH80405.1| RNA polymerase subunit B' [Natronococcus occultus SP4]
gi|433671886|gb|AGB36078.1| DNA-directed RNA polymerase, subunit B' [Natronococcus occultus
SP4]
Length = 609
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 131/296 (44%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + +L G R G
Sbjct: 382 --APQEDM-PFTEEGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTP 434
Query: 179 FIFKHY--FLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F+ + L E D + + + IF I FYQ+ HM +K+ R
Sbjct: 435 FLGEDESELREGLEEAGFDSAGKETMYSGITGEKIEAEIFVGIIFYQKLYHMVSNKLHAR 494
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 495 SRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCGQC 554
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 555 GMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|380493500|emb|CCF33834.1| DNA-directed RNA polymerase III subunit RPC2 [Colletotrichum
higginsianum]
Length = 1151
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 133/308 (43%), Gaps = 62/308 (20%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 866 DSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQT----RRPELGDKFSSRHGQKGVVG 921
Query: 119 FL--------------------------EQTPAQLLEAALGKGAC-DGLMSYATPFATST 151
+ T +LLE GK + DG Y F
Sbjct: 922 IIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRKDYG--FG--- 976
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
+F S L + A + G ++ K YF + P++ + IF
Sbjct: 977 --------DAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLE---------AYIFN 1019
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1020 GPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLL 1079
Query: 270 HERLKCKNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGI 322
ERL + I + G YC C S ++ + +PY AKLL QEL S ++G+
Sbjct: 1080 LERLMISSDGTQIDICQQCGLFGYKGYCHTCKSTREVTQMTMPYAAKLLVQELISMNVGV 1139
Query: 323 TLKFDTQL 330
L+ + +
Sbjct: 1140 RLQLEDEF 1147
>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
5456]
gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
5456]
Length = 1138
Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats.
Identities = 107/394 (27%), Positives = 158/394 (40%), Gaps = 106/394 (26%)
Query: 1 MNQASLECGVFRSE----------------SYKAEVDNKDIQVKSRPSD-------DMLN 37
MN++S++ G+ RS S K E+ +++ S+P + D +
Sbjct: 754 MNKSSIDRGLARSTFFRLYATEERRYPGGLSDKIEIPEANVE-GSKPPEMYKKLDADGII 812
Query: 38 FGKIQSKSGDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDD 82
+++ K G+++IGK Y E G D S+ ++H E+G+V V+++ N +
Sbjct: 813 SPEVEVKGGEVLIGKTSPPRFMEEYREFGTVTVRKRDTSVTMRHGEKGVVDTVIITENIE 872
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---------------------- 120
G V +R LGDKF+S HGQKGV+G L
Sbjct: 873 GYKLVKVRVRDQ----RIPELGDKFASRHGQKGVIGMLIPQYDMPFTEDGITPDLIINPH 928
Query: 121 ----EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
T QL E GK A TPFA E ++ +LL G
Sbjct: 929 AFPSRMTLGQLFETIAGKYAAIYARFVDGTPFAK-------ESIENLRIELLK-TGYAPD 980
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ ++R+ I + +YQ+ HM DK+ R G Q
Sbjct: 981 GTEIMYDGRTGE--------------MIRTPILIGLVYYQKLHHMVADKIHARARGPVQV 1026
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +P R R GG+ FGEM+ DCL+ HGA+ L ER+ C ++A
Sbjct: 1027 LTRQPTEGRAREGGLRFGEMERDCLVGHGAAMLLRERMLESSDRYVLYVCELCGHIA-WF 1085
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
R G C + I VPY KLL QEL
Sbjct: 1086 DRNKRGYICPVHGDKGKIAAVIVPYAFKLLLQEL 1119
>gi|284163647|ref|YP_003401926.1| DNA-directed RNA polymerase subunit B [Haloterrigena turkmenica DSM
5511]
gi|284013302|gb|ADB59253.1| DNA-directed RNA polymerase subunit B [Haloterrigena turkmenica DSM
5511]
Length = 609
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRDGLEDAGFDSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|194883820|ref|XP_001975995.1| GG20240 [Drosophila erecta]
gi|190659182|gb|EDV56395.1| GG20240 [Drosophila erecta]
Length = 1137
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 150/342 (43%), Gaps = 70/342 (20%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V NK I + K P+ +N +Q +S + Y + I K E V +V++
Sbjct: 827 QVQNKQIMINKEMPAVTSMN--PLQGQSAQV---PYTAV----PISYKGPEPSYVERVMV 877
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ-------------- 122
S+N + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 878 SANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDM 933
Query: 123 -----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
T + LE GK G +G Y T F GG E Q+ + +
Sbjct: 934 IMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQAELER----- 984
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G ++ K +F + P++ + I++ +YQ+ HM +DK+ R
Sbjct: 985 ----HGFNYVGKDFFYSGITGAPLE---------AYIYSGPVYYQKLKHMVQDKMHARAR 1031
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQR 284
G LT +P R R GG+ GEM+ DCLI++GAS + ERL +V R
Sbjct: 1032 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1091
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ ++ K ++PY KLL QEL+ SM + K
Sbjct: 1092 LAYCSWCHFCQSSANVSKISMPYACKLLFQELT-SMNVVPKM 1132
>gi|310798473|gb|EFQ33366.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
Length = 1151
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 133/308 (43%), Gaps = 62/308 (20%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 866 DSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQT----RRPELGDKFSSRHGQKGVVG 921
Query: 119 FL--------------------------EQTPAQLLEAALGKGAC-DGLMSYATPFATST 151
+ T +LLE GK + DG Y F
Sbjct: 922 IIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRKDYG--FG--- 976
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
+F S L + A + G ++ K YF + P++ + IF
Sbjct: 977 --------DAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLE---------AYIFN 1019
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1020 GPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLL 1079
Query: 270 HERLKCKNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGI 322
ERL + I + G YC C S ++ + +PY AKLL QEL S ++G+
Sbjct: 1080 LERLMISSDGTQIDICQQCGLFGYKGYCHTCKSTREVTQMTMPYAAKLLVQELISMNVGV 1139
Query: 323 TLKFDTQL 330
L+ + +
Sbjct: 1140 RLQLEDEF 1147
>gi|302412759|ref|XP_003004212.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium albo-atrum
VaMs.102]
gi|261356788|gb|EEY19216.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium albo-atrum
VaMs.102]
Length = 1105
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 133/306 (43%), Gaps = 58/306 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI + + + KV++S ++ V RQ+ LGDKFSS HGQKGV+G
Sbjct: 819 DSSISYRIPDPAYIDKVMISQSEKDNMVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 874
Query: 119 FL-EQ-------------------------TPAQLLEAALGKGAC-DGLMSYATPFATST 151
+ EQ T +LLE GK + DG Y
Sbjct: 875 IIVEQEDLPFSDKGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRPDYGF------ 928
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G +S+ L + G ++ K YF + P++ + IF
Sbjct: 929 GDAFRSHPLKQMSEAL-----VDHGFSWEGKDYFTSGITGEPLE---------AYIFNGP 974
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 975 IYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQLLLE 1034
Query: 272 RLKCKNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITL 324
RL + I + G YC C S ++ K +PY AKLL QEL S ++G+ L
Sbjct: 1035 RLMISSDGTEIDICQQCGLFGYKGYCHTCRSTKEVTKMTMPYAAKLLVQELISMNVGVRL 1094
Query: 325 KFDTQL 330
+ + +
Sbjct: 1095 QMEDEF 1100
>gi|159905694|ref|YP_001549356.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
C6]
gi|159887187|gb|ABX02124.1| RNA polymerase Rpb2 domain 6 [Methanococcus maripaludis C6]
Length = 611
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 170/403 (42%), Gaps = 97/403 (24%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFG------ 39
+N+ASLE G+ RS SY++ ++D ++ K R + N G
Sbjct: 225 INKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLID 284
Query: 40 -KIQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + +SGD+++GK + EI D S+ ++H E G+V V+LS +G
Sbjct: 285 LESEVRSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + GDKF+S HGQKGV+G + P + L D +++
Sbjct: 345 NRLGKVRVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITF-----------IFKH 183
+A P + G Q+L IG R G F + K+
Sbjct: 399 HAIPSRMTIG------------QVLEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKY 446
Query: 184 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
F E D + L IF I +YQ+ H+ K+ R+ G Q LT +P
Sbjct: 447 GFEHHAKEAMYDGKSGRKL-ECDIFVGIAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEG 505
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY 290
R R GG+ FGEM+ D L+AHGA+ L ERL KC +A + G +
Sbjct: 506 RAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKF 564
Query: 291 CRICNSADD------IIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C ++D I + Y KLL EL SMGI K +
Sbjct: 565 CPVCGESEDIQDNRKIPPVKIAYAFKLLLDELK-SMGIDPKLE 606
>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
[Schizosaccharomyces pombe 972h-]
gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
polymerase III subunit 2; Short=RNA polymerase III
subunit C2; AltName: Full=C128; AltName:
Full=DNA-directed RNA polymerase III 130 kDa polypeptide;
AltName: Full=RPC130
gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
[Schizosaccharomyces pombe]
gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
Length = 1165
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 141/349 (40%), Gaps = 84/349 (24%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYAEIGA-DHSIKLKHT-----------------ERGLVL 73
DD L + + G I + K A D+SI L HT E G +
Sbjct: 839 EDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYID 898
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV+L++ D + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 899 KVMLTTTDSDQTLIKVLMRQT----RRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGI 954
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T +++E GK G G + Y T F G + + + V
Sbjct: 955 CPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFG---GTKVEDASRILVEHG 1011
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT + + IF +YQ+ HM DK
Sbjct: 1012 YNYSGKDMLTSGITG---------------------ETLEAYIFMGPIYYQKLKHMVMDK 1050
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR 284
+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A +
Sbjct: 1051 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVD- 1109
Query: 285 VVG-------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
V G +C C S +++K +PY AKLL QEL SM I +
Sbjct: 1110 VCGQCGLLGYKGWCNSCQSTREVVKMTIPYAAKLLFQEL-LSMNIVPRL 1157
>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
Length = 1260
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 140/307 (45%), Gaps = 65/307 (21%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 108
V +A+ D S+ L+ +E G+V +V+LS N G F V +R SV + + GDKF+
Sbjct: 966 VPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNSRGSRFTKVKVR-SVRIPQT---GDKFA 1021
Query: 109 SMHGQKGVLGFLEQT---------------------PAQ-----LLEAALGK-GACDGLM 141
S HGQKG +G +T P++ L+E LGK A G
Sbjct: 1022 SRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECLLGKTAAIFGGE 1081
Query: 142 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 201
ATPF G + + +S L+ +G G ++ + L
Sbjct: 1082 GDATPF---NGYAVLD-----ISNRLHSLGYERFGNERLYHGHTGRHL------------ 1121
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
SL+F T+YQ+ HM +DK+ R G LT +P+ + R GG+ FGEM+ DC+I
Sbjct: 1122 --PSLVFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMI 1179
Query: 262 AHGASGNLHERLKCKNVANVIQ------------RVVGGPYCRICNSADDIIKANVPYGA 309
+HGA+ L ERL ++ A + G C++C++ I + +PY
Sbjct: 1180 SHGAAHMLKERLFEQSDAYRVHVCDICGLVCTADLSRGNFECKLCDNKSRISQICIPYAC 1239
Query: 310 KLLSQEL 316
KLL QEL
Sbjct: 1240 KLLLQEL 1246
>gi|357289763|gb|AET73076.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 12T]
gi|357292563|gb|AET73899.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 14T]
Length = 1202
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 160/381 (41%), Gaps = 75/381 (19%)
Query: 2 NQASLECGVFRSESYKAEVD-------NKDIQVKSRPSD----DMLNFGKIQSK------ 44
N+ S++ G+F + Y E D N++++ K + N+ KI S+
Sbjct: 830 NKGSIDRGLFLATIYHTEKDEDKKLYGNEEMRCKPDKTKTKNMKFANYDKINSQGLVPEN 889
Query: 45 ----SGDIVIGKYAEIGA---DHSIKLKHT---------ERGLVLKVLLSSNDDGKNFAV 88
DI+I K I D++ +K+T E + K SN DG NF
Sbjct: 890 TLVEDRDIIIAKVLPIKENKNDYTKTIKYTDESHVHRTGEETFIDKNYSESNGDGYNFCK 949
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS--YATP 146
V +R V +GDKFSS HGQKG +G ++E DGL P
Sbjct: 950 VRLRS----VRRPVIGDKFSSRHGQKGTIG-------NIIEEKDMPFTADGLKPDIIINP 998
Query: 147 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-FK-----HYFLFCLFECPMDWIAFI 200
A + I + ++ + ++L +G G +F FK +E + + +
Sbjct: 999 HAIPSRMTIAQLKETLLGKVLIQMGLYGDGTSFSKFKIGDIASELQKLGYESNGNEVMYN 1058
Query: 201 CL----VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 256
L + S IF FYQ+ HM DK R+ G LT +P R R GG+ FGEM+
Sbjct: 1059 ALTGEQMPSSIFIGPAFYQRLKHMVNDKQHSRSIGPMVNLTRQPAEGRARDGGLRFGEME 1118
Query: 257 CDCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDII 301
DC+I+HGAS RL KC +A N Q++ C C + D
Sbjct: 1119 RDCMISHGASRFTKGRLYDASDAYSVHVCNKCGLIASYNKAQQI---HICNTCENRTDFR 1175
Query: 302 KANVPYGAKLLSQELSFSMGI 322
+PY KL+ QEL ++M I
Sbjct: 1176 YVEIPYSCKLMFQEL-YTMNI 1195
>gi|401623550|gb|EJS41646.1| ret1p [Saccharomyces arboricola H-6]
Length = 1149
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVMNGTLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
KOD1]
gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
KOD1]
Length = 1123
Score = 104 bits (260), Expect = 6e-20, Method: Composition-based stats.
Identities = 97/330 (29%), Positives = 153/330 (46%), Gaps = 54/330 (16%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V+ KD+ V ++ P F + QS G +V+ E S+ ++ +E+G+V KV
Sbjct: 803 ESKVEGKDVLVGRTSPP----RFIEEQSSLGSMVLQGRRET----SVTVRPSEKGVVDKV 854
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 855 IVTETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGI 908
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 909 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEEL 964
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 965 GFKHSGREIMY----DGITGRRL-EADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1019
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV 286
P R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R
Sbjct: 1020 PTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKR-R 1078
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQEL 316
G YC +C + I K + Y KLL EL
Sbjct: 1079 GKVYCPVCGEDERISKVEMSYAFKLLLDEL 1108
>gi|242392338|dbj|BAH80382.1| RNA polymerase subunit B' [Halostagnicola larsenii XH-48]
Length = 609
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 128/293 (43%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q EA + + +A P + G ++ + +L G R G F
Sbjct: 382 APQEDMPFTEAGVVPDLV--INPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + FE + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRGGLEESGFESSGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C+ DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|407926681|gb|EKG19645.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
phaseolina MS6]
Length = 1189
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 135/296 (45%), Gaps = 60/296 (20%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 122
K + V KVLL+ N+ + RQ+ LGDKFSS HGQKGV+G + +
Sbjct: 911 KLPDPAYVDKVLLTENESNTPVIKIQTRQT----RRPELGDKFSSRHGQKGVVGIIAEQI 966
Query: 123 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 157
T ++LE GK G +G + Y T F GG E
Sbjct: 967 DMPFNDQGICPDIIMNPHGFPSRMTVGKMLELLSGKAGVMNGELQYGTCF----GGSKAE 1022
Query: 158 QHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQF 217
+SQ+L G SG + I CL + F I +YQ+
Sbjct: 1023 D----MSQILLEAGFSYSGKDML-------------TSGITGECLPAYVFFGPI-YYQKL 1064
Query: 218 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN 277
HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL +
Sbjct: 1065 KHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSS 1124
Query: 278 VA---NVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKF 326
A +V +R ++G +C+ C S+ +++ +PY AKLL QE LS ++ +LK
Sbjct: 1125 DAHECDVCERCGMMGYQGWCQSCRSSKGVVRMTIPYAAKLLIQELLSMNVKASLKL 1180
>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1239
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 163/389 (41%), Gaps = 90/389 (23%)
Query: 2 NQASLECGVFRSESYK--AEVDNKDIQVKSRPS-----------------DDMLNFGKIQ 42
NQ+S++ G+FRS ++ +E KD + + P D ++N G Q
Sbjct: 852 NQSSIDRGIFRSAFFRTYSETQEKDERFEI-PDFKKCSGRKHGTYDKLDIDGLINPGN-Q 909
Query: 43 SKSGDIVIGKYAEI--------------GADH----------SIKLKHTERGLVLKVLLS 78
D++IGK I GAD S LKH+E G + +V+L+
Sbjct: 910 VSGDDVIIGKTTAIKMNENMNGNANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQVVLT 969
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACD 138
N+ G+ F + +R +GDKF+S HGQKG +G T Q +G
Sbjct: 970 VNEQGERFVKIKMRSE----RIPQIGDKFASRHGQKGTVGM---TYRQEDMPFTREGIVP 1022
Query: 139 GLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI----------FKHYFL 186
L+ +A P + G +I + S++ + G F
Sbjct: 1023 DLIINPHAIPSRMTIGHLI----ECLGSKVASLTGTEGDATPFQKVGVKDTVEQISKRLH 1078
Query: 187 FCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
C ++ + + + + +IF T+YQ+ HM DK+ R G Q LT +P
Sbjct: 1079 ECGYQLRGNEVMYNGFNGKKMEVMIFLGPTYYQRLKHMVADKIHSRGRGPTQILTRQPTE 1138
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VANVIQRVVG 287
R R GG+ FGEM+ DC+I+HGA+ L ERL C+ V N+ ++
Sbjct: 1139 GRSRDGGLRFGEMERDCMISHGAARFLKERLFDVSDFYRIHMCEVCGLICVGNLSEQRFE 1198
Query: 288 GPYCRICNSADDIIKANVPYGAKLLSQEL 316
C C + I + N+PY KLL QEL
Sbjct: 1199 ---CYNCQNTSKICQVNIPYACKLLMQEL 1224
>gi|448312201|ref|ZP_21501951.1| DNA-directed RNA polymerase subunit B' [Natronolimnobius
innermongolicus JCM 12255]
gi|242392388|dbj|BAH80407.1| RNA polymerase subunit B' [Natronolimnobius innermongolicus]
gi|445602708|gb|ELY56680.1| DNA-directed RNA polymerase subunit B' [Natronolimnobius
innermongolicus JCM 12255]
Length = 609
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 128/293 (43%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVIGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDESKLRDGLEDAGFNSAGKEVMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C+ DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|242392370|dbj|BAH80398.1| RNA polymerase subunit B' [Natrinema ejinorense]
Length = 609
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 128/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRQGLEDAGFNSAGKETMYSGISGEKIDAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|389624163|ref|XP_003709735.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
70-15]
gi|351649264|gb|EHA57123.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
70-15]
gi|440467179|gb|ELQ36417.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae Y34]
gi|440480743|gb|ELQ61392.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
P131]
Length = 1158
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 136/293 (46%), Gaps = 36/293 (12%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ + + + KV++S + A V RQ+ LGDKFSS HGQKGV+G +
Sbjct: 875 SLSYRVSNPSYIDKVMVSQTEKEHILAKVQTRQT----RRPELGDKFSSRHGQKGVVGII 930
Query: 121 -EQTPAQLLEAAL------GKGACDGLMSYATPFATSTGGV-ITEQHQ------SFVSQL 166
EQ ++ L M+ F TG I E ++ +F S
Sbjct: 931 VEQEDMPFADSGLVPDIIMNPHGFPSRMTVGKLFECLTGKASIVEGNRRYGYGDAFRSHP 990
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
+ +G G ++ K YF + P++ + +F +YQ+ HM +DK
Sbjct: 991 VEEMGKALIERGFSWEGKDYFTSGITGEPLE---------AYLFNGPIYYQRLKHMVQDK 1041
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI-- 282
+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A I
Sbjct: 1042 MHSRAKGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDATKIDI 1101
Query: 283 -QR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 330
QR + G YC+ C S ++ + +PY AKLL QEL S ++G+ L + +
Sbjct: 1102 CQRCGLFGYKGYCQTCKSTKEVTEMTMPYAAKLLVQELISMNVGVRLVLEDEF 1154
>gi|401018|sp|P31814.1|RPOB_THECE RecName: Full=DNA-directed RNA polymerase subunit B
gi|48140|emb|CAA47722.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 1122
Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats.
Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 53/335 (15%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V+ KD+ V ++ P F + QS G I++ + E S+ ++ +E G+V KV
Sbjct: 802 ESKVNGKDVLVGRTSPP----RFLEEQSGLGGIILQERRET----SLTVRPSETGVVDKV 853
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V+ R + GDKF+S HGQKGV+G + P + +
Sbjct: 854 IITETGDGTKLVKVTTRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMPWTESGI 907
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 908 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEEL 963
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + +F + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 964 GFKHSGREVMY----DGITGRRL-EADVFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1018
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVG 287
P R R GG+ FGEM+ D LI HGA+ L ERL C+N ++ + G
Sbjct: 1019 PTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRG 1078
Query: 288 GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
YC +C + I K + Y KLL EL +MGI
Sbjct: 1079 KVYCPVCGEEERISKVEMSYAFKLLLDELK-AMGI 1112
>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 1155
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 141/324 (43%), Gaps = 65/324 (20%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIK-----LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
+ + +G+ V+G ++ S + K E V +V++S +D+ + V +RQ+
Sbjct: 853 VPTNAGESVLGHNEQMAGAESHREAAAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQT- 911
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLE 129
LGDKFSS HGQKGV G + Q T +++E
Sbjct: 912 ---RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIE 968
Query: 130 AALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 188
GK G +G + Y T F GG E +S++L G SG ++ C
Sbjct: 969 LISGKAGVLNGSLEYGTCF----GGSKLED----MSKILVEKGFSYSGKDMLYSGITGEC 1020
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
L ++ IF +YQ+ HM DK+ R G LT +P R R G
Sbjct: 1021 L--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDG 1066
Query: 249 GIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIK 302
G+ GEM+ DC+IA+GAS L ERL +V N + +C C S + +IK
Sbjct: 1067 GLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSWCTTCKSFEHVIK 1126
Query: 303 ANVPYGAKLLSQELSFSMGITLKF 326
+PY AKLL QEL SM I +
Sbjct: 1127 MTIPYAAKLLFQEL-LSMNIAPRL 1149
>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
magnipapillata]
Length = 1184
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 132/307 (42%), Gaps = 65/307 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+ +E G+V +V+L+ N++G F + +R V +GDKF+S HGQKG G
Sbjct: 896 DASTFLRASETGIVDQVMLTINEEGYKFCKIKVRS----VRIPQIGDKFASRHGQKGTCG 951
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
E P L+E GK A G + ATPF +
Sbjct: 952 ITYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV 1011
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ VS LL G G ++ + L + +F
Sbjct: 1012 -------NVQLVSSLLQEYGYHLRGNEVLYNGFTGRKL--------------NAQVFLGP 1050
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P+ R R GG+ FGEM+ DC IAHGA+ L+E
Sbjct: 1051 TYYQRLKHMVDDKIHSRARGPVQILTRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLNE 1110
Query: 272 RL-KCKNVANV----------IQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFS 319
RL + + V I + + CR C + + + +PY KLL QEL S
Sbjct: 1111 RLFEASDAYRVHVCNLCGLIAIANLRNNTFECRSCKNKTQVSQIRIPYACKLLFQEL-MS 1169
Query: 320 MGITLKF 326
M I +
Sbjct: 1170 MSIAPRM 1176
>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
Length = 1165
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 129/295 (43%), Gaps = 60/295 (20%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 122
K E V +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 892 KAPEPAYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQKGVCGIIVQQE 947
Query: 123 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 157
T +++E GK G +G + Y T F G + E
Sbjct: 948 DLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFG---GSKLEE 1004
Query: 158 QHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQF 217
++ V + G SG ++ CL ++ IF +YQ+
Sbjct: 1005 MSRTLVDK-----GFSYSGKDMLYSGITGECL--------------QAYIFFGPIYYQKL 1045
Query: 218 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK- 276
HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL
Sbjct: 1046 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSS 1105
Query: 277 -----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
++ N + +C C S++ IIK +PY AKLL QEL SM I +
Sbjct: 1106 DAFEVDICNQCGLMGYNSWCTSCKSSEYIIKMTIPYAAKLLFQEL-LSMNIAPRL 1159
>gi|172383|gb|AAB59324.1| RNA polymerase III [Saccharomyces cerevisiae]
Length = 1149
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|349581364|dbj|GAA26522.1| K7_Ret1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1149
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|6324781|ref|NP_014850.1| Ret1p [Saccharomyces cerevisiae S288c]
gi|2507350|sp|P22276.2|RPC2_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
polymerase III subunit C2; AltName: Full=C128; AltName:
Full=DNA-directed RNA polymerase III 130 kDa polypeptide
gi|1420485|emb|CAA99422.1| RPC128 [Saccharomyces cerevisiae]
gi|151945297|gb|EDN63540.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|256269629|gb|EEU04911.1| Ret1p [Saccharomyces cerevisiae JAY291]
gi|259149688|emb|CAY86492.1| Ret1p [Saccharomyces cerevisiae EC1118]
gi|285815086|tpg|DAA10979.1| TPA: Ret1p [Saccharomyces cerevisiae S288c]
gi|392296534|gb|EIW07636.1| Ret1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1149
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|323302937|gb|EGA56741.1| Ret1p [Saccharomyces cerevisiae FostersB]
Length = 1149
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|365762885|gb|EHN04417.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1149
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
Length = 1222
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 145/342 (42%), Gaps = 78/342 (22%)
Query: 18 AEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVL 76
V DI + K+ P D F KI+S + K + D S + E G+V KV+
Sbjct: 902 TRVSGDDIIIGKTVPYD----FSKIKSSLAPL--EKTLKFKKDASTAARSFESGVVDKVM 955
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---------------- 120
+ ++D G + IR V +GDKF+S HGQKG++G L
Sbjct: 956 IGTSDLGTKLVKIRIRS----VRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTKDGIIPD 1011
Query: 121 ----------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 169
T LLE L K A G+ +PF T I+++ +S +
Sbjct: 1012 IIMNPHAIPSRMTIGHLLEGLLSKVSALGGMEGDGSPFCNITVEKISKKLESLNFEKNGW 1071
Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
RN E + + ++IF T+YQ+ HM +DK+ R
Sbjct: 1072 EIMRNG---------------ETGNN-------LNAMIFIGPTYYQRLKHMVDDKIHSRA 1109
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN------------ 277
G Q LT +PV R R GG+ FGEM+ DC+++HGAS L +RL ++
Sbjct: 1110 RGPVQILTRQPVEGRSRDGGLRFGEMERDCMMSHGASIFLKDRLMDQSDAFSIFLCDLCG 1169
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+AN +R+ CR C + + I +PY KLL QEL
Sbjct: 1170 LIAIANPKKRIFE---CRSCLNRNSISLVKIPYACKLLFQEL 1208
>gi|190407518|gb|EDV10785.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Saccharomyces
cerevisiae RM11-1a]
Length = 881
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 615 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 670
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 671 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQG 727
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 728 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 766
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 767 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 826
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 827 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 873
>gi|242392342|dbj|BAH80384.1| RNA polymerase subunit B' [Haloterrigena longa]
Length = 609
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 128/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + IF + FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRQGLEDAGFNSAGKETMYSGISGEKIDAEIFVGVIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICANCG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|66356606|ref|XP_625481.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
II]
gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
II]
Length = 1287
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 134/326 (41%), Gaps = 60/326 (18%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYAEIGADH----------------SIKLKHTERGLVLKV 75
+D + N G +Q DI++ K + I +K K + +V
Sbjct: 967 NDGVCNVG-VQVSEDDIIVNKMSPINTREYVGDPSQFDLSEYKPSPVKYKGPTSSYIDRV 1025
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGK 134
+L+ N DG V RQ+ LGDKFSS HGQKGV+G + Q E
Sbjct: 1026 ILTENADGNQIYKVITRQT----RRPELGDKFSSRHGQKGVVGLIISQEDLPFSET---- 1077
Query: 135 GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF------- 187
G C L+ F + + V +LL I ++ S + +++ F
Sbjct: 1078 GWCPDLIMNPHGFPS----------RMTVGKLLELISSKASVLDGNYRYGTAFGGTPLEE 1127
Query: 188 ---CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
CL E + L + + IF +YQ+ HM DK+ R G Q L
Sbjct: 1128 SAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRGPRQIL 1187
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPY 290
T +P R + GG+ GEM+ DCL+A+GAS L ERL NV N Y
Sbjct: 1188 TRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETNVCNQCGLFGYNNY 1247
Query: 291 CRICNSADDIIKANVPYGAKLLSQEL 316
C C S+ D+ +PY KLL QEL
Sbjct: 1248 CHYCKSSQDVSIIRLPYACKLLFQEL 1273
>gi|407464206|ref|YP_006775088.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
AR2]
gi|407047394|gb|AFS82146.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
AR2]
Length = 1115
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 143/326 (43%), Gaps = 54/326 (16%)
Query: 32 SDDMLNFGKIQSKSGDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVL 76
DD + + K GDI+IGK Y E + D SI ++ +E G++ V+
Sbjct: 788 EDDGVVASEAPVKGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVIDTVV 847
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGA 136
++ +++G + R + +GDKF+S HGQKGVLG L + A+ L +
Sbjct: 848 MTQSNEGGKMYKIRARD----MRIPEIGDKFASRHGQKGVLGILAK--AEDLPYTASGMS 901
Query: 137 CDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK-----------HYF 185
D L++ P A + + +S + G R G F+ + H F
Sbjct: 902 PDVLIN---PHAFPSRMTVGMMMESICGKAAALRGKRFDGSAFVGEKMPEVKEVMDAHGF 958
Query: 186 LFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRK 245
+ E D +F + +YQ+ HM DK+ R G Q LT +P R
Sbjct: 959 EYSGKETMYDGRTGKSFPVD-VFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRA 1017
Query: 246 RFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPY 290
R GG+ FGEM+ DCLIA+GAS L +RL +C VA +V QR
Sbjct: 1018 RGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---V 1074
Query: 291 CRICNSADDIIKANVPYGAKLLSQEL 316
CR+C + +V Y KLL QE+
Sbjct: 1075 CRVCGDKAKVSSVSVAYAFKLLLQEM 1100
>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
Length = 1174
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 159/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQ-------------------VKSRPSDDMLNF 38
MN +++E G FRS SYK + + + + DD +
Sbjct: 796 MNASAVERGFFRSVFFRSYKDQESKRSADQEETFEKPFRDHCQGMRNAIYDKLDDDGIIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+H+E G+V +V+L+ N +G
Sbjct: 856 PGLRVSGDDVVIGKTITLPENDDDLESTTKKFSKRDASTFLRHSETGIVDQVMLTLNAEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 NKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLQEYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGHTGRKL--------------NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C VAN+
Sbjct: 1071 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGIIAVANL 1130
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1131 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1171
>gi|451845872|gb|EMD59183.1| hypothetical protein COCSADRAFT_175739 [Cochliobolus sativus ND90Pr]
Length = 1215
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 136/317 (42%), Gaps = 66/317 (20%)
Query: 51 GKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 110
G + + D + K + + K ++ N+ G + +RQ+ LGDKFSS
Sbjct: 924 GPASNLYKDKPERYKLPDCSYIDKACITENESGTTLIKLLMRQT----RRPELGDKFSSR 979
Query: 111 HGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSY 143
HGQKG G + Q T +++E GK G +G + Y
Sbjct: 980 HGQKGTTGLIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEY 1039
Query: 144 ATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFIC 201
T F ST + + Q V + + G SGIT ++ F
Sbjct: 1040 GTAFGGST---VEDMSQILVEKGFSYTGKDYLTSGITGEAHQFYTF-------------- 1082
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
F I +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 1083 ------FGPI-YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLI 1135
Query: 262 AHGASGNLHERLKCKNVANVI-------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 314
A+GAS L ERL + A+ + Q G YC++C S I K +PY AKLL Q
Sbjct: 1136 AYGASQLLLERLMISSDAHNVDVCEKCGQMGYSG-YCKLCESEKAIRKITMPYAAKLLIQ 1194
Query: 315 EL-SFSMGITLKFDTQL 330
EL S ++ +T+ + +
Sbjct: 1195 ELGSMNVKVTIGLEDEF 1211
>gi|448303812|ref|ZP_21493758.1| DNA-directed RNA polymerase subunit B' [Natronorubrum
sulfidifaciens JCM 14089]
gi|242392394|dbj|BAH80410.1| RNA polymerase subunit B' [Natronorubrum sulfidifaciens JCM 14089]
gi|445592439|gb|ELY46626.1| DNA-directed RNA polymerase subunit B' [Natronorubrum
sulfidifaciens JCM 14089]
Length = 609
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 130/293 (44%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTQDGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESELREGLEDAGFNSAGKEVMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C+ DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|17647877|ref|NP_523706.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
gi|78099797|sp|P25167.2|RPC2_DROME RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
polymerase III subunit C2; AltName: Full=DNA-directed RNA
polymerase III 128 kDa polypeptide; Short=C128
gi|7303535|gb|AAF58590.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
gi|220943532|gb|ACL84309.1| RpIII128-PA [synthetic construct]
Length = 1137
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 150/342 (43%), Gaps = 70/342 (20%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V NK I + K P+ +N +Q +S + Y + I K E + +V++
Sbjct: 827 QVQNKQIMINKEMPAVTSMN--PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMV 877
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ-------------- 122
S+N + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 878 SANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDM 933
Query: 123 -----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
T + LE GK G +G Y T F GG E Q+ + +
Sbjct: 934 IMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQAELER----- 984
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G ++ K +F + P++ + I++ +YQ+ HM +DK+ R
Sbjct: 985 ----HGFNYVGKDFFYSGITGTPLE---------AYIYSGPVYYQKLKHMVQDKMHARAR 1031
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQR 284
G LT +P R R GG+ GEM+ DCLI++GAS + ERL +V R
Sbjct: 1032 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1091
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ ++ K ++PY KLL QEL+ SM + K
Sbjct: 1092 MAYCSWCHFCQSSANVSKISMPYACKLLFQELT-SMNVVPKM 1132
>gi|302927105|ref|XP_003054428.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735369|gb|EEU48715.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1156
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 132/305 (43%), Gaps = 56/305 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 871 DSSVSYRIADPAYIDKVMVSQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 926
Query: 119 FLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGVITEQH----QSFVSQLLNCIGA 172
+ + PF+ T +I H + V +LL C+
Sbjct: 927 II-------------------VDQEDLPFSDKGLTPDIIMNPHGFPSRMTVGKLLECLTG 967
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICL--------------------VRSLIFTWIT 212
+ S I + F P++ ++ + + + + IF
Sbjct: 968 KASIIHGRPDYGFGDAFRSHPLEEMSKVLVDHGFSWEGKDYFTSGVTGEPLEAYIFNGPI 1027
Query: 213 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 272
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ER
Sbjct: 1028 YYQRLKHMVQDKMHSRSRGPKAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQLLLER 1087
Query: 273 LKCKNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLK 325
L + I + G YC C S ++ K +PY AKLL QEL S ++G+ L+
Sbjct: 1088 LMISSDGTEIDICQQCGLFGYKGYCHTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQ 1147
Query: 326 FDTQL 330
+ +
Sbjct: 1148 MEDEF 1152
>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
Length = 1150
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>gi|45358925|ref|NP_988482.1| DNA-directed RNA polymerase subunit B' [Methanococcus maripaludis
S2]
gi|45047791|emb|CAF30918.1| Glycoside hydrolase, family 1:DNA-directed RNA polymerase, beta
subunit:ATP/GTP-binding site motif A (P-loop)
[Methanococcus maripaludis S2]
Length = 611
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 171/403 (42%), Gaps = 97/403 (24%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFGK----- 40
+N+ASLE G+ RS SY++ ++D ++ K R + N G
Sbjct: 225 INKASLERGLGRSSFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLID 284
Query: 41 IQS--KSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
++S KSGD+++GK + EI D S+ ++H E G+V V+LS +G
Sbjct: 285 LESSVKSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGIVDLVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + GDKF+S HGQKGV+G + P + L D +++
Sbjct: 345 NRLGKVRVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDLPYTEDGVIPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITF-----------IFKH 183
+A P + G Q+L IG R G F + K+
Sbjct: 399 HAIPSRMTIG------------QVLEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKY 446
Query: 184 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
F E D + L IF + +YQ+ H+ K+ R+ G Q LT +P
Sbjct: 447 GFEHHAKEAMYDGKSGRKL-ECDIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEG 505
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPY 290
R R GG+ FGEM+ D L+AHGA+ L ERL KC +A + G +
Sbjct: 506 RAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKF 564
Query: 291 CRICNSADD------IIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C ++D I + Y KLL EL SMGI K +
Sbjct: 565 CPVCGESEDIQDNRKIPPVKIAYAFKLLLDELK-SMGIDPKLE 606
>gi|327401233|ref|YP_004342072.1| DNA-directed RNA polymerase subunit B [Archaeoglobus veneficus
SNP6]
gi|327316741|gb|AEA47357.1| DNA-directed RNA polymerase subunit B [Archaeoglobus veneficus
SNP6]
Length = 604
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 145/326 (44%), Gaps = 46/326 (14%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYA---------EIG------ADHSIKLKHTERGLVLKVL 76
+D L F + + D++IGK + E+G + SI ++ E+G+V V
Sbjct: 277 DEDGLVFPETEVGPDDVLIGKTSPPRFLEEPTELGISPQKRRETSITMRSNEKGIVDAVF 336
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGA 136
L ++ G A V +R + LGDKF+S HGQKGV+G + P + +
Sbjct: 337 LMQSESGSKLAKVRVRD----LRIPELGDKFASRHGQKGVIGLI--VPEEDMPFTESGIV 390
Query: 137 CDGLMS-YATPFATSTGGV---ITEQHQSFVSQLLNCI---GARNSGITFIFKHY-FLFC 188
D +++ +A P + G V I + S + ++ G + + I K Y F
Sbjct: 391 PDMIVNPHAIPSRMTVGHVLEMIGGKVGSLEGRRIDATVFYGEKEKDLREILKAYGFSHT 450
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
E D I IF + +YQ+ HM K+ R+ G Q LT +P R R G
Sbjct: 451 GKEVMYDGITGKRFTVD-IFVGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKG 509
Query: 249 GIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANV-IQRVVGGPYCRIC 294
G+ FGEM+ D LI HGA+ L +RL C +VA +R + YC+IC
Sbjct: 510 GLRFGEMERDVLIGHGAALLLKDRLLEESDKVEVYVCGNCGHVATYDYRRNIA--YCKIC 567
Query: 295 NSADDIIKANVPYGAKLLSQELSFSM 320
+ +I + + Y KLL EL M
Sbjct: 568 DDDSNIHRVEMSYAFKLLLDELKSMM 593
>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
Length = 1158
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 144/325 (44%), Gaps = 66/325 (20%)
Query: 41 IQSKSGDIVIG------KYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQS 94
+ + +G+ V+G + AE + K E V +V++S D+ + V +RQ+
Sbjct: 855 VPTNAGESVLGSPDQHVQSAESHRETPAYYKGPEPSYVDQVMMSVGDNDQALIKVLLRQT 914
Query: 95 VNMVHSACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLL 128
LGDKFSS HGQKGV G + Q T ++L
Sbjct: 915 ----RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKML 970
Query: 129 EAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF 187
E GK G +G + Y T F GG E +S++L G SG ++
Sbjct: 971 ELISGKAGVLNGSLEYGTCF----GGSKLED----MSKILVDHGFNYSGKDMLYSGITGE 1022
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
C+ ++ IF +YQ+ HM DK+ R G LT +P R R
Sbjct: 1023 CM--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 1068
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDII 301
GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C C S D +I
Sbjct: 1069 GGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCSKCGLMGYNGWCTSCKSTDSVI 1128
Query: 302 KANVPYGAKLLSQELSFSMGITLKF 326
K +PY AKLL QEL SM I +
Sbjct: 1129 KMTIPYAAKLLFQEL-LSMNIAPRL 1152
>gi|334312104|ref|XP_003339712.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
[Monodelphis domestica]
Length = 1079
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 166/402 (41%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDI-VIGKYAEIGAD 59
+N+AS E G YK E+ D+ K + DD L FG K GD+ V+ K G
Sbjct: 703 VNKASWERGFAHGSVYKTEL--IDLSEKIKQGDDSLVFG---VKPGDLRVLQKLDSDGLP 757
Query: 60 HSIKL-----------------------KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 96
H L K+ E LV + + SND G N SI ++
Sbjct: 758 HIGSLLKYGDPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDSG-NGKFKSICITMR 816
Query: 97 MVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEA 130
+ + +GDKF+S HGQKG+L L E P L+E+
Sbjct: 817 IPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIES 876
Query: 131 ALGKGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGARNSGITFIFKHYFLF 187
GK A GL ATPF S E++ + + ++L G G ++
Sbjct: 877 MAGKSAALHGLCHDATPFTFS------EENSALGYFGEMLKAAGYNFYGTERLYSG---- 926
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R
Sbjct: 927 ---------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQ 976
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP-------- 289
GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 977 GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMR 1036
Query: 290 ----YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1037 NRKYNCTVCNQSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1077
>gi|195333588|ref|XP_002033472.1| GM21328 [Drosophila sechellia]
gi|195582601|ref|XP_002081115.1| GD10835 [Drosophila simulans]
gi|194125442|gb|EDW47485.1| GM21328 [Drosophila sechellia]
gi|194193124|gb|EDX06700.1| GD10835 [Drosophila simulans]
Length = 1137
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 150/342 (43%), Gaps = 70/342 (20%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V NK I + K P+ +N +Q +S + Y + I K E + +V++
Sbjct: 827 QVQNKQIMINKEMPAVTSMN--PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMV 877
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ-------------- 122
S+N + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 878 SANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDM 933
Query: 123 -----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
T + LE GK G +G Y T F GG E Q+ + +
Sbjct: 934 IMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQAELER----- 984
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G ++ K +F + P++ + I++ +YQ+ HM +DK+ R
Sbjct: 985 ----HGFNYVGKDFFYSGITGSPLE---------AYIYSGPVYYQKLKHMVQDKMHARAR 1031
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQR 284
G LT +P R R GG+ GEM+ DCLI++GAS + ERL +V R
Sbjct: 1032 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1091
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ ++ K ++PY KLL QEL+ SM + K
Sbjct: 1092 MAYCSWCHFCQSSANVSKISMPYACKLLFQELT-SMNVVPKM 1132
>gi|11499471|ref|NP_070712.1| DNA-directed RNA polymerase subunit B' [Archaeoglobus fulgidus DSM
4304]
gi|3122770|sp|O28392.1|RPOB1_ARCFU RecName: Full=DNA-directed RNA polymerase subunit B'
gi|2648657|gb|AAB89366.1| DNA-directed RNA polymerase, subunit B' (rpoB1) [Archaeoglobus
fulgidus DSM 4304]
Length = 604
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 161/382 (42%), Gaps = 74/382 (19%)
Query: 1 MNQASLECGVFRSESYKA----------------EVDNKDI------QVKSRPSDDMLNF 38
MN+ S+E G+ RS Y+ E+ DI + + +D L F
Sbjct: 224 MNKGSVERGLGRSFFYRTYESEEMRYPGGQEDKFEIPGADISGFRGAEAYAHLDEDGLIF 283
Query: 39 GKIQSKSGDIVIGKYA---------EIG------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + D++IG+ + E+G + S+ ++ E+G+V V L ++ G
Sbjct: 284 PETEVGPDDVLIGRTSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
A V +R + LGDKF+S HGQKGV+G L P + + D +++
Sbjct: 344 SKLAKVRVRD----LRIPELGDKFASRHGQKGVVGLL--VPEEDMPFTESGIVPDLIINP 397
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-----------IFKHYFLFCLFE 191
+A P + G V+ + ++ + G R G F + K+ F E
Sbjct: 398 HAIPSRMTVGHVL----EMIGGKVGSLEGRRVDGSLFHGESEEDLRATLKKYGFSHTGKE 453
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D I + IF + +YQ+ HM K+ R+ G Q LT +P R R GG+
Sbjct: 454 VMYDGITGRRYLVD-IFVGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLR 512
Query: 252 FGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSAD 298
FGEM+ D LI HGA+ L +RL C +VA R YC IC+
Sbjct: 513 FGEMERDVLIGHGAALLLKDRLLEESDKVEVWVCGNCGHVATYDYR-RNTAYCHICDDES 571
Query: 299 DIIKANVPYGAKLLSQELSFSM 320
+I K + Y KLL EL M
Sbjct: 572 NIHKVEMSYAFKLLLDELKSMM 593
>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.G.57.14]
gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.N.15.51]
gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
Length = 1131
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 161/401 (40%), Gaps = 102/401 (25%)
Query: 1 MNQASLECGVFRS--------ESYKAEVDNKDIQVKSRP--------------SDDMLNF 38
MN++S+E G++RS E K +D V P D+ +
Sbjct: 743 MNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVS 802
Query: 39 GKIQSKSGDIVIGK---------YAEIGA-----DHSIKLKHTERGLVLKVLLSSNDDGK 84
+++ K GD++IGK + E+ D SI +H E G+V VL++ +G
Sbjct: 803 PEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN 862
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R + +GDKF+S HGQKGV+G L
Sbjct: 863 KLVKVRVRD----LRVPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHAL 918
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T Q++E GK A G + ATPF +++ + QL N
Sbjct: 919 PSRMTLGQIMEGIAGKYAALSGNIVDATPF-----------YKTPIEQLQNE-------- 959
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
I K+ +L E D + ++S I+ + +YQ+ HM DK+ R G Q LT
Sbjct: 960 --ILKYGYLPDATEVTYDGRSG-QKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILT 1016
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRV 285
+P R R GG+ FGEM+ DCLI G + L +RL + I +
Sbjct: 1017 RQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKN 1076
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C I ++ V Y KLL QEL SM I+ +
Sbjct: 1077 KNKYICPIHGDKSNLFPVTVSYAFKLLIQEL-MSMIISPRL 1116
>gi|126303601|ref|XP_001373893.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
[Monodelphis domestica]
Length = 1135
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 166/402 (41%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDI-VIGKYAEIGAD 59
+N+AS E G YK E+ D+ K + DD L FG K GD+ V+ K G
Sbjct: 759 VNKASWERGFAHGSVYKTEL--IDLSEKIKQGDDSLVFG---VKPGDLRVLQKLDSDGLP 813
Query: 60 HSIKL-----------------------KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 96
H L K+ E LV + + SND G N SI ++
Sbjct: 814 HIGSLLKYGDPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDSG-NGKFKSICITMR 872
Query: 97 MVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEA 130
+ + +GDKF+S HGQKG+L L E P L+E+
Sbjct: 873 IPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIES 932
Query: 131 ALGKGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGARNSGITFIFKHYFLF 187
GK A GL ATPF S E++ + + ++L G G ++
Sbjct: 933 MAGKSAALHGLCHDATPFTFS------EENSALGYFGEMLKAAGYNFYGTERLYSG---- 982
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R
Sbjct: 983 ---------ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQ 1032
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------- 290
GGI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1033 GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMR 1092
Query: 291 -----CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1093 NRKYNCTVCNQSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|449016392|dbj|BAM79794.1| RNA polymerase II second largest subunit [Cyanidioschyzon merolae
strain 10D]
Length = 1184
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 170/417 (40%), Gaps = 121/417 (29%)
Query: 1 MNQASLECGVFRSESYKA--EVDNKDI----QVKSRP------------------SDDML 36
M+QA+++ G+FRS YK E + K + + S+P SD ++
Sbjct: 791 MSQAAVDRGLFRSVYYKTFKEEEQKKLFGQQETISKPDPAVTLGMKEAHAYSKLESDGLI 850
Query: 37 NFGKIQSKSGDIVIGKYAEIGA--------------------------DHSIKLKHTERG 70
G+ + + GD+++GK A +GA D S+ +K TERG
Sbjct: 851 GVGE-RVRGGDVLVGKTAPLGASRAAVDAAEQETASGMAALSGMRTRKDCSLVMKRTERG 909
Query: 71 LVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--- 124
+ KVL+ + + G V +R + +GDKF+S HGQKG +G E P
Sbjct: 910 VTDKVLICTGEAGTRMVKVRVRTEL----IPQVGDKFASRHGQKGTMGLCMPEEDLPFNV 965
Query: 125 --------------------AQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQSFV 163
A L+EA LGK A G+ AT F T I +
Sbjct: 966 DGIRPDIIMNPHAVPSRMTIAHLIEALLGKVCALSGVEGDATAFTPVTVDAIGRE----- 1020
Query: 164 SQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSED 223
L G G +F PM+ + IF + +YQ+ H+
Sbjct: 1021 ---LVRHGYDPRGWELLFNGQT-----GRPMN---------AAIFMGVNYYQRLRHVVYQ 1063
Query: 224 KVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------- 273
K+ R G+ Q LT +PV + R GG+ GEM+ D +A+GAS L ER+
Sbjct: 1064 KLGARARGAVQVLTRQPVEGKSRGGGLRIGEMEKDVFVAYGASAVLKERMCDVSDKYRVH 1123
Query: 274 ---KCKNVANV-IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+C +A ++R + CR C + I +PY KLL QEL SM I +
Sbjct: 1124 VCERCGLIAIADLRRSIF--ECRGCKNKTRIAAVEIPYACKLLFQEL-MSMAIAPRM 1177
>gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster]
Length = 1146
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 150/342 (43%), Gaps = 70/342 (20%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V NK I + K P+ +N +Q +S + Y + I K E + +V++
Sbjct: 836 QVQNKQIMINKEMPAVTSMN--PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMV 886
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ-------------- 122
S+N + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 887 SANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDM 942
Query: 123 -----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
T + LE GK G +G Y T F GG E Q+ + +
Sbjct: 943 IMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQAELER----- 993
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G ++ K +F + P++ + I++ +YQ+ HM +DK+ R
Sbjct: 994 ----HGFNYVGKDFFYSGITGTPLE---------AYIYSGPVYYQKLKHMVQDKMHARAR 1040
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQR 284
G LT +P R R GG+ GEM+ DCLI++GAS + ERL +V R
Sbjct: 1041 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1100
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ ++ K ++PY KLL QEL+ SM + K
Sbjct: 1101 MAYCSWCHFCQSSANVSKISMPYACKLLFQELT-SMNVVPKM 1141
>gi|430811324|emb|CCJ31247.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1167
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 127/297 (42%), Gaps = 64/297 (21%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 122
K E G + K++L++ D + +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 894 KSFEPGYIDKIMLTTTDSDQTLIKCLVRQT----RRPELGDKFSSRHGQKGVCGLIVQQE 949
Query: 123 ---------TP---------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITE 157
TP +++E GK G G + Y T F G I +
Sbjct: 950 DMPFDQNGITPDIIMNPHGFPSRMTVGKMIELLAGKAGVLSGTLQYGTAFG---GSKIDD 1006
Query: 158 QHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 215
Q + + G SGIT +++ IF +YQ
Sbjct: 1007 MSQILIENGYSYSGKDELTSGITG---------------------ESLQAYIFFGPIYYQ 1045
Query: 216 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC 275
+ HM DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL
Sbjct: 1046 KLKHMVLDKMHARARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLML 1105
Query: 276 KNVANVIQ-----RVVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ A + ++G +C C S D++K +PY AKLL QEL SM I K
Sbjct: 1106 SSDAFKVDICEACGLIGYKGWCNRCKSTKDVVKLTIPYAAKLLFQEL-ISMNIIPKL 1161
>gi|390960609|ref|YP_006424443.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
gi|390518917|gb|AFL94649.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
Length = 1122
Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats.
Identities = 97/330 (29%), Positives = 151/330 (45%), Gaps = 54/330 (16%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V KD+ V ++ P F + QS G I++ + E S+ ++ +ERG+V KV
Sbjct: 802 ESKVSGKDVLVGRTSPP----RFLEEQSGLGGIILQERRET----SVTVRPSERGIVDKV 853
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG ++ R + LGDKF+S HGQKGV+G + P + +
Sbjct: 854 IITETGDGTKLVKITTRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGI 907
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ G R G FI
Sbjct: 908 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEEL 963
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 964 GFKHSGREIMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1018
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV 286
P R R GG+ FGEM+ D LI HGA+ L ERL C ++A +R
Sbjct: 1019 PTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKR-R 1077
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQEL 316
G YC +C + I K + Y KLL EL
Sbjct: 1078 GKVYCPVCGEEERISKVEMSYAFKLLLDEL 1107
>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
Length = 1158
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 145/325 (44%), Gaps = 66/325 (20%)
Query: 41 IQSKSGDIVIG------KYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQS 94
+ + +G+ V+G + AE + K E + +V++S D+ + V +RQ+
Sbjct: 855 VPTNAGESVLGSPDQHVQSAESHRETPAYYKGPEPSYIDQVMMSVGDNDQALIKVLLRQT 914
Query: 95 VNMVHSACLGDKFSSMHGQKGVLGFLEQ-----------TP---------------AQLL 128
LGDKFSS HGQKGV G + Q TP ++L
Sbjct: 915 ----RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGITPDIIMNPHGFPSRMTVGKML 970
Query: 129 EAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF 187
E GK G +G + Y T F GG E +S++L G SG ++
Sbjct: 971 ELISGKAGVLNGSLEYGTCF----GGSKLED----MSKILVDHGFNYSGKDMLYSGITGE 1022
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
C+ ++ IF +YQ+ HM DK+ R G LT +P R R
Sbjct: 1023 CM--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 1068
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDII 301
GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C C S D +I
Sbjct: 1069 GGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCSKCGLMGYNGWCTSCKSTDSVI 1128
Query: 302 KANVPYGAKLLSQELSFSMGITLKF 326
K +PY AKLL QEL SM I +
Sbjct: 1129 KMTIPYAAKLLFQEL-LSMNIAPRL 1152
>gi|297619553|ref|YP_003707658.1| DNA-directed RNA polymerase subunit B [Methanococcus voltae A3]
gi|297378530|gb|ADI36685.1| DNA-directed RNA polymerase subunit B [Methanococcus voltae A3]
Length = 611
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 170/398 (42%), Gaps = 89/398 (22%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFG-----K 40
+N+AS+E G+ RS SY++ ++D ++ K R N G +
Sbjct: 225 INKASIERGLGRSSFFRSYESFEKRYPGGQLDRFEVPEKGVRGYRAEGAYRNLGGDGLIE 284
Query: 41 IQSK--SGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
++S+ SGD++IGK + EI D S+ ++H E G V V+LS +G
Sbjct: 285 LESEVSSGDVIIGKTSPPRFLEENEISLQQKSQRRDTSVTIRHGEEGTVDLVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
+ V +R S LGDKF+S HGQKGV+G + P + L D +++
Sbjct: 345 NRLSKVRVRDS----RIPELGDKFASRHGQKGVIGLV--VPQEDLPFTEDGVIPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FKHYFLF 187
+A P + G V+ S L+C R G F FKH
Sbjct: 399 HAVPSRMTIGQVLEMIGGKVGS--LDC--RRIDGTIFSGEGEWSLRDALEAHGFKHNGKE 454
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
++E C V F + +YQ+ H+ K+ R+ G Q LT +P R R
Sbjct: 455 TVYEG-KSGKKLECEV----FVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRARE 509
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRIC 294
GG+ FGEM+ D L+AHGA+ L ERL KC +A + G YC IC
Sbjct: 510 GGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIA-IYDFKRGIKYCPIC 568
Query: 295 NSADD------IIKANVPYGAKLLSQELSFSMGITLKF 326
+D I + Y KLL EL SMGI K
Sbjct: 569 GEVEDVQDNRKIPSVKIAYAFKLLLDELK-SMGIDPKL 605
>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
Length = 1131
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 161/401 (40%), Gaps = 102/401 (25%)
Query: 1 MNQASLECGVFRS--------ESYKAEVDNKDIQVKSRP--------------SDDMLNF 38
MN++S+E G++RS E K +D V P D+ +
Sbjct: 743 MNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVS 802
Query: 39 GKIQSKSGDIVIGK---------YAEIGA-----DHSIKLKHTERGLVLKVLLSSNDDGK 84
+++ K GD++IGK + E+ D SI +H E G+V VL++ +G
Sbjct: 803 PEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN 862
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R + +GDKF+S HGQKGV+G L
Sbjct: 863 KLVKVRVRD----LRVPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHAL 918
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T Q++E GK A G + ATPF +++ + QL N
Sbjct: 919 PSRMTLGQIMEGIAGKYAALSGNIVDATPF-----------YKTPIEQLQNE-------- 959
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
I K+ +L E D + ++S I+ + +YQ+ HM DK+ R G Q LT
Sbjct: 960 --ILKYGYLPDATEVTYDGRSG-QKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILT 1016
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRV 285
+P R R GG+ FGEM+ DCLI G + L +RL + I +
Sbjct: 1017 RQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKN 1076
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C I ++ V Y KLL QEL SM I+ +
Sbjct: 1077 KNKYICPIHGDKSNLFPVTVSYAFKLLIQEL-MSMIISPRL 1116
>gi|161527855|ref|YP_001581681.1| DNA-directed RNA polymerase subunit B [Nitrosopumilus maritimus SCM1]
gi|160339156|gb|ABX12243.1| RNA polymerase Rpb2 domain 6 [Nitrosopumilus maritimus SCM1]
Length = 1115
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 139/314 (44%), Gaps = 54/314 (17%)
Query: 44 KSGDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GDI+IGK Y E + D SI ++ +E G+V V+++ +++G
Sbjct: 800 KGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYK 859
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFA 148
+ R + +GDKF+S HGQKGVLG L + A+ L + D L++ P A
Sbjct: 860 IRARD----MRIPEIGDKFASRHGQKGVLGILAK--AEDLPYTASGMSPDVLIN---PHA 910
Query: 149 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK-----------HYFLFCLFECPMDWI 197
+ + +S + G R G F+ + H F + E D
Sbjct: 911 FPSRMTVGMMMESICGKSAALRGKRFDGSAFVGEKMDEVREVMDAHGFEYSGKEIMYDGR 970
Query: 198 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 257
+F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+
Sbjct: 971 TGKSFPVE-VFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMER 1029
Query: 258 DCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIK 302
DCLIA+GAS L +RL +C VA +V QR CR+C +
Sbjct: 1030 DCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSS 1086
Query: 303 ANVPYGAKLLSQEL 316
+V Y KLL QE+
Sbjct: 1087 VSVAYAFKLLLQEM 1100
>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
Length = 1142
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 139/319 (43%), Gaps = 60/319 (18%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 100
I + SGD V+ + + + E + +V++S +D+ + V +RQ+
Sbjct: 843 IPTNSGDGVLTNTQSQYKETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RR 898
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
LGDKFSS HGQKGV G + E P +++E GK
Sbjct: 899 PELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELISGK 958
Query: 135 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
G +G + Y T F GG E ++++L G SG ++ CL
Sbjct: 959 AGVLNGTLEYGTCF----GGSKLED----MTKILVDNGFNYSGKDMLYSGITGECL---- 1006
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
++ IF +YQ+ HM DK+ R G LT +P R R GG+ G
Sbjct: 1007 ----------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1056
Query: 254 EMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPY 307
EM+ DC+IA+GAS L ERL +V N + +C C SA++I K +PY
Sbjct: 1057 EMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYSGWCTTCRSAENINKMTIPY 1116
Query: 308 GAKLLSQELSFSMGITLKF 326
AKLL QEL SM I +
Sbjct: 1117 AAKLLFQEL-LSMNIAPRL 1134
>gi|451995160|gb|EMD87629.1| hypothetical protein COCHEDRAFT_1206799 [Cochliobolus heterostrophus
C5]
Length = 1215
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 136/317 (42%), Gaps = 66/317 (20%)
Query: 51 GKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 110
G + + D + K + + K ++ N+ G + +RQ+ LGDKFSS
Sbjct: 924 GPASNLYKDKPERYKLPDCSYIDKACITENESGTTLIKLLMRQT----RRPELGDKFSSR 979
Query: 111 HGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSY 143
HGQKG G + Q T +++E GK G +G + Y
Sbjct: 980 HGQKGTTGLIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEY 1039
Query: 144 ATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFIC 201
T F ST + + Q V + + G SGIT ++ F
Sbjct: 1040 GTAFGGST---VEDMSQILVEKGFSYTGKDYLTSGITGEAHQFYTF-------------- 1082
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
F I +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 1083 ------FGPI-YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLI 1135
Query: 262 AHGASGNLHERLKCKNVANVI-------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 314
A+GAS L ERL + A+ + Q G YC++C S + K +PY AKLL Q
Sbjct: 1136 AYGASQLLLERLMISSDAHNVDVCEKCGQMGYSG-YCKLCESEKAVRKITMPYAAKLLIQ 1194
Query: 315 EL-SFSMGITLKFDTQL 330
EL S ++ +T+ + +
Sbjct: 1195 ELGSMNVKVTIGLEDEF 1211
>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
Length = 1175
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS Y++ D + +V +P+ DD +
Sbjct: 797 MNASAVERGFFRSVFYRSYKDQESKRVGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+++ N +G
Sbjct: 857 PGVRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISSLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+F + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMFNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|291244544|ref|XP_002742157.1| PREDICTED: RNA polymerase I polypeptide B-like [Saccoglossus
kowalevskii]
Length = 1133
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 143/336 (42%), Gaps = 73/336 (21%)
Query: 44 KSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 102
+ GD + G E +++ KH ER +V V L ND G + S+ + +
Sbjct: 815 EPGDPLCGYINVETNVANTLSFKHHERAVVDNVKLCGNDLG-TAECQKVYISLRIQRNPT 873
Query: 103 LGDKFSSMHGQKGV---LGFLEQTP-----------------------AQLLEAALGK-G 135
+GDKFSS HGQKGV L +E P ++E+ GK G
Sbjct: 874 IGDKFSSRHGQKGVCSQLWPVENMPFSESGMTPDIIFNPHGFPSRMTIGMMIESMAGKSG 933
Query: 136 ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 195
+ GL ATPF S + + ++L G G ++ +D
Sbjct: 934 SLHGLSHDATPFTFSEDRPAID----YFGRMLREAGYNYYGNERMYSG----------VD 979
Query: 196 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 255
+ + IF I +YQ+ HM EDK + R TG LT +PV RKR GGI FGEM
Sbjct: 980 GRE----LEADIFVGIVYYQRLRHMVEDKFQVRTTGPIDILTHQPVKGRKRAGGIRFGEM 1035
Query: 256 KCDCLIAHGASGNLHERL-------------KCKNVANVIQR------------VVGGPY 290
+ D L++HG S L +RL KC + +IQ+ G Y
Sbjct: 1036 ERDALLSHGTSFLLQDRLFHCSDSSTTQLCTKCGSFQGIIQQKKSALLEGSSVNSSGHWY 1095
Query: 291 CRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLK 325
C++C SA+ I VPY + L EL + S+ TL+
Sbjct: 1096 CQMCKSAEHIQLLAVPYVFRYLLAELAAMSIKTTLQ 1131
>gi|412990492|emb|CCO19810.1| RNA Polymerase subunit 2 [Bathycoccus prasinos]
Length = 1149
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 162/388 (41%), Gaps = 90/388 (23%)
Query: 1 MNQASLECGVFRSESYKAE----VDNKDIQVKSRPSDDMLNFGKIQS--------KSGDI 48
MN+ S+E G+ + YK E D D S P LN K + + GD
Sbjct: 782 MNKFSMERGLAHATLYKTEGLTLKDKNDTFTVSGP----LNQTKFDASPLPGSILQKGDS 837
Query: 49 VIGKYAEI-GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 107
I I G LK ++G+V +V +S++ + ++ + + N + +GDKF
Sbjct: 838 FISVSNRISGKLKKTMLKGEDKGIVDRVKISASQEQSSYEKLDVTLRFN--RNPIIGDKF 895
Query: 108 SSMHGQKGVLGFL---------------------------EQTPAQLLEAALGK-GACDG 139
SS HGQKGVL +L T L+E+ K GA G
Sbjct: 896 SSRHGQKGVLSYLWPEEDLPFIERNGIKPDIIINPHAFPSRMTIGMLMESLASKEGALSG 955
Query: 140 LMSYATPFATSTGGVITEQHQSFV----SQLLNCIGARNSGITFIFKHYFLFCLFECPMD 195
A+PF + E+H + + L +G + +G T + F C FE
Sbjct: 956 NFVDASPFK-----ALKEEHLTIPLNNHYERLKDMGYKFTG-TETMINGFTGCTFEVD-- 1007
Query: 196 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 255
IF + +YQ+ HM DK + R+ G PLT +P+ RK GGI FGEM
Sbjct: 1008 -----------IFIGLVYYQRLRHMVSDKFQVRSEGPNNPLTKQPIKGRKMGGGIRFGEM 1056
Query: 256 KCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV------GGPYCRICNS 296
+ D L++HG + + +RL C ++ + +Q+V C C S
Sbjct: 1057 ERDSLLSHGVANLIQDRLLASSDKHSFKICSSCGSMISHLQKVALRNEECSNDICITCRS 1116
Query: 297 ADDIIKANVPYGAKLLSQELSFSMGITL 324
+I+ +VPY K L EL+ +M I L
Sbjct: 1117 TSNIVNVHVPYVYKYLISELA-AMNIRL 1143
>gi|429851912|gb|ELA27071.1| DNA-directed RNA polymerase iii 130 kda polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 1451
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 134/304 (44%), Gaps = 62/304 (20%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 866 DSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQT----RRPELGDKFSSRHGQKGVVG 921
Query: 119 FL--------------------------EQTPAQLLEAALGKGAC-DGLMSYATPFATST 151
+ T +LLE GK + DG Y F
Sbjct: 922 IIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRKDYG--FG--- 976
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
+F S L + A + G ++ K YF + P++ + IF
Sbjct: 977 --------DAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLE---------AYIFN 1019
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
+YQ+ HM +DK+ R+ G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1020 GPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLL 1079
Query: 270 HERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGI 322
ERL + ++ Q+ + G YC C S ++ + +PY AKLL QEL S ++G+
Sbjct: 1080 LERLMISSDGTQLDICQQCGLFGYKGYCHTCKSTREVTQMTMPYAAKLLVQELISMNVGV 1139
Query: 323 TLKF 326
L+
Sbjct: 1140 RLQL 1143
>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
Length = 1175
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS Y++ D + +V +P+ DD +
Sbjct: 797 MNASAVERGFFRSVFYRSYKDQESKRVGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+++ N +G
Sbjct: 857 PGVRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISSLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
Length = 1194
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 167/408 (40%), Gaps = 114/408 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRPSD------DMLNFGKIQSKS--- 45
MNQ++++ G+FRS Y+ D + ++V ++P LN+ K+
Sbjct: 807 MNQSAIDRGLFRSFLYRTYTDQETMNGPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVN 866
Query: 46 -------GDIVIGKY--------AEIGA---------------------DHSIKLKHTER 69
D++IGK A+ GA D S ++ TE
Sbjct: 867 PGARVTGEDVLIGKILPVIERTGADGGALIDNKDGKINTESNATNVSWKDASTAMRPTEE 926
Query: 70 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-- 124
G+V V+++ N +G F V IR +GDKF+S HGQKG +G E P
Sbjct: 927 GVVDSVIVT-NREGYKFTKVKIRS----CRVPEMGDKFASRHGQKGTIGITLRAEDMPFT 981
Query: 125 ---------------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSF 162
L+E LGK A G TPF+ T I+EQ + F
Sbjct: 982 SEGIIPDIIINPHCIPSRMTIGHLIECLLGKVSALAGEEGDGTPFSDVTVEAISEQLKDF 1041
Query: 163 VSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 222
G + G+ ++ L + IF T+YQ+ HM +
Sbjct: 1042 --------GYEHRGLETMYNGMTGRKL--------------DAQIFIGPTYYQRLKHMVQ 1079
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANV 281
DKV R G Q LT +P R R GG+ FGEM+ DC+I+HG S L ERL + + ++
Sbjct: 1080 DKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDCIISHGTSLFLRERLFEVSDFFSL 1139
Query: 282 IQRVVGGPY-----CRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
I G + C+ C + + +PY KLL QEL MG+ +
Sbjct: 1140 IVCEQCGLFCLEDGCKGCGNKTKLAIVEMPYAFKLLLQEL---MGMNI 1184
>gi|40643998|emb|CAD91516.1| RNA polymerase II second largest subunit [Garrya elliptica]
Length = 576
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 130/320 (40%), Gaps = 88/320 (27%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 283 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAP 342
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HS L+H+E G+V +VLL++N DG
Sbjct: 343 PGTRVSGEDVIIGKTTPIAQDDSQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLR 402
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 403 FVKVRVRS----VRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTLEGITPDIIVNPHAIP 458
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T +S+ L+ G + G
Sbjct: 459 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFE 510
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 511 TMYNGHTGRRL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 556
Query: 239 RPVADRKRFGGIEFGEMKCD 258
+P R R GG+ FGEM+ D
Sbjct: 557 QPAEGRSRDGGLRFGEMERD 576
>gi|448320529|ref|ZP_21510015.1| DNA-directed RNA polymerase subunit B' [Natronococcus amylolyticus
DSM 10524]
gi|242392380|dbj|BAH80403.1| RNA polymerase subunit B' [Natronococcus amylolyticus]
gi|445605431|gb|ELY59353.1| DNA-directed RNA polymerase subunit B' [Natronococcus amylolyticus
DSM 10524]
Length = 609
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 128/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELREGLEQNGFDSAGKETMYSGISGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|167044136|gb|ABZ08819.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 1114
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 148/343 (43%), Gaps = 86/343 (25%)
Query: 32 SDDMLNFGKIQSKSGDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVL 76
DD + + + GDI+IGK Y E+ D SI ++ +E G+V ++
Sbjct: 787 EDDGIVASESRVSGGDILIGKTSPPRFMEEYHELEGSGPYRRDTSIGVRPSETGVVDTII 846
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-------------- 122
L+ + +G V IR + +GDKF+S HGQKGV+G L +
Sbjct: 847 LTQSAEGGKMFKVRIRD----MRLPEIGDKFASRHGQKGVVGLLAKAEDLPYTADGISPD 902
Query: 123 ------------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNC 169
T +LE+ GK A G A+ F G + E V +L
Sbjct: 903 VLINPHAFPSRMTVGMMLESITGKAAAMRGRKVDASAF---VGEKVDE-----VKSVLED 954
Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
G + SG ++ + P++ +F + +YQ+ HM DK+ R
Sbjct: 955 AGFKYSGKEIMYDGR---TGKQFPVE-----------VFIGVVYYQKLHHMVADKIHARA 1000
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCK 276
G Q LT +P R R GG+ FGEM+ DC+IA+GAS L +RL +C
Sbjct: 1001 RGQVQMLTKQPTEGRARGGGLRFGEMERDCIIAYGASMILKDRLLDESDKSDIFVCERCG 1060
Query: 277 NVA--NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELS 317
VA ++ QR YCR+C+ + +V Y KLL QE+S
Sbjct: 1061 LVAYHDIKQRRF---YCRVCDKKGKVSSVSVAYAFKLLLQEMS 1100
>gi|3746600|gb|AAC64015.1| RNA polymerase II subunit 2 [Mostuea brunonis]
Length = 255
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG F + ++ V +G+KF+S GQKG +G
Sbjct: 16 DHSTSLRHSETGVVDQVLLTTNADGLKFVKIRMKS----VRIPQIGNKFTSRPGQKGTIG 71
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 72 MTYTPEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 131
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L+ +IF
Sbjct: 132 --------VDNISKALHKCGYQMRGFERMYNGHTGR--------------LMGDVIFLGP 169
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 170 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 229
Query: 272 RL 273
RL
Sbjct: 230 RL 231
>gi|257386582|ref|YP_003176355.1| DNA-directed RNA polymerase subunit B' [Halomicrobium mukohataei
DSM 12286]
gi|242392248|dbj|BAH80361.1| RNA polymerase subunit B' [Halomicrobium mukohataei DSM 12286]
gi|257168889|gb|ACV46648.1| RNA polymerase Rpb2 domain 6 [Halomicrobium mukohataei DSM 12286]
Length = 608
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 128/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 380
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q EA + L +A P + G V+ + ++ G R G F
Sbjct: 381 APQEDMPFTEAGVVPDLI--LNPHALPSRMTVGHVL----EMLGGKVGALEGRRVDGTAF 434
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ F+ + + + V + IF FYQ+ HM +K+ R+
Sbjct: 435 TGEDEAELRGALEDRGFKSSGKEVMYSGVTGEKVEAEIFVGTIFYQKLYHMVSNKLHARS 494
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ G M+ D LI HGA+ L ERL +C
Sbjct: 495 RGPVQVLTRQPTEGRAREGGLRVGHMERDVLIGHGAAMVLKERLLDESDREWIKICGECG 554
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C DI + +PY KLL E+ ++GI + + +
Sbjct: 555 MTAVENVEQRRI---YCPNCEEETDIHEVEMPYAFKLLLDEMK-ALGIAPRIELE 605
>gi|4867817|emb|CAB43066.1| RNA polymerase II [Gardneria angustifolia]
Length = 261
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG + ++ V V +GDKFSS HGQKG +G
Sbjct: 21 DHSTSLRHSENGMVDQVLLTTNADG----LRFVKVRVRSVRVPQIGDKFSSRHGQKGTVG 76
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 77 MTYTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 136
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 137 --------VDNISRALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 174
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 175 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 234
Query: 272 RL 273
RL
Sbjct: 235 RL 236
>gi|407461849|ref|YP_006773166.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045471|gb|AFS80224.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
koreensis AR1]
Length = 1115
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 139/314 (44%), Gaps = 54/314 (17%)
Query: 44 KSGDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GDI+IGK Y E + D SI ++ +E G+V V+++ +++G
Sbjct: 800 KGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYK 859
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFA 148
+ R + +GDKF+S HGQKG+LG L + A+ L + D L++ P A
Sbjct: 860 IRARD----MRIPEIGDKFASRHGQKGILGILAK--AEDLPYTASGMSPDVLIN---PHA 910
Query: 149 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK-----------HYFLFCLFECPMDWI 197
+ + +S + G R G F+ + H F + E D
Sbjct: 911 FPSRMTVGMMMESICGKSAALRGKRFDGSAFVGEKMDEVREVMDAHGFEYSGKEIMYDGR 970
Query: 198 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 257
+F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+
Sbjct: 971 TGKSFPVE-VFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMER 1029
Query: 258 DCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIK 302
DCLIA+GAS L +RL +C VA +V QR CR+C +
Sbjct: 1030 DCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSS 1086
Query: 303 ANVPYGAKLLSQEL 316
+V Y KLL QE+
Sbjct: 1087 VSVAYAFKLLLQEM 1100
>gi|4867819|emb|CAB43068.1| RNA polymerase II [Gardenia thunbergia]
Length = 269
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG + ++ V V +GDKFSS HGQKG +G
Sbjct: 23 DHSTSLRHSETGIVDQVLLTTNADG----LRFVKVRVRSVRVPQIGDKFSSRHGQKGTVG 78
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P QL+E +GK A G ATPF T
Sbjct: 79 MTYTQEDMPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 138
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+S+ L+ G + G ++ + L + IF
Sbjct: 139 --------VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGP 176
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 177 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 236
Query: 272 RL 273
RL
Sbjct: 237 RL 238
>gi|396477501|ref|XP_003840283.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
maculans JN3]
gi|312216855|emb|CBX96804.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
maculans JN3]
Length = 1257
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 133/317 (41%), Gaps = 66/317 (20%)
Query: 51 GKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 110
G + I D K K + V K ++ N+ G + +RQ+ LGDKFSS
Sbjct: 966 GPASNIYKDKPEKYKMPDCSYVDKACITENEAGTTLIKLLMRQT----RRPELGDKFSSR 1021
Query: 111 HGQKGVLGFLEQ--------------------------TPAQLLEAALGK-GACDGLMSY 143
HGQKG G + Q T +++E GK G G + Y
Sbjct: 1022 HGQKGTTGLIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKAGVLRGTLEY 1081
Query: 144 ATPFATSTGGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFIC 201
T F G + + Q V + G SGIT ++ F
Sbjct: 1082 GTAFG---GSRVEDMSQVLVENGFSYTGKDYLTSGITGEAHQFYTF-------------- 1124
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
F I +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI
Sbjct: 1125 ------FGPI-YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLI 1177
Query: 262 AHGASGNLHERLKCKNVANVI-------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 314
A+GAS L ERL + A+ + Q G YC++C S I + +PY AKLL Q
Sbjct: 1178 AYGASQLLLERLMISSDAHDVDVCEKCGQMGYSG-YCKLCESEKAIRRITMPYAAKLLIQ 1236
Query: 315 EL-SFSMGITLKFDTQL 330
EL S ++ +T+ + +
Sbjct: 1237 ELGSMNVKVTIGLEDEF 1253
>gi|10963|emb|CAA41631.1| DNA-directed RNA polymerase [Drosophila melanogaster]
Length = 1135
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 149/342 (43%), Gaps = 71/342 (20%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V NK I + K P+ +N +Q +S + Y + I K E + +V++
Sbjct: 826 QVQNKQIMINKEMPAVTSMN--PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMV 876
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ-------------- 122
S+N + + +RQ+ GDKFSS HGQKGV G + EQ
Sbjct: 877 SANAEEDFLIKILLRQT-----RIPRGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDM 931
Query: 123 -----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
T + LE GK G +G Y T F GG E Q+ + +
Sbjct: 932 IMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQAELER----- 982
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G ++ K +F + P++ + I++ +YQ+ HM +DK+ R
Sbjct: 983 ----HGFNYVGKDFFYSGITGTPLE---------AYIYSGPVYYQKLKHMVQDKMHARAR 1029
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQR 284
G LT +P R R GG+ GEM+ DCLI++GAS + ERL +V R
Sbjct: 1030 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1089
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ ++ K ++PY KLL QEL+ SM + K
Sbjct: 1090 MAYCSWCHFCQSSANVSKISMPYACKLLFQELT-SMNVVPKM 1130
>gi|358060336|dbj|GAA93741.1| hypothetical protein E5Q_00387 [Mixia osmundae IAM 14324]
Length = 1152
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 158/393 (40%), Gaps = 94/393 (23%)
Query: 1 MNQASLE-----CGVFRSES--YKAEVDNKDIQVKSRPSDDMLNFGKIQS---------- 43
+N+AS++ C VFR S K +N ++ P D K +
Sbjct: 781 LNRASVDRGFGRCQVFRKYSTYIKQYPNNTHDRLADPPPPDSDRHRKYKVDADGLPAVGD 840
Query: 44 --KSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDGKNF 86
K GDI + K A D + + G + KV+LS ++G
Sbjct: 841 RVKEGDIYVNKQTPSNATDNSSTASSMPSHWRDAVMTYRANMNGHIDKVMLSDMENGTQL 900
Query: 87 AVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------- 124
+ +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 901 VKILMRQT----RRPELGDKFSSRHGQKGVCGLIVPQEDMPFTDQGICPDIIMNPHGFPS 956
Query: 125 ----AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
++LE GK G G Y T F GG E + Q +G ++
Sbjct: 957 RMTVGKMLELLSGKAGILGGKFEYGTAF----GGSKAEDMSRALIQ---------AGYSY 1003
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
K Y + ++ S +F FYQ+ HM DK+ R+ G LT +
Sbjct: 1004 AGKDYLTSGITGQALE---------SYVFFGPIFYQKLKHMVIDKMHARSRGPRATLTRQ 1054
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRI 293
P R R GG+ GEM+ DCLIAHGAS L ERL + A +V Q +G +C
Sbjct: 1055 PTEGRSRDGGLRLGEMERDCLIAHGASHLLLERLMLSSDAFEVDVCQSCGFMGYNGWCAH 1114
Query: 294 CNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C S D ++K +PY +KLL QEL +M I +
Sbjct: 1115 CKSGDKVVKLMLPYASKLLFQEL-LAMNIAPRL 1146
>gi|242392390|dbj|BAH80408.1| RNA polymerase subunit B' [Natronorubrum aibiense]
Length = 609
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 130/293 (44%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTQDGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESELRGGLEDAGFNSAGKEVMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C+ DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|8489819|gb|AAF75766.1|AF265351_1 DNA-directed RNA polymerase II polypeptide B [Sus scrofa]
Length = 381
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 3 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 62
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 63 PGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 122
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 123 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 178
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 179 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 231
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 232 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRTRGPIQIL 277
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 278 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQAHVCNLCGIMAIANT 337
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 338 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 378
>gi|358378199|gb|EHK15881.1| hypothetical protein TRIVIDRAFT_206553 [Trichoderma virens Gv29-8]
Length = 1157
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 139/310 (44%), Gaps = 58/310 (18%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D ++ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 872 DTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 927
Query: 119 FL---EQTP-----------------------AQLLEAALGKGA-CDGLMSYATPFATST 151
+ E P +LLE GK + G Y F +
Sbjct: 928 IIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRKEYG--FGDAF 985
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
EQ VS++L + G ++ K YF + P++ + IF
Sbjct: 986 RSHPVEQ----VSKVLV-----DHGFSWEGKDYFTSGITGEPLE---------AYIFNGP 1027
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1028 IYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLE 1087
Query: 272 RLKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITL 324
RL + + ++ Q+ + G YC C S ++ K +PY AKLL QEL S ++G+ L
Sbjct: 1088 RLMLSSDGVMIDICQQCGLFGYRGYCGTCKSTREVTKMQMPYAAKLLVQELISMNVGVRL 1147
Query: 325 KFDTQLSGVS 334
+ + + S
Sbjct: 1148 QLEDEFPHPS 1157
>gi|303388613|ref|XP_003072540.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
ATCC 50506]
gi|303301681|gb|ADM11180.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
ATCC 50506]
Length = 1047
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 159/370 (42%), Gaps = 73/370 (19%)
Query: 1 MNQASLECGVFRSESYKAE--VDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEI-G 57
+N++S+E G+F YK E V NK PS KIQ D ++ KY ++
Sbjct: 707 INKSSIERGLFTGLIYKTERIVLNKGYSFLYLPSVG----EKIQK---DSILYKYVDLED 759
Query: 58 ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV- 116
++ + TE G++ V + +D G+ A+++IR MV + +GDKFSS HGQKGV
Sbjct: 760 REYQTRYLETEDGVIDSVRVFESDAGERCALLTIR----MVRNPTIGDKFSSRHGQKGVC 815
Query: 117 --------LGFLEQ-----------------TPAQLLEAALGKGAC-DGLMSYATPFATS 150
+ F E T L+E+ GK C G T F +
Sbjct: 816 SVHWPSIDMPFTESGYVPDIIINPHAFPSRMTIGMLMESIAGKVGCLSGNTQDGTAFEKN 875
Query: 151 TGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 210
E+ +G + + + K+ F + E PM R +F
Sbjct: 876 LSQGEDEE----------TVGRKEYICSELQKYGFNYYGNE-PMYSGVSGNEFRVDVFVG 924
Query: 211 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 270
+ +YQ+ HM DK + R G+ T +PV RKR GGI FGEM+ D LI+HGAS L
Sbjct: 925 VVYYQRLKHMVGDKFQVRTKGAIVSTTRQPVGGRKRQGGIRFGEMERDTLISHGASHLLQ 984
Query: 271 ER-LKCKNVANVIQRVVGGPYCRICNS------------ADDIIKANVPYGAKLLSQELS 317
+R LKC + YC C S + DI +PY K L EL
Sbjct: 985 DRLLKCSDGTTF-------EYCGACKSILFTSSGDCICGSSDIRIVEMPYVFKYLCYEL- 1036
Query: 318 FSMGITLKFD 327
+M I +K D
Sbjct: 1037 LAMNIRVKLD 1046
>gi|298712018|emb|CBJ32957.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 451
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 147/353 (41%), Gaps = 60/353 (16%)
Query: 12 RSESYKAEVDNKDIQVKSR--PSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTER 69
R YKA ++ +V +R P M+N S SG G + A + K
Sbjct: 122 RWPRYKALDEDGICRVGARLDPGTIMVNKHSPASTSGS---GPVSSDFASTPLSYKAPAE 178
Query: 70 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-- 124
V KV+L++N++ + +RQ+ +GDKFSS HGQKGV G + E P
Sbjct: 179 SYVDKVVLTANENEDYLIKILLRQT----RRPEVGDKFSSRHGQKGVCGIIVPQEDMPFA 234
Query: 125 ---------------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSF 162
+++E GK G G +Y T F E+H S
Sbjct: 235 DSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFG--------EEHGSA 286
Query: 163 VSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 222
L C G +++ K P+ + IF FYQ+ HM
Sbjct: 287 DRVHLCCQALVERGYSYVGKDMLTSGTGGEPL---------MNYIFAGPVFYQKLKHMVM 337
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---VA 279
DK+ R G LT +P R R GG+ GEM+ DCLI +GAS + ERL + A
Sbjct: 338 DKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTA 397
Query: 280 NVIQ--RVVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
NV Q ++G +C+ C S + + +PY KLL QEL SM I + Q
Sbjct: 398 NVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQ-SMNIVPRLKLQ 449
>gi|305663643|ref|YP_003859931.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
17230]
gi|304378212|gb|ADM28051.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
17230]
Length = 1150
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 142/332 (42%), Gaps = 63/332 (18%)
Query: 40 KIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDGK 84
++Q K G+ +IGK A+ D S+ ++H E G V V ++S+ +G
Sbjct: 826 EVQVKGGEALIGKTSPPRFVEEYKGYGILAQRRKDSSVTVRHGEIGWVDAVFITSSLEGH 885
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYA 144
V +R + +GDKF+S HGQKGV+G L P + D +++
Sbjct: 886 RLIKVRVRD----LRIPEIGDKFASRHGQKGVIGAL--IPQYDMPYTPDGITPDLIIN-- 937
Query: 145 TPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIA 198
P A + + + +S ++ G G F K L +F PMD
Sbjct: 938 -PHALPSRMTLGQLMESIAGKVAALRGKNVDGTPFFEENIDELKRQLL--MFGYPMDGTE 994
Query: 199 FIC------LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
+ L+ + IF I +YQ+ HM DK+ R+ G Q LT +P R R GG+ F
Sbjct: 995 PMYDGRTGELIGNPIFIGIVYYQKLHHMVSDKMHARSKGPVQLLTRQPTEGRAREGGLRF 1054
Query: 253 GEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRIC------NSADDIIKAN-- 304
GEM+ D +I HGA+ L ER+ + ++ C +C N +I +
Sbjct: 1055 GEMERDAIIGHGAAALLRERMVESSDKTIVY------VCELCGFIGWYNRKKEIYECPIH 1108
Query: 305 ----------VPYGAKLLSQELSFSMGITLKF 326
+PY KLL QEL SMGI +
Sbjct: 1109 GDKGVLHPIVIPYAFKLLLQEL-MSMGIKPRL 1139
>gi|348558603|ref|XP_003465107.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
[Cavia porcellus]
Length = 1135
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 160/397 (40%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK E V D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKTEFINLSEKIKQGDDSLVFGVKPGDPRVMQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G G + + K E +V + + SN+ G F + I ++ + +
Sbjct: 819 LQYGDPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCSNESGSGKFKCICI--TMRVPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S +E + ++L G G ++
Sbjct: 937 SAALHGLCHDATPFIFSEENSASE----YFGEMLKAAGYNFYGTERLYSG---------- 982
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 983 ---ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1099 TVCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|330934625|ref|XP_003304626.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
gi|311318641|gb|EFQ87258.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
Length = 1214
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 133/309 (43%), Gaps = 66/309 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D K K+ + + K ++ N+ G + RQ+ LGDKFSS HGQKG G
Sbjct: 931 DKPEKYKNPDFSYIDKACVTENEAGVTLIKLLFRQT----RRPELGDKFSSRHGQKGTTG 986
Query: 119 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ Q T +++E GK G +G + Y T F ST
Sbjct: 987 LIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGST 1046
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
+ + + V + + G SGIT ++ F F
Sbjct: 1047 ---VEDMSKILVDKGFSYTGKDYLTSGITGEAHQFYTF--------------------FG 1083
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
I +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1084 PI-YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLL 1142
Query: 270 HERLKCKNVANVI-------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMG 321
ERL + A+ + Q G YC++C S + K +PY AKLL QEL S ++
Sbjct: 1143 LERLMLSSDAHTVDVCEKCGQMGYSG-YCKLCESEKAVRKITMPYAAKLLIQELGSMNVK 1201
Query: 322 ITLKFDTQL 330
+T+ + +
Sbjct: 1202 VTIGLEDEF 1210
>gi|344291448|ref|XP_003417447.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA2-like [Loxodonta africana]
Length = 1135
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 160/397 (40%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F Q
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIGAQ 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G + + K E +V + + SND G F V I ++ + +
Sbjct: 819 LQYGDPYYSYLNLNTGENFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G ++
Sbjct: 937 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTERLYSG---------- 982
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
I+ + L ++ IF + +YQ+ HM DK + R TG+ +T +PV R GGI FG
Sbjct: 983 ---ISGLEL-KADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1099 TLCNRSDTIDTVSVPYVFRYFVAELA-AMNIRVKLDV 1134
>gi|409095097|ref|ZP_11215121.1| DNA-directed RNA polymerase subunit B [Thermococcus zilligii AN1]
Length = 1120
Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats.
Identities = 97/333 (29%), Positives = 150/333 (45%), Gaps = 60/333 (18%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
++ V+ KD+ V ++ P F + Q + G I + + E S+ + +E G+V KV
Sbjct: 800 ESRVEGKDVLVGRTSPP----RFLEEQGRLGGIALQERRET----SVAARPSEEGIVDKV 851
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V++R + LGDKF+S HGQKGV+G + P + +
Sbjct: 852 IITETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVVGLI--VPQEDMPWTESGI 905
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 906 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRRELEEL 961
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH L+ D I L + IF + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 962 GFKHNGREILY----DGITGRRL-EAEIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1016
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI------Q 283
P R R GG+ FGEM+ D LI HGA+ L ERL C+N ++
Sbjct: 1017 PTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRD 1076
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RV YC +C + I K + Y KLL EL
Sbjct: 1077 RV----YCPVCGEEERISKVEISYAFKLLLDEL 1105
>gi|124805562|ref|XP_001350475.1| DNA-directed RNA polymerase III subunit, putative [Plasmodium
falciparum 3D7]
gi|23496598|gb|AAN36155.1|AE014845_10 DNA-directed RNA polymerase III subunit, putative [Plasmodium
falciparum 3D7]
Length = 1450
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 127/284 (44%), Gaps = 47/284 (16%)
Query: 60 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 119
+ IK K + K++ + N +G + +RQ+ LGDKFSS HGQKGV+G
Sbjct: 1173 NEIKYKSVYPSYIDKIIFTENSEGLKLYKIIMRQT----RLPELGDKFSSRHGQKGVVGL 1228
Query: 120 L-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
L Q E+ G C L+ F + V +LL + ++ + +
Sbjct: 1229 LVNQEDMPFTES----GICPDLIMNPHGFPSRMT----------VGKLLELVASKAAVMD 1274
Query: 179 FIFKHYFLFCLFECPMDWIA-------FICLVRSLIFTWIT-------------FYQQFI 218
+K+ +F P + IA F C + L+++ +T +YQ+
Sbjct: 1275 GEYKYGSIFS--GTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLK 1332
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK-CKN 277
HM +DK+ R G Q LT +P R + GG+ GEM+ DCLIA+G S L ERL +
Sbjct: 1333 HMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSD 1392
Query: 278 VANV-IQRVVG----GPYCRICNSADDIIKANVPYGAKLLSQEL 316
V NV I G YC C D I +PY KLL QEL
Sbjct: 1393 VCNVYICEDCGMMGYDLYCTFCKKCDKNIVIQMPYACKLLFQEL 1436
>gi|348558605|ref|XP_003465108.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
[Cavia porcellus]
Length = 1079
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 160/397 (40%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK E V D +V + DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKTEFINLSEKIKQGDDSLVFGVKPGDPRVMQKLDDDGLPFIGAK 762
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G G + + K E +V + + SN+ G F + I ++ + +
Sbjct: 763 LQYGDPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCSNESGSGKFKCICI--TMRVPRN 820
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 821 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGK 880
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S +E + ++L G G ++
Sbjct: 881 SAALHGLCHDATPFIFSEENSASE----YFGEMLKAAGYNFYGTERLYSG---------- 926
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 927 ---ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 982
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YC 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 983 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNC 1042
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1043 TVCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
Length = 1143
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 130/286 (45%), Gaps = 60/286 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 877 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVQQEDMPFSDQGV 932
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T +++E GK G +G + Y T F GG E +SQ+
Sbjct: 933 VPDIIMNPHGFPSRMTVGKMIELISGKAGVMNGSLEYGTCF----GGSKLED----MSQI 984
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
L G SG ++ CL ++ IF +YQ+ HM DK+
Sbjct: 985 LVDNGFNYSGKDMLYSGVTGECL--------------QAYIFFGPIYYQKLKHMVLDKMH 1030
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-- 284
R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A ++
Sbjct: 1031 ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMTSSDAFEVEVCE 1090
Query: 285 ---VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
++G +C C SA+ I K ++PY AKLL QEL SM I +
Sbjct: 1091 KCGLMGYSGWCTTCRSAEHINKMSIPYAAKLLFQEL-LSMNIAPRL 1135
>gi|76253769|ref|NP_956812.2| DNA-directed RNA polymerase I subunit RPA2 [Danio rerio]
gi|66911319|gb|AAH97040.1| Zgc:66298 [Danio rerio]
gi|182890886|gb|AAI65683.1| Zgc:66298 protein [Danio rerio]
Length = 1132
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 157/397 (39%), Gaps = 89/397 (22%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKS--------RPSD---------DMLNFGKIQS 43
+N++S E G YK E+ + +VK +P D D L F
Sbjct: 757 VNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVL 816
Query: 44 KSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHSA 101
K GD G + G H K+ E +V + + SN+ G F + + V +
Sbjct: 817 KYGDPFYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVP--RNP 874
Query: 102 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKG 135
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 875 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKS 934
Query: 136 AC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 194
A GL ATPF S E +LL G G + Y E
Sbjct: 935 ASLHGLCHDATPFTFSEENSALEH----FGELLKAAGYNYYGTE---RLYSGLSGLELEA 987
Query: 195 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 254
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGE
Sbjct: 988 D-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGE 1036
Query: 255 MKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YCR 292
M+ D L+AHG S LH+RL C + +++ ++ P C
Sbjct: 1037 MERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSTLLEKPPPNWSATRHRKTICL 1096
Query: 293 ICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+CN +D I +VPY K EL+ +M I +K D +
Sbjct: 1097 LCNKSDSIETVSVPYVFKYFVAELA-AMNIKIKLDVK 1132
>gi|417405959|gb|JAA49665.1| Putative rna polymerase ii second largest subunit [Desmodus rotundus]
Length = 1135
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 159/398 (39%), Gaps = 94/398 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG-------KIQSKSGD--IVIG 51
+N+AS E G YK+E D+ K + DD L FG +Q GD IG
Sbjct: 759 VNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPRTVQKLDGDGLPFIG 816
Query: 52 KYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMV 98
+ G + + K E +V + + SND G F V I +V +
Sbjct: 817 AQLQYGDPYYSYVNLNTGESSVMFYKSKENCIVDNIKVCSNDTGSGKFKCVCI--TVRIP 874
Query: 99 HSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAAL 132
+ +GDKF+S HGQKG+L L E P L+E+
Sbjct: 875 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMAPDILFNPHGFPSRMTIGMLIESMA 934
Query: 133 GKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK A GL ATPF S E + ++L G G + Y E
Sbjct: 935 GKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE---RLYSGISGLE 987
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 988 LEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIR 1036
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1037 FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1096
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D + +VPY + EL+ +M I +K D
Sbjct: 1097 NCTVCNRSDTVDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|195431078|ref|XP_002063575.1| GK21338 [Drosophila willistoni]
gi|194159660|gb|EDW74561.1| GK21338 [Drosophila willistoni]
Length = 999
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 132/298 (44%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K +E V +V++S+N + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 724 ISYKGSEPSYVERVMVSANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIV 779
Query: 121 --EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGV 154
E P + LE GK G +G Y T F S
Sbjct: 780 DQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGS---- 835
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
+ Q ++L+ G ++ K +F + P++ + I++ +Y
Sbjct: 836 ---KVQDIQAELVR------HGFNYMGKDFFYSGITGAPLE---------AYIYSGPVYY 877
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 878 QKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 937
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V + R+ +C C S+ + K ++PY KLL QEL+ SM + K
Sbjct: 938 ISSDAFEVDVCRICGRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELT-SMNVVPKL 994
>gi|340517820|gb|EGR48063.1| predicted protein [Trichoderma reesei QM6a]
Length = 1158
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 138/300 (46%), Gaps = 46/300 (15%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D ++ + + + KV++S + V RQ+ LGDKFSS HGQKGV+G
Sbjct: 873 DTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQT----RRPELGDKFSSRHGQKGVVG 928
Query: 119 FL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
+ +Q ++ G C ++ F + + V +LL C+ + S +
Sbjct: 929 IIVDQEDMPFADS----GLCPDIIMNPHGFPS----------RMTVGKLLECLTGKASIV 974
Query: 178 TFIFKHYFLFCLFECPMDWIAFICL--------------------VRSLIFTWITFYQQF 217
++ F P++ ++ + + + + IF +YQ+
Sbjct: 975 HGRKEYGFGDAFRSHPVEQVSKVLVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRL 1034
Query: 218 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN 277
HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL +
Sbjct: 1035 KHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSS 1094
Query: 278 ---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 330
+ ++ Q+ + G YC C S ++ K +PY AKLL QEL S ++G+ L+ + +
Sbjct: 1095 DGVMIDICQQCGLFGYRGYCGTCKSTREVTKMQMPYAAKLLVQELISMNVGVRLQLEDEF 1154
>gi|195153847|ref|XP_002017835.1| GL17093 [Drosophila persimilis]
gi|194113631|gb|EDW35674.1| GL17093 [Drosophila persimilis]
Length = 1137
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 128/298 (42%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K E V +V++S+N + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 862 ISYKGPEPSYVERVMVSANSEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIV 917
Query: 121 --EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGV 154
E P + LE GK G +G Y T F S G
Sbjct: 918 DQEDMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSKVGD 977
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
I + + G ++ K +F + P+ ++ I++ +Y
Sbjct: 978 IQAELE-------------RHGFNYMGKDFFYSGITGAPL---------QAYIYSGPVYY 1015
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 1016 QKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 1075
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V R+ +C C S+ + K ++PY KLL QEL+ SM + K
Sbjct: 1076 ISSDAFEVDVCRTCGRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELT-SMNVVPKM 1132
>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1159
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 131/297 (44%), Gaps = 64/297 (21%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 122
K E + +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 886 KGPEPSYIDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQKGVCGIIVQQE 941
Query: 123 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 157
T +++E GK G +G + Y T F G + +
Sbjct: 942 DMPFNDYGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFG---GSKLED 998
Query: 158 QHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 215
+ V + + G SGIT EC +++ IF +YQ
Sbjct: 999 MSKILVEKGFSYSGKDMLQSGITG-----------EC----------LQAYIFFGPIYYQ 1037
Query: 216 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC 275
+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL
Sbjct: 1038 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMI 1097
Query: 276 K------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V N + +C C S++++IK +PY AKLL QEL SM I +
Sbjct: 1098 SSDAFEVDVCNKCGLMGYNNWCTTCQSSENVIKMTIPYAAKLLFQEL-LSMNIAPRL 1153
>gi|124504400|gb|AAI28811.1| Zgc:66298 [Danio rerio]
Length = 1132
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 157/397 (39%), Gaps = 89/397 (22%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKS--------RPSD---------DMLNFGKIQS 43
+N++S E G YK E+ + +VK +P D D L F
Sbjct: 757 VNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVL 816
Query: 44 KSGDIVIGKYA-EIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHSA 101
K GD G + G H K+ E +V + + SN+ G F + + V +
Sbjct: 817 KYGDPFYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVP--RNP 874
Query: 102 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKG 135
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 875 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKS 934
Query: 136 AC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPM 194
A GL ATPF S E +LL G G + Y E
Sbjct: 935 ASLHGLCHDATPFTFSEENSALEH----FGELLKAAGYNYYGTE---RLYSGLSGLELEA 987
Query: 195 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 254
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FGE
Sbjct: 988 D-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGE 1036
Query: 255 MKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YCR 292
M+ D L+AHG S LH+RL C + +++ ++ P C
Sbjct: 1037 MERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLEKPPPNWSATRHRKTICL 1096
Query: 293 ICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+CN +D I +VPY K EL+ +M I +K D +
Sbjct: 1097 LCNKSDSIETVSVPYVFKYFVAELA-AMNIKIKLDVK 1132
>gi|426223599|ref|XP_004005962.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Ovis
aries]
Length = 1079
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 155/396 (39%), Gaps = 90/396 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQKLDDDGLPFIGAQ 762
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G + K E +V + + SND G F V I ++ + +
Sbjct: 763 LKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCI--TMRVPRN 820
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 821 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 880
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 881 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE---RLYSGISGLELE 933
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 934 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 982
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YC 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 983 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYSC 1042
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1043 ALCNRSDTIDTISVPYVFRYFVAELA-AMNIKVKLD 1077
>gi|448316022|ref|ZP_21505660.1| DNA-directed RNA polymerase subunit B' [Natronococcus jeotgali DSM
18795]
gi|242392382|dbj|BAH80404.1| RNA polymerase subunit B' [Natronococcus jeotgali]
gi|445610368|gb|ELY64142.1| DNA-directed RNA polymerase subunit B' [Natronococcus jeotgali DSM
18795]
Length = 609
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 127/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELREGLERNGFNSAGKETMYSGVSGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 606
>gi|426223603|ref|XP_004005964.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Ovis aries]
Length = 924
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 155/396 (39%), Gaps = 90/396 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 548 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQKLDDDGLPFIGAQ 607
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G + K E +V + + SND G F V I ++ + +
Sbjct: 608 LKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCI--TMRVPRN 665
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 666 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 725
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 726 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE---RLYSGISGLELE 778
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 779 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 827
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YC 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 828 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYSC 887
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 888 ALCNRSDTIDTISVPYVFRYFVAELA-AMNIKVKLD 922
>gi|386875149|ref|ZP_10117338.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
salaria BD31]
gi|386807028|gb|EIJ66458.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
salaria BD31]
Length = 671
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 141/317 (44%), Gaps = 60/317 (18%)
Query: 44 KSGDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GDI+IGK Y E + D SI ++ +E G++ V+++ +++G
Sbjct: 356 KGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSEAGVIDTVVMTQSNEGGKMYK 415
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFA 148
+ R + +GDKF+S HGQKGVLG L + A+ L + D L++ P A
Sbjct: 416 IRARD----MRIPEIGDKFASRHGQKGVLGILAK--AEDLPYTSEGISPDVLIN---PHA 466
Query: 149 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFK-----------HYFLFCLFECPMDW- 196
+ + +S + G R G F+ + H F + E D
Sbjct: 467 FPSRMTVGMMMESICGKAAAFRGKRFDGSAFVGEKMDEVKEVMDAHNFKYSGKEIMYDGR 526
Query: 197 --IAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 254
AF V F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGE
Sbjct: 527 TGKAFPVEV----FIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGE 582
Query: 255 MKCDCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADD 299
M+ DCLIA+GAS L +RL +C VA +V QR CR+C
Sbjct: 583 MERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAK 639
Query: 300 IIKANVPYGAKLLSQEL 316
+ +V Y KLL QE+
Sbjct: 640 VSSVSVAYAFKLLLQEM 656
>gi|25144348|ref|NP_498192.2| Protein RPC-2 [Caenorhabditis elegans]
gi|351060666|emb|CCD68383.1| Protein RPC-2 [Caenorhabditis elegans]
Length = 1154
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 128/302 (42%), Gaps = 60/302 (19%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI K +VLL+ N+D + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 874 DVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQT----RRPELGDKFSSRHGQKGVCG 929
Query: 119 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ Q T +L+E GK G +G Y T F
Sbjct: 930 LIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAF---- 985
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
GG +Q + +L C G ++ K + P+ + I+
Sbjct: 986 GG---DQVKDVCEELAAC------GYNYMGKDMLTSGITGQPLS---------AYIYFGP 1027
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1028 IYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIE 1087
Query: 272 RLKCKNVANVIQR-----VVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
RL + + V+G +C+ C S+ + +PY KLL QEL SM I +
Sbjct: 1088 RLMVSSDEFKVDVCTGCGVIGSKGWCQKCRSSKSMANIKIPYACKLLFQELQ-SMNIVPR 1146
Query: 326 FD 327
D
Sbjct: 1147 LD 1148
>gi|452208509|ref|YP_007488631.1| DNA-directed RNA polymerase subunit B' [Natronomonas moolapensis
8.8.11]
gi|452084609|emb|CCQ37956.1| DNA-directed RNA polymerase subunit B' [Natronomonas moolapensis
8.8.11]
Length = 608
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 130/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDE----RVPELGDKFASRHGQKGVVGHL 380
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q + L L +A P + G ++ + ++ + G R G F
Sbjct: 381 APQEDMPFTQEGLVPDLV--LNPHALPSRMTVGHIL----EMLGGKVGSLEGRRVDGTPF 434
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + + ++ + + + + + IF + FYQ+ HM +K+ R+
Sbjct: 435 LGENEDELREALVERGYKSDGKEVMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 494
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 495 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREEIYVCGQCG 554
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ D+ + + Y KLL E+ ++GI + + +
Sbjct: 555 MSAVENVEQRRV---YCPNCDEETDVHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|426223601|ref|XP_004005963.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Ovis aries]
Length = 996
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 155/396 (39%), Gaps = 90/396 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 620 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQKLDDDGLPFIGAQ 679
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G + K E +V + + SND G F V I ++ + +
Sbjct: 680 LKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCI--TMRVPRN 737
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 738 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 797
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 798 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE---RLYSGISGLELE 850
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 851 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 899
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YC 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 900 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYSC 959
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 960 ALCNRSDTIDTISVPYVFRYFVAELA-AMNIKVKLD 994
>gi|125808948|ref|XP_001360931.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
gi|54636103|gb|EAL25506.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
Length = 1137
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 128/298 (42%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K E V +V++S+N + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 862 ISYKGPEPSYVERVMVSANSEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIV 917
Query: 121 --EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGV 154
E P + LE GK G +G Y T F S G
Sbjct: 918 DQEDMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSKVGD 977
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
I + + G ++ K +F + P+ ++ I++ +Y
Sbjct: 978 IQAELE-------------RHGFNYMGKDFFYSGITGAPL---------QAYIYSGPVYY 1015
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 1016 QKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 1075
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V R+ +C C S+ + K ++PY KLL QEL+ SM + K
Sbjct: 1076 ISSDAFEVDVCRTCGRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELT-SMNVVPKM 1132
>gi|426223597|ref|XP_004005961.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Ovis
aries]
Length = 1135
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 155/396 (39%), Gaps = 90/396 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQKLDDDGLPFIGAQ 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G + K E +V + + SND G F V I ++ + +
Sbjct: 819 LKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCI--TMRVPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 937 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE---RLYSGISGLELE 989
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 990 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YC 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYSC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1099 ALCNRSDTIDTISVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1205
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 122/286 (42%), Gaps = 60/286 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++SS + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 935 KVMISSTEAENQLIKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFSDLGI 990
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G SY T F GG E+ +
Sbjct: 991 VPDIIMNPHGFPSRMTVGKMLELVAGKAGILSGQFSYGTAF----GGSPVEEMSAI---- 1042
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ KH F + +C I L + +F +YQ+ HM +DK+
Sbjct: 1043 -------------LVKHGFSYGGKDCLTSGITGESLP-AYVFMGPIYYQKLKHMVQDKMH 1088
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVAN 280
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL +V
Sbjct: 1089 SRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDQYEVDVCE 1148
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C+ C S+ ++K +PY AKLL QEL FSM + +
Sbjct: 1149 SCGFMGYSGWCQRCKSSRGVVKMIIPYAAKLLVQEL-FSMNVVARL 1193
>gi|341830387|gb|AEK93548.1| RNA polymerase subunit B' [Halomicrobium zhouii]
Length = 608
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 133/296 (44%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G V+ + ++ + G R G
Sbjct: 381 --APQEDM-PFTEQGVVPDLVLNPHALPSRMTVGHVL----EMLGGKVGSLEGRRVDGTA 433
Query: 179 FI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + + F+ + + + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEEELRGALVDHGFDSSGKEVMYSGVTGEKIEAEIFVGSIFYQKLYHMVSNKLHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C+ D+ + + Y KLL E+ ++GI + + +
Sbjct: 554 GMSAVENVEQRRI---YCPNCDEETDVHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|320581721|gb|EFW95940.1| DNA-directed RNA polymerase III [Ogataea parapolymorpha DL-1]
Length = 1138
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 128/289 (44%), Gaps = 60/289 (20%)
Query: 71 LVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-------- 122
+V +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 871 VVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQKGVCGIIVQQEDMPFND 926
Query: 123 ------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFV 163
T ++LE GK G DG + Y T F GG E +
Sbjct: 927 DGISPDIIMNPHGFPSRMTVGKMLELVSGKAGVLDGSLQYGTCF----GGSKLED----M 978
Query: 164 SQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSED 223
SQ+L G SG ++ L ++ IF +YQ+ HM D
Sbjct: 979 SQILIDKGFNYSGKDMLYSGITGEAL--------------QAYIFFGPIYYQKLKHMVLD 1024
Query: 224 KVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------N 277
K+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL +
Sbjct: 1025 KMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFDVD 1084
Query: 278 VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
V N + +C C +++ ++K +PY AKLL QEL SM I +
Sbjct: 1085 VCNSCGLMGYNSWCPSCKTSEGVVKMTIPYAAKLLFQEL-ISMNIAPRL 1132
>gi|237512127|gb|ACQ99755.1| RNA polymerase IV, partial [Heliosperma alpestre]
Length = 104
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 65/105 (61%), Gaps = 31/105 (29%)
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE------------------- 121
DDGKNFAVVS+RQ V S CLGDKFSSMHGQKGVLG+LE
Sbjct: 1 DDGKNFAVVSLRQ----VRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVIN 56
Query: 122 -------QTPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQ 158
QTPAQLLEAALGKG AC G + YATPF+T + ITEQ
Sbjct: 57 PHAFPSRQTPAQLLEAALGKGIACGGTLRYATPFSTPSVESITEQ 101
>gi|76800711|ref|YP_325719.1| DNA-directed RNA polymerase subunit B' [Natronomonas pharaonis DSM
2160]
gi|76556576|emb|CAI48147.1| DNA-directed RNA polymerase subunit B' [Natronomonas pharaonis DSM
2160]
Length = 610
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 132/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 327 SVTMRSGESGIVDTVTLMEGEDGSKLSKVKVRDE----RVPELGDKFASRHGQKGVVGHL 382
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + ++ + G R G F
Sbjct: 383 --APQEDMPFTQDGVVPDLILNPHALPSRMTVGHIL----EMLGGKVGSLEGRRVDGTPF 436
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + + IF + FYQ+ HM +K+ R+
Sbjct: 437 QGEDEDELRESLIDRGFKSNGKEVMYSGITGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 496
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 497 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREDIYVCGQCG 556
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ D+ + + Y KLL E+ ++GI + + +
Sbjct: 557 MSAVENVEQRRV---YCPNCDEETDVHEVEMSYAFKLLLDEMK-ALGIAPRIELE 607
>gi|395853612|ref|XP_003799298.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Otolemur
garnettii]
Length = 1078
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 160/397 (40%), Gaps = 93/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIGAK 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD G Y + S + K E +V + + SND G F + I ++ +
Sbjct: 763 LQYGDPYYG-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGRFKCICI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFLEQT---------------------PAQ-----LLEAALG 133
+ +GDKF+S HGQKG+L L T P++ L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPTEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S + + ++L G G + Y E
Sbjct: 880 KSAALHGLCHDATPFTFSENSAL-----EYFGEMLKAAGYNFYGTE---RLYSGISGLEL 931
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 932 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 980
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 981 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYN 1040
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1041 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1076
>gi|449515913|ref|XP_004164992.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 719
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 174/409 (42%), Gaps = 91/409 (22%)
Query: 1 MNQASLECGVFRSESYKAE-VDNKDIQVKSRPSDDMLNFGKIQSKSGDIV-------IGK 52
+N++S+E G+F + Y+ E +D D +S S M I + I+ +G+
Sbjct: 320 LNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQ 379
Query: 53 -----------YAEI-GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 100
Y E+ G ++KLK +E +V V + + N V+IR +
Sbjct: 380 MIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKN-NPQKVNIR--FRRPRN 436
Query: 101 ACLGDKFSSMHGQKGVLGFL---------------------------EQTPAQLLEAALG 133
+GDKFSS HGQKGV L T A L+E+
Sbjct: 437 PMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAA 496
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
KG C +G ATPF +S ++ L++ +G+ + I F ++ L L+
Sbjct: 497 KGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLVDELGS--TLIKKGFNYHGLEVLYSG 554
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
+ + IF +YQ+ HM DK + R+TG+ +T +P+ RK+ GGI F
Sbjct: 555 -----VYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRF 609
Query: 253 GEMKCDCLIAHGASGNLHERLKC---KNVANV-------------------IQRVVGGP- 289
GEM+ D ++AHGAS LH+RL ++A+V ++ + G P
Sbjct: 610 GEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPP 669
Query: 290 -------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
C C ++ + +PY K L+ EL+ + +K QLS
Sbjct: 670 GKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELA---AMNIKMTLQLS 715
>gi|242392386|dbj|BAH80406.1| RNA polymerase subunit B' [Natronolimnobius baerhuensis]
Length = 609
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 126/313 (40%), Gaps = 76/313 (24%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P +LE GK GA +G TPF G
Sbjct: 382 APQEDMPFTEEGVVPDLVLNPHALPSRMTVGHILEMIGGKLGAMEGRRVDGTPF---LGE 438
Query: 154 VITEQHQSFVSQLLNCIGARN--SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
E N G SG+T + + IF I
Sbjct: 439 DEDELRDGLEDNGFNSAGKETMYSGVTG---------------------EKIEAEIFVGI 477
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
FYQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D I HGA+ L E
Sbjct: 478 IFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKE 537
Query: 272 RL-------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL +C V NV QR V YC C+ DI + + Y KLL E+
Sbjct: 538 RLLDESDREYINICAQCGMSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEM 594
Query: 317 SFSMGITLKFDTQ 329
++GI + + +
Sbjct: 595 K-ALGIAPRLELE 606
>gi|115503929|ref|XP_001218757.1| DNA-directed RNA polymerase III [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|83642239|emb|CAJ15945.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261325981|emb|CBH08807.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
gambiense DAL972]
Length = 1129
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 142/324 (43%), Gaps = 33/324 (10%)
Query: 36 LNFGKIQSKSG-----DIVIGKYAEIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNF 86
LN I SK DI++ KY + + + + K+ + +V V++S D
Sbjct: 810 LNSDGIASKGAVVRQFDILVNKYTPVPSMEPRPNPLVYKYPQPAVVDHVVISPPGDSDRS 869
Query: 87 AVVS--IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYA 144
V I+ V GDKFSS HGQKGV+G + +G C ++
Sbjct: 870 MDVEQKIKVVTREVRGPEPGDKFSSRHGQKGVVGLITDGVNMPFNE---QGICPDMIMNP 926
Query: 145 TPFATS-TGGVITEQHQSFVSQLLNCIG---------ARNSGITFIFKHYFLFCLFECPM 194
F + T G + E S VS L G A + G I +H + + +
Sbjct: 927 HGFPSRMTVGKLLELVSSKVSALTGKFGDGTAFGGDKAEDLGEELI-RHGYNYHGKDIFY 985
Query: 195 DWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 254
+ ++R+ +F +YQ+ HM DK+ R TG LT +P R R GG+ GE
Sbjct: 986 SGVTGE-MLRAYVFFGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSRSGGLRVGE 1044
Query: 255 MKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG----GPYCRICNSADDIIKANVPYG 308
M+ DC++ +GAS L+ERL + I R G YC CN+ + + + NVPY
Sbjct: 1045 MERDCMVGYGASNLLNERLLVSSDLFTIDICRCCGFMGYNGYCSYCNAKNTVSRVNVPYA 1104
Query: 309 AKLLSQELSFSMGITLKFDTQLSG 332
KLL QEL MGI+ + G
Sbjct: 1105 FKLLLQELQ-GMGISTRLSLDFMG 1127
>gi|344303893|gb|EGW34142.1| DNA-directed RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
Length = 1155
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 130/295 (44%), Gaps = 60/295 (20%)
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-- 122
K E V +V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 882 KGPEPSYVDQVMMSVSDNDQALIKVLLRQT----RRPELGDKFSSRHGQKGVCGIIVQQE 937
Query: 123 ------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITE 157
T +++E GK G +G + Y T F GG E
Sbjct: 938 DLPFNDMGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF----GGSKLE 993
Query: 158 QHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQF 217
+S++L G SG ++ CL ++ IF +YQ+
Sbjct: 994 D----MSKILVDKGFSYSGKDMLYSGITGECL--------------QAYIFFGPIYYQKL 1035
Query: 218 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK- 276
HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL
Sbjct: 1036 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISS 1095
Query: 277 -----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
++ N + +C C S+++IIK +P AKLL QEL SM I +
Sbjct: 1096 DAFEVDICNKCGLMGYNSWCTTCKSSENIIKMTIPCAAKLLFQEL-LSMNIAPRL 1149
>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
Length = 1179
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS Y++ D + ++ +P+ DD +
Sbjct: 801 MNASAVERGFFRSIFYRSYKDQESKKIGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIA 860
Query: 39 GKIQSKSGDIVIGKYAE---------------IGADHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+++E G+V +V+++ N +G
Sbjct: 861 PGVRVSGDDVIIGKTITLPENDDELEGSTKKYVKRDASTFLRNSETGIVDQVMITLNSEG 920
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F+ + +R V +GDKF+S HGQKG G E P
Sbjct: 921 YKFSKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 976
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 977 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISSLLQEYGYHLRG 1029
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1030 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1075
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1076 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1135
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1136 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1176
>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
Length = 952
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 135/322 (41%), Gaps = 90/322 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS Y+A D + ++ +P DD +
Sbjct: 657 MNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVA 716
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK A I D S L+ TE GLV +VL+++N +G
Sbjct: 717 PGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEG 776
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG--FLEQ------------------- 122
F V +R + +GDKF+S HGQKG +G +++Q
Sbjct: 777 LRFVKVRMRTT----KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHA 832
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K GL ATPF TE VS+LL G + G
Sbjct: 833 IPSRMTIAHLIECQLSKVSTLRGLEGDATPF--------TEVTVDSVSKLLRAHGYHSRG 884
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 885 FEIMYHGHTGRKMM--------------AQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 930
Query: 237 TGRPVADRKRFGGIEFGEMKCD 258
T +PV R R GG+ FGEM+ D
Sbjct: 931 TRQPVEGRARDGGLRFGEMERD 952
>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
Length = 1206
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 113/245 (46%), Gaps = 59/245 (24%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACL---GDKFSSMHGQKG 115
D S+ L+ E G++ +V+L++ND+G+ F + +R + C+ GDKF+S HGQKG
Sbjct: 895 DASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVR-------TICIPQVGDKFASRHGQKG 947
Query: 116 VLGF---LEQTP-----------------------AQLLEAALGK-GACDGLMSYATPFA 148
G +E P L+EA + K A G ATPF
Sbjct: 948 TCGITYTMEDMPFSAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVAALMGSEGDATPFT 1007
Query: 149 TSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 208
T VSQ+L+ +G + G ++ + L R+ IF
Sbjct: 1008 KVT--------VDNVSQMLHDLGYQRRGWEVMYNGHTGRQL--------------RAQIF 1045
Query: 209 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 268
T+YQ+ HM + K+ R G Q LT +P R R GG+ FGEM+ DC+I+HGA+
Sbjct: 1046 LNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRARDGGLRFGEMERDCIISHGAAAF 1105
Query: 269 LHERL 273
L ERL
Sbjct: 1106 LKERL 1110
>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
adamanteus]
Length = 1167
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +PS DD L
Sbjct: 789 MNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPSRETCQGMRHAIYDKLDDDGLIA 848
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 849 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMITLNQEG 908
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 909 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 964
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 965 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1017
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1018 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1063
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1064 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANT 1123
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1124 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1164
>gi|219116230|ref|XP_002178910.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409677|gb|EEC49608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1211
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 124/291 (42%), Gaps = 55/291 (18%)
Query: 72 VLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------- 120
V KVL++SN++ + V +RQ V +GDKF+S HGQKGV G +
Sbjct: 941 VDKVLITSNENEQFLIKVMLRQ----VRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEF 996
Query: 121 ---------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVS 164
T +LLE +GK G +G Y++ F G T Q S
Sbjct: 997 GHVPDLIMNPHGFPSRMTVGKLLELLVGKAGLYEGRQGYSSAFGEEFGSADTAQSAS--E 1054
Query: 165 QLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
LL RN G+ + K P+D + IF+ FYQ+ HM DK
Sbjct: 1055 ALL-----RN-GLNYTGKDILYSGTNGEPLD---------AYIFSGPVFYQKLKHMVLDK 1099
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK------CKNV 278
R G LT +P R R GG+ GEM+ DCLIA+G S + ERL NV
Sbjct: 1100 AHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLIMERLMHSSDAFSANV 1159
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ +C+ C S + + +PY KLL QEL SM + + Q
Sbjct: 1160 CLTCGLLQYEGWCQYCRSGEKVADIRLPYACKLLFQELQ-SMNVLPRLRLQ 1209
>gi|90079569|dbj|BAE89464.1| unnamed protein product [Macaca fascicularis]
Length = 501
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 123 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 182
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 183 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 242
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 243 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 298
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 299 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 351
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 352 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 397
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 398 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 457
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 458 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 498
>gi|291386321|ref|XP_002709638.1| PREDICTED: RNA polymerase I polypeptide B isoform 2 [Oryctolagus
cuniculus]
Length = 1079
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 157/398 (39%), Gaps = 94/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK E V D ++ R DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKTEFIDLSEKIKQGDDSLVFGVKPGDPRILQRLDDDGLPFIGTK 762
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G G + K E +V + + SND G F + I ++ + +
Sbjct: 763 LQYGDPYYGYLNLNTGESFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPRN 820
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 821 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 880
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSF--VSQLLNCIGARNSGITFIFKHYFLFCLFE 191
A GL ATPF S EQ+ + ++L G G + Y E
Sbjct: 881 SAALHGLCHDATPFTFS------EQNSALDHFGEMLKAAGYNFYGTE---RLYSGISGLE 931
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 932 LEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIR 980
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 981 FGEMERDALLAHGTSFLLHDRLFNCSDRSIAHVCVECGSLLSPLLEKPPPSWSAMRNRKY 1040
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1041 NCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1077
>gi|291386319|ref|XP_002709637.1| PREDICTED: RNA polymerase I polypeptide B isoform 1 [Oryctolagus
cuniculus]
Length = 1135
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 157/398 (39%), Gaps = 94/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK E V D ++ R DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKTEFIDLSEKIKQGDDSLVFGVKPGDPRILQRLDDDGLPFIGTK 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G G + K E +V + + SND G F + I ++ + +
Sbjct: 819 LQYGDPYYGYLNLNTGESFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSF--VSQLLNCIGARNSGITFIFKHYFLFCLFE 191
A GL ATPF S EQ+ + ++L G G + Y E
Sbjct: 937 SAALHGLCHDATPFTFS------EQNSALDHFGEMLKAAGYNFYGTE---RLYSGISGLE 987
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 988 LEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIR 1036
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1037 FGEMERDALLAHGTSFLLHDRLFNCSDRSIAHVCVECGSLLSPLLEKPPPSWSAMRNRKY 1096
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1097 NCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
Length = 1176
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 162/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNK---------DIQVKSRPS-------------DDMLNF 38
MN +++E G FRS Y+A D + + +R S DD +
Sbjct: 798 MNTSAVERGFFRSVFYRAYKDQECKRSGDQEEQFEKPTRESCQGMRNAIYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D++IGK + D S L+++E G+V +V+++ N++G
Sbjct: 858 PGIRVSGDDVIIGKTITLPITDDELEGTTKRFSKRDASTFLRNSETGIVDQVMVTLNNEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 974 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTV-------NVQKISNLLQEYGYQLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNG--------------QTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRVHVCNLCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1173
>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
Length = 1148
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 126/286 (44%), Gaps = 60/286 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ LGDKFSS HGQKGV G + E P
Sbjct: 882 QVMMSVSDNDQALIKVLLRQH----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGV 937
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F GG E +S++
Sbjct: 938 VPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCF----GGSKLED----MSKI 989
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
L G SG ++ CL ++ IF +YQ+ HM DK+
Sbjct: 990 LVEKGFNYSGKDMLYSGITGECL--------------QAYIFFGPIYYQKLKHMVLDKMH 1035
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV 286
R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +
Sbjct: 1036 ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCA 1095
Query: 287 G------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+C C SA+++IK +PY AKLL QEL SM I +
Sbjct: 1096 KCGLMGYSGWCTTCKSAENVIKMTIPYAAKLLFQEL-LSMNIAPRL 1140
>gi|320101550|ref|YP_004177142.1| DNA-directed RNA polymerase subunit B' ;DNA-directed RNA polymerase
subunit B' [Desulfurococcus mucosus DSM 2162]
gi|319753902|gb|ADV65660.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
subunit B' [Desulfurococcus mucosus DSM 2162]
Length = 1165
Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats.
Identities = 93/331 (28%), Positives = 142/331 (42%), Gaps = 81/331 (24%)
Query: 46 GDIVIGKYA----------EIGA-----DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 90
GD++IGK + E+G+ D S+ ++H E+G+V VL++ + +G V
Sbjct: 847 GDVLIGKISPPRFLSAQEYEVGSTLTRQDTSVVMRHEEKGVVDTVLITMDSEGNKLIKVR 906
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTP 124
+R + LGDKF+S HGQKGV+G L T
Sbjct: 907 VRD----LRIPELGDKFASRHGQKGVVGLLVPQYDMPFTEEGVVPDLIINPHAFPSRMTV 962
Query: 125 AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKH 183
AQL+E+ GK A +G ATPF + E+ Q + + G +G ++
Sbjct: 963 AQLMESIAGKAAALEGRTFDATPFYKTP----IEELQVIIKRH----GYSPTGEEAMYDG 1014
Query: 184 YFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243
L + P +F + +YQ+ HM DK+ R G Q LT +P
Sbjct: 1015 R-TGELLDAP-------------VFIGVVYYQKLHHMVSDKMHARARGPVQILTRQPTEG 1060
Query: 244 RKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRVVGGPYC 291
R R GG+ +GEM+ DCL+ HG++ L E + ++ + +I R G C
Sbjct: 1061 RSRAGGLRWGEMEVDCLVGHGSAMLLKEAMTDRSDSTIIYVCELCGSMGWYDRNKGKYMC 1120
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGI 322
+ + V Y KLL QEL S+GI
Sbjct: 1121 PVHKERGVLKPVEVSYAFKLLLQEL-MSLGI 1150
>gi|448297908|ref|ZP_21487942.1| DNA-directed RNA polymerase subunit B' [Natronorubrum tibetense
GA33]
gi|242392396|dbj|BAH80411.1| RNA polymerase subunit B' [Natronorubrum tibetense]
gi|445592634|gb|ELY46820.1| DNA-directed RNA polymerase subunit B' [Natronorubrum tibetense
GA33]
Length = 609
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 126/293 (43%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L G R G F
Sbjct: 382 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDEDELRGGLEDAGFNSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C+ DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
Length = 1174
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 163/404 (40%), Gaps = 102/404 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K ++ +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + VS LL+ G G
Sbjct: 972 IPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGRKL--------------TSQIFVGPTYYQRLKHMVDDKIHSRARGPVQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
Y CR C + I +PY KLL QEL SM I + T
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRMMT 1173
>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
Length = 1176
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +A D++ +V +P+ DD +
Sbjct: 797 MNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D++IGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVIIGKTITLPENDDELEGTTRRYTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISALLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+F + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMFNGHSGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
Length = 1174
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 KEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
Length = 1174
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 110/405 (27%), Positives = 166/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVD-----NKDIQVK-SRPS----------------DDMLNF 38
MN +++E G+FRS Y++ D N D + + +P+ DD +
Sbjct: 796 MNASAVERGLFRSVFYRSYKDSESKRNGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 856 PGLRVSGDDVVIGKTITLPENEDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 971
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 972 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1071 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNLCGLIAIANM 1130
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1131 RNNTFE---CKGCKNKTQISQVKLPYAAKLLFQEL-MSMNIAPRL 1171
>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
niloticus]
Length = 1174
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 163/404 (40%), Gaps = 102/404 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K ++ +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + VS LL+ G G
Sbjct: 972 IPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGRKL--------------TSQIFIGPTYYQRLKHMVDDKIHSRARGPVQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
Y CR C + I +PY KLL QEL SM I + T
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRMMT 1173
>gi|350581974|ref|XP_003124849.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Sus
scrofa]
Length = 1135
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 156/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 759 LNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVRPGDPRVAQKLDDDGLPFVGAQ 818
Query: 43 SKSGDIVIGKYAEIGADHS--IKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + ND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYS 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CSLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
Length = 1151
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +A D++ +V +P+ DD +
Sbjct: 772 MNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIA 831
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D++IGK + D S L+++E G+V +V+L+ N +G
Sbjct: 832 PGIRVSGDDVIIGKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 891
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 892 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 947
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 948 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISALLQEYGYQLRG 1000
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+F + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1001 NEVMFNGHSGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1046
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1047 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1106
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1107 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1147
>gi|341830391|gb|AEK93550.1| RNA polymerase subunit B' [Halomicrobium katesii]
Length = 608
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 130/295 (44%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 380
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G V+ + ++ G R G F
Sbjct: 381 --APQEDMPFTEDGVVPDLILNPHALPSRMTVGHVL----EMLGGKVGALEGRRVDGTAF 434
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ F+ + + + V + IF FYQ+ HM +K+ R+
Sbjct: 435 TGEDEAELRGALEDRGFKSSGKEVMYSGVTGEKVEAEIFVGTIFYQKLYHMVSNKLHARS 494
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ G M+ D LI HGA+ L ERL +C
Sbjct: 495 RGPVQVLTRQPTEGRAREGGLRVGHMERDVLIGHGAAMVLKERLLDESDREWIKICGECG 554
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C DI + +PY KLL E+ ++GI + + +
Sbjct: 555 MAAVENVEQRRI---YCPNCEEETDIHEVEMPYAFKLLLDEMK-ALGIAPRIELE 605
>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
carolinensis]
Length = 1174
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIKVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
Length = 1226
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 848 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 907
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 908 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 967
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 968 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 1023
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 1024 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1076
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1077 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1122
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1123 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1182
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1183 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1223
>gi|209876614|ref|XP_002139749.1| DNA-directed RNA polymerase, beta subunit family protein
[Cryptosporidium muris RN66]
gi|209555355|gb|EEA05400.1| DNA-directed RNA polymerase, beta subunit family protein
[Cryptosporidium muris RN66]
Length = 1219
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 131/295 (44%), Gaps = 48/295 (16%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
IK K + +VLL+ N +G + + RQ+ LGDKFSS HGQKGV+G +
Sbjct: 946 IKYKGIAPSYIDRVLLTENSEGSHIYKIITRQT----RLPELGDKFSSRHGQKGVVGLIV 1001
Query: 121 EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI 180
Q E+ G C L+ F + + V +L+ I ++ S +
Sbjct: 1002 SQEDFPFSES----GWCPDLIMNPHGFPS----------RMTVGKLMELISSKASVLDGN 1047
Query: 181 FKHYFLF----------CLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSE 222
+++ F CL + + L + + IF FYQ+ HM
Sbjct: 1048 YRYGTAFGGTPVEDAAKCLIQNGFHYSGKEYLTSGITGEAIETYIFVGPIFYQKLRHMVL 1107
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI 282
DK+ R G Q LT +P R + GG+ GEM+ DCL+A+GAS L ERL ++V
Sbjct: 1108 DKMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIERLMLN--SDVF 1165
Query: 283 QRVVGGP--------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ V YC C ++DDI +PY KLL QEL +M + + T+
Sbjct: 1166 ETYVCNKCGLFGYNNYCHYCRNSDDISIIRLPYACKLLFQELQ-AMNVCPRIKTK 1219
>gi|449300576|gb|EMC96588.1| hypothetical protein BAUCODRAFT_33950 [Baudoinia compniacensis UAMH
10762]
Length = 1214
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 134/308 (43%), Gaps = 60/308 (19%)
Query: 48 IVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 107
+ + A+I A + K + KV++ + + + RQ+ +GDKF
Sbjct: 921 VSVAASAQIWAPEHMSYKLPDPCYADKVMVGTTESNHTIFKIQTRQT----RRPEVGDKF 976
Query: 108 SSMHGQKGVLGFLEQ-----------TP---------------AQLLEAALGK-GACDGL 140
SS HGQKGV+G + + TP ++LE GK G G
Sbjct: 977 SSRHGQKGVVGIIAEQADMPFSDSGITPDIIMNPHGFPSRMTVGKMLELVAGKAGVLKGT 1036
Query: 141 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 200
Y T F G + E + Q G ++ K +C I
Sbjct: 1037 QEYGTAFG---GSKVEEMGNELIRQ----------GFSYSGK--------DCVTSGITGE 1075
Query: 201 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 260
L + F I +YQ+ HM +DK+ R+TG LT +P R R GG+ GEM+ DCL
Sbjct: 1076 SLPAYVFFGPI-YYQKLKHMVQDKMHARSTGPRAILTRQPTEGRSRAGGLRLGEMERDCL 1134
Query: 261 IAHGASGNLHERLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQ 314
IA+GAS L ERL + A+ + ++G +C C+S+ ++K +PY AKLL Q
Sbjct: 1135 IAYGASQLLLERLMLSSDAHEVDVCETCGMMGYNNWCTSCSSSVGVVKMTMPYAAKLLIQ 1194
Query: 315 ELSFSMGI 322
EL SM +
Sbjct: 1195 EL-LSMNV 1201
>gi|350581976|ref|XP_003481167.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Sus scrofa]
Length = 1079
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 154/396 (38%), Gaps = 90/396 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 703 LNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVRPGDPRVAQKLDDDGLPFVGAQ 762
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G + K E +V + + ND G F V I ++ + +
Sbjct: 763 LQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVCI--TMRVPRN 820
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 821 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 880
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G ++ E
Sbjct: 881 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTERLYSG---ISGLELE 933
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 934 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFG 982
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YC 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 983 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYSC 1042
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1043 SLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1077
>gi|4867868|emb|CAB43076.1| RNA polymerase II [Neuburgia corynocarpum]
Length = 258
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 106/242 (43%), Gaps = 53/242 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
DHS L+H+E G+V +VLL++N DG V +R V +GD+FSS HGQKG +G
Sbjct: 12 DHSTSLRHSENGVVDQVLLTTNADGLRLVKVRVRS----VRIPQIGDRFSSRHGQKGTVG 67
Query: 119 FLEQTPAQLLEAALGKGACDGLMSYAT---PFATS--TGGVITEQH----QSFVSQLLNC 169
M+Y PF T VI H + + QL+ C
Sbjct: 68 ----------------------MTYTQEDMPFTIEGITPDVIVNPHAIPSRMTIGQLIEC 105
Query: 170 I--------GARNSGITF--IFKHYFLFCLFECPMDWIAFICL--------VRSLIFTWI 211
I G F + L +C F + + + IF
Sbjct: 106 IMHKVAAQMGKEGDATPFTDVTVENISRALHKCSYQMRGFERMYNGHTGRPLTATIFLGP 165
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q LT +P R R G++FGE + DC+IAHGA+ L E
Sbjct: 166 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDDGLQFGERERDCMIAHGAAHFLKE 225
Query: 272 RL 273
RL
Sbjct: 226 RL 227
>gi|284162088|ref|YP_003400711.1| RNA polymerase Rpb2 domain 6 [Archaeoglobus profundus DSM 5631]
gi|284012085|gb|ADB58038.1| RNA polymerase Rpb2 domain 6 [Archaeoglobus profundus DSM 5631]
Length = 603
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 158/378 (41%), Gaps = 75/378 (19%)
Query: 1 MNQASLECGVFRS---ESYKAE-------------------VDNKDIQVKSRPSDDMLNF 38
+N+AS++ G+ R+ +Y+AE D + + +D L F
Sbjct: 224 LNKASVDRGLARTHFFRTYEAEELRYPGGQEDRFEIPPSDVADYRGAEAYKNLDEDGLIF 283
Query: 39 GKIQSKSGDIVIGKYA--------------EIGADHSIKLKHTERGLVLKVLLSSNDDGK 84
+ + D++IG+ + + + SI ++ E+G+V V L ++ G
Sbjct: 284 PETEVGPDDVLIGRTSPPRFLEEPTLGISPQKRRESSITMRSNEKGIVDAVFLMQSESGS 343
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-Y 143
A V +R + +GDKF+S HGQKGV+G + P + + D +++ +
Sbjct: 344 KLAKVRVRD----LRIPEIGDKFASRHGQKGVVGLI--VPEEDMPWTESGIVPDMIINPH 397
Query: 144 ATPFATSTGGVITEQHQSFVSQLLNCI-GARNSGITF----------IFKHY-FLFCLFE 191
A P + G ++ + + C+ G R G F + K Y F+ E
Sbjct: 398 AIPSRMTVGHIL-----EMIGGKVGCLEGRRVDGTIFHGEKEKDLREVLKKYGFVHTGKE 452
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D I IF + +YQ+ HM +K+ R+ G Q LT +P R R GG+
Sbjct: 453 VMYDGITGKRFEVD-IFVGVIYYQKLYHMVANKIHARSRGPVQILTRQPTEGRARKGGLR 511
Query: 252 FGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSAD 298
GEM+ D LI HGA+ L +RL KC +VA R YC +C
Sbjct: 512 LGEMERDVLIGHGAALLLKDRLLEESDKVEVWVCAKCGHVATYDYR-RNTAYCHVCEDDS 570
Query: 299 DIIKANVPYGAKLLSQEL 316
+ K + Y KLL EL
Sbjct: 571 HVYKVEMSYAFKLLLDEL 588
>gi|3005758|gb|AAC09367.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
Length = 476
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 98 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 157
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 158 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 217
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 218 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 273
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 274 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 326
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 327 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 372
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 373 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 432
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 433 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 473
>gi|409722465|ref|ZP_11269915.1| DNA-directed RNA polymerase subunit B' [Halococcus hamelinensis
100A6]
gi|448722477|ref|ZP_21705011.1| DNA-directed RNA polymerase subunit B' [Halococcus hamelinensis
100A6]
gi|242392328|dbj|BAH80345.1| RNA polymerase subunit B' [Halococcus hamelinensis 100A6]
gi|445789202|gb|EMA39891.1| DNA-directed RNA polymerase subunit B' [Halococcus hamelinensis
100A6]
Length = 613
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 129/294 (43%), Gaps = 42/294 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 330 SVTMRSGEAGVVDTVTLMQGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVIGHI 385
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G V+ + ++ + G R G
Sbjct: 386 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHVL----EMLGGKVGSLEGRRVDGTA 438
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L + D + + + IF FYQ+ HM +K+ R
Sbjct: 439 FTGEEEEELRGALEDHGFDSSGKERMYSGVTGEKIDAEIFVGTIFYQKLYHMVSNKIHAR 498
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN- 277
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL C N
Sbjct: 499 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREFIYVCGNC 558
Query: 278 ----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + D
Sbjct: 559 GMSAVENVEQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLD 608
>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Canis lupus familiaris]
gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Ailuropoda melanoleuca]
gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Felis catus]
gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
Length = 1174
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|338970350|gb|AEJ33656.1| RNA polymerase subunit B' [Halorubellus litoreus]
Length = 609
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 130/311 (41%), Gaps = 72/311 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 381
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P +LE GK GA +G TPF
Sbjct: 382 APQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKTGALEGRRVDGTPF------ 435
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
T +++ + L G +SG ++ + + IF + F
Sbjct: 436 --TGENEDEIRGGLEDRGFHSSGKEILYSG--------------VSGEKIEAEIFVGVIF 479
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
YQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL
Sbjct: 480 YQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERL 539
Query: 274 -------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
+C V NV QR V YC C DI + + Y KLL E+
Sbjct: 540 LDESDREFINVCGECGMSAVENVDQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK- 595
Query: 319 SMGITLKFDTQ 329
++GI + + +
Sbjct: 596 ALGIAPRLELE 606
>gi|338970348|gb|AEJ33655.1| RNA polymerase subunit B' [Halorubellus salinus]
Length = 609
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 130/311 (41%), Gaps = 72/311 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 381
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P +LE GK GA +G TPF
Sbjct: 382 APQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKTGALEGRRVDGTPF------ 435
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
T +++ + L G +SG ++ + + IF + F
Sbjct: 436 --TGENEDEIRGGLEDRGFHSSGKEILYSG--------------VSGEKIEAEIFVGVIF 479
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
YQ+ HM +K+ R+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL
Sbjct: 480 YQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERL 539
Query: 274 -------------KC--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
+C V NV QR V YC C DI + + Y KLL E+
Sbjct: 540 LDESDREFINVCGECGMSAVENVDQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK- 595
Query: 319 SMGITLKFDTQ 329
++GI + + +
Sbjct: 596 ALGIAPRLELE 606
>gi|363756358|ref|XP_003648395.1| hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
gi|356891595|gb|AET41578.1| Hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
Length = 1141
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 142/319 (44%), Gaps = 60/319 (18%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 100
+ + + D V+ + + I + E + +V++S +D+ + V +RQ+
Sbjct: 842 VPTNASDSVLTQSQSQYREAPIIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQN----RR 897
Query: 101 ACLGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGK 134
LGDKFSS HGQKGV G + Q T +++E GK
Sbjct: 898 PELGDKFSSRHGQKGVCGIIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGK 957
Query: 135 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
G +G + Y T F S + +S++L G SG ++ CL
Sbjct: 958 AGVLNGTLEYGTCFGGSK--------LADMSEILINNGFNYSGKDMLYSGITGECL---- 1005
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
++ +F +YQ+ HM DK+ R G LT +P R R GG+ G
Sbjct: 1006 ----------QAYVFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1055
Query: 254 EMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPY 307
EM+ DC+IA+GAS L ERL + A +V + ++G +C C SA+ +IK +PY
Sbjct: 1056 EMERDCVIAYGASQLLLERLMLSSDAFEVDVCDKCGLMGYSGWCTSCKSAEHVIKITIPY 1115
Query: 308 GAKLLSQELSFSMGITLKF 326
AKLL QEL SM I +
Sbjct: 1116 AAKLLFQEL-LSMNIAPRL 1133
>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
partial [Takifugu rubripes]
Length = 982
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 163/404 (40%), Gaps = 102/404 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K ++ +P+ DD L
Sbjct: 604 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYEKLDDDGLIA 663
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 664 PGVRVSGEDVIIGKTVTLPDNEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 723
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 724 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 779
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + VS LL+ G G
Sbjct: 780 IPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRG 832
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 833 NEVLYNGFTGRKL--------------TSQIFIGPTYYQRLKHMVDDKIHSRARGPVQIL 878
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 879 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANT 938
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
Y CR C + I +PY KLL QEL SM I + T
Sbjct: 939 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRMMT 981
>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
Length = 1174
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D + ++ +P+ DD +
Sbjct: 796 LNASAVERGFFRSVFYRSYKDAESKRLGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 856 PGIRVSGDDVVIGKTITLPENDDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 972 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1071 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1130
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1131 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1171
>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
[Canis lupus familiaris]
gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Felis catus]
Length = 1099
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 721 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 780
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 781 PGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 840
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 841 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 896
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 897 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 949
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 950 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 995
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 996 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1055
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1056 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1096
>gi|121703239|ref|XP_001269884.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
gi|119398027|gb|EAW08458.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
Length = 1246
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 148/352 (42%), Gaps = 83/352 (23%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYAE-------IGADHSIKLKHT---------ERGLVLKV 75
SD + G+ Q +G++ I K IG+D +++T + + KV
Sbjct: 919 SDGLAAVGE-QVNAGEVYINKSTPDQSHMSGIGSDAGRPIQYTPTPMTYKLHDPAYIDKV 977
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------- 120
+ S ++ V +RQ+ +GDKFSS HGQKGV+G +
Sbjct: 978 MYSVQENENQLVKVLVRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDLGINP 1033
Query: 121 -----------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLN 168
T ++LE GK G G Y T F G + E ++ ++ N
Sbjct: 1034 DIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCFG---GTPVEETSRTLIAHGFN 1090
Query: 169 CIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
G SGIT ++ +FT +YQ+ HM +DK+
Sbjct: 1091 YGGKEYLTSGITGEALPFY---------------------VFTGPIYYQKLKHMVQDKMH 1129
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-- 284
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + I
Sbjct: 1130 SRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCE 1189
Query: 285 ---VVGG-PYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKFDTQL 330
+G +C+ C S+ ++K +PY AKLL QEL SM +T LK D +
Sbjct: 1190 QCGFMGYLNWCQRCKSSRSVVKMTIPYAAKLLIQEL-MSMNVTARLKLDDEF 1240
>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Equus caballus]
Length = 1174
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
Length = 1175
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D + ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPTRATCQGMRNALYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-----------TP-------- 124
F + +R V +GDKF+S HGQKG G + TP
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTAEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Pan
troglodytes]
gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
jacchus]
gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
[Pongo abelii]
gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
leucogenys]
gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
porcellus]
gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cricetulus griseus]
gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Otolemur garnettii]
gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Papio anubis]
gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
largest subunit [human, HeLa cells, Peptide, 1174 aa]
gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted) [Rattus
norvegicus]
gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
Length = 1174
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|86451151|gb|ABC96798.1| RNA polymerase II [Coptosapelta diffusa]
Length = 214
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 105/234 (44%), Gaps = 53/234 (22%)
Query: 67 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQT 123
+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G E
Sbjct: 1 SETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGLTYTQEDM 56
Query: 124 P-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQH 159
P QL+E +GK A G ATPF T
Sbjct: 57 PFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT-------- 108
Query: 160 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
+S+ L+ G + G ++ + L + IF T+YQ+ H
Sbjct: 109 VDNISKALHACGYQMRGFERMYNGHTGRPLT--------------ATIFLGPTYYQRLKH 154
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
M +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 155 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 208
>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
Length = 1117
Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats.
Identities = 102/381 (26%), Positives = 169/381 (44%), Gaps = 80/381 (20%)
Query: 1 MNQASLECGVFRS---ESYKAE--------VDNKDIQVKS-----------RPSDDMLNF 38
+N+AS+E G+ RS +Y+AE D +I + +D L F
Sbjct: 737 INKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPAPTVRGYRGEKYYRNLDEDGLIF 796
Query: 39 GKIQSKSGDIVIGKYAE--------IGA-------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ + + D++IG+ + +G+ + S+ ++ +E+G+V KV+++ DG
Sbjct: 797 PESRVEGKDVLIGRTSPPRFLEERGLGSVALQERRETSVAVRPSEKGVVDKVIITETGDG 856
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V++R + LGDKF+S HGQKGV+G + P + + D +++
Sbjct: 857 TKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVPDLIVNP 910
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FKHYFLF 187
+ P + G +I ++ ++ + G R G FI FKH
Sbjct: 911 HGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEELGFKHTGRE 966
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
++ D I L + IF + +YQ+ HM DK+ R+ G Q LT +P R R
Sbjct: 967 IMY----DGITGRRL-EADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRARE 1021
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGPYCRICN 295
GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + YC +C
Sbjct: 1022 GGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAIEDKRRHKVYCPVCG 1081
Query: 296 SADDIIKANVPYGAKLLSQEL 316
+ I K + Y KLL EL
Sbjct: 1082 EEERISKVEMSYAFKLLLDEL 1102
>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
domestica]
gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
harrisii]
Length = 1174
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1167
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 789 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIA 848
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 849 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 908
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 909 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 964
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 965 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1017
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1018 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1063
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1064 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1123
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1124 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1164
>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Papio anubis]
Length = 1083
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 705 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 764
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 765 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 824
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 825 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 880
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 881 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 933
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 934 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 979
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 980 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1039
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1040 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1080
>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1208
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 126/292 (43%), Gaps = 62/292 (21%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------- 120
KVL+S+ + V RQ+ +GDKFSS HGQKGV+G +
Sbjct: 938 KVLVSATEGETQLIKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFSDQGI 993
Query: 121 -------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y T F G + E Q +
Sbjct: 994 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFG---GSPVQEMSQILI--- 1047
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ K Y + P+ + +FT +YQ+ HM +DK+
Sbjct: 1048 -------DKGFSYGGKDYLTSGITGEPLPF---------YVFTGPIYYQKLKHMVQDKMH 1091
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQ 283
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL ++ ++ +
Sbjct: 1092 SRAKGPTATLTRQPTEGRSRNGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDICE 1151
Query: 284 RVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKFDTQL 330
+ Y C C S+ ++K +PY AKLL QEL SM +T LK D +
Sbjct: 1152 KCGFMGYLNWCPGCKSSRSVVKMVIPYAAKLLIQEL-MSMNVTARLKLDDEF 1202
>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1174
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
rotundus]
Length = 1144
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 766 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 825
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 826 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 885
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 886 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 941
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 942 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 994
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 995 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1040
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1041 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1100
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1101 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1141
>gi|351699694|gb|EHB02613.1| DNA-directed RNA polymerase I subunit RPA2 [Heterocephalus glaber]
Length = 1129
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 159/397 (40%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N++S E G YK E V D ++ + DD L F +
Sbjct: 753 VNKSSWERGFAHGSVYKTEFINLSEKFKQGADSLVFGVKPGDPRIMQKLDDDGLPFIGAK 812
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G G + + K E +V + + SND G F + I ++ + +
Sbjct: 813 LQYGDPHYGYLNLSTGESYVVYYKSKENCIVDNIKVCSNDSGSGKFKCICI--TMRVPRN 870
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 871 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 930
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G ++
Sbjct: 931 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTERLYSG---------- 976
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 977 ---ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 1032
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1033 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNC 1092
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+CN +D I +VPY + EL+ +M I +K D
Sbjct: 1093 TVCNRSDTIDTVSVPYVFRYFVAELA-AMNIRVKLDV 1128
>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
Length = 807
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 429 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 488
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 489 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 548
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 549 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 604
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 605 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 657
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 658 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 703
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 704 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 763
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 764 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 804
>gi|448366554|ref|ZP_21554677.1| DNA-directed RNA polymerase subunit B' [Natrialba aegyptia DSM
13077]
gi|242392356|dbj|BAH80391.1| RNA polymerase subunit B' [Natrialba aegyptia]
gi|445654009|gb|ELZ06865.1| DNA-directed RNA polymerase subunit B' [Natrialba aegyptia DSM
13077]
Length = 609
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 128/293 (43%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTENGVVPDLIVNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESELRDGLEDAGFNSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINVCGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Pongo abelii]
gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1167
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 789 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 848
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 849 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 908
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 909 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 964
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 965 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1017
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1018 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1063
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1064 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1123
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1124 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1164
>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
Length = 1167
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 789 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 848
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 849 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 908
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 909 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 964
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 965 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1017
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1018 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1063
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1064 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1123
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1124 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1164
>gi|86451161|gb|ABC96803.1| RNA polymerase II [Ixora parviflora]
Length = 214
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 108/240 (45%), Gaps = 53/240 (22%)
Query: 67 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQT 123
+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G E
Sbjct: 1 SETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDM 56
Query: 124 P-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQH 159
P QL+E +GK A G ATPF T
Sbjct: 57 PFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT-------- 108
Query: 160 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
+S+ L+ G + G ++ + L + IF T+YQ+ H
Sbjct: 109 VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGPTYYQRLKH 154
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA 279
M +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL K+ A
Sbjct: 155 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFAKSDA 214
>gi|448737567|ref|ZP_21719607.1| DNA-directed RNA polymerase subunit B' [Halococcus thailandensis
JCM 13552]
gi|242392226|dbj|BAH80350.1| RNA polymerase subunit B' [Halococcus thailandensis]
gi|445803711|gb|EMA53994.1| DNA-directed RNA polymerase subunit B' [Halococcus thailandensis
JCM 13552]
Length = 611
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 129/294 (43%), Gaps = 42/294 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 328 SVTMRSGESGIVDTVTLMQGEDGSKLSKVSVRDQ----RVPELGDKFASRHGQKGVVGHI 383
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G V+ + ++ + G R G
Sbjct: 384 --APQEDM-PFTEEGVVPDLIVNPHALPSRMTVGHVL----EMLGGKVGSLEGRRVDGTA 436
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L E D + + + IF FYQ+ HM +K+ R
Sbjct: 437 FTGEEEEELRDSLEEHGFDSSGKEIMHSGVTGEKIDAEIFVGTIFYQKLYHMVSNKIHAR 496
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 497 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREFIYVCGEC 556
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 557 GMSAVENVEQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 606
>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
Length = 1176
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G G
Sbjct: 973 IPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAV-------NVQKISSLLQEYGYHLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B [Oryctolagus
cuniculus]
Length = 1174
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFLGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|355712704|gb|AES04438.1| polymerase I polypeptide B, 128kDa [Mustela putorius furo]
Length = 496
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 158/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F Q
Sbjct: 121 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIGAQ 180
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD G Y + S + K E +V + + SND G F + I ++ +
Sbjct: 181 LQYGDPYYG-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGNGKFKCICI--TMRVPR 237
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 238 NPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 297
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + +LL G G + Y E
Sbjct: 298 KSAALHGLCHDATPFTFSEENSALE----YFGELLKAGGYNFYGTE---RLYSGISGLEL 350
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 351 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRF 399
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 400 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSATRNRKYN 459
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 460 CTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 495
>gi|288931147|ref|YP_003435207.1| DNA-directed RNA polymerase subunit B [Ferroglobus placidus DSM
10642]
gi|288893395|gb|ADC64932.1| DNA-directed RNA polymerase subunit B [Ferroglobus placidus DSM
10642]
Length = 604
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 163/378 (43%), Gaps = 76/378 (20%)
Query: 2 NQASLECGVFRS---ESYKAE----VDNKDIQVKSRPSD---------------DMLNFG 39
N+AS+E G+ RS +Y+AE ++ + + PSD D L
Sbjct: 225 NKASIERGLGRSHFYRTYEAEEIRYPGGQEDKFEIPPSDVNGYRGAEAYIHLDEDGLVVP 284
Query: 40 KIQSKSGDIVIGKYA-----------EIGA----DHSIKLKHTERGLVLKVLLSSNDDGK 84
+ + D++IGK + E+ + S+ ++ E G+V V L+ +++G
Sbjct: 285 ETEVGPDDVLIGKTSPPRFLEEPTRLEVSPQKRRETSVTMRSNESGIVDAVFLTLSENGA 344
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-Y 143
A V +R LGDKF+S HGQKGV+G + P + + D +++ +
Sbjct: 345 KLAKVRVRDQ----RIPELGDKFASRHGQKGVIGLI--VPEEDMPFTESGIVPDMIINPH 398
Query: 144 ATPFATSTGGVITEQHQSFVSQLLNCIGARN-SGITF-----------IFKHYFLFCLFE 191
A P + G V+ + + I AR G F + K+ F + E
Sbjct: 399 AIPSRMTVGHVL-----EMIGGKIGAIEARRVDGTIFHGEKEEDLREALKKYGFSYTGKE 453
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D I V + IF + +Y++ HM K+ R+ G Q LT +P R R GG+
Sbjct: 454 VMYDGITGKRFV-AEIFVGVIYYEKLYHMVSSKIHARSRGPVQILTRQPTEGRSRKGGLR 512
Query: 252 FGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSAD 298
FGEM+ D LI HGA+ L +RL C +VA + YC++C+
Sbjct: 513 FGEMERDVLIGHGAALLLKDRLLEESDKVEVWVCGNCGHVATYDYK-RNTAYCKVCDDES 571
Query: 299 DIIKANVPYGAKLLSQEL 316
++ K + Y KLL EL
Sbjct: 572 NVHKIEMSYAFKLLLDEL 589
>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
Length = 1167
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 789 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 848
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 849 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 908
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 909 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 964
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 965 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1017
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1018 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1063
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1064 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1123
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1124 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1164
>gi|448350440|ref|ZP_21539253.1| DNA-directed RNA polymerase subunit B' [Natrialba taiwanensis DSM
12281]
gi|242392366|dbj|BAH80396.1| RNA polymerase subunit B' [Natrialba taiwanensis DSM 12281]
gi|445636710|gb|ELY89870.1| DNA-directed RNA polymerase subunit B' [Natrialba taiwanensis DSM
12281]
Length = 609
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 128/293 (43%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTENGVVPDLIVNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESELRDGLEDAGFNSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINICGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM 3638]
gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM 3638]
gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
Length = 1117
Score = 100 bits (250), Expect = 7e-19, Method: Composition-based stats.
Identities = 85/288 (29%), Positives = 133/288 (46%), Gaps = 51/288 (17%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ +E+G+V KV+++ DG V++R + LGDKF+S HGQKGV+G +
Sbjct: 834 SVAVRPSEKGVVDKVIITETGDGTKLVKVTVRD----LRIPELGDKFASRHGQKGVIGLI 889
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ + P + G +I ++ ++ + G R G F
Sbjct: 890 --VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAF 943
Query: 180 I---------------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
I FKH ++ D I L + IF + +YQ+ HM DK
Sbjct: 944 IGEPEEKLRKELEELGFKHTGREIMY----DGITGKRL-EADIFIGVIYYQRLHHMVADK 998
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------K 274
+ R+ G Q LT +P R R GG+ FGEM+ D L+ HGA+ L ERL
Sbjct: 999 IHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWV 1058
Query: 275 CKNVANVI------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
C+N ++ +RV YC +C + I K + Y KLL EL
Sbjct: 1059 CENCGHIALEDKRRRRV----YCPVCGEEERISKVEMSYAFKLLLDEL 1102
>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
str. Silveira]
Length = 1197
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 146/347 (42%), Gaps = 78/347 (22%)
Query: 19 EVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLS 78
+V + ++ + ++ L+ G S +G G A I + + KL + + KV++S
Sbjct: 878 KVSSGEVYINKATPENALSSGITGSDAG----GPIAYIPSPQTYKL--PDPSYIDKVMIS 931
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ---------------- 122
+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 932 TTEGENQLLKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDII 987
Query: 123 ----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 171
T ++LE GK G G Y T F G + E +S+ N G
Sbjct: 988 MNPHGFPSRMTVGKMLELVAGKAGILSGQFGYGTAFG---GSPVEEMSAILISKGFNYGG 1044
Query: 172 AR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
SGIT + + +FT +YQ+ HM +DK+ R
Sbjct: 1045 KDYLTSGITG---------------------EALPAYVFTGPIYYQKLKHMVQDKMHSRA 1083
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVA 279
G LT +P R R GG+ GEM+ DCLIA+G S L ERL C+N
Sbjct: 1084 RGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCENCG 1143
Query: 280 NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +
Sbjct: 1144 --FMGYLG--WCQRCKTSRGVVKMVIPYAAKLLVQEL-FSMNVVARL 1185
>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
Length = 1174
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 163/404 (40%), Gaps = 102/404 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K ++ +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCSGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGEDVIIGKTVTLPETDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + VS LL+ G G
Sbjct: 972 IPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
Y CR C + I +PY KLL QEL SM I + T
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRMMT 1173
>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
gorilla gorilla]
Length = 1097
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 719 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 778
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 779 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 838
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 839 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 894
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 895 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 947
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 948 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 993
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 994 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1053
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1054 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1094
>gi|448363837|ref|ZP_21552432.1| DNA-directed RNA polymerase subunit B' [Natrialba asiatica DSM
12278]
gi|242392358|dbj|BAH80392.1| RNA polymerase subunit B' [Natrialba asiatica]
gi|445645421|gb|ELY98425.1| DNA-directed RNA polymerase subunit B' [Natrialba asiatica DSM
12278]
Length = 609
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 128/293 (43%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTENGVVPDLIVNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESELRDGLEDAGFNSAGKETMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFINICGQCG 555
Query: 276 -KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 556 MSAVENVEQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 604
>gi|255713708|ref|XP_002553136.1| KLTH0D09812p [Lachancea thermotolerans]
gi|238934516|emb|CAR22698.1| KLTH0D09812p [Lachancea thermotolerans CBS 6340]
Length = 1144
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 143/332 (43%), Gaps = 73/332 (21%)
Query: 41 IQSKSGDIVIGKYAEIGADHSI----KLKHTERGLVLK---------VLLSSNDDGKNFA 87
++ +SG I + K A S+ + ++ E +V + V++S +++ +
Sbjct: 832 MKVESGQIYVNKSVPTNASDSVLTQSQAQYRETPVVYRAPEPSHIDQVMMSVSENDQALI 891
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------E 121
V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 892 KVLLRQN----RRPELGDKFSSRHGQKGVCGIIVNHEDLPFNDQGVVPDIIMNPHGFPSR 947
Query: 122 QTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI 180
T +++E GK G +G + Y T F GG E +SQ+L G SG +
Sbjct: 948 MTVGKMIELISGKAGVLNGSLEYGTCF----GGSKLEN----MSQILVNHGFNYSGKDML 999
Query: 181 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 240
+ CL ++ IF +YQ+ HM DK+ R G LT +P
Sbjct: 1000 YSGITGECL--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQP 1045
Query: 241 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQRVVGGPYCRIC 294
R R GG+ GEM+ DC+IA+GAS L ERL +V N + +C C
Sbjct: 1046 TEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYSGWCTSC 1105
Query: 295 NSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
A+++IK +PY AKLL QEL SM I +
Sbjct: 1106 KGAENVIKMTIPYAAKLLFQEL-LSMNIAPRL 1136
>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
[Pongo abelii]
gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Otolemur garnettii]
gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1099
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 721 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 780
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 781 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 840
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 841 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 896
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 897 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 949
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 950 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 995
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 996 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1055
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1056 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1096
>gi|374635617|ref|ZP_09707212.1| DNA-directed RNA polymerase subunit B [Methanotorris formicicus
Mc-S-70]
gi|373561683|gb|EHP87912.1| DNA-directed RNA polymerase subunit B [Methanotorris formicicus
Mc-S-70]
Length = 599
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 163/396 (41%), Gaps = 104/396 (26%)
Query: 1 MNQASLECGVFRS------ESYK-----AEVDNKDIQVKS----RPSDDMLNFGK----- 40
+N+AS++ G+ RS +SY+ +VD +I K R + N G+
Sbjct: 212 INKASIDRGLGRSTFFRTYDSYEKRYPGGQVDRFEIPEKGVRGYRAEEAYRNLGEDGLVE 271
Query: 41 --IQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ KSGD++IGK + EI D S+ ++H E G+V V+LS +G
Sbjct: 272 PECEVKSGDVIIGKTSPPRFLEEHEISLQTKSQRRDTSVTVRHGEEGVVDCVILSETKEG 331
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + LGDKF+S HGQKGV+G + P + + D +++
Sbjct: 332 NRLVKVRVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPFTESGIVPDLIINP 385
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITFI-------------- 180
+A P + G Q+L IG R G F
Sbjct: 386 HAIPSRMTVG------------QVLEMIGGKVGSLECRRVDGTIFSGEKEWDLRKALEEH 433
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH+ +++ + IF + +YQ+ H+ K+ R+ G Q LT +
Sbjct: 434 GFKHHGKEVMYDGKTGKKFEVE-----IFIGVVYYQKLHHLVAGKIHARSRGPVQVLTRQ 488
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV 286
P R R GG+ FGEM+ D L+ HGA+ L ERL C +A +
Sbjct: 489 PTEGRAREGGLRFGEMERDVLVGHGAAMLLKERLLDESDPDDEYVCVNCGEIA-IFDHRR 547
Query: 287 GGPYCRICNSADD------IIKANVPYGAKLLSQEL 316
G YC IC ++ I +PY KLL EL
Sbjct: 548 GIKYCPICGETEELHDNRKIPSVRIPYAFKLLLDEL 583
>gi|242392332|dbj|BAH80347.1| RNA polymerase subunit B' [Halococcus qingdaonensis]
Length = 611
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 129/294 (43%), Gaps = 42/294 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 328 SVTMRSGESGIVDTVTLMQGEDGSKLSKVSVRDQ----RVPELGDKFASRHGQKGVVGHI 383
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G V+ + ++ + G R G
Sbjct: 384 --APQEDM-PFTEEGVVPDLIVNPHALPSRMTVGHVL----EMLGGKVGSLEGRRVDGTA 436
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L E D + + + IF FYQ+ HM +K+ R
Sbjct: 437 FTGEEEEELRDSLEEHGFDSSGKEIMHSGVTGEKIDAEIFVGTIFYQKLYHMVSNKIHAR 496
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 497 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREFIYVCGEC 556
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 557 GMSAVENVEQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 606
>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Loxodonta africana]
Length = 1010
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 632 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 691
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 692 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 751
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 752 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 807
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 808 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSEYGYHLRG 860
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 861 NEVLYNGFTGRK--------------ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 906
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 907 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 966
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 967 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1007
>gi|448411894|ref|ZP_21576250.1| DNA-directed RNA polymerase subunit B' [Halosimplex carlsbadense
2-9-1]
gi|242392288|dbj|BAH80381.1| RNA polymerase subunit B' [Halosimplex carlsbadense 2-9-1]
gi|445669828|gb|ELZ22436.1| DNA-directed RNA polymerase subunit B' [Halosimplex carlsbadense
2-9-1]
Length = 609
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 132/297 (44%), Gaps = 44/297 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 381
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ + G R G
Sbjct: 382 --APQEDM-PFTEQGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGSLEGRRVDGTA 434
Query: 179 F-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
F + H F+ E I + + IF FYQ+ HM +K+
Sbjct: 435 FTGEDEDELRGSLEDHGFMSSGKEIMYSGITG-EQIEAEIFLGTIFYQKLYHMVSNKIHA 493
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------K 274
R+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +
Sbjct: 494 RSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREFINVCGE 553
Query: 275 C--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
C V NV QR V YC C+ +I + + Y KLL E+ ++GI + + +
Sbjct: 554 CGMTAVENVEQRRV---YCPNCDEETEIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 606
>gi|119182523|ref|XP_001242390.1| hypothetical protein CIMG_06286 [Coccidioides immitis RS]
gi|392865284|gb|EAS31067.2| DNA-directed RNA polymerase III polypeptide [Coccidioides immitis RS]
Length = 1233
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 146/347 (42%), Gaps = 78/347 (22%)
Query: 19 EVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLS 78
+V + ++ + ++ L+ G S +G G A I + + KL + + KV++S
Sbjct: 914 KVSSGEVYINKATPENALSSGITGSDAG----GPIAYIPSPQTYKL--PDPSYIDKVMIS 967
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ---------------- 122
+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 968 TTEGENQLLKVQTRQT----RRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDII 1023
Query: 123 ----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIG 171
T ++LE GK G G Y T F G + E +S+ N G
Sbjct: 1024 MNPHGFPSRMTVGKMLELVAGKAGILSGQFGYGTAFG---GSPVEEMSAILISKGFNYGG 1080
Query: 172 AR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
SGIT + + +FT +YQ+ HM +DK+ R
Sbjct: 1081 KDYLTSGITG---------------------EALPAYVFTGPIYYQKLKHMVQDKMHSRA 1119
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVA 279
G LT +P R R GG+ GEM+ DCLIA+G S L ERL C+N
Sbjct: 1120 RGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCENCG 1179
Query: 280 NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +
Sbjct: 1180 --FMGYLG--WCQRCKTSRGVVKMVIPYAAKLLVQEL-FSMNVVARL 1221
>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
Length = 1175
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 797 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 857 PGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 973 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1072 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1131
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1132 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1172
>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
guttata]
Length = 1174
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|150399423|ref|YP_001323190.1| DNA-directed RNA polymerase subunit B' [Methanococcus vannielii SB]
gi|160370008|sp|P41557.2|RPOB1_METVS RecName: Full=DNA-directed RNA polymerase subunit B'
gi|150012126|gb|ABR54578.1| RNA polymerase Rpb2 domain 6 [Methanococcus vannielii SB]
Length = 611
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 167/401 (41%), Gaps = 95/401 (23%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFG------ 39
+N+ASLE G+ RS SY++ ++D ++ K R + N G
Sbjct: 225 INKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLID 284
Query: 40 -KIQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + +SGD+++GK + EI D S+ ++H E G+V V+LS +G
Sbjct: 285 LESEVRSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + GDKF+S HGQKGV+G + P + L D +++
Sbjct: 345 NRLGKVRVRD----LRVPEFGDKFASRHGQKGVIGLV--VPQEDLPFTEDGVIPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITF------IFKHYFLFC 188
+A P + G Q+L IG R G F +H
Sbjct: 399 HAIPSRMTIG------------QVLEMIGGKVGSLECRRVDGTIFSGEGEWALRHALENY 446
Query: 189 LFECPMDWIAFICLV-RSL---IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 244
F + R L IF + +YQ+ H+ K+ R+ G Q LT +P R
Sbjct: 447 GFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGR 506
Query: 245 KRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYC 291
R GG+ FGEM+ D L+AHGA+ L ERL KC +A + G +C
Sbjct: 507 AREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKFC 565
Query: 292 RICNSADD------IIKANVPYGAKLLSQELSFSMGITLKF 326
+C ++D I + Y KLL EL SMGI K
Sbjct: 566 PVCGESEDIQDNRKIPPVKIAYAFKLLLDELK-SMGIDPKL 605
>gi|403284743|ref|XP_003933716.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2, partial [Saimiri boliviensis boliviensis]
Length = 992
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 614 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 673
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 674 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 733
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 734 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 789
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 790 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 842
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 843 NEVLYNGFTGRK--------------ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 888
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 889 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 948
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 949 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 989
>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
Length = 1167
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 789 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 848
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 849 PGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 908
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 909 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 964
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 965 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1017
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1018 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1063
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1064 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1123
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1124 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1164
>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
Length = 1174
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>gi|359321637|ref|XP_003639648.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
[Canis lupus familiaris]
Length = 1135
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 162/398 (40%), Gaps = 94/398 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------KIQSKSGD---IVIG 51
+N+AS E G YK+E D+ K + DD L FG +I K D IG
Sbjct: 759 VNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIG 816
Query: 52 KYAEIGADHSIKL------------KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMV 98
+ G + L K E +V + + SND G F V I ++ +
Sbjct: 817 ARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNGRFKCVCI--TMRVP 874
Query: 99 HSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAAL 132
+ +GDKF+S HGQKG+L L E P L+E+
Sbjct: 875 RNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMA 934
Query: 133 GKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK A GL ATPF S E + +LL G G ++
Sbjct: 935 GKSAALHGLCHDATPFTFSEENSALE----YFGELLKAAGYNFYGTERLYSG-------- 982
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
I+ I L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 983 -----ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIR 1036
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1037 FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1096
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1097 NCTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|581388|emb|CAA51727.1| DNA-directed RNA polymerase [Methanococcus vannielii]
Length = 614
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 167/401 (41%), Gaps = 95/401 (23%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFG------ 39
+N+ASLE G+ RS SY++ ++D ++ K R + N G
Sbjct: 228 INKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLID 287
Query: 40 -KIQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + +SGD+++GK + EI D S+ ++H E G+V V+LS +G
Sbjct: 288 LESEVRSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEG 347
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + GDKF+S HGQKGV+G + P + L D +++
Sbjct: 348 NRLGKVRVRD----LRVPEFGDKFASRHGQKGVIGLV--VPQEDLPFTEDGVIPDLIINP 401
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITF------IFKHYFLFC 188
+A P + G Q+L IG R G F +H
Sbjct: 402 HAIPSRMTIG------------QVLEMIGGKVGSLECRRVDGTIFSGEGEWALRHALENY 449
Query: 189 LFECPMDWIAFICLV-RSL---IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 244
F + R L IF + +YQ+ H+ K+ R+ G Q LT +P R
Sbjct: 450 GFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGR 509
Query: 245 KRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYC 291
R GG+ FGEM+ D L+AHGA+ L ERL KC +A + G +C
Sbjct: 510 AREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKFC 568
Query: 292 RICNSADD------IIKANVPYGAKLLSQELSFSMGITLKF 326
+C ++D I + Y KLL EL SMGI K
Sbjct: 569 PVCGESEDIQDNRKIPPVKIAYAFKLLLDELK-SMGIDPKL 608
>gi|384497113|gb|EIE87604.1| DNA-directed RNA polymerase III subunit RPC2 [Rhizopus delemar RA
99-880]
Length = 1146
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 129/298 (43%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE 121
++ K + G + KVL ++ + + V+IRQ+ LGDKFSS HGQKGV G +
Sbjct: 870 MRYKSPQTGYIDKVLFTTTESDQTLIKVNIRQT----RRPELGDKFSSRHGQKGVCGIIV 925
Query: 122 Q--------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGV 154
Q T +++E GK G DG + Y T F GG
Sbjct: 926 QQEDMPFSDLGVCPDIIMNPHGFPSRMTVGKMIELLAGKAGVLDGSLQYGTAF----GGS 981
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
E +S++L N G + K Y + P+ + IF +Y
Sbjct: 982 KVED----MSRILI-----NHGFNYSGKDYVTSGITGEPLS---------AYIFFGPIYY 1023
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM DK+ R G LT +P R R GG+ GEM+ D LI +GAS L ERL
Sbjct: 1024 QKLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDALIGYGASMLLLERLM 1083
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V N + +C+ C S+ + +PY AKLL QEL +M I+ +
Sbjct: 1084 VSSDIFEVHVCNECGFIGYSGWCQFCKSSKFMKAMKIPYAAKLLFQEL-LAMNISPRL 1140
>gi|158297007|ref|XP_317312.4| AGAP008151-PA [Anopheles gambiae str. PEST]
gi|157014987|gb|EAA12689.4| AGAP008151-PA [Anopheles gambiae str. PEST]
Length = 1089
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 60/289 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ---------- 122
+VL+S+N++ + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 826 RVLVSTNNEEEFLVKILLRQT----RRPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDYGM 881
Query: 123 TPAQLLEA-------ALGK---------GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+P ++ +GK G +G Y T F S + Q + F
Sbjct: 882 SPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAFGGSKCSDL--QDELF---- 935
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
N G ++ K F + P++ I++ +YQ+ HM +DK+
Sbjct: 936 -------NHGFNYLGKDVFYSGITGEPLE---------VYIYSGPVYYQKLKHMVQDKMH 979
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVAN 280
R G LT +P R R GG+ GEM+ DCLI++GAS + ERL +V N
Sbjct: 980 ARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFDVDVCN 1039
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V R+ +C C S+ + ++PY KLL QEL+ SM I + Q
Sbjct: 1040 VCGRLAYSSWCHNCRSSASVSTISMPYACKLLFQELT-SMNIVPRLKLQ 1087
>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
Length = 1172
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 131/310 (42%), Gaps = 71/310 (22%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+++E G+V +V+L+ N +G F + +R V +GDKF+S HGQKG G
Sbjct: 889 DASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCG 944
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
E P L+E GK GA G + ATPF +
Sbjct: 945 IQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFNDAV 1004
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ +S LL G G ++ + + + +F
Sbjct: 1005 -------NVQKISTLLQEYGYHLRGNEVMYNGHTGRK--------------INAQVFLGP 1043
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IAHGA+ L E
Sbjct: 1044 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRE 1103
Query: 272 RL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C +AN+ C+ C + I + +PY AKLL QEL
Sbjct: 1104 RLFEVSDPYRIHVCNFCGLIAIANLRSNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL 1160
Query: 317 SFSMGITLKF 326
SM I +
Sbjct: 1161 -MSMNIAPRL 1169
>gi|449458081|ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 1173
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 173/410 (42%), Gaps = 93/410 (22%)
Query: 1 MNQASLECGVFRSESYKAE-VDNKDIQVKSRPSDDMLNFGKIQSKSGDIV-------IGK 52
+N++S+E G+F + Y+ E +D D +S S M I + I+ +G+
Sbjct: 774 LNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQ 833
Query: 53 -----------YAEI-GADHSIKLKHTERGLVLKVLLS-SNDDGKNFAVVSIRQSVNMVH 99
Y E+ G ++KLK +E +V V + N + + R+ N
Sbjct: 834 MIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRN--- 890
Query: 100 SACLGDKFSSMHGQKGVLGFL---------------------------EQTPAQLLEAAL 132
+GDKFSS HGQKGV L T A L+E+
Sbjct: 891 -PMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVA 949
Query: 133 GKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
KG C +G ATPF +S ++ L++ +G+ + I F ++ L L+
Sbjct: 950 AKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLVDELGS--TLIKKGFNYHGLEVLYS 1007
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
+ + IF +YQ+ HM DK + R+TG+ +T +P+ RK+ GGI
Sbjct: 1008 G-----VYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIR 1062
Query: 252 FGEMKCDCLIAHGASGNLHERLKC---KNVANV-------------------IQRVVGGP 289
FGEM+ D ++AHGAS LH+RL ++A+V ++ + G P
Sbjct: 1063 FGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLP 1122
Query: 290 --------YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
C C ++ + +PY K L+ EL+ + +K QLS
Sbjct: 1123 PGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELA---AMNIKMTLQLS 1169
>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
Length = 1168
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 790 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 849
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 850 PGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 909
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 910 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 965
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 966 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1018
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1019 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1064
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1065 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1124
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1125 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1165
>gi|301781943|ref|XP_002926383.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
[Ailuropoda melanoleuca]
Length = 1079
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 160/398 (40%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F Q
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIGAQ 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F + I ++ +
Sbjct: 763 LQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + +LL G G ++
Sbjct: 880 KSAALHGLCHDATPFTFSEENSALE----YFGELLKAAGYNFYGTERLYSG--------- 926
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
I+ I L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 927 ----ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRF 981
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 982 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1041
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1042 CTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba livia]
Length = 1168
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 790 MNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 849
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 850 PGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEG 909
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 910 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 965
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 966 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1018
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1019 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1064
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1065 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1124
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1125 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1165
>gi|338970356|gb|AEJ33659.1| RNA polymerase subunit B' [Natronoarchaeum mannanilyticum]
Length = 610
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 133/294 (45%), Gaps = 42/294 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 327 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 382
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ + G R G
Sbjct: 383 --APQEDM-PFTQEGVVPDLIVNPHALPSRMTVGHIL----EMIGGKVGSLEGRRVDGTP 435
Query: 179 FI--FKHYFLFCL----FECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F +H L F+ I + + + + IF FYQ+ HM +K+ R
Sbjct: 436 FTGEDEHELRGSLEEHGFKSSGKEIMYSGVTGEKIEAEIFVGTIFYQKLYHMVSNKLHAR 495
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 496 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREFIHVCGQC 555
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V NV Q+ V YC C+ DI + + Y KLL E+ ++GI + +
Sbjct: 556 GMSAVENVEQQRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 605
>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
Length = 1174
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 795 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRTTCQGMRNALYDKLDDDGIIA 854
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 855 PGIRVSGDDVVIGKTITLPENDDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 914
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 915 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 970
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G G
Sbjct: 971 IPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYHLRG 1023
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1024 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1069
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1070 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1129
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1130 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1170
>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Oryzias latipes]
Length = 1120
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 163/404 (40%), Gaps = 102/404 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K ++ +P+ DD L
Sbjct: 742 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIA 801
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 802 PGVRVSGEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 861
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 862 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 917
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + VS LL+ G G
Sbjct: 918 IPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKVSNLLSEYGYHLRG 970
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 971 NEVLYNGFTGRKL--------------TSQIFIGPTYYQRLKHMVDDKIHSRARGPVQIL 1016
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1017 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANT 1076
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
Y CR C + I +PY KLL QEL SM I + T
Sbjct: 1077 RTHTYECRGCRNKTQISLIRMPYACKLLFQEL-MSMSIAPRMMT 1119
>gi|149727186|ref|XP_001495511.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Equus caballus]
Length = 1135
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 160/397 (40%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F Q
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQKLDDDGLPFIGAQ 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F + I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G ++
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTERLYSG--------- 982
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 983 ----ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|301781941|ref|XP_002926382.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
[Ailuropoda melanoleuca]
gi|281347779|gb|EFB23363.1| hypothetical protein PANDA_016030 [Ailuropoda melanoleuca]
Length = 1135
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 160/398 (40%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F Q
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIGAQ 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F + I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + +LL G G ++
Sbjct: 936 KSAALHGLCHDATPFTFSEENSALE----YFGELLKAAGYNFYGTERLYSG--------- 982
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
I+ I L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 983 ----ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
Length = 1175
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 165/402 (41%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D + ++ +P+ DD +
Sbjct: 797 MNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 856
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPDNDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVAN-----VIQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N I +
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYAIHVCNFCGLIAIANL 1131
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFECKGCKNKTQISQVRLPYAAKLLFQEL-MSMSIAPRL 1172
>gi|440910777|gb|ELR60535.1| DNA-directed RNA polymerase I subunit RPA2 [Bos grunniens mutus]
Length = 1135
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 155/396 (39%), Gaps = 90/396 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F Q
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSERIKQGDDSLVFGVKPGDPRVLQKLDDDGLPFIGAQ 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G + K E +V + + SND G F V I ++ + +
Sbjct: 819 LKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCI--TMRVPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 937 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE---RLYSGISGLELE 989
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 990 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYNC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
+CN +D I ++PY + EL+ +M I +K D
Sbjct: 1099 ALCNRSDTIDTISLPYVFRYFVAELA-AMNIKVKLD 1133
>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
Length = 1176
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------------- 120
F + +R V +GDKF+S HGQKG G
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 973
Query: 121 ---EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKSCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|406863176|gb|EKD16224.1| DNA-directed RNA polymerase III polypeptide [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1214
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 127/286 (44%), Gaps = 60/286 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
KV+ + ND V RQ+ LGDKFSS HGQKGV+G + E P
Sbjct: 945 KVMTTQNDRDDTIIKVQTRQT----RRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGV 1000
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
++LE GK G +G + Y T F GG +
Sbjct: 1001 CPDIIMNPHGFPSRMTVGKMLELLSGKAGVLNGTLEYGTAF----GGSNVDD-------- 1048
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ I +N G ++ K + + P+ + IF +YQ+ HM +DK+
Sbjct: 1049 MGAILIKN-GFSYSGKDFVTSGITGEPLP---------AYIFFGPIYYQKLKHMVQDKMH 1098
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--- 283
R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A+ +
Sbjct: 1099 SRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHEVDICE 1158
Query: 284 --RVVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
++G +C+ C S + K +PY AKLL QE+ SM + ++
Sbjct: 1159 TCGLMGYQGWCQTCKSTRGVTKMTMPYAAKLLVQEM-LSMNVLVRL 1203
>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
Length = 1150
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS ++A D + ++ +P+ DD +
Sbjct: 772 MNASAVERGFFRSVFFRAYKDAESKRIGDQEEQFEKPTRTTCQGMRNALYDKLDDDGIIS 831
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 832 PGIRVSGDDVVIGKTITLPDTEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 891
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 892 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 947
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 948 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1000
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1001 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1046
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1047 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1106
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1107 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1147
>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
Length = 1150
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N ++E G FRS Y++ D + ++ +P+ DD +
Sbjct: 772 LNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRNNCQGMRNAIYDKLDDDGIIA 831
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 832 PGLRVSGDDVVIGKTITLPETDDDLDGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEG 891
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 892 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGVQYRQEDMPFTCEGLTPDIIINPHA 947
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +SQLL G G
Sbjct: 948 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISQLLQDYGYHLRG 1000
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1001 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1046
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1047 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1106
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1107 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1147
>gi|349605432|gb|AEQ00671.1| DNA-directed RNA polymerase I subunit RPA2-like protein, partial
[Equus caballus]
Length = 386
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 162/397 (40%), Gaps = 93/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F Q
Sbjct: 11 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQKLDDDGLPFIGAQ 70
Query: 43 SKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHSA 101
+ GD + + K E +V + + SND G F + I ++ + +
Sbjct: 71 LQYGDPYYSYLNLNTGESLMYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPRNP 128
Query: 102 CLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKG 135
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 129 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 188
Query: 136 AC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
A GL ATPF + +E++ + + ++L G G ++
Sbjct: 189 AALHGLCHDATPF------IFSEENSALEYFGEMLKAAGYNFYGTERLYSG--------- 233
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 234 ----ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRF 288
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 289 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 348
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 349 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 384
>gi|359321639|ref|XP_003639649.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
[Canis lupus familiaris]
Length = 1079
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 162/399 (40%), Gaps = 94/399 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------KIQSKSGD---IVIG 51
+N+AS E G YK+E D+ K + DD L FG +I K D IG
Sbjct: 703 VNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIG 760
Query: 52 KYAEIGADHSIKL------------KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMV 98
+ G + L K E +V + + SND G F V I ++ +
Sbjct: 761 ARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNGRFKCVCI--TMRVP 818
Query: 99 HSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAAL 132
+ +GDKF+S HGQKG+L L E P L+E+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMA 878
Query: 133 GKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK A GL ATPF S E + +LL G G ++
Sbjct: 879 GKSAALHGLCHDATPFTFSEENSALE----YFGELLKAAGYNFYGTERLYSG-------- 926
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
I+ I L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 927 -----ISGIEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIR 980
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 981 FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1040
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1041 NCTLCDRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
Length = 1150
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D + ++ +P+ DD +
Sbjct: 772 MNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 831
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 832 PGIRVSGDDVVIGKTITLPDNEDELEGSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 891
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 892 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 947
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 948 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1000
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1001 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPLQIL 1046
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1047 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1106
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1107 RSNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1147
>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
Length = 1150
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS Y++ D + ++ +P+ DD +
Sbjct: 772 MNASAVERGFFRSIFYRSYKDQESKRIGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIA 831
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+++E G+V +V+++ N +G
Sbjct: 832 PGVRVSGDDVIIGKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEG 891
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F+ + +R V +GDKF+S HGQKG G E P
Sbjct: 892 YKFSKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIVINPHA 947
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 948 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISSLLQEYGYHLRG 1000
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1001 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1046
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1047 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1106
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1107 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1147
>gi|367054822|ref|XP_003657789.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
gi|347005055|gb|AEO71453.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
Length = 1048
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 134/294 (45%), Gaps = 36/294 (12%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
+ + + + KV++S+ + V RQ+ LGDKFSS HGQKGV+G +
Sbjct: 765 PVNYRTPDPAYIDKVMVSNTEKDTAIIKVQTRQT----RRPELGDKFSSRHGQKGVVGII 820
Query: 121 ---EQTP----AQLLEAALGKGACDGLMSYATPFATSTG--GVITEQHQ-----SFVSQL 166
E P + + + M+ F TG V+ + +F S
Sbjct: 821 VDQEDMPFSDSGVVPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAGRRDYGFGDAFRSHP 880
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
+ +G G ++ K YF + P + + +F +YQ+ HM +DK
Sbjct: 881 VEEMGRVLVEHGFSWEGKDYFTSGITGDPHE---------AYLFNGPIYYQRLKHMVQDK 931
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ- 283
+ R++G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A +
Sbjct: 932 MHSRSSGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMYSSDATRVDI 991
Query: 284 ----RVVG-GPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQLS 331
++G YC+ C S + + +PY AKLL QEL S ++G+ ++ + Q
Sbjct: 992 CEWCGLLGYKGYCQTCKSTSQVTQMTMPYAAKLLVQELISMNVGVRIELEDQFP 1045
>gi|86451149|gb|ABC96797.1| RNA polymerase II [Alstonia scholaris]
Length = 210
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 105/234 (44%), Gaps = 53/234 (22%)
Query: 67 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQT 123
+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G E
Sbjct: 1 SENGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTIGMTYTQEDM 56
Query: 124 P-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQH 159
P QL+E +GK A G ATPF T
Sbjct: 57 PFTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT-------- 108
Query: 160 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
+S+ L+ G + G ++ + L + IF T+YQ+ H
Sbjct: 109 VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGPTYYQRLKH 154
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
M +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 155 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 208
>gi|338713977|ref|XP_003362990.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
caballus]
Length = 924
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 160/398 (40%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F Q
Sbjct: 548 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQKLDDDGLPFIGAQ 607
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F + I ++ +
Sbjct: 608 LQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPR 664
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 665 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 724
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G ++
Sbjct: 725 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTERLYSG--------- 771
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 772 ----ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRF 826
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 827 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 886
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 887 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 923
>gi|338713979|ref|XP_003362991.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
caballus]
Length = 1079
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 160/398 (40%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D ++ + DD L F Q
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQKLDDDGLPFIGAQ 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F + I ++ +
Sbjct: 763 LQYGDPYYS-YLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G ++
Sbjct: 880 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTERLYSG--------- 926
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 927 ----ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRF 981
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 982 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1041
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1042 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
Length = 1176
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 162/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D + ++ +P+ DD +
Sbjct: 797 MNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 973 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYHLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------ISAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
Length = 1175
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 110/405 (27%), Positives = 166/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D + ++ +P+ DD +
Sbjct: 797 MNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRLTCQGMRNALYDKLDDDGIIS 856
Query: 39 GKIQSKSGDIVIGKYAEI--------GA-------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + GA D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPENDDELEGATKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+F + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEIMFNGHTGRK--------------ISAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNFCGIIAIANM 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVKLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|156101694|ref|XP_001616540.1| DNA-directed RNA polymerase III subunit [Plasmodium vivax Sal-1]
gi|148805414|gb|EDL46813.1| DNA-directed RNA polymerase III subunit, putative [Plasmodium vivax]
Length = 1427
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 128/284 (45%), Gaps = 47/284 (16%)
Query: 60 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGF 119
+ +K K V K++ + N +G + +RQ+ LGDKFSS HGQKGV+G
Sbjct: 1150 NEVKYKSVYPSYVDKIIFTENAEGLKIYKIIMRQT----RLPELGDKFSSRHGQKGVVGL 1205
Query: 120 L-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
L Q E+ G C L+ F + + V +LL + ++++ +
Sbjct: 1206 LVNQEDMPFTES----GICPDLIMNPHGFPS----------RMTVGKLLELVASKSAVLD 1251
Query: 179 FIFKHYFLFCLFECPMDWIA-------FICLVRSLIFTWIT-------------FYQQFI 218
FK+ +F P + +A F C + L+++ +T +YQ+
Sbjct: 1252 GEFKYGSIFS--GTPFEEMASILFKYGFNCSCKELLYSGLTGEPLETYIFMGPIYYQKLK 1309
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK-CKN 277
HM +DK+ R G Q LT +P R + GG+ GEM+ DCLIA+G S L ERL +
Sbjct: 1310 HMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSD 1369
Query: 278 VANV-IQRVVG----GPYCRICNSADDIIKANVPYGAKLLSQEL 316
V +V I G YC C D +PY KLL QEL
Sbjct: 1370 VCDVYICEDCGMMGYDTYCTFCQKCDKNALVKMPYACKLLFQEL 1413
>gi|336476452|ref|YP_004615593.1| DNA-directed RNA polymerase subunit B [Methanosalsum zhilinae DSM
4017]
gi|335929833|gb|AEH60374.1| DNA-directed RNA polymerase subunit B [Methanosalsum zhilinae DSM
4017]
Length = 604
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 130/292 (44%), Gaps = 36/292 (12%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
+ +I ++ E+G+V ++L+ + +G A V IR +GDKF+S HGQKGV+G
Sbjct: 319 ESAITMRSNEKGIVDNIILTESVNGTRLAKVKIRDQ----RIPEIGDKFASRHGQKGVIG 374
Query: 119 FLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
+ P Q + D +++ +A P + G V+ + ++ + G R +
Sbjct: 375 LI--VPYQDMPFTENGIVPDLVINPHAIPSRMTVGHVL----EMIGGKVASMEGRRINAT 428
Query: 178 TF-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
F + KH F E D + +++ IF + YQ+ HM K+
Sbjct: 429 AFSGENEEDLRMGLKKHGFSHSGKEVFFDGVTG-KKIQADIFVGVILYQKLHHMVASKIH 487
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER----------LKCK 276
R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L ER L C
Sbjct: 488 ARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMALKERLLDESDKVVELVCS 547
Query: 277 NVANV--IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
N + R YC C S DI + Y KLL E+ S+G+ +
Sbjct: 548 NCGMIATFDRKRNIRYCSNCGSETDIYPVEMSYAFKLLLDEIK-SLGVAPRM 598
>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
Length = 1175
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D + ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTMTLPENDDELDGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-----------TP-------- 124
F + +R V +GDKF+S HGQKG G + TP
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDQYRIHVCNFCGLIAIANM 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|83282218|ref|XP_729674.1| DNA-directed RNA polymerase, subunit beta [Plasmodium yoelii yoelii
17XNL]
gi|23488130|gb|EAA21239.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
yoelii yoelii]
Length = 1323
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 131/321 (40%), Gaps = 73/321 (22%)
Query: 44 KSGDIVIGKYAEIGA-DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFA 87
K G + + KY+ I DH +K K V K++ + N +G
Sbjct: 1014 KEGQVYVNKYSPINVKDHVKDMSKLDLNDFKLSEVKYKSVYPSYVDKIIFTENGEGLKIY 1073
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATP 146
+ +RQS LGDKFSS HGQKGV+G L Q E+ G C L+
Sbjct: 1074 KIIMRQS----RLPELGDKFSSRHGQKGVVGLLVNQEDMPFTES----GICPDLIMNPHG 1125
Query: 147 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLF----------CLFECPMDW 196
F + V +LL + ++++ + +K+ +F LF +W
Sbjct: 1126 FPSRMT----------VGKLLELVSSKSAVLDGEYKYGSIFSGTPFEEAAEVLFRYGFNW 1175
Query: 197 IAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
L + + IF +YQ+ HM +DK+ R+ G Q LT +P R + G
Sbjct: 1176 SCKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARSRGPRQLLTRQPTEGRSKEG 1235
Query: 249 GIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPY-------------CRICN 295
G+ GEM+ DCLIA+G S L ERL ++ V Y C C
Sbjct: 1236 GLRLGEMERDCLIAYGVSNLLLERL-------MLSSDVCDAYICEDCGMMGYDSCCTFCK 1288
Query: 296 SADDIIKANVPYGAKLLSQEL 316
D + +PY KLL QEL
Sbjct: 1289 KYDKNVVVKMPYACKLLFQEL 1309
>gi|68076367|ref|XP_680103.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500986|emb|CAH95536.1| hypothetical protein PB000108.01.0 [Plasmodium berghei]
Length = 446
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 147/348 (42%), Gaps = 68/348 (19%)
Query: 14 ESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGA-DH------------ 60
E K ++++ + S +D +++ G + K G + + KY+ I DH
Sbjct: 108 EDPKKTINSELKKYHSLDADGVVSIGYLL-KEGQVYVNKYSPINVKDHVKDISKLDLNDF 166
Query: 61 ---SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 117
+K K V K++ + N +G + +RQS LGDKFSS HGQKGV+
Sbjct: 167 KLSEVKYKSVYPSYVDKIIFTENGEGLKIYKIIMRQS----RLPELGDKFSSRHGQKGVV 222
Query: 118 GFL-EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
G L Q E+ G C L+ F + V +LL + ++++
Sbjct: 223 GLLVNQEDMPFTES----GICPDLIMNPHGFPSRMT----------VGKLLELVSSKSAV 268
Query: 177 ITFIFKHYFLF----------CLFECPMDWIAFICL--------VRSLIFTWITFYQQFI 218
+ +K+ +F LF +W L + + IF +YQ+
Sbjct: 269 LDGEYKYGSIFSGTPFEEAAEVLFRYGFNWSCKELLYSGLTGEPLETYIFMGPIYYQKLK 328
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK---- 274
HM +DK+ R+ G Q LT +P R + GG+ GEM+ DCLIA+G S L ERL
Sbjct: 329 HMVQDKIHARSRGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSD 388
Query: 275 ------CKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
C++ + + C C D + +PY KLL QEL
Sbjct: 389 VCDTYICEDCGMMGYDLC----CTFCKKYDKNVVVKMPYACKLLFQEL 432
>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
Length = 1173
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 132/307 (42%), Gaps = 66/307 (21%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 108
V KY + D S L+ +E G+V +V+L+ N +G F + +R V +GDKF+
Sbjct: 883 VTKKYTK--RDASTFLRRSETGVVDQVMLTLNAEGYKFCKIRVRS----VRIPQIGDKFA 936
Query: 109 SMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK-GACDGLM 141
S HGQKG G E P L+E GK A G +
Sbjct: 937 SRHGQKGTCGIQYRQEDMPFTSEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEI 996
Query: 142 SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC 201
ATPF + + +S LL G G ++ Y
Sbjct: 997 GDATPFNDAV-------NVQKISHLLQEYGYNLRGNEIMYNGYTGRK------------- 1036
Query: 202 LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLI 261
+ + IF T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC I
Sbjct: 1037 -INAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPLEGRARDGGLRFGEMERDCQI 1095
Query: 262 AHGASGNLHERLKCK------NVAN-----VIQRVVGGPY-CRICNSADDIIKANVPYGA 309
+HGA+ L ERL +V N VI + + C+ C + I + ++PY +
Sbjct: 1096 SHGAAQFLRERLFTVSDPYRIHVCNLCGLIVIANLRNNTFECKSCKNKTQISQVHLPYAS 1155
Query: 310 KLLSQEL 316
KLL QEL
Sbjct: 1156 KLLMQEL 1162
>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
[Saccoglossus kowalevskii]
Length = 1175
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDI------QVKSRPS------------DDMLNFGKIQ 42
MN +++E G FRS Y++ D + +V +P D + + G I
Sbjct: 796 MNLSAVERGFFRSVFYRSYRDQESKKGLDQEEVFEKPDRESCQGMRMAVYDKLDDDGIIA 855
Query: 43 SKS----GDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
S D++IGK + D S ++ TE G+V +V++S N +G
Sbjct: 856 PGSRVSGDDVLIGKTVTLPENDDELEGTTRRFTKRDSSTFMRRTETGIVDQVMVSINQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + IR V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIKIRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTAEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTV-------NVQKISNLLHEYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGRKLG--------------TQIFIGPTYYQRLKHMVDDKIHSRARGPLQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCNLCGLIAIANL 1130
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
CR C + I + +PY KLL QEL SM I +
Sbjct: 1131 RNNTFE---CRGCKNKTQISQIRLPYACKLLFQEL-MSMSIAPRM 1171
>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
Length = 1142
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 147/332 (44%), Gaps = 73/332 (21%)
Query: 41 IQSKSGDIVIGKYAEIGADHSI----KLKHTERGLVLK---------VLLSSNDDGKNFA 87
++ SG I I K A S+ + ++ E +V + V++S +++ +
Sbjct: 830 VKVNSGQIYINKSVPTNASDSVLTSTQSQYKETPVVYRSPVPSHIDQVMMSVSENDQALI 889
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------------- 124
V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 890 KVLLRQN----RRPELGDKFSSRHGQKGVCGIIVNHEDMPFNDEGISPDIIMNPHGFPSR 945
Query: 125 ---AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI 180
+++E GK G +G + Y T F GG E +SQ+L G SG +
Sbjct: 946 MTVGKMIELVSGKAGVLNGSLEYGTCF----GGSKLED----MSQILVENGYNYSGKDML 997
Query: 181 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 240
+ CL ++ IF +YQ+ HM DK+ R G LT +P
Sbjct: 998 YSGVTGECL--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQP 1043
Query: 241 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRIC 294
R R GG+ GEM+ DC+IA+GAS L ERL + A +V + ++G +C C
Sbjct: 1044 TEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCHKCGLMGYSGWCTTC 1103
Query: 295 NSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
SA+ I+K +PY AKLL QEL +M I +
Sbjct: 1104 KSAEFIVKMTIPYAAKLLFQEL-LAMNIAPRL 1134
>gi|169597943|ref|XP_001792395.1| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
gi|160707624|gb|EAT91415.2| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
Length = 1443
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 130/303 (42%), Gaps = 66/303 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D K K + + KV ++ N+ G + RQ+ LGDKFSS HGQKG G
Sbjct: 1160 DKPEKYKLPDCSYIDKVCITENEAGTTLIKILNRQT----RRPELGDKFSSRHGQKGTTG 1215
Query: 119 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ Q T +++E GK G +G + Y T F
Sbjct: 1216 LIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFG--- 1272
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
G + + VS+ + G SGIT ++ F F
Sbjct: 1273 GSRVEDMADILVSKGFSYTGKDYLTSGITGEAHQFYTF--------------------FG 1312
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
I +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1313 PI-YYQKLKHMVQDKMHARARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLL 1371
Query: 270 HERLKCKNVANVI-------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMG 321
ERL + A+ + Q G YC++C S + + +PY AKLL QEL S ++
Sbjct: 1372 LERLMISSDAHNVDVCEKCGQMGYSG-YCKLCESEKAVRRITMPYAAKLLIQELGSMNVK 1430
Query: 322 ITL 324
+T+
Sbjct: 1431 VTI 1433
>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
5348]
gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Metallosphaera sedula DSM 5348]
Length = 1124
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 137/321 (42%), Gaps = 42/321 (13%)
Query: 40 KIQSKSGDIVIGK---------YAEIGADH-----SIKLKHTERGLVLKVLLSSNDDGKN 85
++ K GD++IGK + E+ D SI +H ERG V VL++ +G
Sbjct: 798 EVDVKGGDVLIGKVSPPRFLQEFKELSPDQAKRDTSIITRHGERGTVDLVLVTETSEGNK 857
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYA 144
V +R + +GDKF++ HGQKGV+G L Q + L L +A
Sbjct: 858 LVKVRVRD----LRIPEIGDKFATRHGQKGVIGMLIPQVDMPYTTSGLVPDII--LNPHA 911
Query: 145 TPFATSTGGVITEQHQSFVSQLLNCIGAR---NSGITFI----FKHYFLFCLFECPMDWI 197
P + G ++ FV+ N I A N+ I I +H +L E D
Sbjct: 912 LPSRMTVGQIMEAIAGKFVAATGNPIDATPFYNTPIEEIQRKLLEHGYLSDGSEVVYDGR 971
Query: 198 AFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 257
L ++F I +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+
Sbjct: 972 TGEKLKGRILFG-IVYYQKLHHMVADKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMER 1030
Query: 258 DCLIAHGASGNLHERL----------KCKNVANV--IQRVVGGPYCRICNSADDIIKANV 305
DCLI +GA+ + +RL C+ V R C I + +
Sbjct: 1031 DCLIGYGAAMLIKDRLLDNSDRATVYVCEQCGYVGWYDRTKNKYICPIHGDKTTLYPVVI 1090
Query: 306 PYGAKLLSQELSFSMGITLKF 326
Y KLL QEL SM I K
Sbjct: 1091 SYAFKLLLQEL-MSMVIAPKL 1110
>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
Length = 1175
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 163/408 (39%), Gaps = 114/408 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK---------SRPS----------------DDM 35
MN +++E G FRS +++ KD + K RP+ DD
Sbjct: 797 MNASAVERGFFRSVFFRS---YKDAESKRFCDQEEQFERPTRNTCQGMRNAIYDKLDDDG 853
Query: 36 LNFGKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSN 80
+ ++ D+VIGK + D S L+++E G+V +V+++ N
Sbjct: 854 IIAPGVRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLN 913
Query: 81 DDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------- 124
+G F + +R V +GDKF+S HGQKG G E P
Sbjct: 914 SEGYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 969
Query: 125 ----------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGAR 173
L+E GK A G + ATPF + + +S LL G +
Sbjct: 970 PHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQ 1022
Query: 174 NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
G ++ + + + IF T+YQ+ HM +DK+ R G
Sbjct: 1023 LRGNEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPL 1068
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NV 278
Q L +P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +
Sbjct: 1069 QILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAI 1128
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
AN+ C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1129 ANLRNSTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|170291136|ref|YP_001737952.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175216|gb|ACB08269.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 1121
Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats.
Identities = 88/331 (26%), Positives = 142/331 (42%), Gaps = 85/331 (25%)
Query: 44 KSGDIVIGKYA--------EIGA----------DHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ GD++IGK + +G+ D SI ++ ERG+V VLL++ G+
Sbjct: 803 EGGDVLIGKTSPPRFSPELTVGSGYPQYTFERRDTSISMRAWERGVVTDVLLATKTGGEK 862
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------- 120
V++R++ LGDKF++ HGQKGVLG +
Sbjct: 863 LVRVNVRET----RPPELGDKFATRHGQKGVLGMIYRHEDMPFTAQGIIPDIVLDPHTIP 918
Query: 121 -EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
T QL E GK GA +G TPF ++E + + L+ +G SG
Sbjct: 919 SRMTIGQLYEIIAGKVGALEGRFVDGTPF-------MSEPVEDLMEALVK-LGFEYSGEE 970
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ ++++ +F I++YQ+ HM DK+ R G Q LT
Sbjct: 971 IMYDGRTGR--------------MIKAPVFIGISYYQRLKHMVRDKIHARARGQMQLLTR 1016
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+PV R R GG+ GEM+ + LI+HGA+ + +R +C +A Q+
Sbjct: 1017 QPVEGRARGGGLRLGEMEGEVLISHGAASVIRDRYIDQSDKTIIYVCKECGTIAFFNQK- 1075
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+C C S+ ++ Y +KL +EL
Sbjct: 1076 TNEFFCPRCQSSVEVKPLITSYASKLFIEEL 1106
>gi|340344216|ref|ZP_08667348.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519357|gb|EGP93080.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 1115
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 145/323 (44%), Gaps = 76/323 (23%)
Query: 46 GDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 90
GDI+IGK Y E + D SI ++ +E G+V V+++ +++G +
Sbjct: 802 GDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIR 861
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFAT 149
+R + +GDKF+S HGQKGVLG L + A+ L + D L++ +A P
Sbjct: 862 VRD----MRIPEIGDKFASRHGQKGVLGILAK--AEDLPYTADGISPDVLINPHAFPSRM 915
Query: 150 STGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FKHYFLFCLFEC-- 192
+ G + +S + G++ G F+ FK+ +++
Sbjct: 916 TVGMFM----ESICGKAAALRGSQFDGSAFVGEKMDEVKPVMDAAGFKYSGKETMYDGRT 971
Query: 193 ----PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
P+D +F + +YQ+ HM DK+ R G Q LT +P R R G
Sbjct: 972 GKSFPVD-----------VFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGG 1020
Query: 249 GIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRI 293
G+ FGEM+ DCLIA+GAS L +RL +C VA +V QR CR+
Sbjct: 1021 GLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---ICRV 1077
Query: 294 CNSADDIIKANVPYGAKLLSQEL 316
C + +V Y KLL QE+
Sbjct: 1078 CGDKAKVSSVSVAYAFKLLLQEM 1100
>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
Length = 1176
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 162/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
Length = 1123
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V + DD +
Sbjct: 745 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 804
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 805 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEG 864
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------------- 120
F + +R V +GDKF+S HGQKG G
Sbjct: 865 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 920
Query: 121 ---EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T L+E GK G+ G + ATPF + + +S L G G
Sbjct: 921 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 973
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 974 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1019
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1020 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1079
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1080 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1120
>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
Length = 1175
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 131/310 (42%), Gaps = 71/310 (22%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+++E G+V +V+L+ N +G F + +R V +GDKF+S HGQKG G
Sbjct: 892 DASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCG 947
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
E P L+E GK A G + ATPF +
Sbjct: 948 IQYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV 1007
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ +S LL G + G ++ + + + IF
Sbjct: 1008 -------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK--------------INAQIFIGP 1046
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IAHGA+ L E
Sbjct: 1047 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRE 1106
Query: 272 RL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C +AN+ C+ C + I + +PY AKLL QEL
Sbjct: 1107 RLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL 1163
Query: 317 SFSMGITLKF 326
SM I +
Sbjct: 1164 -MSMNIAPRL 1172
>gi|50310217|ref|XP_455128.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644264|emb|CAG97835.1| KLLA0F01078p [Kluyveromyces lactis]
Length = 1142
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 148/332 (44%), Gaps = 73/332 (21%)
Query: 41 IQSKSGDIVIGKYAEIGADHSI----KLKHTERGLVLK---------VLLSSNDDGKNFA 87
++ +SG I + K A SI + ++ E +V + V++S +D+ +
Sbjct: 830 MKVESGQIYVNKSVPTNASDSILTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQALI 889
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--------------------------E 121
V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 890 KVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSR 945
Query: 122 QTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI 180
T +++E GK G +G + Y T F GG E +S++L G SG +
Sbjct: 946 MTVGKMIELISGKAGVLNGTLEYGTCF----GGSKLED----MSKILVDNGFNYSGKDML 997
Query: 181 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 240
+ CL ++ IF +YQ+ HM DK+ R G LT +P
Sbjct: 998 YSGITGECL--------------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQP 1043
Query: 241 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRIC 294
R R GG+ GEM+ DC+IA+GAS L ERL + A +V ++ ++G +C C
Sbjct: 1044 TEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKCGLMGYSGWCTSC 1103
Query: 295 NSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+A+ ++K +PY AKLL QEL +M I +
Sbjct: 1104 KTAEHVVKMTIPYAAKLLFQEL-LAMNIAPRL 1134
>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
Length = 1174
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 165/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D++ ++ +P+ DD +
Sbjct: 796 MNASAVERGFFRSVFFRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 856 PGLRVSGDDVVIGKTITLPENEDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 971
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 972 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1071 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANM 1130
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1131 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1171
>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
Length = 1176
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 162/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
Length = 1176
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V +P+ DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPNRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------------- 120
F + +R V +GDKF+S HGQKG G
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 973
Query: 121 ---EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|410670213|ref|YP_006922584.1| DNA-directed RNA polymerase, subunit B' [Methanolobus psychrophilus
R15]
gi|409169341|gb|AFV23216.1| DNA-directed RNA polymerase, subunit B' [Methanolobus psychrophilus
R15]
Length = 604
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 38/291 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
+I ++ E+G+V VLL+++ +G A V IR +GDKF+S HGQKGV+G +
Sbjct: 321 AITMRSNEKGVVDTVLLTASINGTRLAKVKIRDQ----RVPEIGDKFASRHGQKGVIGLI 376
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G V+ + ++ + G R + F
Sbjct: 377 --VPYEDMPFTHTGMVPDLVINPHAIPSRMTVGHVL----EMIGGKIGSMEGRRINATAF 430
Query: 180 -----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
+ H F E D + ++R+ +F + YQ+ HM K+ R
Sbjct: 431 SGEYEDDLRAALKSHGFAHTGKEVFYDGVTG-QMIRADVFVGVILYQKLHHMVASKIHAR 489
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGG 288
+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L ERL V++ V G
Sbjct: 490 SRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMTLKERL-LDESDKVVELVCGH 548
Query: 289 -------------PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
YC C + DI + Y KLL E+ S+G+ +
Sbjct: 549 CGMIATFDRKRNIRYCANCGAETDIHPVEMSYAFKLLLDEIK-SLGVAPRL 598
>gi|86451157|gb|ABC96801.1| RNA polymerase II [Calycophyllum candidissimum]
Length = 214
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 105/234 (44%), Gaps = 53/234 (22%)
Query: 67 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQT 123
+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G E
Sbjct: 1 SETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDM 56
Query: 124 P-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQH 159
P QL+E +GK A G ATPF T
Sbjct: 57 PFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT-------- 108
Query: 160 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
+S+ L+ G + G ++ + L + IF T+YQ+ H
Sbjct: 109 VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGPTYYQRLKH 154
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
M +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 155 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 208
>gi|326523005|dbj|BAJ88548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 263
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 117/269 (43%), Gaps = 68/269 (25%)
Query: 103 LGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGA 136
+GDKFSS HGQKG +G E P QL+E +GK A
Sbjct: 11 IGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 70
Query: 137 CD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 195
G ATPF T +S+ L+ G + G ++ + L
Sbjct: 71 AHMGKEGDATPFTDVT--------VDNISKALHKCGYQMRGFETMYNGHTGRKLT----- 117
Query: 196 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 255
++IF T+YQ+ HM +DK+ R G Q LT +P R R GG+ FGEM
Sbjct: 118 ---------AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 168
Query: 256 KCDCLIAHGASGNLHERL-------------KCK--NVANVIQRVVGGPYCRICNSADDI 300
+ DC+IAHGA+ L ERL KC +AN+ + CR C + DI
Sbjct: 169 ERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSF---ECRGCKNKTDI 225
Query: 301 IKANVPYGAKLLSQELSFSMGITLKFDTQ 329
++ ++PY KLL QEL +M I + T
Sbjct: 226 VQVHIPYACKLLFQEL-MAMAIAPRMLTH 253
>gi|387191409|gb|AFJ68613.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
gaditana CCMP526]
gi|422292684|gb|EKU19986.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
gaditana CCMP526]
Length = 1197
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 127/289 (43%), Gaps = 57/289 (19%)
Query: 72 VLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---- 124
V +VL++SN+ G VS+RQ +GDKFSS HGQKGV G + E P
Sbjct: 927 VDQVLITSNEGGDLLVKVSVRQ----CRRPEVGDKFSSRHGQKGVCGIIVAQEDMPFNDD 982
Query: 125 -------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVS 164
+L+E GK + G +Y T F G
Sbjct: 983 GICPDLIMNPHGFPSRMTVGKLIEFVAGKASVMIGRQAYGTAFGEDFGSA---------D 1033
Query: 165 QLLNCIGAR-NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSED 223
+++ C GA +G +++ K P+ + IF FYQ+ HM D
Sbjct: 1034 RVVACSGALVENGFSYVGKEIITSGTSGEPL---------LTYIFQGPVFYQKLKHMVMD 1084
Query: 224 KVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---VAN 280
K+ R G LT +P R R GG+ GEM+ DCLI +GAS L ERL + A
Sbjct: 1085 KMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASSLLTERLMISSDAFTAT 1144
Query: 281 VIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
V +R ++G +C+ C S++ + +PY KLL QEL SM + K
Sbjct: 1145 VCERCGLLGYAGWCQSCRSSERMADIRLPYACKLLFQELQ-SMNVIPKL 1192
>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
Length = 1175
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 162/395 (41%), Gaps = 88/395 (22%)
Query: 1 MNQASLECGVFRS---ESYK-AEVDNKDIQVK--SRPS----------------DDMLNF 38
MN +++E G FRS SYK AE Q + +PS DD +
Sbjct: 797 MNASAVERGFFRSVFFRSYKDAESKGMGDQEEQFEKPSRTTCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGL 140
F + +R V +GDKF+S HGQKG G E P C+GL
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPF----------TCEGL 962
Query: 141 MS------YATPFATSTGGVITEQHQSFVSQLLNCIGARNS--------GITFIFKHYFL 186
+A P + G +I E Q VS IG I+ + + Y
Sbjct: 963 TPDIIINPHAIPSRMTIGHLI-ECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGY 1021
Query: 187 FCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 246
M + + IF T+YQ+ HM +DK+ R G Q L +P+ R R
Sbjct: 1022 HLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1081
Query: 247 FGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPYC 291
GG+ FGEM+ DC IAHGA+ L ERL C +AN+ C
Sbjct: 1082 DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRVHVCNFCGIIAIANLRNNTFE---C 1138
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ C + I + +PY AKLL QEL SM I +
Sbjct: 1139 KGCKNKTQISQIRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
Length = 1174
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 132/307 (42%), Gaps = 65/307 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ ++ +E G++ +V+++ N +G F + +R V + +GDKF+S HGQKG G
Sbjct: 891 DCSVFMRRSETGIIDQVMVTINQEGYKFCKIRVR----TVKTPQIGDKFASRHGQKGTCG 946
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
E P L+E GK A G + ATPF +
Sbjct: 947 IRYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAV 1006
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ +S LL G G +F + L + IF
Sbjct: 1007 -------NVRKISDLLQDYGYHLRGNEVLFNGHTGRKL--------------NAQIFIGP 1045
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IAHGA+ L E
Sbjct: 1046 TYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKE 1105
Query: 272 RL------KCKNVANV-----IQRVVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFS 319
RL +V N+ I + + CR C + I + +PY KLL QEL S
Sbjct: 1106 RLFEISDPYRVHVCNICGLIAIANLRNNTFECRGCKNKTQISQVRMPYACKLLFQEL-MS 1164
Query: 320 MGITLKF 326
M I +
Sbjct: 1165 MSIAPRM 1171
>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
Length = 1175
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V + DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------------- 120
F + +R V +GDKF+S HGQKG G
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 972
Query: 121 ---EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T L+E GK G+ G + ATPF + + +S L G G
Sbjct: 973 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
Length = 1123
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 166/407 (40%), Gaps = 108/407 (26%)
Query: 1 MNQASLECGVFRSESYKA--EVDNKDI----QVKSRPS----------------DDMLNF 38
+N +++E G FRS Y++ E ++K I + +PS DD +
Sbjct: 745 LNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIA 804
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D++IGK + D S L+++E G+V +V+L+ N +G
Sbjct: 805 PGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 864
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 865 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHA 920
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 921 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 973
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 974 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1019
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1020 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1079
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ C + I + +PY AKLL QEL +M I + T
Sbjct: 1080 RNNTFE---CKGCKNKTQISQIRLPYAAKLLFQEL-MAMNIAPRLMT 1122
>gi|86451163|gb|ABC96804.1| RNA polymerase II [Guettarda uruguensis]
Length = 213
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 105/234 (44%), Gaps = 53/234 (22%)
Query: 67 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQT 123
+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G E
Sbjct: 1 SETGIVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDM 56
Query: 124 P-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQH 159
P QL+E +GK A G ATPF T
Sbjct: 57 PFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT-------- 108
Query: 160 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
+S+ L+ G + G ++ + L + IF T+YQ+ H
Sbjct: 109 VDNISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGPTYYQRLKH 154
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
M +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 155 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 208
>gi|164661167|ref|XP_001731706.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
gi|159105607|gb|EDP44492.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
Length = 1131
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 122/288 (42%), Gaps = 59/288 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
+ K G + +VL+S D + IRQ+ LGDKFSS HGQKGV+G +
Sbjct: 855 LSYKSPVEGYIDQVLISDTDSDQTLVKSLIRQT----RRPELGDKFSSRHGQKGVIGLIV 910
Query: 121 -------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGV 154
T +++E GK G G Y T F GG
Sbjct: 911 PQADMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGKAGVLRGTQEYGTAF----GGS 966
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
E +S++L G G K Y + P++ + ++ +Y
Sbjct: 967 KVED----MSRILVEHGYHYGG-----KEYMTSGMTGEPLE---------AYVYFGPIYY 1008
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM DK+ R G LT +P R R GG+ GEM+ DCLI +GA+ L ERL
Sbjct: 1009 QKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLM 1068
Query: 275 CKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ A V+ ++G YC C S+ ++K VPY KLL QEL
Sbjct: 1069 VSSDAFVVNACEECGLLGYNGYCGYCKSSKHVVKLTVPYATKLLFQEL 1116
>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
Length = 1176
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------------- 120
F + +R V +GDKF+S HGQKG G
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 973
Query: 121 ---EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|149023254|gb|EDL80148.1| RNA polymerase 1-2 [Rattus norvegicus]
Length = 1135
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 158/399 (39%), Gaps = 94/399 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------KIQSK---SGDIVIG 51
+N+AS E G YK+E D+ K + DD L FG ++ K G IG
Sbjct: 759 VNKASWERGFAHGSVYKSEF--IDLSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIG 816
Query: 52 KYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMV 98
E G + + K E +V + + SND G F V + +V +
Sbjct: 817 AKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCV--TVRVP 874
Query: 99 HSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAAL 132
+ +GDKF+S HGQKG+L L E P L+E+
Sbjct: 875 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMA 934
Query: 133 GKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK A GL ATPF S E + ++L G G + Y E
Sbjct: 935 GKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGME 987
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 988 LEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIR 1036
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1037 FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1096
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1097 NCTVCGRSDSIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|13929088|ref|NP_113961.1| DNA-directed RNA polymerase I subunit RPA2 [Rattus norvegicus]
gi|3914801|sp|O54888.1|RPA2_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=A127; AltName:
Full=RPA135
gi|2739048|gb|AAB94600.1| RNA polymerase I 127 kDa subunit [Rattus norvegicus]
Length = 1135
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 158/399 (39%), Gaps = 94/399 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------KIQSK---SGDIVIG 51
+N+AS E G YK+E D+ K + DD L FG ++ K G IG
Sbjct: 759 VNKASWERGFAHGSVYKSEF--IDLSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIG 816
Query: 52 KYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMV 98
E G + + K E +V + + SND G F V + +V +
Sbjct: 817 AKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCV--TVRVP 874
Query: 99 HSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAAL 132
+ +GDKF+S HGQKG+L L E P L+E+
Sbjct: 875 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMA 934
Query: 133 GKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK A GL ATPF S E + ++L G G + Y E
Sbjct: 935 GKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGME 987
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 988 LEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIR 1036
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1037 FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1096
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1097 NCTVCGRSDSIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Megachile rotundata]
Length = 1175
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
Length = 1158
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 121/279 (43%), Gaps = 56/279 (20%)
Query: 72 VLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ--------- 122
V KVLL+S++ V IRQ+ +GDKFSS HGQKGV G + Q
Sbjct: 888 VDKVLLTSSEANHFLVKVLIRQT----RRPEIGDKFSSRHGQKGVCGTIRQQEDMPFNDQ 943
Query: 123 -----------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVS 164
T +++E GK G G +Y T F G
Sbjct: 944 GICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLTGRRAYGTAFGEKYGSA---------D 994
Query: 165 QLLNCIGAR-NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSED 223
+L+C +G + K Y + P++ IF +YQ+ HM D
Sbjct: 995 HVLDCSRELVKNGFNYAGKDYLTSGITGEPIE---------CYIFMGPIYYQKLKHMVMD 1045
Query: 224 KVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---VAN 280
K+ R G LT +P R R GG+ GEM+ DCLI +GAS L ERL + A+
Sbjct: 1046 KMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLMERLMLSSDAFSAD 1105
Query: 281 VIQ--RVVGGP-YCRICNSADDIIKANVPYGAKLLSQEL 316
V Q R++G +C+ C S + ++ +PY KLL QEL
Sbjct: 1106 VCQGCRMLGYEGWCQHCKSEEKVVSIRIPYACKLLFQEL 1144
>gi|343427664|emb|CBQ71191.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Sporisorium
reilianum SRZ2]
Length = 1170
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 121/282 (42%), Gaps = 63/282 (22%)
Query: 70 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ------- 122
G V +VL++ D + IRQ+ LGDKFSS HGQKGV+G + Q
Sbjct: 902 GYVDQVLITDTDSDQTLIKALIRQT----RRPELGDKFSSRHGQKGVIGLIVQQEDMPFT 957
Query: 123 -------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSF 162
T +++E GK G G + Y T F G + +
Sbjct: 958 DEGINPDIIMNPHGFPSRMTVGKMIELLSGKAGVVTGTLQYGTAFG---GSKVDDMSALL 1014
Query: 163 VSQLLNCIGARN--SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHM 220
V N G SGIT EC ++ +YQ+ HM
Sbjct: 1015 VEHGYNYAGKETLTSGITG--------QPLEC-------------YVYFGPIYYQRLKHM 1053
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVAN 280
+DK+ R G LT +P R R GG+ GEM+ DCLI +GA+ L ERL + A
Sbjct: 1054 VQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAF 1113
Query: 281 VI---QR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ QR ++G +C C+S+ +++ +PYG KL+ QEL
Sbjct: 1114 TVHACQRCGLMGYNGFCPYCSSSKHVVQLTIPYGTKLMLQEL 1155
>gi|432103058|gb|ELK30392.1| DNA-directed RNA polymerase I subunit RPA2 [Myotis davidii]
Length = 1137
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 164/398 (41%), Gaps = 94/398 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG-------KIQ--SKSGDIVIG 51
+N+AS E G YK+E D+ K + DD L FG +Q + G IG
Sbjct: 761 VNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFGVKPGDPRTVQKLDEDGLPFIG 818
Query: 52 KYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMV 98
+ G + + K E +V + + SND G F V I ++ +
Sbjct: 819 AQLQYGDPYYSYVNLNTGESSVMFYKSKENCIVDNIKVCSNDSGSGKFKCVCI--TMRIP 876
Query: 99 HSACLGDKFSSMHGQKGVLGFLEQT---------------------PAQ-----LLEAAL 132
+ +GDKF+S HGQKG+L L T P++ L+E+
Sbjct: 877 RNPTIGDKFASRHGQKGILSRLWPTEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMA 936
Query: 133 GKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK A GL ATPF S E + ++L G G ++
Sbjct: 937 GKSAALHGLCHDATPFTFSEENSALE----YFGEMLKAAGYNFYGTERLYSG-------- 984
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
I+ + L + IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 985 -----ISGVEL-EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIR 1038
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1039 FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1098
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1099 NCTVCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1135
>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
Length = 1176
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 164/406 (40%), Gaps = 110/406 (27%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI--------------------QVKSRPSDDMLN 37
MN +++E G FRS SYK + ++K I + + DD +
Sbjct: 797 MNASAVERGFFRSVFFRSYK-DAESKRICDQEEQFEKPTRTTCQGMRNAIYDKLDDDGII 855
Query: 38 FGKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDD 82
I+ D+VIGK + D S L+++E G+V +V+++ N +
Sbjct: 856 APGIRVSGDDVVIGKTITLPDNDDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSE 915
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 GYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPH 971
Query: 125 --------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E GK + + G + ATPF + + +S LL G +
Sbjct: 972 AIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLR 1024
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + + + IF T+YQ+ HM +DK+ R G Q
Sbjct: 1025 GNEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPLQI 1070
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVAN 280
L +P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1131 MRNSTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|118576748|ref|YP_876491.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
symbiosum A]
gi|118195269|gb|ABK78187.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
symbiosum A]
Length = 1115
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 139/314 (44%), Gaps = 58/314 (18%)
Query: 46 GDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 90
GDI+IGK Y E D SI ++ +E G+V V+++ +++G +
Sbjct: 802 GDILIGKTSPPRFMEEYKEFEPSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIR 861
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATS 150
+R + +GDKF++ HGQKGVLG L + L A G + +A P +
Sbjct: 862 VRD----MRVPEIGDKFAARHGQKGVLGILAKN-EDLPYTAEGVTPDVLINPHAFPSRMT 916
Query: 151 TGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL---- 206
G + +S + G + G F+ + + + E MD F + +
Sbjct: 917 VGMFM----ESITGKAAALRGTQFDGSAFVGEK--MEEVREV-MDTAGFKYSGKEIMYDG 969
Query: 207 ---------IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 257
+F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+
Sbjct: 970 RTGKAFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMER 1029
Query: 258 DCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDIIK 302
DCLIA+GAS L +RL +C VA +V QR CR+C +
Sbjct: 1030 DCLIAYGASMILKDRLLDESDKSDIYVCERCGLVAYHDVKQRKY---VCRVCGDKAKVSS 1086
Query: 303 ANVPYGAKLLSQEL 316
+V Y KLL QE+
Sbjct: 1087 VSVAYAFKLLLQEM 1100
>gi|195123595|ref|XP_002006289.1| GI20961 [Drosophila mojavensis]
gi|193911357|gb|EDW10224.1| GI20961 [Drosophila mojavensis]
Length = 1136
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K E + +V++S+N + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 861 ISYKGPEPSYIERVMVSANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIV 916
Query: 121 --EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGV 154
E P + LE GK G +G Y T F S
Sbjct: 917 DQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSKAAD 976
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
+ ++L+ G ++ K +F + P++ + I++ +Y
Sbjct: 977 VQ-------AELVR------HGFNYMGKDFFYSGITGAPLE---------AYIYSGPVYY 1014
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 1015 QKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 1074
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V R+ +C C S+ + K ++PY KLL QEL+ SM + K
Sbjct: 1075 ISSDAFEVDVCRTCGRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELT-SMNVVPKL 1131
>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6) [Pyrococcus
abyssi GE5]
gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi GE5]
Length = 1117
Score = 99.8 bits (247), Expect = 2e-18, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 154/349 (44%), Gaps = 69/349 (19%)
Query: 11 FRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAE--------IGA---- 58
+R E Y +D +D L F + + + D++IG+ + +GA
Sbjct: 780 YRGEKYYRHLD-----------EDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ 828
Query: 59 ---DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 115
+ S+ ++ +ERG+V KV+++ DG V++R + +GDKF+S HGQKG
Sbjct: 829 ERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRD----LRIPEIGDKFASRHGQKG 884
Query: 116 VLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
V+G + P + + D +++ + P + G ++ ++ ++ G R
Sbjct: 885 VIGLI--VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLL----EAIGGKVAALKGRRV 938
Query: 175 SGITFI---------------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
G FI FKH +++ + F + IF + +YQ+ H
Sbjct: 939 DGTAFIGEPEEKLRKELEELGFKHTGREIMYD-GITGKRF----EADIFVGVIYYQRLHH 993
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------ 273
M DK+ R+ G Q LT +P R R GG+ FGEM+ D L+ HGA+ L ERL
Sbjct: 994 MVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDK 1053
Query: 274 ----KCKNVANVI--QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
C+N ++ + YC +C + I K + Y KLL EL
Sbjct: 1054 TEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDEL 1102
>gi|91773159|ref|YP_565851.1| DNA-directed RNA polymerase subunit B' [Methanococcoides burtonii
DSM 6242]
gi|91712174|gb|ABE52101.1| DNA-directed RNA polymerase subunit B' [Methanococcoides burtonii
DSM 6242]
Length = 604
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 129/308 (41%), Gaps = 68/308 (22%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
+I ++ E+G+V V+L+ + +G A V IR +GDKF+S HGQKGV+G +
Sbjct: 321 AITMRSNEKGIVDTVILTESINGTRLAKVKIRDE----RIPEIGDKFASRHGQKGVIGLI 376
Query: 121 --------------------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGG 153
T A +LE GK G+ +G + T F+
Sbjct: 377 VPYHDMPFTELGMVPDLVINPHAIPSRMTVAHVLEMIGGKLGSLEGQRKWGTAFSGDMED 436
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
I + G +N G + K +FC D + +++ +F +
Sbjct: 437 GIRD-------------GLKNRGFSHTGKE--VFC------DGVTG-KKIQADVFVGVIL 474
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L ERL
Sbjct: 475 YQKLHHMVASKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMTLKERL 534
Query: 274 -------------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFS 319
+C VA R YC C + DI + Y KLL E+ S
Sbjct: 535 LDESDKVVELVCAQCGMVAT-FDRTRNIRYCSNCGAETDIHPVEMSYAFKLLLDEIKSLG 593
Query: 320 MGITLKFD 327
+ L+ D
Sbjct: 594 VAPRLRLD 601
>gi|345568411|gb|EGX51305.1| hypothetical protein AOL_s00054g375 [Arthrobotrys oligospora ATCC
24927]
Length = 1166
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 129/299 (43%), Gaps = 64/299 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D ++ K T+ + KV++S ++ + V RQ+ LGDKFSS HGQKGV G
Sbjct: 882 DAAMNYKLTDPAYIDKVMISCSESEQTIIKVLTRQT----RRPELGDKFSSRHGQKGVCG 937
Query: 119 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ Q T +++E GK G G + Y T F
Sbjct: 938 IIVQQEDMPFNDFGTCPDIIMNPHGFPSRMTVGKMIELLAGKAGVLSGNLQYGTAFG--- 994
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
G + + + +S N G SGIT +++ IF
Sbjct: 995 GSKVQDMSEILISHGFNYSGKDFVTSGITG---------------------ESLQAYIFF 1033
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1034 GPIYYQKLKHMVQDKMHSRARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLL 1093
Query: 270 HERLKCKNVANVIQR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
ERL + + I ++G +C C S+ + + +PY AKLL QEL SM +
Sbjct: 1094 LERLMLSSDVHEIDLCENCGLMGYSSWCTTCESSKFVTRMKIPYAAKLLLQEL-LSMNV 1151
>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
polymerase II subunit 2; Short=RNA polymerase II subunit
B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa
polypeptide
gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
Length = 1176
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------------- 120
F + +R V +GDKF+S HGQKG G
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 973
Query: 121 ---EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
Length = 1175
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
Length = 1175
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAHYDKLDDDGIIS 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPENEDELEGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G G
Sbjct: 973 IPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYHLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
Length = 1175
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 131/310 (42%), Gaps = 71/310 (22%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+++E G+V +V+L+ N +G F + +R V +GDKF+S HGQKG G
Sbjct: 892 DASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCG 947
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
E P L+E GK GA G + ATPF +
Sbjct: 948 IQYRQEDMPFTCEGLMPDIIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFNDAV 1007
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ +S LL G G ++ + + + +F
Sbjct: 1008 -------NVQKISTLLQEYGYHLRGNEVMYNGHTGRK--------------INAQVFLGP 1046
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC I+HGA+ L E
Sbjct: 1047 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 1106
Query: 272 RL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C +AN+ C+ C + I + +PY AKLL QEL
Sbjct: 1107 RLFEVSDPYRIHVCNFCGLIAIANLRSNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL 1163
Query: 317 SFSMGITLKF 326
SM I +
Sbjct: 1164 -MSMNIAPRL 1172
>gi|295442842|ref|NP_595819.2| DNA-directed RNA polymerase I complex subunit Rpa2
[Schizosaccharomyces pombe 972h-]
gi|259016134|sp|Q9P7X8.2|RPA2_SCHPO RecName: Full=Probable DNA-directed RNA polymerase I subunit RPA2;
AltName: Full=DNA-directed RNA polymerase I polypeptide
2; Short=RNA polymerase I subunit 2
gi|254745588|emb|CAB66435.2| DNA-directed RNA polymerase I complex subunit Rpa2
[Schizosaccharomyces pombe]
Length = 1174
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 127/292 (43%), Gaps = 59/292 (20%)
Query: 34 DMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKH-TERGLVLKVLLSSNDDGKNFAVVSIR 92
D L F I+ + GD ++ Y E + I+ H TE G V +V L ND G + I
Sbjct: 829 DGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDS-ECQQIH 887
Query: 93 QSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ-----------------TPAQ 126
+ + S +GDKFSS HGQKG+ + F E T
Sbjct: 888 VKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGM 947
Query: 127 LLEAALGK-GACDGLMSYATPFATSTGGVITEQHQS---FVSQLLNCIGARNSGITFIFK 182
+E+ GK GAC GL +TPF + +EQ + F QL+ G G
Sbjct: 948 FIESLAGKAGACHGLAQDSTPF------IYSEQQTAADYFGEQLVKA-GYNYHG------ 994
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
PM +++ I+ + +YQ+ HM DK + R TG LT +PV
Sbjct: 995 --------NEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVK 1046
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRIC 294
RKR GGI FGEM+ D +I HG S + +RL N ++ Q V CR C
Sbjct: 1047 GRKRAGGIRFGEMERDAVIGHGTSFLMQDRL--MNCSDYAQSWV----CRDC 1092
>gi|433637473|ref|YP_007283233.1| DNA-directed RNA polymerase subunit B [Halovivax ruber XH-70]
gi|242392354|dbj|BAH80390.1| RNA polymerase subunit B' [Halovivax ruber XH-70]
gi|433289277|gb|AGB15100.1| DNA-directed RNA polymerase subunit B [Halovivax ruber XH-70]
Length = 610
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 131/296 (44%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 327 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 382
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + +L + G R G
Sbjct: 383 --APQEDM-PFTQEGVVPDLVVNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTP 435
Query: 179 FI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F+ + F + + + + + IF + FYQ+ HM +K+ R
Sbjct: 436 FLGEDEDELRGGLEDAGFNSAGKEVMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHAR 495
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN- 277
+ G Q LT +P R R GG+ G M+ D I HGA+ L ERL C N
Sbjct: 496 SRGPVQVLTRQPTEGRAREGGLRIGTMERDVFIGHGAALTLKERLLDESDREYIHVCGNC 555
Query: 278 ----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ +I + + Y KLL E+ ++GI + + +
Sbjct: 556 GMSAVENVEQRRV---YCPNCDEETEIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 607
>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
Length = 1178
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 165/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKA--EVDNKDI----QVKSRPS----------------DDMLNF 38
+N +++E G FRS Y++ E ++K I + +PS DD +
Sbjct: 800 LNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIA 859
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D++IGK + D S L+++E G+V +V+L+ N +G
Sbjct: 860 PGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 919
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 920 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHA 975
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 976 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1028
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1029 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1074
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1075 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1134
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1135 RNNTFE---CKGCKNKTQISQIRLPYAAKLLFQEL-MAMNIAPRL 1175
>gi|448375016|ref|ZP_21558733.1| DNA-directed RNA polymerase subunit B' [Halovivax asiaticus JCM
14624]
gi|242392352|dbj|BAH80389.1| RNA polymerase subunit B' [Halovivax asiaticus]
gi|445659477|gb|ELZ12283.1| DNA-directed RNA polymerase subunit B' [Halovivax asiaticus JCM
14624]
Length = 610
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 131/296 (44%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 327 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 382
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + +L + G R G
Sbjct: 383 --APQEDM-PFTQEGVVPDLVVNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTP 435
Query: 179 FI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F+ + F + + + + + IF + FYQ+ HM +K+ R
Sbjct: 436 FLGEDEDELRGGLEDAGFNSAGKEVMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHAR 495
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN- 277
+ G Q LT +P R R GG+ G M+ D I HGA+ L ERL C N
Sbjct: 496 SRGPVQVLTRQPTEGRAREGGLRIGTMERDVFIGHGAALTLKERLLDESDREYIHVCGNC 555
Query: 278 ----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ +I + + Y KLL E+ ++GI + + +
Sbjct: 556 GMSAVENVEQRRV---YCPNCDEETEIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 607
>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
Length = 1176
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D ++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|375083053|ref|ZP_09730091.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
5473]
gi|374742289|gb|EHR78689.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
5473]
Length = 1118
Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats.
Identities = 85/285 (29%), Positives = 129/285 (45%), Gaps = 45/285 (15%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
SI ++ E+G+V KV+L+ DG V++R + GDKF+S HGQKGV+G +
Sbjct: 835 SITMRPGEKGIVDKVILTETGDGTKLVKVTVRD----LRIPEFGDKFASRHGQKGVIGLI 890
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ + P + G +I ++ ++ + G R G F
Sbjct: 891 --VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRIDGTAF 944
Query: 180 I---------------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
I F+H ++ D I L + IF + +YQ+ HM DK
Sbjct: 945 IGEPEEKLRKELEELGFRHNGREVMY----DGITGRKL-EADIFVGVIYYQRLHHMVADK 999
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------- 273
+ R+ G Q LT +P R R GG+ FGEM+ D LI HGAS L ERL
Sbjct: 1000 LHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGASMLLVERLLEESDKTEVWV 1059
Query: 274 --KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
C ++A V + YC +C + I K + Y KLL E+
Sbjct: 1060 CESCGHLA-VEDKRRDKVYCPVCGEEEKISKVEISYAFKLLLDEI 1103
>gi|194753345|ref|XP_001958974.1| GF12287 [Drosophila ananassae]
gi|190620272|gb|EDV35796.1| GF12287 [Drosophila ananassae]
Length = 1137
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 131/298 (43%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K E + +V++S+N + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 862 ISYKGPEPSYIERVMVSANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIV 917
Query: 121 EQ-------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGV 154
EQ T + LE GK G +G Y T F GG
Sbjct: 918 EQEDMPYNDLGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAF----GGS 973
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
+ Q+ + + G ++ K +F + P++ + I++ +Y
Sbjct: 974 KVQDIQAELER---------HGFNYMGKDFFYSGITGAPLE---------AYIYSGPVYY 1015
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 1016 QKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 1075
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V R+ +C C S+ + K ++PY KLL QEL+ SM + K
Sbjct: 1076 ISSDAFEVDVCRTCGRLAYCSWCHFCQSSAYVSKISMPYACKLLFQELT-SMNVVPKM 1132
>gi|86451155|gb|ABC96800.1| RNA polymerase II [Rubia tinctorum]
Length = 214
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 105/234 (44%), Gaps = 53/234 (22%)
Query: 67 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQT 123
+E G+V +VLL++N DG F + +R + +GDKFSS HGQKG +G E
Sbjct: 1 SENGMVDQVLLTTNADGLRFVKIRVRS----IRIPQIGDKFSSRHGQKGTVGMTYTQEDM 56
Query: 124 P-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQH 159
P QL+E +GK A G ATPF T
Sbjct: 57 PFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT-------- 108
Query: 160 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
+S+ L+ G + G ++ + L + IF T+YQ+ H
Sbjct: 109 VDSISKALHKCGYQMRGFERMYNGHTGRPLT--------------ATIFLGPTYYQRLKH 154
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
M +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 155 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 208
>gi|282163887|ref|YP_003356272.1| DNA-directed RNA polymerase subunit B' [Methanocella paludicola
SANAE]
gi|282156201|dbj|BAI61289.1| DNA-directed RNA polymerase subunit B' [Methanocella paludicola
SANAE]
Length = 604
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 128/311 (41%), Gaps = 72/311 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E+G+V V+L+ +G A V R LGDKF+S HGQKGV+G +
Sbjct: 321 SVTMRSNEKGIVDTVILTETQNGSRLAKVRTRDQ----RVPELGDKFASRHGQKGVIGLI 376
Query: 121 EQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGG 153
Q T +LE GK G+ +G T F T
Sbjct: 377 AQQEDMPFTENGMVPDLIINPHAIPSRMTIGHVLETIGGKIGSLEGRFVDGTAFNNETED 436
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
+ ++ + F G + K F D I + + IF +
Sbjct: 437 ELRKEFKKF-------------GFSHTGKEVFY--------DGITG-QRITADIFVGVIL 474
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D +I HGA+ L ERL
Sbjct: 475 YQKLYHMVSSKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMALKERL 534
Query: 274 ----------KCKNVANVI-----QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
C N V +R+V YC C + +I K + Y KLL E+
Sbjct: 535 LDESDKVFEYVCNNCGMVATEDKKRRLV---YCPNCGADTNIYKVEMSYAFKLLLDEMK- 590
Query: 319 SMGITLKFDTQ 329
++GI + D +
Sbjct: 591 ALGIAPRLDLE 601
>gi|425771289|gb|EKV09736.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425776820|gb|EKV15021.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1208
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 135/304 (44%), Gaps = 60/304 (19%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ K + + KVL+S+ + V RQ+ +GDKFSS HGQKGV+G +
Sbjct: 925 SMNYKLPDPSYIDKVLVSATEGETQLIKVLTRQT----RRPEVGDKFSSRHGQKGVVGII 980
Query: 121 --------------------------EQTPAQLLEAALGKGACDGLMSYATPFATSTGGV 154
T ++LE GK G++S + T GG
Sbjct: 981 ADQADMPFSDQGINPDIIMNPHGFPSRMTVGKMLELVAGKA---GVLSGQHGYGTCFGGS 1037
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
E+ +SQ+L + G ++ K Y + + + +FT +Y
Sbjct: 1038 PVEE----MSQILI-----DKGFSYGGKDYLTSGITGEALPF---------YVFTGPIYY 1079
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+G S L ERL
Sbjct: 1080 QKLKHMVQDKMHSRAKGPTATLTRQPTEGRSRNGGLRLGEMERDCLIAYGTSQLLLERLM 1139
Query: 275 C---KNVANVIQRVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKF 326
++ +V ++ Y C C S+ ++K +PY AKLL QEL SM +T LK
Sbjct: 1140 ISSDRHEVDVCEQCGFMGYLNWCPGCKSSRSVVKMVIPYAAKLLIQEL-MSMNVTARLKL 1198
Query: 327 DTQL 330
D +
Sbjct: 1199 DDEF 1202
>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Nasonia vitripennis]
Length = 1174
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 166/396 (41%), Gaps = 90/396 (22%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ + +PS DD +
Sbjct: 796 LNASAVERGFFRSVFYRSYKDSETKKFGDQEEQFEKPSRQTCQGMRNALYDKLDDDGIIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 856 PGIRVSGDDVVIGKTMTLPENDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTPAQLLEAALGKGACDGL 140
F + +R V +GDKF+S HGQKG G E P +C+GL
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPF----------SCEGL 961
Query: 141 MS------YATPFATSTGGVITEQHQSFVSQLLNCIGAR---NSGITFIFKHYFLFCLFE 191
+A P + G +I E Q VS IG N + + K L C +
Sbjct: 962 TPDIIINPHAIPSRMTIGHLI-ECIQGKVSANKGEIGDATPFNDAVN-VQKISTLLCEYG 1019
Query: 192 CPMDWIAFIC------LVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRK 245
+ + + + +F T+YQ+ HM +DK+ R G Q L +P+ R
Sbjct: 1020 YQLRGNEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1079
Query: 246 RFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANVIQRVVGGPY 290
R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1080 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE--- 1136
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1137 CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1171
>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
Length = 1175
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 165/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAHYDKLDDDGIIS 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTIMLPENEDELEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1132 KNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
Length = 1175
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D + ++ +P+ DD +
Sbjct: 797 MNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 856
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPDNEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
Length = 1176
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D ++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
Length = 1174
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D + ++ +P+ DD +
Sbjct: 796 MNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 855
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 856 PGIRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 971
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 972 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1071 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1130
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1131 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1171
>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
Length = 1176
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D ++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
terrestris]
gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
impatiens]
Length = 1175
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQIRLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Apis mellifera]
Length = 1154
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 776 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIA 835
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 836 PGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 895
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 896 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHA 951
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 952 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1004
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1005 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1050
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1051 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1110
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1111 RNNTFE---CKGCKNKTQISQIRLPYAAKLLFQEL-MAMNIAPRL 1151
>gi|126722421|dbj|BAF48624.1| DNA-dependent RNA polymerase subunit B' [Natrinema pellirubrum]
Length = 435
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 114/266 (42%), Gaps = 39/266 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 177 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 232
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 233 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 286
Query: 180 IF--KHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ K L E D + + + IF + FYQ+ HM +K+ R+
Sbjct: 287 LGEDKDELREGLEEAGFDSAGKETMYSGITGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 346
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 347 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 406
Query: 278 ---VANVIQRVVGGPYCRICNSADDI 300
V NV QR V YC C+ DI
Sbjct: 407 MSAVENVEQRRV---YCPNCDEETDI 429
>gi|329765755|ref|ZP_08257324.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137821|gb|EGG42088.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 1115
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 142/315 (45%), Gaps = 60/315 (19%)
Query: 46 GDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 90
GDI+IGK Y E + D SI ++ +E G+V V+++ +++G +
Sbjct: 802 GDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIR 861
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFAT 149
+R + +GDKF+S HGQKGVLG L + A+ L + D L++ +A P
Sbjct: 862 VRD----MRIPEIGDKFASRHGQKGVLGILAK--AEDLPYTADGISPDVLINPHAFPSRM 915
Query: 150 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL--- 206
+ G + +S + G++ G F+ + + MD F +
Sbjct: 916 TVGMFM----ESICGKAAALRGSQFDGSAFVGEK---MEEVKPVMDAAGFKYSGKETMYD 968
Query: 207 ----------IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 256
+F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+
Sbjct: 969 GRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEME 1028
Query: 257 CDCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDII 301
DCLIA+GAS L +RL +C VA +V QR CR+C +
Sbjct: 1029 RDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVS 1085
Query: 302 KANVPYGAKLLSQEL 316
+V Y KLL QE+
Sbjct: 1086 SVSVAYAFKLLLQEM 1100
>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Apis florea]
Length = 1175
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQIRLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|393794931|ref|ZP_10378295.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 1115
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 142/315 (45%), Gaps = 60/315 (19%)
Query: 46 GDIVIGK---------YAEIGA------DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVS 90
GDI+IGK Y E + D SI ++ +E G+V V+++ +++G +
Sbjct: 802 GDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIR 861
Query: 91 IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPFAT 149
+R + +GDKF+S HGQKGVLG L + A+ L + D L++ +A P
Sbjct: 862 VRD----MRIPEIGDKFASRHGQKGVLGILAK--AEDLPYTADGISPDVLINPHAFPSRM 915
Query: 150 STGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL--- 206
+ G + +S + G++ G F+ + + MD F +
Sbjct: 916 TVGMFM----ESICGKAAALRGSQFDGSAFVGEK---MEEVKPVMDAAGFKYSGKETMYD 968
Query: 207 ----------IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMK 256
+F + +YQ+ HM DK+ R G Q LT +P R R GG+ FGEM+
Sbjct: 969 GRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEME 1028
Query: 257 CDCLIAHGASGNLHERL-------------KCKNVA--NVIQRVVGGPYCRICNSADDII 301
DCLIA+GAS L +RL +C VA +V QR CR+C +
Sbjct: 1029 RDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY---VCRVCGDKAKVS 1085
Query: 302 KANVPYGAKLLSQEL 316
+V Y KLL QE+
Sbjct: 1086 SVSVAYAFKLLLQEM 1100
>gi|15669230|ref|NP_248035.1| DNA-directed RNA polymerase subunit B' [Methanocaldococcus
jannaschii DSM 2661]
gi|2500640|sp|Q60181.1|RPOB1_METJA RecName: Full=DNA-directed RNA polymerase subunit B'
gi|1591694|gb|AAB99044.1| DNA-directed RNA polymerase, subunit B' (rpoB1) [Methanocaldococcus
jannaschii DSM 2661]
Length = 636
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 140/335 (41%), Gaps = 88/335 (26%)
Query: 44 KSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GD+++GK + EI D S+ ++H E G + KV+L+ +G
Sbjct: 294 KGGDVIVGKTSPPRFLEEHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVK 353
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ----------------- 122
V +R + LGDKF+S HGQKGV+G F E
Sbjct: 354 VKVRD----LRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRM 409
Query: 123 TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
T QLLE GK GA +G G + + + + + + L +G F
Sbjct: 410 TVGQLLEMLGGKVGALEG--------RRIDGTIFSGEKEWDLRKALEALG---------F 452
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
KH+ +++ + I+ I +YQ+ H+ K+ R+ G Q LT +P
Sbjct: 453 KHHGKEVMYDGKTGKKFEVE-----IYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPT 507
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 288
R R GG+ FGEM+ D LI HGA+ L ERL KC + A ++ G
Sbjct: 508 EGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFA-ILDYKRGL 566
Query: 289 PYCRICNSADDIIKA------NVPYGAKLLSQELS 317
YC IC +++ + +PY KLL EL
Sbjct: 567 KYCPICGEIENLYSSKKIPFVRIPYAFKLLLDELK 601
>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
Length = 1175
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPETDDELDSATKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQIRLPYAAKLLFQEL-MAMNIAPRL 1172
>gi|116753353|ref|YP_842471.1| DNA-directed RNA polymerase subunit B' [Methanosaeta thermophila
PT]
gi|116664804|gb|ABK13831.1| DNA-directed RNA polymerase, subunit B' [Methanosaeta thermophila
PT]
Length = 604
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 38/291 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E+G+V V+L+ + +G A V R LGDKF+S HGQKGV+G L
Sbjct: 321 SVTMRSNEKGVVDLVILTESQNGNRLAKVKTRDQ----RIPELGDKFASRHGQKGVVGLL 376
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGV---ITEQHQSFVSQLLNC---IGAR 173
P + + + D L++ +A P + G V I + S + ++ +G +
Sbjct: 377 --LPQEDMPFSESGMVPDLLLNPHAIPSRMTVGHVLEMIGGKVGSLEGRFIDATAFLGEK 434
Query: 174 N----SGITFI-FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
S +T + F H L++ A +++ IF + YQ+ HM K+ R
Sbjct: 435 EWDLRSALTRLGFAHTGKEVLYDG-----ATGERIQADIFVGVILYQKLYHMVTGKMHAR 489
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ FGEM+ D LIAHGA+ L ERL KC
Sbjct: 490 SRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIAHGAALALKERLVEESDKVTELVCSKC 549
Query: 276 KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+A + R C +C + DI + Y KLL E+ S+G+ +
Sbjct: 550 GVIA-IHDRRRNMDLCPVCGTDTDIYPVEMSYAFKLLLDEIK-SLGVAPRL 598
>gi|448734901|ref|ZP_21717121.1| DNA-directed RNA polymerase subunit B' [Halococcus salifodinae DSM
8989]
gi|242392336|dbj|BAH80349.1| RNA polymerase subunit B' [Halococcus salifodinae]
gi|445799531|gb|EMA49910.1| DNA-directed RNA polymerase subunit B' [Halococcus salifodinae DSM
8989]
Length = 608
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMQGEDGSKLSKVSVRDQ----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G V+ + ++ + G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHVL----EMLGGKVGSLEGRRVDGTA 433
Query: 179 FI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + F+ I + + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEEELRGSLEEHGFDSSGKEIMYSGVTGEKIDAEIFVGTIFYQKLYHMVSNKIHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREFVYVCGEC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C +I + + Y KLL E+ ++GI + + +
Sbjct: 554 GMSAVENVEQRRV---YCPNCGEETEIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 605
>gi|307103979|gb|EFN52235.1| hypothetical protein CHLNCDRAFT_56318 [Chlorella variabilis]
Length = 1155
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 126/297 (42%), Gaps = 60/297 (20%)
Query: 68 ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG--------- 118
E+ +V KVLL+SNDD V +R + LGDKFSS HGQKGV+G
Sbjct: 876 EKCVVDKVLLTSNDDCSCVVKVLVRHT----RRPELGDKFSSRHGQKGVVGSIWSQSDMP 931
Query: 119 FLEQ-----------------TPAQLLEAALGKGA-CDGLMSYATPFATSTGGVITEQHQ 160
F E+ T +++E K A C G Y T F G + ++ +
Sbjct: 932 FSERGLVPDLIMNPHGFPSRMTVGKMIELLGSKAAVCTGRFHYGTAFGEPAG--LADKVE 989
Query: 161 SFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHM 220
S +SQ L G SG F+ L + IF +YQ+ HM
Sbjct: 990 S-ISQELVEAGYSYSGKDFLHSGITGEAL--------------EAHIFMGPVYYQKLKHM 1034
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVAN 280
DK+ R G LT +P R R GG+ GEM+ DCLI +GAS L ERL +
Sbjct: 1035 VLDKMHARARGPRVVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDQF 1094
Query: 281 VIQ-----------RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+Q R G C + S + I +PY AKLL QEL SM I K
Sbjct: 1095 EVQVCTHCGLMGYKRHDGLAVCPLLRSPEHIASLRIPYAAKLLFQELQ-SMNIVPKL 1150
>gi|167525657|ref|XP_001747163.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774458|gb|EDQ88087.1| predicted protein [Monosiga brevicollis MX1]
Length = 1097
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 154/383 (40%), Gaps = 81/383 (21%)
Query: 1 MNQASLECGVFR-------SESYKAEVDNKDIQVKSRPSDDMLNFGKIQS-----KSGDI 48
MN+AS + G R S K N ++ P D+ N I + + D+
Sbjct: 738 MNRASFDRGYGRCVVYSKMQTSLKKYNGNLTDIIRPAPRDEAGNAKGIVAVGQPMYNRDV 797
Query: 49 VIGKYAEIGADHSIKLKHTE---RGLVLK------VLLSSNDDGKNFAVVSIRQSVNMVH 99
++ K I I T+ +G V K V++SSN++ + +R +
Sbjct: 798 LVNKQTPIKRGTEIDYASTQVRYKGTVGKDAYCDQVMVSSNNEDSMLIKIRVRST----R 853
Query: 100 SACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALG 133
LGDKFSS HGQKGV G + T +L+E
Sbjct: 854 IPELGDKFSSRHGQKGVCGLIVNQEDMPFNDAGVCPDKIMNPHGFPSRMTVGKLMEFCGA 913
Query: 134 K-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K G +G +Y T F G I E + + G + K Y +
Sbjct: 914 KAGVLNGNYNYGTAFG---GTTIPEMCNTLLKH----------GYNYHGKDYLTSGITGE 960
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
P++ S IF FYQ+ HM DK+ R+ G LT +P R R GG+
Sbjct: 961 PLE---------SYIFMGPVFYQKLKHMVMDKMHARSQGPMTLLTRQPTEGRAREGGLRL 1011
Query: 253 GEMKCDCLIAHGASGNLHERLKCKNVANVIQR-----VVGGP-YCRICNSADDIIKANVP 306
GEM+ DCLI HG+S L ERL + A + ++G +C+ C S+ I K +P
Sbjct: 1012 GEMERDCLIGHGSSMLLLERLMISSDAFEVHACSQCGLLGSAGWCQYCKSSRGISKLQLP 1071
Query: 307 YGAKLLSQELSFSMGITLKFDTQ 329
Y KLL QEL SM I + Q
Sbjct: 1072 YACKLLFQELQ-SMNIVPRLTLQ 1093
>gi|308497698|ref|XP_003111036.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
gi|308242916|gb|EFO86868.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
Length = 1154
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 127/304 (41%), Gaps = 64/304 (21%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D SI K +VLL+ N+D + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 874 DVSISYKTPTPSYAERVLLTYNEDEAHLIKVLLRQT----RRPELGDKFSSRHGQKGVCG 929
Query: 119 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ Q T +L+E GK G +G Y T F
Sbjct: 930 LIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVMNGTYHYGTAFG--- 986
Query: 152 GGVITEQHQSFVSQLLNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209
G + + + ++ N +G SGIT + + I+
Sbjct: 987 GDQVKDVCEELAARGYNYMGKDMLTSGITGQS---------------------LSAYIYF 1025
Query: 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNL 269
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L
Sbjct: 1026 GPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLL 1085
Query: 270 HERLKCKNVANVIQR-----VVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGIT 323
ERL + + V+G +C+ C S+ + +PY KLL QEL SM I
Sbjct: 1086 IERLMVSSDEFKVDVCTGCGVIGSKGWCQKCRSSKSMANIKIPYACKLLFQELQ-SMNIV 1144
Query: 324 LKFD 327
+ D
Sbjct: 1145 PRLD 1148
>gi|154277042|ref|XP_001539366.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414439|gb|EDN09804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 1186
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 150/344 (43%), Gaps = 72/344 (20%)
Query: 19 EVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLS 78
+V++ ++ + ++ L+ G S +G + A I + + KL + + KV++S
Sbjct: 867 KVNHGEVYINKVTPENALSSGITGSDAGRPI----AYIPSPQTYKL--PDPSYIDKVMIS 920
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ---------------- 122
+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 921 ATEAENQLIKVQTRQT----RVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGIVPDII 976
Query: 123 ----------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA 172
T ++LE GK G++S + T+ GG E+ + +
Sbjct: 977 MNPHGFPSRMTVGKMLELIAGKA---GILSGQFGYGTAFGGSPVEEMSAILV-------- 1025
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
+ G ++ K Y + P+ + +F +YQ+ HM +DK+ R G
Sbjct: 1026 -DHGFSYGGKDYLTSGITGEPLP---------AYVFMGPIYYQKLKHMVQDKMHSRARGP 1075
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVI 282
LT +P R R GG+ GEM+ DCLIA+G S L ERL C+N
Sbjct: 1076 RAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCENCG--F 1133
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +
Sbjct: 1134 MGYLG--WCQRCKTSRGVVKMAIPYAAKLLVQEL-FSMNVVARL 1174
>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
[Pyrococcus horikoshii OT3]
Length = 1117
Score = 99.0 bits (245), Expect = 3e-18, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 168/381 (44%), Gaps = 80/381 (20%)
Query: 1 MNQASLECGVFRS---ESYKAE--------VDNKDIQVKS-----------RPSDDMLNF 38
+N+AS+E G+ RS +Y+AE D +I + +D L F
Sbjct: 737 INKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPAPTVRGYRGEKYYRHLDEDGLIF 796
Query: 39 GKIQSKSGDIVIGKYAE--------IGA-------DHSIKLKHTERGLVLKVLLSSNDDG 83
+ + + D++IG+ + +GA + S+ ++ +E+G+V KV+++ DG
Sbjct: 797 PESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSEKGIVDKVIITETGDG 856
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V++R + +GDKF+S HGQKGV+G + P + + D +++
Sbjct: 857 TKLVKVTVRD----LRIPEIGDKFASRHGQKGVIGLI--VPQEDMPWTESGIVPDLIVNP 910
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FKHYFLF 187
+ P + G ++ ++ ++ G R G FI FKH
Sbjct: 911 HGIPSRMTVGQLL----EAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGRE 966
Query: 188 CLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRF 247
+++ + F + IF I +YQ+ HM DK+ R+ G Q LT +P R R
Sbjct: 967 IMYD-GITGKRF----EADIFIGIIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRARE 1021
Query: 248 GGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVGGPYCRICN 295
GG+ FGEM+ D L+ HGA+ L ERL C+N ++ + YC +C
Sbjct: 1022 GGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAIEDKRRHKVYCPVCG 1081
Query: 296 SADDIIKANVPYGAKLLSQEL 316
+ I K + Y KLL EL
Sbjct: 1082 EEERISKVEMSYAFKLLLDEL 1102
>gi|341830389|gb|AEK93549.1| RNA polymerase subunit B' [Halorussus rarus]
Length = 608
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 130/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G V+ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHVL----EMIGGKVGALEGRRVDGTP 433
Query: 179 FIFKHYFLFCL------FECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + F+ I + + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEEELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN- 277
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL C N
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDREWIYVCANC 553
Query: 278 ----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV Q V YC C+ DI + + Y KLL E+ ++GI + + +
Sbjct: 554 GMSAVENVEQNRV---YCPNCDEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 605
>gi|332257258|ref|XP_003277726.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Nomascus leucogenys]
Length = 1079
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 763 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 880 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFHGTE---RLYSGISGLEL 932
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 933 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 981
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 982 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1041
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1042 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|355570728|ref|ZP_09041998.1| DNA-directed RNA polymerase subunit B [Methanolinea tarda NOBI-1]
gi|354826010|gb|EHF10226.1| DNA-directed RNA polymerase subunit B [Methanolinea tarda NOBI-1]
Length = 604
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 149/349 (42%), Gaps = 45/349 (12%)
Query: 8 CGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGK------IQSKSGDIVIGKYAEIGADHS 61
G +ESYK D+ I ++ ++ + GK ++ + D++ E D S
Sbjct: 265 TGAHGAESYKNLDDDGIINPETVVNEKDVLIGKTSPPRFLEEPTSDLIT---VEKRRDTS 321
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE 121
+ ++ ERG+V V+++ ++ V R +GDKF+S HGQKGV+G +
Sbjct: 322 VTMRSNERGIVDTVIITEGENSSRLIKVKTRDQ----RIPEVGDKFASRHGQKGVIGLI- 376
Query: 122 QTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-- 179
TP + + D +++ P A + I + ++ G R +G F
Sbjct: 377 -TPQEDMPFTESGLTPDLVIN---PHAIPSRMTIGHMLEMIGGKVGALEGRRVNGTAFSG 432
Query: 180 ---------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
+ K F E D I + I+ + +YQ+ HM K+ R+
Sbjct: 433 EREEDLRASLKKQGFAHTGREVMYDGITGKRF-SADIYMGVIYYQKLYHMVSSKMHARSR 491
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKN 277
G Q LT +P R R GG+ FGEM+ D +I HGA+ L ERL +C
Sbjct: 492 GPVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMALKERLLDESDKVQEYVCARCGM 551
Query: 278 VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
VA ++ R C C + DI + + Y KLL E+ SMGI +
Sbjct: 552 VA-MLDRKSNTTRCLACGAETDIYQVEMSYAFKLLLDEMK-SMGIAPRL 598
>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
Length = 1178
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 165/407 (40%), Gaps = 108/407 (26%)
Query: 1 MNQASLECGVFRSESYKA--EVDNKDI----QVKSRPS----------------DDMLNF 38
+N +++E G FRS Y++ E ++K I + +PS DD +
Sbjct: 800 LNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSRLTCSGMRNAIYDKLDDDGIIA 859
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D++IGK + D S L+++E G+V +V+L+ N +G
Sbjct: 860 PGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEG 919
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 920 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSSEGLTPDIIINPHA 975
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 976 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYHLRG 1028
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1029 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1074
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1075 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1134
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C+ C + I + +PY AKLL QEL +M I + T
Sbjct: 1135 RNNTFE---CKGCKNKTQIAQIRLPYAAKLLFQEL-MAMNIAPRLMT 1177
>gi|195024375|ref|XP_001985862.1| GH20856 [Drosophila grimshawi]
gi|193901862|gb|EDW00729.1| GH20856 [Drosophila grimshawi]
Length = 1137
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K E + +V++S+N + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 862 ISYKGPEPSYIERVMVSANSEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIV 917
Query: 121 --EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGV 154
E P + LE GK G +G Y T F S
Sbjct: 918 DQEDMPFNDYGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSKAAD 977
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
+ ++L+ G ++ K +F + P++ + I++ +Y
Sbjct: 978 VQ-------AELVR------HGFNYMGKDFFYSGITGGPLE---------AYIYSGPVYY 1015
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 1016 QKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 1075
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V R+ +C C S+ + K ++PY KLL QEL+ SM + K
Sbjct: 1076 ISSDAFEVDVCRTCGRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELT-SMNVVPKL 1132
>gi|242392334|dbj|BAH80348.1| RNA polymerase subunit B' [Halococcus saccharolyticus]
Length = 608
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMQGEDGSKLSKVSVRDQ----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G V+ + ++ + G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHVL----EMLGGKVGSLEGRRVDGTA 433
Query: 179 FI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + F+ I + + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEEELRGSLEEHGFDSSGKEIMYSGVTGEKIDAEIFVGTIFYQKLYHMVSNKIHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREFVYVCGEC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C +I + + Y KLL E+ ++GI + + +
Sbjct: 554 GMSAVENVEQRRV---YCPNCGEETEIHEIEMSYAFKLLLDEMK-ALGIAPRLELE 605
>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
Length = 1141
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 123/312 (39%), Gaps = 66/312 (21%)
Query: 54 AEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQ 113
A + D S+ +++ E+G+V V +S +G V +R +GDKF+S HGQ
Sbjct: 849 ASVRKDTSVTIRYGEKGVVDSVFISETQEGDKLVKVRVRD----YRIPEIGDKFASRHGQ 904
Query: 114 KGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSYATP 146
KGV+G L T QLLE GK A G ATP
Sbjct: 905 KGVIGMLIPQYDMPYTEEGIVPDIIINPHAFPSRMTLGQLLEMLAGKTAALLGKTVDATP 964
Query: 147 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSL 206
F+ + E + + + G +++ I +
Sbjct: 965 FSKEP---VEEIRMKLMKKGYSPDGRE--------------VMYDGRTGEIIGVP----- 1002
Query: 207 IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGAS 266
I I +YQ+ HM DK R+ G Q LT +P R R GG+ FGEM+ D L+ HGAS
Sbjct: 1003 IMIGIVYYQRLHHMVADKFHARSRGPVQLLTRQPTEGRAREGGLRFGEMERDVLVGHGAS 1062
Query: 267 GNLHERLKCKNVANVI------------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 314
L ERL + VI R C I +I V YG KLL Q
Sbjct: 1063 MLLRERLLESSDKTVIYVCAKCGHIGWFDRNKNAYVCPIHGDKGEIYPVEVAYGFKLLIQ 1122
Query: 315 ELSFSMGITLKF 326
EL SMGI +
Sbjct: 1123 EL-MSMGIMPRL 1133
>gi|170091560|ref|XP_001877002.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648495|gb|EDR12738.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1179
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 147/368 (39%), Gaps = 99/368 (26%)
Query: 34 DMLNFGKIQSKSGDIVIGKYAE--IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSI 91
D L F + SGD I Y + G ++ K E G + +V L D G + + I
Sbjct: 839 DGLPFIGARLSSGD-PIAAYVDDTTGRTKFVRYKGDELGYIDEVRLLGFDAG-DTELQKI 896
Query: 92 RQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ-----------------TPA 125
++ + S +GDKFSS HGQKGV + F E T
Sbjct: 897 HITLRITRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFSESGMQPDVIINPHAFPSRMTIG 956
Query: 126 QLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLL----NCIGARN--SGIT 178
L+E+ GK GA GL ATPF S F QLL N G SGIT
Sbjct: 957 MLVESMAGKAGAMHGLAQDATPFKFSEEDTAI---NYFGEQLLAAGYNYYGNEPMYSGIT 1013
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
E D I+ + +YQ+ HM DK + R TG P+T
Sbjct: 1014 GQ----------EFAAD-----------IYIGVVYYQRLRHMVLDKFQVRTTGPVDPVTR 1052
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVIQ----- 283
+PV RKR GGI FGEM+ D LIAHG S L +RL C+ ++I
Sbjct: 1053 QPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYSTAWVCRTCGSLISLGYED 1112
Query: 284 ----RVVGGPYCRICNSAD------------------DIIKANVPYGAKLLSQELSFSMG 321
GG YCR+C +A D+ VPY + L EL+ SMG
Sbjct: 1113 TLKPSGPGGEYCRVCRAASEEEDERERQALATASKGGDLDVVAVPYVFRYLCAELA-SMG 1171
Query: 322 ITLKFDTQ 329
I + + +
Sbjct: 1172 IAVSLEVR 1179
>gi|289193124|ref|YP_003459065.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus sp.
FS406-22]
gi|288939574|gb|ADC70329.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus sp.
FS406-22]
Length = 633
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 140/335 (41%), Gaps = 88/335 (26%)
Query: 44 KSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GD+++GK + EI D S+ ++H E G + KV+L+ +G
Sbjct: 291 KGGDVIVGKTSPPRFLEEHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVK 350
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ----------------- 122
V +R + LGDKF+S HGQKGV+G F E
Sbjct: 351 VKVRD----LRIPELGDKFASRHGQKGVIGLTVPQEDLPFTESGIVPDIIINPHAIPSRM 406
Query: 123 TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
T QLLE GK GA +G G + + + + + + L +G F
Sbjct: 407 TVGQLLEMLGGKVGALEG--------RRIDGTIFSGEKEWDLRKALEALG---------F 449
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
KH+ +++ + I+ I +YQ+ H+ K+ R+ G Q LT +P
Sbjct: 450 KHHGKEVMYDGKTGKKFEVE-----IYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPT 504
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 288
R R GG+ FGEM+ D LI HGA+ L ERL KC + A ++ G
Sbjct: 505 EGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFA-ILDYKRGI 563
Query: 289 PYCRICNSADDIIKA------NVPYGAKLLSQELS 317
YC IC +++ + +PY KLL EL
Sbjct: 564 KYCPICGEIENLYNSKKIPFVRIPYAFKLLLDELK 598
>gi|332257260|ref|XP_003277727.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Nomascus leucogenys]
Length = 1070
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 157/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 694 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 753
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 754 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 810
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 811 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 870
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 871 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFHGTE---RLYSGISGLEL 923
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 924 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 972
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 973 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1032
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1033 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1068
>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
Length = 1150
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D + ++ +P+ DD +
Sbjct: 772 MNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIA 831
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 832 PGIRVSGDDVVIGKTITLPDNEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNAEG 891
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 892 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 947
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 948 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISALLQEYGYQLRG 1000
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1001 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1046
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1047 VRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1106
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1107 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1147
>gi|448725405|ref|ZP_21707863.1| DNA-directed RNA polymerase subunit B' [Halococcus morrhuae DSM
1307]
gi|242392302|dbj|BAH80344.1| RNA polymerase subunit B' [Halococcus dombrowskii]
gi|242392330|dbj|BAH80346.1| RNA polymerase subunit B' [Halococcus morrhuae DSM 1307]
gi|445798522|gb|EMA48925.1| DNA-directed RNA polymerase subunit B' [Halococcus morrhuae DSM
1307]
Length = 611
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 129/295 (43%), Gaps = 44/295 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 328 SVTMRSGESGIVDTVTLMQGEDGSKLSKVSVRDQ----RVPELGDKFASRHGQKGVVGHI 383
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G V+ + ++ + G R G
Sbjct: 384 --APQEDM-PFTEEGVVPDLIVNPHALPSRMTVGHVL----EMLGGKVGSLEGRRVDGTA 436
Query: 179 FI-----------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
F +H F E M + + IF FYQ+ HM +K+
Sbjct: 437 FTGEEEEELRSSLEEHGFDSSGKEI-MHSGVTGEKIDAEIFVGTIFYQKLYHMVSNKIHA 495
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------K 274
R+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +
Sbjct: 496 RSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREFIYVCGE 555
Query: 275 C--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C V NV QR V YC C DI + + Y KLL E+ ++GI + +
Sbjct: 556 CGMSAVENVEQRRV---YCPNCGEETDIHEIEMSYAFKLLLDEMK-ALGIAPRLE 606
>gi|444710488|gb|ELW51468.1| DNA-directed RNA polymerase I subunit RPA2 [Tupaia chinensis]
Length = 1135
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 158/401 (39%), Gaps = 100/401 (24%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDI------------ 48
+N+AS E G YK+E D+ K + DD L FG K GD
Sbjct: 759 VNKASWERGFAHGSVYKSEF--IDLSEKIKQGDDSLVFG---VKPGDPRTLQKLDDDGLP 813
Query: 49 VIGKYAEIGADHSIKL------------KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSV 95
IG + G + L K E +V + + SND G F V I ++
Sbjct: 814 FIGTKLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGSGKFKCVCI--TM 871
Query: 96 NMVHSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLE 129
+ + +GDKF+S HGQKG+L L E P L+E
Sbjct: 872 RVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIE 931
Query: 130 AALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 188
+ GK A GL ATPF S E + ++L G G + Y
Sbjct: 932 SMAGKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGIS 984
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
E D IF + +YQ+ HM DK + R TG+ +T +P+ R G
Sbjct: 985 GLELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQG 1033
Query: 249 GIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY-------- 290
GI FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1034 GIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRN 1093
Query: 291 ----CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1094 RKYNCALCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
Length = 1173
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
MN +++E G FRS +++ D + ++ +P+ DD +
Sbjct: 795 MNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 854
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 855 PGIRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEG 914
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 915 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 970
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 971 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISSLLQEYGYQLRG 1023
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1024 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1069
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1070 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1129
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1130 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MAMNIAPRL 1170
>gi|154152065|ref|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
gi|151553633|gb|AAI48065.1| POLR1B protein [Bos taurus]
gi|296482453|tpg|DAA24568.1| TPA: DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
Length = 1135
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 155/396 (39%), Gaps = 90/396 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + +D L F Q
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSERIKQGDDSLVFGVKPGDPRVLQKLDNDGLPFIGAQ 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
K GD G + K E +V + + SND G F V I ++ + +
Sbjct: 819 LKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGTGKFKCVCI--TMRVPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 937 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNYYGTE---RLYSGISGLELE 989
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 990 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------YC 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYIC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
+CN +D I ++PY + EL+ +M I +K D
Sbjct: 1099 ALCNRSDTIDTISLPYVFRYFVAELA-AMNIKVKLD 1133
>gi|374633176|ref|ZP_09705543.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
MK1]
gi|373524660|gb|EHP69537.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
MK1]
Length = 1124
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 138/340 (40%), Gaps = 80/340 (23%)
Query: 40 KIQSKSGDIVIGK---------YAEIGADHS-----IKLKHTERGLVLKVLLSSNDDGKN 85
+++ K GD++IGK + E+ D S I +H ERG V VL++ DG
Sbjct: 797 EVEVKGGDVLIGKVSPPRFLQEFKELSPDQSKRDTSIITRHGERGTVDLVLVTETSDGNK 856
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------- 120
V +R + +GDKF++ HGQKGV+G L
Sbjct: 857 LVKVRVRD----LRIPEIGDKFATRHGQKGVIGMLIPQVDMPYTVRGLVPDIILNPHALP 912
Query: 121 -EQTPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
T Q++EA GK A G ATPF + E+ Q +S+L G + G
Sbjct: 913 SRMTVGQIMEAIAGKYVAASGHPIDATPFYN----LPIEEIQKKLSEL----GYLSDGTE 964
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ ++S I I +YQ+ HM DK+ R G Q LT
Sbjct: 965 VVYDGRTGEK--------------IKSRILFGIVYYQKLHHMVADKMHGRGRGPVQILTR 1010
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRVV 286
+P R R GG+ FGEM+ DCLI +GA+ + +RL + V+ R
Sbjct: 1011 QPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSDRAVVYVCDQCGYVGWYDRAK 1070
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C I + + Y KLL QEL SM I +
Sbjct: 1071 NKYVCPIHGDKTTLSPVTISYAFKLLLQEL-MSMVIAPRL 1109
>gi|242392290|dbj|BAH80338.1| RNA polymerase subunit B' [Halobacterium jilantaiense]
Length = 608
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG A VS+R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDE----RIPELGDKFASRHGQKGVVGHL 380
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P +LE GK G+ DG TPF
Sbjct: 381 APHEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVDGTPF------ 434
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
T + + + L G ++SG ++ + + IF F
Sbjct: 435 --TGEDEDEIRGTLEDRGFKSSGKEVLYSG--------------VSGEKIEAEIFVGTIF 478
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
Y + HM +K+ R+ G Q LT +P R R GG+ GEM+ D +I HGA+ L ERL
Sbjct: 479 YHKLYHMVSNKIHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLKERL 538
Query: 274 ----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
C N V N QR V YC C D+ + Y KLL E+
Sbjct: 539 LDSSDREEVHVCGNCGMTAVENYEQRRV---YCPNCEEETDVHSIEMSYAFKLLLDEMK- 594
Query: 319 SMGITLKFDTQ 329
++GI + + +
Sbjct: 595 ALGIAPRLELE 605
>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
Length = 1175
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSECKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIS 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGIRVSGDDVVIGKTMTLPENDDELDGTTKKFSKRDASTFLRNSETGVVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ-----------TP-------- 124
F + +R V +GDKF+S HGQKG G + TP
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGITPDIIINPHA 972
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 973 IPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYHLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQIRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
Length = 1083
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 111/402 (27%), Positives = 161/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 705 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 764
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++I K + D S L+ +E G+V +V+++ N +G
Sbjct: 765 PGVRVSGDDVIISKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 824
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 825 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 880
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 881 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 933
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 934 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 979
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 980 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1039
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1040 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1080
>gi|332257256|ref|XP_003277725.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Nomascus leucogenys]
Length = 1135
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 157/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFHGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1133
>gi|242398379|ref|YP_002993803.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM 739]
gi|242264772|gb|ACS89454.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM 739]
Length = 1118
Score = 98.6 bits (244), Expect = 3e-18, Method: Composition-based stats.
Identities = 102/389 (26%), Positives = 170/389 (43%), Gaps = 84/389 (21%)
Query: 1 MNQASLECGVFRS---ESYKAE--------VDNKDI-----------QVKSRPSDDMLNF 38
MN+AS+E G+ RS +Y+AE D +I + +D + F
Sbjct: 737 MNKASIERGLARSTFFRTYEAEEKKYMGGQTDKFEIPDPTVRGFLGEKYYRNLDEDGIAF 796
Query: 39 GKIQSKSGDIVIGKYA---------EIGA-------DHSIKLKHTERGLVLKVLLSSNDD 82
+ + + D+++ + + +GA + SI ++ E G++ K++++ D
Sbjct: 797 PESKVQGKDVLVARTSPPRFLEEQTSLGAGILQGRRETSITMRPGEEGIIDKIIITETGD 856
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS 142
G V++R + GDKF+S HGQKGV+G + P + + D +++
Sbjct: 857 GTKLVKVTVRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMPWTENGIVPDLIVN 910
Query: 143 -YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI---------------FKHYFL 186
+ P + G +I ++ ++ + G R G FI FKH
Sbjct: 911 PHGIPSRMTVGQLI----EAIGGKVASLKGRRIDGTAFIGEPEEKLRKELEELGFKHSGR 966
Query: 187 FCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 246
+++ + F + IF + +YQ+ HM DK+ R+ G Q LT +P R R
Sbjct: 967 EVMYD-GITGRKF----EADIFVGVIYYQRLHHMVADKLHARSRGPVQVLTKQPTEGRAR 1021
Query: 247 FGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRI 293
GG+ FGEM+ D LI HGAS L ERL C ++A V + YC +
Sbjct: 1022 EGGLRFGEMERDVLIGHGASMLLVERLLEESDKTEAWICESCGHLA-VEDKRRDKIYCPV 1080
Query: 294 CNSADDIIKANVPYGAKLLSQELSFSMGI 322
C ++I K + Y KLL E+ +MGI
Sbjct: 1081 CGEEENISKVEMSYAFKLLLDEIK-AMGI 1108
>gi|114579600|ref|XP_001145399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 8 [Pan
troglodytes]
gi|410228170|gb|JAA11304.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410261860|gb|JAA18896.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410261862|gb|JAA18897.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410303046|gb|JAA30123.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410303048|gb|JAA30124.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
Length = 1135
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|402891934|ref|XP_003909183.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Papio anubis]
Length = 1079
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 763 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 880 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 932
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 933 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 981
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 982 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1041
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1042 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|332257262|ref|XP_003277728.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Nomascus leucogenys]
Length = 952
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 576 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 635
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 636 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 692
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 693 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 752
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 753 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFHGTE---RLYSGISGLEL 805
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 806 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 854
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 855 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 914
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 915 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|426336843|ref|XP_004031664.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Gorilla gorilla gorilla]
Length = 1135
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|395646423|ref|ZP_10434283.1| DNA-directed RNA polymerase subunit B [Methanofollis liminatans DSM
4140]
gi|395443163|gb|EJG07920.1| DNA-directed RNA polymerase subunit B [Methanofollis liminatans DSM
4140]
Length = 604
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 136/326 (41%), Gaps = 71/326 (21%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 100
++ SG+++ E D S+ ++ E G+V V+++ ++ V R +
Sbjct: 304 LEEPSGELIA---VEKRRDTSVTMRSNEHGIVDTVIITEGENSSRLVKVRTRD----IRV 356
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKGV+G++ E P +LE GK
Sbjct: 357 PEVGDKFASRHGQKGVVGWIVPQENMPFCEMGIAPDLVINPHAVPSRMTIGHMLEMIGGK 416
Query: 135 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
GA +G ATPF + + + + L +G ++G ++ F F
Sbjct: 417 IGALEGRRIDATPFRG--------EREEDMRESLKRLGFSHTGREVMYDG-FTGKQFHAD 467
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
I+ + +YQ+ HM K+ R+ G Q LT +P R R GG+ FG
Sbjct: 468 -------------IYMGVIYYQKLYHMVSSKMHARSRGPIQVLTRQPTEGRAREGGLRFG 514
Query: 254 EMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDI 300
EM+ D +I HGA+ L ERL KC VA ++ R C C S DI
Sbjct: 515 EMERDVMIGHGAAMALKERLLDESDKVQQYVCAKCGMVA-MLDRKRNITRCLNCGSETDI 573
Query: 301 IKANVPYGAKLLSQELSFSMGITLKF 326
+ Y KLL E+ SMGI +
Sbjct: 574 YSVEMSYAFKLLLDEMK-SMGIAPRL 598
>gi|426336847|ref|XP_004031666.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Gorilla gorilla gorilla]
Length = 1070
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 157/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 694 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVLQKLDDDGLPFIGAK 753
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 754 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 810
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 811 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 870
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 871 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 923
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 924 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 972
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 973 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1032
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1033 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1068
>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
Length = 1176
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRLGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+++ N +G
Sbjct: 857 PGIRVSGDDVVIGKTITLPENDDELEGTTRRYTKRDASTFLRNSETGIVDQVMVTLNREG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G G
Sbjct: 973 IPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAV-------NVQKISSLLQEYGYHLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
Length = 1176
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSESKKIGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGLRVSGDDVVIGKTITLPETDDDLDGTTKRYSKRDGSTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK G+ G + ATPF + + +S L G + G
Sbjct: 974 IPSRMTIGHLIECIQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYQLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANM 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVKLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|402891940|ref|XP_003909186.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 5
[Papio anubis]
Length = 924
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 548 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 607
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 608 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 664
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 665 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 724
Query: 134 K-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 725 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 777
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 778 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 826
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 827 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 886
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 887 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 923
>gi|397465556|ref|XP_003804557.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Pan
paniscus]
Length = 1135
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
Length = 1150
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 163/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N ++E G FRS Y++ D + ++ +P+ DD +
Sbjct: 772 LNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRSNCQGMRNALYDKLDDDGIIA 831
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 832 PGLRVSGDDVVIGKTITLPETDDELEGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEG 891
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 892 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 947
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 948 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1000
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1001 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1046
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL C +AN+
Sbjct: 1047 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1106
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1107 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMSIAPRL 1147
>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
Length = 1099
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 111/402 (27%), Positives = 161/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ FRS SYK + K +V +P+ DD L
Sbjct: 721 MNRSAVDRSFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 780
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 781 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 840
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 841 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 896
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 897 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 949
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 950 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 995
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 996 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1055
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1056 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1096
>gi|428672278|gb|EKX73192.1| DNA-directed RNA polymerase III subunit, putative [Babesia equi]
Length = 1363
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 132/307 (42%), Gaps = 59/307 (19%)
Query: 43 SKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSAC 102
S +G + + + ++K + +++ S G + +RQ + S
Sbjct: 1067 SSTGRVPLANFGAGSKMKAVKYPFNRPAYIDRIICSETLGGTRLYKIMLRQ----MRSPE 1122
Query: 103 LGDKFSSMHGQKGVLGFLEQ--------------------------TPAQLLEAALGKGA 136
+GDKFSS HGQKGV+G +E T ++LE K A
Sbjct: 1123 VGDKFSSRHGQKGVVGLIESQENLPFSEFGWVPDLVMNPHGFPSRMTVGKMLELVASKAA 1182
Query: 137 C-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMD 195
DGL TPF +T + E + ++L G +G ++ + P++
Sbjct: 1183 VLDGLFKDGTPFQENT---LPE-----IERILESKGFHKAGKEILYS-----GITGEPLE 1229
Query: 196 WIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 255
+ IFT +YQ+ HM +DK+ R+ G + +P R R GG+ GEM
Sbjct: 1230 ---------TYIFTGPIYYQRLKHMVQDKIHARSRGPRHNINRQPTEGRSRDGGLRLGEM 1280
Query: 256 KCDCLIAHGASGNLHERLKCKN---VANVIQR--VVG-GPYCRICNSADDIIKANVPYGA 309
+ DCLIA+GASG + ERL + +V +R +G +C C ++ +PY
Sbjct: 1281 ERDCLIAYGASGLIVERLMLSSDVFTLDVCRRCGFIGYDGWCTYCKQHGLTVQVAIPYAC 1340
Query: 310 KLLSQEL 316
KLL QEL
Sbjct: 1341 KLLFQEL 1347
>gi|426336849|ref|XP_004031667.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Gorilla gorilla gorilla]
Length = 952
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 576 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVLQKLDDDGLPFIGAK 635
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 636 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 692
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 693 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 752
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 753 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 805
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 806 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 854
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 855 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 914
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 915 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|307204008|gb|EFN82912.1| DNA-directed RNA polymerase III subunit RPC2 [Harpegnathos saltator]
Length = 1081
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 128/301 (42%), Gaps = 60/301 (19%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K E V + LL+SN D + +RQ+ +GDK SS HGQKGV+G
Sbjct: 789 DAEIYYKGLEPAYVEQSLLTSNADDSFLIKLLLRQT----RRPEIGDKLSSRHGQKGVIG 844
Query: 119 ---------FLEQ-----------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
F +Q T +L+E GK G +G +T F S
Sbjct: 845 SIVNPEDLPFNDQGIVPDIIMNPHGFPSRMTVGKLIEILAGKVGILNGEFHDSTAFGGSK 904
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
++EQ Q G ++ K F + PM+ + I+T
Sbjct: 905 VDDLSEQMQKH-------------GYNYLGKDCFYSGITGEPME---------AYIYTGT 942
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R G +T +P R + GG+ FGEM+ DCL+A+GAS L E
Sbjct: 943 VYYQRLKHMVQDKIHARAKGPRVVMTRQPTEGRSKDGGLRFGEMERDCLVAYGASMMLIE 1002
Query: 272 RLKCK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
RL +V N + +C+ C S +I +PY KLL EL SM I +
Sbjct: 1003 RLMLSSDGVKVDVCNSCGLMGYSGWCQSCRSNSNISSVTMPYACKLLLHELQ-SMNIVPR 1061
Query: 326 F 326
Sbjct: 1062 L 1062
>gi|426336845|ref|XP_004031665.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Gorilla gorilla gorilla]
Length = 1079
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVLQKLDDDGLPFIGAK 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 763 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 880 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 932
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 933 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 981
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 982 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1041
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1042 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|397465558|ref|XP_003804558.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Pan
paniscus]
Length = 1079
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 763 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 880 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 932
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 933 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 981
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 982 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1041
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1042 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|402891932|ref|XP_003909182.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Papio anubis]
Length = 1135
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|402891936|ref|XP_003909184.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Papio anubis]
Length = 1070
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 157/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 694 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 753
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 754 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 810
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 811 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 870
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 871 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 923
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 924 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 972
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 973 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1032
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1033 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1068
>gi|261403646|ref|YP_003247870.1| DNA-directed RNA polymerase subunit B' [Methanocaldococcus
vulcanius M7]
gi|261370639|gb|ACX73388.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus vulcanius
M7]
Length = 643
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 136/319 (42%), Gaps = 56/319 (17%)
Query: 44 KSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GD+++GK + EI D SI ++H E G V KV+L+ +G
Sbjct: 294 KGGDVIVGKTSPPRFLEEHEITIQVKPQRRDSSIVVRHGEEGYVDKVILTETKEGNRLVK 353
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS-YATPF 147
V +R + LGDKF+S HGQKGV+G P + L D +++ +A P
Sbjct: 354 VKVRD----LRVPELGDKFASRHGQKGVIGL--TVPQEDLPFTESGIVPDIIINPHAIPS 407
Query: 148 ATSTGGVITEQHQSFVSQLLNCIGARNSGITFI------FKHYFLFCLFECPMDWIAFIC 201
+ G ++ + ++ + G R G F + FE + +
Sbjct: 408 RMTVGQLL----EMLGGKVGSLEGRRIDGTIFTGETEWDLRKALEALGFESHGKEVMYDG 463
Query: 202 LV----RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKC 257
I+ + +YQ+ H+ K+ R+ G Q LT +P R R GG+ FGEM+
Sbjct: 464 KTGKKFEVEIYIGVAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMER 523
Query: 258 DCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDIIKA- 303
D LI HGA+ L ERL KC + A ++ G YC IC +++ +
Sbjct: 524 DVLIGHGAAMLLKERLMDESDPYDICICSKCGDFA-ILDYRRGLKYCPICGEIENLYNSK 582
Query: 304 -----NVPYGAKLLSQELS 317
+PY KLL EL
Sbjct: 583 KIPFVRIPYAFKLLLDELK 601
>gi|296109332|ref|YP_003616281.1| DNA-directed RNA polymerase subunit B [methanocaldococcus infernus
ME]
gi|295434146|gb|ADG13317.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus infernus
ME]
Length = 629
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 132/315 (41%), Gaps = 76/315 (24%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ ++H E G V KV+++ +G V +R + LGDKF+S HGQKGV+G
Sbjct: 318 DSSVCVRHGEEGYVDKVMITETKEGNKLVKVKVRD----LRVPELGDKFASRHGQKGVIG 373
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
L E P QLLE GK G+ +G
Sbjct: 374 LLVNQEDMPFTESGIVPDIIINPHGIPSRMTVGQLLEMIGGKVGSLEG--------RRID 425
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G + + + + + L +G FKH+ +++ + I+ +
Sbjct: 426 GTIFNGEEEMSLREALEKLG---------FKHHGREVMYDGKTGK-----KLEVEIYIGV 471
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM K+ R+ G Q LT +P R R GG+ FGEM+ D LI HGA+ L E
Sbjct: 472 IYYQKLHHMVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKE 531
Query: 272 RLK----------CKNVANV----IQRVVGGPYCRICNSADD------IIKANVPYGAKL 311
RL C N + +R + YC +C + + K +PY KL
Sbjct: 532 RLLDESDPYDVYICSNCGDFAIFDFRRKIK--YCPVCGEVESPFVDRKMAKIRIPYAFKL 589
Query: 312 LSQELSFSMGITLKF 326
L EL SM I+ KF
Sbjct: 590 LVDELK-SMCISPKF 603
>gi|114579606|ref|XP_001144853.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Pan troglodytes]
Length = 952
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 576 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 635
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 636 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 692
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 693 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 752
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 753 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 805
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 806 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 854
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 855 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 914
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 915 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|410337759|gb|JAA37826.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410337761|gb|JAA37827.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
Length = 1135
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|397465562|ref|XP_003804560.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Pan paniscus]
Length = 952
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 576 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 635
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 636 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 692
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 693 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 752
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 753 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 805
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 806 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 854
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 855 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 914
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 915 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|114579608|ref|XP_001145162.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 6 [Pan
troglodytes]
Length = 1070
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 157/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 694 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 753
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 754 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 810
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 811 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 870
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 871 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 923
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 924 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 972
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 973 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1032
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1033 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1068
>gi|332814147|ref|XP_001144997.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4 [Pan
troglodytes]
Length = 1079
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 763 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 880 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 932
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 933 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 981
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 982 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1041
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1042 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|402891938|ref|XP_003909185.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Papio anubis]
Length = 952
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 576 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 635
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 636 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 692
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 693 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 752
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 753 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 805
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 806 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 854
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 855 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 914
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 915 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 951
>gi|397465560|ref|XP_003804559.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3 [Pan
paniscus]
Length = 1070
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 157/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 694 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 753
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 754 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 810
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 811 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 870
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 871 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 923
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 924 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 972
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 973 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1032
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1033 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1068
>gi|328771672|gb|EGF81711.1| hypothetical protein BATDEDRAFT_29606 [Batrachochytrium dendrobatidis
JAM81]
Length = 1167
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 128/297 (43%), Gaps = 59/297 (19%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
+ K+ ++ +VLL++N++ + V IRQ+ LGDKFSS HGQKGV G +
Sbjct: 890 MSFKYPGDAVIDQVLLTTNEEDQTLIKVLIRQT----RRPELGDKFSSRHGQKGVCGIIV 945
Query: 121 --EQTP-----------------------AQLLEAALGKGACDGLMSYATPFATSTGGVI 155
E P +++E GK GL + + T+ GG
Sbjct: 946 SQEDMPFSENGVVPDVIMNPHGFPSRMTVGKMIELLAGKA---GLFAGQVQYGTAFGGSK 1002
Query: 156 TEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 215
E + + +G ++ K + P+ ++ IF +YQ
Sbjct: 1003 VEDMSRILVE---------NGYSYSGKDMLTSGITGEPL---------QAYIFFGPVYYQ 1044
Query: 216 QFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC 275
+ HM DK+ R+ G LT +P R R GG+ GEM+ DCLI HGAS L ERL
Sbjct: 1045 KLKHMVMDKMHARSRGPRATLTRQPTEGRSRDGGLRVGEMERDCLIGHGASSLLIERLLY 1104
Query: 276 KNVANVIQR-----VVGG--PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
+ A ++ ++G YC C ++ +PY KLL QEL SM + +
Sbjct: 1105 SSDAYDVEVCSRCGIIGAWHGYCPFCKMRSGVVTVKMPYACKLLFQEL-MSMNVVPR 1160
>gi|448307074|ref|ZP_21496975.1| DNA-directed RNA polymerase subunit B' [Natronorubrum bangense JCM
10635]
gi|242392392|dbj|BAH80409.1| RNA polymerase subunit B' [Natronorubrum bangense]
gi|445596621|gb|ELY50706.1| DNA-directed RNA polymerase subunit B' [Natronorubrum bangense JCM
10635]
Length = 609
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 40/293 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +++ +A P + G ++ + +L G R G F
Sbjct: 382 --APQEDMPFTQDGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + + IF I FYQ+ HM +K+ R+
Sbjct: 436 LGEDESELRGGLEDAGFDSAGKEVMYSGVTGEKIEAEIFVGIIFYQKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN------------ 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL ++
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLVDESDREEVYISAETG 555
Query: 278 ---VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
V +V QR V Y ++ DI + + Y KLL E+ ++GI + +
Sbjct: 556 MIAVQDVNQRRV---YDQLTGDESDIHRVEISYAFKLLLDEM-MALGIRPRLN 604
>gi|333911407|ref|YP_004485140.1| DNA-directed RNA polymerase subunit B [Methanotorris igneus Kol 5]
gi|333751996|gb|AEF97075.1| DNA-directed RNA polymerase subunit B [Methanotorris igneus Kol 5]
Length = 613
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 145/352 (41%), Gaps = 83/352 (23%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLL 77
+D L + + KSGD++IGK + EI D S+ ++H E G+V V+L
Sbjct: 280 EDGLVEPECEVKSGDVIIGKTSPPRFLEEHEISLQTKSQRRDTSVTVRHGEEGIVDCVIL 339
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGAC 137
+ +G V +R + LGDKF+S HGQKGV+G + P + +
Sbjct: 340 TETKEGNRLVKVRVRD----LRIPELGDKFASRHGQKGVIGLI--VPQEDMPFTESGIVP 393
Query: 138 DGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITFI-------- 180
D +++ +A P + G Q+L IG R G F
Sbjct: 394 DLIINPHAIPSRMTVG------------QVLEMIGGKVGALECRRVDGTIFSGEKEWDLR 441
Query: 181 -------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
FKH+ +++ + IF + +YQ+ H+ K+ R+ G
Sbjct: 442 KTLEKYGFKHHGKEVMYDGKTGKKFEVE-----IFIGVVYYQKLHHLVAGKIHARSRGPV 496
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVAN 280
Q LT +P R R GG+ FGEM+ D L+ HGA+ L ERL C +A
Sbjct: 497 QVLTRQPTEGRAREGGLRFGEMERDVLVGHGAAMLLKERLLDESDPDDEYICVNCGEIA- 555
Query: 281 VIQRVVGGPYCRICNSADD------IIKANVPYGAKLLSQELSFSMGITLKF 326
+ G YC IC ++ I +PY KLL EL SM I K
Sbjct: 556 IFDHRRGIKYCPICGETEELHDNRKIPSVRIPYAFKLLLDELK-SMCIYPKL 606
>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
Length = 1117
Score = 98.2 bits (243), Expect = 4e-18, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 154/349 (44%), Gaps = 69/349 (19%)
Query: 11 FRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAE--------IGA---- 58
+R E Y +D +D L F + + + D++IG+ + +GA
Sbjct: 780 YRGEKYYRHLD-----------EDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ 828
Query: 59 ---DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 115
+ S+ ++ +E+G+V KV+++ DG V++R + +GDKF+S HGQKG
Sbjct: 829 ERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRD----LRIPEIGDKFASRHGQKG 884
Query: 116 VLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
V+G + P + + D +++ + P + G ++ ++ ++ G R
Sbjct: 885 VIGLI--VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLL----EAIGGKVAALKGRRV 938
Query: 175 SGITFI---------------FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
G FI FKH +++ + F + IF + +YQ+ H
Sbjct: 939 DGTAFIGEPEEKLRKELEELGFKHTGREIMYD-GITGKRF----EADIFIGVIYYQRLHH 993
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------ 273
M DK+ R+ G Q LT +P R R GG+ FGEM+ D L+ HGA+ L ERL
Sbjct: 994 MVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDK 1053
Query: 274 ----KCKNVANVI--QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
C+N ++ + YC +C + I K + Y KLL EL
Sbjct: 1054 TEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDEL 1102
>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
vitripennis]
Length = 1175
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 168/406 (41%), Gaps = 110/406 (27%)
Query: 1 MNQASLECGVFRSESYKAEVDNK-----DIQVK-SRPS-----------------DDMLN 37
+N +++E G FRS Y++ D++ D++ + +P+ D +++
Sbjct: 797 LNTSAVERGFFRSVFYRSYKDSETKRLGDVEEQFEKPNRQTCQGMRNAIYDKLDEDGIIS 856
Query: 38 FGKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDD 82
G I+ D++IGK + D S L+++E G+V +V+L+ N +
Sbjct: 857 PG-IRVSGDDVIIGKTMTLPETDDDLDSSTKRFTKRDASTFLRNSETGIVDQVMLTLNSE 915
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 GYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGMTPDIIINPH 971
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E GK A G + ATPF + + +S LL G +
Sbjct: 972 AIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAV-------NVQKISTLLMEYGYQLR 1024
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + + + +F T+YQ+ HM +DK+ R G Q
Sbjct: 1025 GNEIMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVAN 280
L +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1131 LRNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|50546993|ref|XP_500966.1| YALI0B16258p [Yarrowia lipolytica]
gi|49646832|emb|CAG83219.1| YALI0B16258p [Yarrowia lipolytica CLIB122]
Length = 1169
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 132/298 (44%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
+ + E ++ KV++S D V +RQ+ LGDKFSS HGQKGV G +
Sbjct: 893 VTYRGPEPSIIDKVMVSVTDKELYLIKVLLRQT----RRPELGDKFSSRHGQKGVCGIIV 948
Query: 121 --EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGV 154
E P +++E GK G DG + Y T F GG
Sbjct: 949 NQEDMPFSDSGVCPDIIMNPHGFPSRMTVGKMIELISGKAGVLDGSLQYGTCF----GGS 1004
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
E +S++L G SG ++ CL ++ IF +Y
Sbjct: 1005 KLED----MSKILVDHGYSYSGKDMLYSGTSGECL--------------QAYIFFGPIYY 1046
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM DK+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL
Sbjct: 1047 QKLKHMVMDKMHARPRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM 1106
Query: 275 CKN---VANVIQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ A+V Q+ ++G +C C + ++K +PY AKLL QEL SM I +
Sbjct: 1107 YSSDAFEADVCQKCGLLGYQGWCNSCQTTAHVVKMTLPYAAKLLFQEL-VSMNIAPRL 1163
>gi|386001092|ref|YP_005919391.1| DNA-directed RNA polymerase subunit B' [Methanosaeta harundinacea
6Ac]
gi|312183601|gb|ADQ42370.1| DNA-directed RNA polymerase subunit B' [Methanosaeta harundinacea
6Ac]
gi|357209148|gb|AET63768.1| DNA-directed RNA polymerase subunit B' [Methanosaeta harundinacea
6Ac]
Length = 607
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 126/298 (42%), Gaps = 52/298 (17%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E+G+V V+L+ + +G A V R LGDKF+S HGQKGV+G +
Sbjct: 324 SVTMRSNEKGVVDTVILTESSNGNRLAKVKTRDQ----RVPELGDKFASRHGQKGVIGLI 379
Query: 121 EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI 180
PA + G+ + +A P + G V L IG + +
Sbjct: 380 -VPPADMPFTEAGQVPDLIVNPHAIPSRMTVGHV------------LEMIGGKMGSLEGR 426
Query: 181 FKHYFLFCLFECPMDWIAFIC-------------------LVRSLIFTWITFYQQFIHMS 221
F F L E D A + + + +F + YQ+ HM
Sbjct: 427 FVDATAF-LGEEETDMRAALTKFGFSHTGREVMYNGINGEQIMADVFVGVILYQKLYHMV 485
Query: 222 EDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------- 273
K+ R+ G Q LT +P R R GG+ FGEM+ D LIAHGA+ L ERL
Sbjct: 486 AGKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIAHGAALALKERLVDESDKVT 545
Query: 274 -----KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+C +A + + YC +C S +I + Y KLL E+ S+G+ +
Sbjct: 546 ELVCSRCGMIA-IHDKRRNVDYCSVCGSDTEIYPVEMSYAFKLLLDEIK-SLGVAPRL 601
>gi|296421976|ref|XP_002840539.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636757|emb|CAZ84730.1| unnamed protein product [Tuber melanosporum]
Length = 434
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 128/297 (43%), Gaps = 60/297 (20%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D + K + + KVL+S+++ + V RQ+ LGDKFSS HGQKGV G
Sbjct: 149 DAPMTYKLHDHAYIDKVLVSTSESEQTLIKVLTRQT----RRPELGDKFSSRHGQKGVCG 204
Query: 119 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ + T +++E GK G G + Y T F
Sbjct: 205 IIARQEDMPFSDTGIIPDIIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAF---- 260
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
GG + ++++L G SG F+ L + IF
Sbjct: 261 GGSKVDD----MAKILVDNGFSYSGKDFVTSGITGESL--------------EAYIFFGP 302
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 303 IYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLE 362
Query: 272 RLKCKNVANVIQ--RVVG----GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
RL + + I V G +C C S+ ++K +PY AKLL QEL SM +
Sbjct: 363 RLMLSSDVHEIDLCEVCGLMGHSNWCTTCQSSKGVVKMKIPYAAKLLIQEL-LSMNV 418
>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
japonicus yFS275]
gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
japonicus yFS275]
Length = 1160
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 143/348 (41%), Gaps = 82/348 (23%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYAEIGA-DHSIKL-----------------KHTERGLVL 73
DD L Q +SG + I K A D++I L K E +
Sbjct: 834 EDDGLAGVGCQVQSGQVYINKQTPTNALDNTIALGQPQTTESGYRATPMTYKAPEPAYID 893
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV+L+++D + V RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 894 KVMLTNSDADQTLVKVLTRQT----RRPELGDKFSSRHGQKGVCGVIIQQEDMPFNDIGI 949
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T +++E GK G G + Y T F G + + + V
Sbjct: 950 CPDIIMNPHGFPSRMTVGKMIELLSGKAGVLRGTLEYGTCFG---GSRVEDMSRILVEHG 1006
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT + + IF +YQ+ HM DK
Sbjct: 1007 YNYSGKDMLTSGITG---------------------EQLEAYIFFGPIYYQKLKHMVLDK 1045
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A +V
Sbjct: 1046 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAFEVDV 1105
Query: 282 IQR--VVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C S+ ++K +PY AKLL QEL SM I +
Sbjct: 1106 CENCGLLGYKGWCNSCESSKHVVKMTIPYAAKLLFQEL-MSMNIIPRL 1152
>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
Length = 1142
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 142/334 (42%), Gaps = 46/334 (13%)
Query: 8 CGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGK---IQSKSGDIVIGKYAEIGADHSIKL 64
C R+ Y D+ I +R S D + GK + D+ D S L
Sbjct: 837 CQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTKRDASTFL 896
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTP 124
+++E G+V +V+L+ N +G F + +R V +GDKF+S HGQKG G +
Sbjct: 897 RNSETGIVDQVMLTVNAEGYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGITYRQE 952
Query: 125 AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHY 184
A DGL T +I H I +R + I+ + + Y
Sbjct: 953 DMPFTA-------DGL----------TPDIIINPH---------AIPSRMTKISNLLQEY 986
Query: 185 FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 244
M V + IF T+YQ+ HM +DK+ R G Q L +P+ R
Sbjct: 987 GYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 1046
Query: 245 KRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRVVGGPY-CR 292
R GG+ FGEM+ DC I+HGA+ L ERL ++ N+ I + + C+
Sbjct: 1047 ARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLLAIANLRNNTFECK 1106
Query: 293 ICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C + I + +PY KLL QEL SM I +
Sbjct: 1107 GCRNKTQISQIRLPYACKLLFQEL-MSMSIAPRM 1139
>gi|170032393|ref|XP_001844066.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Culex
quinquefasciatus]
gi|167872352|gb|EDS35735.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Culex
quinquefasciatus]
Length = 1129
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 142/330 (43%), Gaps = 81/330 (24%)
Query: 60 HSIKLKHTERGLV--LKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV- 116
H +K H E G+V +K+ +++ AV++ R +V + +GDKF+S GQKG+
Sbjct: 825 HVVKFDHHEDGIVDNIKLCGTTSASAPKKAVITYR----IVRNPNVGDKFASRAGQKGIC 880
Query: 117 --------LGFLEQ-----------------TPAQLLEAALGK-GACDGLMSYATPFATS 150
L F E T A ++E GK GAC GL+ ATPF
Sbjct: 881 SQKWPAVDLPFTESGMIPDIIFNPHGFPSRMTIAMMIETMAGKTGACHGLVHDATPFR-- 938
Query: 151 TGGVITEQHQS--FVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIF 208
TE++ + + +LL G G ++ +D +++ IF
Sbjct: 939 ----YTEENTAIDYFGRLLESSGYNYFGTERMYSG----------VDGRE----MKADIF 980
Query: 209 TWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGN 268
+ YQ+ HM DK + R+TG LT +P R R GG+ FGEM+ D LIAHGAS
Sbjct: 981 FGVVHYQRLRHMVSDKWQVRSTGPLDQLTHQPNKGRSRGGGVRFGEMERDALIAHGASFL 1040
Query: 269 LHERL--KCKNVANVIQRVVG---GPY--------------------CRICNSADDIIKA 303
L +RL + ++ R G GP CR+C S I
Sbjct: 1041 LQDRLFHGSDKITTLVCRSCGTLIGPISSITKKVATNATETERTPATCRLCRSDQGIGHV 1100
Query: 304 NVPYGAKLLSQELSFSMGITLKFDTQLSGV 333
+PY K L +L+ +M I +K D L V
Sbjct: 1101 EIPYIFKFLVSQLT-AMNINVKLDLALPKV 1129
>gi|126722425|dbj|BAF48626.1| DNA-dependent RNA polymerase subunit B' [Halobiforma
nitratireducens]
Length = 435
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 115/266 (43%), Gaps = 39/266 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 177 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVIGHL 232
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 233 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSLEGRRVDGTPF 286
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + FE + + V + IF+ + FYQ+ HM +K+ R+
Sbjct: 287 LGEDEEDLRKGLEEAGFEPSGKETMYSGIAGEKVEAEIFSGVIFYQKLYHMVSNKLHARS 346
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC- 275
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 347 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREYIPICGQCG 406
Query: 276 -KNVANVIQRVVGGPYCRICNSADDI 300
V NV QR V YC C+ DI
Sbjct: 407 MSAVENVEQRRV---YCPNCDEETDI 429
>gi|168006293|ref|XP_001755844.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693163|gb|EDQ79517.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1135
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 125/298 (41%), Gaps = 61/298 (20%)
Query: 68 ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----- 122
E +V KVLL+SND+ IRQ+ +GDKFSS HGQKGV G + Q
Sbjct: 855 ETAVVDKVLLTSNDENHFVVKCLIRQT----RRPEVGDKFSSRHGQKGVCGTIVQQEDFP 910
Query: 123 ---------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQ 160
T +++E GK G +G Y + F +G
Sbjct: 911 FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGLHNGKFHYGSAFGEPSGHA---DKV 967
Query: 161 SFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHM 220
S +S L G SG FI+ + P+ ++ IF +YQ+ HM
Sbjct: 968 STISATLVKHGFSYSGKDFIYS-----GITGSPL---------QAYIFMGPIYYQKLKHM 1013
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVAN 280
DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS + ERL +
Sbjct: 1014 VLDKMHARARGPRVVLTRQPTEGRSREGGLRLGEMERDCLIAYGASMMILERLMISSDQF 1073
Query: 281 VIQRVVG----GPY--------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
IQ G Y C C S D+I +PY KLL QEL SM I +
Sbjct: 1074 QIQVCTKCGMIGYYHHKLKICLCSTCKSGDNIATMKLPYACKLLFQELQ-SMNIVPRL 1130
>gi|145525932|ref|XP_001448777.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416343|emb|CAK81380.1| unnamed protein product [Paramecium tetraurelia]
Length = 1203
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 132/313 (42%), Gaps = 75/313 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ + ERG+V VL+S N G V +R + +GDKF S HGQKG G
Sbjct: 912 SLLTRRAERGVVDSVLISENQKGYKLVKVKVRS----LRIPQIGDKFCSRHGQKGTCGMT 967
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P L+E K + G + ATPFA +
Sbjct: 968 YRQEDLPFTLVGISPDLTINPHCIPSRMTIGHLIECLSSKLASIKGQFNDATPFAQISVN 1027
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
I + L+ +G + G + + + +F+ P IF T+
Sbjct: 1028 DIANK--------LHEVGWQKWG-NEVMTNPYSGNMFQIP-------------IFVGPTY 1065
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
YQ+ H+ +DK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG + L ER
Sbjct: 1066 YQRLRHLVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKERT 1125
Query: 274 -------------KCK--NVANVIQRVVGGPYCRIC---NSADDIIKANVPYGAKLLSQE 315
KC VAN+ + YC IC N + I + +PY AK L QE
Sbjct: 1126 YDVSDAFRVHVCSKCGLFAVANLENQEF---YCNICKNTNQQNQIYQVLMPYAAKTLIQE 1182
Query: 316 L-SFSMGITLKFD 327
L S ++ LKFD
Sbjct: 1183 LISMNIAPRLKFD 1195
>gi|386780981|ref|NP_001247552.1| DNA-directed RNA polymerase I subunit RPA2 [Macaca mulatta]
gi|355751581|gb|EHH55836.1| hypothetical protein EGM_05119 [Macaca fascicularis]
gi|380817102|gb|AFE80425.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
gi|383422125|gb|AFH34276.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
gi|384949774|gb|AFI38492.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
Length = 1135
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D ++ + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRILQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|323447819|gb|EGB03728.1| hypothetical protein AURANDRAFT_39265 [Aureococcus anophagefferens]
Length = 1222
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 135/316 (42%), Gaps = 71/316 (22%)
Query: 71 LVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--- 124
+V +VLL++N+ + V +RQ +GDKF+S HGQKGV G + E P
Sbjct: 903 VVDRVLLTANETDQFLVKVMVRQ----CRRPEVGDKFASRHGQKGVCGAIVSQEDMPFSD 958
Query: 125 --------------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFV 163
+++E GK G C G +Y T F TG S
Sbjct: 959 TGVCPDVIMNPHGFPSRMTVGKIIELVAGKCGVCSGRQAYGTAFGEKTGSADCASEAS-- 1016
Query: 164 SQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSED 223
C ++ G ++I K + P+ R +F FYQ+ HM D
Sbjct: 1017 -----CTLLKH-GFSYIGKDMLYSGISGEPL---------RVYVFMGPVFYQKLKHMVMD 1061
Query: 224 KVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK--------- 274
K+ R G LT +P R R GG+ GEM+ DCLI++GA+ + ERL
Sbjct: 1062 KMHARARGPRAQLTRQPTEGRSRDGGLRLGEMERDCLISYGAANLITERLMISSDQFDVH 1121
Query: 275 -CK-------NVANVIQRVVG--GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT- 323
C+ + A +R+ +C+ C S + + + +PY KLL QEL SM +T
Sbjct: 1122 VCEGCGLLGYSTAQNTERIDSTFTSWCQNCRSNEQMARICIPYACKLLFQELQ-SMNVTP 1180
Query: 324 -LKFDTQLSGVSMAAV 338
LK + L G S A V
Sbjct: 1181 RLKLEDML-GASTAPV 1195
>gi|347835281|emb|CCD49853.1| similar to DNA-directed rna polymerase III subunit [Botryotinia
fuckeliana]
Length = 1213
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 129/291 (44%), Gaps = 60/291 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
KV+LS ++ V RQ+ LGDKFSS HGQKGV+G + E P
Sbjct: 941 KVMLSQTENESGVLKVQTRQT----RRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGV 996
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
++LE GK G +G + Y T F S V+ Q+
Sbjct: 997 TPDIIMNPHGFPSRMTVGKMLELLSGKAGVINGSLEYGTCFGGSNVDVM--------GQI 1048
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
L G SG F+ I L + F I +YQ+ HM +DK+
Sbjct: 1049 LIDNGFSYSGKDFV-------------TSGITGESLPAYVFFGPI-YYQKLKHMVQDKMH 1094
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--- 283
R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A+ +
Sbjct: 1095 SRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHQVDICE 1154
Query: 284 --RVVG-GPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKFDTQL 330
++G +C+ C S+ + +PY AKLL QE LS ++ + LK + +
Sbjct: 1155 TCGLMGYSGWCQTCKSSKGVSTMTMPYAAKLLVQEMLSMNVLVRLKLEDEF 1205
>gi|302348973|ref|YP_003816611.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
345-15]
gi|302329385|gb|ADL19580.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
345-15]
Length = 1179
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 148/368 (40%), Gaps = 95/368 (25%)
Query: 21 DNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAE-----------IGA----DHSIKLK 65
D+K Q ++ D + +++ GD+++G+ + +G D S++L+
Sbjct: 806 DHKGDQYYTKLGPDGIIEPEVEVDGGDVLVGRESPPRFLGEERVMSLGTLTKRDTSVQLR 865
Query: 66 HTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----- 120
+ E G+V VL++ D V +R + LGDKF+S HGQKGV+G L
Sbjct: 866 YGEHGVVDTVLITQTTDRNLLVKVKVRD----LRIPELGDKFASRHGQKGVVGMLYPKYD 921
Query: 121 ---------------------EQTPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQ 158
T Q+LE GK A + TPF +Q
Sbjct: 922 MPYTEDGIVPDIIINPHGIPSRMTVGQILELITGKAAAMEARYVDGTPFYKDD----VDQ 977
Query: 159 HQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFI 218
++ + KH + E D L+ + I + FYQ+
Sbjct: 978 YK-----------------IILIKHGYSPDGTEVMYDGRTG-QLLETPISIGVVFYQRLY 1019
Query: 219 HMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----- 273
HM DK+ R TG Q LT +P + R GG+ FGEM+ DCL+ HGA+ L +R+
Sbjct: 1020 HMVADKMHARATGKVQLLTRQPTEGKARQGGLRFGEMERDCLVGHGATMLLRDRMLDGSD 1079
Query: 274 --------KCKNVA------NVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFS 319
C +VA NV + C I DI VPY KL QE+ S
Sbjct: 1080 AYTMYVCTLCGHVAWYNSRKNVYE-------CPIHGENGDIKPVKVPYAFKLFLQEI-MS 1131
Query: 320 MGITLKFD 327
MGI + +
Sbjct: 1132 MGIKPRIE 1139
>gi|345498326|ref|XP_001607116.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Nasonia
vitripennis]
Length = 1135
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 144/342 (42%), Gaps = 72/342 (21%)
Query: 20 VDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIG-ADHSIKLKHTERGLVLKVLL 77
V NK + V KS PS + +G + G A+ + ++ K+ + KV++
Sbjct: 824 VSNKKVMVNKSTPS----------ANTGPVTTGSQAQTEYKNANLVYKNPVPAYIEKVMI 873
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ-------------- 122
SSN + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 874 SSNAEDAYLIKLLLRQT----RRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDSGICPDM 929
Query: 123 -----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
T +L+E GK G G Y T F G + + + VSQ
Sbjct: 930 IMNPHGFPSRMTVGKLIELLAGKAGVLKGKFHYGTAFG---GSKVEDVCEELVSQ----- 981
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G ++ K F + P+ ++ I++ +YQ+ HM +DK+ R
Sbjct: 982 -----GYNYLGKDIFYSGITGEPL---------QAYIYSGPVYYQKLKHMVQDKMHARAR 1027
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQR 284
G LT +P R + GG+ GEM+ DCLI +GAS L ERL +V N
Sbjct: 1028 GPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASMMLIERLMLSSDAFDVDVCNKCGL 1087
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ YC C S+ + +PY KLL QEL SM I +
Sbjct: 1088 MAYTGYCHSCRSSACVSTITMPYACKLLFQELQ-SMNIVPRL 1128
>gi|126722423|dbj|BAF48625.1| DNA-dependent RNA polymerase subunit B' [Natrinema versiforme]
Length = 435
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 117/266 (43%), Gaps = 39/266 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 177 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVIGHL 232
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + G D +++ +A P + G ++ + +L G R G F
Sbjct: 233 --APQEDMPFTEGGVVPDLVLNPHALPSRMTVGHIL----EMIGGKLGAMEGRRVDGTPF 286
Query: 180 IFKHY--FLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + L + D + + + IF + FYQ+ HM +K+ R+
Sbjct: 287 LGEDEDELRSGLEDSGFDSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 346
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 347 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICANCG 406
Query: 278 ---VANVIQRVVGGPYCRICNSADDI 300
V NV QR V YC C+ DI
Sbjct: 407 MSAVENVEQRRV---YCPNCDEETDI 429
>gi|225554621|gb|EEH02917.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
G186AR]
Length = 1227
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 150/344 (43%), Gaps = 72/344 (20%)
Query: 19 EVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLS 78
+V++ ++ + ++ L+ G S +G + A I + + KL + + KV++S
Sbjct: 908 KVNHGEVYINKVTPENALSSGITGSDAGRPI----AYIPSPQTYKL--PDPSYIDKVMIS 961
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ---------------- 122
+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 962 ATEAENQLIKVQTRQT----RVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGIVPDII 1017
Query: 123 ----------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA 172
T ++LE GK G++S + T+ GG E+ + +
Sbjct: 1018 MNPHGFPSRMTVGKMLELIAGKA---GILSGQFGYGTAFGGSPVEEMSAILV-------- 1066
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
+ G ++ K Y + P+ + +F +YQ+ HM +DK+ R G
Sbjct: 1067 -DHGFSYGGKDYLTSGITGEPLP---------AYVFMGPIYYQKLKHMVQDKMHSRARGP 1116
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVI 282
LT +P R R GG+ GEM+ DCLIA+G S L ERL C+N
Sbjct: 1117 RAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCENCG--F 1174
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +
Sbjct: 1175 MGYLG--WCQRCKTSRGVVKMVIPYAAKLLVQEL-FSMNVVARL 1215
>gi|221059854|ref|XP_002260572.1| DNA-directed RNA polymerase [Plasmodium knowlesi strain H]
gi|193810646|emb|CAQ42544.1| DNA-directed RNA polymerase, putative [Plasmodium knowlesi strain H]
Length = 1401
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 135/316 (42%), Gaps = 63/316 (19%)
Query: 44 KSGDIVIGKYAEIGA-DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFA 87
K G + I KY+ DH IK K + K++ + N +G
Sbjct: 1092 KEGQVYINKYSPRNVKDHVKDISKIDLNDLKANEIKYKSVYPSYIDKIIFTENAEGLKIY 1151
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATP 146
+ +RQ+ LGDKFSS HGQKGV+G L Q E+ G C L+
Sbjct: 1152 KIIMRQT----RLPELGDKFSSRHGQKGVVGLLVNQEDMPFTES----GICPDLIMNPHG 1203
Query: 147 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA-------F 199
F + + V +LL + ++++ + K+ +F P + +A F
Sbjct: 1204 FPS----------RMTVGKLLELVASKSAVLDGELKYGSIFS--GTPFEEMASILFKYGF 1251
Query: 200 ICLVRSLIFTWIT-------------FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 246
C + L+++ +T +YQ+ HM +DK+ R G Q LT +P R +
Sbjct: 1252 NCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSK 1311
Query: 247 FGGIEFGEMKCDCLIAHGASGNLHERLK-CKNVANV-IQRVVG----GPYCRICNSADDI 300
GG+ GEM+ DCLIA+G S L ERL +V +V I G YC C D
Sbjct: 1312 EGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCDVYICEDCGMMGYDTYCTFCQKCDKN 1371
Query: 301 IKANVPYGAKLLSQEL 316
+PY KLL QEL
Sbjct: 1372 ALVKMPYACKLLFQEL 1387
>gi|335438707|ref|ZP_08561443.1| DNA-directed RNA polymerase subunit B [Halorhabdus tiamatea SARL4B]
gi|334890829|gb|EGM29089.1| DNA-directed RNA polymerase subunit B [Halorhabdus tiamatea SARL4B]
Length = 608
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 128/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKG++G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDE----RIPELGDKFASRHGQKGIVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P Q + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQQDM-PFTEQGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 FI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + F+ + + + V + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEEDLRDSLEDHGFDSSGKEVMYSGITGEKVEAEIFVGTIFYQKLYHMVSNKIHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAALTLKERLLDESDQEWINVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C D+ + + Y KLL E+ ++GI + + +
Sbjct: 554 GMTAVENVDQRRV---YCPNCGEETDVHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|109104775|ref|XP_001114787.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
[Macaca mulatta]
Length = 449
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 161/399 (40%), Gaps = 96/399 (24%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D ++ + DD L F +
Sbjct: 73 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRILQKLDDDGLPFIGAK 132
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 133 LQYGDPYY-SYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 189
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 190 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 249
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQS--FVSQLLNCIGARNSGITFIFKHYFLFCLF 190
K A GL ATPF + +E++ + + ++L G G ++
Sbjct: 250 KSAALHGLCHDATPF------IFSEENSALEYFGEMLKAAGYNFYGTERLYSG---ISGL 300
Query: 191 ECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGI 250
E D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 301 ELEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGI 349
Query: 251 EFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP----------- 289
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 350 RFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRK 409
Query: 290 -YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 410 YNCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 447
>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
Length = 1175
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKS------RPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGFFRSVFYRSYKDSESKRIGEQEEQFEKPTRQTCSGMRHALYDKLDDDGIIS 856
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 857 PGVRVSGDDVVIGKTMTLPENEDELEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NEVMYNGHTGRK--------------INAQVFFGPTYYQRLKHMVDDKIHSRARGPLQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPSEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris striicornis]
Length = 1175
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 131/310 (42%), Gaps = 71/310 (22%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+++E G+V +V+L+ N +G F + +R V +GDKF+S HGQKG G
Sbjct: 892 DASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCG 947
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
E P L+E GK A G + ATPF +
Sbjct: 948 IQYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV 1007
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ +S LL G + G ++ + + + IF
Sbjct: 1008 -------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK--------------INAQIFLGP 1046
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC I+HGA+ L E
Sbjct: 1047 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 1106
Query: 272 RL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C +AN+ C+ C + I + +PY AKLL QEL
Sbjct: 1107 RLFEVSDPYRIHVCNLCGLIAIANLRNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL 1163
Query: 317 SFSMGITLKF 326
SM I +
Sbjct: 1164 -MSMNIAPRL 1172
>gi|195381659|ref|XP_002049565.1| GJ20682 [Drosophila virilis]
gi|194144362|gb|EDW60758.1| GJ20682 [Drosophila virilis]
Length = 1137
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 128/298 (42%), Gaps = 60/298 (20%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
I K E + +V++S+N + + +RQ+ +GDKFSS HGQKGV G +
Sbjct: 862 ISYKGPEPSYIERVMVSANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIV 917
Query: 121 --EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGGV 154
E P + LE GK G +G Y T F S
Sbjct: 918 DQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSKAAD 977
Query: 155 ITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFY 214
+ ++L+ G ++ K F + P++ + I++ +Y
Sbjct: 978 VQ-------AELVR------HGFNYMGKDLFYSGITGAPLE---------AYIYSGPVYY 1015
Query: 215 QQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK 274
Q+ HM +DK+ R G LT +P R R GG+ GEM+ DCLI++GAS + ERL
Sbjct: 1016 QKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM 1075
Query: 275 CK------NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+V R+ +C C S+ + K ++PY KLL QEL+ SM + K
Sbjct: 1076 ISSDAFEVDVCRTCGRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELT-SMNVVPKL 1132
>gi|443897388|dbj|GAC74729.1| RNA polymerase III, second largest subunit [Pseudozyma antarctica
T-34]
Length = 1158
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 125/280 (44%), Gaps = 59/280 (21%)
Query: 70 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ------- 122
G + +VL++ D + +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 890 GYIDQVLITDTDSDQTLIKALVRQT----RRPELGDKFSSRHGQKGVCGLIVQQEDMPFS 945
Query: 123 -------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSF 162
T +++E GK G G + Y T F GG E
Sbjct: 946 DRGINPDIIMNPHGFPSRMTVGKMIELLSGKAGVVTGTLQYGTAF----GGSQVED---- 997
Query: 163 VSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 222
+S+LL +G + K + P++ + ++ +YQ+ HM +
Sbjct: 998 MSRLLV-----ENGYNYAAKETLTSGITGQPLE---------AYVYFGPIYYQRLKHMVQ 1043
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI 282
DK+ R G LT +P R R GG+ GEM+ DCLI +GA+ L ERL + A +
Sbjct: 1044 DKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFTV 1103
Query: 283 ---QR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
QR ++G +C C+S+ +++ +PYG KL+ QEL
Sbjct: 1104 HACQRCGLMGYNGFCPYCSSSKHVVQLTIPYGTKLMLQEL 1143
>gi|317025401|ref|XP_001388998.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus niger CBS
513.88]
Length = 1226
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 126/292 (43%), Gaps = 62/292 (21%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------- 120
KV++S ++ V RQ+ +GDKFSS HGQKGV+G +
Sbjct: 956 KVMVSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGI 1011
Query: 121 -------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y T F G + E Q +
Sbjct: 1012 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFG---GSPVQEMSQILI--- 1065
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
++G ++ K Y + + + +FT +YQ+ HM +DK+
Sbjct: 1066 -------DNGFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMH 1109
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-- 284
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + I
Sbjct: 1110 SRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCE 1169
Query: 285 ---VVGG-PYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKFDTQL 330
+G +C+ C S+ ++K +PY AKLL QEL SM +T LK D +
Sbjct: 1170 QCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNVTARLKLDDEF 1220
>gi|389585547|dbj|GAB68277.1| DNA-directed RNA polymerase III subunit [Plasmodium cynomolgi strain
B]
Length = 1300
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 135/316 (42%), Gaps = 63/316 (19%)
Query: 44 KSGDIVIGKYAEIGA-DH---------------SIKLKHTERGLVLKVLLSSNDDGKNFA 87
K G + I KY+ DH +K K + K++ + N +G
Sbjct: 991 KEGQVYINKYSPRNVKDHVKDISKIDLNDLKSNEVKYKSVYPSYIDKIIFTENAEGLKIY 1050
Query: 88 VVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQTPAQLLEAALGKGACDGLMSYATP 146
+ +RQ+ LGDKFSS HGQKGV+G L Q E+ G C L+
Sbjct: 1051 KIIMRQT----RLPELGDKFSSRHGQKGVVGLLVNQEDMPFTES----GICPDLIMNPHG 1102
Query: 147 FATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA-------F 199
F + + V +LL + ++++ + K+ +F P + +A F
Sbjct: 1103 FPS----------RMTVGKLLELVASKSAVLDGELKYGSIFS--GTPFEEMASILFKYGF 1150
Query: 200 ICLVRSLIFTWIT-------------FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKR 246
C + L+++ +T +YQ+ HM +DK+ R G Q LT +P R +
Sbjct: 1151 NCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSK 1210
Query: 247 FGGIEFGEMKCDCLIAHGASGNLHERLK-CKNVANV-IQRVVG----GPYCRICNSADDI 300
GG+ GEM+ DCLIA+G S L ERL +V +V I G YC C D
Sbjct: 1211 EGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCDVYICEDCGMMGYDTYCTFCQKCDKN 1270
Query: 301 IKANVPYGAKLLSQEL 316
+PY KLL QEL
Sbjct: 1271 ALVKMPYACKLLFQEL 1286
>gi|154316380|ref|XP_001557511.1| hypothetical protein BC1G_04121 [Botryotinia fuckeliana B05.10]
Length = 450
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 129/291 (44%), Gaps = 60/291 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
KV+LS ++ V RQ+ LGDKFSS HGQKGV+G + E P
Sbjct: 178 KVMLSQTENESGVLKVQTRQT----RRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGV 233
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
++LE GK G +G + Y T F S V+ Q+
Sbjct: 234 TPDIIMNPHGFPSRMTVGKMLELLSGKAGVINGSLEYGTCFGGSNVDVM--------GQI 285
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
L G SG F+ I L + F I +YQ+ HM +DK+
Sbjct: 286 LIDNGFSYSGKDFV-------------TSGITGESLPAYVFFGPI-YYQKLKHMVQDKMH 331
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--- 283
R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A+ +
Sbjct: 332 SRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHQVDICE 391
Query: 284 --RVVG-GPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKFDTQL 330
++G +C+ C S+ + +PY AKLL QE LS ++ + LK + +
Sbjct: 392 TCGLMGYSGWCQTCKSSKGVSTMTMPYAAKLLVQEMLSMNVLVRLKLEDEF 442
>gi|385303538|gb|EIF47603.1| dna-directed rna polymerase iii 130 kda polypeptide, partial
[Dekkera bruxellensis AWRI1499]
Length = 312
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 127/291 (43%), Gaps = 66/291 (22%)
Query: 72 VLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---- 124
V +V+L+ D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 46 VDQVMLTVGDNDQALIKVLLRQT----RRPELGDKFSSRHGQKGVCGMIIKQEDMPFSDQ 101
Query: 125 -------------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVS 164
+++E GK G G Y T F S ++E + VS
Sbjct: 102 GICPDMIMNPHGFPSRMTVGKMMELVSGKAGVLRGTFEYGTCFGGSD---LSEMSKILVS 158
Query: 165 QLLNCIGARN---SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMS 221
+ N G ++ SG T +++ IF +YQ+ HM
Sbjct: 159 KGFN-YGGKDMLYSGTTGE---------------------ALQAYIFFGPIYYQKLKHMV 196
Query: 222 EDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANV 281
DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A
Sbjct: 197 LDKMHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAFD 256
Query: 282 IQRVVG------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ G +C +C S+ +++K +PY AKLL QEL SM I +
Sbjct: 257 VDICQGCGLMGYNGWCPMCKSSQNVVKMTIPYAAKLLFQEL-ISMNIAPRL 306
>gi|448627104|ref|ZP_21671779.1| DNA-directed RNA polymerase subunit B' [Haloarcula vallismortis
ATCC 29715]
gi|242392224|dbj|BAH80337.1| RNA polymerase subunit B' [Haloarcula vallismortis ATCC 29715]
gi|445759732|gb|EMA11008.1| DNA-directed RNA polymerase subunit B' [Haloarcula vallismortis
ATCC 29715]
Length = 608
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L E D + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEEELRGSLEEHGFDSSGKETMYSGVTGEKIDAEIFVGDIFYQKLYHMVSNKLHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 554 GMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|391870940|gb|EIT80109.1| RNA polymerase III, second largest subunit [Aspergillus oryzae
3.042]
Length = 1008
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 167/397 (42%), Gaps = 99/397 (24%)
Query: 1 MNQASLECGVFRSESYKAEVDN--------KDIQVKSR-------------PSDDMLNFG 39
+N+ S++ G R + +K V N KDI + SD + G
Sbjct: 628 LNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVG 687
Query: 40 KIQSKSGDIVIGKYAE--------IGADHSIKLKHTERGLVLK---------VLLSSNDD 82
+ Q +G++ I K G+D +K+T + K VL+S+ ++
Sbjct: 688 E-QVNAGEVYINKSTPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTEN 746
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ----------- 122
V RQ+ +GDKFSS HGQKGV+G F +Q
Sbjct: 747 ENQLIKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPH 802
Query: 123 ------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
T ++LE GK G G Y T F GG E+ +SQ+L +
Sbjct: 803 GFPSRMTVGKMLELVAGKAGVLAGQHGYGTCF----GGSPVEE----MSQILI-----DK 849
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ K Y + + + +FT +YQ+ HM +DK+ R G
Sbjct: 850 GFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMHSRARGPRAI 900
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQRVVGGPY-- 290
LT +P R R GG+ GEM+ DCLIA+G S L ERL ++ +V ++ Y
Sbjct: 901 LTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLN 960
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C S+ ++K +PY AKLL QEL SM +T +
Sbjct: 961 WCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNVTARL 996
>gi|156839387|ref|XP_001643385.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156113993|gb|EDO15527.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 1139
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 141/319 (44%), Gaps = 60/319 (18%)
Query: 41 IQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHS 100
+ + SG+ V+ + + + E + +V++S +D+ + V +RQ+
Sbjct: 840 VPTNSGEGVLANTQAQYKETPVIYRAPEPSRIDQVMMSVSDNDQALIKVLLRQN----RR 895
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
LGDKFSS HGQKGV G + E P +++E GK
Sbjct: 896 PELGDKFSSRHGQKGVCGIIVNHEDMPFNDDGISPDIIMNPHGFPSRMTVGKMIELVSGK 955
Query: 135 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
G +G + Y T F GG E +S++L G SG ++ CL
Sbjct: 956 AGVLNGSLEYGTCF----GGSKLED----MSRILVDKGFNYSGKDMLYSGITGECL---- 1003
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
++ IF +YQ+ HM DK+ R G LT +P R R GG+ G
Sbjct: 1004 ----------QAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1053
Query: 254 EMKCDCLIAHGASGNLHERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPY 307
EM+ DC+IA+GAS L ERL + A +V + ++G +C C SA+ K +PY
Sbjct: 1054 EMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWCSTCKSAEHNNKMTIPY 1113
Query: 308 GAKLLSQELSFSMGITLKF 326
AKLL QEL SM I +
Sbjct: 1114 AAKLLFQEL-LSMNIAPRL 1131
>gi|259489446|tpe|CBF89725.1| TPA: DNA-directed RNA polymerase III, beta subunit, putative
(AFU_orthologue; AFUA_1G02460) [Aspergillus nidulans FGSC
A4]
Length = 1225
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 127/286 (44%), Gaps = 60/286 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ-- 122
KV++S+ ++ V RQ+ +GDKFSS HGQKGV G F +Q
Sbjct: 955 KVMISATENENQIIKVLTRQT----RRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGI 1010
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y T F+ G + + Q+ +
Sbjct: 1011 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFS---GTPVEQMTQTLI--- 1064
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ K Y + + + +FT +YQ+ HM +DK+
Sbjct: 1065 -------DKGFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMH 1108
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQ 283
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL ++ +V +
Sbjct: 1109 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1168
Query: 284 RVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ Y C+ C S+ ++K +PY AKLL QEL SM +T +
Sbjct: 1169 QCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQEL-MSMNVTARL 1213
>gi|317139935|ref|XP_001817863.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus oryzae
RIB40]
Length = 1218
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 149/345 (43%), Gaps = 78/345 (22%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSIKLKHTERGLVLK--------- 74
SD + G+ Q +G++ I K G+D +K+T + K
Sbjct: 890 SDGLAAVGE-QVNAGEVYINKSTPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQ 948
Query: 75 VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ--- 122
VL+S+ ++ V RQ+ +GDKFSS HGQKGV+G F +Q
Sbjct: 949 VLVSTTENENQLIKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGIN 1004
Query: 123 --------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
T ++LE GK G G Y T F GG E+ +SQ+L
Sbjct: 1005 PDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCF----GGSPVEE----MSQIL 1056
Query: 168 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
+ G ++ K Y + + + +FT +YQ+ HM +DK+
Sbjct: 1057 I-----DKGFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMHS 1102
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR--- 284
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + I
Sbjct: 1103 RARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQ 1162
Query: 285 --VVGG-PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C S+ ++K +PY AKLL QEL SM +T +
Sbjct: 1163 CGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNVTARL 1206
>gi|448664666|ref|ZP_21684304.1| DNA-directed RNA polymerase subunit B' [Haloarcula amylolytica JCM
13557]
gi|242392316|dbj|BAH80331.1| RNA polymerase subunit B' [Haloarcula amylolytica]
gi|445774253|gb|EMA25274.1| DNA-directed RNA polymerase subunit B' [Haloarcula amylolytica JCM
13557]
Length = 608
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L E D + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEEELRGSLEEHGFDSSGKETMYSGVTGEKIDAEIFVGDIFYQKLYHMVSNKLHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 554 GMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|388858433|emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
hordei]
Length = 1169
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 119/282 (42%), Gaps = 63/282 (22%)
Query: 70 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-- 124
G V +VL++ D + IRQ+ LGDKFSS HGQKGV G + E P
Sbjct: 901 GYVDQVLITDTDSDQTLIKALIRQT----RRPELGDKFSSRHGQKGVCGLIVNQEDMPFS 956
Query: 125 ---------------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSF 162
+++E GK G G + Y T F G + + Q
Sbjct: 957 DQGINPDIIMNPHGFPSRMTVGKMIELLSGKAGVITGNLQYGTAFG---GSKVEDMSQIL 1013
Query: 163 VSQLLNCIGARN--SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHM 220
V N G SGIT EC ++ +YQ+ HM
Sbjct: 1014 VDHGYNYGGKETLTSGITG--------QPLEC-------------YVYFGPIYYQRLKHM 1052
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVAN 280
+DK+ R G LT +P R R GG+ GEM+ DCLI +GA+ L ERL + A
Sbjct: 1053 VQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAF 1112
Query: 281 VI---QR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ QR ++G +C C S ++K +PYG KL+ QEL
Sbjct: 1113 TVHACQRCGLMGYNGWCPFCGSGKHVVKLTIPYGTKLMLQEL 1154
>gi|325094900|gb|EGC48210.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 1227
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 126/289 (43%), Gaps = 66/289 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 957 KVMISATEAENQLIKVQTRQT----RVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGI 1012
Query: 123 ---------------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
T ++LE GK G++S + T+ GG E+ + +
Sbjct: 1013 VPDIIMNPHGFPSRMTVGKMLELIAGKA---GILSGQFGYGTAFGGSPVEEMSAILV--- 1066
Query: 168 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
+ G ++ K Y + P+ + +F +YQ+ HM +DK+
Sbjct: 1067 ------DHGFSYGGKDYLTSGITGEPLP---------AYVFMGPIYYQKLKHMVQDKMHS 1111
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN 277
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL C+N
Sbjct: 1112 RARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCEN 1171
Query: 278 VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +
Sbjct: 1172 CG--FMGYLG--WCQRCKTSRGVVKMVIPYAAKLLVQEL-FSMNVVARL 1215
>gi|261194511|ref|XP_002623660.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
SLH14081]
gi|239588198|gb|EEQ70841.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
SLH14081]
Length = 1204
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 151/342 (44%), Gaps = 68/342 (19%)
Query: 19 EVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLS 78
+V+ ++ + ++ L+ G S +G + A I + + KL + + KV++S
Sbjct: 885 KVNQGEVYINKVTPENALSSGITGSDAGRPI----AYIPSPQTYKL--PDPSYIDKVMIS 938
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ---------------- 122
+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 939 ATEAENQLIKVQTRQT----RVPEVGDKFSSRHGQKGVVGIIAEYADMPFSDLGIVPDII 994
Query: 123 ----------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA 172
T ++LE GK G++S + T+ GG E+ + +
Sbjct: 995 MNPHGFPSRMTVGKMLELIAGKA---GILSGQFGYGTAFGGSPVEEMSAILV-------- 1043
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
+ G ++ K Y + P+ + +F +YQ+ HM +DK+ R G
Sbjct: 1044 -DHGFSYGGKDYLTSGITGEPLP---------AYVFMGPIYYQKLKHMVQDKMHSRARGP 1093
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQR----- 284
LT +P R R GG+ GEM+ DCLIA+G S L ERL ++ +V +
Sbjct: 1094 RAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCESCGFMG 1153
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +
Sbjct: 1154 YLG--WCQRCKTSRGVVKMVIPYAAKLLVQEL-FSMNVVARL 1192
>gi|240276965|gb|EER40475.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 1227
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 126/289 (43%), Gaps = 66/289 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV++S+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 957 KVMISATEAENQLIKVQTRQT----RVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGI 1012
Query: 123 ---------------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
T ++LE GK G++S + T+ GG E+ + +
Sbjct: 1013 VPDIIMNPHGFPSRMTVGKMLELIAGKA---GILSGQFGYGTAFGGSPVEEMSAILV--- 1066
Query: 168 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
+ G ++ K Y + P+ + +F +YQ+ HM +DK+
Sbjct: 1067 ------DHGFSYGGKDYLTSGITGEPLP---------AYVFMGPIYYQKLKHMVQDKMHS 1111
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLK----------CKN 277
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL C+N
Sbjct: 1112 RARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCEN 1171
Query: 278 VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +
Sbjct: 1172 CG--FMGYLG--WCQRCKTSRGVVKMVIPYAAKLLVQEL-FSMNVVARL 1215
>gi|115396768|ref|XP_001214023.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114193592|gb|EAU35292.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 1219
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 58/285 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ-- 122
+VLLS ++ V RQ+ +GDKFSS HGQKGV+G F +Q
Sbjct: 949 QVLLSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGI 1004
Query: 123 ---------------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
T ++LE GK G++S + T GG E+ +SQ+L
Sbjct: 1005 NPDIIMNPHGFPSRMTVGKMLELVAGKA---GVLSGQHGYGTCFGGSPVEE----MSQIL 1057
Query: 168 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
+ G ++ K Y + + + +FT +YQ+ HM +DK+
Sbjct: 1058 I-----DKGFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMHS 1103
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQR 284
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL ++ +V ++
Sbjct: 1104 RARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEK 1163
Query: 285 VVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y C+ C S+ ++K +PY AKLL QEL SM +T +
Sbjct: 1164 CGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQEL-MSMNVTARL 1207
>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
nigrotuberculatum]
Length = 1177
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 130/310 (41%), Gaps = 71/310 (22%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+++E GL+ +VLL+ N +G F + +R +GDKF+S HGQKG G
Sbjct: 893 DCSTFLRNSETGLIDQVLLTLNSEGYKFCKIRVRSE----RIPQIGDKFASRHGQKGTCG 948
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
E P L+E GK A G + ATPF +
Sbjct: 949 IQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV 1008
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ +S LL G + G ++ + + + +F
Sbjct: 1009 -------NVQKISTLLQEYGYQLRGNEVMYNGFSGRK--------------INAQVFLGP 1047
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IAHGA+ L E
Sbjct: 1048 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRE 1107
Query: 272 RL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C +AN+ C+ C + I + +PY AKLL QEL
Sbjct: 1108 RLFEVSDPYRIHICNFCGLIAIANLRNNTFE---CKGCKNKTQISQVKLPYAAKLLFQEL 1164
Query: 317 SFSMGITLKF 326
SM I +
Sbjct: 1165 -MSMNIAPRL 1173
>gi|239613518|gb|EEQ90505.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
ER-3]
gi|327357033|gb|EGE85890.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1228
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 151/342 (44%), Gaps = 68/342 (19%)
Query: 19 EVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLS 78
+V+ ++ + ++ L+ G S +G + A I + + KL + + KV++S
Sbjct: 909 KVNQGEVYINKVTPENALSSGITGSDAGRPI----AYIPSPQTYKL--PDPSYIDKVMIS 962
Query: 79 SNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ---------------- 122
+ + V RQ+ +GDKFSS HGQKGV+G + +
Sbjct: 963 ATEAENQLIKVQTRQT----RVPEVGDKFSSRHGQKGVVGIIAEYADMPFSDLGIVPDII 1018
Query: 123 ----------TPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGA 172
T ++LE GK G++S + T+ GG E+ + +
Sbjct: 1019 MNPHGFPSRMTVGKMLELIAGKA---GILSGQFGYGTAFGGSPVEEMSAILV-------- 1067
Query: 173 RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGS 232
+ G ++ K Y + P+ + +F +YQ+ HM +DK+ R G
Sbjct: 1068 -DHGFSYGGKDYLTSGITGEPLP---------AYVFMGPIYYQKLKHMVQDKMHSRARGP 1117
Query: 233 FQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQR----- 284
LT +P R R GG+ GEM+ DCLIA+G S L ERL ++ +V +
Sbjct: 1118 RAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCESCGFMG 1177
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C ++ ++K +PY AKLL QEL FSM + +
Sbjct: 1178 YLG--WCQRCKTSRGVVKMVIPYAAKLLVQEL-FSMNVVARL 1216
>gi|134055102|emb|CAK43742.1| unnamed protein product [Aspergillus niger]
Length = 1225
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 126/292 (43%), Gaps = 62/292 (21%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------- 120
KV++S ++ V RQ+ +GDKFSS HGQKGV+G +
Sbjct: 955 KVMVSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGI 1010
Query: 121 -------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y T F G + E Q +
Sbjct: 1011 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFG---GSPVQEMSQILI--- 1064
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
++G ++ K Y + + + +FT +YQ+ HM +DK+
Sbjct: 1065 -------DNGFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMH 1108
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-- 284
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + I
Sbjct: 1109 SRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCE 1168
Query: 285 ---VVGG-PYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKFDTQL 330
+G +C+ C S+ ++K +PY AKLL QEL SM +T LK D +
Sbjct: 1169 QCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNVTARLKLDDEF 1219
>gi|242392292|dbj|BAH80339.1| RNA polymerase subunit B' [Halobacterium salinarum]
Length = 608
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG A VS+R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDE----RIPELGDKFASRHGQKGVVGHL 380
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P +LE GK G+ DG TPF
Sbjct: 381 APQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVDGTPF------ 434
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
T + + + L G ++SG ++ + + IF F
Sbjct: 435 --TGEGEDEIRGTLEDRGFKSSGKEVMYSG--------------VSGEKIEAEIFVGTIF 478
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
Y + HM +K+ R+ G Q LT +P R R GG+ GEM+ D +I HGA+ L ERL
Sbjct: 479 YHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLKERL 538
Query: 274 ----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
C N V N QR V YC C D+ + Y KLL E+
Sbjct: 539 LDSSDREEIHVCGNCGMTAVENYEQRRV---YCPNCEEETDVHSIEMSYAFKLLLDEMK- 594
Query: 319 SMGITLKFDTQ 329
++GI + + +
Sbjct: 595 ALGIAPRLELE 605
>gi|145512048|ref|XP_001441946.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409207|emb|CAK74549.1| unnamed protein product [Paramecium tetraurelia]
Length = 1214
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 131/313 (41%), Gaps = 75/313 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ + ERG+V VL+S N G V +R + +GDKF S HGQKG G
Sbjct: 923 SLLTRRAERGVVDSVLISENQKGYKLVKVKVRS----LRIPQIGDKFCSRHGQKGTCGMT 978
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P L+E K + G + ATPFA
Sbjct: 979 YRQEDLPYTLVGISPDLTINPHCIPSRMTIGHLIECLSSKLASIKGQFNDATPFAQILVN 1038
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
I + L+ +G + G + + + +F P IF T+
Sbjct: 1039 DIANE--------LHKVGWQKWG-NEVMTNPYTGNMFSIP-------------IFVGPTY 1076
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
YQ+ H+ +DK+ R+ G +T +P R R GG+ FGEM+ DC+I+HG + L ER
Sbjct: 1077 YQRLRHLVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKERT 1136
Query: 274 -------------KCK--NVANVIQRVVGGPYCRIC---NSADDIIKANVPYGAKLLSQE 315
KC VAN+ + YC +C N+ + I + +PY AK L QE
Sbjct: 1137 YDVSDAFRVHVCSKCGMFAVANLENQEF---YCNLCKNQNNQNKIYQVQMPYAAKTLIQE 1193
Query: 316 L-SFSMGITLKFD 327
L S ++ LKFD
Sbjct: 1194 LISMNIAPRLKFD 1206
>gi|448494508|ref|ZP_21609495.1| DNA-directed RNA polymerase subunit B' [Halorubrum californiensis
DSM 19288]
gi|445689343|gb|ELZ41583.1| DNA-directed RNA polymerase subunit B' [Halorubrum californiensis
DSM 19288]
Length = 609
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDQ----RVPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +M+ +A P + G V+ + ++ + G+R G F
Sbjct: 382 --APQEDMPFTEEGVVPDLVMNPHALPSRMTVGHVL----EMLGGKVGSLRGSRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ FE + + + + + IF FY + HM +K+ R+
Sbjct: 436 QGEDEEELRDQLEEHGFESSGKEVMYSGVTGEKIDAEIFVGTIFYHKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------- 282
G Q LT +P R R GG+ GEM+ D +I HGAS L+ERL + A +
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRVGEMERDTIIGHGASMVLNERLLESSDAETVHVSAETG 555
Query: 283 --------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
QR V Y + DDI + V Y KLL E+ ++GI K + +
Sbjct: 556 LVAVEDREQRRV---YDPVTGDEDDIHELEVSYAFKLLLDEM-IALGIRPKLELE 606
>gi|15791389|ref|NP_281213.1| DNA-directed RNA polymerase subunit B' [Halobacterium sp. NRC-1]
gi|169237150|ref|YP_001690350.1| DNA-directed RNA polymerase subunit B' [Halobacterium salinarum R1]
gi|338819303|sp|B0R8D5.1|RPOB1_HALS3 RecName: Full=DNA-directed RNA polymerase subunit B'
gi|338819304|sp|P0CX03.1|RPOB1_HALSA RecName: Full=DNA-directed RNA polymerase subunit B'
gi|43541|emb|CAA40425.1| RNA polymerase subunit B' [Halobacterium salinarum]
gi|10582044|gb|AAG20693.1| DNA-directed RNA polymerase subunit B' [Halobacterium sp. NRC-1]
gi|167728216|emb|CAP15004.1| DNA-directed RNA polymerase subunit B' [Halobacterium salinarum R1]
Length = 608
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG A VS+R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDE----RIPELGDKFASRHGQKGVVGHL 380
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P +LE GK G+ DG TPF
Sbjct: 381 APQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVDGTPF------ 434
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
T + + + L G ++SG ++ + + IF F
Sbjct: 435 --TGEGEDEIRGTLEDRGFKSSGKEVMYSG--------------VSGEKIEAEIFVGTIF 478
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
Y + HM +K+ R+ G Q LT +P R R GG+ GEM+ D +I HGA+ L ERL
Sbjct: 479 YHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLKERL 538
Query: 274 ----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
C N V N QR V YC C D+ + Y KLL E+
Sbjct: 539 LDSSDREEIHVCGNCGMTAVENYEQRRV---YCPNCEEETDVHSIEMSYAFKLLLDEMK- 594
Query: 319 SMGITLKFDTQ 329
++GI + + +
Sbjct: 595 ALGIAPRLELE 605
>gi|342179780|emb|CCC89254.1| putative DNA-directed RNA polymerase III [Trypanosoma congolense
IL3000]
Length = 1137
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 142/335 (42%), Gaps = 39/335 (11%)
Query: 36 LNFGKIQSKSG-----DIVIGKYAEIGA----DHSIKLKHTERGLVLKVLLSSNDDGKNF 86
LN I SK DI++ KY + + + + K+ + +V V++S D
Sbjct: 810 LNSDGIASKGAIVRQFDILVNKYTPVPSLEPRPNPLVYKYPQPAVVDHVVISPPGDSDRS 869
Query: 87 AVVS--IRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYA 144
V I+ V GDKFSS HGQKGV+G + +G C ++
Sbjct: 870 MDVEQKIKVVTREVRIPEPGDKFSSRHGQKGVVGLITDGVNMPFNE---QGICPDMIMNP 926
Query: 145 TPFATS-TGGVITEQHQSFVSQLLNCIGARNSGITF-----------IFKHYFLFCLFEC 192
F + T G + E S VS L G G F + +H F + +
Sbjct: 927 HGFPSRMTVGKLLELVSSKVSALTGRFG---DGTAFGGDKAEDMGEELLRHGFNYHGKDV 983
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
I L + F I +YQ+ HM DKV R TG LT +P R R GG+
Sbjct: 984 FYSGITGEKLHGHVFFGPI-YYQRLKHMVTDKVHARATGPRSMLTRQPTEGRSRNGGLRV 1042
Query: 253 GEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG----GPYCRICNSADDIIKANVP 306
GEM+ DC++ +GAS L+ERL + + R G YC C++ + + + NVP
Sbjct: 1043 GEMERDCMVGYGASKLLYERLLVSSDLFTVDICRSCGFLGYSGYCSYCSTRNSVSRVNVP 1102
Query: 307 YGAKLLSQELS---FSMGITLKFDTQLSGVSMAAV 338
Y KLL QEL S +TL F SG S V
Sbjct: 1103 YAFKLLLQELQGMGISARLTLDFIGPQSGSSNEVV 1137
>gi|353239819|emb|CCA71715.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit,
partial [Piriformospora indica DSM 11827]
Length = 410
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 143/341 (41%), Gaps = 71/341 (20%)
Query: 22 NKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAE--IGADHSIKLKHTERGLVLKVLLSS 79
N++I+ K+ +D + + G ++ GD I Y + G IK K E G + V L
Sbjct: 24 NEEIR-KTIDTDGLPSVG-VKVNPGD-PIAAYEDDTTGRTRIIKYKGDETGYIDTVRLIG 80
Query: 80 NDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ-------- 122
D G + + I ++ + S +GDKFSS HGQKGV + F E
Sbjct: 81 GDAG-DTELQKIHVTIRITRSPVIGDKFSSRHGQKGVCSQKWPSVDMPFSESGIQPDVII 139
Query: 123 ---------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLL----N 168
T +E+ GK GA GL ATPF S + F QLL N
Sbjct: 140 NPHAFPSRMTIGMFVESMAGKAGAMHGLAQDATPFQFSEDDTAIDY---FGKQLLAAGYN 196
Query: 169 CIGARN--SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
G SGIT E D I+ + +YQ+ HM DK +
Sbjct: 197 YYGNEPMYSGITG----------EEFAAD-----------IYLGVVYYQRLRHMVLDKYQ 235
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANVIQRV 285
R TG P+T +PV RKR GGI FGEM+ D LIAHG S L +RL C + +
Sbjct: 236 VRTTGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYSTAW--- 292
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
CR C S + +V G +L+ F G + ++
Sbjct: 293 ----VCRTCGSLISLGYEDVSVGGELIGSSSHFPTGPSGEY 329
>gi|358366889|dbj|GAA83509.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
kawachii IFO 4308]
Length = 1233
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 126/292 (43%), Gaps = 62/292 (21%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------- 120
KV++S ++ V RQ+ +GDKFSS HGQKGV+G +
Sbjct: 963 KVMVSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGI 1018
Query: 121 -------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y T F G + E Q +
Sbjct: 1019 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFG---GSPVQEMSQILI--- 1072
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
++G ++ K Y + + + +FT +YQ+ HM +DK+
Sbjct: 1073 -------DNGFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMH 1116
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-- 284
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + I
Sbjct: 1117 SRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCE 1176
Query: 285 ---VVGG-PYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKFDTQL 330
+G +C+ C S+ ++K +PY AKLL QEL SM +T LK D +
Sbjct: 1177 QCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNVTARLKLDDEF 1227
>gi|242392286|dbj|BAH80380.1| RNA polymerase subunit B' [Halorubrum xinjiangense]
Length = 609
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDQ----RVPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +M+ +A P + G V+ + ++ + G+R G F
Sbjct: 382 --APQEDMPFTEEGVVPDLVMNPHALPSRMTVGHVL----EMLGGKVGSLRGSRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ FE + + + + + IF FY + HM +K+ R+
Sbjct: 436 QGEDEEELRDQLEEHGFESSGKEVMYSGVTGEKIDAEIFVGTIFYHKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------- 282
G Q LT +P R R GG+ GEM+ D +I HGAS L+ERL + A +
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRVGEMERDTIIGHGASMVLNERLLESSDAETVHVSAETG 555
Query: 283 --------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
QR V Y + DDI + V Y KLL E+ ++GI K + +
Sbjct: 556 LVAVEDREQRRV---YDPVTGDEDDIHELEVSYAFKLLLDEM-IALGIRPKLELE 606
>gi|209489360|gb|ACI49130.1| hypothetical protein Cbre_JD16.002 [Caenorhabditis brenneri]
gi|341883892|gb|EGT39827.1| hypothetical protein CAEBREN_00456 [Caenorhabditis brenneri]
Length = 1152
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 126/302 (41%), Gaps = 60/302 (19%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ K +VLL+ N++ + V +RQ+ LGDKFSS HGQKGV G
Sbjct: 872 DVSVTYKTPTPSYAERVLLTYNEEEAHLFKVLLRQT----RRPELGDKFSSRHGQKGVCG 927
Query: 119 FLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATST 151
+ Q T +L+E GK G +G Y T F
Sbjct: 928 LIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVMNGTYHYGTAFGGDQ 987
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ E+ + AR G ++ K + P+ + I+
Sbjct: 988 VKDVCEE-----------LAAR--GYNYMGKDMLTSGITGQPLS---------AYIYFGP 1025
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLIA+GAS L E
Sbjct: 1026 IYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIE 1085
Query: 272 RLKCKNVANVIQR-----VVGGP-YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
RL + + V+G +C+ C S+ + +PY KLL QEL SM I +
Sbjct: 1086 RLMVSSDEFKVDVCTGCGVIGSKGWCQKCRSSKSMANIKIPYACKLLFQELQ-SMNIVPR 1144
Query: 326 FD 327
D
Sbjct: 1145 LD 1146
>gi|401825637|ref|XP_003886913.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
gi|392998070|gb|AFM97932.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
Length = 1046
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 156/368 (42%), Gaps = 70/368 (19%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEI-GAD 59
+++ S++ G+F YK E K K R +L G+ K +V+ +Y + G +
Sbjct: 707 ISKNSIDRGLFTGYIYKTE---KVSLEKGRYFTHLLPVGERIEKG--LVLYRYVDQEGRE 761
Query: 60 HSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGV--- 116
+ K E G++ V + ND G+ A +IR +V + +GDKFSS HGQKGV
Sbjct: 762 YESKYFEAEGGVIDSVRVFDNDSGERCATFTIR----IVRNPSIGDKFSSRHGQKGVCSM 817
Query: 117 ------LGFLEQ-----------------TPAQLLEAALGKGAC-DGLMSYATPFATSTG 152
+ F E T L+E+ GK C G + T F
Sbjct: 818 NWPTVDMPFTESGYVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNVQDGTAFER--- 874
Query: 153 GVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWIT 212
G+++ + + + L C + G + PM +R IF +
Sbjct: 875 GLLSGEDEKNRRKELLCKELQEHGFNYYGNE---------PMYSGISGNELRVDIFVGVV 925
Query: 213 FYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER 272
+YQ+ HM DK + R G+ T +PV RK+ GGI FGEM+ D LI+HGAS L +R
Sbjct: 926 YYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKQGGIRFGEMERDALISHGASHLLQDR 985
Query: 273 -LKCKNVANVIQRVVGGPYCRICNS------------ADDIIKANVPYGAKLLSQELSFS 319
LKC + YC C S + D+ +PY K L EL +
Sbjct: 986 LLKCSDGTMF-------EYCGTCKSILFTNNGDCICGSSDLKTVEMPYVFKYLCYEL-LA 1037
Query: 320 MGITLKFD 327
M I +K D
Sbjct: 1038 MNIRVKID 1045
>gi|71026390|ref|XP_762870.1| DNA-directed RNA polymerase III subunit [Theileria parva strain
Muguga]
gi|68349822|gb|EAN30587.1| DNA-directed RNA polymerase III subunit, putative [Theileria parva]
Length = 1244
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 141/329 (42%), Gaps = 55/329 (16%)
Query: 25 IQVKSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSI---KLKHTERGLVLKVLLSSND 81
I K+ P+D N G + K D K + G D K G + +V+L+ N
Sbjct: 920 ISTKAPPTDFTTN-GSMNGKGTD----KNQKTGNDDKYIVNKYNLNTGGCIDRVILTENY 974
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ------------------- 122
+G + +RQS +GDKFSS HGQKGV+G + +
Sbjct: 975 NGNKMYKIMVRQS----RPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNP 1030
Query: 123 -------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
T +LLE K + G +TPF+ S + + L N +
Sbjct: 1031 HGFPSRMTVGKLLELVASKSSVFSGNFVDSTPFSNSYS-------DNLCNDLNNSGSNKM 1083
Query: 175 SGI-TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSF 233
S I + K+ F E I+ + +LIF +YQ+ HM DK+ R G
Sbjct: 1084 SDICDILIKNGFHPKGKEILYSGISG-NPINTLIFIGPIYYQRLKHMVTDKIHARGRGPR 1142
Query: 234 QPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVG------ 287
QP+T +P R R GG+ GEM+ DCLIA+G+S L ERL + I+
Sbjct: 1143 QPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLLVERLMLSSDVFNIEVCSSCGFMGY 1202
Query: 288 GPYCRICNSADDIIKANVPYGAKLLSQEL 316
+C+ C + + + + ++PY KLL QEL
Sbjct: 1203 NNFCKFCQN-NSLAQVSLPYACKLLFQEL 1230
>gi|380017785|ref|XP_003692825.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Apis florea]
Length = 1134
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 152/343 (44%), Gaps = 73/343 (21%)
Query: 20 VDNKDIQV-KSRPSDDM--LNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVL 76
V+N+ + V KS P+ ++ +N G +Q+++ +Y ++ + K + KV+
Sbjct: 822 VENRKVMVNKSSPAANIGPVNSGNVQTQT------EYKDV----PVVFKGPVPAYIEKVM 871
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ------------- 122
+SSN + + +RQ+ +GDKFSS HGQKGV+G + EQ
Sbjct: 872 ISSNAEDAFLIKLLLRQT----RRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDYGICPD 927
Query: 123 ------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 169
T +L+E GK G G Y T F S + + S+L+
Sbjct: 928 MIMNPHGFPSRMTVGKLIELLAGKAGVIKGEFHYGTAFGGS-------KVEDVCSELVK- 979
Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
G ++ K +F + P+ ++ I++ +YQ+ HM +DK+ R
Sbjct: 980 -----HGFNYLGKDFFYSGITGEPL---------QAYIYSGPVYYQKLKHMVQDKMHARA 1025
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQ 283
G LT +P R + GG+ GEM+ DCLI +GAS L ERL +V N
Sbjct: 1026 RGPRAVLTRQPTGGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDVCNKCG 1085
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ + ++PY KLL QEL SM I +
Sbjct: 1086 LMAYSGWCHSCRSSSCVSTISMPYACKLLFQELQ-SMNIVPRL 1127
>gi|355565994|gb|EHH22423.1| hypothetical protein EGK_05684 [Macaca mulatta]
Length = 1039
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D ++ + DD L F +
Sbjct: 663 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRILQKLDDDGLPFIGAK 722
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 723 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 779
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 780 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESIAG 839
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 840 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 892
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 893 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 941
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 942 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1001
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1002 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1038
>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
Length = 1176
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 164/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSESKKIGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGLRVSGDDVVIGKTITLPETDDDLDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK G+ G + ATPF + + +S L G + G
Sbjct: 974 IPSRMTIGHLIECIQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYQLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANM 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL +M I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVKLPYAAKLLFQEL-MAMNIAPRL 1173
>gi|448680459|ref|ZP_21690776.1| DNA-directed RNA polymerase subunit B' [Haloarcula argentinensis
DSM 12282]
gi|242392318|dbj|BAH80332.1| RNA polymerase subunit B' [Haloarcula argentinensis DSM 12282]
gi|445768903|gb|EMA19980.1| DNA-directed RNA polymerase subunit B' [Haloarcula argentinensis
DSM 12282]
Length = 608
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L E D + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEDELRGSLEEHGFDSSGKETMYSGVTGEKIDAEIFVGDIFYQKLYHMVSNKLHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 554 GMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|119497281|ref|XP_001265400.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
181]
gi|119413562|gb|EAW23503.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
181]
Length = 1200
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 140/340 (41%), Gaps = 78/340 (22%)
Query: 42 QSKSGDIVIGKYAE-------IGADHSIKLKHT---------ERGLVLKVLLSSNDDGKN 85
Q +G++ I K IG+D +++T + + KV+ S ++
Sbjct: 882 QVNAGEVYINKSTPEQSNLSGIGSDAGRPVQYTPTPMTYKLHDPAYIDKVMYSVQENENQ 941
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------- 120
V +RQ+ +GDKFSS HGQKGV+G +
Sbjct: 942 LVKVLVRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDAGINPDIIMNPHGFP 997
Query: 121 -EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
T ++LE GK G G Y T F GG E+ + G ++ +
Sbjct: 998 SRMTVGKMLELVAGKAGVLAGHHGYGTCF----GGTPVEEASRILIDHGFSYGGKDYLTS 1053
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
I F +F P+ +YQ+ HM +DK+ R G LT
Sbjct: 1054 GITGEALPFYVFTGPI------------------YYQKLKHMVQDKMHSRARGPRAILTR 1095
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-----VVGG-PYCR 292
+P R R GG+ GEM+ DCLIA+G S L ERL + + I +G +C+
Sbjct: 1096 QPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQ 1155
Query: 293 ICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKFDTQL 330
C S+ ++K +PY AKLL QEL SM +T LK D +
Sbjct: 1156 RCKSSRSVVKMTIPYAAKLLIQEL-MSMNVTARLKLDDEF 1194
>gi|70990294|ref|XP_749996.1| DNA-directed RNA polymerase III, beta subunit [Aspergillus fumigatus
Af293]
gi|66847628|gb|EAL87958.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
fumigatus Af293]
gi|159130477|gb|EDP55590.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
fumigatus A1163]
Length = 1200
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 140/340 (41%), Gaps = 78/340 (22%)
Query: 42 QSKSGDIVIGKYAE-------IGADHSIKLKHT---------ERGLVLKVLLSSNDDGKN 85
Q +G++ I K IG+D +++T + + KV+ S ++
Sbjct: 882 QVNAGEVYINKSTPEQSNLSGIGSDAGRPVQYTPTPMTYKLHDPAYIDKVMYSVQENENQ 941
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------- 120
V +RQ+ +GDKFSS HGQKGV+G +
Sbjct: 942 LVKVLVRQT----RRPEVGDKFSSRHGQKGVVGIIADQVDMPFTDSGINPDIIMNPHGFP 997
Query: 121 -EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
T ++LE GK G G Y T F GG E+ + G ++ +
Sbjct: 998 SRMTVGKMLELVAGKAGVLAGHHGYGTCF----GGTPVEEASRVLIDHGFSYGGKDYLTS 1053
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
I F +F P+ +YQ+ HM +DK+ R G LT
Sbjct: 1054 GITGEALPFYVFTGPI------------------YYQKLKHMVQDKMHSRARGPRAILTR 1095
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-----VVGG-PYCR 292
+P R R GG+ GEM+ DCLIA+G S L ERL + + I +G +C+
Sbjct: 1096 QPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQ 1155
Query: 293 ICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKFDTQL 330
C S+ ++K +PY AKLL QEL SM +T LK D +
Sbjct: 1156 RCKSSRSVVKMTIPYAAKLLIQEL-MSMNVTARLKLDDEF 1194
>gi|350638131|gb|EHA26487.1| hypothetical protein ASPNIDRAFT_171679 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 126/292 (43%), Gaps = 62/292 (21%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------- 120
KV++S ++ V RQ+ +GDKFSS HGQKGV+G +
Sbjct: 931 KVMVSVTENENQLVKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGI 986
Query: 121 -------------EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y T F G + E Q +
Sbjct: 987 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFG---GSPVQEMSQILI--- 1040
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
++G ++ K Y + + + +FT +YQ+ HM +DK+
Sbjct: 1041 -------DNGFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMH 1084
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-- 284
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + I
Sbjct: 1085 SRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCE 1144
Query: 285 ---VVGG-PYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT--LKFDTQL 330
+G +C+ C S+ ++K +PY AKLL QEL SM +T LK D +
Sbjct: 1145 QCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNVTARLKLDDEF 1195
>gi|51035537|emb|CAH10904.1| RNA polymerase B subunit [Haloterrigena sp. GSL-11]
Length = 435
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 114/266 (42%), Gaps = 39/266 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 177 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 232
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 233 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 286
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 287 LGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 346
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 347 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 406
Query: 278 ---VANVIQRVVGGPYCRICNSADDI 300
V NV QR V YC C+ DI
Sbjct: 407 MSAVENVEQRRV---YCPNCDEETDI 429
>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Metaseiulus occidentalis]
Length = 1178
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 148/364 (40%), Gaps = 74/364 (20%)
Query: 8 CGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGK---IQSKSGDIVIGKYAEIGADHSIKL 64
C R+ Y D+ I +R S D + GK + D+ D S L
Sbjct: 836 CQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLDSTNKRYSKRDASTFL 895
Query: 65 KHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---E 121
+++E G+V +V+L+ N DG F + +R V +GDKF+S HGQKG G E
Sbjct: 896 RNSETGIVDQVMLTINSDGYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGVTYRQE 951
Query: 122 QTP-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITE 157
P L+E GK A + G + ATPF +
Sbjct: 952 DMPFTVEGLTPDIIINPHAIPSRMTIGHLIECLQGKVASNKGEIGDATPFNDAV------ 1005
Query: 158 QHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQF 217
+ +S +L G G ++ + V + IF T+YQ+
Sbjct: 1006 -NVQKISNILMEYGYHLRGNEVMYNGHTGRK--------------VNAQIFLGPTYYQRL 1050
Query: 218 IHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN 277
HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC I+HGA+ L ERL +
Sbjct: 1051 KHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFFAS 1110
Query: 278 ---------------VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
+AN+ + C+ C + I + +PY KLL QEL SM I
Sbjct: 1111 DPYRTHICNICGLIAIANLRNNIFE---CKGCRNKTQISQITLPYACKLLFQEL-MSMNI 1166
Query: 323 TLKF 326
+
Sbjct: 1167 APRM 1170
>gi|55379096|ref|YP_136946.1| DNA-directed RNA polymerase subunit B' [Haloarcula marismortui ATCC
43049]
gi|448638074|ref|ZP_21676125.1| DNA-directed RNA polymerase subunit B' [Haloarcula sinaiiensis ATCC
33800]
gi|55231821|gb|AAV47240.1| DNA-directed RNA polymerase beta subunit [Haloarcula marismortui
ATCC 43049]
gi|242392410|dbj|BAH80412.1| RNA polymerase subunit B' [Haloarcula sinaiiensis ATCC 33800]
gi|445763960|gb|EMA15134.1| DNA-directed RNA polymerase subunit B' [Haloarcula sinaiiensis ATCC
33800]
Length = 608
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L E D + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEDELRGSLEEHGFDSSGKETMYSGVTGEKIDAEIFVGDIFYQKLYHMVSNKLHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 554 GMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|238483555|ref|XP_002373016.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
flavus NRRL3357]
gi|220701066|gb|EED57404.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
flavus NRRL3357]
Length = 1218
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 149/345 (43%), Gaps = 78/345 (22%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYAE--------IGADHSIKLKHTERGLVLK--------- 74
SD + G+ Q +G++ I K G+D +K+T + K
Sbjct: 890 SDGLAAVGE-QVNAGEVYINKSTPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQ 948
Query: 75 VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ--- 122
VL+S+ ++ V RQ+ +GDKFSS HGQKGV+G F +Q
Sbjct: 949 VLVSTTENENQLIKVLTRQT----RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGIN 1004
Query: 123 --------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLL 167
T ++LE GK G G Y T F GG E+ +SQ+L
Sbjct: 1005 PDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCF----GGSPVEE----MSQIL 1056
Query: 168 NCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
+ G ++ K Y + + + +FT +YQ+ HM +DK+
Sbjct: 1057 I-----DKGFSYGGKDYLTSGITGEALPF---------YVFTGPIYYQKLKHMVQDKMHS 1102
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR--- 284
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL + + I
Sbjct: 1103 RARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQ 1162
Query: 285 --VVGG-PYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+G +C+ C S+ ++K +PY AKLL QEL SM +T +
Sbjct: 1163 CGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQEL-MSMNVTARL 1206
>gi|156059482|ref|XP_001595664.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980]
gi|154701540|gb|EDO01279.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1230
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 129/291 (44%), Gaps = 60/291 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
KV+LS ++ V RQ+ LGDKFSS HGQKGV+G + E P
Sbjct: 958 KVMLSQTENESTVLKVQTRQT----RRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGV 1013
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
++LE GK G +G + Y T F S V+ ++
Sbjct: 1014 TPDIIMNPHGFPSRMTVGKMLELLSGKAGVVNGSLEYGTCFGGSNVDVM--------GKI 1065
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
L G SG F+ I L + F I +YQ+ HM +DK+
Sbjct: 1066 LIDKGFSYSGKDFV-------------TSGITGESLPAYVFFGPI-YYQKLKHMVQDKMH 1111
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--- 283
R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A+ +
Sbjct: 1112 SRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHEVDICE 1171
Query: 284 --RVVG-GPYCRICNSADDIIKANVPYGAKLLSQE-LSFSMGITLKFDTQL 330
++G +C+ C S+ + +PY AKLL QE LS ++ + LK + +
Sbjct: 1172 TCGLMGYSGWCQTCKSSKGVSTMTMPYAAKLLVQEMLSMNVLVRLKLEDEF 1222
>gi|51035543|emb|CAH10907.1| RNA polymerase B subunit [Natrinema pallidum]
Length = 435
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 114/266 (42%), Gaps = 39/266 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 177 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 232
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 233 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 286
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 287 LGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 346
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 347 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 406
Query: 278 ---VANVIQRVVGGPYCRICNSADDI 300
V NV QR V YC C+ DI
Sbjct: 407 MSAVENVEQRRV---YCPNCDEETDI 429
>gi|67516079|ref|XP_657925.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
gi|40746571|gb|EAA65727.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
Length = 1656
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 127/286 (44%), Gaps = 60/286 (20%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ-- 122
KV++S+ ++ V RQ+ +GDKFSS HGQKGV G F +Q
Sbjct: 1386 KVMISATENENQIIKVLTRQT----RRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGI 1441
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T ++LE GK G G Y T F +G + + Q+ + +
Sbjct: 1442 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCF---SGTPVEQMTQTLIDKG 1498
Query: 167 LNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
+ G ++ + I F +F P+ +YQ+ HM +DK+
Sbjct: 1499 FSY-GGKDYLTSGITGEALPFYVFTGPI------------------YYQKLKHMVQDKMH 1539
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKC---KNVANVIQ 283
R G LT +P R R GG+ GEM+ DCLIA+G S L ERL ++ +V +
Sbjct: 1540 SRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCE 1599
Query: 284 RVVGGPY---CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ Y C+ C S+ ++K +PY AKLL QEL SM +T +
Sbjct: 1600 QCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQEL-MSMNVTARL 1644
>gi|83765718|dbj|BAE55861.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1180
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 137/312 (43%), Gaps = 69/312 (22%)
Query: 57 GADHSIKLKHTERGLVLK---------VLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKF 107
G+D +K+T + K VL+S+ ++ V RQ+ +GDKF
Sbjct: 884 GSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQT----RRPEVGDKF 939
Query: 108 SSMHGQKGVLG---------FLEQ-----------------TPAQLLEAALGK-GACDGL 140
SS HGQKGV+G F +Q T ++LE GK G G
Sbjct: 940 SSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQ 999
Query: 141 MSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFI 200
Y T F GG E+ +SQ+L + G ++ K Y + + +
Sbjct: 1000 HGYGTCF----GGSPVEE----MSQILI-----DKGFSYGGKDYLTSGITGEALPF---- 1042
Query: 201 CLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCL 260
+FT +YQ+ HM +DK+ R G LT +P R R GG+ GEM+ DCL
Sbjct: 1043 -----YVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCL 1097
Query: 261 IAHGASGNLHERLKCKNVANVIQR-----VVGG-PYCRICNSADDIIKANVPYGAKLLSQ 314
IA+G S L ERL + + I +G +C+ C S+ ++K +PY AKLL Q
Sbjct: 1098 IAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVVKMAIPYAAKLLIQ 1157
Query: 315 ELSFSMGITLKF 326
EL SM +T +
Sbjct: 1158 EL-MSMNVTARL 1168
>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
Length = 1176
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 162/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 798 LNASAVERGYFRSCFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAMYDKLDDDGIIT 857
Query: 39 GKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDDG 83
++ D+VIGK + D S L+++E G V +V+L+ N +G
Sbjct: 858 PGVRVSGDDVVIGKTITLPDTDDDLEGTTRRFTKRDASTFLRNSETGCVDQVMLTLNAEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 973
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL G G
Sbjct: 974 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISTLLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NELMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>gi|256811203|ref|YP_003128572.1| DNA-directed RNA polymerase subunit B' [Methanocaldococcus fervens
AG86]
gi|256794403|gb|ACV25072.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus fervens
AG86]
Length = 633
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 143/347 (41%), Gaps = 89/347 (25%)
Query: 44 KSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GD+++GK + EI D S+ ++H E G + KV+L+ +G
Sbjct: 291 KGGDVIVGKTSPPRFLEEHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVK 350
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ----------------- 122
V +R + LGDKF+S HGQKGV+G F E
Sbjct: 351 VKVRD----LRVPELGDKFASRHGQKGVIGLTVPQEDLPFTESGIVPDIIINPHAIPSRM 406
Query: 123 TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
T QLLE GK GA +G G + + + + + + L +G +N G ++
Sbjct: 407 TVGQLLEMLGGKVGALEG--------RRIDGTIFSGEKEWDLRKALEALGFKNHGKEVMY 458
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
FE I+ I +YQ+ H+ K+ R+ G Q LT +P
Sbjct: 459 DGK-TGKKFEVE-------------IYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPT 504
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 288
R R GG+ FGEM+ D LI HGA+ L ERL KC + A ++
Sbjct: 505 EGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFA-ILDYKRNL 563
Query: 289 PYCRICNSADDIIKAN------VPYGAKLLSQELSFSMGITLKFDTQ 329
YC IC +++ + +PY KLL EL SM I K +
Sbjct: 564 KYCPICGEIENLYNSKKIPFVRLPYAFKLLLDELK-SMCILPKIKVK 609
>gi|242392326|dbj|BAH80336.1| RNA polymerase subunit B' [Haloarcula quadrata]
Length = 608
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L E D + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEDELRGSLEEHGFDSSGKETMYSGVTGEKIDAEIFVGDIFYQKLYHMVSNKLHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 554 GMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|55728623|emb|CAH91052.1| hypothetical protein [Pongo abelii]
Length = 1135
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G +YK+E + D ++ + DD L F +
Sbjct: 759 VNKASWERGFAHGSAYKSEFIDLSEKIKQGDSSLVFGMKPGDPRILQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKACSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHGATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|448655084|ref|ZP_21681936.1| DNA-directed RNA polymerase subunit B' [Haloarcula californiae ATCC
33799]
gi|242392320|dbj|BAH80333.1| RNA polymerase subunit B' [Haloarcula californiae]
gi|445765533|gb|EMA16671.1| DNA-directed RNA polymerase subunit B' [Haloarcula californiae ATCC
33799]
Length = 608
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 FI--FKHYFLFCLFECPMDWIAFICL--------VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + L E D + + + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEDELRGSLEEHGFDSSGKETMYSGVTGEKIDAEIFVGDIFYQKLYHMVSNKLHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 554 GMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|219852749|ref|YP_002467181.1| DNA-directed RNA polymerase subunit B' [Methanosphaerula palustris
E1-9c]
gi|219547008|gb|ACL17458.1| RNA polymerase Rpb2 domain 6 [Methanosphaerula palustris E1-9c]
Length = 604
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 146/351 (41%), Gaps = 49/351 (13%)
Query: 8 CGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGK------IQSKSGDIVIGKYAEIGADHS 61
G E YK D+ I ++ S+ + GK ++ S D++ E D S
Sbjct: 265 TGAHGEEYYKNLDDDGIINPETTVSEKDVLIGKTSPPRFLEEPSSDLIT---VEKRRDTS 321
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE 121
+ ++ E G+V V+++ ++ V R +GDKF+S HGQKGV+G +
Sbjct: 322 VTMRSNEHGIVDTVIITEGENSSRLVKVRTRDP----RIPEIGDKFASRHGQKGVIGLI- 376
Query: 122 QTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
P + + D +++ P A + I + ++ + G R +G F
Sbjct: 377 -APQEDMPFTESGMVPDIVIN---PHAIPSRMTIGHMLEMIGGKVGSLEGRRINGTAFSG 432
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWIT-------------FYQQFIHMSEDKVKFR 228
+ L + F R +++ +T +YQ+ HM K+ R
Sbjct: 433 E---LEADLRSSLKKFGFSPTGREVMYDGLTGKRFTADIYVGVIYYQKLYHMVSSKMHAR 489
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ FGEM+ D +I HGA+ L ERL KC
Sbjct: 490 SRGPVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMALKERLLDESDKVQQYVCAKC 549
Query: 276 KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
VA ++ R C +C S DI + Y KLL E+ SMGI +
Sbjct: 550 GMVA-MLDRKRNTTRCLVCGSETDIYYVEMSYAFKLLLDEMK-SMGIAPRM 598
>gi|126722419|dbj|BAF48623.1| DNA-dependent RNA polymerase subunit B' [Natrinema sp. XA3-1]
Length = 435
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 114/266 (42%), Gaps = 39/266 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G L
Sbjct: 177 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHL 232
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
Q E + L +A P + G ++ + +L + G R G F
Sbjct: 233 APQEDMPFTEEGVVPDLV--LNPHALPSRMTVGHIL----EMIGGKLGSMEGRRVDGTPF 286
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ + F+ + + + + IF + FYQ+ HM +K+ R+
Sbjct: 287 LGEDEDELRQGLEDAGFDSAGKETMYSGISGEKIEAEIFVGVIFYQKLYHMVSNKLHARS 346
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-- 277
G Q LT +P R R GG+ GEM+ D I HGA+ L ERL C N
Sbjct: 347 RGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHVCANCG 406
Query: 278 ---VANVIQRVVGGPYCRICNSADDI 300
V NV QR V YC C+ DI
Sbjct: 407 MSAVENVEQRRV---YCPNCDEETDI 429
>gi|207457737|ref|NP_001128800.1| DNA-directed RNA polymerase I subunit RPA2 [Pongo abelii]
Length = 1135
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D ++ + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGMKPGDPRILQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|116199389|ref|XP_001225506.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
gi|88179129|gb|EAQ86597.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
Length = 1155
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 36/280 (12%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP----AQ 126
KV++S+ + + V RQ+ LGDKFSS HGQKGV+G + E P
Sbjct: 885 KVMISNTEKNTSIVKVQTRQT----RRPELGDKFSSRHGQKGVVGIIADQEDMPFSDSGL 940
Query: 127 LLEAALGKGACDGLMSYATPFATSTG--GVITEQHQ-----SFVSQLLNCIGAR--NSGI 177
+ + + M+ F TG V+ + +F S + +G G
Sbjct: 941 VPDIIMNPHGFPSRMTVGKLFECLTGKASVVAGERDYGFGDAFRSHPVEEMGKVLVEHGF 1000
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ K YF + P + + +F +YQ+ HM +DK+ R+ G LT
Sbjct: 1001 SWEGKDYFTSGITGEPHE---------AYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILT 1051
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQ--RVVG----GPYC 291
+P R R GG+ GEM+ DCLIA+GAS L ERL + + + G +C
Sbjct: 1052 RQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTQVDICELCGLLGYKGFC 1111
Query: 292 RICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQL 330
+ C S + + +PY AKLL QEL S ++G+ ++ + +
Sbjct: 1112 QTCGSTSQVTQMTMPYAAKLLVQELISMNVGVRMQLEDKF 1151
>gi|367035314|ref|XP_003666939.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
42464]
gi|347014212|gb|AEO61694.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
42464]
Length = 1155
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 138/291 (47%), Gaps = 30/291 (10%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
I + + + KV++S+ + KN A++ ++ LGDKFSS HGQKGV+G +
Sbjct: 872 PINYRIPDPAYIDKVMVSNTE--KNTAIIKVQ--TRQTRRPELGDKFSSRHGQKGVVGII 927
Query: 121 -EQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
+Q ++ L D +M+ P + + + + + G R+ G
Sbjct: 928 VDQEDMPFSDSGL---VPDIIMN---PHGFPSRMTVGKLFECLTGKASVVAGRRDYGFGD 981
Query: 180 IFKHYFL----FCLFECPMDWIA---FICLV-----RSLIFTWITFYQQFIHMSEDKVKF 227
F+ + + L E W F + + +F +YQ+ HM +DK+
Sbjct: 982 AFRSHPVEEMGRVLIEHGFSWEGKDYFTSGITGEPHEAYLFNGPIYYQRLKHMVQDKMHS 1041
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---VANVIQR 284
R+ G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + ++ +R
Sbjct: 1042 RSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTQVDICER 1101
Query: 285 --VVGGP-YCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQLS 331
++G +C+ C S + + +PY AKLL QEL S ++G+ ++ + +
Sbjct: 1102 CGLLGYKGFCQTCGSTSQVTQMTMPYAAKLLVQELISMNVGVRMQLEDKFP 1152
>gi|448482812|ref|ZP_21605583.1| DNA-directed RNA polymerase subunit B' [Halorubrum arcis JCM 13916]
gi|242392260|dbj|BAH80367.1| RNA polymerase subunit B' [Halorubrum arcis JCM 13916]
gi|445821098|gb|EMA70894.1| DNA-directed RNA polymerase subunit B' [Halorubrum arcis JCM 13916]
Length = 609
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDQ----RVPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +M+ +A P + G V+ + ++ + G+R G F
Sbjct: 382 --APQEDMPFTEEGVVPDLVMNPHALPSRMTVGHVL----EMLGGKVGSLRGSRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ FE + + + + + IF FY + HM +K+ R+
Sbjct: 436 QGEDEEELRGQLEEYGFESSGKEVMYSGVTGEKIDAEIFVGTIFYHKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------- 282
G Q LT +P R R GG+ GEM+ D +I HGAS L+ERL + A +
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRVGEMERDTIIGHGASMVLNERLLESSDAETVHVSAETG 555
Query: 283 --------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
QR V Y + DDI + V Y KLL E+ ++GI K + +
Sbjct: 556 LVAVEDREQRRV---YDPVTGDEDDIHELEVSYAFKLLLDEM-IALGIRPKLELE 606
>gi|448497567|ref|ZP_21610520.1| DNA-directed RNA polymerase subunit B' [Halorubrum coriense DSM
10284]
gi|445699798|gb|ELZ51818.1| DNA-directed RNA polymerase subunit B' [Halorubrum coriense DSM
10284]
Length = 609
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDQ----RVPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +M+ +A P + G V+ + ++ + G+R G F
Sbjct: 382 --APQEDMPFTEEGVVPDLVMNPHALPSRMTVGHVL----EMLGGKVGSLRGSRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ FE + + + + + IF FY + HM +K+ R+
Sbjct: 436 QGEDEEELRGQLEEYGFESSGKEVMYSGVTGEKIDAEIFVGTIFYHKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------- 282
G Q LT +P R R GG+ GEM+ D +I HGAS L+ERL + A +
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRVGEMERDTIIGHGASMVLNERLLESSDAETVHVSAETG 555
Query: 283 --------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
QR V Y + DDI + V Y KLL E+ ++GI K + +
Sbjct: 556 LVAVEDREQRRV---YDPVTGDEDDIHELEVSYAFKLLLDEM-IALGIRPKLELE 606
>gi|300120856|emb|CBK21098.2| unnamed protein product [Blastocystis hominis]
gi|300175006|emb|CBK20317.2| unnamed protein product [Blastocystis hominis]
Length = 1151
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 157/405 (38%), Gaps = 97/405 (23%)
Query: 1 MNQASLECGVFRSESYKAE----VDNKDIQVKS----RPSDDMLNFGKIQS--------- 43
+N++S E G + YK+ VD KD KS RP + + +
Sbjct: 760 LNKSSFERGFAHASVYKSHDIDLVDPKDPATKSLIFKRPPREAIASSNPSALRLDPDGLP 819
Query: 44 ------KSGDIVIGKYAEIGADHSIKLKHT-ERGLVLKVLLSSNDDGKNFAVVSIRQSVN 96
+ GD + Y S++ + E V +V + D V+I+ N
Sbjct: 820 PIGLFVQKGDAICAVYNTETGKTSLRFHDSSEPAYVDEVRILDGDPALGVQRVNIKFRYN 879
Query: 97 MVHSACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEA 130
+ +GDKFSS HGQKGVL L T L+E+
Sbjct: 880 --RNPVVGDKFSSRHGQKGVLSVLWPQIDMPFTASGITPDCIINPNAFPSRMTIGMLIES 937
Query: 131 ALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCL 189
GK GA G ATPF S + F + L G F +Y L
Sbjct: 938 MAGKSGALHGQYMDATPFQFSEKQCAVD----FFGEQLKAAG---------FNYYGSEPL 984
Query: 190 FECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGG 249
+ + L+ + I+ + +YQ+ HM DK + R G LT +P+ RKR GG
Sbjct: 985 YSG-----IWGDLLEADIYIGVVYYQRLRHMVSDKSQVRANGPINQLTRQPLKGRKRHGG 1039
Query: 250 IEFGEMKCDCLIAHGASGNLHERL-------------KCKNV------------ANVIQR 284
I FGEM+ D +IAHGAS LHERL KC ++ A +
Sbjct: 1040 IRFGEMERDSIIAHGASFLLHERLLNSSDRHLAVICDKCGSMLSATAKPMTQQEAATLSS 1099
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V C +C ++ +PY + L EL+ +M I + FD +
Sbjct: 1100 RVPKMVCHVCKTSTTCHLVPMPYVTRYLVNELA-AMNIKVAFDVE 1143
>gi|224967092|ref|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus musculus]
gi|341941989|sp|P70700.2|RPA2_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=DNA-directed RNA
polymerase I 135 kDa polypeptide; Short=RPA135
gi|74137985|dbj|BAE25401.1| unnamed protein product [Mus musculus]
gi|74194733|dbj|BAE25971.1| unnamed protein product [Mus musculus]
gi|148696280|gb|EDL28227.1| RNA polymerase 1-2 [Mus musculus]
Length = 1135
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 154/397 (38%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G + K E +V + + SND G F + I +V + +
Sbjct: 819 LEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICI--TVRIPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 937 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGMELE 989
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 990 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+C +D I +VPY + EL+ +M I +K D
Sbjct: 1099 TVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
Length = 1175
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 132/310 (42%), Gaps = 71/310 (22%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S L+++E G+V +V+L+ N +G F + +R V +GDKF+S HGQKG G
Sbjct: 892 DASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS----VRIPQIGDKFASRHGQKGTCG 947
Query: 119 FL---EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATST 151
E P L+E GK + + G + ATPF +
Sbjct: 948 IQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV 1007
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
+ +S LL G + G ++ + + + +F
Sbjct: 1008 -------NVQKISTLLQEYGYQLRGNEVMYNGHTGRK--------------INAQVFLGP 1046
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
T+YQ+ HM +DK+ R G Q L +P+ R R GG+ FGEM+ DC IAHGA+ L E
Sbjct: 1047 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRE 1106
Query: 272 RL----------KCK-----NVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
RL C +AN+ C+ C + I + +PY AKLL QEL
Sbjct: 1107 RLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL 1163
Query: 317 SFSMGITLKF 326
+M I +
Sbjct: 1164 -MAMNIAPRL 1172
>gi|448427502|ref|ZP_21583817.1| DNA-directed RNA polymerase subunit B' [Halorubrum terrestre JCM
10247]
gi|448451260|ref|ZP_21592743.1| DNA-directed RNA polymerase subunit B' [Halorubrum litoreum JCM
13561]
gi|448513826|ref|ZP_21616757.1| DNA-directed RNA polymerase subunit B' [Halorubrum distributum JCM
9100]
gi|448526664|ref|ZP_21619933.1| DNA-directed RNA polymerase subunit B' [Halorubrum distributum JCM
10118]
gi|242392264|dbj|BAH80369.1| RNA polymerase subunit B' [Halorubrum distributum]
gi|242392270|dbj|BAH80372.1| RNA polymerase subunit B' [Halorubrum litoreum]
gi|242392278|dbj|BAH80376.1| RNA polymerase subunit B' [Halorubrum terrestre]
gi|445678189|gb|ELZ30683.1| DNA-directed RNA polymerase subunit B' [Halorubrum terrestre JCM
10247]
gi|445692979|gb|ELZ45142.1| DNA-directed RNA polymerase subunit B' [Halorubrum distributum JCM
9100]
gi|445698891|gb|ELZ50929.1| DNA-directed RNA polymerase subunit B' [Halorubrum distributum JCM
10118]
gi|445810694|gb|EMA60710.1| DNA-directed RNA polymerase subunit B' [Halorubrum litoreum JCM
13561]
Length = 609
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDQ----RVPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +M+ +A P + G V+ + ++ + G+R G F
Sbjct: 382 --APQEDMPFTEEGVVPDLVMNPHALPSRMTVGHVL----EMLGGKVGSLRGSRVDGTPF 435
Query: 180 I------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFRN 229
+ FE + + + + + IF FY + HM +K+ R+
Sbjct: 436 QGEDEEELRGQLEEYGFESSGKEVMYSGVTGEKIDAEIFVGTIFYHKLYHMVSNKLHARS 495
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------- 282
G Q LT +P R R GG+ GEM+ D +I HGAS L+ERL + A +
Sbjct: 496 RGPVQVLTRQPTEGRAREGGLRVGEMERDTIIGHGASMVLNERLLESSDAETVHVSAETG 555
Query: 283 --------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
QR V Y + DDI + V Y KLL E+ ++GI K + +
Sbjct: 556 LVAVEDREQRRV---YDPVTGDEDDIHELEVSYAFKLLLDEM-IALGIRPKLELE 606
>gi|397779347|ref|YP_006543820.1| DNA-directed RNA polymerase subunit B' [Methanoculleus bourgensis
MS2]
gi|396937849|emb|CCJ35104.1| DNA-directed RNA polymerase subunit B' [Methanoculleus bourgensis
MS2]
Length = 604
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 126/288 (43%), Gaps = 28/288 (9%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D S+ ++ ERG+V V+++ ++ V R + +GDKF+S HGQKGV+G
Sbjct: 319 DTSVTMRSNERGIVDTVIITEGENSSRLVKVRTRD----LRVPEVGDKFASRHGQKGVIG 374
Query: 119 FLEQTPAQLLEAALGKGACDGLMSYATPFATSTGGVITE---QHQSFVSQLLNCI---GA 172
+ Q A + G + +A P + G ++ + S + +N G
Sbjct: 375 LI-QPSADMPFTESGMTPDLIINPHAVPSRMTIGHMLEMLGGKVGSLEGRRINATAFRGE 433
Query: 173 RNSGITFIFKHY-FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTG 231
R + + K F E D I + I+ + +YQ+ HM K+ R+ G
Sbjct: 434 READLRRSLKELGFSHDGREVMYDGITGRRFA-ADIYIGVIYYQKLYHMVSSKMHARSRG 492
Query: 232 SFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNV 278
Q LT +P R R GG+ FGEM+ D +I HGA+ L ERL KC V
Sbjct: 493 PVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMALKERLLDESDKVTQWVCAKCGMV 552
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
A ++ R C C S DI + Y KLL E+ SMGI +
Sbjct: 553 A-MLDRKRKITRCLACGSETDIYPVEMSYAFKLLLDEMK-SMGIAPRL 598
>gi|66517310|ref|XP_625037.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
[Apis mellifera]
Length = 1134
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 149/343 (43%), Gaps = 73/343 (21%)
Query: 20 VDNKDIQV-KSRPSDDM--LNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVL 76
V+N+ + V KS P+ ++ +N G +Q+++ +Y ++ + K + KV+
Sbjct: 822 VENRKVMVNKSSPAANIGPVNSGNVQTQT------EYKDV----PVVFKGPVPAYIEKVM 871
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ------------- 122
+SSN + + +RQ+ +GDKFSS HGQKGV+G + EQ
Sbjct: 872 ISSNAEDAFLIKLLLRQT----RRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDYGICPD 927
Query: 123 ------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 169
T +L+E GK G G Y T F GG E C
Sbjct: 928 MIMNPHGFPSRMTVGKLIELLAGKAGVIKGEFHYGTAF----GGSKVED---------VC 974
Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
G ++ K +F + P+ ++ I++ +YQ+ HM +DK+ R
Sbjct: 975 AELVKHGFNYLGKDFFYSGITGEPL---------QAYIYSGPVYYQKLKHMVQDKMHARA 1025
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQ 283
G LT +P R + GG+ GEM+ DCLI +GAS L ERL +V N
Sbjct: 1026 RGPRAVLTRQPTGGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDVCNKCG 1085
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ + ++PY KLL QEL SM I +
Sbjct: 1086 LMAYSGWCHSCRSSSCVSTISMPYACKLLFQELQ-SMNIVPRL 1127
>gi|38614338|gb|AAH60656.1| Polymerase (RNA) I polypeptide B [Mus musculus]
Length = 1135
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 154/397 (38%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G + K E +V + + SND G F + I +V + +
Sbjct: 819 LEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICI--TVRIPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 937 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGMELE 989
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 990 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+C +D I +VPY + EL+ +M I +K D
Sbjct: 1099 TVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>gi|326429748|gb|EGD75318.1| RNA polymerase II [Salpingoeca sp. ATCC 50818]
Length = 1139
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 119/279 (42%), Gaps = 58/279 (20%)
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
+N+ ++ IR V LGDKFSS HGQKGV G + E P
Sbjct: 881 ENYMIIKIR--VRSTRIPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGVCPDMIMNPHG 938
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
+L+E GK A G +Y T F GG E+ C + G
Sbjct: 939 FPSRMTVGKLMELVGGKAAVLSGNFNYGTAF----GGTPLEEM---------CETLVDHG 985
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ K + + P++ + IF +YQ+ HM DK+ R TG L
Sbjct: 986 YNYHGKEFLTSGITGEPLE---------AYIFFGPVYYQKLKHMVMDKMHARATGPITLL 1036
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR-----VVG-GPY 290
T +P R R GG+ GEM+ DCLI HG S L ERL + A + ++G +
Sbjct: 1037 TRQPTEGRSRQGGLRLGEMERDCLIGHGTSMLLLERLMVSSDAFEVTACSKCGLLGYAGW 1096
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
C+ C S+ ++ K +PY KLL QEL SM I + Q
Sbjct: 1097 CQYCKSSANVCKLELPYACKLLFQELQ-SMNIVPRLTLQ 1134
>gi|58268448|ref|XP_571380.1| DNA-directed RNA polymerase i polypeptide 2 [Cryptococcus neoformans
var. neoformans JEC21]
gi|134112740|ref|XP_774913.1| hypothetical protein CNBF0780 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257561|gb|EAL20266.1| hypothetical protein CNBF0780 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227615|gb|AAW44073.1| DNA-directed RNA polymerase i polypeptide 2, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1193
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 166/418 (39%), Gaps = 114/418 (27%)
Query: 1 MNQASLECGVFRSESYKAEV-DNKDIQVKSRPSDDMLNFG------------KIQSKSGD 47
+N+++ E G YKA++ D K + SR + L+FG I S+ G
Sbjct: 791 LNKSAHERGFGYGTVYKADIFDLKGVPGASRSAKPTLHFGLGRDVKEDHDARNIISQDGL 850
Query: 48 IVIGKYAEIG------ADHSI------KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSV 95
+IG + G D + K K E + +V + +D G + + I +
Sbjct: 851 PIIGTRVKAGDPLCAYIDDTTGRTKFHKYKGDETAFIDEVRVLGSDAG-DAELQKIHIKL 909
Query: 96 NMVHSACLGDKFSSMHGQKGV---------LGFLEQ-----------------TPAQLLE 129
+ S +GDKFSS HGQKGV + F E T +E
Sbjct: 910 RIPRSPVIGDKFSSRHGQKGVCSQKFPAIDMPFSESGMQPDVIINPHAFPSRMTIGMFVE 969
Query: 130 AALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFC 188
+ GK GA GL ATPF S ++ + + L G G
Sbjct: 970 SMAGKAGALHGLAQDATPFKFSD----KDRPVDYFGEQLRAAGYNYYG------------ 1013
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
PM + I+ + +YQ+ HM DK + R TG PLT +PV RKR G
Sbjct: 1014 --NEPMYSGITGEEFHADIYLGLVYYQRLRHMVNDKFQVRTTGPVDPLTRQPVKGRKRAG 1071
Query: 249 GIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVIQ---RVVGGP-----Y 290
GI FGEM+ D LIAHG S L +RL C+N +++ VGG Y
Sbjct: 1072 GIRFGEMERDALIAHGTSFLLQDRLMNCSDYSTAWVCRNCGSLVSLGFEEVGGAQGMQEY 1131
Query: 291 CRICNS-----ADDIIKAN-------------------VPYGAKLLSQELSFSMGITL 324
CRIC+ A+++ K N VPY + L E++ MGI L
Sbjct: 1132 CRICDGHKHEHAEEMSKENGVGVVMRGGEKKGRMDVVPVPYVFRYLCAEMA-CMGIKL 1188
>gi|71013466|ref|XP_758593.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
gi|46098251|gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
Length = 1169
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 120/280 (42%), Gaps = 59/280 (21%)
Query: 70 GLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ------- 122
G + +VL++ D + IRQ+ LGDKFSS HGQKGV G + Q
Sbjct: 901 GYIDQVLITDTDSDQTLIKALIRQT----RRPELGDKFSSRHGQKGVCGLIVQQEDMPFT 956
Query: 123 -------------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSF 162
T +++E GK G G + Y T F GG E +
Sbjct: 957 DQGINPDIIMNPHGFPSRMTVGKMIELLSGKAGVITGTLQYGTAF----GGSKVEDMSAL 1012
Query: 163 VSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSE 222
+ + +G + K + P++ + + +YQ+ HM +
Sbjct: 1013 LVE---------NGYNYAGKETLTSGITGQPLECYVYFGPI---------YYQRLKHMVQ 1054
Query: 223 DKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI 282
DK+ R G LT +P R R GG+ GEM+ DCLI +GA+ L ERL + A +
Sbjct: 1055 DKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFTV 1114
Query: 283 QR-----VVG-GPYCRICNSADDIIKANVPYGAKLLSQEL 316
++G +C C+S+ +++ +PYG KL+ QEL
Sbjct: 1115 HACQKCGLMGYNGFCPYCSSSKHVVQLTIPYGTKLMLQEL 1154
>gi|383862931|ref|XP_003706936.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Megachile
rotundata]
Length = 1132
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 149/343 (43%), Gaps = 73/343 (21%)
Query: 20 VDNKDIQV-KSRPSDDM--LNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVL 76
V+N+ + V KS PS ++ +N G +Q+++ +Y ++ + K V KV+
Sbjct: 820 VENRKVMVNKSSPSVNIGPVNSGNVQTQT------EYKDV----PVVFKGPVPAYVEKVM 869
Query: 77 LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ------------- 122
+SSN + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 870 ISSNAEDAFLIKLLLRQT----RRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDYGICPD 925
Query: 123 ------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNC 169
T +L+E GK G G Y T F S + E+
Sbjct: 926 MIMNPHGFPSRMTVGKLIELLAGKAGVIKGEFHYGTAFGGSKVEDVCEE----------- 974
Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
G ++ K +F + P+ ++ I++ +YQ+ HM +DK+ R+
Sbjct: 975 --LVKHGYNYLGKDFFYSGITGEPL---------QAYIYSGPVYYQKLKHMVQDKMHARS 1023
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQ 283
G LT +P R + GG+ GEM+ DCLI +GAS L ERL ++ N
Sbjct: 1024 RGPRAVLTRQPTEGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDICNKCG 1083
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ + ++PY KLL QEL SM I +
Sbjct: 1084 LMAYSGWCHSCRSSSCVSTISMPYACKLLFQELQ-SMNIVPRL 1125
>gi|341038522|gb|EGS23514.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1157
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 130/281 (46%), Gaps = 36/281 (12%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTPAQ---- 126
KV++S+ + KN A++ ++ LGDKFSS HGQKGV+G + E P
Sbjct: 887 KVMVSNTE--KNTAIIKVQ--TRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFSDSGI 942
Query: 127 LLEAALGKGACDGLMSYATPFATSTG--GVITEQHQ-----SFVSQLLNCIGAR--NSGI 177
+ + + M+ F TG V+ + +F S + +G G
Sbjct: 943 VPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAGRPDYGFGDAFRSHPVEEMGRVLIEHGF 1002
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ K YF + P + + +F +YQ+ HM +DK+ R+ G LT
Sbjct: 1003 SWEGKDYFTSGITGNPHE---------AYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILT 1053
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVG------GPYC 291
+P R R GG+ GEM+ DCLIA+GAS L ERL + A + +C
Sbjct: 1054 RQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDATQVDVCEACGLFGYKGFC 1113
Query: 292 RICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFDTQLS 331
+ C S ++ + +PY AKLL QEL S ++G+ ++ + +
Sbjct: 1114 QTCQSTANVTQMTMPYAAKLLVQELISMNVGVRMQLEDKFP 1154
>gi|294495209|ref|YP_003541702.1| DNA-directed RNA polymerase, subunit B' [Methanohalophilus mahii
DSM 5219]
gi|292666208|gb|ADE36057.1| DNA-directed RNA polymerase, subunit B' [Methanohalophilus mahii
DSM 5219]
Length = 604
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 127/293 (43%), Gaps = 38/293 (12%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
+I ++ E+G+V VLL+ + +G V +R +GDKF+S HGQKGV+G +
Sbjct: 321 AITMRSNEKGVVDTVLLTESINGTRLTKVKVRDQ----RIPEIGDKFASRHGQKGVIGLI 376
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P Q + D +++ +A P + G V+ + ++ + G R F
Sbjct: 377 --VPYQDMPFTESGMVPDLVLNPHAIPSRMTVGHVL----EMIGGKVGSIEGRRIKATAF 430
Query: 180 -----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
+ H F E D + V++ IF + YQ+ HM K+ R
Sbjct: 431 SGENEDDLRAGLQNHGFSHTGKEVFYDGVTG-KKVQADIFVGVILYQKLHHMVASKMHAR 489
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ FGEM+ D +I HGA+ L ERL C
Sbjct: 490 SRGPVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMTLKERLLDESDKVEELVCGNC 549
Query: 276 KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL-SFSMGITLKFD 327
+A R YC C S DI + + Y KLL E+ S + L+ D
Sbjct: 550 GMIA-TFDRRRNVRYCSNCGSETDIHRVEMSYAFKLLLDEIKSLGVAPRLRLD 601
>gi|88601370|ref|YP_501548.1| DNA-directed RNA polymerase subunit B' [Methanospirillum hungatei
JF-1]
gi|88186832|gb|ABD39829.1| DNA-directed RNA polymerase, subunit B' [Methanospirillum hungatei
JF-1]
Length = 606
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 160/389 (41%), Gaps = 73/389 (18%)
Query: 2 NQASLECGVFRSESYKA----------------EVDNKDI------QVKSRPSDDMLNFG 39
N+AS++ GV RS ++ EV ++D+ + DD +
Sbjct: 227 NKASIDRGVGRSHFFRTYEGEERRYPGGQIDRIEVPDEDVTGAHGSDYYANLDDDGIINP 286
Query: 40 KIQSKSGDIVIGKYA---------------EIGADHSIKLKHTERGLVLKVLLSSNDDGK 84
+ K D++IGK + E D S+ ++ E G+V V+L+ ++
Sbjct: 287 ETIVKEKDVIIGKTSPPRFLEEPTSELITVEKRRDTSVTMRSNEHGIVDTVILTEGENNS 346
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYA 144
V R + +GDKF+S HGQKGV+G + TP+ + G D +++
Sbjct: 347 KLVKVRTRD----LRIPEVGDKFASRHGQKGVVGLI--TPSVDMPFTAGGLTPDLVIN-- 398
Query: 145 TPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-----------IFKHYFLFCLFECP 193
P A + I + ++ + G R +G F + K F E
Sbjct: 399 -PHAIPSRMTIGHMLEMLGGKVGSLEGRRIAGTAFSGEREEDLRASLKKFGFSHTGREAM 457
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D I + I+ + +YQ+ HM K+ R+ G Q LT +P R R GG+ FG
Sbjct: 458 WDGITGRRFLAD-IYVGVIYYQKLYHMVSSKMHARSRGPVQVLTRQPTEGRAREGGLRFG 516
Query: 254 EMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSADDI 300
EM+ D +I HGA+ L ERL +C VA ++ R C C S DI
Sbjct: 517 EMERDVMIGHGAAMALKERLLEESDKVTEYVCARCGMVA-MLDRKQNITRCLNCGSETDI 575
Query: 301 IKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ Y KLL E+ SM I + + +
Sbjct: 576 YPVEMSYAFKLLLDEMK-SMTIAPRLNLE 603
>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 1175
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 166/405 (40%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVK------SRPS----------------DDMLNF 38
+N +++E G FRS Y++ D++ ++ +P+ DD +
Sbjct: 797 LNASAVERGYFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMRNAMYDKLDDDGIIA 856
Query: 39 GKIQSKSGDIVIGKYAEI--------GA-------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + GA D S L+++E G V +V+++ N +G
Sbjct: 857 PGVRVSGDDVIIGKTITLPDNDDELEGATKRYTKRDASTFLRNSETGCVDQVMITLNSEG 916
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 917 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 972
Query: 125 -------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK + + G + ATPF + + +S LL G + G
Sbjct: 973 IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAV-------NVQKISTLLQEYGYQLRG 1025
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1026 NELMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1071
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1072 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1131
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1132 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1172
>gi|401408519|ref|XP_003883708.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
gi|325118125|emb|CBZ53676.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
Length = 1366
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 122/270 (45%), Gaps = 32/270 (11%)
Query: 72 VLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAA 131
V +V+ + N DG V +RQ+ LGDKFSS HGQKGV+G + PA+ L A
Sbjct: 1101 VERVICTDNSDGCRTYKVIMRQT----RLPELGDKFSSRHGQKGVVGLI--APAEDLPFA 1154
Query: 132 LGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-----------I 180
G C L+ P + + + + + IGA G F +
Sbjct: 1155 -ESGWCPDLI--MNPHGFPSRMTVGKMMELIAGKSALQIGACQYGTAFGGVSVDTLAEIL 1211
Query: 181 FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRP 240
H F + E I L ++ +F +YQ+ HM +DK+ R G Q LT +P
Sbjct: 1212 ASHGFHYSGKEYLTSGITGEAL-QTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQP 1270
Query: 241 VADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGP--------YCR 292
R + GG+ GEM+ DCL+A+G+S L ERL ++V + V +C
Sbjct: 1271 TEGRAKEGGLRLGEMERDCLVAYGSSALLMERLMLS--SDVFEACVCATCGLMGYEGWCP 1328
Query: 293 ICNSADDIIKANVPYGAKLLSQELSFSMGI 322
C + ++ +PY KLL QEL SM +
Sbjct: 1329 YCKTGKNVAPIRMPYACKLLFQEL-MSMNV 1357
>gi|429902425|dbj|BAM72631.1| RNA polymerase subunit B [halophilic archaeon]
Length = 608
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 129/297 (43%), Gaps = 44/297 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 F-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
F + H F E + + + IF FYQ+ HM +K+
Sbjct: 434 FTGEDEDELRGSLEAHGFDSSGKETMYSGVTG-EKIEADIFVGDIFYQKLYHMVSNKLHA 492
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------K 274
R+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +
Sbjct: 493 RSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGE 552
Query: 275 C--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
C V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 553 CGMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|448476274|ref|ZP_21603438.1| DNA-directed RNA polymerase subunit B' [Halorubrum aidingense JCM
13560]
gi|242392256|dbj|BAH80365.1| RNA polymerase subunit B' [Halorubrum aidingense JCM 13560]
gi|445815823|gb|EMA65742.1| DNA-directed RNA polymerase subunit B' [Halorubrum aidingense JCM
13560]
Length = 609
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 128/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGENGVVDTVTLMEGEDGSKLSKVKVRDQ----RVPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +M+ +A P + G V+ + ++ + G+R G F
Sbjct: 382 --APQEDMPFTEEGVVPDLVMNPHALPSRMTVGHVL----EMLGGKVGSLRGSRVDGTPF 435
Query: 180 -----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
+ H F E + V + IF FY + HM +K+ R
Sbjct: 436 QGEDEEDLRGGLEDHGFKSSGKEVMYSGVTG-EKVDAEIFVGTIFYHKLYHMVSNKLHAR 494
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------ 282
+ G Q LT +P R R GG+ GEM+ D +I HGAS L+ERL + A +
Sbjct: 495 SRGPVQVLTRQPTEGRAREGGLRVGEMERDTIIGHGASMVLNERLLESSDAETVHVSAET 554
Query: 283 ---------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
QR V Y + DDI + V Y KLL E+ ++GI K + +
Sbjct: 555 GLVAVEDREQRRV---YDPVTGDEDDIHELEVSYAFKLLLDEM-IALGIRPKLELE 606
>gi|86451147|gb|ABC96796.1| RNA polymerase II [Gentiana lutea]
Length = 206
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 103/232 (44%), Gaps = 53/232 (22%)
Query: 67 TERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQT 123
+E G+V +VLL++N DG F V +R V +GDKFSS HGQKG +G E
Sbjct: 1 SETGMVDQVLLTTNADGLRFVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDM 56
Query: 124 P-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQH 159
P QL+E +GK A G ATPF T
Sbjct: 57 PFTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT-------- 108
Query: 160 QSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIH 219
+S+ L+ G + G ++ + L + IF T+YQ+ H
Sbjct: 109 VDNISKALHKCGYQMRGFERMYNGHTGRSL--------------SATIFLGPTYYQRLKH 154
Query: 220 MSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
M +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L E
Sbjct: 155 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 206
>gi|257051868|ref|YP_003129701.1| DNA-directed RNA polymerase subunit B' [Halorhabdus utahensis DSM
12940]
gi|242392254|dbj|BAH80364.1| RNA polymerase subunit B' [Halorhabdus utahensis]
gi|256690631|gb|ACV10968.1| RNA polymerase Rpb2 domain 6 [Halorhabdus utahensis DSM 12940]
Length = 608
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKG++G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDE----RIPELGDKFASRHGQKGIVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEQGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 FI------FKHYFLFCLFECPMDWIAFICL----VRSLIFTWITFYQQFIHMSEDKVKFR 228
F + F+ + + + V + IF FYQ+ HM +K+ R
Sbjct: 434 FTGEDEEDLRDSLEDHGFDSSGKEVMYSGITGEKVEAEIFVGNIFYQKLYHMVSNKIHAR 493
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KC 275
+ G Q LT +P R R GG+ GEM+ D I HGA+ L ERL +C
Sbjct: 494 SRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAALTLKERLLDESDQEWIHVCGQC 553
Query: 276 --KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
V NV QR V YC C+ D+ + + Y KLL E+ ++GI + + +
Sbjct: 554 GMTAVENVDQRRV---YCPNCDEETDVHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|3746596|gb|AAC64013.1| RNA polymerase II subunit 2 [Chironia linoides]
Length = 256
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 123/285 (43%), Gaps = 71/285 (24%)
Query: 64 LKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL--- 120
L H+E G+V +VLL++N DG + ++ V V +GDKFSS HGQKG +G
Sbjct: 1 LHHSETGMVDQVLLTTNADG----LRFVKVRVRSVRVPQIGDKFSSRHGQKGTVGMTYTQ 56
Query: 121 EQTP-----------------------AQLLEAALGKGACD-GLMSYATPFATSTGGVIT 156
E P QL+E +GK A G ATPF T
Sbjct: 57 EDMPFTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT----- 111
Query: 157 EQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQ 216
+S+ L G + G +F + F + IF T+YQ+
Sbjct: 112 ---VDNISRALPKCGYQMRGFERMFNGH----------TGRPFT----ATIFLGPTYYQR 154
Query: 217 FIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL--- 273
HM +DK+ R G Q LT +P R R GG+ FGEM+ DC+IAHGA+ L ERL
Sbjct: 155 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQ 214
Query: 274 ----------KCK--NVANVIQRVVGGPYCRICNSADDIIKANVP 306
+C +AN+ + CR C + DI++ +P
Sbjct: 215 SDAYRIHVCERCGLIAIANLKKNSF---ECRSCKNKTDIVQVYIP 256
>gi|448444630|ref|ZP_21589920.1| DNA-directed RNA polymerase subunit B' [Halorubrum saccharovorum
DSM 1137]
gi|242392272|dbj|BAH80373.1| RNA polymerase subunit B' [Halorubrum saccharovorum]
gi|445686043|gb|ELZ38384.1| DNA-directed RNA polymerase subunit B' [Halorubrum saccharovorum
DSM 1137]
Length = 609
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 128/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDQ----RVPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +M+ +A P + G V+ + ++ + G+R G F
Sbjct: 382 --APQEDMPFTEEGVVPDLVMNPHALPSRMTVGHVL----EMLGGKVGSLRGSRVDGTPF 435
Query: 180 -----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
+ H F E + + + IF FY + HM +K+ R
Sbjct: 436 QGEDEEELRGGLEDHGFKSSGKEVMYSGVTG-EKIEAEIFVGTIFYHKLYHMVSNKLHAR 494
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------ 282
+ G Q LT +P R R GG+ GEM+ D +I HGAS L+ERL + A +
Sbjct: 495 SRGPVQVLTRQPTEGRAREGGLRVGEMERDTIIGHGASMVLNERLLESSDAETVHVSAET 554
Query: 283 ---------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
QR V Y + DDI + V Y KLL E+ ++GI K + +
Sbjct: 555 GLVAVEDREQRRV---YDPVTGDEDDIHELEVSYAFKLLLDEM-IALGIRPKLELE 606
>gi|123469849|ref|XP_001318134.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
vaginalis G3]
gi|121900885|gb|EAY05911.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
vaginalis G3]
Length = 1104
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 136/313 (43%), Gaps = 66/313 (21%)
Query: 62 IKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL- 120
+ K E G V KV+ +++DDGK V+S+ MV + +GDKFSS HGQKGV F
Sbjct: 799 MSYKDGEDGFVDKVITTTSDDGKR--VLSVVLKFRMVRTPTIGDKFSSRHGQKGVFSFPW 856
Query: 121 --EQTP-----------------------AQLLEAALGK--GACDGLMSYATPFATSTGG 153
E P L+E+ GK + D ATPF
Sbjct: 857 PQENMPFCENGITPDVIINPHAFPSRMTIGMLIESMCGKLRASQDCAFFDATPFTHDEKN 916
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
IT++ V Q+L G F++Y ++ + F ++ IF + +
Sbjct: 917 RITDE----VGQMLAKEG---------FEYYGNEAMYSG-ITGEQF----KADIFMGVVY 958
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHER- 272
YQ+ HM DK + R TG +T +P+ RK+ GGI GEM+ D L+A G + L +R
Sbjct: 959 YQRLRHMVGDKYQVRATGKMNNITRQPLKGRKKGGGIRLGEMERDGLLAQGVTFLLRDRF 1018
Query: 273 LKCKN--VANVIQRV--------------VGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
+ C + VA + R V YC C + + VPY + L E
Sbjct: 1019 MWCSDGHVAKLCNRCGSFMFTQTKHDENGVEETYCTYCKKSGNCTSVYVPYVLRYLCAEF 1078
Query: 317 SFSMGITLKFDTQ 329
+ +M I +KF T+
Sbjct: 1079 A-AMNIRMKFSTE 1090
>gi|49522875|gb|AAH73857.1| POLR1B protein, partial [Homo sapiens]
Length = 560
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 157/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 184 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 243
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 244 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 300
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 301 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 360
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 361 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 413
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 414 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 462
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 463 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 522
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 523 CTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 558
>gi|429217659|ref|YP_007175649.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
15908]
gi|429134188|gb|AFZ71200.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
15908]
Length = 1172
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 131/312 (41%), Gaps = 64/312 (20%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFS 108
VIG D S++L++ E G+V V ++ + V +R + LGDKF+
Sbjct: 842 VIGPGVLSKRDTSVQLRYGESGVVDTVFITQTSERNKLVKVKVRD----LRIPELGDKFA 897
Query: 109 SMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMSYATPFATS--TGGVITEQH----QSF 162
S HGQKGV+G L Y P+ T +I H +
Sbjct: 898 SRHGQKGVVGML-------------------FPRYDMPYTEDGITPDIIVNPHGIPSRMT 938
Query: 163 VSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFIC--------------------L 202
V QLL + A+ + + K+ ++ ++ + + L
Sbjct: 939 VGQLLELVTAKAGAL--LGKYIDGTPFYKEDINNLQLVLVKKGFDPNGKEVMYDGRTGRL 996
Query: 203 VRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIA 262
+ + I I FYQ+ HM DK+ R TG Q LT +P + R GG+ FGEM+ DCL+
Sbjct: 997 IENTITIGIAFYQRLYHMVSDKMHARATGKVQLLTRQPTEGKARQGGLRFGEMERDCLVG 1056
Query: 263 HGASGNLHER------LKCKNVANVIQRVV-----GGPY-CRICNSADDIIKANVPYGAK 310
+GA+ L +R L +V N+ + G Y C I + DI VPY K
Sbjct: 1057 YGATMMLRDRMLENSDLYVMHVCNLCGHIAWYNSKRGIYECPIHGDSGDIRPIKVPYAFK 1116
Query: 311 LLSQELSFSMGI 322
L QE+ SMG+
Sbjct: 1117 LFLQEI-ISMGV 1127
>gi|393911066|gb|EJD76149.1| DNA-directed RNA polymerase [Loa loa]
Length = 1136
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 122/288 (42%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
+VLL+ N+D + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 871 RVLLTYNEDDAHLIKVLLRQT----RRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGM 926
Query: 123 ---------------TPAQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQL 166
T +L+E GK A G Y T F V+ E+ ++
Sbjct: 927 CPDMIMNPHGYPSRMTVGKLMELLSGKNAVLSGKFHYGTAFGGDQVDVVCEE---LAARG 983
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N +G SGIT +C + I+ +YQ+ HM DK
Sbjct: 984 FNYLGKDMLTSGITG------------------QQLC---AYIYFGPIYYQKLKHMVLDK 1022
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NV 278
+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL +V
Sbjct: 1023 MHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDV 1082
Query: 279 ANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ + +C++C S+ + +PY KLL QEL SM I K
Sbjct: 1083 CSQCGLIGYKGWCQMCRSSRTMATIKIPYACKLLFQELQ-SMNIVPKI 1129
>gi|331225399|ref|XP_003325370.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304360|gb|EFP80951.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1272
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 128/302 (42%), Gaps = 60/302 (19%)
Query: 58 ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVL 117
A+ + + T + KV+++ + + V +RQ+ LGDKFSS HGQKGV
Sbjct: 991 ANTPMTYRGTVPSYIDKVMVTDTESDQTLVKVLLRQT----RRPELGDKFSSRHGQKGVC 1046
Query: 118 GFLEQ--------------------------TPAQLLEAALGK-GACDGLMSYATPFATS 150
G + Q T ++LE GK G G + Y T F
Sbjct: 1047 GLIVQQEDMPFNDRGTCPDIIMNPHGFPSRMTVGKMLELLSGKAGVLRGTVEYGTAFG-- 1104
Query: 151 TGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTW 210
G E + + G +++ K Y + P++ F+ +
Sbjct: 1105 -GSKAVEMSKILIEH----------GYSYLGKDYLTSGITGQPLEHYVFMGPI------- 1146
Query: 211 ITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLH 270
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLIAHGAS L
Sbjct: 1147 --YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAHGASQLLL 1204
Query: 271 ERLKCKNVA---NVIQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
ERL + + +V Q +G +C C + + + K +PY KLL QEL +M I
Sbjct: 1205 ERLMLSSDSFELDVCQDCGFMGYNGWCVRCKNGNSVTKITIPYACKLLFQEL-MAMNIAP 1263
Query: 325 KF 326
+
Sbjct: 1264 RL 1265
>gi|242392322|dbj|BAH80334.1| RNA polymerase subunit B' [Haloarcula hispanica ATCC 33960]
Length = 608
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 129/297 (43%), Gaps = 44/297 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 F-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
F + H F E + + + IF FYQ+ HM +K+
Sbjct: 434 FTGEDEEELRGSLEDHGFDSSGKETMYSGVTG-EKIDAEIFVGDIFYQKLYHMVSNKLHA 492
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------K 274
R+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +
Sbjct: 493 RSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQ 552
Query: 275 C--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
C V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 553 CGMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|448683946|ref|ZP_21692566.1| DNA-directed RNA polymerase subunit B' [Haloarcula japonica DSM
6131]
gi|189332910|dbj|BAG41982.1| RNA polymerase subunit B' [Haloarcula japonica]
gi|242392324|dbj|BAH80335.1| RNA polymerase subunit B' [Haloarcula japonica]
gi|445783519|gb|EMA34348.1| DNA-directed RNA polymerase subunit B' [Haloarcula japonica DSM
6131]
Length = 608
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 129/297 (43%), Gaps = 44/297 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + VS+R LGDKF+S HGQKGV+G +
Sbjct: 325 SVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDE----RIPELGDKFASRHGQKGVVGHI 380
Query: 121 EQTPAQLLEAALGKGACDGLM--SYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
P + + +G L+ +A P + G ++ + ++ G R G
Sbjct: 381 --APQEDM-PFTEEGVVPDLIINPHALPSRMTVGHIL----EMIGGKVGALEGRRVDGTA 433
Query: 179 F-----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKF 227
F + H F E + + + IF FYQ+ HM +K+
Sbjct: 434 FTGEDEEELRGSLEDHGFDSSGKETMYSGVTG-EKIDAEIFVGDIFYQKLYHMVSNKLHA 492
Query: 228 RNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------K 274
R+ G Q LT +P R R GG+ GEM+ D LI HGA+ L ERL +
Sbjct: 493 RSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQ 552
Query: 275 C--KNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
C V NV QR + YC C DI + + Y KLL E+ ++GI + + +
Sbjct: 553 CGMTAVENVEQRRI---YCPNCEEETDIHEVEMSYAFKLLLDEMK-ALGIAPRIELE 605
>gi|296223273|ref|XP_002807565.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA2 [Callithrix jacchus]
Length = 1165
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 157/397 (39%), Gaps = 92/397 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 789 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 848
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 849 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 905
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 906 NPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 965
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 966 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 1018
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 1019 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1067
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1068 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1127
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1128 CTLCHRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLD 1163
>gi|212286172|ref|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Homo sapiens]
gi|119593996|gb|EAW73590.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_a [Homo
sapiens]
Length = 1079
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 762
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 763 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 819
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 820 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 879
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 880 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 932
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 933 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 981
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP------------Y 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 982 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1041
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1042 CTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1078
>gi|242392280|dbj|BAH80377.1| RNA polymerase subunit B' [Halorubrum tibetense]
Length = 609
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG + V +R LGDKF+S HGQKGV+G L
Sbjct: 326 SVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDQ----RVPELGDKFASRHGQKGVVGHL 381
Query: 121 EQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
P + + D +M+ +A P + G V+ + ++ + G+R G F
Sbjct: 382 --APQEDMPFTEEGVVPDLVMNPHALPSRMTVGHVL----EMLGGKVGSLRGSRVDGTPF 435
Query: 180 -----------IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFR 228
+ +H F E + + + IF FY + HM +K+ R
Sbjct: 436 QGEDEEELRSGLEEHGFKSSGKEVMYSGVTG-EKIDAEIFVGTIFYHKLYHMVSNKLHAR 494
Query: 229 NTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------ 282
+ G Q LT +P R R GG+ GEM+ D +I HGAS L+ERL + A +
Sbjct: 495 SRGPVQVLTRQPTEGRAREGGLRVGEMERDTIIGHGASMVLNERLLESSDAETVHVSAET 554
Query: 283 ---------QRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
QR V Y + DDI + V Y KLL E+ ++GI K + +
Sbjct: 555 GLVAVEDREQRRV---YDPVTGDEDDIHELEVSYAFKLLLDEM-IALGIRPKLELE 606
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,070,355,741
Number of Sequences: 23463169
Number of extensions: 203833267
Number of successful extensions: 401378
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7023
Number of HSP's successfully gapped in prelim test: 2139
Number of HSP's that attempted gapping in prelim test: 379536
Number of HSP's gapped (non-prelim): 17035
length of query: 338
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 195
effective length of database: 9,003,962,200
effective search space: 1755772629000
effective search space used: 1755772629000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)